Query gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs 204 out of 5029
Neff 6.4
Searched_HMMs 23785
Date Wed Jun 1 05:07:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781218.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3op9_A PLI0006 protein; struct 99.7 1.5E-16 6.3E-21 120.7 10.6 73 28-100 6-78 (114)
2 3ivp_A Putative transposon-rel 99.7 2.4E-16 1E-20 119.4 11.3 68 29-96 10-77 (126)
3 2ewt_A BLDD, putative DNA-bind 99.6 3.4E-16 1.4E-20 118.5 8.3 66 27-92 4-71 (71)
4 1y9q_A Transcriptional regulat 99.6 6.8E-16 2.9E-20 116.7 8.9 72 24-95 4-75 (192)
5 1b0n_A Protein (SINR protein); 99.6 4E-15 1.7E-19 111.9 12.1 65 32-96 2-67 (111)
6 3ivp_A Putative transposon-rel 99.6 1.6E-15 6.5E-20 114.4 8.6 76 106-181 5-80 (126)
7 2r1j_L Repressor protein C2; p 99.6 1.6E-15 6.6E-20 114.4 8.3 63 32-94 6-68 (68)
8 2bnm_A Epoxidase; oxidoreducta 99.6 1.5E-15 6.1E-20 114.6 8.0 72 25-96 4-76 (198)
9 3mlf_A Transcriptional regulat 99.6 4.1E-17 1.7E-21 124.2 -0.3 80 17-96 9-88 (111)
10 1adr_A P22 C2 repressor; trans 99.6 2.5E-15 1.1E-19 113.2 8.8 64 32-95 6-69 (76)
11 3op9_A PLI0006 protein; struct 99.6 2.7E-15 1.1E-19 113.0 8.8 68 111-178 7-74 (114)
12 2r1j_L Repressor protein C2; p 99.6 1.9E-15 7.8E-20 114.0 7.5 66 111-176 3-68 (68)
13 3f52_A CLP gene regulator (CLG 99.6 5.3E-15 2.2E-19 111.2 8.9 68 28-95 25-92 (117)
14 2kpj_A SOS-response transcript 99.6 7.8E-15 3.3E-19 110.1 9.1 73 29-101 7-79 (94)
15 3mlf_A Transcriptional regulat 99.6 9.2E-16 3.9E-20 115.9 4.3 74 106-179 16-89 (111)
16 1zug_A Phage 434 CRO protein; 99.6 4.6E-15 1.9E-19 111.5 7.8 66 31-97 3-68 (71)
17 2b5a_A C.BCLI; helix-turn-heli 99.6 8.7E-15 3.7E-19 109.8 9.2 69 26-94 5-73 (77)
18 1y9q_A Transcriptional regulat 99.6 7E-15 2.9E-19 110.4 8.3 68 110-177 8-75 (192)
19 1adr_A P22 C2 repressor; trans 99.6 5.8E-15 2.4E-19 110.9 7.7 67 112-178 4-70 (76)
20 1r69_A Repressor protein CI; g 99.6 5.8E-15 2.5E-19 110.9 7.0 63 32-95 2-64 (69)
21 1b0n_A Protein (SINR protein); 99.6 1.8E-14 7.7E-19 107.8 9.5 65 114-178 2-67 (111)
22 3b7h_A Prophage LP1 protein 11 99.6 1.2E-14 5.2E-19 108.9 8.6 69 28-96 4-73 (78)
23 3bs3_A Putative DNA-binding pr 99.6 1.6E-15 6.8E-20 114.3 4.0 71 25-95 4-74 (76)
24 1y7y_A C.AHDI; helix-turn-heli 99.5 1.2E-14 5E-19 109.0 8.0 63 30-92 12-74 (74)
25 1lmb_3 Protein (lambda repress 99.5 1.7E-14 7.1E-19 108.1 8.7 75 19-93 5-79 (92)
26 2p5t_A Putative transcriptiona 99.5 3.7E-16 1.5E-20 118.3 0.1 65 32-96 2-66 (158)
27 3omt_A Uncharacterized protein 99.5 3.3E-15 1.4E-19 112.5 4.4 62 32-93 9-70 (73)
28 1r69_A Repressor protein CI; g 99.5 9.4E-15 3.9E-19 109.6 6.7 65 113-178 1-65 (69)
29 1zug_A Phage 434 CRO protein; 99.5 1.3E-14 5.4E-19 108.8 7.2 65 113-178 3-67 (71)
30 2jvl_A TRMBF1; coactivator, he 99.5 7.6E-15 3.2E-19 110.2 5.6 70 112-181 33-104 (107)
31 3g5g_A Regulatory protein; tra 99.5 5E-14 2.1E-18 105.1 9.5 67 28-94 25-91 (99)
32 2ewt_A BLDD, putative DNA-bind 99.5 2E-14 8.5E-19 107.6 7.4 63 111-173 6-70 (71)
33 3clc_A Regulatory protein; pro 99.5 3.6E-14 1.5E-18 106.0 8.6 69 27-95 7-75 (82)
34 3kz3_A Repressor protein CI; f 99.5 3.8E-14 1.6E-18 105.8 8.7 73 21-93 2-74 (80)
35 2ict_A Antitoxin HIGA; helix-t 99.5 2.4E-14 9.9E-19 107.2 7.5 62 32-93 9-70 (94)
36 3f6w_A XRE-family like protein 99.5 5.8E-14 2.5E-18 104.7 9.2 67 27-93 10-76 (83)
37 2bnm_A Epoxidase; oxidoreducta 99.5 3.2E-14 1.3E-18 106.4 7.7 69 111-179 8-77 (198)
38 3omt_A Uncharacterized protein 99.5 5.5E-15 2.3E-19 111.1 3.7 69 109-177 4-72 (73)
39 2l49_A C protein; P2 bacteriop 99.5 9E-15 3.8E-19 109.7 4.8 65 32-96 5-71 (99)
40 2ofy_A Putative XRE-family tra 99.5 1.1E-13 4.8E-18 102.9 10.2 74 19-94 4-78 (86)
41 3f52_A CLP gene regulator (CLG 99.5 4.8E-14 2E-18 105.3 8.2 67 111-177 26-92 (117)
42 2p5t_A Putative transcriptiona 99.5 2.2E-15 9.4E-20 113.5 1.2 69 114-182 2-70 (158)
43 3kxa_A NGO0477 protein, putati 99.5 2.4E-14 9.9E-19 107.2 6.3 66 28-93 65-130 (141)
44 1utx_A CYLR2; DNA-binding prot 99.5 1.6E-14 6.7E-19 108.2 5.2 62 33-94 3-64 (66)
45 2kpj_A SOS-response transcript 99.5 8.2E-14 3.4E-18 103.8 8.4 67 112-178 8-74 (94)
46 2jvl_A TRMBF1; coactivator, he 99.5 2.2E-14 9.4E-19 107.3 5.2 69 28-96 31-101 (107)
47 3b7h_A Prophage LP1 protein 11 99.5 1.7E-13 7.3E-18 101.8 9.6 67 110-176 4-71 (78)
48 1y7y_A C.AHDI; helix-turn-heli 99.5 9.7E-14 4.1E-18 103.3 7.9 64 110-173 10-73 (74)
49 3bs3_A Putative DNA-binding pr 99.5 2.3E-14 9.7E-19 107.2 4.5 67 111-177 8-74 (76)
50 2b5a_A C.BCLI; helix-turn-heli 99.5 1.4E-13 5.8E-18 102.4 8.1 67 111-177 8-74 (77)
51 1x57_A Endothelial differentia 99.5 6.9E-14 2.9E-18 104.3 6.3 66 30-95 12-77 (91)
52 2wiu_B HTH-type transcriptiona 99.5 3E-14 1.3E-18 106.5 4.5 65 29-93 10-74 (88)
53 2l49_A C protein; P2 bacteriop 99.5 3.8E-14 1.6E-18 105.9 5.0 66 113-178 4-71 (99)
54 3cec_A Putative antidote prote 99.4 2.2E-13 9.1E-18 101.2 8.3 62 32-93 19-80 (104)
55 3f6w_A XRE-family like protein 99.4 2.3E-13 9.6E-18 101.1 8.1 70 112-181 13-82 (83)
56 2ict_A Antitoxin HIGA; helix-t 99.4 3.1E-13 1.3E-17 100.3 8.5 64 113-176 8-71 (94)
57 3cec_A Putative antidote prote 99.4 2.9E-13 1.2E-17 100.4 7.8 76 100-175 5-80 (104)
58 3kxa_A NGO0477 protein, putati 99.4 1.8E-13 7.6E-18 101.7 6.1 67 111-177 66-132 (141)
59 3g5g_A Regulatory protein; tra 99.4 6.7E-13 2.8E-17 98.2 8.8 66 111-176 26-91 (99)
60 1utx_A CYLR2; DNA-binding prot 99.4 1.5E-13 6.2E-18 102.3 5.3 63 115-177 3-65 (66)
61 3clc_A Regulatory protein; pro 99.4 7.3E-13 3.1E-17 98.0 8.6 66 111-176 9-74 (82)
62 2ef8_A C.ECOT38IS, putative tr 99.4 2.3E-13 9.7E-18 101.0 5.4 63 27-89 6-68 (84)
63 2wiu_B HTH-type transcriptiona 99.4 1.5E-13 6.2E-18 102.3 3.9 71 107-177 6-76 (88)
64 3bdn_A Lambda repressor; repre 99.4 2.1E-13 8.8E-18 101.3 4.3 75 21-95 7-81 (236)
65 3kz3_A Repressor protein CI; f 99.4 1.1E-12 4.8E-17 96.8 7.8 70 105-174 4-73 (80)
66 1lmb_3 Protein (lambda repress 99.4 1.3E-12 5.5E-17 96.4 8.0 72 103-174 7-78 (92)
67 2awi_A PRGX; repressor, pherom 99.4 1.4E-12 6.1E-17 96.1 7.5 64 30-94 2-65 (317)
68 1x57_A Endothelial differentia 99.3 1.1E-12 4.4E-17 97.0 6.3 66 112-177 12-77 (91)
69 3eus_A DNA-binding protein; st 99.3 4.3E-12 1.8E-16 93.2 8.8 58 28-85 11-68 (86)
70 2a6c_A Helix-turn-helix motif; 99.3 1.7E-12 7E-17 95.7 6.2 69 24-92 11-80 (83)
71 2qfc_A PLCR protein; TPR, HTH, 99.3 8.4E-13 3.5E-17 97.6 3.4 64 30-94 4-67 (293)
72 2ofy_A Putative XRE-family tra 99.3 1.5E-11 6.3E-16 89.9 9.3 66 110-177 13-79 (86)
73 3bdn_A Lambda repressor; repre 99.3 1.3E-12 5.5E-17 96.4 3.6 66 113-178 13-82 (236)
74 2awi_A PRGX; repressor, pherom 99.3 1.3E-11 5.3E-16 90.3 7.6 64 113-177 3-66 (317)
75 2ef8_A C.ECOT38IS, putative tr 99.3 4.6E-12 1.9E-16 93.0 5.3 62 112-173 9-70 (84)
76 2wus_R RODZ, putative uncharac 99.2 1.4E-11 5.8E-16 90.1 6.8 69 25-93 1-75 (112)
77 3fmy_A HTH-type transcriptiona 99.2 6.9E-12 2.9E-16 91.9 5.0 58 114-172 12-69 (73)
78 2fjr_A Repressor protein CI; g 99.2 3.2E-11 1.3E-15 87.8 7.0 61 34-95 9-70 (189)
79 3eus_A DNA-binding protein; st 99.2 5.3E-11 2.2E-15 86.4 8.2 58 110-167 11-68 (86)
80 3fmy_A HTH-type transcriptiona 99.2 1.3E-11 5.4E-16 90.2 4.6 59 32-91 12-70 (73)
81 2qfc_A PLCR protein; TPR, HTH, 99.2 8.5E-12 3.6E-16 91.4 3.3 66 111-177 3-68 (293)
82 2a6c_A Helix-turn-helix motif; 99.1 4E-11 1.7E-15 87.2 5.7 63 111-173 16-79 (83)
83 2fjr_A Repressor protein CI; g 99.1 7.1E-11 3E-15 85.7 6.9 64 116-180 9-73 (189)
84 3g7d_A PHPD; non heme Fe(II) d 99.1 3.2E-10 1.3E-14 81.6 9.9 145 34-178 6-296 (443)
85 2eby_A Putative HTH-type trans 99.1 8.8E-11 3.7E-15 85.1 6.8 63 32-94 11-74 (113)
86 2ppx_A AGR_C_3184P, uncharacte 99.1 1.5E-10 6.5E-15 83.6 5.9 59 114-173 31-89 (99)
87 2eby_A Putative HTH-type trans 99.0 5.6E-10 2.4E-14 80.1 7.0 66 111-176 8-74 (113)
88 3g7d_A PHPD; non heme Fe(II) d 99.0 3.7E-10 1.6E-14 81.2 6.0 64 33-96 232-296 (443)
89 2wus_R RODZ, putative uncharac 99.0 3.2E-10 1.4E-14 81.6 5.7 64 112-175 6-75 (112)
90 3o9x_A Uncharacterized HTH-typ 99.0 3.3E-10 1.4E-14 81.5 4.6 57 115-172 73-129 (133)
91 2ppx_A AGR_C_3184P, uncharacte 99.0 5.6E-10 2.3E-14 80.1 5.7 63 29-92 28-90 (99)
92 2o38_A Hypothetical protein; a 98.9 1.8E-09 7.7E-14 76.9 7.3 69 23-91 32-101 (120)
93 3o9x_A Uncharacterized HTH-typ 98.9 9.4E-10 4E-14 78.7 4.7 57 33-90 73-129 (133)
94 3fym_A Putative uncharacterize 98.9 2.3E-09 9.6E-14 76.4 5.5 64 30-93 2-71 (130)
95 2auw_A Hypothetical protein NE 98.8 5.2E-09 2.2E-13 74.1 6.0 42 116-157 93-134 (170)
96 3fym_A Putative uncharacterize 98.7 8.6E-09 3.6E-13 72.8 4.6 63 113-175 3-71 (130)
97 2o38_A Hypothetical protein; a 98.6 9.8E-08 4.1E-12 66.3 6.0 65 110-174 37-102 (120)
98 2auw_A Hypothetical protein NE 98.5 1.3E-07 5.3E-12 65.6 5.8 49 33-81 92-140 (170)
99 1dw9_A Cyanate lyase; cyanate 98.4 4E-06 1.7E-10 56.3 10.7 104 27-133 9-112 (156)
100 1dw9_A Cyanate lyase; cyanate 97.9 6E-05 2.5E-09 49.1 8.0 66 110-175 10-75 (156)
101 1zx4_A P1 PARB, plasmid partit 96.7 0.0027 1.1E-07 38.9 5.6 41 27-68 8-48 (192)
102 3bd1_A CRO protein; transcript 96.5 0.002 8.6E-08 39.6 4.2 45 128-173 13-59 (79)
103 3bd1_A CRO protein; transcript 96.3 0.0048 2E-07 37.3 5.1 48 45-93 12-61 (79)
104 1u78_A TC3 transposase, transp 96.0 0.076 3.2E-06 29.9 9.7 88 34-149 13-102 (141)
105 2d5v_A Hepatocyte nuclear fact 95.7 0.1 4.3E-06 29.1 12.1 128 30-171 7-140 (164)
106 1e3o_C Octamer-binding transcr 95.7 0.11 4.4E-06 29.0 10.9 129 29-170 9-143 (160)
107 1neq_A DNA-binding protein NER 95.6 0.05 2.1E-06 31.0 7.5 55 116-173 12-66 (74)
108 2k9q_A Uncharacterized protein 95.6 0.044 1.9E-06 31.3 7.2 62 32-93 3-64 (77)
109 1zx4_A P1 PARB, plasmid partit 95.5 0.014 5.8E-07 34.5 4.4 45 109-154 8-52 (192)
110 2h8r_A Hepatocyte nuclear fact 95.4 0.084 3.5E-06 29.6 8.2 47 29-75 29-75 (221)
111 2h8r_A Hepatocyte nuclear fact 95.4 0.052 2.2E-06 30.9 7.1 55 104-158 22-76 (221)
112 2d5v_A Hepatocyte nuclear fact 94.6 0.12 5.2E-06 28.6 7.2 63 109-171 4-72 (164)
113 3kjx_A Transcriptional regulat 94.5 0.057 2.4E-06 30.6 5.3 46 40-85 6-54 (344)
114 2k9q_A Uncharacterized protein 94.3 0.21 8.7E-06 27.2 7.9 59 115-173 4-62 (77)
115 3kjx_A Transcriptional regulat 94.3 0.061 2.6E-06 30.5 5.1 49 122-170 6-57 (344)
116 3mky_B Protein SOPB; partition 94.3 0.048 2E-06 31.1 4.5 38 29-66 26-64 (189)
117 1uxc_A FRUR (1-57), fructose r 94.1 0.074 3.1E-06 30.0 5.1 26 127-152 1-26 (65)
118 1rp3_A RNA polymerase sigma fa 93.7 0.17 7.1E-06 27.7 6.4 105 42-148 113-225 (239)
119 2ox6_A Hypothetical protein SO 93.5 0.36 1.5E-05 25.7 7.7 49 33-81 9-57 (166)
120 2hsg_A Glucose-resistance amyl 93.4 0.16 6.7E-06 27.9 5.9 43 43-85 1-46 (332)
121 1uxc_A FRUR (1-57), fructose r 93.4 0.1 4.2E-06 29.1 4.8 41 45-85 1-47 (65)
122 2w48_A Sorbitol operon regulat 93.4 0.13 5.5E-06 28.4 5.4 57 32-88 9-78 (315)
123 1neq_A DNA-binding protein NER 93.3 0.37 1.6E-05 25.6 7.6 57 34-93 12-68 (74)
124 1jhf_A LEXA repressor; LEXA SO 93.2 0.13 5.5E-06 28.4 5.2 37 28-64 7-46 (202)
125 2hsg_A Glucose-resistance amyl 93.2 0.15 6.5E-06 28.0 5.5 44 126-169 2-48 (332)
126 3h5t_A Transcriptional regulat 93.0 0.084 3.5E-06 29.6 3.9 47 38-84 3-52 (366)
127 2csf_A DNA-binding protein SAT 93.0 0.34 1.4E-05 25.9 7.0 48 108-155 16-64 (101)
128 3h5t_A Transcriptional regulat 92.6 0.13 5.3E-06 28.5 4.4 46 122-167 5-53 (366)
129 1qpz_A PURA, protein (purine n 92.6 0.2 8.4E-06 27.3 5.4 43 46-88 2-47 (340)
130 1l0o_C Sigma factor; bergerat 92.5 0.12 5.2E-06 28.5 4.3 104 43-148 129-236 (243)
131 1x2l_A CUT-like 2, homeobox pr 92.5 0.19 7.8E-06 27.5 5.1 48 105-152 13-61 (101)
132 1wh8_A CUT-like 2, homeobox pr 92.3 0.19 8.1E-06 27.4 5.0 46 107-152 25-71 (111)
133 2xsd_C POU domain, class 3, tr 92.1 0.57 2.4E-05 24.5 10.8 122 29-171 15-142 (164)
134 1qpz_A PURA, protein (purine n 92.1 0.25 1E-05 26.7 5.4 43 128-170 2-47 (340)
135 1r71_A Transcriptional repress 92.0 0.26 1.1E-05 26.6 5.3 35 31-66 40-74 (178)
136 1rzs_A Antirepressor, regulato 91.9 0.34 1.4E-05 25.9 5.8 40 123-166 8-47 (61)
137 1wh6_A CUT-like 2, homeobox pr 91.9 0.21 8.7E-06 27.2 4.7 45 105-149 13-58 (101)
138 1jhf_A LEXA repressor; LEXA SO 91.9 0.23 9.8E-06 26.9 5.0 36 112-147 9-47 (202)
139 1jhg_A Trp operon repressor; c 91.8 0.25 1E-05 26.7 5.1 50 29-78 41-92 (101)
140 1ic8_A Hepatocyte nuclear fact 91.8 0.62 2.6E-05 24.2 7.3 123 29-166 28-153 (194)
141 2csf_A DNA-binding protein SAT 91.5 0.45 1.9E-05 25.1 6.2 58 29-86 19-83 (101)
142 1r71_A Transcriptional repress 91.4 0.32 1.4E-05 26.0 5.3 53 101-154 28-80 (178)
143 3mky_B Protein SOPB; partition 91.3 0.14 5.8E-06 28.3 3.3 64 106-169 21-98 (189)
144 1wiz_A DNA-binding protein SAT 90.5 0.4 1.7E-05 25.4 5.1 44 110-153 18-62 (101)
145 1rzs_A Antirepressor, regulato 90.1 0.39 1.7E-05 25.5 4.8 37 42-82 9-45 (61)
146 1jko_C HIN recombinase, DNA-in 89.4 0.39 1.6E-05 25.5 4.3 33 117-150 13-45 (52)
147 3frw_A Putative Trp repressor 89.3 0.55 2.3E-05 24.6 5.0 34 113-146 44-78 (107)
148 1zs4_A Regulatory protein CII; 89.0 0.4 1.7E-05 25.4 4.1 24 44-67 24-47 (83)
149 2o0m_A Transcriptional regulat 89.0 0.063 2.6E-06 30.4 0.0 152 20-177 10-211 (345)
150 3kor_A Possible Trp repressor; 88.9 0.61 2.6E-05 24.3 5.0 36 113-148 61-97 (119)
151 1s4k_A Putative cytoplasmic pr 88.6 1.2 4.8E-05 22.6 7.2 40 36-75 8-49 (120)
152 1k78_A Paired box protein PAX5 88.3 1.2 5.1E-05 22.4 9.7 96 28-152 33-144 (149)
153 2k9s_A Arabinose operon regula 87.8 1.3 5.4E-05 22.3 9.7 94 32-172 5-102 (107)
154 2jn6_A Protein CGL2762, transp 87.8 0.3 1.3E-05 26.2 2.9 24 42-65 21-44 (97)
155 2o4a_A DNA-binding protein SAT 87.7 0.94 3.9E-05 23.1 5.3 42 113-154 11-53 (93)
156 3e3m_A Transcriptional regulat 87.4 0.09 3.8E-06 29.4 0.0 44 41-84 9-55 (355)
157 2jn6_A Protein CGL2762, transp 87.2 0.37 1.5E-05 25.6 3.0 27 122-148 19-45 (97)
158 1z05_A Transcriptional regulat 86.9 1.2 5.1E-05 22.5 5.5 34 31-64 40-73 (429)
159 1hlv_A CENP-B, major centromer 86.9 0.64 2.7E-05 24.1 4.1 35 34-68 15-49 (131)
160 3h5o_A Transcriptional regulat 86.8 0.1 4.3E-06 29.1 0.0 43 42-84 2-47 (339)
161 3h5o_A Transcriptional regulat 86.7 0.1 4.3E-06 29.1 0.0 45 125-169 3-50 (339)
162 3e3m_A Transcriptional regulat 86.7 0.1 4.4E-06 29.0 0.0 47 124-170 10-59 (355)
163 2k27_A Paired box protein PAX- 86.5 1.5 6.4E-05 21.8 8.6 104 29-164 27-134 (159)
164 3k2z_A LEXA repressor; winged 86.5 1.2 4.9E-05 22.6 5.3 35 29-63 7-43 (196)
165 3bil_A Probable LACI-family tr 86.1 0.12 4.9E-06 28.7 0.0 46 42-87 6-54 (348)
166 3lsg_A Two-component response 85.8 1.7 7E-05 21.6 9.7 70 43-145 18-88 (103)
167 1z6r_A MLC protein; transcript 85.5 0.86 3.6E-05 23.4 4.2 36 29-64 15-50 (406)
168 1bl0_A Protein (multiple antib 85.4 1.8 7.4E-05 21.5 7.2 91 35-172 16-109 (129)
169 3bil_A Probable LACI-family tr 85.0 0.14 5.9E-06 28.2 0.0 46 125-170 7-55 (348)
170 2o20_A Catabolite control prot 85.0 0.14 5.9E-06 28.2 0.0 46 43-88 4-52 (332)
171 2jml_A DNA binding domain/tran 84.4 0.48 2E-05 24.9 2.5 70 43-137 4-75 (81)
172 3dbi_A Sugar-binding transcrip 84.3 0.16 6.7E-06 27.9 0.0 46 44-89 3-51 (338)
173 1yse_A DNA-binding protein SAT 84.1 0.92 3.9E-05 23.2 3.8 39 113-151 25-64 (141)
174 1jye_A Lactose operon represso 83.8 0.17 7.3E-06 27.7 0.0 45 43-87 2-49 (349)
175 1r8d_A Transcription activator 83.7 1 4.3E-05 22.9 3.9 30 43-72 1-31 (109)
176 1vz0_A PARB, chromosome partit 83.7 1.9 8E-05 21.2 5.3 63 105-170 114-176 (230)
177 3oou_A LIN2118 protein; protei 83.1 2.2 9.3E-05 20.8 8.1 71 43-146 20-91 (108)
178 3gp4_A Transcriptional regulat 83.0 0.95 4E-05 23.1 3.5 29 44-72 2-31 (142)
179 3iwf_A Transcription regulator 82.8 1.6 6.5E-05 21.8 4.6 37 30-66 20-57 (107)
180 1l9z_H Sigma factor SIGA; heli 82.2 2.4 1E-04 20.7 9.2 24 126-149 395-418 (438)
181 1nr3_A MTH0916, DNA-binding pr 82.2 0.021 8.8E-07 33.3 -5.2 26 42-67 3-28 (122)
182 3oio_A Transcriptional regulat 82.2 2.4 1E-04 20.6 9.0 83 43-172 22-105 (113)
183 1l8q_A Chromosomal replication 81.6 2 8.4E-05 21.1 4.8 61 74-145 232-293 (324)
184 3dbi_A Sugar-binding transcrip 81.4 0.24 1E-05 26.8 0.0 44 128-171 5-51 (338)
185 3ctp_A Periplasmic binding pro 81.2 0.25 1E-05 26.7 0.0 40 46-85 4-46 (330)
186 2ao9_A Phage protein; structur 81.1 1.1 4.8E-05 22.6 3.4 25 42-66 46-70 (155)
187 2zhg_A Redox-sensitive transcr 80.7 1.4 5.7E-05 22.1 3.7 32 40-71 7-39 (154)
188 2p7v_B Sigma-70, RNA polymeras 80.6 1.1 4.6E-05 22.7 3.2 23 44-66 25-47 (68)
189 1jye_A Lactose operon represso 80.6 0.27 1.1E-05 26.5 0.0 45 126-170 3-50 (349)
190 2r0q_C Putative transposon TN5 80.5 2.7 0.00011 20.3 5.8 37 115-152 165-201 (209)
191 3jvd_A Transcriptional regulat 80.0 0.29 1.2E-05 26.3 0.0 44 43-86 5-51 (333)
192 2elh_A CG11849-PA, LD40883P; s 80.0 2.3 9.5E-05 20.8 4.6 27 123-149 35-61 (87)
193 1ais_B TFB TFIIB, protein (tra 80.0 2.8 0.00012 20.2 5.5 108 39-146 64-185 (200)
194 3cta_A Riboflavin kinase; stru 79.8 2.2 9.2E-05 20.9 4.5 29 36-64 13-47 (230)
195 2wte_A CSA3; antiviral protein 79.6 2.1 8.7E-05 21.0 4.3 32 116-147 156-187 (244)
196 2o20_A Catabolite control prot 78.9 0.33 1.4E-05 26.0 0.0 43 127-169 6-51 (332)
197 2a6h_F RNA polymerase sigma fa 78.9 3.1 0.00013 20.0 6.2 13 127-139 286-298 (423)
198 3mkl_A HTH-type transcriptiona 78.8 3.1 0.00013 19.9 9.4 83 43-173 22-105 (120)
199 3gpv_A Transcriptional regulat 78.6 1.5 6.3E-05 21.9 3.3 29 43-71 15-44 (148)
200 2rdp_A Putative transcriptiona 78.6 2 8.5E-05 21.1 4.0 29 36-64 48-76 (150)
201 3mzy_A RNA polymerase sigma-H 78.0 2.8 0.00012 20.2 4.5 31 118-148 116-146 (164)
202 1q06_A Transcriptional regulat 77.4 2.1 8.8E-05 21.0 3.8 28 45-72 1-29 (135)
203 2vz4_A Tipal, HTH-type transcr 77.0 1.9 7.9E-05 21.3 3.4 27 45-71 2-29 (108)
204 3ctp_A Periplasmic binding pro 76.9 0.41 1.7E-05 25.4 0.0 44 128-171 4-50 (330)
205 1d5y_A ROB transcription facto 76.7 3.5 0.00015 19.6 6.9 36 43-78 18-53 (292)
206 1ku3_A Sigma factor SIGA; heli 76.2 2.9 0.00012 20.1 4.2 23 126-148 30-52 (73)
207 1xwr_A Regulatory protein CII; 76.0 0.38 1.6E-05 25.6 -0.3 43 44-88 23-65 (97)
208 1j1v_A Chromosomal replication 76.0 3.7 0.00016 19.5 8.1 61 74-145 5-66 (94)
209 2o3f_A Putative HTH-type trans 76.0 2.9 0.00012 20.1 4.2 62 11-76 9-71 (111)
210 2cyy_A Putative HTH-type trans 75.9 2.5 0.0001 20.5 3.8 28 36-63 13-40 (151)
211 2eth_A Transcriptional regulat 75.8 3 0.00012 20.0 4.2 29 36-64 50-78 (154)
212 3bdd_A Regulatory protein MARR 75.6 3.1 0.00013 19.9 4.2 29 36-64 37-65 (142)
213 3nrv_A Putative transcriptiona 75.6 2.5 0.00011 20.5 3.8 29 36-64 46-74 (148)
214 2ovg_A Phage lambda CRO; trans 75.3 2.6 0.00011 20.4 3.8 25 39-65 10-34 (66)
215 1jgs_A Multiple antibiotic res 75.0 3.3 0.00014 19.8 4.3 29 36-64 40-68 (138)
216 3hh0_A Transcriptional regulat 74.8 2.9 0.00012 20.1 3.9 31 42-72 2-33 (146)
217 1j9i_A GPNU1 DBD;, terminase s 74.6 1.7 7.1E-05 21.6 2.7 29 126-155 2-30 (68)
218 3iwz_A CAP-like, catabolite ac 74.6 2.1 8.7E-05 21.0 3.1 22 126-147 187-208 (230)
219 3bpv_A Transcriptional regulat 74.4 3.1 0.00013 19.9 4.0 28 37-64 36-63 (138)
220 3g3z_A NMB1585, transcriptiona 74.4 3.5 0.00015 19.6 4.2 29 36-64 37-65 (145)
221 1ft9_A Carbon monoxide oxidati 74.0 2.3 9.6E-05 20.7 3.2 22 125-146 162-183 (222)
222 2d1h_A ST1889, 109AA long hypo 73.9 2.8 0.00012 20.2 3.6 22 43-64 35-56 (109)
223 2dbb_A Putative HTH-type trans 73.8 2.9 0.00012 20.1 3.7 28 36-63 15-42 (151)
224 2w25_A Probable transcriptiona 73.7 3 0.00013 20.0 3.8 28 36-63 13-40 (150)
225 3hef_A Gene 1 protein; bacteri 73.7 2.5 0.00011 20.5 3.4 27 40-66 27-54 (143)
226 2a61_A Transcriptional regulat 73.2 4 0.00017 19.3 4.3 29 36-64 39-67 (145)
227 1sfx_A Conserved hypothetical 73.1 4 0.00017 19.3 4.3 29 36-64 26-54 (109)
228 2p5v_A Transcriptional regulat 72.6 3.3 0.00014 19.7 3.8 28 36-63 16-43 (162)
229 2hoe_A N-acetylglucosamine kin 72.4 3.9 0.00017 19.3 4.1 43 19-64 11-53 (380)
230 3kcc_A Catabolite gene activat 72.4 2.5 0.00011 20.5 3.1 21 126-146 217-237 (260)
231 1gdt_A GD resolvase, protein ( 72.3 4.6 0.00019 18.9 4.9 32 118-150 151-182 (183)
232 2ia0_A Putative HTH-type trans 72.2 3.5 0.00015 19.6 3.8 28 36-63 23-50 (171)
233 2e1c_A Putative HTH-type trans 72.1 3.5 0.00015 19.6 3.8 28 36-63 33-60 (171)
234 3ech_A MEXR, multidrug resista 72.0 2.4 0.0001 20.6 3.0 29 36-64 43-71 (142)
235 2nnn_A Probable transcriptiona 72.0 4.2 0.00018 19.1 4.2 29 36-64 44-72 (140)
236 2zdb_A Transcriptional regulat 71.9 2.1 9E-05 20.9 2.7 22 126-147 139-160 (195)
237 1s7o_A Hypothetical UPF0122 pr 71.9 4.7 0.0002 18.8 4.7 27 37-63 31-57 (113)
238 3hug_A RNA polymerase sigma fa 71.8 4.7 0.0002 18.8 4.5 33 116-148 43-75 (92)
239 2pex_A Transcriptional regulat 71.8 2.7 0.00011 20.3 3.2 30 36-65 53-82 (153)
240 2gau_A Transcriptional regulat 71.7 2.5 0.00011 20.5 3.0 40 125-164 179-231 (232)
241 3mn2_A Probable ARAC family tr 71.5 4.8 0.0002 18.8 8.3 36 42-77 16-51 (108)
242 2cfx_A HTH-type transcriptiona 71.4 3.8 0.00016 19.4 3.9 28 36-63 11-38 (144)
243 3oop_A LIN2960 protein; protei 71.4 3.4 0.00014 19.7 3.6 28 37-64 44-71 (143)
244 3i4p_A Transcriptional regulat 71.1 2.4 0.0001 20.6 2.8 28 36-63 9-36 (162)
245 1j5y_A Transcriptional regulat 70.9 3.4 0.00014 19.7 3.5 29 36-64 27-56 (187)
246 1pdn_C Protein (PRD paired); p 70.7 4.7 0.0002 18.8 4.2 98 29-150 19-127 (128)
247 2fa5_A Transcriptional regulat 70.5 4.5 0.00019 18.9 4.1 29 36-64 55-83 (162)
248 1c9b_A General transcription f 70.4 5 0.00021 18.6 9.9 106 40-147 61-180 (207)
249 3la7_A Global nitrogen regulat 70.3 3 0.00013 20.0 3.1 22 126-147 193-214 (243)
250 1i1g_A Transcriptional regulat 70.3 4 0.00017 19.2 3.8 28 36-63 10-37 (141)
251 1z91_A Organic hydroperoxide r 70.3 2.5 0.00011 20.5 2.8 29 36-64 46-74 (147)
252 2dg6_A Putative transcriptiona 70.2 3.6 0.00015 19.5 3.5 29 45-73 1-30 (222)
253 2pn6_A ST1022, 150AA long hypo 70.2 2.5 0.0001 20.5 2.7 28 36-63 9-36 (150)
254 3d1n_I POU domain, class 6, tr 70.1 5.1 0.00021 18.6 13.7 124 29-170 6-135 (151)
255 1umq_A Photosynthetic apparatu 69.5 5.3 0.00022 18.5 4.7 34 116-149 44-77 (81)
256 3cjn_A Transcriptional regulat 69.2 3.3 0.00014 19.8 3.2 29 36-64 58-86 (162)
257 2qww_A Transcriptional regulat 69.0 3.4 0.00014 19.7 3.2 28 37-64 48-75 (154)
258 1z4h_A TORI, TOR inhibition pr 68.8 2 8.4E-05 21.1 2.0 29 127-155 11-39 (66)
259 3e97_A Transcriptional regulat 68.4 3.5 0.00015 19.6 3.1 21 126-146 175-195 (231)
260 2pij_A Prophage PFL 6 CRO; tra 68.3 3.2 0.00013 19.8 2.9 25 46-70 15-39 (67)
261 1eto_A FIS, factor for inversi 68.1 5.6 0.00024 18.3 4.2 31 116-146 61-91 (98)
262 3e6c_C CPRK, cyclic nucleotide 67.7 3.6 0.00015 19.5 3.1 41 125-165 176-229 (250)
263 3bj6_A Transcriptional regulat 67.4 3.8 0.00016 19.4 3.2 29 36-64 46-74 (152)
264 1ojl_A Transcriptional regulat 66.9 6 0.00025 18.2 4.4 32 116-147 271-302 (304)
265 3eco_A MEPR; mutlidrug efflux 66.7 2.8 0.00012 20.2 2.4 23 42-64 45-67 (139)
266 3nqo_A MARR-family transcripti 66.7 3.5 0.00015 19.6 2.9 23 43-65 56-78 (189)
267 2nyx_A Probable transcriptiona 66.6 4.8 0.0002 18.8 3.6 29 36-64 51-79 (168)
268 1xsv_A Hypothetical UPF0122 pr 66.5 5.1 0.00021 18.6 3.7 26 38-63 35-60 (113)
269 2oqg_A Possible transcriptiona 66.1 4.5 0.00019 18.9 3.3 22 42-63 32-53 (114)
270 2fmy_A COOA, carbon monoxide o 66.1 4.3 0.00018 19.1 3.2 22 125-146 166-187 (220)
271 1tty_A Sigma-A, RNA polymerase 66.0 3.8 0.00016 19.4 2.9 23 44-66 38-60 (87)
272 3bro_A Transcriptional regulat 65.8 6.3 0.00026 18.0 4.1 22 43-64 49-70 (141)
273 3fx3_A Cyclic nucleotide-bindi 65.6 3.5 0.00015 19.6 2.7 22 125-146 177-198 (237)
274 2hr3_A Probable transcriptiona 65.6 5.9 0.00025 18.2 3.8 21 44-64 50-70 (147)
275 1ub9_A Hypothetical protein PH 65.5 4.2 0.00018 19.1 3.1 26 38-63 24-49 (100)
276 2kfs_A Conserved hypothetical 65.1 4.1 0.00017 19.2 2.9 25 127-151 32-56 (148)
277 3dkw_A DNR protein; CRP-FNR, H 65.0 3.6 0.00015 19.6 2.6 21 126-146 178-198 (227)
278 3gbg_A TCP pilus virulence reg 64.9 6.5 0.00027 17.9 10.2 23 126-148 185-207 (276)
279 2oz6_A Virulence factor regula 64.8 4.4 0.00018 19.0 3.1 22 126-147 164-185 (207)
280 3k7a_M Transcription initiatio 64.4 2.3 9.7E-05 20.7 1.6 103 44-146 186-312 (345)
281 1ntc_A Protein (nitrogen regul 64.3 4.9 0.00021 18.7 3.2 32 116-147 54-85 (91)
282 3k0l_A Repressor protein; heli 64.2 3.9 0.00016 19.3 2.7 26 38-63 54-79 (162)
283 2cg4_A Regulatory protein ASNC 64.1 6.2 0.00026 18.1 3.7 27 36-62 14-40 (152)
284 3cuo_A Uncharacterized HTH-typ 64.1 5.3 0.00022 18.5 3.4 21 126-146 38-58 (99)
285 2l1p_A DNA-binding protein SAT 63.6 5.7 0.00024 18.3 3.5 31 43-73 31-61 (83)
286 3dn7_A Cyclic nucleotide bindi 63.5 1.2 5.1E-05 22.5 0.0 23 126-148 168-190 (194)
287 2jpc_A SSRB; DNA binding prote 63.4 4.4 0.00019 19.0 2.9 23 42-64 11-33 (61)
288 2o8x_A Probable RNA polymerase 63.3 7 0.00029 17.7 4.5 30 117-146 22-51 (70)
289 2fxa_A Protease production reg 63.1 6.1 0.00026 18.1 3.5 29 36-64 54-82 (207)
290 1s3j_A YUSO protein; structura 62.8 7.1 0.0003 17.7 4.4 29 36-64 43-71 (155)
291 1x3u_A Transcriptional regulat 62.3 5.5 0.00023 18.4 3.2 25 122-146 27-51 (79)
292 3b73_A PHIH1 repressor-like pr 62.1 5.3 0.00022 18.5 3.1 27 37-63 20-48 (111)
293 1g2h_A Transcriptional regulat 61.9 6.2 0.00026 18.0 3.4 30 118-148 26-55 (61)
294 1lj9_A Transcriptional regulat 61.7 5.6 0.00024 18.3 3.2 27 38-64 37-63 (144)
295 2zkz_A Transcriptional repress 61.7 7.5 0.00031 17.6 4.7 29 118-146 33-61 (99)
296 1fse_A GERE; helix-turn-helix 61.2 6.1 0.00026 18.1 3.3 25 122-146 22-46 (74)
297 3f3x_A Transcriptional regulat 60.9 7 0.00029 17.8 3.5 23 42-64 48-70 (144)
298 1r8e_A Multidrug-efflux transp 60.4 7.9 0.00033 17.4 8.3 47 45-91 6-70 (278)
299 1zyb_A Transcription regulator 60.2 6 0.00025 18.2 3.1 22 126-147 186-207 (232)
300 3iyd_F RNA polymerase sigma fa 59.0 0.92 3.9E-05 23.2 -1.3 53 31-83 339-394 (613)
301 2fbh_A Transcriptional regulat 58.9 6.8 0.00029 17.8 3.2 22 43-64 51-72 (146)
302 2zcw_A TTHA1359, transcription 58.6 6.8 0.00028 17.8 3.1 42 126-167 146-200 (202)
303 2krf_A Transcriptional regulat 58.5 7.8 0.00033 17.4 3.4 25 122-146 23-47 (73)
304 3cdh_A Transcriptional regulat 58.5 4.7 0.0002 18.8 2.3 26 39-64 52-77 (155)
305 3bja_A Transcriptional regulat 58.5 2.7 0.00011 20.3 1.1 29 36-64 39-67 (139)
306 3d0s_A Transcriptional regulat 58.4 6.7 0.00028 17.9 3.1 22 125-146 176-197 (227)
307 1je8_A Nitrate/nitrite respons 57.7 7.6 0.00032 17.5 3.3 26 122-147 32-57 (82)
308 3e7l_A Transcriptional regulat 57.5 8.8 0.00037 17.1 4.8 31 116-146 22-52 (63)
309 2fbi_A Probable transcriptiona 57.4 8.8 0.00037 17.1 3.6 30 36-65 42-71 (142)
310 3c57_A Two component transcrip 57.2 8.7 0.00037 17.2 3.5 25 122-146 38-62 (95)
311 1qbj_A Protein (double-strande 57.1 8.9 0.00038 17.1 4.5 22 42-63 25-46 (81)
312 3kp7_A Transcriptional regulat 56.6 6.2 0.00026 18.1 2.7 23 42-64 49-71 (151)
313 3klo_A Transcriptional regulat 56.1 8.4 0.00035 17.3 3.3 28 122-149 170-197 (225)
314 1ku9_A Hypothetical protein MJ 55.6 9.5 0.0004 16.9 6.0 24 41-64 38-61 (152)
315 3fm5_A Transcriptional regulat 55.6 7.1 0.0003 17.7 2.8 22 43-64 53-74 (150)
316 3deu_A Transcriptional regulat 54.9 8.4 0.00035 17.3 3.1 21 44-64 68-88 (166)
317 3jw4_A Transcriptional regulat 54.6 3.5 0.00015 19.6 1.1 23 42-64 55-77 (148)
318 3e6m_A MARR family transcripti 54.5 8.6 0.00036 17.2 3.1 29 36-64 59-87 (161)
319 2w7n_A TRFB transcriptional re 54.1 8.6 0.00036 17.2 3.1 25 122-146 30-54 (101)
320 2rn7_A IS629 ORFA; helix, all 53.8 4.6 0.00019 18.8 1.6 23 125-147 29-51 (108)
321 2rnj_A Response regulator prot 53.7 7.4 0.00031 17.6 2.6 25 122-146 40-64 (91)
322 1ngr_A P75 low affinity neurot 53.6 6.5 0.00027 17.9 2.4 31 45-76 22-52 (85)
323 1p4w_A RCSB; solution structur 53.5 9.2 0.00039 17.0 3.1 27 122-148 45-71 (99)
324 1tlh_B Sigma-70, RNA polymeras 53.2 3.4 0.00014 19.7 0.9 22 127-148 39-60 (81)
325 1nr3_A MTH0916, DNA-binding pr 53.1 0.23 9.8E-06 26.9 -5.1 27 123-149 2-28 (122)
326 3hsr_A HTH-type transcriptiona 52.8 3.4 0.00014 19.7 0.8 28 37-64 43-70 (140)
327 2gxg_A 146AA long hypothetical 52.3 9.1 0.00038 17.0 2.9 22 43-64 49-70 (146)
328 2zcm_A Biofilm operon icaabcd 51.6 11 0.00046 16.5 4.7 56 23-78 6-61 (192)
329 2e1f_A Werner syndrome ATP-dep 50.8 11 0.00047 16.5 3.2 56 22-93 7-62 (103)
330 2g7u_A Transcriptional regulat 50.7 11 0.00047 16.5 3.2 24 42-65 27-50 (257)
331 1on2_A Transcriptional regulat 50.4 11 0.00048 16.4 6.2 115 22-166 3-118 (142)
332 3dv8_A Transcriptional regulat 50.2 12 0.00048 16.4 5.6 22 125-146 168-189 (220)
333 3mop_A Myeloid differentiation 50.1 8.7 0.00037 17.2 2.6 31 47-78 29-59 (110)
334 1u8b_A ADA polyprotein; protei 50.1 12 0.00049 16.4 4.8 29 122-150 89-117 (133)
335 1ui5_A A-factor receptor homol 48.9 10 0.00043 16.7 2.8 33 39-71 24-56 (215)
336 2bv6_A MGRA, HTH-type transcri 47.5 5.2 0.00022 18.6 1.1 29 36-64 43-71 (142)
337 3boq_A Transcriptional regulat 47.2 4.3 0.00018 19.0 0.6 21 44-64 62-82 (160)
338 3lmm_A Uncharacterized protein 47.0 10 0.00044 16.7 2.6 114 33-150 433-554 (583)
339 1y0u_A Arsenical resistance op 46.7 13 0.00055 16.1 3.5 22 125-146 42-63 (96)
340 1mkm_A ICLR transcriptional re 46.3 13 0.00054 16.1 3.0 23 42-64 21-43 (249)
341 1u2w_A CADC repressor, cadmium 46.3 13 0.00056 16.0 4.7 29 118-146 48-76 (122)
342 2frh_A SARA, staphylococcal ac 45.7 10 0.00044 16.7 2.4 19 45-63 54-72 (127)
343 2d6y_A Putative TETR family re 44.9 14 0.00058 15.9 2.9 41 31-71 15-55 (202)
344 2o0y_A Transcriptional regulat 44.3 14 0.0006 15.8 3.1 23 42-64 36-58 (260)
345 1iuf_A Centromere ABP1 protein 43.5 6.9 0.00029 17.8 1.2 25 43-67 29-59 (144)
346 2p5k_A Arginine repressor; DNA 43.4 14 0.00061 15.8 2.8 20 44-63 19-43 (64)
347 2yve_A Transcriptional regulat 43.1 13 0.00054 16.1 2.5 68 26-93 6-73 (185)
348 1r1u_A CZRA, repressor protein 42.3 15 0.00064 15.6 4.3 24 123-146 36-59 (106)
349 3fxd_A Protein ICMQ; helix bun 42.2 13 0.00054 16.1 2.4 18 24-41 27-44 (57)
350 1u3e_M HNH homing endonuclease 42.0 15 0.00065 15.6 3.3 27 126-152 135-161 (174)
351 2ia2_A Putative transcriptiona 41.7 15 0.00064 15.6 2.7 24 42-65 34-57 (265)
352 1o5l_A Transcriptional regulat 41.6 4.5 0.00019 18.9 0.0 23 125-147 163-185 (213)
353 1d8b_A SGS1 RECQ helicase; fiv 41.5 15 0.00061 15.8 2.6 29 118-146 36-64 (81)
354 2jsc_A Transcriptional regulat 41.0 16 0.00067 15.5 2.9 29 118-147 27-55 (118)
355 1or7_A Sigma-24, RNA polymeras 40.9 16 0.00068 15.5 4.5 29 120-148 150-178 (194)
356 1d2z_A Death domain of pelle; 39.8 17 0.0007 15.4 4.3 44 48-91 35-81 (108)
357 3f1b_A TETR-like transcription 39.2 13 0.00053 16.1 2.0 50 34-83 22-73 (203)
358 3jth_A Transcription activator 38.9 17 0.00073 15.3 2.9 23 124-146 34-56 (98)
359 2o7t_A Transcriptional regulat 38.8 16 0.00065 15.6 2.4 31 41-71 25-55 (199)
360 1l3l_A Transcriptional activat 38.8 17 0.00073 15.3 3.3 27 122-148 184-210 (234)
361 3gzi_A Transcriptional regulat 38.6 16 0.00066 15.6 2.4 55 29-83 19-76 (218)
362 2fbk_A Transcriptional regulat 38.5 4.7 0.0002 18.8 -0.3 24 125-148 156-179 (181)
363 3obc_A Pyrophosphatase; dimeri 37.8 18 0.00076 15.2 5.6 20 28-47 12-31 (118)
364 3g1l_A Transcriptional regulat 37.6 17 0.00072 15.3 2.5 48 44-91 64-111 (256)
365 3hrs_A Metalloregulator SCAR; 37.5 18 0.00076 15.2 2.6 111 24-167 3-118 (214)
366 3clo_A Transcriptional regulat 37.3 18 0.00077 15.2 3.5 26 122-147 208-233 (258)
367 3egq_A TETR family transcripti 37.3 18 0.00077 15.2 3.3 39 42-80 22-60 (170)
368 2oer_A Probable transcriptiona 36.9 14 0.00058 15.9 1.9 43 42-84 42-84 (214)
369 3bjb_A Probable transcriptiona 35.7 19 0.00078 15.1 2.4 42 43-84 41-82 (207)
370 2bgc_A PRFA; bacterial infecti 35.6 19 0.00082 15.0 3.2 46 125-173 168-227 (238)
371 2jj7_A Hemolysin II regulatory 35.5 17 0.00072 15.3 2.2 38 33-70 16-53 (186)
372 3kkc_A TETR family transcripti 35.2 16 0.00069 15.4 2.1 29 43-71 31-59 (177)
373 2vke_A Tetracycline repressor 35.2 19 0.00081 15.0 2.4 36 41-76 20-55 (207)
374 2ev1_A Hypothetical protein RV 34.8 18 0.00076 15.2 2.2 27 127-153 79-105 (222)
375 2qwt_A Transcriptional regulat 34.6 20 0.00085 14.9 2.5 41 43-83 31-71 (196)
376 2q0o_A Probable transcriptiona 34.6 20 0.00085 14.9 3.5 27 122-148 186-212 (236)
377 3f6v_A Possible transcriptiona 34.3 14 0.0006 15.8 1.6 24 123-146 68-91 (151)
378 1t56_A EThr repressor; helix-t 34.2 21 0.00086 14.9 3.1 42 43-84 43-84 (216)
379 2guh_A Putative TETR-family tr 34.2 21 0.00086 14.8 2.6 28 43-70 58-85 (214)
380 1y66_A Engrailed homeodomain; 33.9 7.5 0.00032 17.5 0.2 36 28-63 4-43 (52)
381 3c3w_A Two component transcrip 33.6 21 0.00088 14.8 3.5 25 123-147 161-185 (225)
382 1lva_A Selenocysteine-specific 33.3 21 0.00089 14.8 4.6 33 27-59 66-104 (258)
383 1p4x_A Staphylococcal accessor 33.1 20 0.00082 15.0 2.2 22 43-64 49-70 (250)
384 2eh3_A Transcriptional regulat 33.0 21 0.0009 14.7 2.7 39 42-80 20-58 (179)
385 2qib_A TETR-family transcripti 32.9 22 0.00091 14.7 2.4 41 43-83 32-72 (231)
386 3a02_A Homeobox protein arista 32.7 22 0.00091 14.7 2.6 21 150-170 21-41 (60)
387 1jgg_A Segmentation protein EV 32.2 22 0.00093 14.7 2.6 17 152-168 25-41 (60)
388 1qgp_A Protein (double strande 32.1 22 0.00093 14.6 3.5 19 45-63 32-50 (77)
389 1y6u_A XIS, excisionase from t 31.9 22 0.00094 14.6 2.7 27 124-150 14-40 (70)
390 1rkt_A Protein YFIR; transcrip 31.8 19 0.00081 15.0 1.9 44 36-79 22-67 (205)
391 3nnr_A Transcriptional regulat 31.4 23 0.00096 14.6 2.5 28 42-69 23-50 (228)
392 2of7_A Putative TETR-family tr 30.4 24 0.001 14.5 2.7 37 33-69 57-93 (260)
393 2g7l_A TETR-family transcripti 30.3 15 0.00063 15.7 1.2 28 42-69 37-64 (243)
394 3f0c_A TETR-molecule A, transc 30.3 20 0.00084 14.9 1.8 51 42-92 29-79 (216)
395 2g7g_A RHA04620, putative tran 30.2 17 0.00071 15.4 1.5 26 44-69 29-54 (213)
396 3bru_A Regulatory protein, TET 30.1 24 0.001 14.4 2.7 41 41-81 47-87 (222)
397 2vi6_A Homeobox protein nanog; 30.1 24 0.001 14.4 2.7 18 131-148 35-52 (62)
398 1ig7_A Homeotic protein MSX-1; 29.9 24 0.001 14.4 2.6 17 131-147 32-48 (58)
399 3c2b_A Transcriptional regulat 29.8 24 0.001 14.4 5.1 49 23-71 14-62 (221)
400 2iai_A Putative transcriptiona 29.7 23 0.00096 14.6 2.0 50 32-81 38-87 (230)
401 2i10_A Putative TETR transcrip 29.6 24 0.001 14.4 3.0 32 40-71 27-58 (202)
402 2opt_A Actii protein; helical 29.6 24 0.001 14.4 2.6 31 40-70 22-52 (234)
403 2fbq_A Probable transcriptiona 29.5 25 0.001 14.4 2.8 44 33-76 16-59 (235)
404 2rek_A Putative TETR-family tr 29.2 25 0.001 14.3 3.1 52 32-84 24-75 (199)
405 2iu5_A DHAS, hypothetical prot 29.0 25 0.0011 14.3 2.2 38 32-69 18-58 (195)
406 2pjp_A Selenocysteine-specific 28.9 18 0.00074 15.3 1.3 92 22-143 2-97 (121)
407 2q1z_A RPOE, ECF SIGE; ECF sig 28.9 9 0.00038 17.1 -0.1 28 120-147 145-172 (184)
408 1r1t_A Transcriptional repress 28.8 25 0.0011 14.3 3.8 24 124-147 57-80 (122)
409 3kz9_A SMCR; transcriptional r 28.7 25 0.0011 14.3 4.4 41 43-83 36-76 (206)
410 2hyj_A Putative TETR-family tr 28.5 17 0.00071 15.4 1.2 52 32-83 20-71 (200)
411 1e0g_A Membrane-bound lytic mu 28.3 17 0.0007 15.4 1.1 18 75-92 12-29 (48)
412 1z0x_A Transcriptional regulat 28.1 21 0.00088 14.8 1.6 48 34-81 13-63 (220)
413 2qtq_A Transcriptional regulat 28.0 26 0.0011 14.2 4.5 69 23-91 15-83 (213)
414 1uly_A Hypothetical protein PH 28.0 26 0.0011 14.2 3.8 33 41-84 30-62 (192)
415 3bqy_A Putative TETR family tr 27.8 26 0.0011 14.2 4.5 45 31-75 9-53 (209)
416 3bqz_B HTH-type transcriptiona 27.4 27 0.0011 14.1 4.6 47 33-79 11-57 (194)
417 3me5_A Cytosine-specific methy 27.3 27 0.0011 14.1 3.3 31 42-72 27-63 (482)
418 2k40_A Homeobox expressed in E 27.2 27 0.0011 14.1 2.9 18 131-148 33-50 (67)
419 3hot_A Transposable element ma 26.2 28 0.0012 14.0 8.9 82 40-150 18-110 (345)
420 1rr7_A Middle operon regulator 25.7 29 0.0012 14.0 4.1 63 71-149 52-115 (129)
421 3o60_A LIN0861 protein; PSI, M 25.6 29 0.0012 13.9 5.4 59 25-83 17-79 (185)
422 3geu_A Intercellular adhesion 25.6 29 0.0012 13.9 4.5 46 26-71 5-50 (189)
423 1ftt_A TTF-1 HD, thyroid trans 25.6 29 0.0012 13.9 2.6 18 151-168 25-42 (68)
424 1tc3_C Protein (TC3 transposas 25.3 29 0.0012 13.9 4.1 30 120-149 15-44 (51)
425 2hxi_A Putative transcriptiona 25.3 29 0.0012 13.9 2.6 29 42-70 47-75 (241)
426 3nrg_A TETR family transcripti 25.3 29 0.0012 13.9 2.1 54 26-79 15-68 (217)
427 3dew_A Transcriptional regulat 25.2 29 0.0012 13.9 4.9 47 25-71 9-55 (206)
428 1wh5_A ZF-HD homeobox family p 25.1 29 0.0012 13.9 3.5 36 116-151 30-73 (80)
429 2ek5_A Predicted transcription 25.0 30 0.0012 13.9 5.3 35 29-63 6-47 (129)
430 2z4s_A Chromosomal replication 24.9 12 0.00052 16.2 0.0 27 55-81 243-273 (440)
431 3f6o_A Probable transcriptiona 24.7 30 0.0013 13.8 3.5 21 43-63 30-50 (118)
432 2r3s_A Uncharacterized protein 24.4 30 0.0013 13.8 3.4 24 42-65 37-60 (335)
433 2dg7_A Putative transcriptiona 24.1 31 0.0013 13.8 4.3 48 24-71 7-54 (195)
434 2e18_A NH(3)-dependent NAD(+) 24.0 31 0.0013 13.7 7.2 75 71-146 156-231 (257)
435 1k61_A Mating-type protein alp 23.7 31 0.0013 13.7 2.7 17 131-147 33-49 (60)
436 2da3_A Alpha-fetoprotein enhan 23.5 29 0.0012 13.9 1.7 22 129-150 47-68 (80)
437 2ecb_A Zinc fingers and homeob 23.4 28 0.0012 14.1 1.5 20 130-149 42-61 (89)
438 1x2n_A Homeobox protein pknox1 23.2 32 0.0013 13.7 2.7 21 130-150 41-61 (73)
439 2djp_A Hypothetical protein SB 23.2 15 0.00065 15.6 0.2 15 76-90 26-40 (77)
440 1puf_B PRE-B-cell leukemia tra 23.1 32 0.0014 13.6 2.6 19 152-170 28-46 (73)
441 3by6_A Predicted transcription 23.1 32 0.0014 13.6 2.8 36 28-63 12-54 (126)
442 2p4w_A Transcriptional regulat 22.9 32 0.0014 13.6 5.8 42 22-63 2-47 (202)
443 3ni7_A Bacterial regulatory pr 22.9 32 0.0014 13.6 3.1 36 36-71 17-54 (213)
444 2ras_A Transcriptional regulat 22.8 33 0.0014 13.6 4.5 44 26-69 13-56 (212)
445 2gen_A Probable transcriptiona 22.8 33 0.0014 13.6 4.8 53 31-83 14-66 (197)
446 2kko_A Possible transcriptiona 22.7 33 0.0014 13.6 3.4 24 123-146 35-58 (108)
447 3a03_A T-cell leukemia homeobo 22.6 33 0.0014 13.6 2.7 17 131-147 29-45 (56)
448 1zq3_P PRD-4, homeotic bicoid 22.6 33 0.0014 13.6 2.6 20 150-169 24-43 (68)
449 2da5_A Zinc fingers and homeob 22.4 33 0.0014 13.6 2.2 20 131-150 39-58 (75)
450 3dpj_A Transcription regulator 22.4 33 0.0014 13.6 5.6 57 26-82 10-66 (194)
451 1yz8_P Pituitary homeobox 2; D 22.4 33 0.0014 13.6 2.1 21 129-149 33-53 (68)
452 3he0_A Transcriptional regulat 22.2 34 0.0014 13.5 3.9 41 31-71 18-58 (196)
453 2dmu_A Homeobox protein goosec 22.2 34 0.0014 13.5 2.9 18 131-148 39-56 (70)
454 2kt0_A Nanog, homeobox protein 22.0 34 0.0014 13.5 2.6 20 150-169 44-63 (84)
455 3nau_A Zinc fingers and homeob 22.0 34 0.0014 13.5 2.7 22 149-170 25-46 (66)
456 2w53_A Repressor, SMet; antibi 22.0 34 0.0014 13.5 2.5 44 40-83 27-70 (219)
457 2e1o_A Homeobox protein PRH; D 21.9 34 0.0014 13.5 2.6 20 151-170 30-49 (70)
458 3hta_A EBRA repressor; TETR fa 21.8 34 0.0014 13.5 5.6 60 24-83 28-87 (217)
459 1bia_A BIRA bifunctional prote 21.8 34 0.0014 13.5 2.6 22 43-64 18-39 (321)
460 2v57_A TETR family transcripti 21.7 34 0.0014 13.5 2.7 46 39-84 27-72 (190)
461 2da2_A Alpha-fetoprotein enhan 21.7 34 0.0014 13.5 2.7 21 150-170 29-49 (70)
462 2dg8_A Putative TETR-family tr 21.6 34 0.0015 13.5 4.6 61 23-83 8-68 (193)
463 2gqq_A Leucine-responsive regu 21.5 6.5 0.00027 17.9 -2.0 26 118-143 19-44 (163)
464 2da1_A Alpha-fetoprotein enhan 21.4 35 0.0015 13.4 2.9 18 131-148 39-56 (70)
465 2dmp_A Zinc fingers and homeob 21.4 35 0.0015 13.4 1.7 21 130-150 44-64 (89)
466 2djn_A Homeobox protein DLX-5; 21.2 35 0.0015 13.4 2.7 20 150-169 29-48 (70)
467 2id6_A Transcriptional regulat 21.2 35 0.0015 13.4 4.7 53 27-79 8-60 (202)
468 1ahd_P Antennapedia protein mu 21.0 35 0.0015 13.4 2.7 21 130-150 33-53 (68)
469 2dmq_A LIM/homeobox protein LH 20.7 36 0.0015 13.3 2.8 19 131-149 39-57 (80)
470 3c07_A Putative TETR-family tr 20.4 37 0.0015 13.3 2.7 36 43-78 60-95 (273)
471 1nk2_P Homeobox protein VND; h 20.4 37 0.0015 13.3 2.6 20 150-169 31-50 (77)
472 2h1k_A IPF-1, pancreatic and d 20.4 37 0.0015 13.3 2.7 20 150-169 25-44 (63)
473 3eet_A Putative GNTR-family tr 20.4 37 0.0015 13.3 3.8 48 16-63 18-72 (272)
474 3crj_A Transcription regulator 20.3 37 0.0015 13.3 5.1 46 30-75 20-65 (199)
475 2x4h_A Hypothetical protein SS 20.1 37 0.0016 13.3 3.4 114 22-167 12-127 (139)
476 1bw5_A ISL-1HD, insulin gene e 20.0 37 0.0016 13.3 2.6 20 151-170 26-45 (66)
No 1
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=99.69 E-value=1.5e-16 Score=120.74 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCC
Q ss_conf 9999999999999985998899999848999999988779988899999999998289999961453221000
Q gi|254781218|r 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRY 100 (205)
Q Consensus 28 ~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~ 100 (205)
..+++|+|||.+|+.+||||++||+.+|||+++||+||+|.+.|+++.|.+||++|+|++|||+++...+...
T Consensus 6 ~~~~~g~rlk~~R~~~gltq~elA~~~gvs~~~vs~~E~g~~~Ps~~~l~~ia~~l~vs~~~Ll~~~~~~~~~ 78 (114)
T 3op9_A 6 IQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQEDKVW 78 (114)
T ss_dssp CCCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHTCCCC--CC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCC
T ss_conf 9999999999999985999999976108873279999658789999999999999599899992887534310
No 2
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=99.69 E-value=2.4e-16 Score=119.42 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 99999999999998599889999984899999998877998889999999999828999996145322
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~ 96 (205)
.+.||.|||.+|+.+||||++||..+|||+++||+||+|.+.|+++.+.+||++|+|+++||+.++..
T Consensus 10 ~~~ig~rlk~~R~~~gltq~elA~~lgvs~s~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~~~~~ 77 (126)
T 3ivp_A 10 FRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASS 77 (126)
T ss_dssp THHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 99999999999998499999996730999879999970777999999999999979689998288875
No 3
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=99.65 E-value=3.4e-16 Score=118.50 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHC--CCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
Q ss_conf 99999999999999985998899999848--9999999887799888999999999982899999614
Q gi|254781218|r 27 QYWKDVGTRIKDIRKANNKTQKEMAIGAN--QLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 (205)
Q Consensus 27 ~~~~~iG~rik~lR~~~gltQ~elA~~~g--is~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ 92 (205)
++.+.||+|||.+|+.+||||++||+.+| ||+++||+||+|.+.|+++.|.+||++|+|+++||+.
T Consensus 4 ~~~~~ig~rir~~R~~~gltq~elA~~~g~~is~~~is~~E~G~~~ps~~~l~~la~~l~v~~~~LlP 71 (71)
T 2ewt_A 4 EYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELLP 71 (71)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGGGCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
T ss_conf 89999999999999884998999998988874799999998599667689999999998968999789
No 4
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.64 E-value=6.8e-16 Score=116.65 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 689999999999999999859988999998489999999887799888999999999982899999614532
Q gi|254781218|r 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 24 ~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
+-..+...||+|||.+|+++||||++||..+|+|.++||+||+|...|++..|.+||++|+|+++|||.++.
T Consensus 4 ~d~~~~~~ig~rir~~R~~~gls~~~lA~~~gvs~~~ls~iE~g~~~ps~~~l~~ia~~l~v~~~~l~~~~~ 75 (192)
T 1y9q_A 4 TDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDP 75 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTST
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf 377889999999999999819999999999893999999998699877634799999885568999547996
No 5
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=99.63 E-value=4e-15 Score=111.89 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 99999999998599889999984899999998877998-889999999999828999996145322
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWIYDGEVI 96 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~-~psi~~l~~la~~~~vs~d~Ll~ge~~ 96 (205)
||+|||.+|+.+||||.+||+++|+++++|++||+|.. .|+++.+..||++|+|+++||+++...
T Consensus 2 iG~rlr~lR~~~g~tq~~lA~~~Gvs~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l~~~~~~ 67 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHE 67 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCCTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 799999999983999999987849889999999879989999999999999989879998489866
No 6
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=99.61 E-value=1.6e-15 Score=114.45 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCH
Q ss_conf 3455467779999999997298389999997799999999741488999899999999828999995247210254
Q gi|254781218|r 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 (205)
Q Consensus 106 ~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~~~~ 181 (205)
....|-..||.|||.+|+.+||||.+||+.+|+++++|++||+|.+.|+++.+.+||.+|||+++|||.+......
T Consensus 5 ~~~~d~~~ig~rlk~~R~~~gltq~elA~~lgvs~s~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~~~~~~~~ 80 (126)
T 3ivp_A 5 EDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVK 80 (126)
T ss_dssp TTSCCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCC
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCC
T ss_conf 1113899999999999998499999996730999879999970777999999999999979689998288875435
No 7
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=99.61 E-value=1.6e-15 Score=114.43 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 999999999985998899999848999999988779988899999999998289999961453
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge 94 (205)
||+|||.+|+.+||||++||+.+|+++++|++||+|...|+++.+.+||++|+|+++||+.||
T Consensus 6 ig~rlr~~R~~~glsq~~la~~~gvs~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~ll~gd 68 (68)
T 2r1j_L 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGD 68 (68)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHHCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 999999999985999999988739999999999879989999999999999799799985878
No 8
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=99.61 E-value=1.5e-15 Score=114.63 Aligned_cols=72 Identities=13% Similarity=0.038 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 89999999999999999859988999998489999999887799-8889999999999828999996145322
Q gi|254781218|r 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDWIYDGEVI 96 (205)
Q Consensus 25 ~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~-~~psi~~l~~la~~~~vs~d~Ll~ge~~ 96 (205)
.+...+.+|+|||.+|+++||||++||+++|+|+++||+||+|+ .+||+..|.+||++|+|++.+|+.++..
T Consensus 4 ~~~~~~~lg~rir~lR~~~gltl~eLA~~~GvS~~~lS~iE~G~~~~psl~~L~kia~aL~v~~~~l~~~~~~ 76 (198)
T 2bnm_A 4 TKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGN 76 (198)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCC
T ss_conf 0366899999999999985999999998879799999986738988998999999999979799998186422
No 9
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=99.60 E-value=4.1e-17 Score=124.21 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=54.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 10001566899999999999999998599889999984899999998877998889999999999828999996145322
Q gi|254781218|r 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 (205)
Q Consensus 17 ~~~~~~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~ 96 (205)
-++-+.++..++..++|++||.+|+.+||||++||+++||++++|++||+|.+.|+++.|.+||++|+|+++||+.|+..
T Consensus 9 ~~~~~~~~n~~~~~~~~~~Lk~lR~~~glTq~elA~~lgvs~~tis~~E~G~~~Ps~~~L~kla~~l~vs~~~ll~~~~~ 88 (111)
T 3mlf_A 9 SGVDLGTENLYFQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEY 88 (111)
T ss_dssp ------CTTTSCCCSSCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGEECCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCH
T ss_conf 34576500789999999999999998599999999996989999999984999999999999999989489999179842
No 10
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=99.60 E-value=2.5e-15 Score=113.16 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 9999999999859988999998489999999887799888999999999982899999614532
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
||+|||.+|+.+|+||++||+++|+++++|++||+|...|+++.+.+||++|+|+++||+.|+.
T Consensus 6 ig~rik~~R~~~glsq~~la~~~gvs~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~ll~~~~ 69 (76)
T 1adr_A 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDL 69 (76)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHHHTCS
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 9999999999939999999999796999999998799899999999999996988999957999
No 11
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=99.60 E-value=2.7e-15 Score=112.99 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 67779999999997298389999997799999999741488999899999999828999995247210
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~ 178 (205)
...+|+|||.+|+.+||||.+||+.+|++++++++||+|++.|+++.+.+||++|||++|||+.++..
T Consensus 7 ~~~~g~rlk~~R~~~gltq~elA~~~gvs~~~vs~~E~g~~~Ps~~~l~~ia~~l~vs~~~Ll~~~~~ 74 (114)
T 3op9_A 7 QHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQE 74 (114)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 99999999999998599999997610887327999965878999999999999959989999288753
No 12
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=99.59 E-value=1.9e-15 Score=113.96 Aligned_cols=66 Identities=24% Similarity=0.445 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 677799999999972983899999977999999997414889998999999998289999952472
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~ 176 (205)
...+|+|||.+|+.+||||.+||+.+|++++++++||+|++.|+.+.+.+||++|+|+++||++||
T Consensus 3 ~~~ig~rlr~~R~~~glsq~~la~~~gvs~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~ll~gd 68 (68)
T 2r1j_L 3 TQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGD 68 (68)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHHCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 899999999999985999999988739999999999879989999999999999799799985878
No 13
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=99.58 E-value=5.3e-15 Score=111.15 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 99999999999999859988999998489999999887799888999999999982899999614532
Q gi|254781218|r 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 28 ~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
....||+|||.+|+.+||||++||+++|+++++||+||+|.+.|+++.+.+||++|+|+++||+.+..
T Consensus 25 ~~~~iG~rLk~~R~~~glSq~~lA~~~gis~~~ls~~E~g~~~ps~~~l~~ia~~l~v~~~~ll~~~~ 92 (117)
T 3f52_A 25 LREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAA 92 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHCCC
T ss_conf 99999999999999819999999988533399999998699899999999999998997999962444
No 14
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=99.57 E-value=7.8e-15 Score=110.11 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCC
Q ss_conf 9999999999999859988999998489999999887799888999999999982899999614532210000
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~ 101 (205)
...+|+|||.+|+.+|+||++||+.+|+++++|++||+|.+.|+++.+..||++|+|+++||+.+...+....
T Consensus 7 ~~~f~~~Lk~lr~~~~lsq~elA~~lgvs~~~is~~e~G~~~ps~~~l~~la~~l~v~~~~l~~~~~~~~~~~ 79 (94)
T 2kpj_A 7 KAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKLNIDTV 79 (94)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHSCSCCCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCC
T ss_conf 9999999999999949989999998892883699997376799999999999998978999908887778876
No 15
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=99.57 E-value=9.2e-16 Score=115.86 Aligned_cols=74 Identities=24% Similarity=0.274 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf 34554677799999999972983899999977999999997414889998999999998289999952472102
Q gi|254781218|r 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 (205)
Q Consensus 106 ~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~~ 179 (205)
........+|.+||.+|+.+||||++||+.+|+++++|++||+|.+.|+++.+.+||++|||+++|||.|++..
T Consensus 16 ~n~~~~~~~~~~Lk~lR~~~glTq~elA~~lgvs~~tis~~E~G~~~Ps~~~L~kla~~l~vs~~~ll~~~~~~ 89 (111)
T 3mlf_A 16 ENLYFQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEYE 89 (111)
T ss_dssp TTTSCCCSSCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGEECCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCHH
T ss_conf 07899999999999999985999999999969899999999849999999999999999894899991798423
No 16
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=99.57 E-value=4.6e-15 Score=111.55 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf 9999999999985998899999848999999988779988899999999998289999961453221
Q gi|254781218|r 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 (205)
Q Consensus 31 ~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~ 97 (205)
.||+|||.+|+.+||||++||+.+|+++++|++||+|...|+ +.+.+||++|+|+++||+.|+..+
T Consensus 3 ~i~~rik~~r~~~gltq~elA~~~gis~~~is~~e~g~~~~~-~~l~~ia~~l~v~~~~Ll~g~~~~ 68 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQYGTKRG 68 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSC-STHHHHHHHTTSCHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCH-HHHHHHHHHHCCCHHHHHCCCCCC
T ss_conf 899999999999399999997841989999999987999999-999999999499799984199866
No 17
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=99.57 E-value=8.7e-15 Score=109.82 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 999999999999999985998899999848999999988779988899999999998289999961453
Q gi|254781218|r 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 (205)
Q Consensus 26 ~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge 94 (205)
.+..+.||.+||.+|+.+|+||++||..+|+++++|++||+|...|+++.+.+||++|+|+++||+.+.
T Consensus 5 ~~~~~~ig~~ir~~R~~~gltq~~lA~~~gvs~~~i~~~E~g~~~ps~~~l~~la~~l~v~~~~l~~~~ 73 (77)
T 2b5a_A 5 IEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKM 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 899999999999999981999999998979699999999879989999999999999798899985432
No 18
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.57 E-value=7e-15 Score=110.41 Aligned_cols=68 Identities=25% Similarity=0.364 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 46777999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 110 d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
....||+|||.+|+.+||||.+||+.+|++++++++||+|+..|++..|.+||++|||+++|||.++.
T Consensus 8 ~~~~ig~rir~~R~~~gls~~~lA~~~gvs~~~ls~iE~g~~~ps~~~l~~ia~~l~v~~~~l~~~~~ 75 (192)
T 1y9q_A 8 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDP 75 (192)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTST
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf 89999999999999819999999999893999999998699877634799999885568999547996
No 19
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=99.56 E-value=5.8e-15 Score=110.92 Aligned_cols=67 Identities=24% Similarity=0.420 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 7779999999997298389999997799999999741488999899999999828999995247210
Q gi|254781218|r 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 (205)
Q Consensus 112 ~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~ 178 (205)
..+|+|||.+|+.+||||.+||+.+|++++++++||+|++.|+.+.+.+||++|+|+++||+.|+..
T Consensus 4 ~~ig~rik~~R~~~glsq~~la~~~gvs~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~ll~~~~~ 70 (76)
T 1adr_A 4 QLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLS 70 (76)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 9999999999999399999999997969999999987998999999999999969889999579996
No 20
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=99.55 E-value=5.8e-15 Score=110.90 Aligned_cols=63 Identities=24% Similarity=0.417 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 9999999999859988999998489999999887799888999999999982899999614532
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
||+|||.+|+.+||||++||+.+|+++++|++||+|.. |+++.+.+||++|+|+++||++|+.
T Consensus 2 ig~rik~~R~~~gltq~elA~~~gis~~~~~~~e~g~~-~~~~~l~~ia~~l~v~~~~l~~g~~ 64 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNGTS 64 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC-SSCTTHHHHHHHTTCCHHHHHHCC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCC-CCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 89999999999499999998863989999999986999-8999999999996988999828999
No 21
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=99.55 E-value=1.8e-14 Score=107.82 Aligned_cols=65 Identities=31% Similarity=0.378 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 7999999999729838999999779999999974148-8999899999999828999995247210
Q gi|254781218|r 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWIYFGDEV 178 (205)
Q Consensus 114 iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~-~~Ps~~~l~kIa~~lgvs~d~L~~G~e~ 178 (205)
||+|||.+|+.+||||.+||+.+|++++++++||+|. ..|+++.+.+||.+|||+++|||.+...
T Consensus 2 iG~rlr~lR~~~g~tq~~lA~~~Gvs~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l~~~~~~ 67 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHE 67 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCCTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 799999999983999999987849889999999879989999999999999989879998489866
No 22
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=99.55 E-value=1.2e-14 Score=108.90 Aligned_cols=69 Identities=19% Similarity=0.077 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 999999999999998599889999984899999998877998-889999999999828999996145322
Q gi|254781218|r 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWIYDGEVI 96 (205)
Q Consensus 28 ~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~-~psi~~l~~la~~~~vs~d~Ll~ge~~ 96 (205)
..+.||+||+.+|+++||||.+||+.+|+++++|++||+|.. .|+++.+.+||++|+|++++|++.+..
T Consensus 4 ~~~~i~~ri~~lr~~~gls~~~LA~~~Gis~~tis~~e~g~~~~p~~~~l~kia~~l~v~~~~l~~~~~~ 73 (78)
T 3b7h_A 4 DGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFDFPPY 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCC
T ss_conf 7999999999999993998999999889399999999869988968999999999989939999099843
No 23
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=99.55 E-value=1.6e-15 Score=114.33 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 89999999999999999859988999998489999999887799888999999999982899999614532
Q gi|254781218|r 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 25 ~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
|....+.+|.|||.+|+.+||||++||+++|+++++||+||+|...|+++.+.+||++|+|+++||++|+.
T Consensus 4 M~~~~~~i~~rik~~r~~~gltq~~lA~~~gvs~~tis~~e~g~~~p~~~~l~~ia~~l~v~~~~ll~~~~ 74 (76)
T 3bs3_A 4 MSNNQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKI 74 (76)
T ss_dssp ------CCCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBC---
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 22679999999999999909989999999888999999998599999999999999997997999966887
No 24
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=99.55 E-value=1.2e-14 Score=109.00 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
Q ss_conf 999999999999859988999998489999999887799888999999999982899999614
Q gi|254781218|r 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 (205)
Q Consensus 30 ~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ 92 (205)
..||++||.+|+.+||||++||..+|+++++|++||+|...|+++.+.+||++|+|++++||.
T Consensus 12 ~~ig~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~lF~ 74 (74)
T 1y7y_A 12 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELFC 74 (74)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC-
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
T ss_conf 999999999999819999999989697999999998799899999999999998939999847
No 25
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=99.55 E-value=1.7e-14 Score=108.06 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=70.1
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 001566899999999999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 19 ~~~~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
-+++++..+..+.+|+.|+.+|+.+||||++||+.+|+++++||+||+|.+.|+++.|..||++|+|++++|+..
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~R~~~glTQ~~lA~~lgis~~~is~~E~G~~~~s~~~l~~la~~l~v~~~~l~~~ 79 (92)
T 1lmb_3 5 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPS 79 (92)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 999989999999999999999999299999999988478989999977998999999999999989879999766
No 26
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4}
Probab=99.54 E-value=3.7e-16 Score=118.32 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 99999999998599889999984899999998877998889999999999828999996145322
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~ 96 (205)
||+|||.+|+.+||||.+||+.+|+|+++||+||+|.+.|+.++|..||++|+|+++||++++..
T Consensus 2 iG~rik~lR~~~glsq~eLA~~~Gis~~~is~~E~G~~~ps~~~l~~la~~l~v~~~~ll~~~~~ 66 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDKM 66 (158)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 78999999998499999999998959999999987998999999999999939989998368755
No 27
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=99.54 E-value=3.3e-15 Score=112.45 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 99999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
|+.|||.+|+.+|+||++||+.+|+++++|++||+|...|+++.+.+||++|+|+++||+.+
T Consensus 9 i~~rIk~~r~~~g~tq~~lA~~lgis~~~is~~e~G~~~p~~~~l~~ia~~~~v~~~~Ll~~ 70 (73)
T 3omt_A 9 IFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVS 70 (73)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
T ss_conf 99999999999399899999985998667899984988998679999999989489998165
No 28
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=99.53 E-value=9.4e-15 Score=109.63 Aligned_cols=65 Identities=23% Similarity=0.429 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 779999999997298389999997799999999741488999899999999828999995247210
Q gi|254781218|r 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 (205)
Q Consensus 113 ~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~ 178 (205)
.||.|||.+|+.+||||.+||+.+|++++++++||+|++ |+.+.+.+||++|||+++||++|++.
T Consensus 1 ~ig~rik~~R~~~gltq~elA~~~gis~~~~~~~e~g~~-~~~~~l~~ia~~l~v~~~~l~~g~~~ 65 (69)
T 1r69_A 1 SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNGTSD 65 (69)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC-SSCTTHHHHHHHTTCCHHHHHHCC--
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCC-CCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 989999999999499999998863989999999986999-89999999999969889998289997
No 29
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=99.53 E-value=1.3e-14 Score=108.79 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 779999999997298389999997799999999741488999899999999828999995247210
Q gi|254781218|r 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 (205)
Q Consensus 113 ~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~ 178 (205)
.+|.||+.+|+.+||||.|||+.+|++++++++||+|++.|+ ..+.+||++|||+++||++|++.
T Consensus 3 ~i~~rik~~r~~~gltq~elA~~~gis~~~is~~e~g~~~~~-~~l~~ia~~l~v~~~~Ll~g~~~ 67 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQYGTKR 67 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSC-STHHHHHHHTTSCHHHHHHSCCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCH-HHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 899999999999399999997841989999999987999999-99999999949979998419986
No 30
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=99.53 E-value=7.6e-15 Score=110.18 Aligned_cols=70 Identities=26% Similarity=0.442 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCH
Q ss_conf 777999999999--7298389999997799999999741488999899999999828999995247210254
Q gi|254781218|r 112 YAIGARLKSIRK--DKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 (205)
Q Consensus 112 ~~iG~rLk~lR~--~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~~~~ 181 (205)
..+|.+|+.+|+ ++||||.+||+.+|+++++|++||+|++.|++..+.+||++|||+++|+++|.....|
T Consensus 33 ~~iG~~I~~~R~~~~kglTQ~eLA~~lgvs~~~is~~E~G~~~ps~~~l~kia~~L~V~L~~~~~g~p~~~p 104 (107)
T 2jvl_A 33 KEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANIGAPRLGP 104 (107)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCBSSSSSTTBCSSSS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 999999999999988699899999998878999999985997899999999999949967665489988899
No 31
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=99.52 E-value=5e-14 Score=105.15 Aligned_cols=67 Identities=19% Similarity=0.155 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 9999999999999985998899999848999999988779988899999999998289999961453
Q gi|254781218|r 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 (205)
Q Consensus 28 ~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge 94 (205)
....||.+||.+|+.+|+||++||+.+|+++++|++||+|...|+++.+.+||++|+|++++||...
T Consensus 25 ~~~~ig~~Ik~lR~~~glsq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l~~~~ 91 (99)
T 3g5g_A 25 LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEML 91 (99)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 9999999999999981999999999979789889999869989999999999999699899997614
No 32
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=99.52 E-value=2e-14 Score=107.57 Aligned_cols=63 Identities=16% Similarity=0.278 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHC--CCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 677799999999972983899999977--999999997414889998999999998289999952
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lg--is~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~ 173 (205)
...+|.|||.+|+.+||||.|||+.+| ++++++++||+|++.|+++.+.+||++|||+++||+
T Consensus 6 ~~~ig~rir~~R~~~gltq~elA~~~g~~is~~~is~~E~G~~~ps~~~l~~la~~l~v~~~~Ll 70 (71)
T 2ewt_A 6 AKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL 70 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGGGC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
T ss_conf 99999999999988499899999898887479999999859966768999999999896899978
No 33
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=99.52 E-value=3.6e-14 Score=106.04 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 999999999999999859988999998489999999887799888999999999982899999614532
Q gi|254781218|r 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 27 ~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
.....||.+||.+|+.+||||++||+.+|+++++|++||+|...|+++.+..||++|+|++++|++...
T Consensus 7 ~~~~~i~~~lk~~R~~~glsq~~lA~~~gis~~~i~~~E~G~~~ps~~~l~~la~~l~i~~~~l~~~~~ 75 (82)
T 3clc_A 7 FLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLI 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCCCBHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCH
T ss_conf 999999999999999839999999570399887999998599899999999999997988999977068
No 34
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=99.52 E-value=3.8e-14 Score=105.85 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 1566899999999999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 21 ~~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
|+++..+..+.+|..++..|+..||||++||+.+|+++++|++||||.+.|+++.+.+||++|+|++++|+.+
T Consensus 2 ~t~e~~~~~~~l~~~~~~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~~~~~ 74 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPS 74 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCHH
T ss_conf 8989999999999999999999399999996620988988999987997899999999999989889998748
No 35
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=99.52 E-value=2.4e-14 Score=107.15 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 99999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
.|++||.+|+.+||||.+||+.+|+|+++||+||+|.+.|+.+.+.+||++|+|++||+++.
T Consensus 9 PG~~Lk~~r~~~gltq~~lA~~lgvs~~~is~~e~G~~~~s~~~~~~la~~lgvs~~~ll~~ 70 (94)
T 2ict_A 9 PGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNL 70 (94)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf 89999999999699999999984963899869872764472999999999999099999743
No 36
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=99.51 E-value=5.8e-14 Score=104.72 Aligned_cols=67 Identities=16% Similarity=0.051 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 9999999999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 27 ~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
..+..||++||.+|+.+||||.+||+++|+++++||+||+|...|+++.+..||++|+|+++||+..
T Consensus 10 ~~~~~l~~~lk~~R~~~gltq~elA~~~gvs~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~~~ 76 (83)
T 3f6w_A 10 ARYQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSK 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999999998299999999897389999999987998999999999999959999999853
No 37
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=99.51 E-value=3.2e-14 Score=106.37 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf 67779999999997298389999997799999999741488-9998999999998289999952472102
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWIYFGDEVI 179 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~-~Ps~~~l~kIa~~lgvs~d~L~~G~e~~ 179 (205)
...+|+|||++|+.+|||+.+||+.+|+|++++|+||+|+. .|++..|.+||++|||++.|||.+.+..
T Consensus 8 ~~~lg~rir~lR~~~gltl~eLA~~~GvS~~~lS~iE~G~~~~psl~~L~kia~aL~v~~~~l~~~~~~~ 77 (198)
T 2bnm_A 8 STGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGND 77 (198)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCC
T ss_conf 8999999999999859999999988797999999867389889989999999999797999981864225
No 38
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=99.51 E-value=5.5e-15 Score=111.07 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 546777999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 109 ~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
|....++.||+.+|..+|+||.+||+.+|++++++++||+|.+.|+++.+.+||++|||+++|||.+++
T Consensus 4 m~~~~i~~rIk~~r~~~g~tq~~lA~~lgis~~~is~~e~G~~~p~~~~l~~ia~~~~v~~~~Ll~~~k 72 (73)
T 3omt_A 4 MTERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVSTK 72 (73)
T ss_dssp -CCCCCCBCHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBCCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf 348899999999999939989999998599866789998498899867999999998948999816578
No 39
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=99.51 E-value=9e-15 Score=109.72 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHH--HCCCHHHHHCCCCC
Q ss_conf 999999999985998899999848999999988779988899999999998--28999996145322
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE--YEISFDWIYDGEVI 96 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~--~~vs~d~Ll~ge~~ 96 (205)
||+|||.+|+.+||||++||+.+||++++|++||+|.+.|+++.+.+||++ |+++.+||+.|+..
T Consensus 5 ig~rik~~R~~~gltq~elA~~~Gis~~tis~~E~g~~~p~~~~l~~ia~~~~~~~~~~wll~~~~~ 71 (99)
T 2l49_A 5 ISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTNQIA 71 (99)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSSSSSSSSSSTTTSSCCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCC
T ss_conf 9999999999939999999999698999999998799879989999998603778647888569988
No 40
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=99.51 E-value=1.1e-13 Score=102.94 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=67.4
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 00156689999999999999999859988999998489999999887799-88899999999998289999961453
Q gi|254781218|r 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDWIYDGE 94 (205)
Q Consensus 19 ~~~~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~-~~psi~~l~~la~~~~vs~d~Ll~ge 94 (205)
.+++++.....+.||.+||.+|+ ++||.+||+++|+++++|++||+|. ..|+++++.+||++|+|++|+|+..-
T Consensus 4 ~p~t~~~~~~~~~lG~~lr~~R~--~~s~~elA~~~gis~~~is~iE~G~~~~~s~~~l~~ia~~L~v~~~~Ll~~~ 78 (86)
T 2ofy_A 4 VPLTAEELERGQRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVV 78 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHT--TSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCC
T ss_conf 99888999999999999999998--7899999999797999999998699788759999999999897899996244
No 41
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=99.50 E-value=4.8e-14 Score=105.27 Aligned_cols=67 Identities=22% Similarity=0.265 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 6777999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
...||+|||.+|+.+||||.+||+.+|+++++|++||+|.+.|+++.+.+||++|||+++||+.+..
T Consensus 26 ~~~iG~rLk~~R~~~glSq~~lA~~~gis~~~ls~~E~g~~~ps~~~l~~ia~~l~v~~~~ll~~~~ 92 (117)
T 3f52_A 26 REALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAA 92 (117)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHCCC
T ss_conf 9999999999999819999999988533399999998699899999999999998997999962444
No 42
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4}
Probab=99.50 E-value=2.2e-15 Score=113.48 Aligned_cols=69 Identities=29% Similarity=0.438 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCHH
Q ss_conf 799999999972983899999977999999997414889998999999998289999952472102545
Q gi|254781218|r 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPK 182 (205)
Q Consensus 114 iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~~~~~ 182 (205)
+|.|||++|+.+||||.+||+.+|++++++++||+|++.|+...+.+||.+|||+++||+.+++...+.
T Consensus 2 iG~rik~lR~~~glsq~eLA~~~Gis~~~is~~E~G~~~ps~~~l~~la~~l~v~~~~ll~~~~~~~~~ 70 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDKMLNPV 70 (158)
T ss_dssp -----------------------------------------------------------------CCHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCH
T ss_conf 789999999984999999999989599999999879989999999999999399899983687556822
No 43
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=99.50 E-value=2.4e-14 Score=107.16 Aligned_cols=66 Identities=21% Similarity=0.105 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 999999999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 28 ~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
..+.+|++|+.+|+.+||||++||+.+|+++++|++||+|...|+++.+.+||++|+|++++|+..
T Consensus 65 ~~~~~G~~l~~lR~~~glTQ~elA~~~gis~~~is~iE~G~~~ps~~~l~kia~~lgvs~~el~~~ 130 (141)
T 3kxa_A 65 ALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAA 130 (141)
T ss_dssp HHHHSSCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 899999999999998299899999998969999999987997899999999999949989999865
No 44
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=99.49 E-value=1.6e-14 Score=108.19 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 99999999985998899999848999999988779988899999999998289999961453
Q gi|254781218|r 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 (205)
Q Consensus 33 G~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge 94 (205)
++|||.+|+.+||||++||+.+|+++++|++||+|...|+++.+.+||++|+|++++||..+
T Consensus 3 ~nri~~lR~~~g~tq~~lA~~~gis~~~is~~e~g~~~ps~~~l~~ia~~l~v~~~~lf~~e 64 (66)
T 1utx_A 3 INNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQ 64 (66)
T ss_dssp EECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEEEC
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCC
T ss_conf 99999999984999999988729989999999879989999999999999897799982989
No 45
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=99.49 E-value=8.2e-14 Score=103.83 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 7779999999997298389999997799999999741488999899999999828999995247210
Q gi|254781218|r 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 (205)
Q Consensus 112 ~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~ 178 (205)
..+|.||+.+|+.+|+||.+||+.+|++++++++||+|.+.|+.+.+.+||.+|||+++||+.+...
T Consensus 8 ~~f~~~Lk~lr~~~~lsq~elA~~lgvs~~~is~~e~G~~~ps~~~l~~la~~l~v~~~~l~~~~~~ 74 (94)
T 2kpj_A 8 AIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKL 74 (94)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHSCSCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 9999999999999499899999988928836999973767999999999999989789999088877
No 46
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=99.48 E-value=2.2e-14 Score=107.30 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 99999999999999--8599889999984899999998877998889999999999828999996145322
Q gi|254781218|r 28 YWKDVGTRIKDIRK--ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 (205)
Q Consensus 28 ~~~~iG~rik~lR~--~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~ 96 (205)
....||.+|+.+|+ .+||||++||+.+|+++++||+||+|.+.|++++|.+||++|+|+++|++.|+..
T Consensus 31 v~~~iG~~I~~~R~~~~kglTQ~eLA~~lgvs~~~is~~E~G~~~ps~~~l~kia~~L~V~L~~~~~g~p~ 101 (107)
T 2jvl_A 31 VGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANIGAPR 101 (107)
T ss_dssp CCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCBSSSSSTTBCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 54999999999999988699899999998878999999985997899999999999949967665489988
No 47
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=99.48 E-value=1.7e-13 Score=101.81 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 467779999999997298389999997799999999741488-9998999999998289999952472
Q gi|254781218|r 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWIYFGD 176 (205)
Q Consensus 110 d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~-~Ps~~~l~kIa~~lgvs~d~L~~G~ 176 (205)
+...+|.||+.+|+.+||||.+||+.+|++++++++||+|++ .|+++.+.+||++|||++++||..+
T Consensus 4 ~~~~i~~ri~~lr~~~gls~~~LA~~~Gis~~tis~~e~g~~~~p~~~~l~kia~~l~v~~~~l~~~~ 71 (78)
T 3b7h_A 4 DGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFDFP 71 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHTCST
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHCCCC
T ss_conf 79999999999999939989999998893999999998699889689999999999899399990998
No 48
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=99.47 E-value=9.7e-14 Score=103.35 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 4677799999999972983899999977999999997414889998999999998289999952
Q gi|254781218|r 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 (205)
Q Consensus 110 d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~ 173 (205)
+-..+|++||.+|+.+||||.+||+.+|++++++++||+|+..|+++.+.+||++|||++++||
T Consensus 10 ~~~~ig~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~lF 73 (74)
T 1y7y_A 10 DLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF 73 (74)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
T ss_conf 9999999999999981999999998969799999999879989999999999999893999984
No 49
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=99.47 E-value=2.3e-14 Score=107.22 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 6777999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
...+|.||+.+|+.+||||.+||+.+|++++++++||+|++.|+++.+.+||++|+|+++||+.|+.
T Consensus 8 ~~~i~~rik~~r~~~gltq~~lA~~~gvs~~tis~~e~g~~~p~~~~l~~ia~~l~v~~~~ll~~~~ 74 (76)
T 3bs3_A 8 QQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKI 74 (76)
T ss_dssp --CCCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBC---
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 9999999999999909989999999888999999998599999999999999997997999966887
No 50
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=99.46 E-value=1.4e-13 Score=102.41 Aligned_cols=67 Identities=27% Similarity=0.306 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 6777999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
...+|.+||.+|+.+||||.++|+.+|++++++++||+|+..|+++.+.+||++|||+++|||.+.+
T Consensus 8 ~~~ig~~ir~~R~~~gltq~~lA~~~gvs~~~i~~~E~g~~~ps~~~l~~la~~l~v~~~~l~~~~e 74 (77)
T 2b5a_A 8 KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKME 74 (77)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 9999999999999819999999989796999999998799899999999999997988999854325
No 51
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=99.46 E-value=6.9e-14 Score=104.29 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 999999999999859988999998489999999887799888999999999982899999614532
Q gi|254781218|r 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 30 ~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
.+||++||.+|+.+||||++||+.+||++++|++||+|...|+++++.+||++|+|++.+...+..
T Consensus 12 ~~ig~~ik~~R~~~glsq~elA~~~gvs~~~is~~E~G~~~p~~~~l~kia~~L~v~L~~~~~~~~ 77 (91)
T 1x57_A 12 LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKP 77 (91)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSSTTTTCB
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999999819989999987198999999998799889999999999994998645557897
No 52
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=99.46 E-value=3e-14 Score=106.50 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 99999999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
.+.||++||.+|+.+||||++||.++|+++++|++||+|...|+++.+.+||++|+|++++++..
T Consensus 10 ~~~lg~~lr~~R~~~glsq~~lA~~~gvs~~~is~~E~g~~~ps~~~l~~ia~~lgv~~~~~~~~ 74 (88)
T 2wiu_B 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK 74 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC--
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999999998599999997863998999999987999999999999999969940864579
No 53
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=99.46 E-value=3.8e-14 Score=105.89 Aligned_cols=66 Identities=29% Similarity=0.435 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHH--HCCCHHHHHCCCCC
Q ss_conf 7799999999972983899999977999999997414889998999999998--28999995247210
Q gi|254781218|r 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV--TKKHLDWIYFGDEV 178 (205)
Q Consensus 113 ~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~--lgvs~d~L~~G~e~ 178 (205)
.||+|||.+|+.+||||.+||+.+||+++++++||+|++.|+.+.+.+||.+ |+++++||++|+..
T Consensus 4 ~ig~rik~~R~~~gltq~elA~~~Gis~~tis~~E~g~~~p~~~~l~~ia~~~~~~~~~~wll~~~~~ 71 (99)
T 2l49_A 4 TISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTNQIA 71 (99)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSSSSSSSSSSTTTSSCCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCC
T ss_conf 99999999999939999999999698999999998799879989999998603778647888569988
No 54
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=99.45 E-value=2.2e-13 Score=101.21 Aligned_cols=62 Identities=16% Similarity=0.063 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 99999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
.|++|+++|+.+|+||.+||+.+|+++++||+||+|++.|+.+++.+||++|+|+++++++.
T Consensus 19 PGe~Lke~~~~~gisq~eLA~~lGvs~~~is~~e~G~~~~s~~~a~~La~~lgvs~~~~l~l 80 (104)
T 3cec_A 19 PGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNL 80 (104)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 34999999998799899999997837899999975887898999999999989199999850
No 55
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=99.45 E-value=2.3e-13 Score=101.06 Aligned_cols=70 Identities=20% Similarity=0.154 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCH
Q ss_conf 7779999999997298389999997799999999741488999899999999828999995247210254
Q gi|254781218|r 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 (205)
Q Consensus 112 ~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~~~~ 181 (205)
..+|.+|+.+|+.+||||.+||+.+|+++++|++||+|.+.|++..+.+||++||++++|||..-+...|
T Consensus 13 ~~l~~~lk~~R~~~gltq~elA~~~gvs~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~~~~~~~~p 82 (83)
T 3f6w_A 13 QALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKLEAMTP 82 (83)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 9999999999998299999999897389999999987998999999999999959999999853013698
No 56
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=99.44 E-value=3.1e-13 Score=100.27 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 7799999999972983899999977999999997414889998999999998289999952472
Q gi|254781218|r 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 (205)
Q Consensus 113 ~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~ 176 (205)
-.|++|+++|+.+||||.+||+.+|++++++++||+|++.|+.+.+.+||++|||++|||+..+
T Consensus 8 hPG~~Lk~~r~~~gltq~~lA~~lgvs~~~is~~e~G~~~~s~~~~~~la~~lgvs~~~ll~~q 71 (94)
T 2ict_A 8 RPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQ 71 (94)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCH
T ss_conf 9899999999996999999999849638998698727644729999999999990999997433
No 57
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=99.43 E-value=2.9e-13 Score=100.43 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 0023213455467779999999997298389999997799999999741488999899999999828999995247
Q gi|254781218|r 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 (205)
Q Consensus 100 ~~~~~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G 175 (205)
..++.....+.|.-.|++|+++|+.+||||.+||+.+|++++++++||+|++.|+.+.+.+||++||++++||+.-
T Consensus 5 ~~~~~~~~~~~p~hPGe~Lke~~~~~gisq~eLA~~lGvs~~~is~~e~G~~~~s~~~a~~La~~lgvs~~~~l~l 80 (104)
T 3cec_A 5 WQDITDDRLVRPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNL 80 (104)
T ss_dssp ---------CCCCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 2345534568998834999999998799899999997837899999975887898999999999989199999850
No 58
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=99.42 E-value=1.8e-13 Score=101.70 Aligned_cols=67 Identities=24% Similarity=0.225 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 6777999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
...+|++|+.+|+.+||||.+||+.+|+++++|++||+|...|+++.+.+||++||++++||+...+
T Consensus 66 ~~~~G~~l~~lR~~~glTQ~elA~~~gis~~~is~iE~G~~~ps~~~l~kia~~lgvs~~el~~~~e 132 (141)
T 3kxa_A 66 LKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFE 132 (141)
T ss_dssp HHHSSCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999999829989999999896999999998799789999999999994998999986554
No 59
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=99.42 E-value=6.7e-13 Score=98.17 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 677799999999972983899999977999999997414889998999999998289999952472
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~ 176 (205)
...+|.+||.+|+.+||||.+||+.+|++++++++||+|++.|++..+.+||++|||++++||..+
T Consensus 26 ~~~ig~~Ik~lR~~~glsq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l~~~~ 91 (99)
T 3g5g_A 26 LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEML 91 (99)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 999999999999981999999999979789889999869989999999999999699899997614
No 60
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=99.41 E-value=1.5e-13 Score=102.25 Aligned_cols=63 Identities=29% Similarity=0.321 Sum_probs=59.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 115 G~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
+.||+.+|..+||||.+||+.+|++++++++||+|++.|+++.+.+||++|||++++||..++
T Consensus 3 ~nri~~lR~~~g~tq~~lA~~~gis~~~is~~e~g~~~ps~~~l~~ia~~l~v~~~~lf~~e~ 65 (66)
T 1utx_A 3 INNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQP 65 (66)
T ss_dssp EECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEEECC
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf 999999999849999999887299899999998799899999999999998977999829899
No 61
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=99.41 E-value=7.3e-13 Score=97.96 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 677799999999972983899999977999999997414889998999999998289999952472
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~ 176 (205)
-..+|.+||.+|+.+||||.+||+.+|++++++++||+|+..|++..+.+||++|||++++||..+
T Consensus 9 ~~~i~~~lk~~R~~~glsq~~lA~~~gis~~~i~~~E~G~~~ps~~~l~~la~~l~i~~~~l~~~~ 74 (82)
T 3clc_A 9 LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEML 74 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCCCBHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 999999999999983999999957039988799999859989999999999999798899997706
No 62
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=99.40 E-value=2.3e-13 Score=101.03 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 999999999999999859988999998489999999887799888999999999982899999
Q gi|254781218|r 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 (205)
Q Consensus 27 ~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~ 89 (205)
..++.||.+||.+|+.+||||++||+.+|+++++||+||+|...|+++.+..||++|++++..
T Consensus 6 ~~~~~l~~~lk~~R~~~gltq~elA~~~gvs~~~is~~E~G~~~~s~~~l~~i~~~lg~~~~~ 68 (84)
T 2ef8_A 6 HRYRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGL 68 (84)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999949999999999747999999998799999999999999994898585
No 63
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=99.39 E-value=1.5e-13 Score=102.26 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 45546777999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 107 ~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
...++..+|.+||.+|+.+||||.+||+.+|+++++|++||+|...|+++.+.+||.+|||++++++..+.
T Consensus 6 ~i~~~~~lg~~lr~~R~~~glsq~~lA~~~gvs~~~is~~E~g~~~ps~~~l~~ia~~lgv~~~~~~~~~~ 76 (88)
T 2wiu_B 6 KIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNA 76 (88)
T ss_dssp CBCSHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC----
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 33899999999999999859999999786399899999998799999999999999996994086457999
No 64
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=99.38 E-value=2.1e-13 Score=101.30 Aligned_cols=75 Identities=15% Similarity=0.068 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 156689999999999999999859988999998489999999887799888999999999982899999614532
Q gi|254781218|r 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 21 ~~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
++++.++..+.++.-++..|+++||||++||+++|+++++||+||+|.+.|+++.|.+||++|+|+++||+.|..
T Consensus 7 ~~~~~~~~~~rLk~l~~~~r~e~Glsq~elA~~~Gis~~tis~~e~G~~~~~~~~l~~ia~~l~v~~~~l~~~~~ 81 (236)
T 3bdn_A 7 LTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIA 81 (236)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSCGGGTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEHHCCCCC
T ss_conf 999999999999999999999839999999999797999998887285246799999752202785121103223
No 65
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=99.37 E-value=1.1e-12 Score=96.75 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
Q ss_conf 1345546777999999999729838999999779999999974148899989999999982899999524
Q gi|254781218|r 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 (205)
Q Consensus 105 ~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~ 174 (205)
.....+...++..++..|+.+||||.+||+.+|+++++|++||+|.+.|+++.+.+||++|||++++|+-
T Consensus 4 ~e~~~~~~~l~~~~~~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~~~~ 73 (80)
T 3kz3_A 4 QEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSP 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCH
T ss_conf 8999999999999999999939999999662098898899998799789999999999998988999874
No 66
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=99.37 E-value=1.3e-12 Score=96.39 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
Q ss_conf 321345546777999999999729838999999779999999974148899989999999982899999524
Q gi|254781218|r 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 (205)
Q Consensus 103 ~~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~ 174 (205)
+.+....+...+|+.|+++|+..||||.+||+.+|++++++++||+|.+.|+++.+.+||++|||++++|+.
T Consensus 7 ~~~~~~~~~~~l~~~l~~~R~~~glTQ~~lA~~lgis~~~is~~E~G~~~~s~~~l~~la~~l~v~~~~l~~ 78 (92)
T 1lmb_3 7 LTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP 78 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 998999999999999999999929999999998847898999997799899999999999998987999976
No 67
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=99.36 E-value=1.4e-12 Score=96.12 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 99999999999985998899999848999999988779988899999999998289999961453
Q gi|254781218|r 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 (205)
Q Consensus 30 ~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge 94 (205)
.+||++||.+|+.+||||+++|.. ++|++++|+||+|...||++.|..|++.++|++++++...
T Consensus 2 ~~iG~~~k~~R~~~~ltq~~~a~~-~~s~s~ls~~E~g~~~~s~~~l~~l~~~l~v~~~ef~~~~ 65 (317)
T 2awi_A 2 FKIGSVLKQIRQELNYHQIDLYSG-IMSKSVYIKVEADSRPISVEELSKFSERLGVNFFEILNRA 65 (317)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHTT-TSCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHC-CCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 688999999999879989999662-8999999999889987999999999998599999998553
No 68
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=99.35 E-value=1.1e-12 Score=96.96 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 777999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 112 ~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
..||++||.+|+.+||||.+||+.+|+++++|++||+|++.|+++.+.+||++|||++.+...|..
T Consensus 12 ~~ig~~ik~~R~~~glsq~elA~~~gvs~~~is~~E~G~~~p~~~~l~kia~~L~v~L~~~~~~~~ 77 (91)
T 1x57_A 12 LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKP 77 (91)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSSTTTTCB
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999999819989999987198999999998799889999999999994998645557897
No 69
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=99.33 E-value=4.3e-12 Score=93.20 Aligned_cols=58 Identities=16% Similarity=0.005 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9999999999999985998899999848999999988779988899999999998289
Q gi|254781218|r 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 (205)
Q Consensus 28 ~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~v 85 (205)
....+|++||.+|+.+||||++||+.+|+++++||+||+|.+.|+++.+.+||++|++
T Consensus 11 ~~~~lg~~lk~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~~~~~~l~~i~~aL~~ 68 (86)
T 3eus_A 11 EHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEG 68 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 9999999999999984999999999979699999999889999999999999999089
No 70
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=99.32 E-value=1.7e-12 Score=95.74 Aligned_cols=69 Identities=9% Similarity=-0.032 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHHC
Q ss_conf 689999999999999999859988999998489999999887799-888999999999982899999614
Q gi|254781218|r 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDWIYD 92 (205)
Q Consensus 24 ~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~-~~psi~~l~~la~~~~vs~d~Ll~ 92 (205)
+..+...++|.+|+.+|+.+||||.+||+.+|+++++||+||||. ..|+++.|.++|++|+++++..+.
T Consensus 11 ~~M~lr~~L~~~Ir~~R~~~glTQ~elA~~~gvs~~~is~iE~G~~~~~s~~~L~~ia~aLg~~v~i~~~ 80 (83)
T 2a6c_A 11 HHMKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINIK 80 (83)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 6269999999999999999599999999998778999999987999998999999999992996388723
No 71
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646}
Probab=99.30 E-value=8.4e-13 Score=97.56 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 99999999999985998899999848999999988779988899999999998289999961453
Q gi|254781218|r 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 (205)
Q Consensus 30 ~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge 94 (205)
+.||+.||.+|+.+||||++||+.+ +|++++|+||||...||++.+..|++.++|++++++...
T Consensus 4 ~~iG~~lk~~R~~~~ltq~~la~~i-~S~s~lSkiE~g~~~ps~~~l~~l~~~l~i~~~~~~~~~ 67 (293)
T 2qfc_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVL 67 (293)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCC-CCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 8999999999998799999985215-899999999889999999999999988599789987777
No 72
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=99.29 E-value=1.5e-11 Score=89.86 Aligned_cols=66 Identities=24% Similarity=0.245 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 46777999999999729838999999779999999974148-899989999999982899999524721
Q gi|254781218|r 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 110 d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~-~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
....+|.+||.+|+ |++|.|||+.+|+++++|++||+|+ ..|+++.+.+||++||+++|+|+.+-.
T Consensus 13 ~~~~lG~~lr~~R~--~~s~~elA~~~gis~~~is~iE~G~~~~~s~~~l~~ia~~L~v~~~~Ll~~~~ 79 (86)
T 2ofy_A 13 RGQRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVT 79 (86)
T ss_dssp HHHHHHHHHHHHHT--TSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCC
T ss_conf 99999999999998--78999999997979999999986997887599999999998978999962446
No 73
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=99.28 E-value=1.3e-12 Score=96.38 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHHHHHH----HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 779999999----997298389999997799999999741488999899999999828999995247210
Q gi|254781218|r 113 AIGARLKSI----RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 (205)
Q Consensus 113 ~iG~rLk~l----R~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~ 178 (205)
..++|||.+ |+++||||.+||+.+|++++++++||+|.+.|+.+.+.+||++|+|+++||+.|...
T Consensus 13 ~~~~rLk~l~~~~r~e~Glsq~elA~~~Gis~~tis~~e~G~~~~~~~~l~~ia~~l~v~~~~l~~~~~~ 82 (236)
T 3bdn_A 13 EDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAR 82 (236)
T ss_dssp HHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSCGGGTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEHHCCCCCC
T ss_conf 9999999999999998399999999997979999988872852467999997522027851211032232
No 74
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=99.26 E-value=1.3e-11 Score=90.30 Aligned_cols=64 Identities=20% Similarity=0.134 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 77999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 113 ~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
.+|+++|.+|+.+|+||+++|+. ++|++++|+||+|.+.|+.+.+..|++.+||++++|++...
T Consensus 3 ~iG~~~k~~R~~~~ltq~~~a~~-~~s~s~ls~~E~g~~~~s~~~l~~l~~~l~v~~~ef~~~~~ 66 (317)
T 2awi_A 3 KIGSVLKQIRQELNYHQIDLYSG-IMSKSVYIKVEADSRPISVEELSKFSERLGVNFFEILNRAG 66 (317)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHTT-TSCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHC-CCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 88999999999879989999662-89999999998899879999999999985999999985538
No 75
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=99.25 E-value=4.6e-12 Score=93.01 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 77799999999972983899999977999999997414889998999999998289999952
Q gi|254781218|r 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 (205)
Q Consensus 112 ~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~ 173 (205)
..+|.+|+++|+.+||||.+||+.+|++++++++||+|...|++..+.+||++||++++.++
T Consensus 9 ~~l~~~lk~~R~~~gltq~elA~~~gvs~~~is~~E~G~~~~s~~~l~~i~~~lg~~~~~~~ 70 (84)
T 2ef8_A 9 RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPM 70 (84)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCH
T ss_conf 99999999999994999999999974799999999879999999999999999489858539
No 76
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=99.23 E-value=1.4e-11 Score=90.07 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH------HHHHHHHHHCCCHHHHHCC
Q ss_conf 89999999999999999859988999998489999999887799888999------9999999828999996145
Q gi|254781218|r 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR------YALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 25 ~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~------~l~~la~~~~vs~d~Ll~g 93 (205)
|.+-+++||++||..|+.+||||++||++++|+.++|++||+|...+... +|.++|++|+|++++|+..
T Consensus 1 mse~~~~iG~~Lr~~R~~~glS~~elA~~l~Is~~~l~~iE~g~~~~~~~~~~~~g~lr~ya~~Lgld~~~l~~~ 75 (112)
T 2wus_R 1 MSEKWKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLKL 75 (112)
T ss_dssp -CHHHHHHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 960799999999999999699999999998568999999887895337652289999999999969799999999
No 77
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=99.23 E-value=6.9e-12 Score=91.91 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 79999999997298389999997799999999741488999899999999828999995
Q gi|254781218|r 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 (205)
Q Consensus 114 iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L 172 (205)
.|++|+++|+.+||||.+||+.+|++++++++||+|++.|+.. +.+|+++|+++++||
T Consensus 12 ~p~~ik~~R~~~gltQ~elA~~lgvs~~ti~~~E~G~~~P~~~-~~~l~~~l~~~P~~l 69 (73)
T 3fmy_A 12 APEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPS-TIKLLRVLDKHPELL 69 (73)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHH-HHHHHHHHHHCGGGH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH-HHHHHHHHCCCHHHH
T ss_conf 9999999999859999999999897999999999799799999-999999987791888
No 78
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=99.19 E-value=3.2e-11 Score=87.83 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCC-CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 999999998599-88999998489999999887799888999999999982899999614532
Q gi|254781218|r 34 TRIKDIRKANNK-TQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 34 ~rik~lR~~~gl-tQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
+.|+.+|+..|+ ||.+||+.+|+++++|++||+|...|+ +.+.+||+.|+|+++||+.|+.
T Consensus 9 e~l~Rl~~~~g~~sq~eLA~~lGvs~stis~~e~~~~~p~-~~l~~ia~~~gv~~~~l~~~~~ 70 (189)
T 2fjr_A 9 DVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISY-DFAAHCALETGANLQWLLTGEG 70 (189)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSSCCH-HHHHHHHHHHCCCHHHHHHCCS
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCH-HHHHHHHHHHCCCHHHHCCCCC
T ss_conf 9999999982998799999997979999999982899977-8999999880998345116654
No 79
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=99.19 E-value=5.3e-11 Score=86.43 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 4677799999999972983899999977999999997414889998999999998289
Q gi|254781218|r 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 (205)
Q Consensus 110 d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgv 167 (205)
....+|++||.+|+.+||||.+||+.+|+++++|++||+|.+.|++..+.+||++|++
T Consensus 11 ~~~~lg~~lk~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~~~~~~l~~i~~aL~~ 68 (86)
T 3eus_A 11 EHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEG 68 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 9999999999999984999999999979699999999889999999999999999089
No 80
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=99.18 E-value=1.3e-11 Score=90.24 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 999999999985998899999848999999988779988899999999998289999961
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll 91 (205)
.|++||.+|+.+||||++||+.+||++++|++||+|.+.|+.. +.+|+..|++++++|.
T Consensus 12 ~p~~ik~~R~~~gltQ~elA~~lgvs~~ti~~~E~G~~~P~~~-~~~l~~~l~~~P~~l~ 70 (73)
T 3fmy_A 12 APEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPS-TIKLLRVLDKHPELLN 70 (73)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHH-HHHHHHHHHHCGGGHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH-HHHHHHHHCCCHHHHH
T ss_conf 9999999999859999999999897999999999799799999-9999999877918888
No 81
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646}
Probab=99.17 E-value=8.5e-12 Score=91.37 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 6777999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
...||..||.+|+.+||||.+||+-+ +|++++|+||+|++.|+.+.+..|++.+|+++++|+....
T Consensus 3 ~~~iG~~lk~~R~~~~ltq~~la~~i-~S~s~lSkiE~g~~~ps~~~l~~l~~~l~i~~~~~~~~~~ 68 (293)
T 2qfc_A 3 AEKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLI 68 (293)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHCC-CCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 68999999999998799999985215-8999999998899999999999999885997899877775
No 82
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=99.15 E-value=4e-11 Score=87.22 Aligned_cols=63 Identities=13% Similarity=0.225 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 6777999999999729838999999779999999974148-89998999999998289999952
Q gi|254781218|r 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWIY 173 (205)
Q Consensus 111 ~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~-~~Ps~~~l~kIa~~lgvs~d~L~ 173 (205)
...+|.+|+.+|+.+||||.+||+.+|++++++++||+|+ ..|+++.+.+||.+||++++..+
T Consensus 16 r~~L~~~Ir~~R~~~glTQ~elA~~~gvs~~~is~iE~G~~~~~s~~~L~~ia~aLg~~v~i~~ 79 (83)
T 2a6c_A 16 RSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINI 79 (83)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999999959999999999877899999998799999899999999999299638872
No 83
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=99.14 E-value=7.1e-11 Score=85.65 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=58.2
Q ss_pred HHHHHHHHHCCC-CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 999999997298-38999999779999999974148899989999999982899999524721025
Q gi|254781218|r 116 ARLKSIRKDKGM-SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 (205)
Q Consensus 116 ~rLk~lR~~~gl-sq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~~~ 180 (205)
++|+++++.+|+ ||.+||+.+|++++++++||+|++.|+ +.+.+||+++|++++||++|++...
T Consensus 9 e~l~Rl~~~~g~~sq~eLA~~lGvs~stis~~e~~~~~p~-~~l~~ia~~~gv~~~~l~~~~~~~~ 73 (189)
T 2fjr_A 9 DVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISY-DFAAHCALETGANLQWLLTGEGEAF 73 (189)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSSCCH-HHHHHHHHHHCCCHHHHHHCCSCSC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCH-HHHHHHHHHHCCCHHHHCCCCCCCC
T ss_conf 9999999982998799999997979999999982899977-8999999880998345116654557
No 84
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A
Probab=99.13 E-value=3.2e-10 Score=81.65 Aligned_cols=145 Identities=10% Similarity=0.015 Sum_probs=112.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHHHHHCCCHHHHHCC-CCC-CCCCC---------
Q ss_conf 9999999985998899999848999999988779988-89999999999828999996145-322-10000---------
Q gi|254781218|r 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWIYDG-EVI-DRRYE--------- 101 (205)
Q Consensus 34 ~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~-psi~~l~~la~~~~vs~d~Ll~g-e~~-~~~~~--------- 101 (205)
-+++.+-..+.-|-+++|..++++..-+.++-+|... ++...+..+++.+.|+...|+-. +.. +..+.
T Consensus 6 ~k~~~~lN~~K~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (443)
T 3g7d_A 6 FKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEANEPDPAAATALAEALSVEPSQLAADAHRNLTVVHKSAEEMHASR 85 (443)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHC--------CHHHHHHHHHTTCCGGGTBCCSCCSCCEEEECHHHHHHTC
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHEEEECCCCCCEEEEEHHHHHHHC
T ss_conf 89999988750699999988576688999875488655568999988764677777857515898745997555634322
Q ss_pred -----------------------------CCCCH-------------------------------------HH---H---
Q ss_conf -----------------------------23213-------------------------------------45---5---
Q gi|254781218|r 102 -----------------------------DVTNK-------------------------------------KR---L--- 109 (205)
Q Consensus 102 -----------------------------~~~~~-------------------------------------~~---~--- 109 (205)
..+++ .+ +
T Consensus 86 r~~~r~~~~~y~y~~~~~~~~~~~p~~~~~~~p~~~~~~~n~gh~~~~~t~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~ 165 (443)
T 3g7d_A 86 RPIQRDGIHFYNYYTLAAPEGRVAPVVLDILCPSDRLPALNNGHLEPAITVNLGPGDINGRWGEEITPQTWRVLHANHGG 165 (443)
T ss_dssp EEEEETTEEEEEEEECCCCTTSCCCEEEEECSCTTSCCCCCCCCSSCEEEEEEEESCEEEECSSSCCTTTEEEECBCCSS
T ss_pred CHHHCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCEEEEEEECCCC
T ss_conf 51321896523566135766765637888658899875364774110268985672024310333476505899714777
Q ss_pred ------HH-------------------------------------------------------HHHHHHHHHHHHHCCCC
Q ss_conf ------46-------------------------------------------------------77799999999972983
Q gi|254781218|r 110 ------DP-------------------------------------------------------YAIGARLKSIRKDKGMS 128 (205)
Q Consensus 110 ------d~-------------------------------------------------------~~iG~rLk~lR~~~gls 128 (205)
|. ..-+.-|++.|+.+|||
T Consensus 166 ~~~~~gd~~~~~~y~~hs~~~~~~~~~~il~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~slLk~~rk~RGLT 245 (443)
T 3g7d_A 166 DRWITGDSYVEPSYCPHSYSLAGDAPARIVSYTAQSNISPLMTEANNWSTGAFEEALKALSGKVSAGSVLDLFLARRAHT 245 (443)
T ss_dssp CTTSCBCEEEECTTCCCEEEESSSSCEEEEEEECCCTTHHHHHHHTTSCHHHHHHHHHHHSSCCCHHHHHHHHHHHTTCC
T ss_pred CCEEECCCEECCCCCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 75131561433786772552137898469999806716788998763166789998775404620689999999971888
Q ss_pred HHHHHHHHCCCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 89999997799999999741-488999899999999828999995247210
Q gi|254781218|r 129 QIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 (205)
Q Consensus 129 q~elA~~lgis~~tis~~E~-g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~ 178 (205)
+.+||+.+|++.+++|++|+ |...|++.+|.+||++|+|++.+||..+..
T Consensus 246 L~eLAkrTGIS~S~LSqIERngks~PSl~tL~KIA~AL~V~lsdLf~~~~~ 296 (443)
T 3g7d_A 246 RTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRVLLPADDQ 296 (443)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCGGGGSCCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf 999998869899999999856888988999999999729999997488776
No 85
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=99.13 E-value=8.8e-11 Score=85.09 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=49.2
Q ss_pred HHHHHH-HHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 999999-999985998899999848999999988779988899999999998289999961453
Q gi|254781218|r 32 VGTRIK-DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 (205)
Q Consensus 32 iG~rik-~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge 94 (205)
.|+-|+ ++++.+||||.+||+.+||++++||.|++|++.|+.+++++|+++|++|.+++++.+
T Consensus 11 PGeiL~~e~L~~~gisq~~LA~~lgvs~~~is~i~~Gk~~it~~~a~rL~~~fg~s~~~wl~lQ 74 (113)
T 2eby_A 11 PGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQ 74 (113)
T ss_dssp HHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 2199999988766999999999969899999999938778999999999999895899999879
No 86
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=99.07 E-value=1.5e-10 Score=83.57 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 799999999972983899999977999999997414889998999999998289999952
Q gi|254781218|r 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 (205)
Q Consensus 114 iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~ 173 (205)
.+.+||.+|+.+||||.+||+.+|+++++|++||+|+..|+...+..| .++...+++++
T Consensus 31 ~~~~ik~~R~~~gltq~~lA~~lgvs~~ti~~~E~G~~~P~~~~~~ll-~~i~~~Pe~~~ 89 (99)
T 2ppx_A 31 RMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYL-KIIAVDPEGTA 89 (99)
T ss_dssp -CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHH-HHHHHCHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH-HHHHCCHHHHH
T ss_conf 589999999995999999999969889999999889986999999999-99874979999
No 87
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=99.02 E-value=5.6e-10 Score=80.10 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=60.3
Q ss_pred HHHHHHHHH-HHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 677799999-999972983899999977999999997414889998999999998289999952472
Q gi|254781218|r 111 PYAIGARLK-SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 (205)
Q Consensus 111 ~~~iG~rLk-~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~ 176 (205)
|.-.|+.|+ ++++.+||||.+||+.+|+++++++.|++|++.|+.+.+.+|+++||+|++|++...
T Consensus 8 P~hPGeiL~~e~L~~~gisq~~LA~~lgvs~~~is~i~~Gk~~it~~~a~rL~~~fg~s~~~wl~lQ 74 (113)
T 2eby_A 8 PTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQ 74 (113)
T ss_dssp CCCHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9582199999988766999999999969899999999938778999999999999895899999879
No 88
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A
Probab=99.01 E-value=3.7e-10 Score=81.22 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=60.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 999999999859988999998489999999887-7998889999999999828999996145322
Q gi|254781218|r 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFE-NGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 (205)
Q Consensus 33 G~rik~lR~~~gltQ~elA~~~gis~~~is~~E-~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~ 96 (205)
+.-||..|+++|||+++||++.|+|.+++|++| +|...|++..|.+||++|+|++.+||..+..
T Consensus 232 ~slLk~~rk~RGLTL~eLAkrTGIS~S~LSqIERngks~PSl~tL~KIA~AL~V~lsdLf~~~~~ 296 (443)
T 3g7d_A 232 GSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRVLLPADDQ 296 (443)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCGGGGSCCCCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf 89999999971888999998869899999999856888988999999999729999997488776
No 89
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=99.01 E-value=3.2e-10 Score=81.59 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH------HHHHHHHHHCCCHHHHHCC
Q ss_conf 777999999999729838999999779999999974148899989------9999999828999995247
Q gi|254781218|r 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK------PARKIKQVTKKHLDWIYFG 175 (205)
Q Consensus 112 ~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~------~l~kIa~~lgvs~d~L~~G 175 (205)
..||.+||++|+.+|||+.|+|+.+||+..++++||+|...+... .+.++|++||++++.|+..
T Consensus 6 ~~iG~~Lr~~R~~~glS~~elA~~l~Is~~~l~~iE~g~~~~~~~~~~~~g~lr~ya~~Lgld~~~l~~~ 75 (112)
T 2wus_R 6 KELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLKL 75 (112)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999999699999999998568999999887895337652289999999999969799999999
No 90
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B*
Probab=98.98 E-value=3.3e-10 Score=81.53 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=33.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 9999999997298389999997799999999741488999899999999828999995
Q gi|254781218|r 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 (205)
Q Consensus 115 G~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L 172 (205)
++.||.+|+.+||||.+||+.+|++.+++++||+|+..|+... .++.++++.++++|
T Consensus 73 ~e~ir~~R~~~glsQ~elA~~lg~~~~ti~~~E~G~~~p~~~~-~~l~~~l~~~p~~l 129 (133)
T 3o9x_A 73 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPST-IKLLRVLDKHPELL 129 (133)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHTSSCCCHHH-HHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH-HHHHHHHCCCCHHH
T ss_conf 9999999998499999999995999999999986998899999-99999984385478
No 91
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=98.98 E-value=5.6e-10 Score=80.13 Aligned_cols=63 Identities=17% Similarity=0.036 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
Q ss_conf 9999999999999859988999998489999999887799888999999999982899999614
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ 92 (205)
....+.+||.+|+..||||++||..+||++++|++||+|...|+...+ .+...+...+++++.
T Consensus 28 ~~~~~~~ik~~R~~~gltq~~lA~~lgvs~~ti~~~E~G~~~P~~~~~-~ll~~i~~~Pe~~~~ 90 (99)
T 2ppx_A 28 SAPRMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPAR-AYLKIIAVDPEGTAA 90 (99)
T ss_dssp ----CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHH-HHHHHHHHCHHHHHH
T ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH-HHHHHHHCCHHHHHH
T ss_conf 156589999999995999999999969889999999889986999999-999998749799999
No 92
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=98.94 E-value=1.8e-09 Score=76.95 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 6689999999999999999859988999998489999999887799-88899999999998289999961
Q gi|254781218|r 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDWIY 91 (205)
Q Consensus 23 ~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~-~~psi~~l~~la~~~~vs~d~Ll 91 (205)
+|..+..-.++.+|..+|+.+||||.++|+.+|++++.||++|+|+ ..+|++.|++++..++..++--+
T Consensus 32 aeel~~K~~L~~~I~~~i~~~glTQ~eaA~~lGisq~~iS~l~~Gk~~~~Sld~L~~~~~~LG~~v~i~i 101 (120)
T 2o38_A 32 AEERQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVI 101 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 8999999999999999999869967556555088889989997588678889999999998599389999
No 93
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B*
Probab=98.91 E-value=9.4e-10 Score=78.73 Aligned_cols=57 Identities=19% Similarity=0.087 Sum_probs=49.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 9999999998599889999984899999998877998889999999999828999996
Q gi|254781218|r 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 (205)
Q Consensus 33 G~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~L 90 (205)
+++||.+|+.+||||++||+.+|+++++|++||+|...|+... .+|...++..+++|
T Consensus 73 ~e~ir~~R~~~glsQ~elA~~lg~~~~ti~~~E~G~~~p~~~~-~~l~~~l~~~p~~l 129 (133)
T 3o9x_A 73 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPST-IKLLRVLDKHPELL 129 (133)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHTSSCCCHHH-HHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH-HHHHHHHCCCCHHH
T ss_conf 9999999998499999999995999999999986998899999-99999984385478
No 94
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=98.86 E-value=2.3e-09 Score=76.35 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CC----HHHHHHHHHHHCCCHHHHHCC
Q ss_conf 99999999999985998899999848999999988779988--89----999999999828999996145
Q gi|254781218|r 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS--TS----IRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 30 ~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~--ps----i~~l~~la~~~~vs~d~Ll~g 93 (205)
+.||++||..|+++|+||+++|++++|+.++|.++|+|... |+ ..++..+|++++++.++++..
T Consensus 2 ~tiG~~Lr~~R~~~glSi~eva~~l~I~~~~l~aiE~g~~~~lp~~~~~~g~lr~ya~~L~ld~~~ll~~ 71 (130)
T 3fym_A 2 KTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQA 71 (130)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 5799999999999699999999997514999999984885456770899999999999939599999999
No 95
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=98.82 E-value=5.2e-09 Score=74.12 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
Q ss_conf 999999997298389999997799999999741488999899
Q gi|254781218|r 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 (205)
Q Consensus 116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~ 157 (205)
++|+.+|+..||||.+||+.+|++++++++||+|++.|+...
T Consensus 93 e~i~~~R~~~glsQ~~lA~~lGvs~~ti~~~E~G~r~ip~~i 134 (170)
T 2auw_A 93 EMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTI 134 (170)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 999999998699999999995999999999977999999899
No 96
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=98.72 E-value=8.6e-09 Score=72.80 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC--CCCH----HHHHHHHHHHCCCHHHHHCC
Q ss_conf 779999999997298389999997799999999741488--9998----99999999828999995247
Q gi|254781218|r 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT--IPEI----KPARKIKQVTKKHLDWIYFG 175 (205)
Q Consensus 113 ~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~--~Ps~----~~l~kIa~~lgvs~d~L~~G 175 (205)
.+|++||+.|+.+|+|+.|+|+.++|+.+++.++|+|.. .|+. ..+..+|+.||++.+.++..
T Consensus 3 tiG~~Lr~~R~~~glSi~eva~~l~I~~~~l~aiE~g~~~~lp~~~~~~g~lr~ya~~L~ld~~~ll~~ 71 (130)
T 3fym_A 3 TVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQA 71 (130)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 799999999999699999999997514999999984885456770899999999999939599999999
No 97
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=98.55 E-value=9.8e-08 Score=66.26 Aligned_cols=65 Identities=9% Similarity=0.110 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHHC
Q ss_conf 46777999999999729838999999779999999974148-899989999999982899999524
Q gi|254781218|r 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWIYF 174 (205)
Q Consensus 110 d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~-~~Ps~~~l~kIa~~lgvs~d~L~~ 174 (205)
....++.+|.++|+.+||||.++|+.+|++++.+|++|+|+ ..|+++.|.+++.+||..++.-+.
T Consensus 37 ~K~~L~~~I~~~i~~~glTQ~eaA~~lGisq~~iS~l~~Gk~~~~Sld~L~~~~~~LG~~v~i~i~ 102 (120)
T 2o38_A 37 TKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIR 102 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 999999999999998699675565550888899899975886788899999999985993899995
No 98
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=98.52 E-value=1.3e-07 Score=65.60 Aligned_cols=49 Identities=12% Similarity=-0.039 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998599889999984899999998877998889999999999
Q gi|254781218|r 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 (205)
Q Consensus 33 G~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~ 81 (205)
.++|+.+|+..||||++||+++||++++|++||+|.+.++..+.+.+..
T Consensus 92 ~e~i~~~R~~~glsQ~~lA~~lGvs~~ti~~~E~G~r~ip~~i~La~lg 140 (170)
T 2auw_A 92 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTIWLACLG 140 (170)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9999999998699999999995999999999977999999899999976
No 99
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=98.38 E-value=4e-06 Score=56.32 Aligned_cols=104 Identities=16% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCH
Q ss_conf 99999999999999985998899999848999999988779988899999999998289999961453221000023213
Q gi|254781218|r 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 (205)
Q Consensus 27 ~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~ 106 (205)
....++.++|...|..+|||++++|+.+|.|+..+...+.|++..+.+....+|..|+++-+.+..-...+.+.. ...-
T Consensus 9 ~~r~elte~Il~AK~~KGlTwe~IAe~vG~S~v~vaaa~lGQ~~l~~e~A~~l~~~LgL~~e~~~~l~~~P~rg~-~~~~ 87 (156)
T 1dw9_A 9 NIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGC-IDDR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHHHTTSBCCCCC-CSSS
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCC-CCCC
T ss_conf 378999999999999849999999999797999999998457779989999999854999999999747997688-8987
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 455467779999999997298389999
Q gi|254781218|r 107 KRLDPYAIGARLKSIRKDKGMSQIEFG 133 (205)
Q Consensus 107 ~~~d~~~iG~rLk~lR~~~glsq~elA 133 (205)
-..||. -.|+-++-...|-+.+++.
T Consensus 88 ~ptdP~--iYR~yE~v~vYG~~~K~~i 112 (156)
T 1dw9_A 88 IPTDPT--MYRFYEMLQVYGTTLKALV 112 (156)
T ss_dssp SCCSHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCH--HHHHHHHHHHCCHHHHHHH
T ss_conf 888835--7879999971278799999
No 100
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=97.86 E-value=6e-05 Score=49.06 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 467779999999997298389999997799999999741488999899999999828999995247
Q gi|254781218|r 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 (205)
Q Consensus 110 d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G 175 (205)
....+.++|...|..+|+|+.++|+.+|.|...+...+.|....+.+.+.+++++||.+-+.+..-
T Consensus 10 ~r~elte~Il~AK~~KGlTwe~IAe~vG~S~v~vaaa~lGQ~~l~~e~A~~l~~~LgL~~e~~~~l 75 (156)
T 1dw9_A 10 IRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLL 75 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 789999999999998499999999997979999999984577799899999998549999999997
No 101
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=96.68 E-value=0.0027 Score=38.85 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 999999999999999859988999998489999999887799
Q gi|254781218|r 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 (205)
Q Consensus 27 ~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~ 68 (205)
+...++|.+++.+ ...|+||+++|+++|+|+++||++=+-.
T Consensus 8 ~~~~E~g~~~~~l-~~~g~tQ~elAe~lg~Srs~Vsr~lrl~ 48 (192)
T 1zx4_A 8 HSIREIGLRLMRM-KNDGMSQKDIAAKEGLSQAKVTRALQAA 48 (192)
T ss_dssp SCHHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 8699999999999-9859999999999887999999999998
No 102
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1}
Probab=96.55 E-value=0.002 Score=39.58 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=29.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC--CCHHHHH
Q ss_conf 389999997799999999741488999899999999828--9999952
Q gi|254781218|r 128 SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK--KHLDWIY 173 (205)
Q Consensus 128 sq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lg--vs~d~L~ 173 (205)
+|..||+.+|++++++++|.+|+.. +.+....|.++.+ |+...|-
T Consensus 13 ~q~~lAr~lGVsq~aVs~W~~~~~v-P~~~~~~Ie~aT~g~Vt~~eLr 59 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGRV-PAERCIDIERVTNGAVICRELR 59 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTCC-CGGGHHHHHHHTTTSSCHHHHC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCC-CHHHHHHHHHHHCCCCCHHHHC
T ss_conf 9999999929999999999846999-9999999999978953199849
No 103
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1}
Probab=96.33 E-value=0.0048 Score=37.28 Aligned_cols=48 Identities=6% Similarity=0.021 Sum_probs=42.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC--CCHHHHHCC
Q ss_conf 9889999984899999998877998889999999999828--999996145
Q gi|254781218|r 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE--ISFDWIYDG 93 (205)
Q Consensus 45 ltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~--vs~d~Ll~g 93 (205)
=+|.+||.++||++++|++|-+| ...+.+....|+++-+ |+..+|-.+
T Consensus 12 G~q~~lAr~lGVsq~aVs~W~~~-~~vP~~~~~~Ie~aT~g~Vt~~eLrPD 61 (79)
T 3bd1_A 12 GSVSALAASLGVRQSAISNWRAR-GRVPAERCIDIERVTNGAVICRELRPD 61 (79)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHH-TCCCGGGHHHHHHHTTTSSCHHHHCTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHC-CCCCHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 89999999929999999999846-999999999999997895319984955
No 104
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=95.96 E-value=0.076 Score=29.86 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=57.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999859988999998489999999887799888999999999982899999614532210000232134554677
Q gi|254781218|r 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYA 113 (205)
Q Consensus 34 ~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~~ 113 (205)
.+|-.++ ..|+|+.++|..+|++.++|++|-+-... .+.. ..-..+...++..
T Consensus 13 ~~I~~l~-~~G~s~~~IAk~lg~s~stV~r~lk~~~~---------------------~~~~-----~~~gr~~~~~~~~ 65 (141)
T 1u78_A 13 AQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDPVS---------------------YGTS-----KRAPRRKALSVRD 65 (141)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSGGG---------------------TTCC-----CCCCCCCSSCHHH
T ss_pred HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHCC---------------------CCCC-----CCCCCCCCCCHHH
T ss_conf 9999999-97999999999989578999999997100---------------------1222-----2455666455699
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHC--CCHHHHHHHHCC
Q ss_conf 799999999972983899999977--999999997414
Q gi|254781218|r 114 IGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQG 149 (205)
Q Consensus 114 iG~rLk~lR~~~glsq~elA~~lg--is~~tis~~E~g 149 (205)
-..|..++....++..+++..++ +|..|+.++...
T Consensus 66 -~~~i~~~~~~~~~~~~~l~~~~~~~vS~~TV~r~L~~ 102 (141)
T 1u78_A 66 -ERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp -HHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred -HHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf -9999999834133089999987346049999999997
No 105
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=95.71 E-value=0.1 Score=29.06 Aligned_cols=128 Identities=11% Similarity=-0.037 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHH-HCCCHHHHHHHHCCC-----CCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC
Q ss_conf 999999999999859988999998-489999999887799-----88899999999998289999961453221000023
Q gi|254781218|r 30 KDVGTRIKDIRKANNKTQKEMAIG-ANQLESAVNLFENGM-----CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 (205)
Q Consensus 30 ~~iG~rik~lR~~~gltQ~elA~~-~gis~~~is~~E~G~-----~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~ 103 (205)
++|..+|+...+..+++|..||+. +|.+++++|.+-+.- ..+.-+.+.++.+-+..+.+.-+........
T Consensus 7 ~~ia~~Ik~~L~~~~I~Q~~fa~~vlg~SQ~tLS~lL~~pkpw~~l~~~re~~~Rm~~w~~~~~~~~~~~~~~~~~---- 82 (164)
T 2d5v_A 7 KEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAAC---- 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHSCHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC----
T ss_conf 9999999999988799789999998457888999987189985763737699999998851560257887630233----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 21345546777999999999729838999999779999999974148899989999999982899999
Q gi|254781218|r 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 (205)
Q Consensus 104 ~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~ 171 (205)
..........-+. +.-|...-+|..++.. +..+-.-...|+......||+.+|++..-
T Consensus 83 ~~~~~~~~~~~~~--~~~r~R~~~t~~q~~~--------L~~~f~~~~~P~~~~~~~la~~l~l~~~~ 140 (164)
T 2d5v_A 83 KRKEQEHGKDRGN--TPKKPRLVFTDVQRRT--------LHAIFKENKRPSKELQITISQQLGLELST 140 (164)
T ss_dssp -------------------CCCCCCHHHHHH--------HHHHHHHCSSCCHHHHHHHHHHHTCCHHH
T ss_pred CHHHHCCCCCCCC--CCCCCCEECCHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHCCCHHH
T ss_conf 1065407766778--8887711278999999--------99998727998999999999996929899
No 106
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=95.69 E-value=0.11 Score=29.00 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCC------CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 9999999999999859988999998489------9999998877998889999999999828999996145322100002
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQ------LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gi------s~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~ 102 (205)
.++++..++..|...|+||.+++..++. ++++++..|.-. .+......+...+. .|+-..+........
T Consensus 9 le~f~~~fk~rRi~l~~tQ~~v~~al~~~~~~~~sq~~~~~~e~~~--l~~k~~~~~~~~l~---~w~~~~~~~~~~~~~ 83 (160)
T 1e3o_C 9 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN--LSFKNMSKLKPLLE---KWLNDAEANLSSDSS 83 (160)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTC--SCHHHHHHHHHHHH---HHHHHHC--------
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCC--CCCCHHHHHHHHHH---HHHHHHHHHCCCCCC
T ss_conf 9999999999885037658699999983037877757772787533--46200577649999---998723421024335
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 32134554677799999999972983899999977999999997414889998999999998289999
Q gi|254781218|r 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 (205)
Q Consensus 103 ~~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d 170 (205)
.........-.....-+.-|....++..++.. +-.+-.-...|+......||..+|.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~rr~R~~~t~~q~~~--------Le~~f~~~~~p~~~~~~~lA~~l~l~~~ 143 (160)
T 1e3o_C 84 LSSPSALNSPGIEGLSRRRKKRTSIETNIRVA--------LEKSFMENQKPTSEDITLIAEQLNMEKE 143 (160)
T ss_dssp --------------------CCCCCCHHHHHH--------HHHHHHHCSSCCHHHHHHHHHHHTCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHCCCHH
T ss_conf 67888778877666677888988899999999--------9999981898799999999999694989
No 107
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=95.58 E-value=0.05 Score=30.98 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=47.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999972983899999977999999997414889998999999998289999952
Q gi|254781218|r 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 (205)
Q Consensus 116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~ 173 (205)
..|+.....+|+|..+++...|++.+|+.+- -..|-...-..||.+||+.+..|+
T Consensus 12 adI~AaL~krG~sLa~lsr~~Gls~~tl~na---l~rp~pkgEriIA~aLGv~P~eIW 66 (74)
T 1neq_A 12 ADVIAGLKKRKLSLSALSRQFGYAPTTLANA---LERHWPKGEQIIANALETKPEVIW 66 (74)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHSSCHHHHHHT---TTSSCHHHHHHHHHHTTSCHHHHC
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH---HCCCCCHHHHHHHHHHCCCHHHHC
T ss_conf 9999999996896999999909988999998---827780799999999785988949
No 108
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=95.58 E-value=0.044 Score=31.34 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 99999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
+...+|--|....+|.+.+|+.+|+|++.+-++|.....|-+-..+..-+.-+|++..||+.
T Consensus 3 lsnelkverirlsltaksvaeemgisrqqlcnieqsetapvvvkyiaflrskgvdlnalfdr 64 (77)
T 2k9q_A 3 LSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDR 64 (77)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCEEEEEEEEEEHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 54201235667752267789984845988347411365773488899998638758999999
No 109
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=95.49 E-value=0.014 Score=34.47 Aligned_cols=45 Identities=29% Similarity=0.389 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCC
Q ss_conf 5467779999999997298389999997799999999741488999
Q gi|254781218|r 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 (205)
Q Consensus 109 ~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps 154 (205)
+.-..+|.+.+. +.+.|+||.++|+.+|+|+++++++.+--..|.
T Consensus 8 ~~~~E~g~~~~~-l~~~g~tQ~elAe~lg~Srs~Vsr~lrl~~LP~ 52 (192)
T 1zx4_A 8 HSIREIGLRLMR-MKNDGMSQKDIAAKEGLSQAKVTRALQAASAPE 52 (192)
T ss_dssp SCHHHHHHHHHH-HHHTTCCHHHHHHHHTCCHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCH
T ss_conf 869999999999-998599999999998879999999999986999
No 110
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=95.42 E-value=0.084 Score=29.62 Aligned_cols=47 Identities=15% Similarity=-0.011 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
Q ss_conf 99999999999998599889999984899999998877998889999
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~ 75 (205)
...+...||..+...|++|..+|..+|+|+++||++++.....+...
T Consensus 29 p~~~a~eIk~~L~~~~i~q~~~~~~~g~SqSsiS~~L~~~~~~~~~k 75 (221)
T 2h8r_A 29 PWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQK 75 (221)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCHHHHC
T ss_conf 89999999999986698455530012444437889871898534402
No 111
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=95.40 E-value=0.052 Score=30.90 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
Q ss_conf 2134554677799999999972983899999977999999997414889998999
Q gi|254781218|r 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 (205)
Q Consensus 104 ~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l 158 (205)
......|+..+...|+..+...|++|..++..+|+++++++++++.....+...-
T Consensus 22 ~~~~~edp~~~a~eIk~~L~~~~i~q~~~~~~~g~SqSsiS~~L~~~~~~~~~k~ 76 (221)
T 2h8r_A 22 DRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKR 76 (221)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCHHHHCH
T ss_conf 8888558899999999999866984555300124444378898718985344023
No 112
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=94.60 E-value=0.12 Score=28.55 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHH-HCCCHHHHHHHHCCC-----CCCCHHHHHHHHHHHCCCHHH
Q ss_conf 546777999999999729838999999-779999999974148-----899989999999982899999
Q gi|254781218|r 109 LDPYAIGARLKSIRKDKGMSQIEFGKL-LGMPNSTLSNYEQGR-----TIPEIKPARKIKQVTKKHLDW 171 (205)
Q Consensus 109 ~d~~~iG~rLk~lR~~~glsq~elA~~-lgis~~tis~~E~g~-----~~Ps~~~l~kIa~~lgvs~d~ 171 (205)
+|...|..+|+..++..+++|..||+. +|.+++++|.+.+.- ..+.-....++..-+..+.+.
T Consensus 4 ldT~~ia~~Ik~~L~~~~I~Q~~fa~~vlg~SQ~tLS~lL~~pkpw~~l~~~re~~~Rm~~w~~~~~~~ 72 (164)
T 2d5v_A 4 INTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQ 72 (164)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHSCHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHH
T ss_conf 179999999999998879978999999845788899998718998576373769999999885156025
No 113
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=94.52 E-value=0.057 Score=30.64 Aligned_cols=46 Identities=13% Similarity=-0.002 Sum_probs=37.6
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH---HHHHHHHCC
Q ss_conf 9985998899999848999999988779988899999---999998289
Q gi|254781218|r 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA---LYLRNEYEI 85 (205)
Q Consensus 40 R~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l---~~la~~~~v 85 (205)
...+..|.+++|+.+|||.+|||+.=||....|-++- .++|+.++-
T Consensus 6 ~~~k~vTikdIA~~agVS~aTVSr~Ln~~~~vs~~tr~rV~~~a~~lgY 54 (344)
T 3kjx_A 6 DTKRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGY 54 (344)
T ss_dssp ----CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999976999999989599999999789899999999999999999599
No 114
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=94.34 E-value=0.21 Score=27.18 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999972983899999977999999997414889998999999998289999952
Q gi|254781218|r 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 (205)
Q Consensus 115 G~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~ 173 (205)
...|+--|....++.+.+|+..||+++.+.++|...+.|-+-.....-+--|++++-||
T Consensus 4 snelkverirlsltaksvaeemgisrqqlcnieqsetapvvvkyiaflrskgvdlnalf 62 (77)
T 2k9q_A 4 SNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALF 62 (77)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCEEEEEEEEEEHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 42012356677522677899848459883474113657734888999986387589999
No 115
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=94.34 E-value=0.061 Score=30.46 Aligned_cols=49 Identities=8% Similarity=0.050 Sum_probs=39.3
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH---HHHHCCCHH
Q ss_conf 9972983899999977999999997414889998999999---998289999
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI---KQVTKKHLD 170 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kI---a~~lgvs~d 170 (205)
...+..|.+|+|+.+|+|..|+|+..||....+-++-++| |+.+|..++
T Consensus 6 ~~~k~vTikdIA~~agVS~aTVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn 57 (344)
T 3kjx_A 6 DTKRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPN 57 (344)
T ss_dssp ----CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999976999999989599999999789899999999999999999599748
No 116
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=94.26 E-value=0.048 Score=31.09 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 999999999999-98599889999984899999998877
Q gi|254781218|r 29 WKDVGTRIKDIR-KANNKTQKEMAIGANQLESAVNLFEN 66 (205)
Q Consensus 29 ~~~iG~rik~lR-~~~gltQ~elA~~~gis~~~is~~E~ 66 (205)
.-+.|...+.+- ...+.||++||+++|+|+++||++=+
T Consensus 26 ~~E~a~~y~rlL~~~~~~tq~eLA~~lG~Srs~VS~~L~ 64 (189)
T 3mky_B 26 AYERGQRYASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp HHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999864388899999997979999999998
No 117
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=94.06 E-value=0.074 Score=29.96 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=13.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 83899999977999999997414889
Q gi|254781218|r 127 MSQIEFGKLLGMPNSTLSNYEQGRTI 152 (205)
Q Consensus 127 lsq~elA~~lgis~~tis~~E~g~~~ 152 (205)
+|..|+|+.+|+|..|+|+..||...
T Consensus 1 vTlkdIA~~aGVS~sTVSrvLng~~~ 26 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAK 26 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 97999999988599999999859998
No 118
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=93.69 E-value=0.17 Score=27.73 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=50.2
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHH-----HH--
Q ss_conf 85998899999848999999988779988899999999998289999961453221000023213455467-----77--
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPY-----AI-- 114 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~-----~i-- 114 (205)
.+.-|..++|+.+|++...+.....-...+....+-......+.+...+..... ...++.......+.. .+
T Consensus 113 ~~~pt~~e~a~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~e~~~~l~~~l~~L~~ 190 (239)
T 1rp3_A 113 GREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDYSELIPSST--NVEEEVIKRELTEKVKEAVSKLPE 190 (239)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGSC--HHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred CCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 479999999541499899999998720343212211122222204677652135--756565279999999998837999
Q ss_pred -HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf -9999999997298389999997799999999741
Q gi|254781218|r 115 -GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 115 -G~rLk~lR~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
-..|=.+|-..++|+.|+|+.+|+|+..+++++.
T Consensus 191 rer~Ii~~ry~~~~tl~eIA~~lgiS~~rVrqi~~ 225 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999926999999999998959999999999
No 119
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Shewanella oneidensis mr-1} SCOP: a.35.1.6
Probab=93.46 E-value=0.36 Score=25.70 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998599889999984899999998877998889999999999
Q gi|254781218|r 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 (205)
Q Consensus 33 G~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~ 81 (205)
+-.|+.+|...|||++++|+..+.|..-+-.||.|....+.-.-.+|.+
T Consensus 9 aiei~ylr~slglt~aqv~e~~k~se~dv~aweage~~~~~laqkklle 57 (166)
T 2ox6_A 9 AIEMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPELAQKKLLD 57 (166)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 5759999997078899988874457777553550688686077875510
No 120
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=93.44 E-value=0.16 Score=27.87 Aligned_cols=43 Identities=16% Similarity=-0.046 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH---HHHHHHCC
Q ss_conf 59988999998489999999887799888999999---99998289
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL---YLRNEYEI 85 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~---~la~~~~v 85 (205)
+..|.+++|+.+|||.+|||+.=||....|-++-- ..++.++-
T Consensus 1 m~vTi~dIA~~aGVS~~TVSr~Ln~~~~vs~~tr~kV~~~a~elgY 46 (332)
T 2hsg_A 1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGY 46 (332)
T ss_dssp -CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9767999999989799999999789599999999999999999689
No 121
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=93.40 E-value=0.1 Score=29.14 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=30.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCC---CCHH---HHHHHHHHHCC
Q ss_conf 98899999848999999988779988---8999---99999998289
Q gi|254781218|r 45 KTQKEMAIGANQLESAVNLFENGMCS---TSIR---YALYLRNEYEI 85 (205)
Q Consensus 45 ltQ~elA~~~gis~~~is~~E~G~~~---psi~---~l~~la~~~~v 85 (205)
+|.+++|+.+|+|.++||++=||... .+.+ .+...++.++-
T Consensus 1 vTlkdIA~~aGVS~sTVSrvLng~~~~~~Vs~~Tr~rV~~~a~~lgY 47 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNY 47 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 97999999988599999999859998787799999999999999888
No 122
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=93.40 E-value=0.13 Score=28.44 Aligned_cols=57 Identities=12% Similarity=0.245 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH-----HCCCCCCC--------HHHHHHHHHHHCCCHH
Q ss_conf 999999999985998899999848999999988-----77998889--------9999999998289999
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLF-----ENGMCSTS--------IRYALYLRNEYEISFD 88 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~-----E~G~~~ps--------i~~l~~la~~~~vs~d 88 (205)
+-.|+-.+--..|+||.|.|+++|+|+.+||++ |.|...++ .+.--.|.+.|++.--
T Consensus 9 ll~~vA~lYY~~g~tQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~~~~~~~~Le~~L~~~fgL~~~ 78 (315)
T 2w48_A 9 LIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGLKEA 78 (315)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf 9999999998249999999998795999999999999975937999948974419999999997299889
No 123
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=93.28 E-value=0.37 Score=25.60 Aligned_cols=57 Identities=7% Similarity=-0.041 Sum_probs=48.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 34 ~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
..|+..-..+|+|..+||...|++.+++.+. ...|....=..||++++|.+..|...
T Consensus 12 adI~AaL~krG~sLa~lsr~~Gls~~tl~na---l~rp~pkgEriIA~aLGv~P~eIWPs 68 (74)
T 1neq_A 12 ADVIAGLKKRKLSLSALSRQFGYAPTTLANA---LERHWPKGEQIIANALETKPEVIWPS 68 (74)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHSSCHHHHHHT---TTSSCHHHHHHHHHHTTSCHHHHCTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH---HCCCCCHHHHHHHHHHCCCHHHHCCC
T ss_conf 9999999996896999999909988999998---82778079999999978598894966
No 124
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=93.24 E-value=0.13 Score=28.40 Aligned_cols=37 Identities=19% Similarity=0.061 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHCCC--CHHHHHHHHCC-CHHHHHHH
Q ss_conf 999999999999998599--88999998489-99999988
Q gi|254781218|r 28 YWKDVGTRIKDIRKANNK--TQKEMAIGANQ-LESAVNLF 64 (205)
Q Consensus 28 ~~~~iG~rik~lR~~~gl--tQ~elA~~~gi-s~~~is~~ 64 (205)
-.++|=+.|+..++..|+ |+.|+|+++|+ |+++++++
T Consensus 7 kq~~il~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~ 46 (202)
T 1jhf_A 7 RQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH 46 (202)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf 9999999999999982989669999998499972899999
No 125
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=93.16 E-value=0.15 Score=27.97 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH---HHHHCCCH
Q ss_conf 983899999977999999997414889998999999---99828999
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI---KQVTKKHL 169 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kI---a~~lgvs~ 169 (205)
..|.+|+|+..|+|..|+|+..||+...+-++-.+| |+.+|..+
T Consensus 2 ~vTi~dIA~~aGVS~~TVSr~Ln~~~~vs~~tr~kV~~~a~elgY~p 48 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRP 48 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 76799999998979999999978959999999999999999968986
No 126
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=93.01 E-value=0.084 Score=29.60 Aligned_cols=47 Identities=15% Similarity=-0.069 Sum_probs=37.4
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH---HHHHHC
Q ss_conf 99998599889999984899999998877998889999999---999828
Q gi|254781218|r 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY---LRNEYE 84 (205)
Q Consensus 38 ~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~---la~~~~ 84 (205)
.-|+.+.-|.+++|+.+|||.+|||+.=||....+-++..+ +++.++
T Consensus 3 ~~~~~~~~Tl~diA~~agVS~~TVsraLn~~~~vs~~tr~rV~~~a~~lg 52 (366)
T 3h5t_A 3 LGRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMG 52 (366)
T ss_dssp ----CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999986399999998879999999968989999999999999999839
No 127
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=93.01 E-value=0.34 Score=25.86 Aligned_cols=48 Identities=19% Similarity=0.062 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHCCCCCCCH
Q ss_conf 55467779999999997298389999997-7999999997414889998
Q gi|254781218|r 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEI 155 (205)
Q Consensus 108 ~~d~~~iG~rLk~lR~~~glsq~elA~~l-gis~~tis~~E~g~~~Ps~ 155 (205)
..+...|..+|++..+.++++|.-||+.+ |.++.+++...+.+..|..
T Consensus 16 ~~~T~~ia~~i~~eL~~~~I~Q~~FAk~VL~rSQGtLSdLLr~~~~PkP 64 (101)
T 2csf_A 16 INITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSP 64 (101)
T ss_dssp CCCCTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCT
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 3339999999999999848659999999980171179999846479997
No 128
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=92.62 E-value=0.13 Score=28.50 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=28.9
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH---HHHHCC
Q ss_conf 9972983899999977999999997414889998999999---998289
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI---KQVTKK 167 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kI---a~~lgv 167 (205)
++.+.-|.+|+|+.+|+|..|+|+..||....+.++.++| ++.||.
T Consensus 5 ~~~~~~Tl~diA~~agVS~~TVsraLn~~~~vs~~tr~rV~~~a~~lgY 53 (366)
T 3h5t_A 5 RKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGY 53 (366)
T ss_dssp --CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999863999999988799999999689899999999999999998399
No 129
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=92.60 E-value=0.2 Score=27.28 Aligned_cols=43 Identities=21% Similarity=0.021 Sum_probs=35.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHH---HHHHHHHHCCCHH
Q ss_conf 889999984899999998877998889999---9999998289999
Q gi|254781218|r 46 TQKEMAIGANQLESAVNLFENGMCSTSIRY---ALYLRNEYEISFD 88 (205)
Q Consensus 46 tQ~elA~~~gis~~~is~~E~G~~~psi~~---l~~la~~~~vs~d 88 (205)
|-+++|+.+|||.+|||+.=||....|-++ ..++|+.++-.++
T Consensus 2 Ti~DIA~~aGVS~~TVSraLn~~~~vs~~tr~rV~~~a~elgY~pn 47 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPS 47 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 6899999989699999999679799999999999999999589889
No 130
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=92.54 E-value=0.12 Score=28.55 Aligned_cols=104 Identities=19% Similarity=0.149 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC--CC-CHHHHHHHHHHHHH
Q ss_conf 5998899999848999999988779988-89999999999828999996145322100002--32-13455467779999
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWIYDGEVIDRRYED--VT-NKKRLDPYAIGARL 118 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~-psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~--~~-~~~~~d~~~iG~rL 118 (205)
+.-+.+++|+.+|+++..+..+.+-... .|++..+.=......+....+..+........ +. --..+++ --..|
T Consensus 129 ~~p~~~~ia~~l~~~~~~v~~~~~~~~~~~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~L~~--~er~V 206 (243)
T 1l0o_C 129 RAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPITLLDQIADADEASWFDKIALKKAIEELDE--RERLI 206 (243)
T ss_dssp SCCBHHHHHHHHTSCHHHHHHHHHHHHC----------------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH--HHHHH
T ss_conf 9983889998939999999999999860466555545788623677764201003238889999999985999--99999
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 999997298389999997799999999741
Q gi|254781218|r 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 119 k~lR~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
=.+|-..|+|+.|+|+.+|+|++.++++++
T Consensus 207 i~l~y~~~~t~~EIA~~lgiS~~rV~qi~~ 236 (243)
T 1l0o_C 207 VYLRYYKDQTQSEVASRLGISQVQMSRLEK 236 (243)
T ss_dssp ------------------------------
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999806999899999998949999999999
No 131
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=92.48 E-value=0.19 Score=27.47 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHCCCCC
Q ss_conf 13455467779999999997298389999997-7999999997414889
Q gi|254781218|r 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTI 152 (205)
Q Consensus 105 ~~~~~d~~~iG~rLk~lR~~~glsq~elA~~l-gis~~tis~~E~g~~~ 152 (205)
....+|...|..+|++..+..+++|.-||+.+ |.++.+++.+.+.-.-
T Consensus 13 ~~~~ldT~~I~~~v~~eL~~~~I~Q~~Fa~~VL~rsQGtlSdLL~~PKP 61 (101)
T 1x2l_A 13 EEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKP 61 (101)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCC
T ss_conf 7663589999999999999949859999999981085889999838999
No 132
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=92.26 E-value=0.19 Score=27.39 Aligned_cols=46 Identities=26% Similarity=0.467 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHCCCCC
Q ss_conf 455467779999999997298389999997-7999999997414889
Q gi|254781218|r 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTI 152 (205)
Q Consensus 107 ~~~d~~~iG~rLk~lR~~~glsq~elA~~l-gis~~tis~~E~g~~~ 152 (205)
..+|...|..+|++..+.++++|.-||+.+ |.++.+++.+.+.-.-
T Consensus 25 ~eLDT~~Ia~~v~~~L~~~~IsQ~~Fak~VL~rSQGtlSdLL~~PKP 71 (111)
T 1wh8_A 25 PELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKP 71 (111)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCC
T ss_conf 53789999999999999858529999999980084789999838999
No 133
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=92.13 E-value=0.57 Score=24.47 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHC------CCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 999999999999985998899999848------99999998877998889999999999828999996145322100002
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGAN------QLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~g------is~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~ 102 (205)
.+.+...++..|...|+||.+++..+| .++.+|++.|.-.. +.....++.-. .-.||-.-+........
T Consensus 15 le~Fa~~~r~rri~lg~tq~~vg~al~~~~g~~~Sqtti~r~e~~~l--s~kn~~kl~p~---l~~~l~e~~~~~~~~~~ 89 (164)
T 2xsd_C 15 LEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL--SFKNMCKLKPL---LNKWLEETDSSSGSPTN 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCS--BHHHHHHHHHH---HHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHCCC--CHHHHHHCCHH---HHHHHHHHHHCCCCCCC
T ss_conf 99999999999987178733357775422577778765650432589--98888645278---89889988725368766
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 321345546777999999999729838999999779999999974148899989999999982899999
Q gi|254781218|r 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 (205)
Q Consensus 103 ~~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~ 171 (205)
. -.+...=+.-|....++..++.. +-.+-.-...|+......||+.+|++..-
T Consensus 90 ---~-----~~~~~~~k~rr~Rt~~t~~q~~~--------Le~~F~~~~~P~~~~~~~lA~~l~l~~~~ 142 (164)
T 2xsd_C 90 ---L-----DKIAAQGRKRKKRTSIEVGVKGA--------LESHFLKCPKPSAHEITGLADSLQLEKEV 142 (164)
T ss_dssp ------------------------CCHHHHHH--------HHHHHHHCSSCCHHHHHHHHHHHTCCHHH
T ss_pred ---C-----CCCCCCCCCCCCCCCCCHHHHHH--------HHHHHHHCCCCCHHHHHHHHHHHCCCHHH
T ss_conf ---6-----65565677788785879999999--------99999976998999999999997849898
No 134
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=92.10 E-value=0.25 Score=26.71 Aligned_cols=43 Identities=7% Similarity=-0.020 Sum_probs=28.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH---HHHHHCCCHH
Q ss_conf 389999997799999999741488999899999---9998289999
Q gi|254781218|r 128 SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK---IKQVTKKHLD 170 (205)
Q Consensus 128 sq~elA~~lgis~~tis~~E~g~~~Ps~~~l~k---Ia~~lgvs~d 170 (205)
|.+|+|+.+|+|.+|+|+..||....+-++-.+ +|+-+|..++
T Consensus 2 Ti~DIA~~aGVS~~TVSraLn~~~~vs~~tr~rV~~~a~elgY~pn 47 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPS 47 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 6899999989699999999679799999999999999999589889
No 135
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=92.00 E-value=0.26 Score=26.63 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 999999999998599889999984899999998877
Q gi|254781218|r 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 (205)
Q Consensus 31 ~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~ 66 (205)
+++.-++.+-. .|+||+++|+.+|.|+++|+++=.
T Consensus 40 e~A~~~~~l~~-~g~t~~~iA~~lg~s~~~V~~~l~ 74 (178)
T 1r71_A 40 EIADFIGRELA-KGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999998-178899999996999999999999
No 136
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=91.88 E-value=0.34 Score=25.89 Aligned_cols=40 Identities=30% Similarity=0.471 Sum_probs=22.9
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 97298389999997799999999741488999899999999828
Q gi|254781218|r 123 KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 (205)
Q Consensus 123 ~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lg 166 (205)
...| ++..+|+.+||+++++++| |...| .....+|.++.+
T Consensus 8 ~~fG-~~~~lA~~lgIs~~aVsqW--g~~VP-~~ra~~iE~~T~ 47 (61)
T 1rzs_A 8 DHFG-TQRAVAKALGISDAAVSQW--KEVIP-EKDAYRLEIVTA 47 (61)
T ss_dssp HHHS-SHHHHHHHHTCCHHHHHHC--CSBCC-HHHHHHHHHHTT
T ss_pred HHHC-CHHHHHHHHCCCHHHHHHC--CCCCC-HHHHHHHHHHHC
T ss_conf 9968-9999999969999999874--77798-999999999959
No 137
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=91.87 E-value=0.21 Score=27.19 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHCC
Q ss_conf 13455467779999999997298389999997-7999999997414
Q gi|254781218|r 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQG 149 (205)
Q Consensus 105 ~~~~~d~~~iG~rLk~lR~~~glsq~elA~~l-gis~~tis~~E~g 149 (205)
....+|...|..+|++..+.++++|.-||+.+ |.++.+++...+.
T Consensus 13 ~~~~ldT~~I~~~v~~eL~~~~I~Q~~Fa~~VL~rSQGtlSdLL~~ 58 (101)
T 1wh6_A 13 MYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSR 58 (101)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHS
T ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHC
T ss_conf 0321579999999999999949869999999982083789999847
No 138
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=91.86 E-value=0.23 Score=26.88 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHCC-CHHHHHHHH
Q ss_conf 7779999999997298--38999999779-999999974
Q gi|254781218|r 112 YAIGARLKSIRKDKGM--SQIEFGKLLGM-PNSTLSNYE 147 (205)
Q Consensus 112 ~~iG~rLk~lR~~~gl--sq~elA~~lgi-s~~tis~~E 147 (205)
..|=..|++.++..|+ |+.|+|+.+|+ |++++++|.
T Consensus 9 ~~il~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~l 47 (202)
T 1jhf_A 9 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHL 47 (202)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHH
T ss_conf 999999999999829896699999984999728999999
No 139
>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 1trr_A* 1tro_A*
Probab=91.84 E-value=0.25 Score=26.69 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHH-CC-CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999999999998-59-9889999984899999998877998889999999
Q gi|254781218|r 29 WKDVGTRIKDIRKA-NN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 (205)
Q Consensus 29 ~~~iG~rik~lR~~-~g-ltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~ 78 (205)
.+.++.|++-++.- .| +||.++++.+|+|..+|+|.-+-...-+..+-..
T Consensus 41 ~~~la~R~~ia~~L~~g~~s~reI~~~~gvS~aTItR~s~~Lk~~~~~~k~~ 92 (101)
T 1jhg_A 41 REALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQW 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999999999999990895799999996986577789899988488789999
No 140
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=91.78 E-value=0.62 Score=24.23 Aligned_cols=123 Identities=11% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCCCHH
Q ss_conf 999999999999985998899999848999999988779988899999999998289999961453221-0000232134
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID-RRYEDVTNKK 107 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~-~~~~~~~~~~ 107 (205)
...+...|+..+...+++|..++..+|+|+++||++.+.....+...--.+ ..|++...... .....-....
T Consensus 28 p~~~a~~Ik~~l~~~~i~q~~~~~~~~~Sqs~is~~l~~~~~~~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~~ 100 (194)
T 1ic8_A 28 PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAAL-------YTWYVRKQREVAQQFTHAGQGG 100 (194)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHHHHH-------HHHHHHHTTTTHHHHCCC----
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 099999999999982899533565667786540224568998665564333-------4211134333332345677887
Q ss_pred -HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf -5546777999999-9997298389999997799999999741488999899999999828
Q gi|254781218|r 108 -RLDPYAIGARLKS-IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 (205)
Q Consensus 108 -~~d~~~iG~rLk~-lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lg 166 (205)
..++..-+..-+. -|..--+|..++. .+-++-.-...|+......||+.++
T Consensus 101 ~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~--------~Le~~F~~~~yP~~~~r~~LA~~lN 153 (194)
T 1ic8_A 101 LIEEPTGDELPTKKGRRNRFKWGPASQQ--------ILFQAYERQKNPSKEERETLVEECN 153 (194)
T ss_dssp ----------------CCCCCCCHHHHH--------HHHHHHHHHCCCCTTTTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHH--------HHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 7777777777765668898889999999--------9999996069979999999999964
No 141
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=91.53 E-value=0.45 Score=25.08 Aligned_cols=58 Identities=14% Similarity=-0.034 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHCCCCCCCH------HHHHHHHHHHCCC
Q ss_conf 99999999999998599889999984-8999999988779988899------9999999982899
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSI------RYALYLRNEYEIS 86 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~-gis~~~is~~E~G~~~psi------~~l~~la~~~~vs 86 (205)
-++|..+|++.-+..+++|+-||+.+ |.++.++|.+=+.+..|.. +.++.+-+.|+.+
T Consensus 19 T~~ia~~i~~eL~~~~I~Q~~FAk~VL~rSQGtLSdLLr~~~~PkPw~ksgre~~~rm~~wL~lP 83 (101)
T 2csf_A 19 TAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLP 83 (101)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCH
T ss_conf 99999999999998486599999999801711799998464799975402578999999998182
No 142
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=91.41 E-value=0.32 Score=25.98 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCC
Q ss_conf 023213455467779999999997298389999997799999999741488999
Q gi|254781218|r 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 (205)
Q Consensus 101 ~~~~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps 154 (205)
....++..+++..++..++.+... |+|+.++|+.+|.++++++++..=...|.
T Consensus 28 ~EN~qR~~l~~~e~A~~~~~l~~~-g~t~~~iA~~lg~s~~~V~~~l~l~~lp~ 80 (178)
T 1r71_A 28 IENLQRNELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLDLPE 80 (178)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGGSCCH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHCCCCH
T ss_conf 998650689999999999999981-78899999996999999999999806999
No 143
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=91.29 E-value=0.14 Score=28.30 Aligned_cols=64 Identities=6% Similarity=0.079 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHCCCCC-------------CCHHHHHHHHHHHCCCH
Q ss_conf 34554677799999999-972983899999977999999997414889-------------99899999999828999
Q gi|254781218|r 106 KKRLDPYAIGARLKSIR-KDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-------------PEIKPARKIKQVTKKHL 169 (205)
Q Consensus 106 ~~~~d~~~iG~rLk~lR-~~~glsq~elA~~lgis~~tis~~E~g~~~-------------Ps~~~l~kIa~~lgvs~ 169 (205)
...++++..|...+.+. ...|+||.++|+.+|+++++++++.+=-.. .+...+..|.+++...-
T Consensus 21 ~r~lS~~E~a~~y~rlL~~~~~~tq~eLA~~lG~Srs~VS~~L~l~~LP~~I~~~~~~~~~is~~~a~~L~~l~~~~~ 98 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQKAFTDKE 98 (189)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHHSCHHHHHTSSSGGGSCHHHHHHHHHHTTTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCH
T ss_conf 898999999999999998643888999999979799999999988658999999975449879899999980410068
No 144
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=90.45 E-value=0.4 Score=25.45 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHCCCCCC
Q ss_conf 467779999999997298389999997-79999999974148899
Q gi|254781218|r 110 DPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIP 153 (205)
Q Consensus 110 d~~~iG~rLk~lR~~~glsq~elA~~l-gis~~tis~~E~g~~~P 153 (205)
+...|..+|++..+..+++|.-||+.+ |.++.+++.+.+.-..|
T Consensus 18 ~T~eI~~~v~~eL~~~~IsQ~~Fa~~vL~rSQGtlSdLL~~PK~p 62 (101)
T 1wiz_A 18 VSPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDP 62 (101)
T ss_dssp CCTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCH
T ss_conf 189999999999999598799999999753828899999579982
No 145
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=90.08 E-value=0.39 Score=25.46 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=28.0
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 85998899999848999999988779988899999999998
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~ 82 (205)
..| +|..||+.+||++++||+| |.. ++....+.|-..
T Consensus 9 ~fG-~~~~lA~~lgIs~~aVsqW--g~~-VP~~ra~~iE~~ 45 (61)
T 1rzs_A 9 HFG-TQRAVAKALGISDAAVSQW--KEV-IPEKDAYRLEIV 45 (61)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHC--CSB-CCHHHHHHHHHH
T ss_pred HHC-CHHHHHHHHCCCHHHHHHC--CCC-CCHHHHHHHHHH
T ss_conf 968-9999999969999999874--777-989999999999
No 146
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=89.41 E-value=0.39 Score=25.47 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=22.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 9999999729838999999779999999974148
Q gi|254781218|r 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 117 rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~ 150 (205)
.++.++ ..|.+..++|..+||+++|+.+|....
T Consensus 13 ~a~~l~-~~G~s~~~iA~~~gVsr~TlYrylp~~ 45 (52)
T 1jko_C 13 QISRLL-EKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHH-HTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHH-HCCCCHHHHHHHHCCCHHHHHHHCCCH
T ss_conf 999999-978989999999797999999985130
No 147
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=89.28 E-value=0.55 Score=24.56 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=15.7
Q ss_pred HHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 779999999-9972983899999977999999997
Q gi|254781218|r 113 AIGARLKSI-RKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 113 ~iG~rLk~l-R~~~glsq~elA~~lgis~~tis~~ 146 (205)
+++.|+.-+ +-..|.++.+.++.+|+|..||++.
T Consensus 44 ~la~R~~va~lL~~g~syreIa~~~gvS~aTIsRv 78 (107)
T 3frw_A 44 SLSQRFEVAKMLTDKRTYLDISEKTGASTATISRV 78 (107)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999886999999999969874758999
No 148
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=89.02 E-value=0.4 Score=25.45 Aligned_cols=24 Identities=8% Similarity=0.028 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 998899999848999999988779
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLFENG 67 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~E~G 67 (205)
-..|..+|+.+|++.|+||+|-+|
T Consensus 24 ~~Gq~~vA~~~Gv~eStISRwK~~ 47 (83)
T 1zs4_A 24 MLGTEKTAEAVGVDKSQISRWKRD 47 (83)
T ss_dssp HHCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHCCHHHHHHHCCCHHHHHHHCCC
T ss_conf 855299999969989998730134
No 149
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=88.95 E-value=0.063 Score=30.40 Aligned_cols=152 Identities=9% Similarity=0.065 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH-----HCCCCCCCHH--------------------
Q ss_conf 015668999999999999999985998899999848999999988-----7799888999--------------------
Q gi|254781218|r 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF-----ENGMCSTSIR-------------------- 74 (205)
Q Consensus 20 ~~~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~-----E~G~~~psi~-------------------- 74 (205)
.+.||+.+...+==.-++.+--..|+||.++|+++|+|+.+|+++ |.|...+++.
T Consensus 10 ~~~p~~~~~~~~R~~il~~lyy~~~~~q~~IA~~lg~Sr~~V~r~l~~ar~~GiV~i~~~g~~~t~~g~~~~~~l~~~~~ 89 (345)
T 2o0m_A 10 AVAPDMLDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPSKSGMTLTERGLEVYQGLELVMN 89 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEECCHHHHHHHHHHHHHC
T ss_conf 97528999999999999999884897999999884997759999999999879779964772351004788887886515
Q ss_pred -------HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHCC
Q ss_conf -------99999998289999961453221000023213-4554677799999999972--------9838999999779
Q gi|254781218|r 75 -------YALYLRNEYEISFDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSIRKDK--------GMSQIEFGKLLGM 138 (205)
Q Consensus 75 -------~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~-~~~d~~~iG~rLk~lR~~~--------glsq~elA~~lgi 138 (205)
.-..|.+.|++.--.++.+ ..+..+. ...--.+.+..|..+.+.- |-|..++++.+.-
T Consensus 90 ~~~~~~~Le~~L~~~fgL~~~~Vvp~------~~~~~~~~~~~lg~aaA~~L~~~l~~gd~vIgvswG~Tl~~~~~~l~~ 163 (345)
T 2o0m_A 90 QLLGMHQIEKEMTQYFGIQRCIVVAG------DSDIQKKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGS 163 (345)
T ss_dssp -----CHHHHHHHHHHTCSEEEEESS------CTTTCTHHHHHHHHHHHHHHHHHCCSEEEEEEECCSHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECC------CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 22157999999999829978999489------766738999999999999999864369979999353899999997331
Q ss_pred CHHHHHH----HHCCCCC-----CCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 9999999----7414889-----9989999999982899999524721
Q gi|254781218|r 139 PNSTLSN----YEQGRTI-----PEIKPARKIKQVTKKHLDWIYFGDE 177 (205)
Q Consensus 139 s~~tis~----~E~g~~~-----Ps~~~l~kIa~~lgvs~d~L~~G~e 177 (205)
....-.+ -..|... ..-.....+|+.++-...+|....-
T Consensus 164 ~~~~~~~v~~v~~~g~~~~~~~~~~~~i~~~lA~~~~~~~~~L~aP~~ 211 (345)
T 2o0m_A 164 LETEKRHNLFVPARGGIGEAVSVQANSISAVMANKTGGNYRALYVPEQ 211 (345)
T ss_dssp CCCSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHHTCEECCCCCCSS
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 368887189996677677777778889999999980996344337553
No 150
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=88.87 E-value=0.61 Score=24.27 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=21.4
Q ss_pred HHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 779999999-997298389999997799999999741
Q gi|254781218|r 113 AIGARLKSI-RKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 113 ~iG~rLk~l-R~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
+++.|+.-+ +-..|.++.+.++.+|+|..||++.-+
T Consensus 61 ~la~R~~Va~lL~~g~syreIa~~tgvS~aTIsRV~r 97 (119)
T 3kor_A 61 SLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999988599999999996987454799999
No 151
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: a.35.1.6
Probab=88.64 E-value=1.2 Score=22.59 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=19.2
Q ss_pred HHHHHHHCCCCHHHHHHHHC--CCHHHHHHHHCCCCCCCHHH
Q ss_conf 99999985998899999848--99999998877998889999
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGAN--QLESAVNLFENGMCSTSIRY 75 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~g--is~~~is~~E~G~~~psi~~ 75 (205)
+..+|+..-||-.|-|.-++ ++..+-.+||+|...++.++
T Consensus 8 LqalR~if~m~v~EaA~~I~~~~~s~tWQ~WE~G~~~IP~~V 49 (120)
T 1s4k_A 8 LQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEI 49 (120)
T ss_dssp HHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 999999999539999999965776899999975897899999
No 152
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.30 E-value=1.2 Score=22.45 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH-----CCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 99999999999999859988999998489999999887-----7998889999999999828999996145322100002
Q gi|254781218|r 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE-----NGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 (205)
Q Consensus 28 ~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E-----~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~ 102 (205)
+..++=.||-.+- ..|+++.++|..++|+++++++|= .|...|. ...
T Consensus 33 Ls~dlR~rIV~~~-~~G~s~r~IArrf~VS~stV~kii~r~retG~~~p~---------------------------~~g 84 (149)
T 1k78_A 33 LPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPG---------------------------VIG 84 (149)
T ss_dssp CCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCC---------------------------CCC
T ss_pred CCHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC---------------------------CCC
T ss_conf 9899999999999-969999999998894999999999999981888888---------------------------778
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHH---C-------CCHHHHHHHHCCCCC
Q ss_conf 3213455467779999999-997298389999997---7-------999999997414889
Q gi|254781218|r 103 VTNKKRLDPYAIGARLKSI-RKDKGMSQIEFGKLL---G-------MPNSTLSNYEQGRTI 152 (205)
Q Consensus 103 ~~~~~~~d~~~iG~rLk~l-R~~~glsq~elA~~l---g-------is~~tis~~E~g~~~ 152 (205)
-.......+... ..|.++ +..-+++..|+++.+ | .|.++|+++.+.+..
T Consensus 85 g~rp~~~t~~~~-~~I~~~v~~~P~itl~EL~~~L~~~gv~~~~~~pS~StI~RiLR~k~~ 144 (149)
T 1k78_A 85 GSKPKVATPKVV-EKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CCCCSSSCHHHH-HHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCCCCCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 989986799999-999999987897559999999998588667889889899999976513
No 153
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=87.83 E-value=1.3 Score=22.27 Aligned_cols=94 Identities=17% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 99999999998---599889999984899999998877998889999999999828999996145322100002321345
Q gi|254781218|r 32 VGTRIKDIRKA---NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 (205)
Q Consensus 32 iG~rik~lR~~---~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~ 108 (205)
|.+-+..+... ..+|..+||+.+|+|++++++. +...+++++...+..
T Consensus 5 i~~~~~~i~~~~~~~~~~l~~lA~~~~~s~~~l~r~--------------fk~~~g~s~~~~i~~--------------- 55 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHL--------------FRQQLGISVLSWRED--------------- 55 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHH--------------HHHHHSSCHHHHHHH---------------
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH--------------HHHHHCCCHHHHHHH---------------
T ss_conf 999999999756799979999999989299999999--------------999989198999988---------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 5467779999999997298389999997799-999999741488999899999999828999995
Q gi|254781218|r 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 (205)
Q Consensus 109 ~d~~~iG~rLk~lR~~~glsq~elA~~lgis-~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L 172 (205)
..+ .+.+.+....+++..|+|..+|.+ .+.+++ ...+.+|++|..+
T Consensus 56 ---~Rl-~~a~~lL~~~~~si~~IA~~~Gf~~~~~f~r--------------~Fk~~~G~tP~~y 102 (107)
T 2k9s_A 56 ---QRI-SQAKLLLSTTRMPIATVGRNVGFDDQLYFSR--------------VFKKCTGASPSEF 102 (107)
T ss_dssp ---HHH-HHHHHHHHHCCCCHHHHHHHTTCCCHHHHHH--------------HHHHHHSSCHHHH
T ss_pred ---HHH-HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH--------------HHHHHHCCCHHHH
T ss_conf ---899-9898988666831857999849998899999--------------9999889099999
No 154
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=87.82 E-value=0.3 Score=26.17 Aligned_cols=24 Identities=4% Similarity=0.050 Sum_probs=15.8
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 859988999998489999999887
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFE 65 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E 65 (205)
..|.|..++|..+||++++|++|=
T Consensus 21 ~~g~s~~~vA~~~GIs~~tl~~W~ 44 (97)
T 2jn6_A 21 SDGASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp GGGSCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCHHH
T ss_conf 499859999999789957446899
No 155
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=87.66 E-value=0.94 Score=23.14 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHCCCCCCC
Q ss_conf 779999999997298389999997-799999999741488999
Q gi|254781218|r 113 AIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPE 154 (205)
Q Consensus 113 ~iG~rLk~lR~~~glsq~elA~~l-gis~~tis~~E~g~~~Ps 154 (205)
.|..+|++..+..+++|.-||+.+ |.++.++|...+.-..|.
T Consensus 11 eI~~~i~~eL~~~~I~Q~~Fak~VL~rsQGtlSdLLr~Pk~pw 53 (93)
T 2o4a_A 11 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPK 53 (93)
T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCH
T ss_conf 9999999999985764999999998107058999983899961
No 156
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=87.42 E-value=0.09 Score=29.44 Aligned_cols=44 Identities=11% Similarity=-0.034 Sum_probs=34.3
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH---HHHHHC
Q ss_conf 98599889999984899999998877998889999999---999828
Q gi|254781218|r 41 KANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY---LRNEYE 84 (205)
Q Consensus 41 ~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~---la~~~~ 84 (205)
..+..|.+++|+.+|||.+|||+.=||....|-++-.+ +++.++
T Consensus 9 ~~k~vTikdIA~~aGVS~~TVSr~Ln~~~~Vs~~Tr~rV~~~a~elg 55 (355)
T 3e3m_A 9 GHRPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMN 55 (355)
T ss_dssp -----------------------------------------------
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99997699999998859999999968989999999999999999959
No 157
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=87.20 E-value=0.37 Score=25.65 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.5
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 997298389999997799999999741
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
+...|.|..++|..+||+.+++++|-.
T Consensus 19 ~~~~g~s~~~vA~~~GIs~~tl~~W~k 45 (97)
T 2jn6_A 19 ENSDGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp TTGGGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHCCCCCCCCHHHH
T ss_conf 984998599999997899574468999
No 158
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=86.89 E-value=1.2 Score=22.46 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999999985998899999848999999988
Q gi|254781218|r 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 31 ~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+-..=++.+|+...+|..|+|+.+|+|+++|+++
T Consensus 40 N~~~il~~i~~~g~iSR~ela~~tgLS~~Tvs~i 73 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESELAPASITKI 73 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999849918999998879599999999
No 159
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=86.87 E-value=0.64 Score=24.15 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 99999999859988999998489999999887799
Q gi|254781218|r 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 (205)
Q Consensus 34 ~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~ 68 (205)
+=|..++...++++.++|+..||++++|++|-+++
T Consensus 15 ~vi~~~~~~~~~~~~~iAk~fgv~~sTi~~~~k~k 49 (131)
T 1hlv_A 15 RIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNK 49 (131)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999997788889999999891999999999247
No 160
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=86.78 E-value=0.1 Score=29.08 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=33.7
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH---HHHHHHHC
Q ss_conf 85998899999848999999988779988899999---99999828
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA---LYLRNEYE 84 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l---~~la~~~~ 84 (205)
.+..|-+++|+.+|||.+|||+.=||....|-++- .++++.++
T Consensus 2 ~m~vTi~dIA~~aGVS~~TVSraLn~~~~Vs~~tr~rI~~~a~~lg 47 (339)
T 3h5o_A 2 SLGVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALA 47 (339)
T ss_dssp ----------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9731199999998979999999968989999999999999999978
No 161
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=86.73 E-value=0.1 Score=29.05 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH---HHHHCCCH
Q ss_conf 2983899999977999999997414889998999999---99828999
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI---KQVTKKHL 169 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kI---a~~lgvs~ 169 (205)
+..|.+|+|+.+|+|.+|+|+..||+...+.++-.+| ++.+|..+
T Consensus 3 m~vTi~dIA~~aGVS~~TVSraLn~~~~Vs~~tr~rI~~~a~~lgY~p 50 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALAYVP 50 (339)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 731199999998979999999968989999999999999999978975
No 162
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=86.70 E-value=0.1 Score=29.04 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=34.1
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH---HHHHHCCCHH
Q ss_conf 7298389999997799999999741488999899999---9998289999
Q gi|254781218|r 124 DKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK---IKQVTKKHLD 170 (205)
Q Consensus 124 ~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~k---Ia~~lgvs~d 170 (205)
.+-.|.+|+|+.+|+|.+|+|+..||....+.++..+ +|+.||..++
T Consensus 10 ~k~vTikdIA~~aGVS~~TVSr~Ln~~~~Vs~~Tr~rV~~~a~elgY~pn 59 (355)
T 3e3m_A 10 HRPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNYVPD 59 (355)
T ss_dssp --------------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99976999999988599999999689899999999999999999599738
No 163
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=86.55 E-value=1.5 Score=21.82 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 99999999999998599889999984899999998877998889999999999828999996145322100002321345
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~ 108 (205)
..++=.||-.+ -..|++..++|..++||++++++|=.-.... |..-+.+. .-.....
T Consensus 27 p~~lR~rIv~l-~~~G~s~r~IArrl~VS~stV~kil~R~ret---------------------G~~~p~~~-gg~rp~~ 83 (159)
T 2k27_A 27 PEVVRQRIVDL-AHQGVRPCDISRQLRVSHGCVSKILGRYYET---------------------GSIRPGVI-GGSKPKV 83 (159)
T ss_dssp CHHHHHHHHHH-HHHTCCHHHHHHHHTCCSHHHHHHHCCSSTT---------------------SCCCCCCC-CCCCCCC
T ss_pred CHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---------------------CCCCCCCC-CCCCCCC
T ss_conf 89999999999-9869999999998895999999999999863---------------------88787878-8989886
Q ss_pred HHHHHHHHHHHHH-HHHCCCCHHHHHHHH---CCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 5467779999999-997298389999997---7999999997414889998999999998
Q gi|254781218|r 109 LDPYAIGARLKSI-RKDKGMSQIEFGKLL---GMPNSTLSNYEQGRTIPEIKPARKIKQV 164 (205)
Q Consensus 109 ~d~~~iG~rLk~l-R~~~glsq~elA~~l---gis~~tis~~E~g~~~Ps~~~l~kIa~~ 164 (205)
.++..+ ..|.++ +..-+++..|+.+.+ |+- .+.+.|++.++-+|-+.
T Consensus 84 ~t~~v~-~~I~~~~~~~P~~t~~ELr~~L~~~gi~--------~~~~vPSvStI~RiLR~ 134 (159)
T 2k27_A 84 ATPKVV-EKIGDYKRQNPTMFAWEIRDRLLAEGVC--------DNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCTTHH-HHHHHHHHHCSSSCHHHHHHHHHHHTCS--------CTTTSCCHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCCCC--------CCCCCCCHHHHHHHHHH
T ss_conf 778999-9999999868752399999999873786--------78989879999999987
No 164
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=86.51 E-value=1.2 Score=22.56 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHCCCHHHHHH
Q ss_conf 99999999999998599--889999984899999998
Q gi|254781218|r 29 WKDVGTRIKDIRKANNK--TQKEMAIGANQLESAVNL 63 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gl--tQ~elA~~~gis~~~is~ 63 (205)
.++|=+.|+.+++.+|+ |+.|+|+++|++.++...
T Consensus 7 q~~il~~I~~~~~~~G~~PS~reIa~~~Giss~s~v~ 43 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALL 43 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 9999999999999849896699999982999645788
No 165
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=86.13 E-value=0.12 Score=28.74 Aligned_cols=46 Identities=11% Similarity=-0.083 Sum_probs=34.1
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH---HHHHHHHHCCCH
Q ss_conf 8599889999984899999998877998889999---999999828999
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY---ALYLRNEYEISF 87 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~---l~~la~~~~vs~ 87 (205)
...-|.+++|+.+|||.+|||++=||....|-++ +..+++.++-.+
T Consensus 6 k~r~Ti~dIA~~aGVS~~TVSr~Ln~~~~Vs~~tr~rV~~~a~~lgY~p 54 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALADNPAVAASTRERIQQLASDLGYRA 54 (348)
T ss_dssp -------------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9997399999998869999999968989999999999999999958987
No 166
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=85.80 E-value=1.7 Score=21.59 Aligned_cols=70 Identities=9% Similarity=0.131 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 59988999998489999999887799888999999999982899999614532210000232134554677799999999
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~~iG~rLk~lR 122 (205)
.+++.+++|..+|+|++++++. +...+++++...+.. ..+ .+.+.+.
T Consensus 18 ~~l~l~~lA~~~~~s~~~l~r~--------------fk~~~g~s~~~yi~~------------------~Rl-~~a~~lL 64 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSSGYLSIM--------------FKKNFGIPFQDYLLQ------------------KRM-EKAKLLL 64 (103)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHH--------------HHHHHSSCHHHHHHH------------------HHH-HHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH--------------HHHHHCCCHHHHHHH------------------HHH-HHHHHHH
T ss_conf 9989999999989299999999--------------999889099999997------------------899-9998898
Q ss_pred HHCCCCHHHHHHHHCC-CHHHHHH
Q ss_conf 9729838999999779-9999999
Q gi|254781218|r 123 KDKGMSQIEFGKLLGM-PNSTLSN 145 (205)
Q Consensus 123 ~~~glsq~elA~~lgi-s~~tis~ 145 (205)
..-+++..++|..+|. +.+.+++
T Consensus 65 ~~~~~si~~IA~~~Gf~~~~~f~r 88 (103)
T 3lsg_A 65 LTTELKNYEIAEQVGFEDVNYFIT 88 (103)
T ss_dssp HHCCCCHHHHHHHTTCSCHHHHHH
T ss_pred HCCCCCHHHHHHHHHCCCHHHHHH
T ss_conf 778963999999985799899999
No 167
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=85.52 E-value=0.86 Score=23.37 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999999985998899999848999999988
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
..+.+.=++.+|+...+|..|||+.+|+|++||+++
T Consensus 15 ~~N~~~Il~~i~~~g~iSR~ela~~~gls~~Tvs~i 50 (406)
T 1z6r_A 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKI 50 (406)
T ss_dssp HHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999999999859918999998879599999999
No 168
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=85.37 E-value=1.8 Score=21.46 Aligned_cols=91 Identities=10% Similarity=0.078 Sum_probs=58.0
Q ss_pred HHHHHHH--HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9999999--85998899999848999999988779988899999999998289999961453221000023213455467
Q gi|254781218|r 35 RIKDIRK--ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPY 112 (205)
Q Consensus 35 rik~lR~--~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~ 112 (205)
=+..++. ...++.+++|+.+|+|++++++. +...+++++-..+.. .
T Consensus 16 i~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~--------------fk~~~g~s~~~~i~~------------------~ 63 (129)
T 1bl0_A 16 ILDWIEDNLESPLSLEKVSERSGYSKWHLQRM--------------FKKETGHSLGQYIRS------------------R 63 (129)
T ss_dssp HHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHH--------------HHHHHSSCHHHHHHH------------------H
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH--------------HHHHHCCCHHHHHHH------------------H
T ss_conf 99999982489999999999989299999999--------------999869094477843------------------7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 77999999999729838999999779-9999999741488999899999999828999995
Q gi|254781218|r 113 AIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 (205)
Q Consensus 113 ~iG~rLk~lR~~~glsq~elA~~lgi-s~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L 172 (205)
.+ .+.+.+...-+++..++|..+|. +.+.++ ....+.+|++|..+
T Consensus 64 Rl-~~a~~~L~~~~~si~~IA~~~Gf~~~s~F~--------------r~Fk~~~G~tP~~y 109 (129)
T 1bl0_A 64 KM-TEIAQKLKESNEPILYLAERYGFESQQTLT--------------RTFKNYFDVPPHKY 109 (129)
T ss_dssp HH-HHHHHHHHHCCCCHHHHHHHTTCSCHHHHH--------------HHHHHHHSSCHHHH
T ss_pred HH-HHHHHHHHCCCCCHHHHHHHHCCCCHHHHH--------------HHHHHHHCCCHHHH
T ss_conf 99-999999876799999999996899878999--------------99999989099999
No 169
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=85.04 E-value=0.14 Score=28.22 Aligned_cols=46 Identities=9% Similarity=-0.015 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH---HHHHCCCHH
Q ss_conf 2983899999977999999997414889998999999---998289999
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI---KQVTKKHLD 170 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kI---a~~lgvs~d 170 (205)
+--|.+|+|+.+|+|.+|+|+..||....+.++..+| |+.+|..++
T Consensus 7 ~r~Ti~dIA~~aGVS~~TVSr~Ln~~~~Vs~~tr~rV~~~a~~lgY~pn 55 (348)
T 3bil_A 7 FRPTLKDVARQAGVSIATASRALADNPAVAASTRERIQQLASDLGYRAN 55 (348)
T ss_dssp -------------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9973999999988699999999689899999999999999999589879
No 170
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=85.03 E-value=0.14 Score=28.22 Aligned_cols=46 Identities=17% Similarity=0.065 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH---HHHHHHHCCCHH
Q ss_conf 5998899999848999999988779988899999---999998289999
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA---LYLRNEYEISFD 88 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l---~~la~~~~vs~d 88 (205)
...|-+++|+.+|||.+|||+.=||....+-++- ...++.++-.++
T Consensus 4 ~~~Ti~DIA~~aGVS~~TVSraLn~~~~vs~~tr~rV~~~a~~lgY~pn 52 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPN 52 (332)
T ss_dssp -------------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9876999999979799999999689699999999999999999589768
No 171
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622}
Probab=84.41 E-value=0.48 Score=24.95 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHC--CCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 599889999984899999998877--998889999999999828999996145322100002321345546777999999
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFEN--GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~--G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~~iG~rLk~ 120 (205)
..++-.++|+.+|++.++|-.||+ |.-.|.-. +.....+- .. +....-..|+.
T Consensus 4 ~~y~I~eva~~~gvs~~tlR~ye~~~gl~~p~r~-------------------~~~g~R~Y-----~~-~~i~~l~~I~~ 58 (81)
T 2jml_A 4 MTLRIRTIARMTGIREATLRAWERRYGFPRPLRS-------------------EGNNYRVY-----SR-EEVEAVRRVAR 58 (81)
T ss_dssp CCEEHHHHHHTTSTTHHHHHHHHHHTCCSCCBSS-------------------SCSSSCEE-----CH-HHHHHHHHHHH
T ss_pred CEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCEEE-------------------CCCCCEEC-----CH-HHHHHHHHHHH
T ss_conf 5355999999988599999999982699986256-------------------89973667-----89-99999999999
Q ss_pred HHHHCCCCHHHHHHHHC
Q ss_conf 99972983899999977
Q gi|254781218|r 121 IRKDKGMSQIEFGKLLG 137 (205)
Q Consensus 121 lR~~~glsq~elA~~lg 137 (205)
+.++.|++..+....+.
T Consensus 59 l~~~~G~si~~i~~~l~ 75 (81)
T 2jml_A 59 LIQEEGLSVSEAIAQVK 75 (81)
T ss_dssp HHHHTSTHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHH
T ss_conf 99986998999999986
No 172
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=84.32 E-value=0.16 Score=27.91 Aligned_cols=46 Identities=17% Similarity=-0.008 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH---HHHHHHHHHCCCHHH
Q ss_conf 9988999998489999999887799888999---999999982899999
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLFENGMCSTSIR---YALYLRNEYEISFDW 89 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~E~G~~~psi~---~l~~la~~~~vs~d~ 89 (205)
.-|-+|+|+.+|||.+|||++=||....|-+ ...++++.++-.++.
T Consensus 3 ~~Ti~DIA~~aGVS~~TVSrvLn~~~~vs~~tr~rI~~~a~elgY~pn~ 51 (338)
T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNL 51 (338)
T ss_dssp -------------------------------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 7889999999797999999996897999999999999999994898787
No 173
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=84.14 E-value=0.92 Score=23.19 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHCCCC
Q ss_conf 779999999997298389999997-799999999741488
Q gi|254781218|r 113 AIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRT 151 (205)
Q Consensus 113 ~iG~rLk~lR~~~glsq~elA~~l-gis~~tis~~E~g~~ 151 (205)
.|..+|++..+..+++|.-||+.+ |.++.+++...+.-.
T Consensus 25 ~i~~~v~~eL~~~~I~Q~~Fa~~vl~rsQgtlsdLL~~PK 64 (141)
T 1yse_A 25 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEE 64 (141)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 9999999999984877999999998228188999985899
No 174
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=83.77 E-value=0.17 Score=27.67 Aligned_cols=45 Identities=16% Similarity=-0.098 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCH---HHHHHHHHHHCCCH
Q ss_conf 5998899999848999999988779988899---99999999828999
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSI---RYALYLRNEYEISF 87 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi---~~l~~la~~~~vs~ 87 (205)
+..|-+++|+.+|||.+|||+.=||....|- +....+++.++-.+
T Consensus 2 kk~Ti~dIA~~aGVS~sTVSraLn~~~~Vs~~tr~rV~~~a~~lgY~p 49 (349)
T 1jye_A 2 KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIP 49 (349)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 977699999998869999999967969999999999999999978985
No 175
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=83.73 E-value=1 Score=22.89 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH-CCCCCCC
Q ss_conf 59988999998489999999887-7998889
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFE-NGMCSTS 72 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E-~G~~~ps 72 (205)
+.+|-.++|+.+|+|.++|-.|| .|.-.|.
T Consensus 1 M~ytI~e~A~~~gvs~~tlR~Ye~~GLl~p~ 31 (109)
T 1r8d_A 1 MKYQVKQVAEISGVSIRTLHHYDNIELLNPS 31 (109)
T ss_dssp CCBCHHHHHHHHSCCHHHHHHHHHTTSSCCS
T ss_pred CCEEHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 9510999999989699999999985894877
No 176
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=83.73 E-value=1.9 Score=21.22 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 134554677799999999972983899999977999999997414889998999999998289999
Q gi|254781218|r 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 (205)
Q Consensus 105 ~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d 170 (205)
.+..+++...+.-++.+ ...|+|+.++|+.+|++.++++++..=...|. +....+.. -.+++.
T Consensus 114 ~R~~lsp~e~a~~~~~l-~~~g~t~~~iA~~lg~s~~~V~~~l~L~~Lp~-~i~~~~~~-g~it~~ 176 (230)
T 1vz0_A 114 QREDLSPVEEARGYQAL-LEMGLTQEEVARRVGKARSTVANALRLLQLPP-EALEALER-GEITAG 176 (230)
T ss_dssp HSTTCCHHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHGGGSCH-HHHHHHHT-TSSCHH
T ss_pred CCCCCCHHHHHHHHHHH-HHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHHC-CCCCHH
T ss_conf 60589889999999999-88418999999880999999999998751899-99999985-999989
No 177
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=83.06 E-value=2.2 Score=20.84 Aligned_cols=71 Identities=8% Similarity=-0.011 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 59988999998489999999887799888999999999982899999614532210000232134554677799999999
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~~iG~rLk~lR 122 (205)
..+|.+++|+.+|+|++++++. +.+.+++++-..+.. ..+ ...+.+.
T Consensus 20 ~~~sl~~la~~~~~s~~~l~r~--------------fk~~~g~s~~~yi~~------------------~Rl-~~a~~~L 66 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQL--------------FQKEMGEHFTDYLNR------------------YRV-NYAKEEL 66 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHH--------------HHHHHSSCHHHHHHH------------------HHH-HHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH--------------HHHHHCCCHHHHHHH------------------HHH-HHHHHHH
T ss_conf 9999999999989299999999--------------999989787999998------------------988-7789862
Q ss_pred HHCCCCHHHHHHHHCC-CHHHHHHH
Q ss_conf 9729838999999779-99999997
Q gi|254781218|r 123 KDKGMSQIEFGKLLGM-PNSTLSNY 146 (205)
Q Consensus 123 ~~~glsq~elA~~lgi-s~~tis~~ 146 (205)
..-+++..+.|..+|. +.+.+++.
T Consensus 67 ~~~~~~i~~IA~~~Gf~~~s~F~~~ 91 (108)
T 3oou_A 67 LQTKDNLTIIAGKSGYTDMAYFYRQ 91 (108)
T ss_dssp HHCCCCHHHHHHHTTCCCHHHHHHH
T ss_pred HCCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 0455459999999299988999999
No 178
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=82.98 E-value=0.95 Score=23.09 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHC-CCCCCC
Q ss_conf 99889999984899999998877-998889
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLFEN-GMCSTS 72 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~E~-G~~~ps 72 (205)
.+|-.++|+.+|||..+|-.||+ |.-.|.
T Consensus 2 ~msI~e~a~~~gvs~~tLRyYe~~GLl~p~ 31 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYERIGLIPPI 31 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHTSSCCC
T ss_pred CEEHHHHHHHHCCCHHHHHHHHHCCCCCCH
T ss_conf 504999999989498999999987999725
No 179
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=82.78 E-value=1.6 Score=21.78 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=18.0
Q ss_pred HHHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 9999999999-998599889999984899999998877
Q gi|254781218|r 30 KDVGTRIKDI-RKANNKTQKEMAIGANQLESAVNLFEN 66 (205)
Q Consensus 30 ~~iG~rik~l-R~~~gltQ~elA~~~gis~~~is~~E~ 66 (205)
+.|+.-|..- .....+|..+||+.+|||+++|.|+=+
T Consensus 20 ~~Ia~yil~~~~~i~~~si~elA~~~~VS~aTi~Rf~k 57 (107)
T 3iwf_A 20 KKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSK 57 (107)
T ss_dssp HHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999599999776599999897989989999999
No 180
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=82.24 E-value=2.4 Score=20.65 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 983899999977999999997414
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E~g 149 (205)
.+|+.|+|+.+|+++..++++|+.
T Consensus 395 ~~Tl~EIg~~lgvSreRVrQIe~k 418 (438)
T 1l9z_H 395 EHTLEEVGAYFGVTRERIRQIENK 418 (438)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 503999999989799999999999
No 181
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=82.23 E-value=0.021 Score=33.33 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=23.4
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 85998899999848999999988779
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENG 67 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G 67 (205)
.+|+||.+.|..+|.|++.||.+|+.
T Consensus 3 ~kG~tQ~eIA~~LgTSraNVs~IEk~ 28 (122)
T 1nr3_A 3 ERGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CCSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 25787999999977758899999999
No 182
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=82.18 E-value=2.4 Score=20.64 Aligned_cols=83 Identities=8% Similarity=0.043 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 59988999998489999999887799888999999999982899999614532210000232134554677799999999
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~~iG~rLk~lR 122 (205)
..+|.++||..+|+|+.++++.=+ +.+++++...+.. ..+ .+.+.+.
T Consensus 22 ~~~~~~~lA~~~~~s~~~l~r~fk--------------~~~g~s~~~~i~~------------------~Rl-~~a~~lL 68 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFK--------------QYLGTVPSKYYLE------------------LRL-NRARQLL 68 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHH--------------HHTSSCHHHHHHH------------------HHH-HHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH--------------HCCCCCHHHHHHH------------------HHH-HHHHHHH
T ss_conf 999999999998919999999998--------------6079999999999------------------999-9999997
Q ss_pred HHCCCCHHHHHHHHCCC-HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 97298389999997799-999999741488999899999999828999995
Q gi|254781218|r 123 KDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 (205)
Q Consensus 123 ~~~glsq~elA~~lgis-~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L 172 (205)
...+++..++|..+|.+ .+.+++ ...+.+|+++..+
T Consensus 69 ~~~~~~i~~IA~~~Gf~~~~~f~r--------------~Fk~~~G~sP~~y 105 (113)
T 3oio_A 69 QQTSKSIVQIGLACGFSSGPHFSS--------------TYRNHFNITPREE 105 (113)
T ss_dssp HHCCCCHHHHHHHTTCSCHHHHHH--------------HHHHHHSSCHHHH
T ss_pred HCCCCCHHHHHHHHCCCCHHHHHH--------------HHHHHHCCCHHHH
T ss_conf 778999999999819998899999--------------9999989199999
No 183
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 2hcb_A*
Probab=81.65 E-value=2 Score=21.10 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHH
Q ss_conf 9999999982899999614532210000232134554677799999999972983899999977-99999999
Q gi|254781218|r 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSN 145 (205)
Q Consensus 74 ~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lg-is~~tis~ 145 (205)
+.+..+|++|+|+.+.|.+.. +...+. .+..++ +--+|+..++|..+.+..+| -+++|+..
T Consensus 232 ~i~~~v~~~~~i~~~~i~~~~----R~~~i~-----~aR~ia--~yl~r~~~~~s~~~Ig~~fg~rdHsTv~~ 293 (324)
T 1l8q_A 232 QIVEFVANYYAVKVEDILSDK----RNKRTS-----EARKIA--MYLCRKVCSASLIEIARAFKRKDHTTVIH 293 (324)
T ss_dssp HHHHHHHHHHSCCHHHHSSCC----CCSSSH-----HHHHHH--HHHHHHHHCCCHHHHHHHSSCCCSTHHHH
T ss_pred HHHHHHHHHHCCCHHHHHCCC----CCCCCC-----HHHHHH--HHHHHHHHCCCHHHHHHHHCCCCHHHHHH
T ss_conf 888889999698899963788----887560-----999999--99999885789999999948997369999
No 184
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=81.39 E-value=0.24 Score=26.78 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=24.2
Q ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH---HHHHHCCCHHH
Q ss_conf 389999997799999999741488999899999---99982899999
Q gi|254781218|r 128 SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK---IKQVTKKHLDW 171 (205)
Q Consensus 128 sq~elA~~lgis~~tis~~E~g~~~Ps~~~l~k---Ia~~lgvs~d~ 171 (205)
|.+|+|+..|+|..|+|+..||+...+-++-.+ +++.||..++.
T Consensus 5 Ti~DIA~~aGVS~~TVSrvLn~~~~vs~~tr~rI~~~a~elgY~pn~ 51 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNL 51 (338)
T ss_dssp -----------------------------------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 89999999797999999996897999999999999999994898787
No 185
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=81.22 E-value=0.25 Score=26.72 Aligned_cols=40 Identities=18% Similarity=0.018 Sum_probs=30.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH---HHHHHHHCC
Q ss_conf 8899999848999999988779988899999---999998289
Q gi|254781218|r 46 TQKEMAIGANQLESAVNLFENGMCSTSIRYA---LYLRNEYEI 85 (205)
Q Consensus 46 tQ~elA~~~gis~~~is~~E~G~~~psi~~l---~~la~~~~v 85 (205)
|.+|+|+.+|||.+|||+.=||....|-++. ..+++.++=
T Consensus 4 tikdIA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY 46 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNNTGYVSEDAREKIQKVVDELNY 46 (330)
T ss_dssp -------------------------------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8999999989699999999689799999999999999999589
No 186
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17
Probab=81.12 E-value=1.1 Score=22.62 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=20.6
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 8599889999984899999998877
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFEN 66 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~ 66 (205)
-...||+++|+.+||++.++.+|-+
T Consensus 46 g~k~T~~eiAeEvGvsr~TLy~Wk~ 70 (155)
T 2ao9_A 46 EEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 3364799999995746999998860
No 187
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A
Probab=80.71 E-value=1.4 Score=22.13 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=25.4
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHH-CCCCCC
Q ss_conf 99859988999998489999999887-799888
Q gi|254781218|r 40 RKANNKTQKEMAIGANQLESAVNLFE-NGMCST 71 (205)
Q Consensus 40 R~~~gltQ~elA~~~gis~~~is~~E-~G~~~p 71 (205)
+...-||-.|+|+..|||.++|-.|| .|.-.|
T Consensus 7 ~~~~~mtIgEvA~~~gvs~~tLR~YE~~GLl~p 39 (154)
T 2zhg_A 7 RIKALLTPGEVAKRSGVAVSALHFYESKGLITS 39 (154)
T ss_dssp ---CCBCHHHHHHHHTSCHHHHHHHHHTTSSCC
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 224470799999998849999999998879999
No 188
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=80.59 E-value=1.1 Score=22.69 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 99889999984899999998877
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLFEN 66 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~E~ 66 (205)
.+|++++|+.+|+|+..|..+|+
T Consensus 25 ~~tl~eia~~lgvS~erVrqie~ 47 (68)
T 2p7v_B 25 DYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 77899999998969999999999
No 189
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=80.57 E-value=0.27 Score=26.50 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH---HHHHHCCCHH
Q ss_conf 98389999997799999999741488999899999---9998289999
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK---IKQVTKKHLD 170 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~k---Ia~~lgvs~d 170 (205)
..|.+|+|+.+|+|.+|+|+..||....+.++..+ +|+.+|..++
T Consensus 3 k~Ti~dIA~~aGVS~sTVSraLn~~~~Vs~~tr~rV~~~a~~lgY~pn 50 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPN 50 (349)
T ss_dssp ------------------------------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 776999999988699999999679699999999999999999789858
No 190
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=80.47 E-value=2.7 Score=20.27 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=29.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 99999999972983899999977999999997414889
Q gi|254781218|r 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 (205)
Q Consensus 115 G~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~ 152 (205)
-.+|-.++. .|+|..+.|+.+|+|.+|+.+|.+....
T Consensus 165 v~~I~~l~~-~G~s~~~IA~~l~is~~Tv~R~l~~~Gl 201 (209)
T 2r0q_C 165 YHRVVEMLE-EGQAISKIAKEVNITRQTVYRIKHDNGL 201 (209)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHTTCC-
T ss_pred HHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 999999998-7599999999989699999999997799
No 191
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=80.02 E-value=0.29 Score=26.32 Aligned_cols=44 Identities=16% Similarity=-0.048 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH---HHHHHHHHCCC
Q ss_conf 599889999984899999998877998889999---99999982899
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRY---ALYLRNEYEIS 86 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~---l~~la~~~~vs 86 (205)
...|-+++|+.+|||.+|||++=||....+-++ ...+++.++-.
T Consensus 5 ~k~Ti~diA~~aGVS~aTVSr~Ln~~~~Vs~~tr~rV~~aae~lgY~ 51 (333)
T 3jvd_A 5 AKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYV 51 (333)
T ss_dssp -----------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99879999999897999999996897999999999999999995997
No 192
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=79.96 E-value=2.3 Score=20.77 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=22.6
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 972983899999977999999997414
Q gi|254781218|r 123 KDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 123 ~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
-+.|.+..++|..+||+.+++.+|-+.
T Consensus 35 ~e~G~s~~~vAre~gi~~stl~~W~k~ 61 (87)
T 2elh_A 35 IHDGESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp HHHTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 987999999999979799899999999
No 193
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=79.95 E-value=2.8 Score=20.16 Aligned_cols=108 Identities=14% Similarity=0.013 Sum_probs=61.5
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHC------CC--CCC---CHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 9998599889999984899999998877------99--888---999999999982899999614532210000232134
Q gi|254781218|r 39 IRKANNKTQKEMAIGANQLESAVNLFEN------GM--CST---SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 (205)
Q Consensus 39 lR~~~gltQ~elA~~~gis~~~is~~E~------G~--~~p---si~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~ 107 (205)
.......|-+|+|...+++...+++.-+ +. ..+ +-+++.++|..|+++.+....-...-....+..-..
T Consensus 64 R~~~~prtl~eia~~~~~~~k~i~~~~k~i~~~l~~~~~~~~~~~~~~i~rf~~~l~l~~~~~~~a~~i~~~~~~~~~~~ 143 (200)
T 1ais_B 64 RLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTS 143 (200)
T ss_dssp HHHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88589967999999984029999999999999963235668899899999998562798999999999999998713436
Q ss_pred HHHHHHH--HH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 5546777--99-999999972983899999977999999997
Q gi|254781218|r 108 RLDPYAI--GA-RLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 108 ~~d~~~i--G~-rLk~lR~~~glsq~elA~~lgis~~tis~~ 146 (205)
...|..+ |. -+-......+++|.++|+.+|++..|+.+.
T Consensus 144 gr~P~siaaa~iy~a~~~~~~~~t~~~Ia~~~~vs~~TI~k~ 185 (200)
T 1ais_B 144 GKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNR 185 (200)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999089999999999998589989999998969889889999
No 194
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=79.80 E-value=2.2 Score=20.85 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=23.3
Q ss_pred HHHHHHHC------CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985------998899999848999999988
Q gi|254781218|r 36 IKDIRKAN------NKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~------gltQ~elA~~~gis~~~is~~ 64 (205)
|+.++... .+||.+||+.++++++++|+.
T Consensus 13 Lk~L~~~~~~~~~~~ls~~eLa~~l~is~~tvsr~ 47 (230)
T 3cta_A 13 IKKIKEAAEASNRAYLTSSKLADMLGISQQSASRI 47 (230)
T ss_dssp HHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999736415799858999999988788899999
No 195
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=79.63 E-value=2.1 Score=21.02 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999729838999999779999999974
Q gi|254781218|r 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~E 147 (205)
.-|..+.+.-++++.|+|+.+|++++|+++.-
T Consensus 156 ~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~l 187 (244)
T 2wte_A 156 KLLNVLYETKGTGITELAKMLDKSEKTLINKI 187 (244)
T ss_dssp HHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999997799899999999797988999999
No 196
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=78.91 E-value=0.33 Score=25.97 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=21.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH---HHHHCCCH
Q ss_conf 83899999977999999997414889998999999---99828999
Q gi|254781218|r 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI---KQVTKKHL 169 (205)
Q Consensus 127 lsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kI---a~~lgvs~ 169 (205)
.|.+|.|+..|+|..|+|+..||....+.++..+| |+.||..+
T Consensus 6 ~Ti~DIA~~aGVS~~TVSraLn~~~~vs~~tr~rV~~~a~~lgY~p 51 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRP 51 (332)
T ss_dssp ----------------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 7699999997979999999968969999999999999999958976
No 197
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H 1ku2_A 3lev_A* 3les_A*
Probab=78.90 E-value=3.1 Score=19.96 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=5.9
Q ss_pred CCHHHHHHHHCCC
Q ss_conf 8389999997799
Q gi|254781218|r 127 MSQIEFGKLLGMP 139 (205)
Q Consensus 127 lsq~elA~~lgis 139 (205)
-|..++|+.+|++
T Consensus 286 pt~eeiA~~l~~~ 298 (423)
T 2a6h_F 286 PTYEEIAEAMGPG 298 (423)
T ss_dssp CCHHHHHHHHCTT
T ss_pred CCHHHHHHHHCCC
T ss_conf 5079999996785
No 198
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=78.82 E-value=3.1 Score=19.94 Aligned_cols=83 Identities=13% Similarity=-0.034 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 59988999998489999999887799888999999999982899999614532210000232134554677799999999
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~~iG~rLk~lR 122 (205)
..++.++||+.+|+|+.++++.= +.+++++-..+.. ..+ ...+.+.
T Consensus 22 ~~~~l~~lA~~~~~S~~~l~r~f---------------k~~g~t~~~yi~~------------------~Rl-~~A~~lL 67 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKL---------------REEETSYSQLLTE------------------CRM-QRALQLI 67 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHH---------------HHTTCCHHHHHHH------------------HHH-HHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH---------------HHCCCCHHHHHHH------------------HHH-HHHHHHH
T ss_conf 99999999999893999999999---------------9839999999999------------------999-9999986
Q ss_pred HHCCCCHHHHHHHHCCC-HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 97298389999997799-9999997414889998999999998289999952
Q gi|254781218|r 123 KDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 (205)
Q Consensus 123 ~~~glsq~elA~~lgis-~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~ 173 (205)
..-+++..++|..+|.+ .+.++ ....+.+|++|..+-
T Consensus 68 ~~~~~~i~~IA~~~Gf~~~s~f~--------------r~Fk~~~G~tP~~yR 105 (120)
T 3mkl_A 68 VIHGFSIKRVAVSCGYHSVSYFI--------------YVFRNYYGMTPTEYQ 105 (120)
T ss_dssp TSTTCCHHHHHHHTTCSCHHHHH--------------HHHHHHHSSCHHHHH
T ss_pred HCCCCCHHHHHHHHCCCCHHHHH--------------HHHHHHHCCCHHHHH
T ss_conf 05658399999997899889999--------------999999990999999
No 199
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=78.61 E-value=1.5 Score=21.89 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH-CCCCCC
Q ss_conf 59988999998489999999887-799888
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFE-NGMCST 71 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E-~G~~~p 71 (205)
.-+|-.+||+.+|+|.++|-.|| .|.-.|
T Consensus 15 m~ytIgevA~~~gvs~~tLRyYE~~GLl~p 44 (148)
T 3gpv_A 15 MYYTIGQVAKMQHLTISQIRYYDKQGLFPF 44 (148)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHHTTCCTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 776599999998959999999998799184
No 200
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=78.58 E-value=2 Score=21.06 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=17.2
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+...-++|+.+||..+|+++++++++
T Consensus 48 L~~l~~~~~~t~~~La~~l~~~~~~vs~~ 76 (150)
T 2rdp_A 48 LQWLLEEGDLTVGELSNKMYLACSTTTDL 76 (150)
T ss_dssp HHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999779959999999989688789999
No 201
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=78.04 E-value=2.8 Score=20.23 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 9999997298389999997799999999741
Q gi|254781218|r 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 118 Lk~lR~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
.--++--.|+|..|.|+.+|++..+++++-.
T Consensus 116 ~~~~~~~~g~s~~EIA~~lgis~~~V~~~~~ 146 (164)
T 3mzy_A 116 EVLTYLIRGYSYREIATILSKNLKSIDNTIQ 146 (164)
T ss_dssp HHHHHHTTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9987656238999999998919999999999
No 202
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=77.41 E-value=2.1 Score=20.99 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHH-CCCCCCC
Q ss_conf 988999998489999999887-7998889
Q gi|254781218|r 45 KTQKEMAIGANQLESAVNLFE-NGMCSTS 72 (205)
Q Consensus 45 ltQ~elA~~~gis~~~is~~E-~G~~~ps 72 (205)
|+-.|||+..|+|..+|-.|| .|...|.
T Consensus 1 M~Ige~Ak~~gvs~~tlRyYe~~GLl~p~ 29 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEKGLVTPP 29 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTTCSCCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 97899999989199999999997896987
No 203
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=76.99 E-value=1.9 Score=21.27 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=21.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHH-CCCCCC
Q ss_conf 988999998489999999887-799888
Q gi|254781218|r 45 KTQKEMAIGANQLESAVNLFE-NGMCST 71 (205)
Q Consensus 45 ltQ~elA~~~gis~~~is~~E-~G~~~p 71 (205)
+|-.++|+.+|++.++|-.|| .|.-.|
T Consensus 2 ytI~e~a~~~gvs~~tLR~Ye~~GLl~p 29 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDDIGLLVP 29 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHTSSCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 5089999998959999999832589998
No 204
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=76.85 E-value=0.41 Score=25.38 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=30.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH---HHHHHCCCHHH
Q ss_conf 389999997799999999741488999899999---99982899999
Q gi|254781218|r 128 SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK---IKQVTKKHLDW 171 (205)
Q Consensus 128 sq~elA~~lgis~~tis~~E~g~~~Ps~~~l~k---Ia~~lgvs~d~ 171 (205)
|.+|+|+.+|+|..|+|+..||....+.++.++ +++.+|-.++.
T Consensus 4 tikdIA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~ 50 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNNTGYVSEDAREKIQKVVDELNYTPNA 50 (330)
T ss_dssp -----------------------------------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 89999999896999999996897999999999999999995898798
No 205
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=76.74 E-value=3.5 Score=19.57 Aligned_cols=36 Identities=8% Similarity=-0.016 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 599889999984899999998877998889999999
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~ 78 (205)
..++.++||..+|+|+.+++++=+.....++...+.
T Consensus 18 ~~~~l~~la~~~~~s~~~~~r~f~~~~g~~~~~~i~ 53 (292)
T 1d5y_A 18 QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIR 53 (292)
T ss_dssp SSCCCHHHHTTTSSCHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999999998939999999999998909999999
No 206
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=76.23 E-value=2.9 Score=20.11 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 98389999997799999999741
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E~ 148 (205)
.+|..|.|+.+|+|+..++++++
T Consensus 30 ~~tl~eIa~~lgiS~erVrqi~~ 52 (73)
T 1ku3_A 30 EHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 87899999998969999999999
No 207
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=76.03 E-value=0.38 Score=25.57 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 998899999848999999988779988899999999998289999
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d 88 (205)
-++|..+|+.+|++.+.||+|-.+.. |...+++.+- .|+|.-|
T Consensus 23 ~~gq~~~Ak~~G~~eS~ISRwk~~~~-~~~smllAvL-E~gv~dd 65 (97)
T 1xwr_A 23 MLGTEKTAEAVGVDKSQISRWKRDWI-PKFSMLLAVL-EWGVVDD 65 (97)
T ss_dssp HHCHHHHHHHHTCCTTTHHHHHHHHH-HHHHHHHHHH-HHCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHH-HHCCCCH
T ss_conf 98202079984987988633222079-9999999999-9701554
No 208
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=76.02 E-value=3.7 Score=19.45 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=42.9
Q ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHH
Q ss_conf 9999999982899999614532210000232134554677799999999972983899999977-99999999
Q gi|254781218|r 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSN 145 (205)
Q Consensus 74 ~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lg-is~~tis~ 145 (205)
+.+-.+|++|+|+.+.|.+.. ..+....+..++--| +|+..++|..+.|..+| -+++|+..
T Consensus 5 ~I~~~Va~~~~v~~~~i~s~~---------R~~~i~~aR~iamyL--~r~~t~~sl~~IG~~fg~RdHsTV~h 66 (94)
T 1j1v_A 5 NIQKTVAEYYKIKVADLLSKR---------RSRSVARPRQMAMAL--AKELTNHSLPEIGDAFGGRDHTTVLH 66 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHSCC---------CCHHHHHHHHHHHHH--HHHHSCCCHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHCCC---------CCHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHCCCCCCHHHH
T ss_conf 999999989299899986678---------874888999999999--99882899999999968998409999
No 209
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=76.01 E-value=2.9 Score=20.06 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
Q ss_conf 6543331000156689999999999999999-85998899999848999999988779988899999
Q gi|254781218|r 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRK-ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 (205)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~iG~rik~lR~-~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l 76 (205)
|..+++.--.+++. .+.|++-|..-.. ...+|..+||+.+|+|+++|.|+=+-...-...-+
T Consensus 9 l~~I~~~~~~Lt~~----E~~Ia~yil~n~~~v~~~si~elA~~~~vS~aTI~Rf~kklGf~gf~ef 71 (111)
T 2o3f_A 9 LAIIQSMXHXLPPS----ERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDL 71 (111)
T ss_dssp HHHHHHHGGGSCHH----HHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHCCCCHH----HHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 99999863417999----9999999995924764378999998979898799999999277989999
No 210
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=75.88 E-value=2.5 Score=20.55 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999998599889999984899999998
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
|+.|.+.-.+|..++|+++|+|++++.+
T Consensus 13 L~~L~~d~R~s~~~iA~~lglS~~tv~~ 40 (151)
T 2cyy_A 13 IKILQNDGKAPLREISKITGLAESTIHE 40 (151)
T ss_dssp HHHHHHCTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999984899999999998919999999
No 211
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=75.76 E-value=3 Score=20.05 Aligned_cols=29 Identities=21% Similarity=0.029 Sum_probs=20.5
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
|..+.+..++|+.+||..++++++++|+.
T Consensus 50 L~~l~~~~~~t~~eLa~~l~i~~~tvs~~ 78 (154)
T 2eth_A 50 FLYVALFGPKKMKEIAEFLSTTKSNVTNV 78 (154)
T ss_dssp HHHHHHHCCBCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999869949999999989798899999
No 212
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=75.62 E-value=3.1 Score=19.93 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=23.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..++..-++|+.++|..++++++++|+.
T Consensus 37 L~~l~~~~~~t~~~la~~l~i~~~tvs~~ 65 (142)
T 3bdd_A 37 LQTLLKDAPLHQLALQERLQIDRAAVTRH 65 (142)
T ss_dssp HHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998779989999999989698689999
No 213
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=75.61 E-value=2.5 Score=20.48 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=20.9
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+...-++|+.++|+.+++++++++++
T Consensus 46 L~~L~~~~~~t~~~la~~l~i~~~~vsr~ 74 (148)
T 3nrv_A 46 ISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
T ss_dssp HHHHHHSSSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999779979999999989699899999
No 214
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexibility; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=75.33 E-value=2.6 Score=20.45 Aligned_cols=25 Identities=16% Similarity=-0.016 Sum_probs=13.1
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999859988999998489999999887
Q gi|254781218|r 39 IRKANNKTQKEMAIGANQLESAVNLFE 65 (205)
Q Consensus 39 lR~~~gltQ~elA~~~gis~~~is~~E 65 (205)
.-+..| |.+.|..+||++++||+-=
T Consensus 10 yv~~~G--Q~k~A~~lGV~q~AIsKAl 34 (66)
T 2ovg_A 10 YAMRFG--QTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp HHHHHC--HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHC--HHHHHHHCCCCHHHHHHHH
T ss_conf 999978--5999999097689999999
No 215
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=75.00 E-value=3.3 Score=19.76 Aligned_cols=29 Identities=21% Similarity=0.022 Sum_probs=19.5
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+...-++||.++|+.++++++++++.
T Consensus 40 L~~l~~~~~~t~~ela~~~~~~~~~vs~~ 68 (138)
T 1jgs_A 40 LCSIRCAACITPVELKKVLSVDLGALTRM 68 (138)
T ss_dssp HHHHHHHSSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998779989999999989788799999
No 216
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=74.83 E-value=2.9 Score=20.12 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=24.9
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHC-CCCCCC
Q ss_conf 8599889999984899999998877-998889
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFEN-GMCSTS 72 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~-G~~~ps 72 (205)
...+|-.+||+.+|+|+.+|-.||. |.-.|+
T Consensus 2 ~~~Y~Igeva~~~gvs~~TLRyYe~~GLl~P~ 33 (146)
T 3hh0_A 2 SLAWLISEFASVGDVTVRALRYYDKINLLKPS 33 (146)
T ss_dssp -CCBCHHHHHHHHTCCHHHHHHHHHTTSSCCS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 98773999999989598899999987998977
No 217
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=74.60 E-value=1.7 Score=21.55 Aligned_cols=29 Identities=14% Similarity=0.485 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCH
Q ss_conf 983899999977999999997414889998
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E~g~~~Ps~ 155 (205)
.+++.++|+.+|+|..|+..|.. .-.|-+
T Consensus 2 ~vNk~qlA~~fgVS~~TI~~W~~-~GmPvi 30 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQE-QGMPVL 30 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTT-TTCCCS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH-CCCCEE
T ss_conf 55899999997988899999998-799977
No 218
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV}
Probab=74.58 E-value=2.1 Score=21.02 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9838999999779999999974
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E 147 (205)
.+||+++|+.+|+++.++++.-
T Consensus 187 ~lt~~~lA~~lg~sr~tv~R~l 208 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVL 208 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 7899999999799899999999
No 219
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=74.41 E-value=3.1 Score=19.94 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=18.1
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985998899999848999999988
Q gi|254781218|r 37 KDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 37 k~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
..+....++|+.+||..++++++++++.
T Consensus 36 ~~i~~~~~~t~~eLa~~~~~~~~~vs~~ 63 (138)
T 3bpv_A 36 LRIHREPGIKQDELATFFHVDKGTIART 63 (138)
T ss_dssp HHHHHSTTCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9998589979999999989798799999
No 220
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=74.36 E-value=3.5 Score=19.61 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=17.5
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
|..+....++|+.++|+.++++++++++.
T Consensus 37 L~~l~~~~~~t~~~la~~l~~~~~~vs~~ 65 (145)
T 3g3z_A 37 LYTLATEGSRTQKHIGEKWSLPKQTVSGV 65 (145)
T ss_dssp HHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999879949999999989698899999
No 221
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=73.95 E-value=2.3 Score=20.75 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 2983899999977999999997
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~ 146 (205)
..+||.++|..+|+++.++++.
T Consensus 162 ~~lt~~~lA~~lg~sr~tvsr~ 183 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTA 183 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHH
T ss_conf 8846999999979989999999
No 222
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=73.86 E-value=2.8 Score=20.25 Aligned_cols=22 Identities=18% Similarity=-0.016 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 5998899999848999999988
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~ 64 (205)
..+|+.++|+.+|+++++|++.
T Consensus 35 ~~~t~~eia~~~~~~~~tvs~~ 56 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENS 56 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 8989999999989788589999
No 223
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=73.76 E-value=2.9 Score=20.10 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=17.2
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999998599889999984899999998
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
|+.+.+.-.+|..++|+++|+|++++.+
T Consensus 15 l~~L~~d~R~s~~eia~~lgls~~tv~~ 42 (151)
T 2dbb_A 15 VKILSENSRLTYRELADILNTTRQRIAR 42 (151)
T ss_dssp HHHHHHCTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999885999999999998969999999
No 224
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=73.68 E-value=3 Score=19.99 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=20.1
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999998599889999984899999998
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
|+.|++.-..|..++|+++|+|++++.+
T Consensus 13 l~~L~~n~R~s~~~ia~~~gls~~tv~~ 40 (150)
T 2w25_A 13 VRELAADGRATLSELATRAGLSVSAVQS 40 (150)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999983899999999998929899999
No 225
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6}
Probab=73.66 E-value=2.5 Score=20.50 Aligned_cols=27 Identities=7% Similarity=-0.052 Sum_probs=16.0
Q ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHC
Q ss_conf 99859988999998489-9999998877
Q gi|254781218|r 40 RKANNKTQKEMAIGANQ-LESAVNLFEN 66 (205)
Q Consensus 40 R~~~gltQ~elA~~~gi-s~~~is~~E~ 66 (205)
+-..|.|..+++...|| +.+++.+|-+
T Consensus 27 ~l~~G~sl~~i~~~~gvps~sT~~~Wl~ 54 (143)
T 3hef_A 27 LLSSGESLLKVCKRPGMPDKSTVFRWLA 54 (143)
T ss_dssp HHHTTCCHHHHHTSTTCCCHHHHHHHTT
T ss_pred HHHCCCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 9988985999987079996899999997
No 226
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=73.19 E-value=4 Score=19.27 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=21.3
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+...-++|+.++|..++++++++++.
T Consensus 39 L~~i~~~~~~t~~ela~~~~~~~~~vs~~ 67 (145)
T 2a61_A 39 LQKIYFEGPKRPGELSVLLGVAKSTVTGL 67 (145)
T ss_dssp HHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998779989999999989798789999
No 227
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=73.14 E-value=4 Score=19.25 Aligned_cols=29 Identities=10% Similarity=-0.101 Sum_probs=17.1
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+...-++|+.++|+.+|+++++++++
T Consensus 26 ~~~L~~~~~~t~~eia~~~~~~~~~v~~~ 54 (109)
T 1sfx_A 26 YSLLLERGGMRVSEIARELDLSARFVRDR 54 (109)
T ss_dssp HHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 99998048887999999975670189999
No 228
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=72.61 E-value=3.3 Score=19.74 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=15.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999998599889999984899999998
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
|+.|++.-.+|..++|+++|+|++++.+
T Consensus 16 l~~L~~d~R~s~~eiA~~~gls~~tv~~ 43 (162)
T 2p5v_A 16 LQVLQENGRLTNVELSERVALSPSPCLR 43 (162)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999983799999999998929999999
No 229
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=72.44 E-value=3.9 Score=19.29 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=29.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 0015668999999999999999985998899999848999999988
Q gi|254781218|r 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 19 ~~~~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
..++..+++..+ ..=++.+|+ .-+|..|||+.+|+|+++|+++
T Consensus 11 ~~~P~~ir~~N~--~~il~~l~~-gpiSR~eLa~~tgLS~~Tvs~i 53 (380)
T 2hoe_A 11 HHMPKSVRAENI--SRILKRIMK-SPVSRVELAEELGLTKTTVGEI 53 (380)
T ss_dssp -----------C--CCSHHHHHH-SCBCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHH--HHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 558799999999--999999980-9959999998889599999999
No 230
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ...
Probab=72.43 E-value=2.5 Score=20.50 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 983899999977999999997
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~ 146 (205)
.+||.++|..+|+++.++++.
T Consensus 217 ~lt~~~LA~~lG~sr~tvsR~ 237 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRI 237 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 689999999979989999999
No 231
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=72.32 E-value=4.6 Score=18.89 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=25.2
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 999999729838999999779999999974148
Q gi|254781218|r 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 118 Lk~lR~~~glsq~elA~~lgis~~tis~~E~g~ 150 (205)
+.+++ ..|+|..+.|+.+|++++|+.+|.+..
T Consensus 151 i~~l~-~~g~s~~~Ia~~l~vs~sTv~R~l~~~ 182 (183)
T 1gdt_A 151 VLNMW-QQGLGASHISKTMNIARSTVYKVINES 182 (183)
T ss_dssp HHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 99999-869999999999893999999998730
No 232
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=72.16 E-value=3.5 Score=19.64 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=17.2
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999998599889999984899999998
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
|+.|++.-.+|..++|+++|+|++++.+
T Consensus 23 L~~Lq~d~R~s~~eIA~~lgls~~tv~~ 50 (171)
T 2ia0_A 23 LRLLKKDARLTISELSEQLKKPESTIHF 50 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999984899999999998909999999
No 233
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=72.09 E-value=3.5 Score=19.62 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=19.9
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999998599889999984899999998
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
|+.|.+.--++..++|+++|+|++++.+
T Consensus 33 L~~L~~d~R~s~~~iA~~lglS~~tV~~ 60 (171)
T 2e1c_A 33 IKILQNDGKAPLREISKITGLAESTIHE 60 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999983899999999998919999999
No 234
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=72.00 E-value=2.4 Score=20.61 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=21.6
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+....++|+.+||..+|++++++|+.
T Consensus 43 L~~l~~~~~~t~~~La~~l~i~~~~vsr~ 71 (142)
T 3ech_A 43 LKLIDEQRGLNLQDLGRQMCRDKALITRK 71 (142)
T ss_dssp HHHHHHTTTCCHHHHHHHHC---CHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999779989999999989698799999
No 235
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=71.95 E-value=4.2 Score=19.12 Aligned_cols=29 Identities=3% Similarity=-0.003 Sum_probs=21.3
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+...-+.|+.++|..++++++++++.
T Consensus 44 L~~l~~~~~~t~~eLa~~~~~~~~~vs~~ 72 (140)
T 2nnn_A 44 LVRLGETGPCPQNQLGRLTAMDAATIKGV 72 (140)
T ss_dssp HHHHHHHSSBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 99999879909999999878573529999
No 236
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus}
Probab=71.95 E-value=2.1 Score=20.93 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9838999999779999999974
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E 147 (205)
.+||.++|+.+|+++.++++..
T Consensus 139 ~lt~~~lA~~lg~sr~tvsR~l 160 (195)
T 2zdb_A 139 TVSHEEIADATASIRESVSKVL 160 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 8879999988799799999999
No 237
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=71.91 E-value=4.7 Score=18.83 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=14.2
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998599889999984899999998
Q gi|254781218|r 37 KDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 37 k~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
=.+|-..|+|.+++|+.+|+|+++|..
T Consensus 31 i~L~~~~~ls~~EIA~~lgis~~~V~~ 57 (113)
T 1s7o_A 31 IELYYADDYSLAEIADEFGVSRQAVYD 57 (113)
T ss_dssp HHHHHHTCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999731299999998979999999
No 238
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=71.84 E-value=4.7 Score=18.82 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=22.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 999999997298389999997799999999741
Q gi|254781218|r 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
..+=.++--.|+|..|.|+.+|++.+++.....
T Consensus 43 r~vi~l~~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 43 RAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999399999999998969999999999
No 239
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=71.76 E-value=2.7 Score=20.32 Aligned_cols=30 Identities=3% Similarity=0.027 Sum_probs=23.3
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999859988999998489999999887
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLFE 65 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~E 65 (205)
+..+...-++||.+||..++++++++++.=
T Consensus 53 L~~l~~~~~~~~~eLa~~l~~~~~tvs~~v 82 (153)
T 2pex_A 53 MLVLWETDERSVSEIGERLYLDSATLTPLL 82 (153)
T ss_dssp HHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999984799899999999896886899999
No 240
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2
Probab=71.66 E-value=2.5 Score=20.48 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH----C------CC---CCCCHHHHHHHHHH
Q ss_conf 29838999999779999999974----1------48---89998999999998
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNYE----Q------GR---TIPEIKPARKIKQV 164 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~E----~------g~---~~Ps~~~l~kIa~~ 164 (205)
..+||+++|..+|+++.++++.. . .+ ...+.+.|.++|+.
T Consensus 179 ~~~t~~~lA~~~G~sr~tvsr~l~~l~~~g~I~~~~~~i~I~d~~~L~~~a~~ 231 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQKTARS 231 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEECCHHHHHHHHHC
T ss_conf 45059999988798999999999999988979970999998689999999856
No 241
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=71.47 E-value=4.8 Score=18.77 Aligned_cols=36 Identities=6% Similarity=-0.239 Sum_probs=24.9
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH
Q ss_conf 859988999998489999999887799888999999
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~ 77 (205)
...++.++||+.+|+|+.++++.=+-....++...+
T Consensus 16 ~~~~~~~~la~~~~~S~~~l~r~fk~~~g~s~~~yi 51 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRSRGYSPMAFA 51 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 899999999999891999999999999891968999
No 242
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=71.40 E-value=3.8 Score=19.36 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=22.2
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999998599889999984899999998
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
|+.|.+.-.++..++|+.+|+|++++.+
T Consensus 11 l~~L~~n~R~s~~eiA~~~g~s~~tv~~ 38 (144)
T 2cfx_A 11 IEELKKDSRLSMRELGRKIKLSPPSVTE 38 (144)
T ss_dssp HHHHHHCSCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999983899999999998929899999
No 243
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=71.38 E-value=3.4 Score=19.66 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=17.8
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985998899999848999999988
Q gi|254781218|r 37 KDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 37 k~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
..+...-++|+.+||+.++++++++++.
T Consensus 44 ~~l~~~~~~t~~~La~~l~i~~~~vs~~ 71 (143)
T 3oop_A 44 EGIEANEPISQKEIALWTKKDTPTVNRI 71 (143)
T ss_dssp HHHHHHSSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9998689979999999989699799999
No 244
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=71.09 E-value=2.4 Score=20.60 Aligned_cols=28 Identities=4% Similarity=0.030 Sum_probs=22.3
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999998599889999984899999998
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
|+.|++.-.+|..++|+++|+|++++.+
T Consensus 9 L~~L~~d~R~s~~eiA~~lglS~~tv~~ 36 (162)
T 3i4p_A 9 LRILQEDSTLAVADLAKKVGLSTTPCWR 36 (162)
T ss_dssp HHHHTTCSCSCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999984899999999998929999999
No 245
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=70.86 E-value=3.4 Score=19.68 Aligned_cols=29 Identities=3% Similarity=0.050 Sum_probs=22.9
Q ss_pred HHHHHHHCC-CCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999859-98899999848999999988
Q gi|254781218|r 36 IKDIRKANN-KTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~g-ltQ~elA~~~gis~~~is~~ 64 (205)
|..++...+ +|-.+||+.+|||+.+|.+-
T Consensus 27 l~~L~~~~~~vs~~eLa~~l~vS~~TIrrd 56 (187)
T 1j5y_A 27 VRILERSKEPVSGAQLAEELSVSRQVIVQD 56 (187)
T ss_dssp HHHHHHCSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998599676999999979899999999
No 246
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=70.70 E-value=4.7 Score=18.83 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 99999999999998599889999984899999998877998889999999999828999996145322100002321345
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~ 108 (205)
..++=.+|-++ -..|+++.++|..++|++++|++|=+ ...+ .|...+.+.- -.....
T Consensus 19 s~~~R~rIv~l-~~~G~s~~~Iar~l~Vs~~~V~kil~-----------r~~e----------tG~i~p~~~g-G~rpr~ 75 (128)
T 1pdn_C 19 PNNIRLKIVEM-AADGIRPCVISRQLRVSHGCVSKILN-----------RYQE----------TGSIRPGVIG-GSKPRI 75 (128)
T ss_dssp CHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHH-----------HHHH----------HCCSSCCCCS-CCCCCS
T ss_pred CHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHH-----------HHHH----------CCCCCCCCCC-CCCCCC
T ss_conf 89999999999-98699999999988968999999999-----------9873----------5987778889-999987
Q ss_pred HHHHHHHHHHHHH-HHHCCCCHHHHHHHH---CC-------CHHHHHHHHCCC
Q ss_conf 5467779999999-997298389999997---79-------999999974148
Q gi|254781218|r 109 LDPYAIGARLKSI-RKDKGMSQIEFGKLL---GM-------PNSTLSNYEQGR 150 (205)
Q Consensus 109 ~d~~~iG~rLk~l-R~~~glsq~elA~~l---gi-------s~~tis~~E~g~ 150 (205)
..+... .+|.++ +..-.++..|+.+.+ |+ |.++|+++.+++
T Consensus 76 ~t~~~~-~~I~~~~~~nP~i~~~Eir~~L~~egvc~~~~~pSvSsI~RiLR~~ 127 (128)
T 1pdn_C 76 ATPEIE-NRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGR 127 (128)
T ss_dssp SCSTHH-HHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC---
T ss_pred CCHHHH-HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 999999-9999999718853099999999875787678897799999998149
No 247
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=70.50 E-value=4.5 Score=18.94 Aligned_cols=29 Identities=14% Similarity=-0.016 Sum_probs=21.3
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
|..+...-++|+.+||..++++++++|+.
T Consensus 55 L~~l~~~~~~t~~~La~~l~i~~~~vs~~ 83 (162)
T 2fa5_A 55 ITILALYPGSSASEVSDRTAMDKVAVSRA 83 (162)
T ss_dssp HHHHHHSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998679989999999978787159999
No 248
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=70.39 E-value=5 Score=18.62 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=62.7
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCC---------CCCCCHHHHHHHHHHHCCCHHHHHCCCCC-----CCCCCCCCC
Q ss_conf 9985998899999848999999988779---------98889999999999828999996145322-----100002321
Q gi|254781218|r 40 RKANNKTQKEMAIGANQLESAVNLFENG---------MCSTSIRYALYLRNEYEISFDWIYDGEVI-----DRRYEDVTN 105 (205)
Q Consensus 40 R~~~gltQ~elA~~~gis~~~is~~E~G---------~~~psi~~l~~la~~~~vs~d~Ll~ge~~-----~~~~~~~~~ 105 (205)
......|-.|+|...+++...+++.++- ...-+-+++.++|+.|+++.+..-.-... +.......+
T Consensus 61 ~~~~prtl~eia~~~~~~~k~l~k~~k~l~~~L~~~~~~~~p~~~i~r~~~~L~l~~~~~~~~~~i~~~~~~~~l~~gr~ 140 (207)
T 1c9b_A 61 QEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRS 140 (207)
T ss_dssp HTTCCCCHHHHHHTSSSCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCC
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 72898759999999788799999999999999864126787477889999870561888899999999999986764998
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 345546777999999999729838999999779999999974
Q gi|254781218|r 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 106 ~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E 147 (205)
...+..-+ --+-......+.++.++|+..|++..|+.+.-
T Consensus 141 P~siAaaa--iyla~~~~~~~~t~~~Ia~~~~vs~~TI~~~y 180 (207)
T 1c9b_A 141 PISVAAAA--IYMASQASAEKRTQKEIGDIAGVADVTIRQSY 180 (207)
T ss_dssp HHHHHHHH--HHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHH--HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 14499999--99999997899999999999798899999999
No 249
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=70.31 E-value=3 Score=20.03 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9838999999779999999974
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E 147 (205)
.+||.++|+.+|+++.++++..
T Consensus 193 ~lt~~~LA~~lGisr~tvsR~L 214 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLL 214 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHH
T ss_conf 5259999888799999999999
No 250
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=70.28 E-value=4 Score=19.22 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=21.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999998599889999984899999998
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
|+.+.+.-.+|..++|+.+|+|++++.+
T Consensus 10 l~~L~~d~r~s~~~ia~~~gls~~tv~~ 37 (141)
T 1i1g_A 10 LEILEKDARTPFTEIAKKLGISETAVRK 37 (141)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999984898999999998929999999
No 251
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=70.27 E-value=2.5 Score=20.45 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=22.8
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+....|+||.+||..++++++++++.
T Consensus 46 L~~l~~~~~~t~~eLa~~~~i~~~tit~~ 74 (147)
T 1z91_A 46 LLLLWEHETLTVKKMGEQLYLDSGTLTPM 74 (147)
T ss_dssp HHHHHHHSEEEHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999779949999999979788789999
No 252
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor A3}
Probab=70.16 E-value=3.6 Score=19.53 Aligned_cols=29 Identities=3% Similarity=0.150 Sum_probs=22.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHH-CCCCCCCH
Q ss_conf 988999998489999999887-79988899
Q gi|254781218|r 45 KTQKEMAIGANQLESAVNLFE-NGMCSTSI 73 (205)
Q Consensus 45 ltQ~elA~~~gis~~~is~~E-~G~~~psi 73 (205)
|.-.|||...|+|.++|-.|| .|.-.|+-
T Consensus 1 MrI~elA~~~Gvs~~tLR~Ye~~GLL~p~~ 30 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLREGLLPPGR 30 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHTSSCCC-
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCE
T ss_conf 958999999895999999999879979884
No 253
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=70.16 E-value=2.5 Score=20.51 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=18.1
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9999998599889999984899999998
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
|+.+++.-.+|..++|+++|+|++++.+
T Consensus 9 l~~L~~d~R~s~~eia~~lg~s~~tv~~ 36 (150)
T 2pn6_A 9 LKILQYNAKYSLDEIAREIRIPKATLSY 36 (150)
T ss_dssp HHHHTTCTTSCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999984899999999998939999999
No 254
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=70.11 E-value=5.1 Score=18.58 Aligned_cols=124 Identities=15% Similarity=0.213 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCC------CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 9999999999999859988999998489------9999998877998889999999999828999996145322100002
Q gi|254781218|r 29 WKDVGTRIKDIRKANNKTQKEMAIGANQ------LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 (205)
Q Consensus 29 ~~~iG~rik~lR~~~gltQ~elA~~~gi------s~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~ 102 (205)
.+.+..-++..|...|+||.+++..++. ++.+|+++|+=... .....++.-.+. .|+-..+........
T Consensus 6 le~f~~~fk~rRi~Lg~SQ~~V~~al~~~~~~~~sq~~i~~fe~~~ls--~kn~~kl~p~l~---~wl~~~~~~~~~~~~ 80 (151)
T 3d1n_I 6 IREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDIT--PKSAQKLKPVLE---KWLNEAELRNQEGQQ 80 (151)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSC--HHHHHHHHHHHH---HHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCC--HHHHHHHHHHHH---HHHHHHHHCCCCCCC
T ss_conf 999999999877771787866999986646765660214689997657--625988127899---989899852567877
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 32134554677799999999972983899999977999999997414889998999999998289999
Q gi|254781218|r 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 (205)
Q Consensus 103 ~~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d 170 (205)
.......+..-+.-|...-++..++. .+-.+-.-...|+......||+.+|++..
T Consensus 81 -----~~~~~~~~~~~~~rr~Rt~~~~~q~~--------~Le~~f~~~~~P~~~~~~~lA~~l~l~~~ 135 (151)
T 3d1n_I 81 -----NLMEFVGGEPSKKRKRRTSFTPQAIE--------ALNAYFEKNPLPTGQEITEMAKELNYDRE 135 (151)
T ss_dssp -----THHHHHCSSCCCCCCCCCCCCHHHHH--------HHHHHHHHCSSCCHHHHHHHHHHHTSCHH
T ss_pred -----CCCCCCCCCCCCCCCCCCCCCHHHHH--------HHHHHHHCCCCCCHHHHHHHHHHHCCCHH
T ss_conf -----74223588777889898757867999--------99999970699699999999999784988
No 255
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=69.47 E-value=5.3 Score=18.50 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=28.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 9999999972983899999977999999997414
Q gi|254781218|r 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
.-|..+....+..+.+.|+.+||++.|+.+..+-
T Consensus 44 ~~I~~aL~~~~GN~s~AAr~LGIsR~TLyrklkk 77 (81)
T 1umq_A 44 EHIQRIYEMCDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999997277999999979899999999997
No 256
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=69.20 E-value=3.3 Score=19.76 Aligned_cols=29 Identities=10% Similarity=-0.014 Sum_probs=22.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+....|+|+.+||..++++++++++.
T Consensus 58 L~~l~~~~~~t~~~La~~~~~~~~~vsr~ 86 (162)
T 3cjn_A 58 LAILSAKDGLPIGTLGIFAVVEQSTLSRA 86 (162)
T ss_dssp HHHHHHSCSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998479989999999989798899999
No 257
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=69.03 E-value=3.4 Score=19.71 Aligned_cols=28 Identities=7% Similarity=-0.097 Sum_probs=16.6
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985998899999848999999988
Q gi|254781218|r 37 KDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 37 k~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
..+...-++|+.+||..++++++++++.
T Consensus 48 ~~L~~~~~~t~~~La~~l~~~~~tvs~~ 75 (154)
T 2qww_A 48 NVIYSTPGISVADLTKRLIITGSSAAAN 75 (154)
T ss_dssp HHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999779989999999979787579999
No 258
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=68.76 E-value=2 Score=21.09 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=24.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCH
Q ss_conf 83899999977999999997414889998
Q gi|254781218|r 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 (205)
Q Consensus 127 lsq~elA~~lgis~~tis~~E~g~~~Ps~ 155 (205)
+...|+++.+|++++++.++.+....|..
T Consensus 11 lr~keV~~~~glsrstiy~~i~~G~FP~p 39 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSGDLPKA 39 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHHHCCCS
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 64999999989799999999987999998
No 259
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=68.40 E-value=3.5 Score=19.64 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 983899999977999999997
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~ 146 (205)
.+|+.++|..+|+++.++++.
T Consensus 175 ~lt~~~iA~~lg~sr~tvsR~ 195 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRV 195 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 769999998869989999999
No 260
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution; 1.70A {Pseudomonas fluorescens pf-5}
Probab=68.28 E-value=3.2 Score=19.83 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=17.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 8899999848999999988779988
Q gi|254781218|r 46 TQKEMAIGANQLESAVNLFENGMCS 70 (205)
Q Consensus 46 tQ~elA~~~gis~~~is~~E~G~~~ 70 (205)
||.+.|..+||++++||+--+-.++
T Consensus 15 ~Q~k~A~~lGV~Q~AIsKAlragR~ 39 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAGRS 39 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCE
T ss_conf 5889999919758999999975981
No 261
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=68.07 E-value=5.6 Score=18.32 Aligned_cols=31 Identities=16% Similarity=0.136 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999972983899999977999999997
Q gi|254781218|r 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~ 146 (205)
.-|+.+....+-.+.+.|+.+||++.|+.+-
T Consensus 61 ~~I~~aL~~~~gn~~~aA~~LGisR~tL~~k 91 (98)
T 1eto_A 61 PLLDMVMQYTLGNQTRAALMMGINRGTLRKK 91 (98)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999991998899999979899999999
No 262
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=67.71 E-value=3.6 Score=19.50 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHH----HHCCC---------CCCCHHHHHHHHHHH
Q ss_conf 298389999997799999999----74148---------899989999999982
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSN----YEQGR---------TIPEIKPARKIKQVT 165 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~----~E~g~---------~~Ps~~~l~kIa~~l 165 (205)
..+|+.++|+.+|+++.++++ ++..+ ..++.+.|..||+--
T Consensus 176 ~~lt~~~LA~~lgisr~tvsR~l~~L~~~giI~~~~~~i~I~d~~~L~~~a~~~ 229 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHLSEQT 229 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHCCC
T ss_conf 886899999897999999999999999889899649999987899999987575
No 263
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=67.40 E-value=3.8 Score=19.37 Aligned_cols=29 Identities=3% Similarity=0.098 Sum_probs=18.5
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
|..+...-++|+.+||..++++++++++.
T Consensus 46 L~~l~~~~~~t~~~La~~l~~~~~~is~~ 74 (152)
T 3bj6_A 46 LEGLSLTPGATAPQLGAALQMKRQYISRI 74 (152)
T ss_dssp HHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999879989999999989698799999
No 264
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=66.92 E-value=6 Score=18.18 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999729838999999779999999974
Q gi|254781218|r 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~E 147 (205)
..|.......+.++...|+.+||+++|+.+..
T Consensus 271 ~~I~~aL~~~~gn~~~aA~~LGisR~tLyrkl 302 (304)
T 1ojl_A 271 EVILAALEKTGGNKTEAARQLGITRKTLLAKL 302 (304)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999929989999999888999999986
No 265
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=66.75 E-value=2.8 Score=20.19 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=18.0
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 85998899999848999999988
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~ 64 (205)
..|+||.++|+.++++++++++.
T Consensus 45 ~~~~t~~ela~~l~~~~~tvs~~ 67 (139)
T 3eco_A 45 QDGLTQNDIAKALQRTGPTVSNL 67 (139)
T ss_dssp TTCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99969999999989688789999
No 266
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=66.72 E-value=3.5 Score=19.59 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 59988999998489999999887
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFE 65 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E 65 (205)
.++|+.+||..+|++++++|+.=
T Consensus 56 ~~~t~~eLa~~l~i~~stvs~~v 78 (189)
T 3nqo_A 56 EETTLNNIARKMGTSKQNINRLV 78 (189)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99099999999896886999999
No 267
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=66.64 E-value=4.8 Score=18.75 Aligned_cols=29 Identities=10% Similarity=-0.044 Sum_probs=21.8
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
|..+...-++++.++|..+|+++++++++
T Consensus 51 L~~l~~~~~~~~~eLa~~l~i~~~~vs~~ 79 (168)
T 2nyx_A 51 LVILSNHGPINLATLATLLGVQPSATGRM 79 (168)
T ss_dssp HHHHHHHCSEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999679969999999989698899999
No 268
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=66.49 E-value=5.1 Score=18.59 Aligned_cols=26 Identities=19% Similarity=0.035 Sum_probs=14.6
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998599889999984899999998
Q gi|254781218|r 38 DIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 38 ~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
.+|-..|+|..+.|..+|+|+++|..
T Consensus 35 ~l~~~e~ls~~EIA~~lgiS~~aV~~ 60 (113)
T 1xsv_A 35 ELFYLEDYSLSEIADTFNVSRQAVYD 60 (113)
T ss_dssp HHHHTSCCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99999199999999998969999999
No 269
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=66.14 E-value=4.5 Score=18.92 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=13.7
Q ss_pred HCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 8599889999984899999998
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~ 63 (205)
...+|..+||+.+|++++++|+
T Consensus 32 ~~~~~v~eLa~~l~is~s~vS~ 53 (114)
T 2oqg_A 32 RADQSASSLATRLPVSRQAIAK 53 (114)
T ss_dssp HSCBCHHHHHHHSSSCHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHH
T ss_conf 1992899999888889889999
No 270
>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=66.09 E-value=4.3 Score=19.08 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 2983899999977999999997
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~ 146 (205)
..+++.++|..+|+++.++++.
T Consensus 166 ~~lt~~~lA~~lg~sr~tvsr~ 187 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVL 187 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHH
T ss_pred ECCHHHHHHHHHCCCHHHHHHH
T ss_conf 0724999999979999999999
No 271
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=65.96 E-value=3.8 Score=19.41 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 99889999984899999998877
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLFEN 66 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~E~ 66 (205)
.+|+.++|+.+|||+..|..+|+
T Consensus 38 ~~Tl~eI~~~lgiSreRVRQie~ 60 (87)
T 1tty_A 38 PKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 65799999895988999999999
No 272
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=65.80 E-value=6.3 Score=18.04 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 5998899999848999999988
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~ 64 (205)
.++||.+||..++++++++++.
T Consensus 49 ~~~t~~~La~~l~i~~~~vs~~ 70 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVL 70 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9959999999989788589999
No 273
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=65.64 E-value=3.5 Score=19.62 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 2983899999977999999997
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~ 146 (205)
.-+|+.++|+.+|+++.++++.
T Consensus 177 l~~t~~~iA~~lgisr~tvsR~ 198 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLSRA 198 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 7889999998869989999999
No 274
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=65.58 E-value=5.9 Score=18.21 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 998899999848999999988
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~ 64 (205)
.+|+.+||..++++.+++++.
T Consensus 50 ~~t~~ela~~~~~~~~tvs~~ 70 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAAL 70 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 989999999989798799999
No 275
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=65.49 E-value=4.2 Score=19.10 Aligned_cols=26 Identities=0% Similarity=-0.107 Sum_probs=14.7
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998599889999984899999998
Q gi|254781218|r 38 DIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 38 ~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
.+...-++|+.++|+.+|++++++|+
T Consensus 24 ~L~~~~~~t~~eLa~~l~is~~~vs~ 49 (100)
T 1ub9_A 24 FLLPRRKAPFSQIQKVLDLTPGNLDS 49 (100)
T ss_dssp HHHHHSEEEHHHHHHHTTCCHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 98518998399999998919989999
No 276
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=65.07 E-value=4.1 Score=19.21 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=12.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 8389999997799999999741488
Q gi|254781218|r 127 MSQIEFGKLLGMPNSTLSNYEQGRT 151 (205)
Q Consensus 127 lsq~elA~~lgis~~tis~~E~g~~ 151 (205)
+|..|+|+.+|++.+++.+|-..+.
T Consensus 32 lt~~evA~~LGvs~~~V~~~i~~~~ 56 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLREGH 56 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 4899999996998899999998692
No 277
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=64.95 E-value=3.6 Score=19.56 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 983899999977999999997
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~ 146 (205)
.+||.++|+.+|+++.|+++.
T Consensus 178 ~~t~~~lA~~lg~sr~tv~r~ 198 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRI 198 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHH
T ss_conf 505999988869989999999
No 278
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395}
Probab=64.92 E-value=6.5 Score=17.94 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 98389999997799999999741
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E~ 148 (205)
.++..++|+.+|+|++++++.-+
T Consensus 185 ~~~l~~lA~~~~~S~~~l~r~fK 207 (276)
T 3gbg_A 185 NWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999997989999999999
No 279
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=64.83 E-value=4.4 Score=19.00 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9838999999779999999974
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E 147 (205)
.+++.++|..+|+++.++++.-
T Consensus 164 ~~t~~~iA~~lg~sr~tvsr~l 185 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVL 185 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 7789999988799999999999
No 280
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=64.37 E-value=2.3 Score=20.72 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHC-------CC--------------CCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 99889999984899999998877-------99--------------8889999999999828999996145322100002
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLFEN-------GM--------------CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~E~-------G~--------------~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~ 102 (205)
..|.+++|..++++...+++.-+ .. ..-+..++.++|..|+++-+.--.-..+-....+
T Consensus 186 prtl~eia~~~~i~~k~i~r~~k~i~~~L~~~~~~~~~~~~~~~~~~~~~~~fI~r~~~~L~l~~~~~~~a~~i~~~~~~ 265 (345)
T 3k7a_M 186 ARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKE 265 (345)
T ss_dssp SCCHHHHHHSSSCCSHHHHHHHHHHHHHHTCC------------------------------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 97789999881987999999999999998420111101245556787776888899998737972348999999999887
Q ss_pred CCCHHHHHHHHHHH---HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 32134554677799---999999972983899999977999999997
Q gi|254781218|r 103 VTNKKRLDPYAIGA---RLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 103 ~~~~~~~d~~~iG~---rLk~lR~~~glsq~elA~~lgis~~tis~~ 146 (205)
..-.....|..+.. -+.......+++|+++|+.+|++..|+.+.
T Consensus 266 ~~~~~Gr~P~siAaa~Iyla~~~~~~~~t~~~Ia~~~~vs~~TI~~~ 312 (345)
T 3k7a_M 266 IKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSG 312 (345)
T ss_dssp -----------------------------------------------
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 36577998699999999999999687989999998859879999999
No 281
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=64.33 E-value=4.9 Score=18.71 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999729838999999779999999974
Q gi|254781218|r 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~E 147 (205)
.-|+.+.+..+-.+.+.|+.+||++.|+.+-.
T Consensus 54 ~lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~Kl 85 (91)
T 1ntc_A 54 TLLTTALRHTQGHKQEAARLLGWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999968959999999798999999999
No 282
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=64.20 E-value=3.9 Score=19.34 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=12.2
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998599889999984899999998
Q gi|254781218|r 38 DIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 38 ~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
.+...-++||.+||..++++++++++
T Consensus 54 ~l~~~~~~t~~~La~~l~~~~~~vs~ 79 (162)
T 3k0l_A 54 VLAAKPNLSNAKLAERSFIKPQSANK 79 (162)
T ss_dssp HHHHCTTCCHHHHHHHHTSCGGGHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99977998999999998968869999
No 283
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=64.13 E-value=6.2 Score=18.07 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=14.2
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHH
Q ss_conf 999999859988999998489999999
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVN 62 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is 62 (205)
|+.|.+.--+|..++|+.+|+|++++.
T Consensus 14 l~~L~~d~R~s~~~ia~~lg~s~~tv~ 40 (152)
T 2cg4_A 14 LEALMGNARTAYAELAKQFGVSPETIH 40 (152)
T ss_dssp HHHHHHCTTSCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHH
T ss_conf 999998489999999999891999999
No 284
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=64.07 E-value=5.3 Score=18.50 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 983899999977999999997
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~ 146 (205)
+++-.|+++.+|++++++|+.
T Consensus 38 ~~~v~eLa~~l~~s~stvS~H 58 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQH 58 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHH
T ss_pred CEEHHHHHHHHCCCHHHHHHH
T ss_conf 907999774558598799999
No 285
>2l1p_A DNA-binding protein SATB1; PSI-2, NESG, structural genomics, protein structure initiati northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=63.58 E-value=5.7 Score=18.28 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCH
Q ss_conf 5998899999848999999988779988899
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi 73 (205)
+.+.|..||+.+-++++.||.+-|+.....+
T Consensus 31 kemnQS~LakecpLsQSmiSsIVNstyyanv 61 (83)
T 2l1p_A 31 KDMNQSSLAKECPLSQSMISSIVNSTYYANV 61 (83)
T ss_dssp TTSCHHHHHHHSSSCHHHHHHHHTCSSCCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCEEEC
T ss_conf 9961888877088189999999844000203
No 286
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406}
Probab=63.52 E-value=1.2 Score=22.47 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 98389999997799999999741
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E~ 148 (205)
.++|+++|..+|+++.++|++-+
T Consensus 168 ~~t~~~iA~~lG~sr~tlSRi~k 190 (194)
T 3dn7_A 168 RVPQYLLASYLGFTPEYLSEIRK 190 (194)
T ss_dssp -----------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 97999999997998999999999
No 287
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=63.44 E-value=4.4 Score=18.99 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=12.1
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 85998899999848999999988
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~ 64 (205)
..|+|-+++|..+|+|+.+|..+
T Consensus 11 ~~G~s~~eIA~~l~iS~~TV~~h 33 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETH 33 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 82799999998969899999999
No 288
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=63.29 E-value=7 Score=17.75 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=20.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999972983899999977999999997
Q gi|254781218|r 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 117 rLk~lR~~~glsq~elA~~lgis~~tis~~ 146 (205)
.+=.++--.|+|..|.|+.+|++..|+...
T Consensus 22 ~v~~l~~~~g~s~~EIA~~lgis~~tvk~~ 51 (70)
T 2o8x_A 22 EALLLTQLLGLSYADAAAVCGCPVGTIRSR 51 (70)
T ss_dssp HHHHHHHTSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999989990999999999989799999999
No 289
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=63.13 E-value=6.1 Score=18.12 Aligned_cols=29 Identities=17% Similarity=-0.052 Sum_probs=21.5
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+....++|+.++|..+++++++++++
T Consensus 54 L~~L~~~~~~s~~ela~~~~~~~stvs~~ 82 (207)
T 2fxa_A 54 LWIAYQLNGASISEIAKFGVMHVSTAFNF 82 (207)
T ss_dssp HHHHHHHTSEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999769949999999988698799999
No 290
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=62.78 E-value=7.1 Score=17.69 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=21.4
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
|..+...-++|+.+||..++++++++++.
T Consensus 43 L~~l~~~~~~t~~ela~~~~~~~~~vs~~ 71 (155)
T 1s3j_A 43 LASLKKHGSLKVSEIAERMEVKPSAVTLM 71 (155)
T ss_dssp HHHHHHHSEEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999869979999999989699899999
No 291
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=62.27 E-value=5.5 Score=18.37 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=14.0
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9972983899999977999999997
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~ 146 (205)
.-..|+|..+.|+.+|+|..|+..+
T Consensus 27 ~l~~G~s~~eIA~~l~iS~~TV~~~ 51 (79)
T 1x3u_A 27 AVVAGLPNKSIAYDLDISPRTVEVH 51 (79)
T ss_dssp HHTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9990799999999979889899999
No 292
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=62.06 E-value=5.3 Score=18.47 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=17.4
Q ss_pred HHHHHHCCCCHHHHHHHHCC--CHHHHHH
Q ss_conf 99999859988999998489--9999998
Q gi|254781218|r 37 KDIRKANNKTQKEMAIGANQ--LESAVNL 63 (205)
Q Consensus 37 k~lR~~~gltQ~elA~~~gi--s~~~is~ 63 (205)
..+++.-..|+.++|+.+|+ |+++|++
T Consensus 20 E~L~e~g~~t~~eIA~~lgi~~S~~~Vs~ 48 (111)
T 3b73_A 20 EIIHEEGNGSPKELEDRDEIRISKSSVSR 48 (111)
T ss_dssp HHHHHHSCBCHHHHHTSTTCCSCHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHH
T ss_conf 99998499999999998688847999999
No 293
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=61.87 E-value=6.2 Score=18.05 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=20.1
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 9999997298389999997799999999741
Q gi|254781218|r 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 118 Lk~lR~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
|....+..| +..+.|+.+||+++|+.+-..
T Consensus 26 I~~aL~~~g-~~~~aA~~Lgisr~tL~rKlk 55 (61)
T 1g2h_A 26 LKLFYAEYP-STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp HHHHHHHSC-SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999968-999999997978999999999
No 294
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=61.73 E-value=5.6 Score=18.32 Aligned_cols=27 Identities=7% Similarity=-0.077 Sum_probs=17.5
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999985998899999848999999988
Q gi|254781218|r 38 DIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 38 ~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
.+...-++|+.+||+.++++++++++.
T Consensus 37 ~l~~~~~~t~~~La~~l~i~~~~vs~~ 63 (144)
T 1lj9_A 37 RVCENPGIIQEKIAELIKVDRTTAARA 63 (144)
T ss_dssp HHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 998489979999999989788899999
No 295
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=61.70 E-value=7.5 Score=17.57 Aligned_cols=29 Identities=24% Similarity=0.419 Sum_probs=19.7
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999972983899999977999999997
Q gi|254781218|r 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 118 Lk~lR~~~glsq~elA~~lgis~~tis~~ 146 (205)
|..+.....++-.|+++.+|++++++|+.
T Consensus 33 l~~L~~~~~~~v~el~~~l~~s~stvS~H 61 (99)
T 2zkz_A 33 VNELYKHKALNVTQIIQILKLPQSTVSQH 61 (99)
T ss_dssp HHHHHHHSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99997789927999899888497699999
No 296
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=61.20 E-value=6.1 Score=18.10 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=14.9
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9972983899999977999999997
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~ 146 (205)
.-..|+|-.|.|+.+|+|..|+..+
T Consensus 22 ~l~~G~s~~eIA~~L~iS~~TV~~h 46 (74)
T 1fse_A 22 LLVQDKTTKEIASELFISEKTVRNH 46 (74)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9992799999999979899999999
No 297
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=60.93 E-value=7 Score=17.76 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=16.0
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 85998899999848999999988
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~ 64 (205)
..++|+.++|..+|++++++++.
T Consensus 48 ~~~~t~~~la~~~~~~~~tvs~~ 70 (144)
T 3f3x_A 48 EEPRSMVYLANRYFVTQSAITAA 70 (144)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 19969999999989788689999
No 298
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, multidrug-binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3d71_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=60.38 E-value=7.9 Score=17.43 Aligned_cols=47 Identities=9% Similarity=-0.000 Sum_probs=34.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHH-CCCCCCC-H----------------HHHHHHHHHHCCCHHHHH
Q ss_conf 988999998489999999887-7998889-9----------------999999998289999961
Q gi|254781218|r 45 KTQKEMAIGANQLESAVNLFE-NGMCSTS-I----------------RYALYLRNEYEISFDWIY 91 (205)
Q Consensus 45 ltQ~elA~~~gis~~~is~~E-~G~~~ps-i----------------~~l~~la~~~~vs~d~Ll 91 (205)
+|-.+||+.+|+|..++-.|| .|.-.|+ + -..+..-+.+++|++.+-
T Consensus 6 ysIge~akl~giS~~tLRyYd~~GLl~P~~~d~~ngYRyYs~~qi~~l~~I~~lr~lg~sL~eIk 70 (278)
T 1r8e_A 6 YSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMK 70 (278)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHHH
T ss_pred EEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 31999999988598899999968898997887999977739999999999999998699899999
No 299
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2
Probab=60.22 E-value=6 Score=18.18 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9838999999779999999974
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E 147 (205)
.++++++|..+|+++.++++..
T Consensus 186 ~~~~~~lA~~~g~sr~tv~R~L 207 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTL 207 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 7899999989798999999999
No 300
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=59.02 E-value=0.92 Score=23.19 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHC---CCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999985998899999848---9999999887799888999999999982
Q gi|254781218|r 31 DVGTRIKDIRKANNKTQKEMAIGAN---QLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 31 ~iG~rik~lR~~~gltQ~elA~~~g---is~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
.+-.+|..+-...|++-.+|-.... .......+--+-...+.+..+..+|+-|
T Consensus 339 ~~q~kl~~Ie~~~glsi~E~k~i~r~I~~ger~~~ra~~~~~~~~~~lv~~~a~~~ 394 (613)
T 3iyd_F 339 RALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 (613)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999998729997899999999999878889899999999999999998446
No 301
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.92 E-value=6.8 Score=17.80 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 5998899999848999999988
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~ 64 (205)
-++||.+||..++++++++++.
T Consensus 51 ~~~t~~eL~~~~~~~~~~vs~~ 72 (146)
T 2fbh_A 51 DSPTQRELAQSVGVEGPTLARL 72 (146)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999989689899999
No 302
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=58.60 E-value=6.8 Score=17.84 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHC----CC---------CCCCHHHHHHHHHHHCC
Q ss_conf 98389999997799999999741----48---------89998999999998289
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYEQ----GR---------TIPEIKPARKIKQVTKK 167 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E~----g~---------~~Ps~~~l~kIa~~lgv 167 (205)
.++|.++|+.+|+++.++++.-+ .. ..++.+.|.++|+.-|.
T Consensus 146 ~~t~~~iA~~lg~sr~tv~r~l~~L~~~g~I~~~~~~i~I~d~~~L~~~a~~~g~ 200 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKELAESRGQ 200 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHTSCC-
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHHHCCC
T ss_conf 8879999989798899999999999988999974999999889999999986289
No 303
>2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation component regulatory system; NMR {Bacillus subtilis}
Probab=58.52 E-value=7.8 Score=17.45 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=16.4
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9972983899999977999999997
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~ 146 (205)
.-..|++..|.|+.++++..|+..+
T Consensus 23 ~~~~G~s~~eIA~~l~iS~~TV~~~ 47 (73)
T 2krf_A 23 EVEKGFTNQEIADALHLSKRSIEYS 47 (73)
T ss_dssp HHHTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9995899999841618889999999
No 304
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=58.51 E-value=4.7 Score=18.81 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=19.3
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99985998899999848999999988
Q gi|254781218|r 39 IRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 39 lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+...-++|+.+||..++++++++++.
T Consensus 52 l~~~~~~t~~eLa~~l~~~~~tvs~~ 77 (155)
T 3cdh_A 52 LVDNDAMMITRLAKLSLMEQSRMTRI 77 (155)
T ss_dssp HSSCSCBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 98579969999999989699889999
No 305
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=58.51 E-value=2.7 Score=20.27 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=20.5
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+...-++|+.+||+.++++++++++.
T Consensus 39 L~~l~~~~~~t~~~La~~l~~~~~tvs~~ 67 (139)
T 3bja_A 39 IQVLAKSGKVSMSKLIENMGCVPSNMTTM 67 (139)
T ss_dssp HHHHHHSCSEEHHHHHHHCSSCCTTHHHH
T ss_pred HHHHHHCCCCCHHHHHHHCCCCHHHHHHH
T ss_conf 99999869989999984708688899999
No 306
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3h3u_A*
Probab=58.39 E-value=6.7 Score=17.87 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 2983899999977999999997
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~ 146 (205)
..+|+.++|..+|+++.++++.
T Consensus 176 ~~~t~~~lA~~lg~s~~tvsr~ 197 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKA 197 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 0789999998879899999999
No 307
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=57.74 E-value=7.6 Score=17.51 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=18.9
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99729838999999779999999974
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~E 147 (205)
.-..|++-+|.|+.+++|..|+..+-
T Consensus 32 lla~G~s~~eIA~~L~iS~~TV~~~~ 57 (82)
T 1je8_A 32 LIAQGLPNKMIARRLDITESTVKVHV 57 (82)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99928999999989795999999999
No 308
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=57.54 E-value=8.8 Score=17.13 Aligned_cols=31 Identities=10% Similarity=0.047 Sum_probs=21.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999972983899999977999999997
Q gi|254781218|r 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~ 146 (205)
.-|..+....+..+.+.|+.+||+++++.+.
T Consensus 22 ~~I~~aL~~~~gn~s~aA~~Lgi~r~tL~~k 52 (63)
T 3e7l_A 22 IFIEEKLREYDYDLKRTAEEIGIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999991998999999989799999999
No 309
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.45 E-value=8.8 Score=17.13 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=21.6
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999859988999998489999999887
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLFE 65 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~E 65 (205)
|..+...-++++.++|.+++++++++|+.-
T Consensus 42 L~~l~~~~~~~~~~la~~l~i~~~~vs~~i 71 (142)
T 2fbi_A 42 IRILRQQGEMESYQLANQACILRPSMTGVL 71 (142)
T ss_dssp HHHHHHHCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999998799799999999798988999999
No 310
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.17 E-value=8.7 Score=17.16 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=16.3
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9972983899999977999999997
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~ 146 (205)
....|+|..|.|+.+|++..|+..+
T Consensus 38 ll~~G~s~~eIA~~L~iS~~TV~~~ 62 (95)
T 3c57_A 38 LLSEGLTNKQIADRMFLAEKTVKNY 62 (95)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9990799999987949789999999
No 311
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A
Probab=57.14 E-value=8.9 Score=17.09 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=11.3
Q ss_pred HCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 8599889999984899999998
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~ 63 (205)
...+|..+||+.+|++...|++
T Consensus 25 g~~~tA~~LAk~lg~~Kk~vN~ 46 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINR 46 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHCCCHHHHHH
T ss_conf 9752199999996988889899
No 312
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=56.63 E-value=6.2 Score=18.05 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=17.0
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 85998899999848999999988
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~ 64 (205)
..++|+.++|+.++++++++|+.
T Consensus 49 ~~~~t~~~la~~l~i~~~~vs~~ 71 (151)
T 3kp7_A 49 IEALTVGQITEKQGVNKAAVSRR 71 (151)
T ss_dssp HSCBCHHHHHHHHCSCSSHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 28999999999989688899999
No 313
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=56.07 E-value=8.4 Score=17.25 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=23.0
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 9972983899999977999999997414
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
.-..|+|.+|.|+.+|+|..|+..+-+.
T Consensus 170 ll~~G~snkeIA~~L~iS~~TVk~h~~~ 197 (225)
T 3klo_A 170 LLGSGASNIEIADKLFVSENTVKTHLHN 197 (225)
T ss_dssp HHTTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 5533997999999978899999999999
No 314
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=55.58 E-value=9.5 Score=16.93 Aligned_cols=24 Identities=8% Similarity=0.010 Sum_probs=18.1
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 985998899999848999999988
Q gi|254781218|r 41 KANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 41 ~~~gltQ~elA~~~gis~~~is~~ 64 (205)
....+|+.++|+.+|++++++|+.
T Consensus 38 ~~~p~t~~eLa~~l~is~s~vs~~ 61 (152)
T 1ku9_A 38 SDKPLTISDIMEELKISKGNVSMS 61 (152)
T ss_dssp CSSCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 698929999999989688579999
No 315
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=55.57 E-value=7.1 Score=17.72 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 5998899999848999999988
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~ 64 (205)
-++||.+||+.++++++++++.
T Consensus 53 ~~~t~~ela~~l~~~~~~vsr~ 74 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGL 74 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 8989999999978878778899
No 316
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=54.93 E-value=8.4 Score=17.26 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 998899999848999999988
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~ 64 (205)
++|+.+||+.++++++++++.
T Consensus 68 ~~t~~eLa~~l~i~~stvsr~ 88 (166)
T 3deu_A 68 DQSQIQLAKAIGIEQPSLVRT 88 (166)
T ss_dssp SEEHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 979999999979899899999
No 317
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=54.65 E-value=3.5 Score=19.60 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=17.1
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 85998899999848999999988
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~ 64 (205)
..|+||.++|+.++++++++++.
T Consensus 55 ~~~it~~eLa~~l~~~~~~~sr~ 77 (148)
T 3jw4_A 55 ESGIIQKDLAQFFGRRGASITSM 77 (148)
T ss_dssp TTCCCHHHHHHC------CHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99939999999989778589999
No 318
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=54.48 E-value=8.6 Score=17.20 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+....+.|+.+||+.++++.+++++.
T Consensus 59 L~~l~~~~~~t~~~la~~l~i~~~~vs~~ 87 (161)
T 3e6m_A 59 LSSLSAYGELTVGQLATLGVMEQSTTSRT 87 (161)
T ss_dssp HHHHHHHSEEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999779989999999989788799999
No 319
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=54.15 E-value=8.6 Score=17.18 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=17.0
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9972983899999977999999997
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~ 146 (205)
---.|.+|.++|..+|++++.+++.
T Consensus 30 VLV~G~~~~evA~~~Glskq~V~~~ 54 (101)
T 2w7n_A 30 VLVDGKPQATFATSLGLTRGAVSQA 54 (101)
T ss_dssp HHTTCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCHHHHHHHH
T ss_conf 9848840999999968038899999
No 320
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=53.81 E-value=4.6 Score=18.85 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 29838999999779999999974
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~E 147 (205)
.|.+..++|..+||+.+++.+|-
T Consensus 29 ~g~~~~~va~~Lgi~~~tl~~Wv 51 (108)
T 2rn7_A 29 QWATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 55519999999797999999999
No 321
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=53.67 E-value=7.4 Score=17.61 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=16.9
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9972983899999977999999997
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~ 146 (205)
.-..|++..|.|+.++++..|+..+
T Consensus 40 ll~~G~s~~eIA~~L~iS~~TV~~~ 64 (91)
T 2rnj_A 40 LIAKGYSNQEIASASHITIKTVKTH 64 (91)
T ss_dssp HHHTTCCTTHHHHHHTCCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9992899999999978899999999
No 322
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=53.55 E-value=6.5 Score=17.93 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=18.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
Q ss_conf 98899999848999999988779988899999
Q gi|254781218|r 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 (205)
Q Consensus 45 ltQ~elA~~~gis~~~is~~E~G~~~psi~~l 76 (205)
-.=+.||..+|++...|..|++.. +|+..+|
T Consensus 22 ~dWr~LA~~Lgl~~~~I~~i~~~~-spt~~lL 52 (85)
T 1ngr_A 22 DTWRHLAGELGYQPEHIDSFTHEA-CPVRALL 52 (85)
T ss_dssp THHHHHHHHTTCCHHHHHHHHHSS-CHHHHHH
T ss_pred CCHHHHHHHCCCCHHHHHHHHCCC-CHHHHHH
T ss_conf 768999989398999999884389-8599999
No 323
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=53.47 E-value=9.2 Score=17.01 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=20.8
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 997298389999997799999999741
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
.-..|++..+.|+.+|++..|+..+-+
T Consensus 45 ll~~G~s~~eIA~~l~iS~~TV~~~~~ 71 (99)
T 1p4w_A 45 LFAEGFLVTEIAKKLNRSIKTISSQKK 71 (99)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999389999997772998999999999
No 324
>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2
Probab=53.16 E-value=3.4 Score=19.68 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=13.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 8389999997799999999741
Q gi|254781218|r 127 MSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 127 lsq~elA~~lgis~~tis~~E~ 148 (205)
+|..|+|+.+|+|+..+.+++.
T Consensus 39 ~tl~eIa~~lgvSrerVRQie~ 60 (81)
T 1tlh_B 39 YTLEEVGKQFDVTRERIRQIEA 60 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 5799999998979999999999
No 325
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=53.07 E-value=0.23 Score=26.87 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=22.0
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 972983899999977999999997414
Q gi|254781218|r 123 KDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 123 ~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
.++|++|.|.|+.+|.|++.+|-+|..
T Consensus 2 R~kG~tQ~eIA~~LgTSraNVs~IEk~ 28 (122)
T 1nr3_A 2 RERGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CCCSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 625787999999977758899999999
No 326
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=52.85 E-value=3.4 Score=19.65 Aligned_cols=28 Identities=7% Similarity=0.003 Sum_probs=19.8
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985998899999848999999988
Q gi|254781218|r 37 KDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 37 k~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
..+-...++|+.++|+.++++++++++.
T Consensus 43 ~~l~~~~~~t~~ela~~l~~~~~tvs~~ 70 (140)
T 3hsr_A 43 MAIENDEKLNIKKLGERVFLDSGTLTPL 70 (140)
T ss_dssp HHSCTTCEEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9998679989999999989786479999
No 327
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=52.31 E-value=9.1 Score=17.03 Aligned_cols=22 Identities=23% Similarity=0.007 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 5998899999848999999988
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~ 64 (205)
..+|+.++|+.++++++++++.
T Consensus 49 ~~~t~~ela~~~~i~~~~vs~~ 70 (146)
T 2gxg_A 49 GPKTMAYLANRYFVTQSAITAS 70 (146)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9919999999989798699999
No 328
>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A
Probab=51.61 E-value=11 Score=16.54 Aligned_cols=56 Identities=5% Similarity=-0.009 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 66899999999999999998599889999984899999998877998889999999
Q gi|254781218|r 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 (205)
Q Consensus 23 ~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~ 78 (205)
+++++---+.+.++=.-+--.+.|-.++|+.+|+|++++.++=.++...=...+..
T Consensus 6 ~~lR~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~~lY~~F~sKe~L~~~~~~~ 61 (192)
T 2zcm_A 6 HHMKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVEN 61 (192)
T ss_dssp --CHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999997492627799999988909889978879999999999999
No 329
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=50.80 E-value=11 Score=16.50 Aligned_cols=56 Identities=4% Similarity=-0.028 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 566899999999999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 22 ~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
+.........+=.+|+.+|. ++|...|+.+..| .+-..|..||+..-.+++.|..-
T Consensus 7 s~~~~~~~~~l~~~L~~~R~-------~~A~~~~~p~~~I---------~~d~~L~~ia~~~P~t~~eL~~I 62 (103)
T 2e1f_A 7 SAQEQETQIVLYGKLVEARQ-------KHANKMDVPPAIL---------ATNKILVDMAKMRPTTVENVKRI 62 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHHHHTSCHHHH---------CCHHHHHHHHHHCCCSHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHH-------HHHHHCCCCCEEE---------ECHHHHHHHHHHCCCCHHHHHCC
T ss_conf 55334799999999999999-------9999759792044---------78999999998789999999378
No 330
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=50.66 E-value=11 Score=16.47 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=20.6
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 859988999998489999999887
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFE 65 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E 65 (205)
..++|..|+|+.+|++++++.++=
T Consensus 27 ~~~~~~~eia~~~gl~~st~~RlL 50 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRIL 50 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999899999998793999999999
No 331
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=50.38 E-value=11 Score=16.42 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCC
Q ss_conf 56689999999999999999859988999998489999999887799888999999999982899999614532210000
Q gi|254781218|r 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 (205)
Q Consensus 22 ~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~ 101 (205)
++.+.+|.+.|=.- ..+....+..++|+.+|+++++++. .+.+|.+. .++... .....
T Consensus 3 t~s~EdYL~~I~~l---~~~~~~v~~~dlA~~L~vs~~sv~~-----------~lk~L~~~-----GlI~~~---~~~~i 60 (142)
T 1on2_A 3 TPSMEMYIEQIYML---IEEKGYARVSDIAEALAVHPSSVTK-----------MVQKLDKD-----EYLIYE---KYRGL 60 (142)
T ss_dssp CHHHHHHHHHHHHH---HHHHSSCCHHHHHHHHTSCHHHHHH-----------HHHHHHHT-----TSEEEE---TTTEE
T ss_pred CCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHCCCHHHHHH-----------HHHHHHHC-----CCCCCC---CCCCE
T ss_conf 95399999999999---8537988699999996988789999-----------99999857-----984406---99866
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHH-HHCCCCCCCHHHHHHHHHHHC
Q ss_conf 23213455467779999999997298389999997799999999-741488999899999999828
Q gi|254781218|r 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN-YEQGRTIPEIKPARKIKQVTK 166 (205)
Q Consensus 102 ~~~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~-~E~g~~~Ps~~~l~kIa~~lg 166 (205)
.++++. ..++.+|.. ..+= ...|-..+|++...+.. -+.=....+.+.+.+|+..++
T Consensus 61 ~LT~~G----~~~A~~l~r--rhrl--~e~fl~~lg~~~~~a~~~A~~~EH~ls~e~~~~l~~~l~ 118 (142)
T 1on2_A 61 VLTSKG----KKIGKRLVY--RHEL--LEQFLRIIGVDEEKIYNDVEGIEHHLSWNSIDRIGDLVQ 118 (142)
T ss_dssp EECHHH----HHHHHHHHH--HHHH--HHHHHHHTTCCHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred EECHHH----HHHHHHHHH--HHHH--HHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 777889----999999999--9999--999999958990068999998853198999999999976
No 332
>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656}
Probab=50.25 E-value=12 Score=16.40 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 2983899999977999999997
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~ 146 (205)
..++++++|..+|+++.++++.
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsr~ 189 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRM 189 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 7899999999979899999999
No 333
>3mop_A Myeloid differentiation primary response protein; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=50.10 E-value=8.7 Score=17.16 Aligned_cols=31 Identities=10% Similarity=-0.076 Sum_probs=15.6
Q ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 89999984899999998877998889999999
Q gi|254781218|r 47 QKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 (205)
Q Consensus 47 Q~elA~~~gis~~~is~~E~G~~~psi~~l~~ 78 (205)
=+.||..+|++...|..+|.. .+|+..+|..
T Consensus 29 Wr~LA~~Lg~~~~~I~~~~~~-~sPt~~lL~~ 59 (110)
T 3mop_A 29 WTALAEEMDFEYLEIRQLETQ-ADPTGRLLDA 59 (110)
T ss_dssp HHHHHTTTTCCHHHHHHHTSS-SSHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCC-CCCHHHHHHH
T ss_conf 999998949899999988508-9949999999
No 334
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=50.06 E-value=12 Score=16.38 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=19.9
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 99729838999999779999999974148
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~E~g~ 150 (205)
.....++..++|+.+|+|+.+++++-...
T Consensus 89 ~~~~~~sl~~la~~~g~S~~~l~R~Fk~~ 117 (133)
T 1u8b_A 89 EQETPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp CSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 04799999999426198999999999999
No 335
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=48.86 E-value=10 Score=16.70 Aligned_cols=33 Identities=15% Similarity=0.036 Sum_probs=27.2
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 999859988999998489999999887799888
Q gi|254781218|r 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 39 lR~~~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
-+--.+.|-.++|+.+|||+.++.+|=.++...
T Consensus 24 ~~G~~~~s~~~Ia~~agvs~~tiY~~F~~K~~L 56 (215)
T 1ui5_A 24 RRGYESTTLSEIVAHAGVTKGALYFHFAAKEDL 56 (215)
T ss_dssp HHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHH
T ss_conf 859151879999998687821187616999999
No 336
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=47.54 E-value=5.2 Score=18.55 Aligned_cols=29 Identities=7% Similarity=0.010 Sum_probs=22.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985998899999848999999988
Q gi|254781218|r 36 IKDIRKANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 36 ik~lR~~~gltQ~elA~~~gis~~~is~~ 64 (205)
+..+...-++|+.++|..++++++++++.
T Consensus 43 L~~i~~~~~~t~~~la~~l~~~~~~vs~~ 71 (142)
T 2bv6_A 43 LTILWDESPVNVKKVVTELALDTGTVSPL 71 (142)
T ss_dssp HHHHHHSSEEEHHHHHHHTTCCTTTHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999779989999999989798799999
No 337
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=47.23 E-value=4.3 Score=19.02 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 998899999848999999988
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~ 64 (205)
++|+.+||+.++++++++++.
T Consensus 62 ~~t~~~La~~~~v~~~~vs~~ 82 (160)
T 3boq_A 62 GLSMGKLSGALKVTNGNVSGL 82 (160)
T ss_dssp CEEHHHHHHHCSSCCSCHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 998999999989688589999
No 338
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=47.04 E-value=10 Score=16.69 Aligned_cols=114 Identities=10% Similarity=0.022 Sum_probs=56.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH-----CCCCCCCHHHHHHHHHHHCCCHHH--HHCCCCCCCCCCCCCC
Q ss_conf 999999999859988999998489999999887-----799888999999999982899999--6145322100002321
Q gi|254781218|r 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFE-----NGMCSTSIRYALYLRNEYEISFDW--IYDGEVIDRRYEDVTN 105 (205)
Q Consensus 33 G~rik~lR~~~gltQ~elA~~~gis~~~is~~E-----~G~~~psi~~l~~la~~~~vs~d~--Ll~ge~~~~~~~~~~~ 105 (205)
-.-+..+++.-.+|..++|+.++++..++.++= .|...-+... .-...|-.+... .+.. ........+ .
T Consensus 433 ~~iL~~l~~~~~it~~ela~~l~~s~~~~~~~L~~L~~~glie~~~~~--g~~~~y~ls~~~~~~~~~-~~~~~~~~~-~ 508 (583)
T 3lmm_A 433 AIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLII--AHDGVWLLGNACREILRK-VEPSPFSPV-R 508 (583)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEE--EETTEEEECHHHHHHHTS-CC---------
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCC--CCCCEEEECHHHHHHHHC-CCCCCCCCC-C
T ss_conf 999999986888789999988688999999999999977973324556--658758526888765201-001211100-2
Q ss_pred HHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 345546777999-999999729838999999779999999974148
Q gi|254781218|r 106 KKRLDPYAIGAR-LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 106 ~~~~d~~~iG~r-Lk~lR~~~glsq~elA~~lgis~~tis~~E~g~ 150 (205)
....++...-.. +..++..-.+|..++++.+|++.+++.++.+.-
T Consensus 509 ~~~~~~~~~~~~Il~~l~~~g~it~~ei~~llgls~~~v~~~L~~L 554 (583)
T 3lmm_A 509 YLSTDQAELTNAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGL 554 (583)
T ss_dssp ----------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 4676777899999999997599389999999787999999999999
No 339
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=46.72 E-value=13 Score=16.06 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 2983899999977999999997
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~ 146 (205)
.+++..|+|+.+|+++++++..
T Consensus 42 ~~~~~~eLa~~lg~s~stvs~H 63 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYH 63 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 7997999999989199899999
No 340
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=46.33 E-value=13 Score=16.09 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.5
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 85998899999848999999988
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~ 64 (205)
..++|..|+|..+|++++++.++
T Consensus 21 ~~~~tl~eia~~lglpksT~~Rl 43 (249)
T 1mkm_A 21 PGDVSVSEIAEKFNMSVSNAYKY 43 (249)
T ss_dssp SSCBCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99989999999879199999999
No 341
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=46.30 E-value=13 Score=16.02 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=19.9
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999972983899999977999999997
Q gi|254781218|r 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 118 Lk~lR~~~glsq~elA~~lgis~~tis~~ 146 (205)
|+.+.....++-.++|+.+|++++++|+.
T Consensus 48 l~~L~~~~~~~v~ela~~l~~s~s~vS~H 76 (122)
T 1u2w_A 48 TYALCQDEELCVCDIANILGVTIANASHH 76 (122)
T ss_dssp HHHHHHSSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998788927999999988873269999
No 342
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=45.73 E-value=10 Score=16.67 Aligned_cols=19 Identities=16% Similarity=-0.039 Sum_probs=10.4
Q ss_pred CCHHHHHHHHCCCHHHHHH
Q ss_conf 9889999984899999998
Q gi|254781218|r 45 KTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 45 ltQ~elA~~~gis~~~is~ 63 (205)
+|+.++|..++++++++++
T Consensus 54 ~t~~ela~~l~~~~~~vs~ 72 (127)
T 2frh_A 54 YYLKDIINHLNYKQPQVVK 72 (127)
T ss_dssp EEHHHHHHHSSSHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
T ss_conf 7899999997988736999
No 343
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=44.87 E-value=14 Score=15.92 Aligned_cols=41 Identities=5% Similarity=-0.051 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 99999999999859988999998489999999887799888
Q gi|254781218|r 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 31 ~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
+-+.++=.-+--.++|-.++|+.+|+|++++.++=.++...
T Consensus 15 ~AA~~l~~e~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L 55 (202)
T 2d6y_A 15 EAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGEL 55 (202)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 99999999759040879999999790988996886999999
No 344
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=44.35 E-value=14 Score=15.84 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.6
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 85998899999848999999988
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~ 64 (205)
..++|..|+|..+|++++++.++
T Consensus 36 ~~~~~l~eia~~lgl~~sT~~Rl 58 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRL 58 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99989999999979199999999
No 345
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=43.51 E-value=6.9 Score=17.78 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHH------CCCHHHHHHHHCC
Q ss_conf 599889999984------8999999988779
Q gi|254781218|r 43 NNKTQKEMAIGA------NQLESAVNLFENG 67 (205)
Q Consensus 43 ~gltQ~elA~~~------gis~~~is~~E~G 67 (205)
..++|.+||+-. .|+++|||+|-+.
T Consensus 29 ~~~~Q~~la~wf~~~fg~~Is~STvs~ILk~ 59 (144)
T 1iuf_A 29 NRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp SCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9877999999999998799869899999978
No 346
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=43.41 E-value=14 Score=15.79 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=9.3
Q ss_pred CCCHHHHHHHH-----CCCHHHHHH
Q ss_conf 99889999984-----899999998
Q gi|254781218|r 44 NKTQKEMAIGA-----NQLESAVNL 63 (205)
Q Consensus 44 gltQ~elA~~~-----gis~~~is~ 63 (205)
=-||++|...+ .+|+++||+
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTlSR 43 (64)
T 2p5k_A 19 IETQDELVDMLKQDGYKVTQATVSR 43 (64)
T ss_dssp CCSHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCEEHHHHHH
T ss_conf 7889999999998598363899898
No 347
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=43.09 E-value=13 Score=16.11 Aligned_cols=68 Identities=6% Similarity=-0.026 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 99999999999999998599889999984899999998877998889999999999828999996145
Q gi|254781218|r 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 (205)
Q Consensus 26 ~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~g 93 (205)
++---+-+.++=.-+--.+.|-.++|+.+|+++.++.+|=.++...=...+..+.+.+.-.+..+..+
T Consensus 6 R~~Il~aA~~l~~~~G~~~~s~~~IA~~AGvs~~siY~yF~~K~~L~~a~~~~~~~~~~~~~~~~~~~ 73 (185)
T 2yve_A 6 KEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKELRDITRD 73 (185)
T ss_dssp HHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998690517799999986838531306689999999999999999999999998728
No 348
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=42.31 E-value=15 Score=15.64 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=16.1
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 972983899999977999999997
Q gi|254781218|r 123 KDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 123 ~~~glsq~elA~~lgis~~tis~~ 146 (205)
....++..++|+.+|++++++|+.
T Consensus 36 ~~~~~~v~el~~~l~~s~s~vS~H 59 (106)
T 1r1u_A 36 SVSEASVGHISHQLNLSQSNVSHQ 59 (106)
T ss_dssp HHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 829967999999876586589999
No 349
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila str} PDB: 3fxe_A
Probab=42.20 E-value=13 Score=16.12 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 689999999999999999
Q gi|254781218|r 24 EIRQYWKDVGTRIKDIRK 41 (205)
Q Consensus 24 ~~~~~~~~iG~rik~lR~ 41 (205)
|..+|.+.||++++.+|.
T Consensus 27 e~SnFLRvIGKnL~eIRd 44 (57)
T 3fxd_A 27 DKSNFLRVIGKKLIAIRD 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 488899999888999999
No 350
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, protein-DNA complex, , DNA binding protein/DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=41.96 E-value=15 Score=15.61 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 983899999977999999997414889
Q gi|254781218|r 126 GMSQIEFGKLLGMPNSTLSNYEQGRTI 152 (205)
Q Consensus 126 glsq~elA~~lgis~~tis~~E~g~~~ 152 (205)
..|+.++|+.+|++..+|+++.+|++.
T Consensus 135 f~S~~eaa~~~gv~~~~I~~~~~gk~~ 161 (174)
T 1u3e_M 135 YPSTKCACEELGLTRGKVTDVLKGHRI 161 (174)
T ss_dssp ESCHHHHHHHHTCCHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 689999999979898899999738876
No 351
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=41.68 E-value=15 Score=15.64 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=20.6
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 859988999998489999999887
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFE 65 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E 65 (205)
..++|..|+|..+|++++++.++=
T Consensus 34 ~~~lsl~eia~~l~l~kst~~RlL 57 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFL 57 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999799999999794999999999
No 352
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=41.56 E-value=4.5 Score=18.93 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 29838999999779999999974
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~E 147 (205)
..+|+.++|..+|+++.++++.-
T Consensus 163 ~~~t~~~iA~~lg~sr~tvsr~l 185 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVF 185 (213)
T ss_dssp -----------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 05689999999798999999999
No 353
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=41.47 E-value=15 Score=15.78 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=13.6
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999972983899999977999999997
Q gi|254781218|r 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 118 Lk~lR~~~glsq~elA~~lgis~~tis~~ 146 (205)
|+++-..+-.+..+|...-|+....+.+|
T Consensus 36 L~~iA~~~P~t~~eL~~I~Gvg~~k~~kY 64 (81)
T 1d8b_A 36 LKKMAAILPMNDSAFATLGTVEDKYRRRF 64 (81)
T ss_dssp HHHHHHHCCCSHHHHGGGSCCCHHHHHHG
T ss_pred HHHHHHHCCCCHHHHCCCCCCCHHHHHHH
T ss_conf 99999868999999827999998999999
No 354
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=40.99 E-value=16 Score=15.52 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=19.4
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999729838999999779999999974
Q gi|254781218|r 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 118 Lk~lR~~~glsq~elA~~lgis~~tis~~E 147 (205)
|..++ +..++..++++.+|++++++|+..
T Consensus 27 l~~L~-~~~~~v~ela~~lgis~stvS~HL 55 (118)
T 2jsc_A 27 LVALL-DGVCYPGQLAAHLGLTRSNVSNHL 55 (118)
T ss_dssp HHHHH-TTCCSTTTHHHHHSSCHHHHHHHH
T ss_pred HHHHH-CCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99998-199289999999892999999999
No 355
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=40.92 E-value=16 Score=15.51 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=24.3
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 99997298389999997799999999741
Q gi|254781218|r 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 120 ~lR~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
.++-..|+|..+.|+.+|++..++....+
T Consensus 150 ~l~y~~g~s~~eIA~~lg~s~~tV~~~l~ 178 (194)
T 1or7_A 150 TLRELDGLSYEEIAAIMDCPVGTVRSRIF 178 (194)
T ss_dssp HHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99998398999999998939999999999
No 356
>1d2z_A Death domain of pelle; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2 PDB: 1ik7_A 1ygo_A
Probab=39.77 E-value=17 Score=15.40 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=19.0
Q ss_pred HHHHHHHCCCHHHHHHHHC---CCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999984899999998877---9988899999999998289999961
Q gi|254781218|r 48 KEMAIGANQLESAVNLFEN---GMCSTSIRYALYLRNEYEISFDWIY 91 (205)
Q Consensus 48 ~elA~~~gis~~~is~~E~---G~~~psi~~l~~la~~~~vs~d~Ll 91 (205)
+.||..+|.+...|..++. ...+|+...|..-...-+.++..|+
T Consensus 35 r~LA~~Lg~~~~~I~~i~~~~~~~~sPt~~LL~~W~~~~~~Tv~~L~ 81 (108)
T 1d2z_A 35 QQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLF 81 (108)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999959899999999873266888699999999807557099999
No 357
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP}
Probab=39.19 E-value=13 Score=16.15 Aligned_cols=50 Identities=6% Similarity=-0.001 Sum_probs=33.1
Q ss_pred HHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999998--59988999998489999999887799888999999999982
Q gi|254781218|r 34 TRIKDIRKA--NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 34 ~rik~lR~~--~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
.=++.+.+. .+.|-.++|+.+|||+.++.+|=.++...=...+......+
T Consensus 22 aa~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~~K~~Ll~~~~~~~~~~~ 73 (203)
T 3f1b_A 22 AAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRF 73 (203)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999739352879999999890988887881998999999999999999
No 358
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=38.91 E-value=17 Score=15.31 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=13.5
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 72983899999977999999997
Q gi|254781218|r 124 DKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 124 ~~glsq~elA~~lgis~~tis~~ 146 (205)
...++..|+|+.+|++++++|+.
T Consensus 34 ~~~~~v~ela~~l~~s~~tvS~H 56 (98)
T 3jth_A 34 NQELSVGELCAKLQLSQSALSQH 56 (98)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 29937999999988595678899
No 359
>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=38.84 E-value=16 Score=15.60 Aligned_cols=31 Identities=10% Similarity=-0.100 Sum_probs=25.2
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 9859988999998489999999887799888
Q gi|254781218|r 41 KANNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 41 ~~~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
--.+.|-.++|+.+|||+.++.++=.++...
T Consensus 25 G~~~~t~~~IA~~agvs~~tiY~~F~sK~~L 55 (199)
T 2o7t_A 25 HHDSLTMENIAEQAGVGVATLYRNFPDRFTL 55 (199)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHCCCHHHH
T ss_conf 9140779999998686913177608999999
No 360
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=38.76 E-value=17 Score=15.30 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=22.7
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 997298389999997799999999741
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
....|+|-.|.|..+|||..|+..+-+
T Consensus 184 ~~a~G~s~~eIA~~L~iS~~TV~~hl~ 210 (234)
T 1l3l_A 184 WIAVGKTMEEIADVEGVKYNSVRVKLR 210 (234)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 997699999999996989999999999
No 361
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=38.59 E-value=16 Score=15.58 Aligned_cols=55 Identities=5% Similarity=-0.109 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999999985---9988999998489999999887799888999999999982
Q gi|254781218|r 29 WKDVGTRIKDIRKAN---NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 29 ~~~iG~rik~lR~~~---gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
...|=+--..+=.++ +.|-.++|+.+|||++++.+|=.++...=...+-.....+
T Consensus 19 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~ 76 (218)
T 3gzi_A 19 RDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHETAMPV 76 (218)
T ss_dssp HHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999749141649999998791976888745889999999999999999
No 362
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=38.54 E-value=4.7 Score=18.82 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 298389999997799999999741
Q gi|254781218|r 125 KGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 125 ~glsq~elA~~lgis~~tis~~E~ 148 (205)
.+++..|......+-...+.+.|.
T Consensus 156 ~~l~~ee~~~l~~~L~kl~~~lEe 179 (181)
T 2fbk_A 156 APLSAQEQRTLEELAGRMLAGLEQ 179 (181)
T ss_dssp TTSCTTHHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 379999999999999999998867
No 363
>3obc_A Pyrophosphatase; dimeric four alpha-helical bundle, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PGE; 1.80A {Archaeoglobus fulgidus}
Probab=37.81 E-value=18 Score=15.21 Aligned_cols=20 Identities=5% Similarity=0.146 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHCCCCH
Q ss_conf 99999999999999859988
Q gi|254781218|r 28 YWKDVGTRIKDIRKANNKTQ 47 (205)
Q Consensus 28 ~~~~iG~rik~lR~~~gltQ 47 (205)
...++-++|+..++.+||.|
T Consensus 12 ~i~el~~~i~~F~~~R~W~q 31 (118)
T 3obc_A 12 HMEELLDILREFRDSRGWLK 31 (118)
T ss_dssp HHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999999999779731
No 364
>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A*
Probab=37.61 E-value=17 Score=15.34 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 998899999848999999988779988899999999998289999961
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll 91 (205)
++|-.++|+.+||+++++.+|=.++...=...+-.+...+.-.++.++
T Consensus 64 ~~Tl~~IA~~aGvs~~tlY~~F~sK~~L~~av~~~~~~~~~~~~~~~~ 111 (256)
T 3g1l_A 64 DISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLA 111 (256)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 176999999989099999888288999999999999999999999986
No 365
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=37.49 E-value=18 Score=15.18 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 68999999999999999-98599889999984899999998877998889999999999828999996145322100002
Q gi|254781218|r 24 EIRQYWKDVGTRIKDIR-KANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 (205)
Q Consensus 24 ~~~~~~~~iG~rik~lR-~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~ 102 (205)
...+|.+.| ..+. +....++.++|..+|+++.+++.. +.+|++.--|. .. .+....
T Consensus 3 ~~EdyL~~i----~~l~~~~~~v~~~~iA~~l~vs~~sv~~~-----------l~rL~~~g~i~-----~~---~~~~i~ 59 (214)
T 3hrs_A 3 NKEDYLKCL----YELGTRHNKITNKEIAQLMQVSPPAVTEM-----------MKKLLAEELLI-----KD---KKAGYL 59 (214)
T ss_dssp CHHHHHHHH----HHTTSSCSCCCHHHHHHHHTCCHHHHHHH-----------HHHHHHTTSEE-----EE---TTTEEE
T ss_pred HHHHHHHHH----HHHHHCCCCCCHHHHHHHHCCCHHHHHHH-----------HHHHHHCCCEE-----EC---CCCCEE
T ss_conf 299999999----99970489778999999868995799999-----------99999789989-----73---897776
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH----HHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 3213455467779999999997298389999997799999----9997414889998999999998289
Q gi|254781218|r 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST----LSNYEQGRTIPEIKPARKIKQVTKK 167 (205)
Q Consensus 103 ~~~~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~t----is~~E~g~~~Ps~~~l~kIa~~lgv 167 (205)
.+.+. ...+. .+...+.+-..-|.+.+|++... ..++| ...+.+...+|+..+|-
T Consensus 60 LT~~G----~~~A~---~i~r~hrl~e~fl~~~lg~~~~~~~~~A~~iE---H~is~~~~~~l~~~l~~ 118 (214)
T 3hrs_A 60 LTDLG----LKLVS---DLYRKHRLIEVFLVHHLGYTTEEIHEEAEVLE---HTVSDHFVERLDQLLDY 118 (214)
T ss_dssp ECHHH----HHHHH---HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---TTSCHHHHHHHHHHTTC
T ss_pred ECHHH----HHHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHCCHHHHHHHHHHHCC
T ss_conf 57879----99999---99999999999999984999899999998886---43799999999999489
No 366
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=37.35 E-value=18 Score=15.16 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99729838999999779999999974
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~E 147 (205)
.-..|++-+|.|+.+++|..|+..+-
T Consensus 208 ~~~~G~~~~eia~~l~is~~tv~~h~ 233 (258)
T 3clo_A 208 CIRKGLSSKEIAATLYISVNTVNRHR 233 (258)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99859999999989499999999999
No 367
>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=37.34 E-value=18 Score=15.16 Aligned_cols=39 Identities=10% Similarity=-0.078 Sum_probs=28.6
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 859988999998489999999887799888999999999
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la 80 (205)
-.++|-.++|+.+|||++++.+|=.++...=...+-...
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~Ll~~~~~~~~ 60 (170)
T 3egq_A 22 PHEVSIEEIAREAKVSKSLIFYHFESKQKLLEEAVMHAF 60 (170)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 240679999998489968706428999999999999999
No 368
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=36.94 E-value=14 Score=15.92 Aligned_cols=43 Identities=12% Similarity=-0.053 Sum_probs=30.7
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 8599889999984899999998877998889999999999828
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~ 84 (205)
-.++|-.++|+.+||+++++.+|=.++...=...+......+.
T Consensus 42 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~ 84 (214)
T 2oer_A 42 AQRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTT 84 (214)
T ss_dssp -CCCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 4517799999998909989998819999999999999999999
No 369
>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP}
Probab=35.74 E-value=19 Score=15.11 Aligned_cols=42 Identities=7% Similarity=-0.070 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 599889999984899999998877998889999999999828
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~ 84 (205)
.++|-.++|+.+|||++++.+|=.++...=...+......+.
T Consensus 41 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~ 82 (207)
T 3bjb_A 41 ARVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMVDQIDRMG 82 (207)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 527799999998909988613189999999999999999888
No 370
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=35.63 E-value=19 Score=15.00 Aligned_cols=46 Identities=17% Similarity=0.433 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHCCC-HHHHHH----HHCCC---------CCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 298389999997799-999999----74148---------89998999999998289999952
Q gi|254781218|r 125 KGMSQIEFGKLLGMP-NSTLSN----YEQGR---------TIPEIKPARKIKQVTKKHLDWIY 173 (205)
Q Consensus 125 ~glsq~elA~~lgis-~~tis~----~E~g~---------~~Ps~~~l~kIa~~lgvs~d~L~ 173 (205)
..+|+.++|+.+|++ +.++++ +++.+ ...+.+.|..+|..++ +|++
T Consensus 168 ~~~t~~~lA~~lg~s~r~~vsR~L~~L~~~giI~~~~~~i~I~D~~~Lk~~a~~~~---~~~~ 227 (238)
T 2bgc_A 168 DNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLD---EWFY 227 (238)
T ss_dssp SCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHCHHHH---HHHH
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHHHCH---HHHH
T ss_conf 47679999999689818899999999998897997699999888999999861050---4455
No 371
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=35.51 E-value=17 Score=15.35 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 99999999985998899999848999999988779988
Q gi|254781218|r 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 (205)
Q Consensus 33 G~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~ 70 (205)
+.++=.-+--.+.|-.++|+.+|+|++++.+|=.++..
T Consensus 16 A~~lf~~~G~~~~ti~~IA~~agvs~~tiY~~F~sK~~ 53 (186)
T 2jj7_A 16 AKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKEN 53 (186)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHH
T ss_conf 99999985914177999999869698899778789789
No 372
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=35.22 E-value=16 Score=15.45 Aligned_cols=29 Identities=14% Similarity=-0.128 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 59988999998489999999887799888
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
.+.|-.++|+.+||+++++.++=.++...
T Consensus 31 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L 59 (177)
T 3kkc_A 31 SKITVQDVIGLANVGRSTFYSHYESKEVL 59 (177)
T ss_dssp TTCCHHHHHHHHCCCHHHHTTTCSSTHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 40769999999797877743658988999
No 373
>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A
Probab=35.18 E-value=19 Score=15.01 Aligned_cols=36 Identities=8% Similarity=-0.040 Sum_probs=27.1
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
Q ss_conf 985998899999848999999988779988899999
Q gi|254781218|r 41 KANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 (205)
Q Consensus 41 ~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l 76 (205)
--.+.|-.++|..+|||+.++.++=.++...=...+
T Consensus 20 G~~~~tv~~IA~~aGvs~~tlY~hF~sKe~L~~a~~ 55 (207)
T 2vke_A 20 GIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALA 55 (207)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 914178999999979197699887899899999999
No 374
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=34.77 E-value=18 Score=15.20 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=16.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 838999999779999999974148899
Q gi|254781218|r 127 MSQIEFGKLLGMPNSTLSNYEQGRTIP 153 (205)
Q Consensus 127 lsq~elA~~lgis~~tis~~E~g~~~P 153 (205)
+|..|+|+.+|++..++.+|++.--.|
T Consensus 79 Yt~rEvAe~tGV~~e~~rr~wRalGfp 105 (222)
T 2ev1_A 79 VSAREISENYGVDLELLQRVQRAVGLA 105 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHCCC
T ss_pred ECHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 869999999791999999999981999
No 375
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=34.62 E-value=20 Score=14.89 Aligned_cols=41 Identities=12% Similarity=-0.151 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 59988999998489999999887799888999999999982
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
-+.|-.++|+.+|||+.++.+|=.++...=...+......+
T Consensus 31 ~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~av~~~~~~~~ 71 (196)
T 2qwt_A 31 LGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRRI 71 (196)
T ss_dssp TTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 78889999999694999998784899999999999999999
No 376
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=34.55 E-value=20 Score=14.89 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.0
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 997298389999997799999999741
Q gi|254781218|r 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 122 R~~~glsq~elA~~lgis~~tis~~E~ 148 (205)
....|+|-.|.|..+|||..|+..+-+
T Consensus 186 l~a~G~t~~eIA~~L~iS~~TV~~h~~ 212 (236)
T 2q0o_A 186 WASKGKTASVTANLTGINARTVQHYLD 212 (236)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 986699999999996999999999999
No 377
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=34.35 E-value=14 Score=15.81 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=16.6
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 972983899999977999999997
Q gi|254781218|r 123 KDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 123 ~~~glsq~elA~~lgis~~tis~~ 146 (205)
....++..|+|+.+|++++++|+-
T Consensus 68 ~~g~~tv~eLa~~l~is~stvS~H 91 (151)
T 3f6v_A 68 TSGEQTVNNLAAHFPASRSAISQH 91 (151)
T ss_dssp GGCCEEHHHHHTTSSSCHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 809938999999989199999999
No 378
>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A*
Probab=34.18 E-value=21 Score=14.85 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 599889999984899999998877998889999999999828
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~ 84 (205)
.+.|..++|+.+||+++++.+|=.++...=...+......+.
T Consensus 43 ~~~ti~~IA~~agvs~~tlY~yF~sK~~L~~~~~~~~~~~~~ 84 (216)
T 1t56_A 43 ADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQAD 84 (216)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 407899999883999999957639878999999999999999
No 379
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=34.18 E-value=21 Score=14.85 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 5998899999848999999988779988
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCS 70 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~ 70 (205)
.++|-.++|+.+||++.++.+|=.++..
T Consensus 58 ~~~T~~~Ia~~AGvs~~t~Y~~F~~K~~ 85 (214)
T 2guh_A 58 REITLKDIAEDAGVSAPLIIKYFGSKEQ 85 (214)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHH
T ss_conf 4077999999979198799998788999
No 380
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=33.89 E-value=7.5 Score=17.54 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHH-HHHCCCCHHHH---HHHHCCCHHHHHH
Q ss_conf 999999999999-99859988999---9984899999998
Q gi|254781218|r 28 YWKDVGTRIKDI-RKANNKTQKEM---AIGANQLESAVNL 63 (205)
Q Consensus 28 ~~~~iG~rik~l-R~~~gltQ~el---A~~~gis~~~is~ 63 (205)
...++-.++|.. |....+||++| |.++|+.+.+|-.
T Consensus 4 wse~ve~klkefv~rhq~itqe~lh~yaq~lgln~~ai~q 43 (52)
T 1y66_A 4 WSEEVERKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQ 43 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 7799999999999999997699999999983976999999
No 381
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=33.65 E-value=21 Score=14.80 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=21.5
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9729838999999779999999974
Q gi|254781218|r 123 KDKGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 123 ~~~glsq~elA~~lgis~~tis~~E 147 (205)
-..|+|-++.|+.+++|..|+..+-
T Consensus 161 l~~G~snkeIA~~L~iS~~TVk~h~ 185 (225)
T 3c3w_A 161 LSEGLTNKQIADRMFLAEKTVKNYV 185 (225)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9938988899999788799999999
No 382
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=33.29 E-value=21 Score=14.76 Aligned_cols=33 Identities=9% Similarity=0.262 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHC----CCCHHHHHHHH--CCCHH
Q ss_conf 99999999999999985----99889999984--89999
Q gi|254781218|r 27 QYWKDVGTRIKDIRKAN----NKTQKEMAIGA--NQLES 59 (205)
Q Consensus 27 ~~~~~iG~rik~lR~~~----gltQ~elA~~~--gis~~ 59 (205)
+....|-.-+...-... |+..++|...+ +++..
T Consensus 66 ~~~~~i~~~L~~~H~~~P~~~G~~~~eL~~~l~~~~~~~ 104 (258)
T 1lva_A 66 AWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPAR 104 (258)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHH
T ss_conf 999999999999999687767989999997623127899
No 383
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=33.11 E-value=20 Score=14.98 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 5998899999848999999988
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~ 64 (205)
.++|+.++|..++++++++++.
T Consensus 49 ~~~~~~~la~~l~~~ks~vs~~ 70 (250)
T 1p4x_A 49 NTLPFKKIVSDLCYKQSDLVQH 70 (250)
T ss_dssp SEEEHHHHHHHSSSCGGGTHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHH
T ss_conf 9978999999968881069999
No 384
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5}
Probab=32.99 E-value=21 Score=14.73 Aligned_cols=39 Identities=10% Similarity=-0.054 Sum_probs=28.2
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 859988999998489999999887799888999999999
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la 80 (205)
-.+.|-.++|+.+|||+.++.+|=.++...=...+-...
T Consensus 20 ~~~~t~~~Ia~~agvs~~tiY~~F~~K~~L~~a~~~~~~ 58 (179)
T 2eh3_A 20 YQGTSVEEIVKRANLSKGAFYFHFKSKEELITEIIERTH 58 (179)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 250769999998784965214428999999999999999
No 385
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=32.92 E-value=22 Score=14.72 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 59988999998489999999887799888999999999982
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
.+.|-.++|+.+|+++.++.+|=.++...=...+-.....+
T Consensus 32 ~~~t~~~IA~~aGvs~~tlY~~F~sK~~Ll~a~~~~~~~~~ 72 (231)
T 2qib_A 32 DEVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQRASDDL 72 (231)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 50779999999793988998884996899999999999999
No 386
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=32.71 E-value=22 Score=14.70 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHHHCCCHH
Q ss_conf 889998999999998289999
Q gi|254781218|r 150 RTIPEIKPARKIKQVTKKHLD 170 (205)
Q Consensus 150 ~~~Ps~~~l~kIa~~lgvs~d 170 (205)
...|+......||..+|++..
T Consensus 21 n~~Ps~~~~~~LA~~lgls~~ 41 (60)
T 3a02_A 21 THYPDVFTREELAMKIGLTEA 41 (60)
T ss_dssp CSSCCHHHHHHHHHHHTSCHH
T ss_pred CCCCCHHHHHHHHHHHCCCHH
T ss_conf 699799999999999198999
No 387
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=32.24 E-value=22 Score=14.65 Aligned_cols=17 Identities=0% Similarity=-0.208 Sum_probs=6.9
Q ss_pred CCCHHHHHHHHHHHCCC
Q ss_conf 99989999999982899
Q gi|254781218|r 152 IPEIKPARKIKQVTKKH 168 (205)
Q Consensus 152 ~Ps~~~l~kIa~~lgvs 168 (205)
.|+......||..+|++
T Consensus 25 yP~~~~r~~La~~l~l~ 41 (60)
T 1jgg_A 25 YVSRPRRCELAAQLNLP 41 (60)
T ss_dssp CCCHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHCCC
T ss_conf 98989999999990998
No 388
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=32.14 E-value=22 Score=14.64 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=8.8
Q ss_pred CCHHHHHHHHCCCHHHHHH
Q ss_conf 9889999984899999998
Q gi|254781218|r 45 KTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 45 ltQ~elA~~~gis~~~is~ 63 (205)
.|..+||+.+|++...|++
T Consensus 32 ~tA~~LAk~lg~~Kk~vN~ 50 (77)
T 1qgp_A 32 TTAHDLSGKLGTPKKEINR 50 (77)
T ss_dssp EEHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHH
T ss_conf 0299999996988888899
No 389
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=31.88 E-value=22 Score=14.62 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=18.2
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 729838999999779999999974148
Q gi|254781218|r 124 DKGMSQIEFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 124 ~~glsq~elA~~lgis~~tis~~E~g~ 150 (205)
..-||..|.|+.+||+.+++.++-...
T Consensus 14 K~~LTi~EAa~Y~gIg~~klr~L~~e~ 40 (70)
T 1y6u_A 14 RYTLTIEEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp SSEEEHHHHHHHTCSCHHHHHHHHHHC
T ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 100389999999692799999999848
No 390
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=31.75 E-value=19 Score=15.04 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=29.2
Q ss_pred HHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9999998--5998899999848999999988779988899999999
Q gi|254781218|r 36 IKDIRKA--NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 (205)
Q Consensus 36 ik~lR~~--~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~l 79 (205)
++.+.+. .+.|-.++|+.+|||++++.+|=.++-..=...+-..
T Consensus 22 ~~lf~~~G~~~~t~~~Ia~~agvs~~tlY~~F~~Ke~L~~~~~~~~ 67 (205)
T 1rkt_A 22 KTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETG 67 (205)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999974915187999999868985741157899999999999999
No 391
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=31.42 E-value=23 Score=14.57 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=24.4
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 8599889999984899999998877998
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMC 69 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~ 69 (205)
-.+.|-.++|+.+|||++++.+|=.++.
T Consensus 23 ~~~~t~~~Ia~~agvs~~tlY~~F~sKe 50 (228)
T 3nnr_A 23 ERNITTNHIAAHLAISPGNLYYHFRNKS 50 (228)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 3527799999988909989998878999
No 392
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=30.39 E-value=24 Score=14.46 Aligned_cols=37 Identities=14% Similarity=-0.058 Sum_probs=27.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 9999999998599889999984899999998877998
Q gi|254781218|r 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 (205)
Q Consensus 33 G~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~ 69 (205)
+.++=.-+--.+.|-.++|+.+|||+.++.+|=.++.
T Consensus 57 A~~lf~e~G~~~vS~~~IA~~AGVS~~t~Y~~F~sK~ 93 (260)
T 2of7_A 57 TYGLIRQQGYEATTVEQIAERAEVSPSTVLRYFPTRE 93 (260)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 9999998394528799999996967979999859999
No 393
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=30.32 E-value=15 Score=15.71 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=23.6
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 8599889999984899999998877998
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMC 69 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~ 69 (205)
-.++|-.++|+.+||++++|.+|=.++.
T Consensus 37 ~~~~T~~~IA~~aGvs~~tlY~hF~sKe 64 (243)
T 2g7l_A 37 LEKVTMRRLAQELDTGPASLYVYVANTA 64 (243)
T ss_dssp SSSCCHHHHHHHTTSCHHHHTTTCCSHH
T ss_pred CCCCCHHHHHHHHCCCCCCCHHCCCCHH
T ss_conf 4307899999986899553200390989
No 394
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406}
Probab=30.28 E-value=20 Score=14.92 Aligned_cols=51 Identities=12% Similarity=-0.016 Sum_probs=35.1
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
Q ss_conf 859988999998489999999887799888999999999982899999614
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ 92 (205)
-.+.|-.++|+.+|||++++.+|=.++...=...+....+.+.-.++..+.
T Consensus 29 ~~~~s~~~IA~~aGvs~~tlY~yF~sK~~L~~a~~~~~~~~~~~~~~~~~~ 79 (216)
T 3f0c_A 29 LCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILN 79 (216)
T ss_dssp SSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 030789999998598852798757999999999899899999999999984
No 395
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.24 E-value=17 Score=15.38 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 99889999984899999998877998
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLFENGMC 69 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~E~G~~ 69 (205)
+.|-.++|+.+|||+.++.+|=.++.
T Consensus 29 ~~S~~~IA~~aGvs~~tlY~yF~sKe 54 (213)
T 2g7g_A 29 DFRMPDLARHLNVQVSSIYHHAKGRA 54 (213)
T ss_dssp SCCHHHHHHHTTSCHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 86299999996968778998879989
No 396
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=30.14 E-value=24 Score=14.44 Aligned_cols=41 Identities=5% Similarity=-0.057 Sum_probs=29.6
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 98599889999984899999998877998889999999999
Q gi|254781218|r 41 KANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 (205)
Q Consensus 41 ~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~ 81 (205)
--.+.|-.++|+.+|+|+.++.+|=.++...=...+.....
T Consensus 47 G~~~~si~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~~ 87 (222)
T 3bru_A 47 GYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDT 87 (222)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 90407799999986899026988569899999999999999
No 397
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription factor, alternative splicing, developmental protein; 2.6A {Mus musculus}
Probab=30.10 E-value=24 Score=14.43 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=7.7
Q ss_pred HHHHHHCCCHHHHHHHHC
Q ss_conf 999997799999999741
Q gi|254781218|r 131 EFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 131 elA~~lgis~~tis~~E~ 148 (205)
+||+.+|++...|.-|-.
T Consensus 35 ~LA~~lgl~~~qV~~WFq 52 (62)
T 2vi6_A 35 ELSSILNLSYKQVKTWFQ 52 (62)
T ss_dssp HHHHHHTCCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHCCH
T ss_conf 999991988778232255
No 398
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=29.93 E-value=24 Score=14.41 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=6.3
Q ss_pred HHHHHHCCCHHHHHHHH
Q ss_conf 99999779999999974
Q gi|254781218|r 131 EFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 131 elA~~lgis~~tis~~E 147 (205)
+||..+|++...|.-|-
T Consensus 32 ~LA~~l~l~~~~V~~WF 48 (58)
T 1ig7_A 32 EFSSSLSLTETQVKIWF 48 (58)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
T ss_conf 99999596988866971
No 399
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=29.76 E-value=24 Score=14.40 Aligned_cols=49 Identities=12% Similarity=-0.043 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 6689999999999999999859988999998489999999887799888
Q gi|254781218|r 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 23 ~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
++.++.--+.+.++=.-+--.+.|-.++|+.+|||++++.+|=.++...
T Consensus 14 ~~rr~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~L 62 (221)
T 3c2b_A 14 SPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGL 62 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 1999999999999999759130779999999794988999887999999
No 400
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=29.70 E-value=23 Score=14.58 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999999998599889999984899999998877998889999999999
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~ 81 (205)
.+..+=.-+--.+.|-.++|+++|||+.++.+|=.++-..=...+.....
T Consensus 38 aA~~lf~~~G~~~~si~~IA~~Agvs~~tiY~yF~sKe~L~~~v~~~~~~ 87 (230)
T 2iai_A 38 VAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALD 87 (230)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999998592627299999985829101530589999999999999999
No 401
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.62 E-value=24 Score=14.38 Aligned_cols=32 Identities=0% Similarity=-0.117 Sum_probs=25.9
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 99859988999998489999999887799888
Q gi|254781218|r 40 RKANNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 40 R~~~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
+--.+.|-.++|+++|+++.++.+|=.++...
T Consensus 27 ~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L 58 (202)
T 2i10_A 27 QGYEGTSITDLTKALGINPPSLYAAFGSKRDL 58 (202)
T ss_dssp HTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 69140769999999790999997761899999
No 402
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=29.60 E-value=24 Score=14.38 Aligned_cols=31 Identities=3% Similarity=-0.050 Sum_probs=26.0
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 9985998899999848999999988779988
Q gi|254781218|r 40 RKANNKTQKEMAIGANQLESAVNLFENGMCS 70 (205)
Q Consensus 40 R~~~gltQ~elA~~~gis~~~is~~E~G~~~ 70 (205)
.--.+.|-.++|+.+||++.+|.+|=.++..
T Consensus 22 ~G~~~~T~~~IA~~aGVs~~~lY~hF~sK~~ 52 (234)
T 2opt_A 22 EGLDALSMRRLAQELKTGHASLYAHVGNRDE 52 (234)
T ss_dssp HCGGGCCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHCCCHHH
T ss_conf 2944278999999978588899998798899
No 403
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=29.48 E-value=25 Score=14.37 Aligned_cols=44 Identities=9% Similarity=-0.078 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999999985998899999848999999988779988899999
Q gi|254781218|r 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 (205)
Q Consensus 33 G~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l 76 (205)
+.++=.-+--.+.|-.++|+.+|+++.++.+|=.++...=...+
T Consensus 16 A~~l~~~~G~~~~t~~~IA~~aGvs~~~lY~yF~sK~~Ll~av~ 59 (235)
T 2fbq_A 16 AEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVF 59 (235)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 99999985904077999999979398899998599999999999
No 404
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=29.17 E-value=25 Score=14.33 Aligned_cols=52 Identities=6% Similarity=-0.163 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999999998599889999984899999998877998889999999999828
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~ 84 (205)
.+.++=.-+- -+.|-.++|+.+|+|+.++.+|=.++-..=...+......+.
T Consensus 24 aA~~l~~~~G-~~~T~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~~ 75 (199)
T 2rek_A 24 AAAAEVARHG-ADASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQLC 75 (199)
T ss_dssp HHHHHHHHHG-GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999869-788899999997919999987758998899999999999889
No 405
>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=28.96 E-value=25 Score=14.31 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 999999999985---99889999984899999998877998
Q gi|254781218|r 32 VGTRIKDIRKAN---NKTQKEMAIGANQLESAVNLFENGMC 69 (205)
Q Consensus 32 iG~rik~lR~~~---gltQ~elA~~~gis~~~is~~E~G~~ 69 (205)
|=+--.++=..+ ++|-.++|+.+|||+.++.++=.++.
T Consensus 18 Il~Aa~~l~~~~G~~~~Tv~~Ia~~agvs~~t~Y~yF~sKe 58 (195)
T 2iu5_A 18 IAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQE 58 (195)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 99999999997696306899999986888617988773999
No 406
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=28.95 E-value=18 Score=15.28 Aligned_cols=92 Identities=13% Similarity=0.179 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC---CC
Q ss_conf 566899999999999999998599889999984899999998877998889999999999828999996145322---10
Q gi|254781218|r 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI---DR 98 (205)
Q Consensus 22 ~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~---~~ 98 (205)
+.+-+..|..|-..+ ...-.+-++||+.+|+....+-. .|-.+++. |... +.
T Consensus 2 s~~~q~~w~~ie~~~----~~~Pp~v~dla~~l~~d~~~~~~-----------~L~~l~~~----------G~lv~i~~~ 56 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLF----GDEPWWVRDLAKETGTDEQAMRL-----------TLRQAAQQ----------GIITAIVKD 56 (121)
T ss_dssp CHHHHHHHHHHGGGC----SSSCEEHHHHHHHTTCCHHHHHH-----------HHHHHHHT----------TSEEEEETT
T ss_pred CHHHHHHHHHHHHHH----CCCCCCHHHHHHHHCCCHHHHHH-----------HHHHHHHC----------CEEEEECCC
T ss_conf 989999999999987----46999899999897949999999-----------99999989----------958995299
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHH
Q ss_conf 0002321345546777999999999-72983899999977999999
Q gi|254781218|r 99 RYEDVTNKKRLDPYAIGARLKSIRK-DKGMSQIEFGKLLGMPNSTL 143 (205)
Q Consensus 99 ~~~~~~~~~~~d~~~iG~rLk~lR~-~~glsq~elA~~lgis~~ti 143 (205)
.+..-... ..+...++.+-. .-.++..+|-+.+|+|+...
T Consensus 57 ~y~~~~~~-----~~~~~~~~~~~~~~~~itva~~Rd~~g~sRK~a 97 (121)
T 2pjp_A 57 RYYRNDRI-----VEFANMIRDLDQECGSTCAADFRDRLGVGRKLA 97 (121)
T ss_dssp EEEEHHHH-----HHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHH
T ss_pred EEEEHHHH-----HHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHH
T ss_conf 88858999-----999999999998779771999999968309999
No 407
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A
Probab=28.94 E-value=9 Score=17.06 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=21.9
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999729838999999779999999974
Q gi|254781218|r 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 120 ~lR~~~glsq~elA~~lgis~~tis~~E 147 (205)
.++--.|+|..|.|+.+|++..++..+.
T Consensus 145 ~l~~~~g~s~~eIA~~lgis~~tV~~~l 172 (184)
T 2q1z_A 145 ERAFFGDLTHRELAAETGLPLGTIKSRI 172 (184)
T ss_dssp HHHHHSCCSSCCSTTTCCCCCHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999929999999999893999999999
No 408
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=28.77 E-value=25 Score=14.29 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=17.0
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 729838999999779999999974
Q gi|254781218|r 124 DKGMSQIEFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 124 ~~glsq~elA~~lgis~~tis~~E 147 (205)
...++-.|+++.+|++++++|+..
T Consensus 57 ~~~~~v~ela~~l~~s~stvS~HL 80 (122)
T 1r1t_A 57 RSELCVGDLAQAIGVSESAVSHQL 80 (122)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 299769999999891988899999
No 409
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=28.71 E-value=25 Score=14.28 Aligned_cols=41 Identities=7% Similarity=-0.119 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 59988999998489999999887799888999999999982
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
.++|-.++|+++||+++++.+|=.++...=...+......+
T Consensus 36 ~~~ti~~IA~~agvs~~t~Y~yF~sKe~L~~~~~~~~~~~~ 76 (206)
T 3kz9_A 36 GRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQF 76 (206)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 41779999998790998996980999999999999889999
No 410
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=28.51 E-value=17 Score=15.36 Aligned_cols=52 Identities=12% Similarity=-0.054 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999859988999998489999999887799888999999999982
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
-+.++=.-.--.++|-.++|+.+|+|+.++.+|=.++...=...+..+...+
T Consensus 20 aA~~l~~~~G~~~~t~~~IA~~aGvs~~~ly~~F~sK~~L~~a~~~~~~~~~ 71 (200)
T 2hyj_A 20 RAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDF 71 (200)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999739151889999998781978895544899999999999999999
No 411
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=28.31 E-value=17 Score=15.42 Aligned_cols=18 Identities=0% Similarity=-0.068 Sum_probs=9.1
Q ss_pred HHHHHHHHHCCCHHHHHC
Q ss_conf 999999982899999614
Q gi|254781218|r 75 YALYLRNEYEISFDWIYD 92 (205)
Q Consensus 75 ~l~~la~~~~vs~d~Ll~ 92 (205)
+|..||+.|+|+++.|..
T Consensus 12 Tl~~IA~~y~vs~~~i~~ 29 (48)
T 1e0g_A 12 SLSSIAKRHGVNIKDVMR 29 (48)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHH
T ss_conf 999999998968999998
No 412
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Enterococcus faecalis V583} SCOP: a.4.1.9 a.121.1.1
Probab=28.12 E-value=21 Score=14.80 Aligned_cols=48 Identities=8% Similarity=0.020 Sum_probs=31.4
Q ss_pred HHHHHHHH---HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999999---8599889999984899999998877998889999999999
Q gi|254781218|r 34 TRIKDIRK---ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 (205)
Q Consensus 34 ~rik~lR~---~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~ 81 (205)
.=++-+-+ -.+.|-.++|..+||++.+|.+|=.++...=...+-.+..
T Consensus 13 aA~~lf~~~~G~~~~T~~~IA~~aGvs~~~lY~hF~sKe~L~~av~~~~~~ 63 (220)
T 1z0x_A 13 AAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEE 63 (220)
T ss_dssp HHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999880895316799999996967878999969999999999999987
No 413
>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A*
Probab=28.03 E-value=26 Score=14.21 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 668999999999999999985998899999848999999988779988899999999998289999961
Q gi|254781218|r 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 (205)
Q Consensus 23 ~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll 91 (205)
+..++.--+-+.++=.-.--.+.|-.++|+++|+|+.+|.+|=.++...=...+......+.-.++..+
T Consensus 15 ~~~Re~Il~aA~~lf~~~G~~~~si~~Ia~~agvs~~tiy~yF~sK~~L~~~~~~~~~~~~~~~~~~~~ 83 (213)
T 2qtq_A 15 PGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDALL 83 (213)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 689999999999999973934178999999979499999998798999999899999999999999876
No 414
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=27.99 E-value=26 Score=14.21 Aligned_cols=33 Identities=6% Similarity=-0.031 Sum_probs=26.0
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 98599889999984899999998877998889999999999828
Q gi|254781218|r 41 KANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 (205)
Q Consensus 41 ~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~ 84 (205)
....+|..+||+.+|+++++++ .+|..|+++-=
T Consensus 30 ~~~~~t~~ela~~l~~s~~~v~-----------~HL~~L~~~Gl 62 (192)
T 1uly_A 30 RNKEMTISQLSEILGKTPQTIY-----------HHIEKLKEAGL 62 (192)
T ss_dssp TTCCBCHHHHHHHHTCCHHHHH-----------HHHHHHHHTTS
T ss_pred HHCCCCHHHHHHHHCCCHHHHH-----------HHHHHHHHCCC
T ss_conf 8299679999999891988999-----------99999988898
No 415
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=27.81 E-value=26 Score=14.18 Aligned_cols=45 Identities=7% Similarity=-0.003 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
Q ss_conf 999999999998599889999984899999998877998889999
Q gi|254781218|r 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 (205)
Q Consensus 31 ~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~ 75 (205)
+-+.++=.-+--.++|-.++|..+|||+.++.+|=.++...-...
T Consensus 9 ~AA~~l~~~~G~~~~T~~~IA~~aGvs~~tlY~~F~sK~~L~~a~ 53 (209)
T 3bqy_A 9 QTALDLLNESGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTAM 53 (209)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
T ss_conf 999999997294516799999997948879998879989999999
No 416
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ...
Probab=27.35 E-value=27 Score=14.13 Aligned_cols=47 Identities=6% Similarity=-0.132 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999985998899999848999999988779988899999999
Q gi|254781218|r 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 (205)
Q Consensus 33 G~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~l 79 (205)
+.++=.-+--.+.|-.++|+.+|+|+.++.+|=.++...=...+...
T Consensus 11 A~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 57 (194)
T 3bqz_B 11 AKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIE 57 (194)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999976933067999999979099988143789999999999998
No 417
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=27.25 E-value=27 Score=14.12 Aligned_cols=31 Identities=3% Similarity=-0.203 Sum_probs=25.8
Q ss_pred HCCCCHHHHHHHH------CCCHHHHHHHHCCCCCCC
Q ss_conf 8599889999984------899999998877998889
Q gi|254781218|r 42 ANNKTQKEMAIGA------NQLESAVNLFENGMCSTS 72 (205)
Q Consensus 42 ~~gltQ~elA~~~------gis~~~is~~E~G~~~ps 72 (205)
..-++|+++|..+ +.+..++.+|++|...|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (482)
T 3me5_A 27 LQIYDVKMLVAQLNGVGENHWSAAILKRALANDSAWH 63 (482)
T ss_dssp HTTSCHHHHHHHHHHTCSSCCCHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 9873399999997512666667888999862788885
No 418
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=27.21 E-value=27 Score=14.12 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=7.2
Q ss_pred HHHHHHCCCHHHHHHHHC
Q ss_conf 999997799999999741
Q gi|254781218|r 131 EFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 131 elA~~lgis~~tis~~E~ 148 (205)
+||..+|++...|..|-.
T Consensus 33 ~LA~~lgl~~~~V~~WFq 50 (67)
T 2k40_A 33 DLAQKLNLELDRIQIWFQ 50 (67)
T ss_dssp HHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHCCH
T ss_conf 999994959889558169
No 419
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=26.19 E-value=28 Score=14.00 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=50.4
Q ss_pred HHHCCCCHHHHHHHH-------CCCHHHHHHHH----CCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 998599889999984-------89999999887----7998889999999999828999996145322100002321345
Q gi|254781218|r 40 RKANNKTQKEMAIGA-------NQLESAVNLFE----NGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 (205)
Q Consensus 40 R~~~gltQ~elA~~~-------gis~~~is~~E----~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~ 108 (205)
.-..|.|..|.|+.+ ++|.++|.+|- .|.... ....-. .....
T Consensus 18 ~~~~g~~~~e~~~~l~~~~~~~~is~~TV~rw~~~~~~g~~~l--------------------~~~~r~------grp~~ 71 (345)
T 3hot_A 18 CFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDV--------------------DDKEHG------KPPKR 71 (345)
T ss_dssp HHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTTCCCCC--------------------SCCCCC------CCCCS
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC--------------------CCCCCC------CCCCC
T ss_conf 9985999999999999874678887889999999996578666--------------------769999------88985
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 546777999999999729838999999779999999974148
Q gi|254781218|r 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 109 ~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~ 150 (205)
.+.. ...+-+......+..+++..+++|.+|+.++....
T Consensus 72 ~~~~---~~~~~i~~~~~~s~~~i~~~l~~S~~tV~r~l~~~ 110 (345)
T 3hot_A 72 YEDA---ELQALLDEDDAQTQKQLAEQLEVSQQAVSNRLREM 110 (345)
T ss_dssp SCHH---HHHHHHHHCSCCCHHHHHHHTTSCHHHHHHHHHHT
T ss_pred CCHH---HHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 7439---99998861887669999988098999999999974
No 420
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=25.71 E-value=29 Score=13.95 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 899999999998289999961453221000023213455467779999999-9972983899999977999999997414
Q gi|254781218|r 71 TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI-RKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 71 psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~d~~~iG~rLk~l-R~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
...+.+..||.+|+ |...-.+ +.. ......|=+++ ++-.|.+..+||..-|+|..++.++-..
T Consensus 52 ~a~~l~~~L~~~~G--------G~~iYiP-----k~~---~~~~~~Rn~~I~~ef~G~n~~eLArkY~LS~r~I~~Ii~~ 115 (129)
T 1rr7_A 52 HSLEIVVAICKHLG--------GGQVYIP-----RGQ---ALDSLIRDLRIWNDFNGRNVSELTTRYGVTFNTVYKAIRR 115 (129)
T ss_dssp SHHHHHHHHHHHHC--------SSCCCCC-----CSH---HHHHHHHHHHHHHHCCSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--------CEEEEEE-----CCH---HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999969--------9468855-----844---8899999999999908998999999989789999999999
No 421
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=25.59 E-value=29 Score=13.94 Aligned_cols=59 Identities=7% Similarity=-0.008 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHH-HH---CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 8999999999999999-98---59988999998489999999887799888999999999982
Q gi|254781218|r 25 IRQYWKDVGTRIKDIR-KA---NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 25 ~~~~~~~iG~rik~lR-~~---~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
.......|-+=...+- +. .+.|-.++|+.+|||++++.++=.++...=...+....+.+
T Consensus 17 ~~~Tk~~i~~a~~~Lf~~~kG~~~~Sv~dIa~~AgVs~~t~Y~~F~sK~~L~~~v~~~~~~~~ 79 (185)
T 3o60_A 17 TQKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEIIQVIEVQILRTMQYF 79 (185)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999988089310879999998788866622346989999999999999999
No 422
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=25.58 E-value=29 Score=13.94 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 9999999999999999859988999998489999999887799888
Q gi|254781218|r 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 26 ~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
++.--+.+.++=.-+--.+.|-.++|+.+|+|++++.+|=.++...
T Consensus 5 R~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~tiY~~F~sKe~L 50 (189)
T 3geu_A 5 KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSI 50 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 9999999999999759364869999998790998870008989999
No 423
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=25.56 E-value=29 Score=13.93 Aligned_cols=18 Identities=0% Similarity=-0.042 Sum_probs=7.2
Q ss_pred CCCCHHHHHHHHHHHCCC
Q ss_conf 899989999999982899
Q gi|254781218|r 151 TIPEIKPARKIKQVTKKH 168 (205)
Q Consensus 151 ~~Ps~~~l~kIa~~lgvs 168 (205)
..|+......||..+|++
T Consensus 25 ~yPs~~~r~~LA~~lgl~ 42 (68)
T 1ftt_A 25 KYLSAPEREHLASMIHLT 42 (68)
T ss_dssp SSCCHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHCCC
T ss_conf 997999999999981988
No 424
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.35 E-value=29 Score=13.91 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=20.9
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 999972983899999977999999997414
Q gi|254781218|r 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 120 ~lR~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
.+++..|+|..|+|..+.-|+..+.+|.+.
T Consensus 15 DVm~~L~~slhemaR~i~rSR~~ir~Yl~~ 44 (51)
T 1tc3_C 15 DVMKLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999994876999999998859999999569
No 425
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3}
Probab=25.30 E-value=29 Score=13.90 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=24.0
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 85998899999848999999988779988
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFENGMCS 70 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E~G~~~ 70 (205)
-.++|-.++|+.+||+..++.+|=.++..
T Consensus 47 ~~~~t~~~IA~~aGVs~~tlY~yF~sKe~ 75 (241)
T 2hxi_A 47 AETFSVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp CCCCCHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHH
T ss_conf 13053999999979088899998799999
No 426
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=25.25 E-value=29 Score=13.90 Aligned_cols=54 Identities=7% Similarity=-0.102 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 999999999999999985998899999848999999988779988899999999
Q gi|254781218|r 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 (205)
Q Consensus 26 ~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~l 79 (205)
++--.+.+..+=.-+--.+.|-.++|+++|+|++++.+|=.++...=...+...
T Consensus 15 R~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~ 68 (217)
T 3nrg_A 15 RSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLG 68 (217)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGGTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999999973924077999999858882358886489999999999999
No 427
>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.18 E-value=29 Score=13.89 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 89999999999999999859988999998489999999887799888
Q gi|254781218|r 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 25 ~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
.++.--+.+.++=.-+--.+.|-.++|+.+||++.++.+|=.++...
T Consensus 9 tr~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~yF~sKe~L 55 (206)
T 3dew_A 9 CRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGL 55 (206)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 99999999999999859241789999999695988998881899999
No 428
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=25.10 E-value=29 Score=13.88 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCC--------CHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 999999997298--------389999997799999999741488
Q gi|254781218|r 116 ARLKSIRKDKGM--------SQIEFGKLLGMPNSTLSNYEQGRT 151 (205)
Q Consensus 116 ~rLk~lR~~~gl--------sq~elA~~lgis~~tis~~E~g~~ 151 (205)
+.|+..-+..++ ...+||+.+|+++..|.-|-..++
T Consensus 30 ~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~v~vWF~N~R 73 (80)
T 1wh5_A 30 ERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNK 73 (80)
T ss_dssp HHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHEEEECCCCC
T ss_conf 99999999842445698999999999997898889434464477
No 429
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=25.01 E-value=30 Score=13.87 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHC------CC-CHHHHHHHHCCCHHHHHH
Q ss_conf 999999999999985------99-889999984899999998
Q gi|254781218|r 29 WKDVGTRIKDIRKAN------NK-TQKEMAIGANQLESAVNL 63 (205)
Q Consensus 29 ~~~iG~rik~lR~~~------gl-tQ~elA~~~gis~~~is~ 63 (205)
|..|.+.|+..=... .| +..+||+.+|||+.+|.+
T Consensus 6 Y~qI~~~I~~~I~~g~~~pG~~LPse~~La~~~gVSr~tVR~ 47 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARN 47 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999999999859999969987899999892999999999
No 430
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=24.91 E-value=12 Score=16.19 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHCCC----CCCCHHHHHHHHH
Q ss_conf 89999999887799----8889999999999
Q gi|254781218|r 55 NQLESAVNLFENGM----CSTSIRYALYLRN 81 (205)
Q Consensus 55 gis~~~is~~E~G~----~~psi~~l~~la~ 81 (205)
++.+.-+||++.|. ..|+.++.+.|.+
T Consensus 243 ~l~~rL~SRf~~Gl~~~I~~Pd~etr~~IL~ 273 (440)
T 2z4s_A 243 EFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCEEEECCCCHHHHHHHHH
T ss_conf 6237888898679704216899899999999
No 431
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=24.70 E-value=30 Score=13.83 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHH
Q ss_conf 599889999984899999998
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~ 63 (205)
..+|..++|+.+|+++++||+
T Consensus 30 ~~~~v~ela~~l~~s~~tvS~ 50 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMK 50 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
T ss_conf 994799999998919999999
No 432
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102}
Probab=24.44 E-value=30 Score=13.80 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=19.4
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 859988999998489999999887
Q gi|254781218|r 42 ANNKTQKEMAIGANQLESAVNLFE 65 (205)
Q Consensus 42 ~~gltQ~elA~~~gis~~~is~~E 65 (205)
....|-++||+++|+.+..+.+|=
T Consensus 37 ~g~~t~~eLA~~~g~~~~~l~~lL 60 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTSERGMRMLC 60 (335)
T ss_dssp TSEECHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 799999999977197999999999
No 433
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3}
Probab=24.13 E-value=31 Score=13.77 Aligned_cols=48 Identities=13% Similarity=-0.008 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 689999999999999999859988999998489999999887799888
Q gi|254781218|r 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 24 ~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
+-++--.+-+.++=.-+--.++|-.++|+.+|||+.++.+|=.++...
T Consensus 7 ~tr~~Il~AA~~l~~~~G~~~~tl~~IA~~agvs~~t~Y~~F~sKe~L 54 (195)
T 2dg7_A 7 GAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREV 54 (195)
T ss_dssp THHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGG
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 699999999999999859040669999999790988997777999999
No 434
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Pyrococcus horikoshii OT3}
Probab=23.97 E-value=31 Score=13.75 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 899999999998289999961453221000023213455-4677799999999972983899999977999999997
Q gi|254781218|r 71 TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRL-DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 71 psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~~~~-d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~ 146 (205)
..=..+..||+.++++-+ ++.-.....-...+.....+ -+...=..+-....+.+++..++++.+|++...+.++
T Consensus 156 L~K~eVr~La~~Lglp~~-ii~r~Psp~L~~~q~de~~lg~~Y~~lD~~l~~~~~~~~~~~~i~~~~g~~~~~v~~i 231 (257)
T 2e18_A 156 LYKTEVWEIAKRIGVPER-IVKKKPSAGLWEGQTDEDELGISYNLLDEILWRMIDLKIGKEEIAKDLGIPLSLVERV 231 (257)
T ss_dssp SCHHHHHHHHHHHTCCHH-HHHSCCCCCSSTTCCHHHHHTSCHHHHHHHHHHHHTSCCCHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHH-HHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 849999999998499968-8606999655679985431387779999999999874999999998969599999999
No 435
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=23.74 E-value=31 Score=13.72 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=6.9
Q ss_pred HHHHHHCCCHHHHHHHH
Q ss_conf 99999779999999974
Q gi|254781218|r 131 EFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 131 elA~~lgis~~tis~~E 147 (205)
+||..+|++...|..|-
T Consensus 33 ~La~~~gL~~~qV~~WF 49 (60)
T 1k61_A 33 NLMKNTSLSRIQIKNWV 49 (60)
T ss_dssp HHHHHHCCCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
T ss_conf 99999880999999988
No 436
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=23.54 E-value=29 Score=13.89 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=11.6
Q ss_pred HHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 8999999779999999974148
Q gi|254781218|r 129 QIEFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 129 q~elA~~lgis~~tis~~E~g~ 150 (205)
..+||..+|++...|..|-..+
T Consensus 47 ~~~LA~~lgl~~~~I~~WF~Nr 68 (80)
T 2da3_A 47 LDHIAHEVGLKKRVVQVWFQNT 68 (80)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999790999958956988
No 437
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.42 E-value=28 Score=14.05 Aligned_cols=20 Identities=0% Similarity=-0.006 Sum_probs=9.9
Q ss_pred HHHHHHHCCCHHHHHHHHCC
Q ss_conf 99999977999999997414
Q gi|254781218|r 130 IEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 130 ~elA~~lgis~~tis~~E~g 149 (205)
.+||+.+|++...|..|-..
T Consensus 42 ~~LA~~~gl~~~~V~~WFqN 61 (89)
T 2ecb_A 42 NRLRAQTKLTRREIDAWFTE 61 (89)
T ss_dssp HHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
T ss_conf 99999988199999980899
No 438
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.23 E-value=32 Score=13.66 Aligned_cols=21 Identities=5% Similarity=0.012 Sum_probs=10.7
Q ss_pred HHHHHHHCCCHHHHHHHHCCC
Q ss_conf 999999779999999974148
Q gi|254781218|r 130 IEFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 130 ~elA~~lgis~~tis~~E~g~ 150 (205)
.+||+.+|++...|..|-...
T Consensus 41 ~~La~~~gl~~~qV~~WF~N~ 61 (73)
T 1x2n_A 41 KQIAAQTNLTLLQVNNWFINA 61 (73)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999881999989989999
No 439
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.16 E-value=15 Score=15.61 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=5.6
Q ss_pred HHHHHHHHCCCHHHH
Q ss_conf 999999828999996
Q gi|254781218|r 76 ALYLRNEYEISFDWI 90 (205)
Q Consensus 76 l~~la~~~~vs~d~L 90 (205)
|..||..|+|+++.|
T Consensus 26 L~~IA~~y~v~~~~i 40 (77)
T 2djp_A 26 LAGLALKYGVTMEQI 40 (77)
T ss_dssp HHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999988899999
No 440
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=23.14 E-value=32 Score=13.65 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHHHHCCCHH
Q ss_conf 9998999999998289999
Q gi|254781218|r 152 IPEIKPARKIKQVTKKHLD 170 (205)
Q Consensus 152 ~Ps~~~l~kIa~~lgvs~d 170 (205)
.|+.+....||+.+|++..
T Consensus 28 YPs~~~~~~La~~~~ls~~ 46 (73)
T 1puf_B 28 YPSEEAKEELAKKCGITVS 46 (73)
T ss_dssp CCCHHHHHHHHHHHTSCHH
T ss_pred CCCHHHHHHHHHHHCCCHH
T ss_conf 9899999999999882999
No 441
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=23.08 E-value=32 Score=13.64 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHC------CC-CHHHHHHHHCCCHHHHHH
Q ss_conf 9999999999999985------99-889999984899999998
Q gi|254781218|r 28 YWKDVGTRIKDIRKAN------NK-TQKEMAIGANQLESAVNL 63 (205)
Q Consensus 28 ~~~~iG~rik~lR~~~------gl-tQ~elA~~~gis~~~is~ 63 (205)
.+..|...|+..=..- .| |..+||+.+|||+++|.+
T Consensus 12 ~y~qi~~~i~~~I~~g~l~~G~~LPser~La~~~~vSr~tVr~ 54 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAK 54 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999999999999859999929990499999997989899999
No 442
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=22.95 E-value=32 Score=13.62 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHHH----HHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 5668999999999999----99998599889999984899999998
Q gi|254781218|r 22 TPEIRQYWKDVGTRIK----DIRKANNKTQKEMAIGANQLESAVNL 63 (205)
Q Consensus 22 ~~~~~~~~~~iG~rik----~lR~~~gltQ~elA~~~gis~~~is~ 63 (205)
..+.....+-+|...| .+-....+|-.++|+.+|+|++++++
T Consensus 2 ~~~~~~~~~al~~~~R~~Il~~L~~~~~~~~ela~~l~is~~~v~~ 47 (202)
T 2p4w_A 2 GEELNRLLDVLGNETRRRILFLLTKRPYFVSELSRELGVGQKAVLE 47 (202)
T ss_dssp CHHHHHHHHHHHSHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 1799999998599999999999973999899999998909989999
No 443
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=22.93 E-value=32 Score=13.62 Aligned_cols=36 Identities=6% Similarity=-0.035 Sum_probs=26.9
Q ss_pred HHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 9999998--59988999998489999999887799888
Q gi|254781218|r 36 IKDIRKA--NNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 36 ik~lR~~--~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
++.+.+. .+.|-.++|+.+|++++++.+|=.++...
T Consensus 17 ~~lf~e~G~~~~s~~~IA~~AGvs~~~iy~yF~sK~~L 54 (213)
T 3ni7_A 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213)
T ss_dssp HHHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCH
T ss_conf 99999869768789999999099999998746997521
No 444
>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444}
Probab=22.83 E-value=33 Score=13.61 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 99999999999999998599889999984899999998877998
Q gi|254781218|r 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 (205)
Q Consensus 26 ~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~ 69 (205)
++.--+.+.++=.-+--.+.|-.++|+.+|||+.++.+|=.++.
T Consensus 13 R~~Il~aa~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sKe 56 (212)
T 2ras_A 13 RARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFETRE 56 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 99999999999998491407799999983889454411297999
No 445
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=22.82 E-value=33 Score=13.61 Aligned_cols=53 Identities=6% Similarity=-0.135 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999859988999998489999999887799888999999999982
Q gi|254781218|r 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 31 ~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
+-+.++=.-+--.+.|-.++|+.+|||++++.+|=.++...=...+....+.+
T Consensus 14 ~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~sK~~L~~~~~~~~~~~~ 66 (197)
T 2gen_A 14 QAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQY 66 (197)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999759251779999998583921134507987899999999999999
No 446
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=22.74 E-value=33 Score=13.60 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=16.8
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 972983899999977999999997
Q gi|254781218|r 123 KDKGMSQIEFGKLLGMPNSTLSNY 146 (205)
Q Consensus 123 ~~~glsq~elA~~lgis~~tis~~ 146 (205)
....++-.|+++.+|++++++|+.
T Consensus 35 ~~~~~~v~eLa~~l~is~s~vS~H 58 (108)
T 2kko_A 35 AQGERAVEAIATATGMNLTTASAN 58 (108)
T ss_dssp TTCCEEHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 809957999999989098889999
No 447
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=22.61 E-value=33 Score=13.58 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=6.5
Q ss_pred HHHHHHCCCHHHHHHHH
Q ss_conf 99999779999999974
Q gi|254781218|r 131 EFGKLLGMPNSTLSNYE 147 (205)
Q Consensus 131 elA~~lgis~~tis~~E 147 (205)
+||..+|++...|.-|-
T Consensus 29 ~LA~~l~l~~~qV~vWF 45 (56)
T 3a03_A 29 ALAKALRMTDAQVKTWF 45 (56)
T ss_dssp HHHHHHTCCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
T ss_conf 99998669867867964
No 448
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=22.59 E-value=33 Score=13.58 Aligned_cols=20 Identities=0% Similarity=-0.220 Sum_probs=8.1
Q ss_pred CCCCCHHHHHHHHHHHCCCH
Q ss_conf 88999899999999828999
Q gi|254781218|r 150 RTIPEIKPARKIKQVTKKHL 169 (205)
Q Consensus 150 ~~~Ps~~~l~kIa~~lgvs~ 169 (205)
...|+......||+.+|++.
T Consensus 24 ~~yp~~~~r~~LA~~lgl~~ 43 (68)
T 1zq3_P 24 GRYLTAPRLADLSAKLALGT 43 (68)
T ss_dssp CSSCCHHHHHHHHHHHTSCH
T ss_pred CCCCCHHHHHHHHHHHCCCH
T ss_conf 69989999999999979975
No 449
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.44 E-value=33 Score=13.56 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=9.0
Q ss_pred HHHHHHCCCHHHHHHHHCCC
Q ss_conf 99999779999999974148
Q gi|254781218|r 131 EFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 131 elA~~lgis~~tis~~E~g~ 150 (205)
+||..+|++...|..|-..+
T Consensus 39 ~LA~~~gL~~~qV~~WFqNr 58 (75)
T 2da5_A 39 RLRSETKMTRREIDSWFSER 58 (75)
T ss_dssp HHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
T ss_conf 99999297999999979999
No 450
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=22.39 E-value=33 Score=13.56 Aligned_cols=57 Identities=2% Similarity=-0.157 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999999999999999985998899999848999999988779988899999999998
Q gi|254781218|r 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 (205)
Q Consensus 26 ~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~ 82 (205)
++---+.+.++=.-+--.++|-.++|+.+||+++++.+|=.++...=...+-...+.
T Consensus 10 R~~Il~aa~~l~~~~G~~~~s~~~IA~~agvs~~~~Y~~F~sK~~L~~~~~~~~~~~ 66 (194)
T 3dpj_A 10 RDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLAR 66 (194)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999974925188999999868291268887599999999999999999
No 451
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.36 E-value=33 Score=13.55 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=10.4
Q ss_pred HHHHHHHHCCCHHHHHHHHCC
Q ss_conf 899999977999999997414
Q gi|254781218|r 129 QIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 129 q~elA~~lgis~~tis~~E~g 149 (205)
..+||..+|++...|..|-..
T Consensus 33 r~~LA~~l~l~~~qV~~WFqN 53 (68)
T 1yz8_P 33 REEIAVWTNLTEARVRVWFKN 53 (68)
T ss_dssp TTHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999949298997893287
No 452
>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=22.25 E-value=34 Score=13.54 Aligned_cols=41 Identities=5% Similarity=-0.026 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 99999999999859988999998489999999887799888
Q gi|254781218|r 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 31 ~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
+-+.++=.-+--.++|-.++|+.+|||+.++.++=.++...
T Consensus 18 ~aa~~l~~~~G~~~~si~~Ia~~agvs~~tiY~~F~sK~~L 58 (196)
T 3he0_A 18 AAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHL 58 (196)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 99999999739563779999998689977540218999999
No 453
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.16 E-value=34 Score=13.53 Aligned_cols=18 Identities=0% Similarity=0.183 Sum_probs=7.4
Q ss_pred HHHHHHCCCHHHHHHHHC
Q ss_conf 999997799999999741
Q gi|254781218|r 131 EFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 131 elA~~lgis~~tis~~E~ 148 (205)
+||..+|++...|..|-.
T Consensus 39 ~LA~~l~l~~~~V~~WFq 56 (70)
T 2dmu_A 39 QLARKVHLREEKVEVWFK 56 (70)
T ss_dssp HHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
T ss_conf 999995989899478427
No 454
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=22.01 E-value=34 Score=13.51 Aligned_cols=20 Identities=0% Similarity=0.149 Sum_probs=9.8
Q ss_pred CCCCCHHHHHHHHHHHCCCH
Q ss_conf 88999899999999828999
Q gi|254781218|r 150 RTIPEIKPARKIKQVTKKHL 169 (205)
Q Consensus 150 ~~~Ps~~~l~kIa~~lgvs~ 169 (205)
...|+......||..+|++.
T Consensus 44 ~~yP~~~~r~~LA~~l~l~~ 63 (84)
T 2kt0_A 44 QKYLSLQQMQELSNILNLSY 63 (84)
T ss_dssp SSSCCHHHHHHHHHHTTCCH
T ss_pred CCCCCHHHHHHHHHHHCCCH
T ss_conf 79999899999999847987
No 455
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=21.99 E-value=34 Score=13.51 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=11.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 4889998999999998289999
Q gi|254781218|r 149 GRTIPEIKPARKIKQVTKKHLD 170 (205)
Q Consensus 149 g~~~Ps~~~l~kIa~~lgvs~d 170 (205)
-...|+.+....||..+|++..
T Consensus 25 ~~~yP~~~~~~~LA~~lgls~~ 46 (66)
T 3nau_A 25 QSQFPDDAEVYRLIEVTGLARS 46 (66)
T ss_dssp GGGSCCHHHHHHHHHHHCCCHH
T ss_pred HCCCCCHHHHHHHHHHHCCCHH
T ss_conf 8289989999999999889999
No 456
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia}
Probab=21.97 E-value=34 Score=13.50 Aligned_cols=44 Identities=9% Similarity=-0.022 Sum_probs=29.9
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99859988999998489999999887799888999999999982
Q gi|254781218|r 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 40 R~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
+--.+.|-.++|+.+|||+.++.+|=..+...=...+..+...+
T Consensus 27 ~G~~~~t~~~Ia~~Agvs~g~lY~~F~sK~~L~~~~~~~~~~~~ 70 (219)
T 2w53_A 27 HGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPF 70 (219)
T ss_dssp HCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 59240889999998488955420478999999999999999999
No 457
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.94 E-value=34 Score=13.50 Aligned_cols=20 Identities=0% Similarity=-0.019 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHHHHCCCHH
Q ss_conf 89998999999998289999
Q gi|254781218|r 151 TIPEIKPARKIKQVTKKHLD 170 (205)
Q Consensus 151 ~~Ps~~~l~kIa~~lgvs~d 170 (205)
..|+......||..+|++..
T Consensus 30 ~yP~~~~r~~LA~~l~l~~~ 49 (70)
T 2e1o_A 30 KYLSPPERKRLAKMLQLSER 49 (70)
T ss_dssp SSCCHHHHHHHHHHTTCCHH
T ss_pred CCCCHHHHHHHHHHHCCCHH
T ss_conf 99999999999999598988
No 458
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=21.83 E-value=34 Score=13.49 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 689999999999999999859988999998489999999887799888999999999982
Q gi|254781218|r 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 24 ~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
+.++---+-+.++=.-+--.+.|-.++|+.+|||+.++.+|=.++...=...+-.....+
T Consensus 28 ~rR~~Il~aa~~l~~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~ 87 (217)
T 3hta_A 28 ERRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQANEGF 87 (217)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999859040779999999488831487616999999999999999999
No 459
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=21.82 E-value=34 Score=13.48 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 5998899999848999999988
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLF 64 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~ 64 (205)
.=+|-++||..+|||+.+|.+.
T Consensus 18 ~~~SGe~la~~L~iSR~aVwk~ 39 (321)
T 1bia_A 18 EFHSGEQLGETLGMSRAAINKH 39 (321)
T ss_dssp SCBCHHHHHHHHTSCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9597999999879799999999
No 460
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=21.72 E-value=34 Score=13.47 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=31.8
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 9998599889999984899999998877998889999999999828
Q gi|254781218|r 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 (205)
Q Consensus 39 lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~ 84 (205)
+.+.-+.|-.++|+.+|||+.++.+|=.++...=...+-.....+.
T Consensus 27 ~~~~G~~T~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 72 (190)
T 2v57_A 27 LADHPTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSN 72 (190)
T ss_dssp HTTCTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9986997399999998909999977738999999999999999999
No 461
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.68 E-value=34 Score=13.47 Aligned_cols=21 Identities=5% Similarity=0.080 Sum_probs=10.5
Q ss_pred CCCCCHHHHHHHHHHHCCCHH
Q ss_conf 889998999999998289999
Q gi|254781218|r 150 RTIPEIKPARKIKQVTKKHLD 170 (205)
Q Consensus 150 ~~~Ps~~~l~kIa~~lgvs~d 170 (205)
...|+......||..+|++..
T Consensus 29 ~~~P~~~~~~~La~~~~l~~~ 49 (70)
T 2da2_A 29 NAYPKDDEFEQLSNLLNLPTR 49 (70)
T ss_dssp CSSCCHHHHHHHHHHSCCCHH
T ss_pred CCCCCHHHHHHHHHHHCCCHH
T ss_conf 699899999999999495988
No 462
>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3}
Probab=21.62 E-value=34 Score=13.46 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 6689999999999999999859988999998489999999887799888999999999982
Q gi|254781218|r 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 (205)
Q Consensus 23 ~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~ 83 (205)
|+.++---+-+.++=.-+--.++|-.++|+.+|||++++.+|=.++...=...+-.....+
T Consensus 8 ~~~R~~Il~aA~~l~~e~G~~~~si~~Ia~~agvs~~t~Y~~F~sKe~Ll~~v~~~~~~~~ 68 (193)
T 2dg8_A 8 PQRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGRFTDHI 68 (193)
T ss_dssp TTHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 7999999999999999759040769999999890999998780899999999999999999
No 463
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=21.50 E-value=6.5 Score=17.93 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=13.3
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHH
Q ss_conf 99999972983899999977999999
Q gi|254781218|r 118 LKSIRKDKGMSQIEFGKLLGMPNSTL 143 (205)
Q Consensus 118 Lk~lR~~~glsq~elA~~lgis~~ti 143 (205)
|+.+.+.--+|..++|+.+|+|.+++
T Consensus 19 l~~L~~d~R~s~~~IA~~lg~S~~tV 44 (163)
T 2gqq_A 19 LNELQKDGRISNVELSKRVGLSPTPC 44 (163)
T ss_dssp HHHHHHCSSCCTTGGGTSSSCCTTTS
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHH
T ss_conf 99999858999999999989099999
No 464
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.43 E-value=35 Score=13.43 Aligned_cols=18 Identities=17% Similarity=0.475 Sum_probs=7.8
Q ss_pred HHHHHHCCCHHHHHHHHC
Q ss_conf 999997799999999741
Q gi|254781218|r 131 EFGKLLGMPNSTLSNYEQ 148 (205)
Q Consensus 131 elA~~lgis~~tis~~E~ 148 (205)
+||..+|++...|..|-.
T Consensus 39 ~La~~~~l~~~qV~~WF~ 56 (70)
T 2da1_A 39 EMADKSGLPQKVIKHWFR 56 (70)
T ss_dssp HHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
T ss_conf 999997919999889779
No 465
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.39 E-value=35 Score=13.43 Aligned_cols=21 Identities=5% Similarity=0.041 Sum_probs=11.1
Q ss_pred HHHHHHHCCCHHHHHHHHCCC
Q ss_conf 999999779999999974148
Q gi|254781218|r 130 IEFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 130 ~elA~~lgis~~tis~~E~g~ 150 (205)
.+||..+|++...|..|-..+
T Consensus 44 ~~La~~~gL~~~~V~~WFqNr 64 (89)
T 2dmp_A 44 DRLRVETKLSRREIDSWFSER 64 (89)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999598999999989999
No 466
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.20 E-value=35 Score=13.41 Aligned_cols=20 Identities=0% Similarity=-0.109 Sum_probs=9.0
Q ss_pred CCCCCHHHHHHHHHHHCCCH
Q ss_conf 88999899999999828999
Q gi|254781218|r 150 RTIPEIKPARKIKQVTKKHL 169 (205)
Q Consensus 150 ~~~Ps~~~l~kIa~~lgvs~ 169 (205)
...|+......||..+|++.
T Consensus 29 ~~yP~~~~r~~LA~~l~l~~ 48 (70)
T 2djn_A 29 TQYLALPERAELAASLGLTQ 48 (70)
T ss_dssp CSSCCHHHHHHHHHHSSCCH
T ss_pred CCCCCHHHHHHHHHHHCCCH
T ss_conf 69989999999999978786
No 467
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=21.18 E-value=35 Score=13.40 Aligned_cols=53 Identities=8% Similarity=-0.023 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999999999985998899999848999999988779988899999999
Q gi|254781218|r 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 (205)
Q Consensus 27 ~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~l 79 (205)
+.--+-+.++=.-.--.+.|-.++|+.+|+|++++.+|=.++...=...+...
T Consensus 8 ~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 60 (202)
T 2id6_A 8 DAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSV 60 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999872904164999999879099999840899999999999985
No 468
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=21.04 E-value=35 Score=13.38 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=10.2
Q ss_pred HHHHHHHCCCHHHHHHHHCCC
Q ss_conf 999999779999999974148
Q gi|254781218|r 130 IEFGKLLGMPNSTLSNYEQGR 150 (205)
Q Consensus 130 ~elA~~lgis~~tis~~E~g~ 150 (205)
.+||..+|++...|.-|-..+
T Consensus 33 ~~LA~~l~l~~~~V~vWFqNr 53 (68)
T 1ahd_P 33 IEIAHALSLTERQIKIWFQNR 53 (68)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999699988978964888
No 469
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.71 E-value=36 Score=13.34 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=8.3
Q ss_pred HHHHHHCCCHHHHHHHHCC
Q ss_conf 9999977999999997414
Q gi|254781218|r 131 EFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 131 elA~~lgis~~tis~~E~g 149 (205)
+||+.+|++...|..|-..
T Consensus 39 ~La~~l~l~~~qV~~WFqN 57 (80)
T 2dmq_A 39 QLAQKTGLTKRVLQVWFQN 57 (80)
T ss_dssp HHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
T ss_conf 9999969599996897698
No 470
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=20.40 E-value=37 Score=13.30 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 599889999984899999998877998889999999
Q gi|254781218|r 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 (205)
Q Consensus 43 ~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~ 78 (205)
.++|-.++|+.+||++.++.++=.++...=..++-.
T Consensus 60 ~~~sv~~IA~~AGvs~~t~Y~hF~sK~~Ll~av~~~ 95 (273)
T 3c07_A 60 DRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDR 95 (273)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 417899999998919999999958767899999999
No 471
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=20.39 E-value=37 Score=13.30 Aligned_cols=20 Identities=0% Similarity=-0.017 Sum_probs=9.3
Q ss_pred CCCCCHHHHHHHHHHHCCCH
Q ss_conf 88999899999999828999
Q gi|254781218|r 150 RTIPEIKPARKIKQVTKKHL 169 (205)
Q Consensus 150 ~~~Ps~~~l~kIa~~lgvs~ 169 (205)
...|+......||..+|++.
T Consensus 31 ~~yP~~~~r~~LA~~lgl~~ 50 (77)
T 1nk2_P 31 QRYLSAPEREHLASLIRLTP 50 (77)
T ss_dssp CSCCCHHHHHHHHHHTTCCH
T ss_pred CCCCCHHHHHHHHHHHCCCH
T ss_conf 79989999999999949886
No 472
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=20.36 E-value=37 Score=13.30 Aligned_cols=20 Identities=0% Similarity=-0.183 Sum_probs=8.7
Q ss_pred CCCCCHHHHHHHHHHHCCCH
Q ss_conf 88999899999999828999
Q gi|254781218|r 150 RTIPEIKPARKIKQVTKKHL 169 (205)
Q Consensus 150 ~~~Ps~~~l~kIa~~lgvs~ 169 (205)
...|+......||..+|++.
T Consensus 25 ~~yP~~~~r~~La~~l~l~~ 44 (63)
T 2h1k_A 25 NKYISRPRRVELAVMLNLTE 44 (63)
T ss_dssp CSSCCHHHHHHHHHHHTCCH
T ss_pred CCCCCHHHHHHHHHHHCCCH
T ss_conf 79989999999999939797
No 473
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=20.36 E-value=37 Score=13.30 Aligned_cols=48 Identities=6% Similarity=-0.062 Sum_probs=31.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHC------CC-CHHHHHHHHCCCHHHHHH
Q ss_conf 3100015668999999999999999985------99-889999984899999998
Q gi|254781218|r 16 EYTLIITPEIRQYWKDVGTRIKDIRKAN------NK-TQKEMAIGANQLESAVNL 63 (205)
Q Consensus 16 ~~~~~~~~~~~~~~~~iG~rik~lR~~~------gl-tQ~elA~~~gis~~~is~ 63 (205)
++-..|+.+-+-.|.+|-++|+..=... .| |..+||+..|||+.+|.+
T Consensus 18 ~~~~~~~~~~~P~Y~qI~~~L~~~I~~G~l~pG~rLPsereLA~~~gVSR~TVR~ 72 (272)
T 3eet_A 18 YFQGHMTFGEQPAYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALE 72 (272)
T ss_dssp CC-------CCCHHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 1146689999997999999999999759999929990899999998949999999
No 474
>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=20.30 E-value=37 Score=13.29 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
Q ss_conf 9999999999998599889999984899999998877998889999
Q gi|254781218|r 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 (205)
Q Consensus 30 ~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~ 75 (205)
-+-+.++=.-+--.+.|-.++|+.+|||+.++.+|=.++...=...
T Consensus 20 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~~K~~L~~~~ 65 (199)
T 3crj_A 20 MQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAF 65 (199)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
T ss_conf 9999999997490407799999997919999988858999999999
No 475
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=20.08 E-value=37 Score=13.26 Aligned_cols=114 Identities=14% Similarity=0.005 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCC
Q ss_conf 56689999999999999999859988999998489999999887799888999999999982899999614532210000
Q gi|254781218|r 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 (205)
Q Consensus 22 ~~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~ 101 (205)
+....+|.+.|-.- .......+..++|+.+|++++++++ ++-+|.+.- ++..+. ...
T Consensus 12 s~~ee~YL~aI~~l---~~~~~~v~~~~iA~~L~vs~~svt~-----------~l~~L~~~G------lv~~~~---~gi 68 (139)
T 2x4h_A 12 SRREFSYLLTIKRY---NDSGEGAKINRIAKDLKIAPSSVFE-----------EVSHLEEKG------LVKKKE---DGV 68 (139)
T ss_dssp CHHHHHHHHHHHHH---HTTTSCBCHHHHHHHHTCCHHHHHH-----------HHHHHHHTT------SEEEET---TEE
T ss_pred CHHHHHHHHHHHHH---HHCCCCCCHHHHHHHHCCCCHHHHH-----------HHHHHHHCC------CEEEEC---CCC
T ss_conf 88999999999999---9759986699999996889079999-----------999999889------954504---771
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHH-HHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 23213455467779999999-99729838999999779999999-97414889998999999998289
Q gi|254781218|r 102 DVTNKKRLDPYAIGARLKSI-RKDKGMSQIEFGKLLGMPNSTLS-NYEQGRTIPEIKPARKIKQVTKK 167 (205)
Q Consensus 102 ~~~~~~~~d~~~iG~rLk~l-R~~~glsq~elA~~lgis~~tis-~~E~g~~~Ps~~~l~kIa~~lgv 167 (205)
.++. -|.++... .....+-..=|. .+|++..... .-+.=....+.+.+.+|++.||-
T Consensus 69 ~LT~--------~G~~~A~~i~rrHrl~e~fL~-~lgi~~~~a~~~A~~iEH~ls~e~~~~L~~~Lg~ 127 (139)
T 2x4h_A 69 WITN--------NGTRSINYLIKAHRVIEILLV-NIGIDKQTACEYSKQFDYLIPEEIIDKLYNYLGK 127 (139)
T ss_dssp EECH--------HHHHHHHHHHHHHHHHHHHHH-HHTCCHHHHHHHHHHHGGGSCHHHHHHHHHHTTC
T ss_pred EECH--------HHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 5788--------899999999999999999999-9499989999999887752899999999998189
No 476
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=20.02 E-value=37 Score=13.25 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=9.0
Q ss_pred CCCCHHHHHHHHHHHCCCHH
Q ss_conf 89998999999998289999
Q gi|254781218|r 151 TIPEIKPARKIKQVTKKHLD 170 (205)
Q Consensus 151 ~~Ps~~~l~kIa~~lgvs~d 170 (205)
..|+.+....||..+|++..
T Consensus 26 ~~P~~~~~~~LA~~~~L~~~ 45 (66)
T 1bw5_A 26 PRPDALMKEQLVEMTGLSPR 45 (66)
T ss_dssp SCCCHHHHHHHHHHHTSCHH
T ss_pred CCCCHHHHHHHHHHHCCCHH
T ss_conf 99999999999999390999
Done!