HHsearch alignment for GI: 254781218 and conserved domain: smart00352
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=93.08 E-value=0.15 Score=29.34 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHC------CCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 77799999999972983899999977------9999999974148899989999999982
Q gi|254781218|r 112 YAIGARLKSIRKDKGMSQIEFGKLLG------MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 (205)
Q Consensus 112 ~~iG~rLk~lR~~~glsq~elA~~lg------is~~tis~~E~g~~~Ps~~~l~kIa~~l 165 (205)
T Consensus 10 e~Fa~~fk~rRi~LG~TQ~dVG~aL~~l~g~~~SQttIcRFE~l~--LS~kn~~kLkPiL 67 (75)
T smart00352 10 EAFAKTFKQRRIKLGFTQADVGLALGALYGPDFSQTTICRFEALQ--LSFKNMCKLKPLL 67 (75)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCC--CCHHHHHHHHHHH
T ss_conf 999999999898737759999999998618643146888988605--4798899889999