HHsearch alignment for GI: 254781218 and conserved domain: smart00530
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=99.36 E-value=2e-12 Score=96.52 Aligned_cols=56 Identities=27% Similarity=0.332 Sum_probs=44.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 99999998599889999984899999998877998889999999999828999996
Q gi|254781218|r 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 (205)
Q Consensus 35 rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~L 90 (205)
T Consensus 1 rlr~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~~~~~~l 56 (56)
T smart00530 1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDEL 56 (56)
T ss_pred CHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHC
T ss_conf 98999977299999999998959999999997998999999999999988889879