HHsearch alignment for GI: 254781218 and conserved domain: pfam07022
>pfam07022 Phage_CI_repr Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.
Probab=97.96 E-value=3.4e-05 Score=51.92 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=49.7
Q ss_pred HHHHHHHCCC-CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 9999998599-88999998489999999887799888999999999982899999614532
Q gi|254781218|r 36 IKDIRKANNK-TQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 36 ik~lR~~~gl-tQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
T Consensus 3 i~Rl~~a~G~~t~~eLA~~LgI~~stis~w~~R~~~-P~e~iv~~~~~tGvsl~WL~~G~G 62 (65)
T pfam07022 3 IERLMKAYGFKSRSELADHLGVSKSTLSTWYKRDSF-PAEWVIRCALETGVSLDWLATGDG 62 (65)
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC-CHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 999999968886999999969888889999986999-899999999998829999970899