HHsearch alignment for GI: 254781218 and conserved domain: pfam07022

>pfam07022 Phage_CI_repr Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.

Probab=98.42  E-value=1e-06  Score=61.25  Aligned_cols=62  Identities=24%  Similarity=0.366  Sum_probs=51.3

Q ss_pred             HHHHHHHHCCCC-HHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf             999999972983-899999977999999997414889998999999998289999952472102
Q gi|254781218|r  117 RLKSIRKDKGMS-QIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI  179 (205)
Q Consensus       117 rLk~lR~~~gls-q~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~~  179 (205)
T Consensus         2 vi~Rl~~a~G~~t~~eLA~~LgI~~stis~w~~R~~~-P~e~iv~~~~~tGvsl~WL~~G~G~~   64 (65)
T pfam07022         2 VIERLMKAYGFKSRSELADHLGVSKSTLSTWYKRDSF-PAEWVIRCALETGVSLDWLATGDGEL   64 (65)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC-CHHHHHHHHHHHCCCHHHHHCCCCCC
T ss_conf             8999999968886999999969888889999986999-89999999999882999997089999