BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter asiaticus str. psy62] (205 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter asiaticus str. psy62] gi|254040895|gb|ACT57691.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter asiaticus str. psy62] gi|317120682|gb|ADV02505.1| hypothetical protein SC1_gp125 [Liberibacter phage SC1] gi|317120826|gb|ADV02647.1| hypothetical protein SC1_gp125 [Candidatus Liberibacter asiaticus] Length = 205 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 205/205 (100%), Positives = 205/205 (100%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA Sbjct: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS Sbjct: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV Sbjct: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 Query: 181 PKSIKRAKGNQSSKKSKKDKKSSNP 205 PKSIKRAKGNQSSKKSKKDKKSSNP Sbjct: 181 PKSIKRAKGNQSSKKSKKDKKSSNP 205 >gi|317120724|gb|ADV02546.1| hypothetical protein SC2_gp125 [Liberibacter phage SC2] gi|317120785|gb|ADV02606.1| hypothetical protein SC2_gp125 [Candidatus Liberibacter asiaticus] Length = 199 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 136/199 (68%), Positives = 157/199 (78%), Gaps = 1/199 (0%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRI+DIRK+ +KT E+A ANQ ES Sbjct: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIRDIRKSKDKTLDEIAKEANQTEST 60 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI-DRRYEDVTNKKRLDPYAIGARLK 119 + FENG+CSTSI YAL LRNEYEISFDWIYDGE I LDP AIG RLK Sbjct: 61 IWKFENGLCSTSINYALCLRNEYEISFDWIYDGETILKVYKPKTLKGDVLDPVAIGLRLK 120 Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 IR+ G++++EFGKL+G+P + +S YE G+ P I A+ IKQ TKKHLDWIYFGDEVI Sbjct: 121 EIREHLGLNRVEFGKLVGLPCALISMYESGKRTPRITTAQNIKQATKKHLDWIYFGDEVI 180 Query: 180 VPKSIKRAKGNQSSKKSKK 198 +PKSIKRAK NQSS+K+K+ Sbjct: 181 IPKSIKRAKANQSSRKAKE 199 >gi|315122578|ref|YP_004063067.1| hypothetical protein CKC_04150 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495980|gb|ADR52579.1| hypothetical protein CKC_04150 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 174 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 97/174 (55%), Positives = 127/174 (72%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ITPE R YWK VG RI+DIRK + KEMAI + + SA++ FE G+CSTSI YAL+ Sbjct: 1 MVITPETRHYWKTVGIRIRDIRKNKGISTKEMAIVSETMRSAISQFERGICSTSINYALF 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 LRNE+++ FDWIYDGE +DR Y DV K+ + IG R+KSIRKDKGM+ EFG L+G+ Sbjct: 61 LRNEFKVGFDWIYDGEHVDRLYRDVVKKREFNSVEIGNRIKSIRKDKGMTLKEFGNLIGL 120 Query: 139 PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQS 192 + L N E G P I+ A KIK T+K LDWIYFGDE+IVPKSI+R++ +++ Sbjct: 121 SYAGLDNIENGHRKPRIETAIKIKYATQKSLDWIYFGDEIIVPKSIERSQSSKN 174 >gi|153955926|ref|YP_001396691.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856268|ref|YP_002473390.1| hypothetical protein CKR_2925 [Clostridium kluyveri NBRC 12016] gi|146348784|gb|EDK35320.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569992|dbj|BAH07976.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 200 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 16/142 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +R N TQ+E+A S + ++E S I + + ++ S D++ Sbjct: 2 FGEKLKKLRMDKNMTQQELAKILKISSSTIGMYEQNRRSPDIETLKLIADYFQCSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 I+ RL +RK MSQ E + LG+ T+S YE G Sbjct: 62 GKNDIE----------------NMNRLSLLRKSHNMSQAELAEKLGVTQQTISKYENGSR 105 Query: 152 IPEIKPARKIKQVTKKHLDWIY 173 P+ + + + + +D++ Sbjct: 106 EPDTETLKLLSSIFNVSIDYLL 127 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +RK++N +Q E+A + ++ +ENG L + + +S D++ Sbjct: 70 NRLSLLRKSHNMSQAELAEKLGVTQQTISKYENGSREPDTETLKLLSSIFNVSIDYLLGA 129 Query: 94 EVIDRRYEDVTNKKR 108 I K Sbjct: 130 TNIRNHDTTYITPKE 144 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G +LK +R DK M+Q E K+L + +ST+ YEQ R P+I+ + I + D++ Sbjct: 1 MFGEKLKKLRMDKNMTQQELAKILKISSSTIGMYEQNRRSPDIETLKLIADYFQCSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +++ + + + + +++ +K Sbjct: 61 LGKNDIENMNRLSLLRKSHNMSQAELAEK 89 >gi|322378177|ref|ZP_08052662.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321280907|gb|EFX57922.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 151 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + ++K++RK Q+E+A N A +ENG + L +++S D Sbjct: 1 MEKFHEKLKNLRKKRGLIQQEVAELLNVERVAYTKWENGKSKPNYEKLSMLACIFDVSID 60 Query: 89 WIYDGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 ++ +R + K+ RLK +R G SQ E + +G+ ++ S+ Sbjct: 61 YLLGDYLEISKERYLKLKKQKEEEKKNLFSVRLKELRLQHGFSQEELAEQIGIKQNSYSD 120 Query: 146 YEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +E G++ P + KI LDW++ Sbjct: 121 WEHGKSKPNYEKLEKIADFFGVSLDWLF 148 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 32/60 (53%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R + +Q+E+A +++ + +E+G + + + + +S DW++ + Sbjct: 92 RLKELRLQHGFSQEELAEQIGIKQNSYSDWEHGKSKPNYEKLEKIADFFGVSLDWLFGRK 151 >gi|315122488|ref|YP_004062977.1| hypothetical protein CKC_03700 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495890|gb|ADR52489.1| hypothetical protein CKC_03700 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 185 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 83/174 (47%), Positives = 117/174 (67%), Gaps = 1/174 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 WK++G R +D+R+ N + ++ + AV +E+G+ S YAL+LRNE+ SFD Sbjct: 11 WKEIGQRFRDLRERNGYERSDIIKKTDDQGGAVYKYESGVQPASTNYALFLRNEFGASFD 70 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 W+YDG R+Y+DV KK +DP+AIGARLK+IRKD+GM+Q EFG L+G+ ++ +S E Sbjct: 71 WLYDGVETRRKYKDVQTKKIIDPHAIGARLKAIRKDEGMTQGEFGALVGLTHTGISKIET 130 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIK-RAKGNQSSKKSKKDKK 201 G PEIK A KIK+ K LDWIYFGDE I+PK + RAK + +SKK+ + Sbjct: 131 GHRTPEIKTALKIKRSLGKTLDWIYFGDEEIIPKKNRLRAKQSNFLHESKKNSR 184 >gi|255306539|ref|ZP_05350710.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 187 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 2/142 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +RK QKE+A N SA +E G + + L + + D++ Sbjct: 4 LSDRLKFLRKEKGVMQKEIANYLNITTSAYGFYEQGKRTPTPEMLSSLAEYFGTTVDYLI 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 D + ++++K + RLK +R +K M+Q + L + S YEQG+T Sbjct: 64 GR--YDNKASNISSKTSCNNTLFQKRLKELRAEKNMTQEDVANKLNLTKSAYGYYEQGKT 121 Query: 152 IPEIKPARKIKQVTKKHLDWIY 173 +P+ + ++ D++ Sbjct: 122 VPDAYMLSSLAEIFNVTTDYLL 143 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 34/87 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R N TQ+++A N +SA +E G L + ++ D++ Sbjct: 86 KRLKELRAEKNMTQEDVANKLNLTKSAYGYYEQGKTVPDAYMLSSLAEIFNVTTDYLLGR 145 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ + V + + + Sbjct: 146 SIVKNDIDTVAAHRVNPHKDLPEEAQE 172 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-D 176 LK +RK+KG+ Q E L + S YEQG+ P + + + +D++ D Sbjct: 8 LKFLRKEKGVMQKEIANYLNITTSAYGFYEQGKRTPTPEMLSSLAEYFGTTVDYLIGRYD 67 Query: 177 EVIVPKSIKRAKGNQSSKKSKKDKK 201 S K + N +K K+ + Sbjct: 68 NKASNISSKTSCNNTLFQKRLKELR 92 >gi|332982996|ref|YP_004464437.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700674|gb|AEE97615.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 222 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 6/142 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R+K +R+ T ++++ A S ++ ENG + S++ L + ++ Sbjct: 3 VGERLKQLRQQRKLTLRDLSQKAGISISFLSDIENGRSNPSLKRLSELAEVLGTTVSYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + + ++ T I RLK +RK + S E + LG+ + E+G Sbjct: 63 GEDEPNIVSDNNTA------MEIANRLKELRKQRKWSVAETAEKLGLSEQYYHDLEEGNR 116 Query: 152 IPEIKPARKIKQVTKKHLDWIY 173 P+IK +K+ + D++ Sbjct: 117 QPDIKLTKKLADIFNVSADYLI 138 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 2/98 (2%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 S ++ I++ ++ R+K++RK + E A E + E Sbjct: 56 TTVSYLLGEDEPNIVSDN--NTAMEIANRLKELRKQRKWSVAETAEKLGLSEQYYHDLEE 113 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 G I+ L + + +S D++ + Y Sbjct: 114 GNRQPDIKLTKKLADIFNVSADYLIGRINVPNSYIPEE 151 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G RLK +R+ + ++ + + G+ S LS+ E GR+ P +K ++ +V + + Sbjct: 1 MSVGERLKQLRQQRKLTLRDLSQKAGISISFLSDIENGRSNPSLKRLSELAEVLGTTVSY 60 Query: 172 IYFGDEV-IVPKSIKRAKGNQSSKKSKKDKK 201 + DE IV + + K+ +K +K Sbjct: 61 LLGEDEPNIVSDNNTAMEIANRLKELRKQRK 91 >gi|260893514|ref|YP_003239611.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260865655|gb|ACX52761.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 256 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 17/158 (10%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 ++ PE ++ +VG RI+ +R + +E+A A S ++ E G S+ L Sbjct: 62 LVEPETKEGKINVGERIRLLRTEKGWSLQELACRAGISASYLSEIERGTVYPSLSTLKRL 121 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 E ++ + +GARL+++R++ G++Q + + G+ Sbjct: 122 AEELGVAPVTFLGQQGT-----------------LGARLRALREEYGLTQAQLAAMAGVT 164 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + EQG+ P +K KI Q + + Sbjct: 165 AGLIGQIEQGKVQPSLKTLEKIAQAMGVSPCYFLIEPD 202 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 12/135 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ +R+ + ++A A S ++ E G S+R L +S + + Sbjct: 5 GERIRALREEKGMSLHDLARKAQISLSYLSEIERGTKRPSLRTIEKLAQALNVSKARLVE 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 E + + +G R++ +R +KG S E G+ S LS E+G Sbjct: 65 PETKEGKIN------------VGERIRLLRTEKGWSLQELACRAGISASYLSEIERGTVY 112 Query: 153 PEIKPARKIKQVTKK 167 P + +++ + Sbjct: 113 PSLSTLKRLAEELGV 127 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 12/139 (8%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 + P L T + +E + + Q +G R++ +R+ TQ ++A A + Sbjct: 110 TVYPSLSTLKRLAEELGVAPVTFLGQ-QGTLGARLRALREEYGLTQAQLAAMAGVTAGLI 168 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA----- 116 E G S++ + +S + + + N + A Sbjct: 169 GQIEQGKVQPSLKTLEKIAQAMGVSPCYFLIEPDASEQVLSMLNPDLRELLADTNVQAVL 228 Query: 117 -RL-----KSIRKDKGMSQ 129 L K IR Q Sbjct: 229 TMLANMSKKEIRFILNFIQ 247 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 G R++++R++KGMS + + + S LS E+G P ++ K+ Q Sbjct: 1 MIVNGERIRALREEKGMSLHDLARKAQISLSYLSEIERGTKRPSLRTIEKLAQALNVS 58 >gi|323486025|ref|ZP_08091356.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323400592|gb|EGA92959.1| transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 216 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 3/171 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G IK +RK TQ E+ ++ ++ +EN + + L + +S +YD Sbjct: 5 GNIIKQLRKEAGLTQGELGKKLGVVKQTISSWENNVSEPNSETLSELSKLFGVSVAQLYD 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 V + Y + R++ + +++ MS+ EF + +G Y G + Sbjct: 65 HGVPNIDYANFKMDTPEFVLDFKMRIRDLMEEQKMSEDEFAQRVGFHKEEKDAYLYGNKM 124 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 P I+ KI D++ + K I + + K ++ D+ S Sbjct: 125 PSIEDLIKIAGALNVSTDYLL---NISSRKRISSQEESLLQKFNRCDEDSQ 172 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +K +RK+ G++Q E GK LG+ T+S++E + P + ++ ++ + Sbjct: 1 MAVNGNIIKQLRKEAGLTQGELGKKLGVVKQTISSWENNVSEPNSETLSELSKLFGVSVA 60 Query: 171 WIY 173 +Y Sbjct: 61 QLY 63 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 20/141 (14%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ D RI+D+ + ++ E A + + + G SI + + +S Sbjct: 81 EFVLDFKMRIRDLMEEQKMSEDEFAQRVGFHKEEKDAYLYGNKMPSIEDLIKIAGALNVS 140 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL-----GMPNS 141 D++ + R + + K R D+ Q K G+ Sbjct: 141 TDYLLNISSRKRISSQEESLLQ----------KFNRCDEDSQQYLLAKAGVLCVEGISAV 190 Query: 142 TLSNY-----EQGRTIPEIKP 157 Y E+ ++ P Sbjct: 191 AAGEYGKYADEEKKSFPSSGT 211 >gi|253578952|ref|ZP_04856223.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849895|gb|EES77854.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 170 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 1/149 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +RIKD+R NN TQ+E+A ++ +E G + + L + +S D++ Sbjct: 3 IESRIKDLRIENNYTQRELAAKIGLTPKMISFYEKGERVPPLDIIVKLVQIFNVSSDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 ED+ + G L R+ +S +F K +G+ LS E G Sbjct: 63 GLSDKRYPDEDLGWRSPHIENRFGKILSDYRRTNDISISDFSKKIGVSKDLLSQIEFGIY 122 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 P ++ RKI ++T +D++ G E++ Sbjct: 123 TPSLELLRKISELTGYSIDYL-TGAEILT 150 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +R+K +R + +Q E +G+ +S YE+G +P + K+ Q+ D+ Sbjct: 1 MGIESRIKDLRIENNYTQRELAAKIGLTPKMISFYEKGERVPPLDIIVKLVQIFNVSSDY 60 Query: 172 IYFGDEVIVPKS 183 + + P Sbjct: 61 LLGLSDKRYPDE 72 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + D R+ N+ + + + + ++ E G+ + S+ + S D++ Sbjct: 85 FGKILSDYRRTNDISISDFSKKIGVSKDLLSQIEFGIYTPSLELLRKISELTGYSIDYLT 144 Query: 92 DGEVIDRRYEDVTNKKRL 109 E++ R +++ + ++ Sbjct: 145 GAEILTRVNKNIESSGQI 162 >gi|315122908|ref|YP_004063397.1| hypothetical protein CKC_05820 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496310|gb|ADR52909.1| hypothetical protein CKC_05820 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 210 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 73/178 (41%), Positives = 108/178 (60%), Gaps = 4/178 (2%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E W+ +G R +D+R+ + ++ + AV +E G+ S YAL+LRNE+ Sbjct: 6 ENTLDWQQIGQRFRDLRERYGYKRSDIIKKTDDQGGAVYKYEAGVQPASTNYALFLRNEF 65 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 SFDW+YDG + D K+ ++P IG R+K RK++GM+ EFG+ +G+P ST+ Sbjct: 66 GASFDWLYDGVEAKIKSSDRIKKRLINPIEIGERIKKFRKEEGMTLKEFGEWVGLPVSTV 125 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPK----SIKRAKGNQSSKKSK 197 S YE+G + PEIK A KIK+ K LDWIYFGDE IVPK K++ +Q+ +KS+ Sbjct: 126 STYERGISAPEIKTALKIKRALGKPLDWIYFGDEEIVPKKSRLRAKQSNFHQNQRKSQ 183 >gi|315122910|ref|YP_004063399.1| hypothetical protein CKC_05830 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496312|gb|ADR52911.1| hypothetical protein CKC_05830 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 251 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 101/179 (56%), Gaps = 5/179 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 WK++G R + +RK + Q E+ + V FE G+ S YAL+LRN + SFD Sbjct: 11 WKEIGQRFRALRKQHGFDQTELVSMSG-RRGNVARFEAGLAPASTNYALFLRNTFGASFD 69 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 W+YDG R D T KK +P+AIGARLK+IR G++Q EFG L+G+ + + N E Sbjct: 70 WLYDGVENLRSERDRTEKKIFNPHAIGARLKAIRLKMGLTQKEFGLLIGLSSVGVGNIEN 129 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR----AKGNQSSKKSKKDKKSS 203 G PEIK A KIK+ K LDWIYFGDE I ++ R K K+ KK+ K Sbjct: 130 GHRTPEIKTALKIKRALNKTLDWIYFGDECIGTRNRVRPSVTTKPTIPLKQLKKELKEE 188 >gi|315121942|ref|YP_004062431.1| hypothetical protein CKC_00960 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495344|gb|ADR51943.1| hypothetical protein CKC_00960 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 193 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 81/186 (43%), Positives = 109/186 (58%), Gaps = 6/186 (3%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E W+++G R K++R+ +N + + + AV +E G S YAL+LRN + Sbjct: 6 ENTLDWREIGQRFKEVRERHNYKRSMIMEKTDDQGGAVYKYEAGAQPASTNYALFLRNTF 65 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 SFDW+YDG R D T KK +P AIGARLK+IR G++Q EFG L+G+ + + Sbjct: 66 GASFDWLYDGVENLRSERDRTEKKIFNPRAIGARLKAIRLKMGLTQKEFGLLIGLSSVGV 125 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPK----SIKRAKGNQ--SSKKSK 197 N E G PEIK A KIK+ K LDWIYFGDE I+PK K++K NQ S++ S Sbjct: 126 GNIENGHRTPEIKTALKIKRALGKPLDWIYFGDEPIIPKKNRLQAKQSKSNQIKSNQSSP 185 Query: 198 KDKKSS 203 K KK S Sbjct: 186 KAKKKS 191 Score = 36.1 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 12/100 (12%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + LD IG R K +R+ + + + YE G A ++ Sbjct: 6 ENTLDWREIGQRFKEVRERHNYKRSMIMEKTDDQGGAVYKYEAGAQPASTNYALFLRNTF 65 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 DW+Y G E N S++ + +KK NP Sbjct: 66 GASFDWLYDGVE------------NLRSERDRTEKKIFNP 93 >gi|83590463|ref|YP_430472.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573377|gb|ABC19929.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 300 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 71/177 (40%), Gaps = 23/177 (12%) Query: 10 SLKSLQEYTLIITPEIRQYWKD--------VGTRIKDIRKANNKTQKEMAIGANQLESAV 61 SL +L+E I+ ++ + ++ VG R++ +R+ T E++ + + + Sbjct: 43 SLATLKEVAAILGVDVSYFQEENDNKNDNSVGARLRRLREQKGITLSELSRRSGVSLAHI 102 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E + S++ L E+S + D ++GA+LK + Sbjct: 103 SEIERSRSTASLKTLEKLAAVLEVSTSSLLRSGQQD---------------SLGAKLKRL 147 Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 R+ G++Q E + +G+ +S + E R P + + + + D+ Sbjct: 148 REKIGLTQKELAQQVGISHSLIGQIETDRIQPSLSTLSSLAEALGVSTCYFLMEDDE 204 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 13/159 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R+ +E+A + + + E G S+ + + + Sbjct: 3 IGEKLKKLREDRGIPLEELADRLDIAPACMVEVEQGTRRLSLATLKEVAAILGVDVSYF- 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + ++GARL+ +R+ KG++ E + G+ + +S E+ R+ Sbjct: 62 -----------QEENDNKNDNSVGARLRRLREQKGITLSELSRRSGVSLAHISEIERSRS 110 Query: 152 IPEIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKG 189 +K K+ V + + G + + +KR + Sbjct: 111 TASLKTLEKLAAVLEVSTSSLLRSGQQDSLGAKLKRLRE 149 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 15/138 (10%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKD-----VGTRIKDIRKANNKTQKEMAIGANQLESAV 61 SLK+L++ ++ + +G ++K +R+ TQKE+A S + Sbjct: 110 STASLKTLEKLAAVLEVSTSSLLRSGQQDSLGAKLKRLREKIGLTQKELAQQVGISHSLI 169 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E S+ L +S + + + Y D Y + A ++ Sbjct: 170 GQIETDRIQPSLSTLSSLAEALGVSTCYFLMEDDEEDLYLD---------YRLEADIREA 220 Query: 122 RKDKGMSQIEFGKLLGMP 139 + + Q L G Sbjct: 221 -LRRPLLQQVVRDLAGWS 237 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK +R+D+G+ E L + + + EQG + +++ + + + Sbjct: 1 MTIGEKLKKLREDRGIPLEELADRLDIAPACMVEVEQGTRRLSLATLKEVAAILGVDVSY 60 Query: 172 IYFGDEVIVPKSI----KRAKGNQSSKKSKKDKKS 202 ++ S+ +R + + S+ ++S Sbjct: 61 FQEENDNKNDNSVGARLRRLREQKGITLSELSRRS 95 >gi|78044374|ref|YP_359408.1| AraC family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996489|gb|ABB15388.1| transcriptional regulator, AraC family [Carboxydothermus hydrogenoformans Z-2901] Length = 257 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 17/159 (10%) Query: 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 I+ E + +G RI+ IR+ T E+A S ++ E + S+ Sbjct: 59 KAQILETEQLEVSLTLGERIRLIREEKKLTISELAARVGISVSYLSEIERDTVNPSVATL 118 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + E +S + E +++G +LK +R+D G++Q E Sbjct: 119 RRIAEELGVSVADLMGKE-----------------HSLGYKLKKLREDMGLTQAELASQA 161 Query: 137 GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 G+ + EQG+ P +K K+ +V + Sbjct: 162 GVSPGLIGQIEQGKVQPSLKTIEKLAEVLGTTPCYFILE 200 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 13/159 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +I+++R+ T E++ A S ++ E G S++ + ++ I + Sbjct: 5 GNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNVNKAQILE 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 E ++ +G R++ IR++K ++ E +G+ S LS E+ Sbjct: 65 TEQLEVS------------LTLGERIRLIREEKKLTISELAARVGISVSYLSEIERDTVN 112 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 P + R+I + + + G E + +K+ + + Sbjct: 113 PSVATLRRIAEELGVSVADLM-GKEHSLGYKLKKLREDM 150 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 1/98 (1%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 +NP + T + +E + + + + +G ++K +R+ TQ E+A A + Sbjct: 110 TVNPSVATLRRIAEELGVSVADLMGKEH-SLGYKLKKLREDMGLTQAELASQAGVSPGLI 168 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 E G S++ L + + + + Sbjct: 169 GQIEQGKVQPSLKTIEKLAEVLGTTPCYFILEQTSPEQ 206 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +++ +R+++G++ E K G+ S LS E+G P +K KI + + Sbjct: 1 MTVKGNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNVNKA 60 Query: 171 WIYFGDEVIVPKSI-KRAKGNQSSKKSKKDK 200 I +++ V ++ +R + + KK + Sbjct: 61 QILETEQLEVSLTLGERIRLIREEKKLTISE 91 >gi|323486027|ref|ZP_08091358.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum WAL-14163] gi|323400594|gb|EGA92961.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum WAL-14163] Length = 143 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 13/146 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R+ N KTQ E+A+ + ++ +E G I + L Y +S D + Sbjct: 3 LAENLKFLREQNGKTQGELAVLFGIEQKTISSWECGSRKPPIGTIVSLAKLYRVSLDDLV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGR 150 ++ N L +RK GM+Q E +++G+ S++S E G+ Sbjct: 63 LTDMRPPIPVYALN------------LAYLRKKYGMTQQELVEIIGLKNKSSISLIENGK 110 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGD 176 P I+ K+ +D I D Sbjct: 111 YEPSIENLEKLADFFGVTMDQIVKQD 136 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALY 78 ++ ++R + +RK TQ+E+ +S+++L ENG SI Sbjct: 61 LVLTDMRPPIPVYALNLAYLRKKYGMTQQELVEIIGLKNKSSISLIENGKYEPSIENLEK 120 Query: 79 LRNEYEISFDWIYDGE 94 L + + ++ D I + Sbjct: 121 LADFFGVTMDQIVKQD 136 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK +R+ G +Q E L G+ T+S++E G P I + ++ + LD Sbjct: 1 MYLAENLKFLREQNGKTQGELAVLFGIEQKTISSWECGSRKPPIGTIVSLAKLYRVSLDD 60 Query: 172 IYFGD 176 + D Sbjct: 61 LVLTD 65 >gi|225180882|ref|ZP_03734330.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225168363|gb|EEG77166.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 255 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 14/149 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ T +E+ + + ++ E G + SI+ + + + Sbjct: 69 MGDKLRAMREEKGLTLEELGRHLDLSVTYLSEIELGERTPSIQTLQKISRYFNVPISLFL 128 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E A G +++ R+ KGM+Q + + ++ E G+ Sbjct: 129 HTEGK--------------LIATGKKIRMTRETKGMTQKQLANAAQISPGLVAQLETGKV 174 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 P +K +I + + ++ E Sbjct: 175 QPSLKTIERISKALSVSVCYLILEQEDAE 203 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 68/161 (42%), Gaps = 16/161 (9%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K IR N T +E++ N + + E G + + D++ Sbjct: 4 KQLKKIRTKNKLTIEELSKACNLPLAYLKEVEEGKRELTSKAL-----------DYLLAN 52 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 +D E + +G +L+++R++KG++ E G+ L + + LS E G P Sbjct: 53 LDLDEDIEAL----HFSTSGMGDKLRAMREEKGLTLEELGRHLDLSVTYLSEIELGERTP 108 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSK 194 I+ +KI + + ++ E + + K+ + + +K Sbjct: 109 SIQTLQKISRYFNVPIS-LFLHTEGKLIATGKKIRMTRETK 148 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 2/105 (1%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVN 62 P ++T K + + + I+ + K + G +I+ R+ TQK++A A V Sbjct: 108 PSIQTLQKISRYFNVPISLFLHTEGKLIATGKKIRMTRETKGMTQKQLANAAQISPGLVA 167 Query: 63 LFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 E G S++ + +S ++ + + Sbjct: 168 QLETGKVQPSLKTIERISKALSVSVCYLILEQEDAEGIIAGITPE 212 >gi|323702211|ref|ZP_08113878.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323532898|gb|EGB22770.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 255 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 17/159 (10%) Query: 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 T ++ EI +G +I+ IR NN + +E+A S ++ E G ++ Sbjct: 59 KTQLVEGEITDSGLSLGEKIRIIRTENNMSLQELADKIGISLSYLSEIERGTVYPALNTL 118 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + + + E ++G +LK +R++ G++Q + L Sbjct: 119 KRVAEGLGVPATALMGHEG-----------------SLGYKLKHLREEYGLTQAQLANLA 161 Query: 137 GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 G+ + EQG+ P +K K+ +V + Sbjct: 162 GVTAGLIGQIEQGKVQPSLKTLEKLSEVMGVSPCYFIME 200 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 12/144 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +I+ +R+ T +++A A S ++ E G S++ L ++ + + Sbjct: 5 GDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKTQLVE 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 GE+ D ++G +++ IR + MS E +G+ S LS E+G Sbjct: 65 GEITDSG------------LSLGEKIRIIRTENNMSLQELADKIGISLSYLSEIERGTVY 112 Query: 153 PEIKPARKIKQVTKKHLDWIYFGD 176 P + +++ + + + Sbjct: 113 PALNTLKRVAEGLGVPATALMGHE 136 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +++++R+++G + + + + S LS E+G P +K K+ Sbjct: 1 MIVRGDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKT 60 Query: 171 WIYFGD 176 + G+ Sbjct: 61 QLVEGE 66 >gi|302388655|ref|YP_003824476.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302199283|gb|ADL06853.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 257 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 17/159 (10%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P + + +G +I +R+ + E+A A + + E G S+ L Sbjct: 65 EPTENRNSRSIGEKIALLRQEKGISLSELAEKAGISATYLCQIEKGNALPSLSTLKALAE 124 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 ++ + + +G ++K IR+++G++Q+E K G+ Sbjct: 125 ALCMTAQDLM-----------------VATSHVGYKIKKIRQERGLTQVELAKKAGVSTG 167 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 + E GR P +K KI + D+ I Sbjct: 168 LIGQIESGRVEPSLKTLEKIAHALSLSPCYFVTDDDEIA 206 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 10/141 (7%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I++IR+ N + +E+A A+ S ++ E G+ S+ + N IS + ++ Sbjct: 4 GKLIRNIRRKRNMSLQELARRADLSVSYLSEIERGIKQPSLETIEKMANALNISKNALFG 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 E + R +IG ++ +R++KG+S E + G+ + L E+G + Sbjct: 64 AEPTENRNSR----------SIGEKIALLRQEKGISLSELAEKAGISATYLCQIEKGNAL 113 Query: 153 PEIKPARKIKQVTKKHLDWIY 173 P + + + + + Sbjct: 114 PSLSTLKALAEALCMTAQDLM 134 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 39/99 (39%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 ++LK+L E + ++ VG +IK IR+ TQ E+A A + E+G Sbjct: 117 STLKALAEALCMTAQDLMVATSHVGYKIKKIRQERGLTQVELAKKAGVSTGLIGQIESGR 176 Query: 69 CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 S++ + + +S + + N + Sbjct: 177 VEPSLKTLEKIAHALSLSPCYFVTDDDEIASLLRPMNPE 215 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +++IR+ + MS E + + S LS E+G P ++ K+ + Sbjct: 1 MIDGKLIRNIRRKRNMSLQELARRADLSVSYLSEIERGIKQPSLETIEKMANALNISKNA 60 Query: 172 IYFGD 176 ++ + Sbjct: 61 LFGAE 65 >gi|332798117|ref|YP_004459616.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695852|gb|AEE90309.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 253 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 17/148 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I IR+ N + E+A S + E+G ++ + ++ + + Sbjct: 72 IGAKIALIRQEKNLSLSELAEKVGISPSYLCQIESGRAMPALSTLKSIAKALDVKPENLM 131 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +G ++K IR ++ ++Q E + G+ + E G+ Sbjct: 132 AAASF-----------------VGYKIKKIRCERKITQAELAEKAGVSTGLIGQIESGKV 174 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVI 179 P IK KI + DE + Sbjct: 175 EPSIKTLEKIAAALSLSPCFFVSEDEEL 202 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 13/138 (9%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I+ +R+ N T +++A A S ++ E G S+ L IS + + Sbjct: 7 IRSLRQKRNMTLQDLAQQAGLSVSYLSEIELGKKQPSLETIDKLAQALNISREGLISSSS 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 A++ IR++K +S E + +G+ S L E GR +P + Sbjct: 67 AGAGGIG-------------AKIALIRQEKNLSLSELAEKVGISPSYLCQIESGRAMPAL 113 Query: 156 KPARKIKQVTKKHLDWIY 173 + I + + + Sbjct: 114 STLKSIAKALDVKPENLM 131 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 27/76 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK IR TQ E+A A + E+G SI+ + +S + Sbjct: 137 VGYKIKKIRCERKITQAELAEKAGVSTGLIGQIESGKVEPSIKTLEKIAAALSLSPCFFV 196 Query: 92 DGEVIDRRYEDVTNKK 107 + N K Sbjct: 197 SEDEELSSILKPMNPK 212 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++S+R+ + M+ + + G+ S LS E G+ P ++ K+ Q + Sbjct: 1 MIDHKLIRSLRQKRNMTLQDLAQQAGLSVSYLSEIELGKKQPSLETIDKLAQALNISREG 60 Query: 172 IY 173 + Sbjct: 61 LI 62 >gi|134298768|ref|YP_001112264.1| helix-turn-helix domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051468|gb|ABO49439.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1] Length = 255 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 17/160 (10%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 T ++ EI +G +I+ IR + +E+A S ++ E G ++ Sbjct: 58 SKTQLVEGEITDSGLGLGEKIRIIRNETGLSLQELADKIGISLSYLSEIERGTVYPALNT 117 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + E ++G +LK +R++ G++Q + L Sbjct: 118 LKRVAEGLGVPATALMGHEG-----------------SLGYKLKHLREEYGLTQAQLANL 160 Query: 136 LGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 G+ + EQG+ P +K K+ +V + Sbjct: 161 AGVTAGLIGQIEQGKVQPSLKTLEKLSEVMGVSPCYFIME 200 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 12/144 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +I+ +R+ T +++A A S ++ E G S++ L +S + + Sbjct: 5 GDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVSKTQLVE 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 GE+ D +G +++ IR + G+S E +G+ S LS E+G Sbjct: 65 GEITDSG------------LGLGEKIRIIRNETGLSLQELADKIGISLSYLSEIERGTVY 112 Query: 153 PEIKPARKIKQVTKKHLDWIYFGD 176 P + +++ + + + Sbjct: 113 PALNTLKRVAEGLGVPATALMGHE 136 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +++++R+++G + + + + S LS E+G P +K K+ Sbjct: 1 MIVRGDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVSKT 60 Query: 171 WIYFGD 176 + G+ Sbjct: 61 QLVEGE 66 >gi|322383375|ref|ZP_08057160.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152334|gb|EFX45155.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 5/174 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G RIK +R+ TQ+E+A + V+ +E G + L + + +S D Sbjct: 10 KQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIFNVSAD 69 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 ++ D + + IG +K R+ + M+Q E GK +G +S+YE Sbjct: 70 YLLGRGGNDEFVTPPEDNQGGAVSEIGWAIKLERQSQDMTQKELGKQVGENQRQISSYEL 129 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFG----DEVIVPKSIKRAKGNQSSKKSKK 198 KI +V DE I P A + +K+++ Sbjct: 130 DLKPVPEHTLDKIMEVFGLSFPEFLAKYNMWDESIHPHFDGDANKQIAFEKAQE 183 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVT 165 L+ +G R+K +R++KG++Q E ++L M +T+S+YE GR+ P R + + Sbjct: 5 NNLEKKQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIF 64 Query: 166 KKHLDWIY---FGDEVIVP 181 D++ DE + P Sbjct: 65 NVSADYLLGRGGNDEFVTP 83 >gi|167462393|ref|ZP_02327482.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 5/174 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G RIK +R+ TQ+E+A + V+ +E G + L + + +S D Sbjct: 7 KQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIFNVSAD 66 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 ++ D + + IG +K R+ + M+Q E GK +G +S+YE Sbjct: 67 YLLGRGGNDEFVTPPEDNQGGAVSEIGWAIKLERQSQDMTQKELGKQVGENQRQISSYEL 126 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFG----DEVIVPKSIKRAKGNQSSKKSKK 198 KI +V DE I P A + +K+++ Sbjct: 127 DLKPVPEHTLDKIMEVFGLSFPEFLAKYNMWDESIHPHFDGDANKQIAFEKAQE 180 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 4/80 (5%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQV 164 L+ +G R+K +R++KG++Q E ++L M +T+S+YE GR+ P R + + Sbjct: 1 MNNLEKKQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADI 60 Query: 165 TKKHLDWIY---FGDEVIVP 181 D++ DE + P Sbjct: 61 FNVSADYLLGRGGNDEFVTP 80 >gi|83590661|ref|YP_430670.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573575|gb|ABC20127.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 252 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+++R+ + +++A A S ++ E G S++ + + + + + Sbjct: 5 GKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPREQLIE 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 A G R++ +R+ G + + G+ S LS E+G Sbjct: 65 TGGEG-------------GLAPGERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNVY 111 Query: 153 PEIKPARKIKQVTKKHL 169 P I +KI + L Sbjct: 112 PAIDTLKKITAALEVPL 128 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 17/144 (11%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ +R+ K +A A S ++ E G +I + E+ + Sbjct: 74 GERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKITAALEVPLSSVIG 133 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 ++G +L+ R+++G++Q E + G+ + EQG+ Sbjct: 134 TGG-----------------SLGHKLRQAREERGLTQAELARAAGVSAGLIGQIEQGKVQ 176 Query: 153 PEIKPARKIKQVTKKHLDWIYFGD 176 P +K ++ V + D Sbjct: 177 PSLKTLERVGAVLDISPCYFIADD 200 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 3/97 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R+ TQ E+A A + E G S++ + +IS + Sbjct: 138 LGHKLRQAREERGLTQAELARAAGVSAGLIGQIEQGKVQPSLKTLERVGAVLDISPCYFI 197 Query: 92 ---DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 G ++ L + + L+ I Sbjct: 198 ADDAGVDEVLNQMSPELRQLLIEPQVQSVLRLICNCN 234 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G R++ +R+++G S + + G+ S LS E+G P +K K+ + + Sbjct: 1 MRVCGKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPRE 60 Query: 171 WIY 173 + Sbjct: 61 QLI 63 >gi|296134047|ref|YP_003641294.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296032625|gb|ADG83393.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 255 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 14/150 (9%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI+ +R+ + + + ++ E G ++ + + Sbjct: 71 NIGDRIRALREEKGLSLVDFGNLTGLSFTYLSELERGTTVPAVGTLKKIAACLGVPVSLF 130 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + E + I +L+ RK KG++Q E G+ + E G+ Sbjct: 131 IENERKNSI--------------IAEKLQYARKMKGLTQKELAVRAGISPGLVGQIEMGK 176 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 +K KI QV + ++ E + Sbjct: 177 VNASLKTIEKISQVLGVSVCYLILDREEVE 206 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + + +++ RK TQKE+A+ A V E G + S++ + Sbjct: 132 ENERKNSIIAEKLQYARKMKGLTQKELAVRAGISPGLVGQIEMGKVNASLKTIEKISQVL 191 Query: 84 EISFDWIY 91 +S ++ Sbjct: 192 GVSVCYLI 199 >gi|296491936|ref|YP_003662403.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] gi|289176823|emb|CBJ92992.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] Length = 291 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 12/156 (7%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G RI+ RK T + + + ++ E+G I + + + I W Sbjct: 106 KNIGLRIQIWRKTMMLTAAALGLSVGLSQQQISRNEHGKNRIHIDHLVNIALALGIPISW 165 Query: 90 IYDG-----EVIDRRYEDVTNKKRLDPYAIGAR-------LKSIRKDKGMSQIEFGKLLG 137 + EV + T K +D + ++ RK ++ K G Sbjct: 166 FFIDCHPDLEVNTSSHLPTTPTKIMDKPELEMMAKNIGQRIRVRRKKLNVTLQGLAKQAG 225 Query: 138 MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 M TLS YE G+ I +DW + Sbjct: 226 MNQQTLSRYETGKKRITSTDLVIIAIALNTPIDWFF 261 Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 13/159 (8%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++K +G R+ RK + +A E+ + ++E G+ + + + + Sbjct: 9 FFKSIGQRVCIRRKEAGLSTHTLAQHTGISEAQLIMYETGLDDIPLSHLIQISAGLNTPT 68 Query: 88 DWIYDGEVIDRRYEDVTNKKR------LDPYAIGA-------RLKSIRKDKGMSQIEFGK 134 W + D + + +D GA R++ RK ++ G Sbjct: 69 GWFFIDLYSDLYVSNASKLPHVSDGFIMDTLTTGAVTKNIGLRIQIWRKTMMLTAAALGL 128 Query: 135 LLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G+ +S E G+ I I + W + Sbjct: 129 SVGLSQQQISRNEHGKNRIHIDHLVNIALALGIPISWFF 167 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 1/106 (0%) Query: 6 FLETSLKSLQEYTLIIT-PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 + TS T I+ PE+ K++G RI+ RK N T + +A A + ++ + Sbjct: 175 EVNTSSHLPTTPTKIMDKPELEMMAKNIGQRIRVRRKKLNVTLQGLAKQAGMNQQTLSRY 234 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 E G + + + DW + +T+ K D Sbjct: 235 ETGKKRITSTDLVIIAIALNTPIDWFFIDYSSLDDDFPLTSLKSSD 280 >gi|147677406|ref|YP_001211621.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146273503|dbj|BAF59252.1| hypothetical transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 255 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 56/144 (38%), Gaps = 17/144 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R N + +E+A + S ++ E G ++ + + + Sbjct: 74 LGDKIRMLRAEKNMSLQELAQASGISLSYLSEIERGTVYPALTTLKRIAAGLSVPPAALI 133 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E +G +L+++R++ G++Q + + G+ + EQG+ Sbjct: 134 GHETT-----------------LGCKLRALREEYGLTQAQLASMAGVTAGLIGQIEQGKV 176 Query: 152 IPEIKPARKIKQVTKKHLDWIYFG 175 P +K KI +V + Sbjct: 177 QPSLKTLEKIAEVMGVTPCYFIME 200 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 12/147 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +I+ +R+ T +++A N S ++ E G S++ L ++ + Sbjct: 5 GEQIRALREERGYTLQDLARRTNLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKAQLIK 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 G+V D ++ +R +K MS E + G+ S LS E+G Sbjct: 65 GDVTDSGLSLGDK------------IRMLRAEKNMSLQELAQASGISLSYLSEIERGTVY 112 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDEVI 179 P + ++I + + + Sbjct: 113 PALTTLKRIAAGLSVPPAALIGHETTL 139 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 30/89 (33%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G +++ +R+ TQ ++A A + E G S++ + ++ Sbjct: 135 HETTLGCKLRALREEYGLTQAQLASMAGVTAGLIGQIEQGKVQPSLKTLEKIAEVMGVTP 194 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + V N + D Sbjct: 195 CYFIMESGAVDQMLSVMNPEVRDLLMHPN 223 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +++++R+++G + + + + S LS E+G P +K K+ Sbjct: 1 MIVRGEQIRALREERGYTLQDLARRTNLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKA 60 Query: 171 WIYFGD 176 + GD Sbjct: 61 QLIKGD 66 >gi|330985511|gb|EGH83614.1| AraC family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 7/144 (4%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + R+ +R TQ+E+ A S ++ +E+G + ++ + L + +S D Sbjct: 2 NETFAERLAHLRAEKGLTQRELGAAAGVAWSMISKYESGKSAPRLKVLMKLADALGVSAD 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + + K +RL + R + S+ + + G+ L++ E Sbjct: 62 EL-------KGALSKQTNKLKIYDGFSSRLIAARANAAFSRKKLCEATGLSGDDLADMEL 114 Query: 149 GRTIPEIKPARKIKQVTKKHLDWI 172 G +P + +KI +D + Sbjct: 115 GDLLPSPEDVKKIAHALGTSVDSL 138 >gi|300856826|ref|YP_003781810.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436941|gb|ADK16708.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 314 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 15/137 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IKD+RK TQ+++A +S++ + E+ S + L ++++ D++ Sbjct: 2 LGDKIKDLRKLKKITQQKLAKSIGLSQSSIGMIESNKQGASNETLVKLAKLFDVTVDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + I+ +K R+ +G++Q E +G+ + L+ YE Sbjct: 62 GTDEIENIGY---------------IIKEEREYQGITQKELSDAVGINENELAKYENNEA 106 Query: 152 IPEIKPARKIKQVTKKH 168 A+KI Sbjct: 107 PISQFLAKKIANFFDMS 123 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK K ++Q + K +G+ S++ E + + K+ ++ +D++ DE Sbjct: 6 IKDLRKLKKITQQKLAKSIGLSQSSIGMIESNKQGASNETLVKLAKLFDVTVDYLLGTDE 65 Query: 178 V 178 + Sbjct: 66 I 66 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 1/124 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G IK+ R+ TQKE++ E+ + +EN S A + N +++SF Sbjct: 67 ENIGYIIKEEREYQGITQKELSDAVGINENELAKYENNEAPISQFLAKKIANFFDMSFPA 126 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + D Y + + + + + + + + Sbjct: 127 FLNKYGL-YGDIPSQFNGDADWYESFKKAAYYDANSNTTPNKVAESSDIYETINKDMSNV 185 Query: 150 RTIP 153 IP Sbjct: 186 INIP 189 >gi|167630842|ref|YP_001681341.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167593582|gb|ABZ85330.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 272 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 17/142 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ +E+A A + E S+ L + +S + Sbjct: 69 LGQKLRLLREERGLALQELARLAGISIETLRAIEAEEVRPSVDTLRTLADHLNVSIPQLM 128 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 I RL+SIR+ G++Q E + G+ + EQG+ Sbjct: 129 GS-----------------LTVIATRLRSIREQLGLTQAEVAERAGVSPGLIGQIEQGKV 171 Query: 152 IPEIKPARKIKQVTKKHLDWIY 173 P ++ ++ + + Sbjct: 172 QPSLRTIERVAEAVGVTPCYFL 193 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 15/138 (10%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I+ +R+ + +E++ + S ++ E G + R + + E Sbjct: 6 IRRVREEKGLSLQEVSRLSGVSVSYLSEIERGTKQPAPRIIDKISTALG-----LKREEG 60 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 E +K L+ +R+++G++ E +L G+ TL E P + Sbjct: 61 NPEGGEIGLGQK----------LRLLREERGLALQELARLAGISIETLRAIEAEEVRPSV 110 Query: 156 KPARKIKQVTKKHLDWIY 173 R + + + Sbjct: 111 DTLRTLADHLNVSIPQLM 128 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%) Query: 10 SLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 +L++L ++ + P++ + TR++ IR+ TQ E+A A + E G Sbjct: 112 TLRTLADHLNVSIPQLMGSLTVIATRLRSIREQLGLTQAEVAERAGVSPGLIGQIEQGKV 171 Query: 70 STSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 S+R + ++ + + V + +++R +++ Sbjct: 172 QPSLRTIERVAEAVGVTPCYFLVPQPSLENLLPVLGDDLIRLLGEPPIQQTLRMIYDLNE 231 Query: 130 IEFGKLLGM 138 E L G+ Sbjct: 232 AELRFLFGV 240 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +R++KG+S E +L G+ S LS E+G P + KI Sbjct: 1 MDHTWIRRVREEKGLSLQEVSRLSGVSVSYLSEIERGTKQPAPRIIDKISTALG 54 >gi|187935844|ref|YP_001893672.1| putative LexA repressor [Clostridium botulinum B str. Eklund 17B] gi|187723996|gb|ACD14202.1| putative LexA repressor [Clostridium botulinum B str. Eklund 17B] Length = 235 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 6/149 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K +R N Q+++A+ S ++ +E ++ + + N + ++ + + Sbjct: 10 KNLKKLRTFNKMKQEDLAVKIGVARSNISYYETQKSEPTLTPLINIANIFNVTINELVTV 69 Query: 94 EVIDRRYEDVTNKKRLDPYA------IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 E+ D ++ ++ LK +R K M QIE K + S +S YE Sbjct: 70 ELTDDIIQEKNQQQDNITKVFSSSEIFSKNLKELRIGKNMYQIELAKEVKTSKSNISFYE 129 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 GR+ P + +I L + D Sbjct: 130 SGRSEPTLGVLMRICDFFNIKLSELVSKD 158 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 3/87 (3%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R M Q + +G+ S +S YE ++ P + P I + ++ + Sbjct: 8 FSKNLKKLRTFNKMKQEDLAVKIGVARSNISYYETQKSEPTLTPLINIANIFNVTINELV 67 Query: 174 F---GDEVIVPKSIKRAKGNQSSKKSK 197 D++I K+ ++ + S+ Sbjct: 68 TVELTDDIIQEKNQQQDNITKVFSSSE 94 >gi|315612466|ref|ZP_07887379.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315447|gb|EFU63486.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 188 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 10/146 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +RK TQ ++A N +S +ENG + SI A L + +S ++ Sbjct: 1 MSNRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSTPYLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + D +S+ +D+G+S E + G+ ST+ NY QG Sbjct: 61 GLDDDSAT----------DESRKMTPFQSLVRDRGLSLKEISEATGIGYSTVGNYNQGSR 110 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDE 177 IP + A+ + + + ++ +E Sbjct: 111 IPNARNAQLLSEYFGVSIPYLLGYEE 136 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 39/84 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +RK+KG++Q + K+L S YE G+T I+ A+ + + ++ Sbjct: 1 MSNRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSTPYLL 60 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSK 197 D+ ++ QS + + Sbjct: 61 GLDDDSATDESRKMTPFQSLVRDR 84 >gi|258511056|ref|YP_003184490.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477782|gb|ACV58101.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 206 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 51/145 (35%), Gaps = 8/145 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 + G ++ +R A + ++A + ++ E + L + FD Sbjct: 5 NFGEYLRSLRLARKLSINQLAEKTGISAAHISRLERNVREVPRPDTLRKLALGLGVPFDE 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ- 148 + + + + RL+ +R+ KG+S + + G+ + L+ E Sbjct: 65 LLRAAGYSEEQYE------YNTKVLSRRLQRLRESKGLSLSDVAHIAGISEAYLARLESA 118 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIY 173 +P + ++ QV ++ Sbjct: 119 EGRLPGVTTLHRLAQVFDVTPAYLV 143 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 5/94 (5%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKK 167 +D G L+S+R + +S + + G+ + +S E+ R +P RK+ Sbjct: 1 MDTLNFGEYLRSLRLARKLSINQLAEKTGISAAHISRLERNVREVPRPDTLRKLALGLGV 60 Query: 168 HLDWIY----FGDEVIVPKSIKRAKGNQSSKKSK 197 D + + +E + ++ Q ++SK Sbjct: 61 PFDELLRAAGYSEEQYEYNTKVLSRRLQRLRESK 94 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 10/89 (11%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Query: 18 TLIITPEIRQYW-KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRY 75 + E +Y K + R++ +R++ + ++A A E+ + E+ + Sbjct: 68 AAGYSEEQYEYNTKVLSRRLQRLRESKGLSLSDVAHIAGISEAYLARLESAEGRLPGVTT 127 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 L ++++ ++ + + Sbjct: 128 LHRLAQVFDVTPAYLVGDTPDPKDNGPLD 156 >gi|258515474|ref|YP_003191696.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779179|gb|ACV63073.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 255 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 56/144 (38%), Gaps = 17/144 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R + +E++ + S ++ E G S+ + ++S + Sbjct: 74 LGNKIRMLRNEKALSLQELSTTSEISLSYLSEIERGTIYPSLNTLKKISESLDVSASVLM 133 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E ++G +LK++R+ +G +Q + +L G+ + EQ + Sbjct: 134 SYEG-----------------SLGNKLKALREKQGYTQAKLAELAGVTAGLIGQIEQSKV 176 Query: 152 IPEIKPARKIKQVTKKHLDWIYFG 175 P +K K+ V + Sbjct: 177 QPSLKTLEKLSGVLGISACYFIME 200 Score = 95.4 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 12/150 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +I+ +R+ T +E+A AN S ++ E G S++ L ++ + + Sbjct: 5 GEQIRALREERGYTLQELARRANLSFSYLSEIERGSKKPSLKTIEKLAAVLNVAKSQLVE 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 ++ D +G +++ +R +K +S E + S LS E+G Sbjct: 65 NDLNDAG------------LTLGNKIRMLRNEKALSLQELSTTSEISLSYLSEIERGTIY 112 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDEVIVPK 182 P + +KI + + + + K Sbjct: 113 PSLNTLKKISESLDVSASVLMSYEGSLGNK 142 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 +LK + E + + Y +G ++K +R+ TQ ++A A + E Sbjct: 116 NTLKKISESLDVSASVLMSYEGSLGNKLKALREKQGYTQAKLAELAGVTAGLIGQIEQSK 175 Query: 69 CSTSIRYALYLRNEYEISFDWIY 91 S++ L IS + Sbjct: 176 VQPSLKTLEKLSGVLGISACYFI 198 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +++++R+++G + E + + S LS E+G P +K K+ V Sbjct: 1 MIVRGEQIRALREERGYTLQELARRANLSFSYLSEIERGSKKPSLKTIEKLAAVLNVAKS 60 Query: 171 WIYFGD 176 + D Sbjct: 61 QLVEND 66 >gi|260888022|ref|ZP_05899285.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330838504|ref|YP_004413084.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260862273|gb|EEX76773.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329746268|gb|AEB99624.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 202 Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 12/151 (7%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K T++K +RK N TQ ++A + ++ ++ +E G+ S L + +EI Sbjct: 4 KIFSTKLKYLRKKANLTQVQLAEMLHISQAQISRYETGLDEPSEDCLQALSSAFEID--- 60 Query: 90 IYDGEVIDRRYEDVTNKKRLDPY-----AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 G+ + D RL++IR+ G SQ +F + LG+ S +S Sbjct: 61 ---GQSAALFWSSPLPDIPKDSSDGTSENFARRLRAIRQYHGKSQKDFAQFLGISQSLIS 117 Query: 145 NYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 E G+ P++ +K+ ++ L+W+ FG Sbjct: 118 ALEIGKATPDLVLIQKLGKM-GFDLEWLVFG 147 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +LK +RK ++Q++ ++L + + +S YE G P + + + Sbjct: 1 MDLKIFSTKLKYLRKKANLTQVQLAEMLHISQAQISRYETGLDEPSEDCLQALSSAFEID 60 >gi|332976136|gb|EGK13004.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 237 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 66/168 (39%), Gaps = 10/168 (5%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K +R + TQ+++ N + +++ +ENG + I + ++++ D++ Sbjct: 6 RLKKLRLEHKLTQEQLGKKINVTKVSISGYENGTRTPDIETLQKIAEVFDVTIDFLLGRT 65 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + LK +R + ++ E M + L++ E G+ P+ Sbjct: 66 DQSGVVQSENT--------FSKNLKRLRIKQNLTLKELATKAKMDHERLADLESGKIDPD 117 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + + + G + S ++ + N+ ++K D S Sbjct: 118 LNDIIDLSEALDAPEHVVSKG--TVFEISPEKLEQNRKELQAKFDLIS 163 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R + ++Q + GK + + ++S YE G P+I+ +KI +V +D+ Sbjct: 1 MNFPTRLKKLRLEHKLTQEQLGKKINVTKVSISGYENGTRTPDIETLQKIAEVFDVTIDF 60 Query: 172 IY 173 + Sbjct: 61 LL 62 Score = 42.2 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 19/51 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +K +R N T KE+A A + E+G + + L + Sbjct: 79 KNLKRLRIKQNLTLKELATKAKMDHERLADLESGKIDPDLNDIIDLSEALD 129 >gi|254975128|ref|ZP_05271600.1| hypothetical protein CdifQC_07430 [Clostridium difficile QCD-66c26] gi|255314255|ref|ZP_05355838.1| hypothetical protein CdifQCD-7_07890 [Clostridium difficile QCD-76w55] gi|255516934|ref|ZP_05384610.1| hypothetical protein CdifQCD-_07459 [Clostridium difficile QCD-97b34] gi|255650037|ref|ZP_05396939.1| hypothetical protein CdifQCD_07609 [Clostridium difficile QCD-37x79] Length = 182 Score = 98.9 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 4/138 (2%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + +++ N +S ++ ENG+ + + + +S D++ Sbjct: 4 LKKLRTEKGISLDKLSTDLNINKSTLSRIENGLREPKESFIKDCSDYFGVSTDYLIG--- 60 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 +D + RLK +RK K ++Q E KLL S ++ E + P Sbjct: 61 -KINIDDSNKLTKCLNSTFPIRLKELRKKKELTQAELSKLLNCSLSKIAMLETSKREPVK 119 Query: 156 KPARKIKQVTKKHLDWIY 173 + +I + +D++ Sbjct: 120 EDLLRISEFFNVSVDYLL 137 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 30/79 (37%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++RK TQ E++ N S + + E L + + +S D++ Sbjct: 81 RLKELRKKKELTQAELSKLLNCSLSKIAMLETSKREPVKEDLLRISEFFNVSVDYLLGKT 140 Query: 95 VIDRRYEDVTNKKRLDPYA 113 I+ K + Y Sbjct: 141 SIENYITTDEISKIIKSYE 159 >gi|217322927|ref|YP_002336061.1| transcriptional regulator, MerR family [Bacillus cereus AH187] gi|217068632|gb|ACJ82879.1| transcriptional regulator, MerR family [Bacillus cereus AH187] Length = 211 Score = 98.5 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 11/162 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +R + TQKE+A N A N +EN + + Y++ D + Sbjct: 6 LGQNLKHLRNSQKLTQKELASKINISYYAYNNWENDLREPDLLSLKKFSIYYDLLIDELV 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI----------GARLKSIRKDKGMSQIEFGKLLGMPNS 141 + ++I ++ N+K LD LK +R KG+S+ + + L P S Sbjct: 66 NTQIISSDSIEIQNQK-LDMIKNLEKKDILKPLEENLKRLRSLKGLSRKKIAEELNTPYS 124 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 T + +E G P+I I K ++ + + + + Sbjct: 125 TYAGWENGFREPDISTLNNIASYYKVSINDLLNPEAAVRDED 166 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 41/104 (39%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ +I E + K + +K +R ++K++A N S +ENG I Sbjct: 80 QKLDMIKNLEKKDILKPLEENLKRLRSLKGLSRKKIAEELNTPYSTYAGWENGFREPDIS 139 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + Y++S + + + E R + + RL + Sbjct: 140 TLNNIASYYKVSINDLLNPEAAVRDEDTLKLISRLSKNLFETYI 183 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G LK +R + ++Q E + + +N+E P++ +K Sbjct: 1 MTNTFLGQNLKHLRNSQKLTQKELASKINISYYAYNNWENDLREPDLLSLKKFSIYYDLL 60 Query: 169 LDWIYFGDEVIVPK-SIKRAKGNQSSKKSKKD 199 +D + + I+ K + KKD Sbjct: 61 IDELVNTQIISSDSIEIQNQKLDMIKNLEKKD 92 >gi|15896879|ref|NP_350228.1| transcription regulator [Clostridium acetobutylicum ATCC 824] gi|15026747|gb|AAK81568.1|AE007860_2 Predicted transcriptional regulator, containing DNA-binding domain of xre family [Clostridium acetobutylicum ATCC 824] gi|325511054|gb|ADZ22690.1| transcriptional regulator, containing DNA-binding domain of xre family [Clostridium acetobutylicum EA 2018] Length = 232 Score = 98.1 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 10/182 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +RK NN TQK++A ++ +E S + N ++ ++DWI Sbjct: 4 IGERLKYLRKLNNLTQKQVAEKTGVQRGNISHYEKNDFLPSRVALISFANFFKTNYDWIV 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYA---------IGARLKSIRKDKGMSQIEFGKLLGMPNST 142 G+ + D + + A RL K + L + Sbjct: 64 YGKGAIPKSIDEVMYAKSNSIAECNNGAAVDFSKRLIFTMKYFHETIDGLCLKLNISKDI 123 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + KI +DW++ G+ + K + + K K Sbjct: 124 FHEIL-IKKNVSAFDLFKICNYFNVSMDWMFNGNITYLKSDAKLQQAYLMNSKGNKPLSY 182 Query: 203 SN 204 N Sbjct: 183 DN 184 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG RLK +RK ++Q + + G+ +S+YE+ +P K + D Sbjct: 1 MNTIGERLKYLRKLNNLTQKQVAEKTGVQRGNISHYEKNDFLPSRVALISFANFFKTNYD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 WI +G I PKSI +S+ ++ + Sbjct: 61 WIVYGKGAI-PKSIDEVMYAKSNSIAECNN 89 >gi|260868457|ref|YP_003234859.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|257764813|dbj|BAI36308.1| predicted transcriptional regulator [Escherichia coli O111:H- str. 11128] Length = 233 Score = 98.1 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 5/176 (2%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKAN---NKTQKEMAIGANQLESAVNLFENG 67 L+ EY L I +Q+ G +I IR T E+A + E + +E+G Sbjct: 59 LEFTHEYALAIASTKQQHSIRSGNKIACIRTKREACGLTTTELARLLDLDEEIILQWESG 118 Query: 68 MCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 +I + L N + + + N + +IGAR+KS R G+ Sbjct: 119 EFEPTISMLIPLANVLGCDPLSLLSEKNSESAIR--VNTTEVHAESIGARIKSARTKLGL 176 Query: 128 SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 ++ + +++ + ++++E G + L W+ G + Sbjct: 177 TESDLARMIHTYSDPINDWECGICEVPADHIVPLASALNCDLMWLLTGKSEAKEQQ 232 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 35/94 (37%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 + L + I + + +G RIK R T+ ++A + +N +E G+ Sbjct: 140 SLLSEKNSESAIRVNTTEVHAESIGARIKSARTKLGLTESDLARMIHTYSDPINDWECGI 199 Query: 69 CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 C + + L + W+ G+ + + Sbjct: 200 CEVPADHIVPLASALNCDLMWLLTGKSEAKEQQQ 233 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 34/110 (30%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 E+ FD + + + A +++ R+ G++ E +LL + + Sbjct: 53 EVGFDVLEFTHEYALAIASTKQQHSIRSGNKIACIRTKREACGLTTTELARLLDLDEEII 112 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSS 193 +E G P I + V + + + + S Sbjct: 113 LQWESGEFEPTISMLIPLANVLGCDPLSLLSEKNSESAIRVNTTEVHAES 162 >gi|291010159|ref|ZP_06568122.1| hypothetical protein SeryN2_37020 [Saccharopolyspora erythraea NRRL 2338] Length = 393 Score = 96.9 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 8 ETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGA---NQLESAVNLF 64 T +++L++ T+ I Q +G+++ +R+A +Q+ A +++++ F Sbjct: 215 RTEIEALRDATVPIPG--GQSPSQLGSKLTMLREAAGLSQRAAATQMRIDGINQASISAF 272 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPY--AIGARLKSIR 122 E+G S+ L N Y +S + + E + V ++ L +GARLK +R Sbjct: 273 ESGRAVPSVERLGALLNVYRVSIEESAEVEALRDAAVSVPGEQELAQRRGVLGARLKLLR 332 Query: 123 KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +SQ + G+ + +S++E GR +P ++ + V Sbjct: 333 ERAKLSQRGAAAVSGVSRTRISDFETGRDVPSVEKLGALLNVYDVS 378 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 5/143 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R A +Q++ A + ++ +E G S + L + Y++ Sbjct: 157 LGARLKTLRDAAGLSQRDAATLSGVDHREISHYELGERVPSEQRLGALLDAYDVPVAE-- 214 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL---GMPNSTLSNYEQ 148 E+ R V P +G++L +R+ G+SQ + G+ +++S +E Sbjct: 215 RTEIEALRDATVPIPGGQSPSQLGSKLTMLREAAGLSQRAAATQMRIDGINQASISAFES 274 Query: 149 GRTIPEIKPARKIKQVTKKHLDW 171 GR +P ++ + V + ++ Sbjct: 275 GRAVPSVERLGALLNVYRVSIEE 297 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 3 LNPFLETSLKSLQEYTLIITPEIR--QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 ++ +++L++ + + E Q +G R+K +R+ +Q+ A + + Sbjct: 293 VSIEESAEVEALRDAAVSVPGEQELAQRRGVLGARLKLLRERAKLSQRGAAAVSGVSRTR 352 Query: 61 VNLFENGMCSTSIRYALYLRNEYEIS 86 ++ FE G S+ L N Y++S Sbjct: 353 ISDFETGRDVPSVEKLGALLNVYDVS 378 >gi|134101979|ref|YP_001107640.1| hypothetical protein SACE_5523 [Saccharopolyspora erythraea NRRL 2338] gi|133914602|emb|CAM04715.1| hypothetical protein SACE_5523 [Saccharopolyspora erythraea NRRL 2338] Length = 5856 Score = 96.9 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 8 ETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGA---NQLESAVNLF 64 T +++L++ T+ I Q +G+++ +R+A +Q+ A +++++ F Sbjct: 1656 RTEIEALRDATVPIPG--GQSPSQLGSKLTMLREAAGLSQRAAATQMRIDGINQASISAF 1713 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPY--AIGARLKSIR 122 E+G S+ L N Y +S + + E + V ++ L +GARLK +R Sbjct: 1714 ESGRAVPSVERLGALLNVYRVSIEESAEVEALRDAAVSVPGEQELAQRRGVLGARLKLLR 1773 Query: 123 KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +SQ + G+ + +S++E GR +P ++ + V Sbjct: 1774 ERAKLSQRGAAAVSGVSRTRISDFETGRDVPSVEKLGALLNVYDVS 1819 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 5/143 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R A +Q++ A + ++ +E G S + L + Y++ Sbjct: 1598 LGARLKTLRDAAGLSQRDAATLSGVDHREISHYELGERVPSEQRLGALLDAYDVPVAE-- 1655 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL---GMPNSTLSNYEQ 148 E+ R V P +G++L +R+ G+SQ + G+ +++S +E Sbjct: 1656 RTEIEALRDATVPIPGGQSPSQLGSKLTMLREAAGLSQRAAATQMRIDGINQASISAFES 1715 Query: 149 GRTIPEIKPARKIKQVTKKHLDW 171 GR +P ++ + V + ++ Sbjct: 1716 GRAVPSVERLGALLNVYRVSIEE 1738 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 12/172 (6%) Query: 3 LNPFLETSLKSLQEY--TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLE-- 58 ++ L++L + + PE + ++G ++K+ R+A T+ A A+ Sbjct: 1171 VSREERARLQALHDAVDSTRSAPESDRKRAELGNKLKEFREAARLTKAGAARAASLRVKQ 1230 Query: 59 --SAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 +A++ ENG L Y + + E + +GA Sbjct: 1231 GGNAISRIENG-GIPEKEQLRALLEVYRVP-----EEEREELEALRDAVDPTRLSGVLGA 1284 Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 RLK +R+ +SQ + G+ + +S E GR +P ++ + V Sbjct: 1285 RLKLLRERAKLSQCGAAAVSGVSRTRISAGETGRAVPSVEQLGALLNVYDVS 1336 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 3 LNPFLETSLKSLQEYTLIITPEIR--QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 ++ +++L++ + + E Q +G R+K +R+ +Q+ A + + Sbjct: 1734 VSIEESAEVEALRDAAVSVPGEQELAQRRGVLGARLKLLRERAKLSQRGAAAVSGVSRTR 1793 Query: 61 VNLFENGMCSTSIRYALYLRNEYEIS 86 ++ FE G S+ L N Y++S Sbjct: 1794 ISDFETGRDVPSVEKLGALLNVYDVS 1819 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 13/154 (8%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQ------LESAVNLFENGMCSTSIRYALYLR 80 Q +G +K +RKA Q+++A + +S V+L E+G + R L + Sbjct: 1107 QQRVVLGAALKRLRKAKKLAQRDIATWLKEGGEDRGAQSTVSLIESGRYPPNRRELLIML 1166 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPY--AIGARLKSIRKDKGMSQIEFGKLLGM 138 N Y +S + + + + + D +G +LK R+ +++ + + Sbjct: 1167 NAYGVSREERARLQALHDAVDSTRSAPESDRKRAELGNKLKEFREAARLTKAGAARAASL 1226 Query: 139 PNS----TLSNYEQGRTIPEIKPARKIKQVTKKH 168 +S E G IPE + R + +V + Sbjct: 1227 RVKQGGNAISRIENGG-IPEKEQLRALLEVYRVP 1259 Score = 36.9 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 7/99 (7%) Query: 80 RNEYE-ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 Y DW + + +GA LK +RK K ++Q + L Sbjct: 1077 AEVYNGADTDWAHWADTDTSHTATGEQTLAQQRVVLGAALKRLRKAKKLAQRDIATWLKE 1136 Query: 139 ------PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ST+S E GR P + + + Sbjct: 1137 GGEDRGAQSTVSLIESGRYPPNRRELLIMLNAYGVSREE 1175 >gi|228962231|ref|ZP_04123669.1| hypothetical protein bthur0005_55850 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797460|gb|EEM44635.1| hypothetical protein bthur0005_55850 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 217 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 11/162 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +R + TQKE+A + A N +EN + + Y++ D + Sbjct: 12 LGQNLKYLRNSQKLTQKELASRIDISYYAYNNWENDLREPDLLSLKKFSIYYDLLIDELV 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI----------GARLKSIRKDKGMSQIEFGKLLGMPNS 141 + ++I ++ N+K LD LK +R KG+S+ + + L P S Sbjct: 72 NTQIISSDSIEIQNQK-LDMIKKLEKKDVLKPLEENLKRLRSLKGLSRKKIAEELNTPYS 130 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 T + +E G P+I I K ++ + + + + Sbjct: 131 TYAGWENGFREPDISTLNNIASYYKVSINDLLNPEAAVRDED 172 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 41/104 (39%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ +I E + K + +K +R ++K++A N S +ENG I Sbjct: 86 QKLDMIKKLEKKDVLKPLEENLKRLRSLKGLSRKKIAEELNTPYSTYAGWENGFREPDIS 145 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + Y++S + + + E R + + RL + Sbjct: 146 TLNNIASYYKVSINDLLNPEAAVRDEDTLKLISRLSKNLFETYI 189 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G LK +R + ++Q E + + +N+E P++ +K Sbjct: 7 MTNTFLGQNLKYLRNSQKLTQKELASRIDISYYAYNNWENDLREPDLLSLKKFSIYYDLL 66 Query: 169 LDWIYFGDEVIVPK-SIKRAKGNQSSKKSKKD 199 +D + + I+ K + K KKD Sbjct: 67 IDELVNTQIISSDSIEIQNQKLDMIKKLEKKD 98 >gi|253578955|ref|ZP_04856226.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849898|gb|EES77857.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 184 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 10/172 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK++R + Q E+ ++ E G S + + D++ Sbjct: 3 IGKRIKELRTEADLLQSELGKAVAVSSQVISNIERGYTKPSTELVNRCAKYFGVPADYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + L A++K ++ + +P + + G Sbjct: 63 GRTTEKYSTTEQKEAPAL-----SAKIKDRMDQLQLNPSDLITKSEIPEDSFEDIMTGTV 117 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA-----KGNQSSKKSKK 198 IP I A ++ + +D++ E + + + Q SKK K+ Sbjct: 118 IPGIDVAGRLSKALDTSIDYLVGNSEYSCAIASEDEQDIILRYRQLSKKGKR 169 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R + + Q E GK + + + +SN E+G T P + + + D+ Sbjct: 1 MTIGKRIKELRTEADLLQSELGKAVAVSSQVISNIERGYTKPSTELVNRCAKYFGVPADY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK-KSKKDKKSSNP 205 + + ++ S+K K + D+ NP Sbjct: 61 LLGRTTEKYSTTEQKEAPALSAKIKDRMDQLQLNP 95 Score = 41.5 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 26/95 (27%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 T + ++ + +IKD ++ + E + G I A Sbjct: 66 TEKYSTTEQKEAPALSAKIKDRMDQLQLNPSDLITKSEIPEDSFEDIMTGTVIPGIDVAG 125 Query: 78 YLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPY 112 L + S D++ + + Y Sbjct: 126 RLSKALDTSIDYLVGNSEYSCAIASEDEQDIILRY 160 >gi|256848082|ref|ZP_05553526.1| predicted protein [Lactobacillus coleohominis 101-4-CHN] gi|256715142|gb|EEU30119.1| predicted protein [Lactobacillus coleohominis 101-4-CHN] Length = 273 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 19/139 (13%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI ++RK T +++A + + ++ +E G + + L N +++ +I Sbjct: 9 NRIAELRKEKGLTLQQVADAVSVGNNTISRYETGKREPKLETWMKLANVFDVPVSYIMGT 68 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + ++ R S ++ G+ L + EQ T+P Sbjct: 69 DN-------------------INAIRETRILHNTSLGSLAEMTGISEKRLKSIEQFETVP 109 Query: 154 EIKPARKIKQVTKKHLDWI 172 ++ I +V + I Sbjct: 110 TVQEWFLIAEVLCVPVSEI 128 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+ +RK+KG++ + + + N+T+S YE G+ P+++ K+ V + +I Sbjct: 7 PRNRIAELRKEKGLTLQQVADAVSVGNNTISRYETGKREPKLETWMKLANVFDVPVSYIM 66 Query: 174 FGDEV 178 D + Sbjct: 67 GTDNI 71 >gi|319896743|ref|YP_004134936.1| hypothetical protein HIBPF04060 [Haemophilus influenzae F3031] gi|317432245|emb|CBY80597.1| conserved hypothetical protein [Haemophilus influenzae F3031] Length = 322 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 16/165 (9%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G R+K + N TQ E+A + A++ G R L + N + + Sbjct: 1 MTTLGERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPRNILEIANALGVDPN 59 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 W+ G + RLK++ +KG++Q EF ++G+ ++ Sbjct: 60 WLKYGSTKMTT--------------LSERLKALLVEKGINQTEFANMIGIAQPSMQKILA 105 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSS 193 G T + +I + D++ +GD + +++ ++ N + Sbjct: 106 GETR-NPRKIVEIAKELGTTPDYLLYGDMTVSHSTLENSQINNNQ 149 >gi|319775719|ref|YP_004138207.1| hypothetical protein HICON_10620 [Haemophilus influenzae F3047] gi|317450310|emb|CBY86526.1| conserved hypothetical protein [Haemophilus influenzae F3047] Length = 322 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 16/165 (9%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G R+K + N TQ E+A + A++ G R L + N + + Sbjct: 1 MTTLGERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPRNILEIANALGVDPN 59 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 W+ G + RLK++ +KG++Q EF ++G+ ++ Sbjct: 60 WLKYGSTKMTT--------------LSERLKALLVEKGINQTEFANMIGIAQPSMQKILA 105 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSS 193 G T + +I + D++ +GD + +++ ++ N + Sbjct: 106 GETR-NPRKIVEIAKELGTTPDYLLYGDMTVSHSTLENSQINNNQ 149 >gi|68249874|ref|YP_248986.1| hypothetical protein NTHI1517 [Haemophilus influenzae 86-028NP] gi|68058073|gb|AAX88326.1| hypothetical protein NTHI1517 [Haemophilus influenzae 86-028NP] Length = 322 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 16/165 (9%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G R+K + N TQ E+A + A++ G R L + N + + Sbjct: 1 MTTLGERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPRNILEIANALGVDPN 59 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 W+ G + + RLK++ +KG++Q EF ++G+ ++ Sbjct: 60 WLKYGSTKMTK--------------LSERLKALLVEKGINQTEFANMIGIAQPSMQKILA 105 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSS 193 G T + +I + D++ +GD + +++ ++ N + Sbjct: 106 GETR-NPRKIVEIAKELGTTPDYLLYGDMTVSHSTLENSQINNNQ 149 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/106 (11%), Positives = 31/106 (29%), Gaps = 6/106 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + R+K + Q E A + ++ G + R + + E + D Sbjct: 68 MTKLSERLKALLVEKGINQTEFANMIGIAQPSMQKILAGETR-NPRKIVEIAKELGTTPD 126 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLK-----SIRKDKGMSQ 129 ++ G++ ++ + +R+ Q Sbjct: 127 YLLYGDMTVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLHKQQ 172 >gi|329122224|ref|ZP_08250815.1| hypothetical protein HMPREF9095_0033 [Haemophilus aegyptius ATCC 11116] gi|327474070|gb|EGF19482.1| hypothetical protein HMPREF9095_0033 [Haemophilus aegyptius ATCC 11116] Length = 322 Score = 95.8 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 16/165 (9%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G R+K + N TQ E+A + A++ G R L + N + + Sbjct: 1 MTTLGERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQ-KPRNILEIANALGVDPN 59 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 W+ G RLK++ +KG++Q EF ++G+ ++ Sbjct: 60 WLKYGSTKMTTLSG--------------RLKALLVEKGINQTEFANMIGIAQPSMQKILA 105 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSS 193 G T + +I + D++ +GD + +++ ++ N + Sbjct: 106 GETR-NPRKIVEIAKELGTTPDYLLYGDMTVSHSTLENSQINNNQ 149 >gi|229002522|ref|ZP_04160600.1| hypothetical protein bmyco0003_56410 [Bacillus mycoides Rock3-17] gi|228758584|gb|EEM07719.1| hypothetical protein bmyco0003_56410 [Bacillus mycoides Rock3-17] Length = 213 Score = 95.0 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 9/161 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +RK TQKE+A + A N +EN + + Y+I D + Sbjct: 8 LGENLKHLRKLQQLTQKEVASKLDISYYAYNNWENSLREPDLLSIKKFSIYYDILIDELV 67 Query: 92 DGEVIDRRYEDVTNKKRLDP---------YAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + ++ + +++ + + LK +R KG+S+ + + L P ST Sbjct: 68 NTRILSSKPINISEDRLNIIKKLTKLDVLNPLQENLKRLRTLKGLSRKQISEELNTPYST 127 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 + +E G P+I I K ++ + + +I + Sbjct: 128 YAGWENGFREPDISTLNNISSYHKVSINDLLNPETIIREED 168 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +G LK +RK + ++Q E L + +N+E P++ +K Sbjct: 1 MFMENLFLGENLKHLRKLQQLTQKEVASKLDISYYAYNNWENSLREPDLLSIKKFSIYYD 60 Query: 167 KHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKD 199 +D + P +I + N K +K D Sbjct: 61 ILIDELVNTRILSSKPINISEDRLNIIKKLTKLD 94 >gi|285017009|ref|YP_003374720.1| hypothetical protein XALc_0188 [Xanthomonas albilineans GPE PC73] gi|283472227|emb|CBA14733.1| hypothetical protein XALc_0188 [Xanthomonas albilineans] Length = 270 Score = 94.6 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 9/169 (5%) Query: 17 YTLIITPEIRQYWKD----VGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGM--- 68 + I I KD +K +R+A TQ+E+A+ +S V +E+ Sbjct: 20 FIAICAGLISHPVKDCCMAFSHNLKRLRQARGMTQEELALACGWGGQSRVANYESNSPKA 79 Query: 69 CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + + +S + + V + + IG RLK +R+ GM+ Sbjct: 80 REPKLSELSAIAEALCVSITELLTDHDLGEIGSGVRQPALISGHMIGDRLKDLREAAGMN 139 Query: 129 QIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLDWIYFGD 176 Q EF + + E+ P K + ++WI G Sbjct: 140 QPEFAAIAKTSKQYVGRLEKGYNKDPNPKFIELWARHFGVRMEWITAGK 188 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 1/76 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 +G R+KD+R+A Q E A A + V E G + ++ + + +WI Sbjct: 125 IGDRLKDLREAAGMNQPEFAAIAKTSKQYVGRLEKGYNKDPNPKFIELWARHFGVRMEWI 184 Query: 91 YDGEVIDRRYEDVTNK 106 G++ + Sbjct: 185 TAGKLPKDAGSKDVQR 200 >gi|306519572|ref|ZP_07405919.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] Length = 176 Score = 94.3 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 4/134 (2%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 R + +++ N +S ++ ENG+ + + + +S D++ Sbjct: 2 RTEKGISLDKLSTDLNINKSTLSRIENGLREPKESFIKDCSDYFGVSTDYLIG----KIN 57 Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 +D + RLK +RK K ++Q E KLL S ++ E + P + Sbjct: 58 IDDSNKLTKCLNSTFPIRLKELRKKKELTQAELSKLLNCSLSKIAMLETSKREPVKEDLL 117 Query: 160 KIKQVTKKHLDWIY 173 +I + +D++ Sbjct: 118 RISEFFNVSVDYLL 131 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 30/79 (37%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++RK TQ E++ N S + + E L + + +S D++ Sbjct: 75 RLKELRKKKELTQAELSKLLNCSLSKIAMLETSKREPVKEDLLRISEFFNVSVDYLLGKT 134 Query: 95 VIDRRYEDVTNKKRLDPYA 113 I+ K + Y Sbjct: 135 SIENYITTDEISKIIKSYE 153 >gi|291288151|ref|YP_003504967.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885311|gb|ADD69011.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 273 Score = 92.3 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 12/146 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ + K Q ++ S ++ + +G + + E+ D+ Sbjct: 2 LGNKIRKLIKRKGIKQVDVCRAVGLSPSRLSNYLSGSREPDLETLSRIARFLEVKLDYFA 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G+ I E N +K +R+ +G ++ + + M L+ E G Sbjct: 62 YGDNIKNTKETGEN------------IKKMREKRGFTKNDLAAVAKMDVQALTRIELGYG 109 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDE 177 E + + + +E Sbjct: 110 EFERDLIENLASCLTCSVADLIGAEE 135 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +++ + K KG+ Q++ + +G+ S LSNY G P+++ +I + + LD+ Sbjct: 1 MLGNKIRKLIKRKGIKQVDVCRAVGLSPSRLSNYLSGSREPDLETLSRIARFLEVKLDYF 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +GD +IK K + K ++K+ Sbjct: 61 AYGD------NIKNTKETGENIKKMREKR 83 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 23/66 (34%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K+ G IK +R+ T+ ++A A A+ E G L + S Sbjct: 70 KETGENIKKMREKRGFTKNDLAAVAKMDVQALTRIELGYGEFERDLIENLASCLTCSVAD 129 Query: 90 IYDGEV 95 + E Sbjct: 130 LIGAEE 135 >gi|209808837|ref|YP_002274408.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257880760|ref|ZP_05660413.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257892130|ref|ZP_05671783.1| predicted protein [Enterococcus faecium 1,231,410] gi|257895014|ref|ZP_05674667.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260562584|ref|ZP_05833092.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|209528674|dbj|BAG74975.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257814988|gb|EEV43746.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257828490|gb|EEV55116.1| predicted protein [Enterococcus faecium 1,231,410] gi|257831393|gb|EEV58000.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260073094|gb|EEW61441.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 460 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 69/169 (40%), Gaps = 13/169 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST-SIRYALYLRNEYEISFDWIYD 92 RIK ++ KT K+++ + + + G + + L + + + ++ Sbjct: 134 NRIKFYIDSSKKTIKQISTETGINYTTLTNYYRGERNPRNTETWNILADYFHVPVSYLMG 193 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 + + L IG +K+IRK K M+Q +F +L+G+ S + + E R+ Sbjct: 194 LDETNVE---------LKNLNIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSN 244 Query: 153 PEIKPARKIKQVTKKHLDWIYFG---DEVIVPKSIKRAKGNQSSKKSKK 198 P IK I + + + D ++ P A+ +++++ Sbjct: 245 PSIKTLEAIARALDVPIVALINDSSTDNIVEPYESLTAENILLKQENEE 293 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 39/184 (21%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF--- 87 ++G IK+IRK+ N TQ + A S + EN + SI+ + ++ Sbjct: 205 NIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIVAL 264 Query: 88 -------------------DWIYDGEVIDRRYEDVTNKKRLDPYA--------------- 113 + + E + +YE + +KRL Sbjct: 265 INDSSTDNIVEPYESLTAENILLKQENEELKYEVESLRKRLYEIQQVVNQGAEKMIPNLK 324 Query: 114 -IGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K IRK GM+ +FG L ST++ +E GR IP K + I V + DW Sbjct: 325 DVSKRIKYIRKKLGMTMEQFGSHLSNSPKSTIATWESGRNIPSQKKLQLIAIVGETTTDW 384 Query: 172 IYFG 175 I +G Sbjct: 385 IKWG 388 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 44/208 (21%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+ I ++ T + S+VN + G+ + L + N S DWI Sbjct: 10 ERIRKIIESKGLTLERFGDLIGDTPISSVNNWLRGVSLPNKNRLLTIANIGNTSVDWIKW 69 Query: 93 G----------------------------------EVIDRRYEDVTNKKRLDPY------ 112 G E + + + L+P Sbjct: 70 GTLEEYIASYLIDSGYELYIKDFPEIPYKVFKDIQEKYSDTFSLDKDYELLNPIIKFTIG 129 Query: 113 -AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE-IKPARKIKQVTKKHLD 170 R+K + + G+ +TL+NY +G P + + + Sbjct: 130 GVTLNRIKFYIDSSKKTIKQISTETGINYTTLTNYYRGERNPRNTETWNILADYFHVPVS 189 Query: 171 WIYFGDEVIVP-KSIKRAKGNQSSKKSK 197 ++ DE V K++ ++ +KSK Sbjct: 190 YLMGLDETNVELKNLNIGNNIKNIRKSK 217 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KDV RIK IRK T ++ N +S + +E+G S + + E + D Sbjct: 324 KDVSKRIKYIRKKLGMTMEQFGSHLSNSPKSTIATWESGRNIPSQKKLQLIAIVGETTTD 383 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 WI G + + + + Sbjct: 384 WIKWGTLEEYITSYLIGIGYELYIKDFPEI 413 >gi|184153646|ref|YP_001841987.1| hypothetical protein LAR_0991 [Lactobacillus reuteri JCM 1112] gi|227364982|ref|ZP_03849023.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3] gi|325681705|ref|ZP_08161225.1| hypothetical protein HMPREF0536_10144 [Lactobacillus reuteri MM4-1A] gi|183224990|dbj|BAG25507.1| hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227069993|gb|EEI08375.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3] gi|324979017|gb|EGC15964.1| hypothetical protein HMPREF0536_10144 [Lactobacillus reuteri MM4-1A] Length = 266 Score = 91.9 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 63/157 (40%), Gaps = 6/157 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN-----QLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + R+K +R+ + TQ++++ + ++ +E + + N +++S Sbjct: 2 IMNRLKFLRRKKHLTQQQLSKELKKRNIKVSVALISSYEQEKIPFNKEKLQKIANYFDVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 +++ G + + + G + RK K M+Q E G +G+ +S Y Sbjct: 62 VNYL-TGRSNSKAPTLLDRVNFNEKGNPGNNIYVERKKKHMTQKELGMKIGVTREYISEY 120 Query: 147 EQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 E G I+ +K+ + ++ + +P S Sbjct: 121 ELGIRPIPIETLKKLSEALGSEASYLLGVNGKYLPHS 157 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 29/101 (28%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I RK + TQKE+ + ++ +E G+ I L ++ Sbjct: 89 GNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIPIETLKKLSEALGSEASYLLG 148 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + LD + + K + + Sbjct: 149 VNGKYLPHSMNDFILSLDDHELLKSTKELLHRLDWAYTTPA 189 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 5/85 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLG-----MPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 I RLK +R+ K ++Q + K L + + +S+YEQ + + +KI Sbjct: 1 MIMNRLKFLRRKKHLTQQQLSKELKKRNIKVSVALISSYEQEKIPFNKEKLQKIANYFDV 60 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQS 192 ++++ P + R N+ Sbjct: 61 SVNYLTGRSNSKAPTLLDRVNFNEK 85 >gi|227873925|ref|ZP_03992145.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840231|gb|EEJ50641.1| transcriptional regulator [Oribacterium sinus F0268] Length = 213 Score = 91.6 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++IK R TQ+++A ++ +ENG I + + Y +S D++ Sbjct: 4 DIGSKIKAARMEKKFTQEQVAEVLGVSRQTISNWENGKSYPDIISVIKMSECYGVSLDYL 63 Query: 91 YDGEVIDRRYEDV 103 GE Y D Sbjct: 64 LKGEEKMSGYYDF 76 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 37/62 (59%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R +K +Q + ++LG+ T+SN+E G++ P+I K+ + LD++ G+E Sbjct: 9 IKAARMEKKFTQEQVAEVLGVSRQTISNWENGKSYPDIISVIKMSECYGVSLDYLLKGEE 68 Query: 178 VI 179 + Sbjct: 69 KM 70 >gi|257883596|ref|ZP_05663249.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257819254|gb|EEV46582.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] Length = 383 Score = 91.6 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 69/169 (40%), Gaps = 13/169 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST-SIRYALYLRNEYEISFDWIYD 92 RIK ++ KT K+++ + + + G + + L + + + ++ Sbjct: 57 NRIKFYIDSSKKTIKQISTETGINYTTLTNYYRGERNPRNTETWNILADYFHVPVSYLMG 116 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 + + L IG +K+IRK K M+Q +F +L+G+ S + + E R+ Sbjct: 117 LDETNVE---------LKNLNIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSN 167 Query: 153 PEIKPARKIKQVTKKHLDWIYFG---DEVIVPKSIKRAKGNQSSKKSKK 198 P IK I + + + D ++ P A+ +++++ Sbjct: 168 PSIKTLEAIARALDVPIVALINDSSTDNIVEPYESLTAENILLKQENEE 216 Score = 91.2 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 39/184 (21%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF--- 87 ++G IK+IRK+ N TQ + A S + EN + SI+ + ++ Sbjct: 128 NIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIVAL 187 Query: 88 -------------------DWIYDGEVIDRRYEDVTNKKRLDPYA--------------- 113 + + E + +YE + +KRL Sbjct: 188 INDSSTDNIVEPYESLTAENILLKQENEELKYEVESLRKRLYEIQQVVNQGAEKMIPNLK 247 Query: 114 -IGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K IRK GM+ +FG L ST++ +E GR IP K + I V + DW Sbjct: 248 DVSKRIKYIRKKLGMTMEQFGSHLSNSPKSTIATWESGRNIPSQKKLQLIAIVGETTTDW 307 Query: 172 IYFG 175 I +G Sbjct: 308 IKWG 311 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KDV RIK IRK T ++ N +S + +E+G S + + E + D Sbjct: 247 KDVSKRIKYIRKKLGMTMEQFGSHLSNSPKSTIATWESGRNIPSQKKLQLIAIVGETTTD 306 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 WI G + + + + Sbjct: 307 WIKWGTLEEYITSYLIGIGYELYIKDFPEI 336 >gi|148544266|ref|YP_001271636.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|148531300|gb|ABQ83299.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] Length = 264 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 6/155 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGAN-----QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 R+K +R+ + TQ++++ + ++ +E + + N +++S + Sbjct: 2 NRLKFLRRKKHLTQQQLSKELKKRNIKVSVALISSYEQEKIPFNKEKLQKIANYFDVSVN 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 ++ G + + + G + RK K M+Q E G +G+ +S YE Sbjct: 62 YL-TGRSNSKAPTLLDRVNFNEKGNPGNNIYVERKKKHMTQKELGMKIGVTREYISEYEL 120 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 G I+ +K+ + ++ + +P S Sbjct: 121 GIRPIPIETLKKLSEALGSEASYLLGVNGKYLPHS 155 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 29/101 (28%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I RK + TQKE+ + ++ +E G+ I L ++ Sbjct: 87 GNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIPIETLKKLSEALGSEASYLLG 146 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + LD + + K + + Sbjct: 147 VNGKYLPHSMNDFILSLDDHELLKSTKELLHRLDWAYTTPA 187 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Query: 115 GARLKSIRKDKGMSQIEFGKLLG-----MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 RLK +R+ K ++Q + K L + + +S+YEQ + + +KI + Sbjct: 1 MNRLKFLRRKKHLTQQQLSKELKKRNIKVSVALISSYEQEKIPFNKEKLQKIANYFDVSV 60 Query: 170 DWIYFGDEVIVPKSIKRAKGNQS 192 +++ P + R N+ Sbjct: 61 NYLTGRSNSKAPTLLDRVNFNEK 83 >gi|291087102|ref|ZP_06345414.2| DNA-binding protein [Clostridium sp. M62/1] gi|291076197|gb|EFE13561.1| DNA-binding protein [Clostridium sp. M62/1] Length = 237 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E D+G++IK R TQ+++A ++ +EN I + + Y Sbjct: 16 EASGMEHDIGSKIKAARLEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECY 75 Query: 84 EISFDWIYDGEVIDRRYED 102 ++S D++ GE + Y D Sbjct: 76 DVSLDYLLKGEQKMKTYYD 94 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 41/84 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R +K ++Q + +LLG+ T+SN+E ++ P+I K+ + LD++ G++ Sbjct: 28 IKAARLEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLLKGEQ 87 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 + + K + K Sbjct: 88 KMKTYYDYLEESTNVVKSNANRNK 111 >gi|167751035|ref|ZP_02423162.1| hypothetical protein EUBSIR_02020 [Eubacterium siraeum DSM 15702] gi|167655953|gb|EDS00083.1| hypothetical protein EUBSIR_02020 [Eubacterium siraeum DSM 15702] Length = 226 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++IK R TQ+++A ++ +EN I + + + YE+S D++ Sbjct: 11 DIGSKIKAARLEKKLTQEQVAEILGVSRQTISNWENEKSYPDIISVIKMSDCYEVSLDYL 70 Query: 91 YDGEVIDRRYED 102 GE + Y D Sbjct: 71 LKGEQKMKTYYD 82 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 41/84 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R +K ++Q + ++LG+ T+SN+E ++ P+I K+ + LD++ G++ Sbjct: 16 IKAARLEKKLTQEQVAEILGVSRQTISNWENEKSYPDIISVIKMSDCYEVSLDYLLKGEQ 75 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 + + K + K Sbjct: 76 KMKTYYDYLEESTNVVKSNANRNK 99 >gi|292491070|ref|YP_003526509.1| hypothetical protein Nhal_0949 [Nitrosococcus halophilus Nc4] gi|291579665|gb|ADE14122.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 253 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 62/145 (42%), Gaps = 13/145 (8%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K R N TQ+++A + + ++ E G S + + L + +W+ Sbjct: 2 NLGERLKKARLEANMTQRQLAETSGVKQQMISKLEVGRASETSD-IVSLAKALGVRSEWL 60 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 GE R E + + +K +R+++G SQ E + + + + E Sbjct: 61 DSGEEPMRLGEYIADT-----------VKRLREEQGWSQSELARRVKVKPQNIQQLE-DG 108 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFG 175 T+ + + ++ +V ++ + G Sbjct: 109 TVKQPRYLMELARVFGVTVEELSSG 133 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 4/103 (3%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 E + + + +K +R+ +Q E+A + E+G RY + L Sbjct: 63 GEEPMRLGEYIADTVKRLREEQGWSQSELARRVKVKPQNIQQLEDGTVK-QPRYLMELAR 121 Query: 82 EYEISFDWIYDGEVIDRRYEDVT---NKKRLDPYAIGARLKSI 121 + ++ + + G ++ E RL A ++++I Sbjct: 122 VFGVTVEELSSGGPRSKKEETPEYVLRLSRLIASASPEKIRAI 164 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G RLK R + M+Q + + G+ +S E GR + + +W Sbjct: 1 MNLGERLKKARLEANMTQRQLAETSGVKQQMISKLEVGRASETSDIVS-LAKALGVRSEW 59 Query: 172 IYFGDEVI 179 + G+E + Sbjct: 60 LDSGEEPM 67 >gi|222151193|ref|YP_002560347.1| hypothetical protein MCCL_0944 [Macrococcus caseolyticus JCSC5402] gi|222120316|dbj|BAH17651.1| hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 189 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 2/145 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIG-ANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G +I+ IR +E N +S V+ +E G + I+ D Sbjct: 7 KAIGRKIQSIRLNLGMNTREFGEEILNSSDSLVSRWEKGKSVPRQDRLKRIAELGNITVD 66 Query: 89 WIYDG-EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + ++ + D IG R+K+IR+ KG+S EFG+ G + +SN+E Sbjct: 67 ELVTTLDYQSLYEQEKQKNIKNDARIIGQRIKNIRRSKGLSMREFGEYFGAQSGVVSNWE 126 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWI 172 + P K ++I + ++ + Sbjct: 127 NAKQTPNRKRLKQIAEFAGITVEEL 151 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 35/84 (41%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 I+ + +G RIK+IR++ + +E V+ +EN + + + + Sbjct: 84 KNIKNDARIIGQRIKNIRRSKGLSMREFGEYFGAQSGVVSNWENAKQTPNRKRLKQIAEF 143 Query: 83 YEISFDWIYDGEVIDRRYEDVTNK 106 I+ + + D + YE N+ Sbjct: 144 AGITVEELTDSIDYKQLYELECNR 167 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGK-LLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 +D AIG +++SIR + GM+ EFG+ +L +S +S +E+G+++P ++I ++ Sbjct: 1 MIFMDKKAIGRKIQSIRLNLGMNTREFGEEILNSSDSLVSRWEKGKSVPRQDRLKRIAEL 60 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 +D + + ++ K ++ + Sbjct: 61 GNITVDELVTTLDYQSLYEQEKQKNIKNDAR 91 >gi|253750928|ref|YP_003024069.1| DNA-binding protein [Streptococcus suis SC84] gi|253752827|ref|YP_003025967.1| DNA-binding protein [Streptococcus suis P1/7] gi|251815217|emb|CAZ50781.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251819072|emb|CAR44086.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|319757177|gb|ADV69119.1| putative DNA-binding protein [Streptococcus suis JS14] Length = 119 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + +I+ +R A N +Q E+A AV+ +ENG + I + L + +S D Sbjct: 1 MKQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ G+ ++ K + K Sbjct: 61 YLVLGKEPEKEIVVEQRGKMNGWEFLNEESKR 92 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +++ +R K +SQ E + L + +S +E G P+I ++ ++ LD Sbjct: 1 MKQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLD 60 Query: 171 WIYFGDEVIVPKSIKR 186 ++ G E +++ Sbjct: 61 YLVLGKEPEKEIVVEQ 76 >gi|146319855|ref|YP_001199566.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145690661|gb|ABP91166.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|292557469|gb|ADE30470.1| Helix-turn-helix motif-containing protein [Streptococcus suis GZ1] Length = 121 Score = 89.6 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K + +I+ +R A N +Q E+A AV+ +ENG + I + L + +S Sbjct: 2 IMKQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSL 61 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 D++ G+ ++ K + K Sbjct: 62 DYLVLGKEPEKEIVVEQRGKMNGWEFLNEESKR 94 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +++ +R K +SQ E + L + +S +E G P+I ++ ++ Sbjct: 1 MIMKQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 LD++ G E +++ Sbjct: 61 LDYLVLGKEPEKEIVVEQ 78 >gi|291530129|emb|CBK95714.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] gi|291556915|emb|CBL34032.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 219 Score = 89.6 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++IK R TQ+++A ++ +EN I + + + YE+S D++ Sbjct: 4 DIGSKIKAARLEKKLTQEQVAEILGVSRQTISNWENEKSYPDIISVIKMSDCYEVSLDYL 63 Query: 91 YDGEVIDRRYED 102 GE + Y D Sbjct: 64 LKGEQKMKTYYD 75 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 41/84 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R +K ++Q + ++LG+ T+SN+E ++ P+I K+ + LD++ G++ Sbjct: 9 IKAARLEKKLTQEQVAEILGVSRQTISNWENEKSYPDIISVIKMSDCYEVSLDYLLKGEQ 68 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 + + K + K Sbjct: 69 KMKTYYDYLEESTNVVKSNANRNK 92 >gi|134101965|ref|YP_001107626.1| hypothetical protein SACE_5483 [Saccharopolyspora erythraea NRRL 2338] gi|133914588|emb|CAM04701.1| hypothetical protein SACE_5483 [Saccharopolyspora erythraea NRRL 2338] Length = 11792 Score = 89.2 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 16/157 (10%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 R +T + +A S ++ +E G Y L Y +S + ++ Sbjct: 5498 RARGGRTLRGVARAIGVTHSTLSRWEKGRGDIDPHYRERLAAFYGVSQEELFA------- 5550 Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 + + RLK R G +Q E + +G+ STLSN+E GR + Sbjct: 5551 --------DIPEASGETRLKRERARVGRTQREVAEKIGVHLSTLSNWEHGRDNIAPRHRE 5602 Query: 160 KIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKK 195 ++ + ++ E +KRA+G ++ ++ Sbjct: 5603 RLAAFYGVSQEELFADMPEASGETGLKRARGGRTLRE 5639 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 17/139 (12%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R +TQ+E+A S ++ +E+G + + R+ L Y +S + ++ Sbjct: 5560 RLKRERARVGRTQREVAEKIGVHLSTLSNWEHGRDNIAPRHRERLAAFYGVSQEELFA-- 5617 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + LK R G + E + + ++TLS +E GR + Sbjct: 5618 -------------DMPEASGETGLKRARG--GRTLREVASAIEVTSATLSRWEHGRGDID 5662 Query: 155 IKPARKIKQVTKKHLDWIY 173 ++ + ++ Sbjct: 5663 PHYRERLAAFYGVSQEVLF 5681 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 1/136 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R++ +R+ +++ A A + +E+G + L + Y++S D Sbjct: 1777 LGSRLQTLREEAGFSKRAAAEEAKVYYGWILHYEDGRRVPTPGALRKLLDAYDVSGDERA 1836 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E + R +GA L S+R G+SQ E K G +++YE + Sbjct: 1837 AVEALHDAARSKLKLARQ-TATLGAELTSLRIKAGLSQHEAAKRAGFGQGRIADYEVNKF 1895 Query: 152 IPEIKPARKIKQVTKK 167 P + + V Sbjct: 1896 PPSSERLEALLSVYDV 1911 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 6/141 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI----SF 87 +G +++ +R+A +TQ + A +N ++ +E+G L Y + Sbjct: 2809 LGNKLRALREAKFETQTDAAKQSNIKAVSIGRYESGSRVPDPARTEALLELYGVRDAAQR 2868 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS-QIEFGKLLGMPNSTLSNY 146 + + + +G +L+ +R+ Q K + + S Y Sbjct: 2869 EEVMRLRDEAAGPRGQQEPSPV-RVVLGNKLRDLREAARFETQAAAAKQSNIKVRSFSRY 2927 Query: 147 EQGRTIPEIKPARKIKQVTKK 167 E G +P+ + ++ Sbjct: 2928 ESGSRVPDPARTEALLELYGV 2948 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 51/140 (36%), Gaps = 5/140 (3%) Query: 32 VGTRIKDIRKANNK-TQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF--- 87 +G +++ +R+A TQ A N + +E+G+ + L Y Sbjct: 2724 LGNKLRALREAARFETQAAAAKQLNITAMGIGRYESGVALPGSGWTKALLELYGADAAQR 2783 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + + +G +L+++R+ K +Q + K + ++ YE Sbjct: 2784 EEVMRLRDEAAGPRGQQEPSP-ERVVLGNKLRALREAKFETQTDAAKQSNIKAVSIGRYE 2842 Query: 148 QGRTIPEIKPARKIKQVTKK 167 G +P+ + ++ Sbjct: 2843 SGSRVPDPARTEALLELYGV 2862 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 71/242 (29%), Gaps = 61/242 (25%) Query: 19 LIITPEIRQYWKDVGTR-IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 + +P R+ + G ++ R+A TQ +A + V+ +E G Sbjct: 7818 AMASPRTREAARSKGKTPLRQAREAMGWTQAYVAEKLEVSSNTVSNWETGKTPMRSGDRE 7877 Query: 78 YLRNEYEISFDW-IYDGEVIDRRYEDVTNKKRLDPYAIGA-------------------- 116 LR Y S D ++DG R + A Sbjct: 7878 SLRVLYGRSTDETLFDGLPPVSDGIQAPESSRHERAAQYHEQEQVSGPTVQDKVVAEPEA 7937 Query: 117 ---------------------------------RLKSIRKDKGMSQIEFGKLLGMPNSTL 143 L+ R+ G ++ + L + + T+ Sbjct: 7938 LGRNLALGHSPAPPTIAMASPRTREAARSKGKTPLRQAREAMGWTRAYVAEKLEVSSDTV 7997 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDW-IYFG-----DEVIVPKSIKRAKGNQSSKKSK 197 SN+E G+T ++ + + D ++ G D + P+S + + Q Sbjct: 7998 SNWETGKTPMRSGDREILRVLYGRSTDETLFDGLPPVSDGIQAPESSRHERAAQYHDSDD 8057 Query: 198 KD 199 D Sbjct: 8058 DD 8059 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 7/129 (5%) Query: 31 DVGTRIKDIRKANNK-TQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI---- 85 ++G +++ +R+A TQ A + S + +E+G S L Y + Sbjct: 2637 ELGNKLRALREAARFETQAAAAKQLRKTPSRFSEYESGSQVPSSGRTKALLELYGVRDAA 2696 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS-QIEFGKLLGMPNSTLS 144 + + +G +L+++R+ Q K L + + Sbjct: 2697 QREEVMRLRDEAAGPRGQQEPSPA-RVVLGNKLRALREAARFETQAAAAKQLNITAMGIG 2755 Query: 145 NYEQGRTIP 153 YE G +P Sbjct: 2756 RYESGVALP 2764 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 11/168 (6%) Query: 8 ETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG 67 ++++L + RQ +G + +R +Q E A A + + +E Sbjct: 1835 RAAVEALHDAARSKLKLARQ-TATLGAELTSLRIKAGLSQHEAAKRAGFGQGRIADYEVN 1893 Query: 68 MCSTSIRYALYLRNEYEISFDW-------IYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 S L + Y++ W + + + + A+GA+L Sbjct: 1894 KFPPSSERLEALLSVYDV---WGERREQVVALRDKANSGRSPSEQEIVQQRGALGAKLWM 1950 Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +R G+++ + G+ ++++ E RT+P + V + Sbjct: 1951 LRDAAGLTRKKAAAKAGVKEWSIASVETRRTVPHADWLAALLDVYRAS 1998 Score = 41.5 bits (96), Expect = 0.066, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 1/87 (1%) Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 DW R +G+RL+++R++ G S+ + + + Sbjct: 1749 TDTDW-AHWAGTTRPVRAGEQPVTPQSGTLGSRLQTLREEAGFSKRAAAEEAKVYYGWIL 1807 Query: 145 NYEQGRTIPEIKPARKIKQVTKKHLDW 171 +YE GR +P RK+ D Sbjct: 1808 HYEDGRRVPTPGALRKLLDAYDVSGDE 1834 >gi|313890139|ref|ZP_07823774.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121500|gb|EFR44604.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 168 Score = 89.2 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 11/145 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+++K TQ E+A N +S +ENG + S+ A L + + +S ++ Sbjct: 3 NRLKELQKEKGLTQAELAQVINTNQSQYGKYENGKTNLSLENAKILSDYFGVSPAYLLGL 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E E + ++ KD+ +S E + G+ ST+ NY QG IP Sbjct: 63 ETEFEPVESRETQFQILV-----------KDRKLSLREISEDTGINYSTIGNYNQGTRIP 111 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEV 178 + A + + + ++ ++ Sbjct: 112 NARNAAILADYFRVSVGYLLGYEKE 136 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 37/89 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK ++K+KG++Q E +++ S YE G+T ++ A+ + ++ Sbjct: 1 MPNRLKELQKEKGLTQAELAQVINTNQSQYGKYENGKTNLSLENAKILSDYFGVSPAYLL 60 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + P + + K K + Sbjct: 61 GLETEFEPVESRETQFQILVKDRKLSLRE 89 >gi|224543830|ref|ZP_03684369.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM 15897] gi|224523249|gb|EEF92354.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM 15897] Length = 217 Score = 89.2 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++IK R TQ+++A ++ +EN I + + Y++S D++ Sbjct: 4 DIGSKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYL 63 Query: 91 YDGEVIDRRYED 102 GE + Y D Sbjct: 64 LKGEEKMKNYYD 75 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y IG+++K+ R +K ++Q + +LLG+ T+SN+E ++ P+I K+ + LD+ Sbjct: 3 YDIGSKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDY 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G+E + + K + K Sbjct: 63 LLKGEEKMKNYYDYLEESTNVVKSNTNRNK 92 >gi|291521732|emb|CBK80025.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 217 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK+ R TQ+++A ++ +EN I + + Y++S D++ Sbjct: 4 DIGCKIKEARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYL 63 Query: 91 YDGE--VIDRRYEDVTNKKRLDPYAIGARL 118 GE + + + A ++ Sbjct: 64 LKGERKMKSYYDYLEESTNVVKSNANRNKI 93 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 43/90 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + IG ++K R +K ++Q + +LLG+ T+SN+E ++ P+I K+ + LD+ Sbjct: 3 HDIGCKIKEARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDY 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G+ + + K + K Sbjct: 63 LLKGERKMKSYYDYLEESTNVVKSNANRNK 92 >gi|254478231|ref|ZP_05091612.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035827|gb|EEB76520.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM 12653] Length = 218 Score = 88.9 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 60/142 (42%), Gaps = 6/142 (4%) Query: 44 NKTQKEMAIGANQLESAVNLFENG--MCSTSIRYALYLRNEYE--ISFDWIYDGEVIDRR 99 N++ + A+ + ++ G + ++ ++++ + + Sbjct: 19 NRSINQYALQCGVSSAHISRLLRGLIDTPPNPETIKKFASKAHNGVTYEELMEAAGHIDS 78 Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 +T + + Y RL+ +R++KG+ Q + K+LG+ S YEQG+ P ++ + Sbjct: 79 SSQLTEQNQ--FYEFSQRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLK 136 Query: 160 KIKQVTKKHLDWIYFGDEVIVP 181 K+ +D++ ++ P Sbjct: 137 KLSDFFNVSIDYLLGRTDIRSP 158 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Q++ + R++ +R+ QK++A SA +E G S+ L + + Sbjct: 84 EQNQFY-EFSQRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFF 142 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDP--YAIGARLKSIRKDKGMSQIEF 132 +S D++ I +++T DP + LK R+D + + Sbjct: 143 NVSIDYLLGRTDIRSPVDEITEAVSDDPELFEFWNTLKE-REDLKLLFKQT 192 >gi|313895887|ref|ZP_07829441.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975312|gb|EFR40773.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 195 Score = 88.9 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 4/150 (2%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +RK TQ ++A + + ++ FE+G LR + D D Sbjct: 10 LRMLRKERGLTQTQLAGMMSLSQRQISRFESGKDMPRPETVTLLRQVCNLENDD--DWHA 67 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 R + + + +G R++ +R SQ F K LG+ S +S+ EQ T P Sbjct: 68 ALERAKKDADASKAADDTVGRRIRVMRTYFKQSQESFAKELGISQSAMSSMEQDLTSPPY 127 Query: 156 KPARKIKQVTKKHLDWIYFGD-EVIVPKSI 184 + + ++ +L+WI +GD + + P+++ Sbjct: 128 EVLCALGRM-GFNLNWILYGDADDLSPRAV 156 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 6/90 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ +R ++Q+ A +SA++ E + S L + +WI Sbjct: 86 VGRRIRVMRTYFKQSQESFAKELGISQSAMSSMEQDLTSPPYEVLCALGRM-GFNLNWIL 144 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 G+ D V LD A ++ I Sbjct: 145 YGDADDLSPRAV-----LDHVAGSHEMQKI 169 >gi|262067877|ref|ZP_06027489.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] gi|291378598|gb|EFE86116.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] Length = 231 Score = 88.9 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 7/175 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDWI 90 +G IK RK N + K++A N ES+++ +EN + I + L ++ + Sbjct: 3 IGEIIKKRRKKLNLSLKDIAKKLNVSESSISRYENEEIKNMRIDKLILLSEILQVDIKEL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + D + K L I +LK++R + +S + L + +ST+ YE Sbjct: 63 LN----DINFSRKKKKATLKEIEIANKLKTLRIENNLSLKKVADFLNITSSTILKYENTD 118 Query: 151 -TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 T I K+ ++ K + +I G E I ++ + + + +K +N Sbjct: 119 ITNIPIDNINKLAEIYKVNPSYIL-GLENYDKNEIHLSEEEKELILNLRKEKENN 172 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDW 89 ++ ++K +R NN + K++A N S + +EN + + I L Y+++ + Sbjct: 81 EIANKLKTLRIENNLSLKKVADFLNITSSTILKYENTDITNIPIDNINKLAEIYKVNPSY 140 Query: 90 IYDGEVIDRRYEDVTNKKR 108 I E D+ ++ +++ Sbjct: 141 ILGLENYDKNEIHLSEEEK 159 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 1/94 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLD 170 +IG +K RK +S + K L + S++S YE I + ++ + + Sbjct: 1 MSIGEIIKKRRKKLNLSLKDIAKKLNVSESSISRYENEEIKNMRIDKLILLSEILQVDIK 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + K K + + K K + +N Sbjct: 61 ELLNDINFSRKKKKATLKEIEIANKLKTLRIENN 94 >gi|253754652|ref|YP_003027792.1| DNA-binding protein [Streptococcus suis BM407] gi|251817116|emb|CAZ54837.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 119 Score = 88.5 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + +I+ +R A N +Q E+A AV+ +ENG + I + L + +S D Sbjct: 1 MKQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSEWENGEATPDIDKLVQLAEIFGVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ G+ ++ K + K Sbjct: 61 YLVLGKEPEKEIVVEQRGKMNGWEFLNEESKR 92 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +++ +R K +SQ E + L + +S +E G P+I ++ ++ LD Sbjct: 1 MKQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSEWENGEATPDIDKLVQLAEIFGVSLD 60 Query: 171 WIYFGDEVIVPKSIKR 186 ++ G E +++ Sbjct: 61 YLVLGKEPEKEIVVEQ 76 >gi|295675501|ref|YP_003604025.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] gi|295435344|gb|ADG14514.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 157 Score = 88.5 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 4/158 (2%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + + E + ++ R +Q+E+ +A++ E + ++ A Sbjct: 1 MKKSSEPATLRERFARNLRAYRIELGMSQEELGSYIGADRTAISRLERTFGNPTLERAEA 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 L + +I + + A+GA++ ++R+ G++Q + G+L G+ Sbjct: 61 LASALDIDVRVLMTFSGKGEIERRPPTG-DVSSAAVGAKVATLREKMGLTQKQLGELAGV 119 Query: 139 PNSTLSNYE--QGRTIP-EIKPARKIKQVTKKHLDWIY 173 + +S E GR P E+ K+ + H + Sbjct: 120 DRNFISRVEAPHGRGTPLELATLEKLAEAFGIHPVELL 157 >gi|270300235|gb|ACZ69041.1| Transcriptional regulator, xre family [Staphylococcus aureus] Length = 207 Score = 88.5 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 13/108 (12%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +IK +RK+N TQ+EM A++ +EN I + + E++IS D + Sbjct: 2 NFGEQIKQLRKSNEITQQEMGARLGVSRQAISHWENNRNLPDIEMLIIISKEFDISLDIL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 G ++ + + M +G+ Sbjct: 62 ILGGNDMNN-------------MTEKIIRDGSELRKMKMKINAVKIGV 96 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 39/87 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++K +RK ++Q E G LG+ +S++E R +P+I+ I + LD Sbjct: 1 MNFGEQIKQLRKSNEITQQEMGARLGVSRQAISHWENNRNLPDIEMLIIISKEFDISLDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + G + + K + +K K Sbjct: 61 LILGGNDMNNMTEKIIRDGSELRKMKM 87 >gi|332299188|ref|YP_004441110.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332182291|gb|AEE17979.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 165 Score = 88.5 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 17/142 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I ++RKA TQ E++ N AV+ +EN + I L ++ D + Sbjct: 6 IGKKIAELRKAKGLTQDELSEQLNVSPQAVSKWENDVSYPDITLLPKLAAVLGVTVDDLL 65 Query: 92 -DGEVIDRRYEDVTNKKRLDPYAIG---ARLK--SIRKDKGMSQIEFGKLLGMPNSTLSN 145 G+ + + ++K +D +K +R + + I+ +G+ ++ Sbjct: 66 TPGKQPETKLVPQADRKNVDDMMFKVVVNSVKGDKVRVNLPVPLIKMALEMGVAVPQIAG 125 Query: 146 YEQGRTIPEIKPARKI--KQVT 165 E +KI Q+ Sbjct: 126 NE---------YLQKIDFAQIL 138 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 38/80 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +IG ++ +RK KG++Q E + L + +S +E + P+I K+ V Sbjct: 1 METISIGKKIAELRKAKGLTQDELSEQLNVSPQAVSKWENDVSYPDITLLPKLAAVLGVT 60 Query: 169 LDWIYFGDEVIVPKSIKRAK 188 +D + + K + +A Sbjct: 61 VDDLLTPGKQPETKLVPQAD 80 >gi|291523917|emb|CBK89504.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528619|emb|CBK94205.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 213 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++IK R TQ+++A ++ +EN I + + + YE S D++ Sbjct: 4 DIGSKIKAARLKKKMTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSDYYEASLDYL 63 Query: 91 YDGEVIDRRYED 102 GE Y D Sbjct: 64 LKGEQKMNTYYD 75 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 45/90 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y IG+++K+ R K M+Q + +LLG+ T+SN+E ++ P+I K+ + LD+ Sbjct: 3 YDIGSKIKAARLKKKMTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSDYYEASLDY 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G++ + + + + K Sbjct: 63 LLKGEQKMNTYYDYLEESTNVVRSNTNRNK 92 >gi|228994652|ref|ZP_04154474.1| hypothetical protein bpmyx0001_53290 [Bacillus pseudomycoides DSM 12442] gi|228765084|gb|EEM13816.1| hypothetical protein bpmyx0001_53290 [Bacillus pseudomycoides DSM 12442] Length = 188 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 44/94 (46%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++G+++K +RK +N +Q ++A N AV+ +EN C+ I + L + Y Sbjct: 13 EEESKMELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWENDKCAPDIINLVQLSDLYN 72 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +S D++ + + + + N + + Sbjct: 73 VSLDYLIKSDKELQNHLSLENNRLKVMKYFILCI 106 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G++LK +RK+ SQ + L + +S +E + P+I ++ + LD+ Sbjct: 18 MELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWENDKCAPDIINLVQLSDLYNVSLDY 77 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + D+ + + K Sbjct: 78 LIKSDKELQNHLSLENNRLKVMK 100 >gi|238916357|ref|YP_002929874.1| hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC 27750] gi|238871717|gb|ACR71427.1| Hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC 27750] Length = 217 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK R TQ+++A ++ +EN I + + Y++S D++ Sbjct: 4 DIGCKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYL 63 Query: 91 YDGEVIDRRYED 102 GE + Y D Sbjct: 64 LKGEQKMKSYYD 75 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + IG ++K+ R +K ++Q + +LLG+ T+SN+E ++ P+I K+ + LD+ Sbjct: 3 HDIGCKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDY 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G++ + + K + K Sbjct: 63 LLKGEQKMKSYYDYLEESTNVVKSNANRNK 92 >gi|146317667|ref|YP_001197379.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|145688473|gb|ABP88979.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] Length = 111 Score = 88.1 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K + +I+ +R A N +Q E+A AV+ +ENG + I + L + +S Sbjct: 2 IMKQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSL 61 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 D++ G+ ++ K + K Sbjct: 62 DYLVLGKEPEKEIVVEQRGKMNGWEFLNKESKR 94 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +++ +R K +SQ E + L + +S +E G P+I ++ ++ Sbjct: 1 MIMKQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVS 60 Query: 169 LDWIYFGDEVIVPKSIK-RAKGNQSSKKSKKDKK 201 LD++ G E ++ R K N +K+ K+ Sbjct: 61 LDYLVLGKEPEKEIVVEQRGKMNGWEFLNKESKR 94 >gi|325568103|ref|ZP_08144544.1| hypothetical protein HMPREF9087_0833 [Enterococcus casseliflavus ATCC 12755] gi|325158304|gb|EGC70455.1| hypothetical protein HMPREF9087_0833 [Enterococcus casseliflavus ATCC 12755] Length = 206 Score = 88.1 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 43/83 (51%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 L++ + T++ + + ++ + G +IK++R NN TQ++ A + AV+ +EN Sbjct: 31 LEATRVSTMLKSHQRKEKKMEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNL 90 Query: 71 TSIRYALYLRNEYEISFDWIYDG 93 + + + +++S D + G Sbjct: 91 PDLEMLIAIATIFQLSLDELILG 113 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 46/104 (44%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E +++++ G ++K +R ++Q +F L + +SN+E R +P Sbjct: 32 EATRVSTMLKSHQRKEKKMEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLP 91 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 +++ I + + LD + G + + K K ++++K Sbjct: 92 DLEMLIAIATIFQLSLDELILGGTQVNKITEKLIKDGSETRRAK 135 >gi|229000364|ref|ZP_04159924.1| hypothetical protein bmyco0003_49110 [Bacillus mycoides Rock3-17] gi|228759391|gb|EEM08377.1| hypothetical protein bmyco0003_49110 [Bacillus mycoides Rock3-17] Length = 188 Score = 87.7 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 44/94 (46%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++G+++K +RK +N +Q ++A N AV+ +EN C+ I + L + Y Sbjct: 13 EEESKMELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWENDKCAPDIINLVQLSDLYN 72 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +S D++ + + + + N + + Sbjct: 73 VSLDYLIKSDKELQNHLSLENNRLKVMKYFILCI 106 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G++LK +RK+ SQ + L + +S +E + P+I ++ + LD+ Sbjct: 18 MELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWENDKCAPDIINLVQLSDLYNVSLDY 77 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + D+ + + K Sbjct: 78 LIKSDKELQNHLSLENNRLKVMK 100 >gi|225019677|ref|ZP_03708869.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] gi|224947522|gb|EEG28731.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] Length = 261 Score = 87.7 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 2/104 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +RK +Q+ +A AV+ +E+G + I L + + ++ D + Sbjct: 2 QLNEKLQILRKEAGLSQERLAEKLGVSRQAVSKWESGQSTPDIENLSALSDLFGVTLDEL 61 Query: 91 YDGEVIDRRYEDVTNKK--RLDPYAIGARLKSIRKDKGMSQIEF 132 E + + V Y KS RK G+ + Sbjct: 62 IKKESAPQPAQAVRPAYGGTARSYRFEYEYKSKRKFLGLPLVHI 105 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L+ +RK+ G+SQ + LG+ +S +E G++ P+I+ + + LD Sbjct: 1 MQLNEKLQILRKEAGLSQERLAEKLGVSRQAVSKWESGQSTPDIENLSALSDLFGVTLDE 60 Query: 172 IYFGDEVIVPKSIKRAK--GNQSSKKSKKDKKSS 203 + + P R G S + + + KS Sbjct: 61 LIKKESAPQPAQAVRPAYGGTARSYRFEYEYKSK 94 >gi|293400092|ref|ZP_06644238.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306492|gb|EFE47735.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 247 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 42/96 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG+ I ++RKA TQK++A + V+ +E G+ SI + L N ++I+ Sbjct: 6 NEKVGSYISELRKAKKLTQKDLADKLYVSDKTVSKWERGVSMPSIPLLMPLANLFDITVT 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + GE + + I L+ RK Sbjct: 66 ELLKGEHQNIESLTKPCDIHAYDHVIYHTLQQHRKH 101 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 37/80 (46%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +++ +G+ + +RK K ++Q + L + + T+S +E+G ++P I + + Sbjct: 1 MDQINNEKVGSYISELRKAKKLTQKDLADKLYVSDKTVSKWERGVSMPSIPLLMPLANLF 60 Query: 166 KKHLDWIYFGDEVIVPKSIK 185 + + G+ + K Sbjct: 61 DITVTELLKGEHQNIESLTK 80 >gi|224541132|ref|ZP_03681671.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM 15897] gi|224525941|gb|EEF95046.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM 15897] Length = 217 Score = 87.7 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++IK R TQ+++A ++ +EN I + + Y++S D++ Sbjct: 4 DIGSKIKAARIGKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYL 63 Query: 91 YDGEVIDRRYED 102 GE + Y D Sbjct: 64 LKGEEKMKNYYD 75 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y IG+++K+ R K ++Q + +LLG+ T+SN+E ++ P+I K+ + LD+ Sbjct: 3 YDIGSKIKAARIGKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDY 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G+E + + K + K Sbjct: 63 LLKGEEKMKNYYDYLEESTNVVKSNANRNK 92 >gi|138893994|ref|YP_001124447.1| hypothetical protein GTNG_0320 [Geobacillus thermodenitrificans NG80-2] gi|196250338|ref|ZP_03149031.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134265507|gb|ABO65702.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196210227|gb|EDY04993.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 260 Score = 87.3 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 10/108 (9%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK +Q+ +A N A++ +ENG L + N +E+S D++ Sbjct: 2 NFGEKLVKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLLMIANIFEVSIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + N + D Y + + + + +S + +G+ Sbjct: 62 L-------KESAENNDDKEDGYYVS---REMAEGFLLSSKKIANHVGI 99 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I + + +D+ Sbjct: 1 MNFGEKLVKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLLMIANIFEVSIDY 60 Query: 172 IYFG 175 + Sbjct: 61 LLKE 64 >gi|210635071|ref|ZP_03298410.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279] gi|210158511|gb|EEA89482.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279] Length = 226 Score = 87.3 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RI+++R + +Q ++A ++ +ENG ++ L L + S D + Sbjct: 19 KIGGRIRELRAIHGMSQDDLAARVYVSRQTISSWENGKTYPDVQSLLLLSEIFGASVDSL 78 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 G+V + K + Sbjct: 79 IKGDVNAMNETIDRDAKTMKRLTYAMF 105 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 37/69 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +R GMSQ + + + T+S++E G+T P+++ + ++ +D + GD Sbjct: 24 IRELRAIHGMSQDDLAARVYVSRQTISSWENGKTYPDVQSLLLLSEIFGASVDSLIKGDV 83 Query: 178 VIVPKSIKR 186 + ++I R Sbjct: 84 NAMNETIDR 92 >gi|3818506|gb|AAC73053.1| putative repressor protein [Rhodococcus sp. X309] Length = 164 Score = 87.3 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 55/156 (35%), Gaps = 18/156 (11%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R T ++++ +V+ +E G + + + E ++S + Sbjct: 26 DRLRELRVKAGLTPDDLSVRLGSSRQSVSHWETGRSTPAPPVLKQIAQELDVSISVLVPI 85 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 R D +R G++QI+ + LG+ ++L+ E+G Sbjct: 86 PDNRLRMGD------------------LRVRAGLTQIQAAERLGISPTSLAEIEKGMKPV 127 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKG 189 + I ++ + E RA+ Sbjct: 128 NDQRVSAIAELYNVETAQVVEVWERGRETRETRARS 163 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +R G++ + LG ++S++E GR+ P ++I Q + + Sbjct: 23 FRADRLRELRVKAGLTPDDLSVRLGSSRQSVSHWETGRSTPAPPVLKQIAQELDVSISVL 82 Query: 173 Y 173 Sbjct: 83 V 83 >gi|331082825|ref|ZP_08331947.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400154|gb|EGG79803.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium 6_1_63FAA] Length = 91 Score = 87.3 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 37/87 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I ++RK + +Q + A N V+ +ENG + + + + ++IS D + Sbjct: 2 NIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 +V D K + D Sbjct: 62 LRNDVQSEEKIDNEKKVKRDILFYYWF 88 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 39/81 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ ++RK G+SQ +F L + T+SN+E G++ P+++ KI K +D Sbjct: 1 MNIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + D K K + Sbjct: 61 LLRNDVQSEEKIDNEKKVKRD 81 >gi|302390193|ref|YP_003826014.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302200821|gb|ADL08391.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 121 Score = 87.3 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E +++K++G RI+ IR + TQ+E+ AN S + E G S++ + Sbjct: 2 ENGEFFKNIGKRIRQIRLQRDLTQEELGERANLHYSYIGQVERGDKLPSLKTLSKIAKAL 61 Query: 84 EISFDWIYDG----EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 +S D++ + E + + ++K + E Sbjct: 62 NVSLDYVLEDPATYEAQPDTEAAINELVTMVRTRPVQQIKLLISVCRTILEEL 114 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ IR + ++Q E G+ + S + E+G +P +K KI + LD++ Sbjct: 12 KRIRQIRLQRDLTQEELGERANLHYSYIGQVERGDKLPSLKTLSKIAKALNVSLDYVLED 71 Query: 176 DEVIVPKSIKRAKGNQ 191 + A N+ Sbjct: 72 PATYEAQPDTEAAINE 87 >gi|293399884|ref|ZP_06644030.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306284|gb|EFE47527.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 168 Score = 86.9 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +K++RK TQ++ A N V+ +ENG + + + + YEI Sbjct: 3 QQKIGEFLKELRKQKGLTQEQFAEIVNVSNRTVSRWENGNNLPDLDILIEISDYYEIDLR 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + +GE + + L A K+ R +G+ Sbjct: 63 ELLNGEKKGEKMHKEVEETVLKAVAYTNN-KTERYTRGIH 101 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 40/77 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG LK +RK KG++Q +F +++ + N T+S +E G +P++ +I + Sbjct: 1 MNQQKIGEFLKELRKQKGLTQEQFAEIVNVSNRTVSRWENGNNLPDLDILIEISDYYEID 60 Query: 169 LDWIYFGDEVIVPKSIK 185 L + G++ + Sbjct: 61 LRELLNGEKKGEKMHKE 77 >gi|150021357|ref|YP_001306711.1| putative prophage repressor [Thermosipho melanesiensis BI429] gi|149793878|gb|ABR31326.1| putative prophage repressor [Thermosipho melanesiensis BI429] Length = 206 Score = 86.9 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 33/65 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R TQ+++ N + ++ +E+G + S+ L + ++++ D+ Sbjct: 2 NIGEKIKFLRLQKGLTQEQLGNIINVGQRTISAYESGKATPSVEVLKSLADYFDVAVDYF 61 Query: 91 YDGEV 95 + Sbjct: 62 LSDKP 66 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R KG++Q + G ++ + T+S YE G+ P ++ + + +D+ Sbjct: 1 MNIGEKIKFLRLQKGLTQEQLGNIINVGQRTISAYESGKATPSVEVLKSLADYFDVAVDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 K + Sbjct: 61 FLSDKPGQTEVEFVDIKFKKV 81 >gi|312870364|ref|ZP_07730489.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311094065|gb|EFQ52384.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 214 Score = 86.9 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK R N+ TQ+E+A ++ +ENG I + L + Y +S D + Sbjct: 2 EFAEKIKQYRAHNDWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYHVSLDDL 61 Query: 91 Y--DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D E+I+ ++ + + D + L Sbjct: 62 LREDHEMINNYKQEHASLAKQDRIFTISYL 91 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K R +Q E LG+ T+S++E GR+ P+I ++ + LD Sbjct: 1 MEFAEKIKQYRAHNDWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYHVSLDD 60 Query: 172 IYFGDEVIVPKSIKR 186 + D ++ + Sbjct: 61 LLREDHEMINNYKQE 75 >gi|229827500|ref|ZP_04453569.1| hypothetical protein GCWU000182_02889 [Abiotrophia defectiva ATCC 49176] gi|229788438|gb|EEP24552.1| hypothetical protein GCWU000182_02889 [Abiotrophia defectiva ATCC 49176] Length = 217 Score = 86.9 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G++IK R TQ+++A ++ +EN I L + + +++S D++ Sbjct: 2 EIGSKIKKSRTEAGFTQEQVAESLGVSRQTISNWENEKSYPDIISVLKMSDLFKVSLDYL 61 Query: 91 YDGEVIDRRYED 102 GE Y + Sbjct: 62 LKGETSMNSYVE 73 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 41/87 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+++K R + G +Q + + LG+ T+SN+E ++ P+I K+ + K LD+ Sbjct: 1 MEIGSKIKKSRTEAGFTQEQVAESLGVSRQTISNWENEKSYPDIISVLKMSDLFKVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + G+ + + K + Sbjct: 61 LLKGETSMNSYVEYLDESTNVVKSKTR 87 >gi|56419028|ref|YP_146346.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56378870|dbj|BAD74778.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 125 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 38/90 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ TQ+E+ N + +++ +ENG + L + + ++ D++ Sbjct: 7 LGDRLRKLRQEKKLTQEELGKKINVTKVSISGYENGNRTPDTETLQKLADFFNVTTDYLL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + L +G K + Sbjct: 67 GRTDHPNPPDQDDIPEELKDPELGLFFKEL 96 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y +G RL+ +R++K ++Q E GK + + ++S YE G P+ + +K+ D Sbjct: 4 FYVLGDRLRKLRQEKKLTQEELGKKINVTKVSISGYENGNRTPDTETLQKLADFFNVTTD 63 Query: 171 WIYFGDEVIVP 181 ++ + P Sbjct: 64 YLLGRTDHPNP 74 >gi|260844263|ref|YP_003222041.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|257759410|dbj|BAI30907.1| predicted transcriptional regulator [Escherichia coli O103:H2 str. 12009] Length = 230 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 5/174 (2%) Query: 11 LKSLQEYTLIITPEIRQ---YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG 67 ++ + EY L +Q + + ++ R+A T E+A + E + +E+G Sbjct: 59 MEFIHEYALSAASPAQQKQSFPESWLVNLRTQREACGLTTAELARLLDLDEEIIIQWESG 118 Query: 68 MCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 +I L N + + + N + IGAR+KS RK G+ Sbjct: 119 EYEPTISMLTPLANVLGCDPLSLLSEKNSESVIR--VNAPEVHVENIGARIKSARKKLGL 176 Query: 128 SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 ++ + +++ + ++++E G + L W+ G Sbjct: 177 TEADLARMIHTYSDPINDWECGTCEVPADQIVPLASALNCDLMWLLTGKSEAKE 230 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 4 NPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 +P S K+ + + PE+ + +++G RIK RK T+ ++A + +N Sbjct: 137 DPLSLLSEKNSESVIRVNAPEV--HVENIGARIKSARKKLGLTEADLARMIHTYSDPIND 194 Query: 64 FENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 +E G C + L + W+ G+ Sbjct: 195 WECGTCEVPADQIVPLASALNCDLMWLLTGKSE 227 >gi|309776169|ref|ZP_07671160.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308916120|gb|EFP61869.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 173 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 11/165 (6%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 E + +G R+K +R+ T KEMA A E G ++SI + Sbjct: 4 CRYENDTILQAIGDRLKILREERGLTFKEMAKEACIDRDNYMRVERGERNSSIGIFCNIA 63 Query: 81 NEYEISF------DWIYDGEVIDRRY-----EDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 I D+I + + D K + + + LK R KG+SQ Sbjct: 64 IGLNIHVSEIFNEDYIICLKKYEDIQYIRKIMDTDEYKLISKKKVISMLKKYRIKKGISQ 123 Query: 130 IEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LG+ + ++N E GR + + + ++ ++ + Sbjct: 124 NVLAIELGVSRNMINNLEYGRGRIKEELLIGMLKIFDLSVEELLK 168 Score = 38.4 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG RLK +R+++G++ E K + E+G I I H+ I Sbjct: 14 AIGDRLKILREERGLTFKEMAKEACIDRDNYMRVERGERNSSIGIFCNIAIGLNIHVSEI 73 Query: 173 YFGD 176 + D Sbjct: 74 FNED 77 >gi|154499775|ref|ZP_02037813.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC 29799] gi|150271373|gb|EDM98630.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC 29799] Length = 267 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +RK +Q+ +A ++ +E G + + L + + +S D++ Sbjct: 3 LGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFNVSSDYLI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E+ + + + Sbjct: 63 KDEMTEPDELPYKKRNYRLSERSKRII 89 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 45/87 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ +RK +G+SQ + + + T+S +E G+++P++ ++ + D+ Sbjct: 1 MTLGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFNVSSDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + + + + + S++SK+ Sbjct: 61 LIKDEMTEPDELPYKKRNYRLSERSKR 87 >gi|259502238|ref|ZP_05745140.1| transcription regulator [Lactobacillus antri DSM 16041] gi|259169856|gb|EEW54351.1| transcription regulator [Lactobacillus antri DSM 16041] Length = 212 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK R NN TQ+E+A ++ +ENG I + L + Y+IS D + Sbjct: 2 EFAEKIKQYRAHNNWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYQISLDDL 61 Query: 91 Y--DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D E+I+ ++ + + D + L Sbjct: 62 LREDHEMINNYKQEHASLAKQDRIFTISYL 91 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 33/75 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K R +Q E LG+ T+S++E GR+ P+I ++ + + LD Sbjct: 1 MEFAEKIKQYRAHNNWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYQISLDD 60 Query: 172 IYFGDEVIVPKSIKR 186 + D ++ + Sbjct: 61 LLREDHEMINNYKQE 75 >gi|257868230|ref|ZP_05647883.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874497|ref|ZP_05654150.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257802344|gb|EEV31216.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808661|gb|EEV37483.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 176 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 42/83 (50%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 ++ + T++ + + ++ + G +IK++R NN TQ++ A + AV+ +EN Sbjct: 1 MEPTRGSTMLKSHQRKEEKMEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNL 60 Query: 71 TSIRYALYLRNEYEISFDWIYDG 93 + + + +++S D + G Sbjct: 61 PDLEMLIAIATIFQLSLDELILG 83 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 47/104 (45%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E +++++ + G ++K +R ++Q +F L + +SN+E R +P Sbjct: 2 EPTRGSTMLKSHQRKEEKMEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLP 61 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 +++ I + + LD + G + + K K ++++K Sbjct: 62 DLEMLIAIATIFQLSLDELILGGTQVNKITEKLIKDGSETRRAK 105 >gi|331702633|ref|YP_004399592.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129976|gb|AEB74529.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 110 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ R+ TQ +A + A++ +E G I + L + + +S D + Sbjct: 3 LGQRIKEEREKLGWTQDRLAEELHVSRQAISKWEVGSAYPDIERLIQLSDLFGVSLDSLI 62 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGAR 117 G E + ++ +N +++ + Sbjct: 63 KGDERLQKKIVIGSNHDQMNFWGFMNY 89 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+K R+ G +Q + L + +S +E G P+I+ ++ + LD Sbjct: 1 MVLGQRIKEEREKLGWTQDRLAEELHVSRQAISKWEVGSAYPDIERLIQLSDLFGVSLDS 60 Query: 172 IYFGDEVIVPKSI 184 + GDE + K + Sbjct: 61 LIKGDERLQKKIV 73 >gi|210623799|ref|ZP_03294059.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM 13275] gi|210153381|gb|EEA84387.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM 13275] Length = 359 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 43/87 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK N +Q+E+A + +V+ +E+G ++ + + +E+S D++ Sbjct: 3 LSEKIMNLRKKNGWSQEELAERLDISRQSVSKWESGESVPTLEKLIRISEIFEVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + +++ + ++ + + Sbjct: 63 KDDFKEEKFDRNKSSIYMNKIEESSYI 89 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ ++RK G SQ E + L + ++S +E G ++P ++ +I ++ + D+ Sbjct: 1 MTLSEKIMNLRKKNGWSQEELAERLDISRQSVSKWESGESVPTLEKLIRISEIFEVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + D K K + S +K ++ S Sbjct: 61 LLKDDF----KEEKFDRNKSSIYMNKIEESS 87 >gi|332653833|ref|ZP_08419577.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332516919|gb|EGJ46524.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 252 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 38/107 (35%), Gaps = 15/107 (14%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I +R +Q+++A +V+ +E G + + L + + ++ D + Sbjct: 39 LGEKICTLRTGKGLSQEDLAAKLEVSRQSVSKWETGQSVPDLEKIIKLADLFGVNVDELV 98 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + + T +K R+ + +G+ Sbjct: 99 REGERPQPPKPETKVV---------YVKEKREW------TAAQKVGI 130 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 38/81 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ ++R KG+SQ + L + ++S +E G+++P+++ K+ + ++D + Sbjct: 41 EKICTLRTGKGLSQEDLAAKLEVSRQSVSKWETGQSVPDLEKIIKLADLFGVNVDELVRE 100 Query: 176 DEVIVPKSIKRAKGNQSSKKS 196 E P + K+ Sbjct: 101 GERPQPPKPETKVVYVKEKRE 121 >gi|325840878|ref|ZP_08167213.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490135|gb|EGC92473.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 330 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +GT+I +RK +Q+E+A A++ +E GM + + L +E D + Sbjct: 5 QLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDLDGL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + N K + + Sbjct: 65 MGIKSDIKEEPVELNLKPMKWMYLTQ 90 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 43/77 (55%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + +G ++ ++RK +GMSQ E LG+ +SN+E+G T P+++ K+ + + Sbjct: 1 MEHHQLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETD 60 Query: 169 LDWIYFGDEVIVPKSIK 185 LD + I + ++ Sbjct: 61 LDGLMGIKSDIKEEPVE 77 >gi|291459407|ref|ZP_06598797.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418006|gb|EFE91725.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 173 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +K++R+ TQ+++A N V+ +E G + + + + YEI Sbjct: 3 QQKIGALLKELRRQRAVTQEQLAEMLNVSRRTVSRWETGSNMPDLDILIEIADYYEIDIR 62 Query: 89 WIYDGEVID--RRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + DGE E ++ Y+ +LK +R+ G Sbjct: 63 ELLDGERRSGQMEEEMKETVWKMLDYSNEKKLKYMRRLHGCY 104 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 41/93 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IGA LK +R+ + ++Q + ++L + T+S +E G +P++ +I + Sbjct: 1 MDQQKIGALLKELRRQRAVTQEQLAEMLNVSRRTVSRWETGSNMPDLDILIEIADYYEID 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + G+ + + +KK Sbjct: 61 IRELLDGERRSGQMEEEMKETVWKMLDYSNEKK 93 >gi|325678189|ref|ZP_08157818.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110081|gb|EGC04268.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 195 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 6/151 (3%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNE 82 +I++ + R+ + + + E+ +S++ + G I L Sbjct: 2 KIKETQELRAQRLNAAIEKSGLSYPELEKLTGISKSSLQRYATGATKKIPIDCLEKLAKA 61 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + ++ GE V K D RLK +R+ +G++ + L +P +T Sbjct: 62 LNLDPAYLVFGEDSSPFNMVVGGNKMFD-----NRLKQLREARGLTMRQAAADLDIPYTT 116 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +YE+ K+ D++ Sbjct: 117 YVHYEKDENEANSTALVKMALYYGVSTDYLL 147 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 29/75 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+A T ++ A + + +E + + + Y +S D++ Sbjct: 90 NRLKQLREARGLTMRQAAADLDIPYTTYVHYEKDENEANSTALVKMALYYGVSTDYLLGL 149 Query: 94 EVIDRRYEDVTNKKR 108 + + +++ Sbjct: 150 PTKTEKDSPLNSERE 164 Score = 38.4 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLDWIYF 174 RL + + G+S E KL G+ S+L Y G T I K+ + ++ F Sbjct: 12 QRLNAAIEKSGLSYPELEKLTGISKSSLQRYATGATKKIPIDCLEKLAKALNLDPAYLVF 71 Query: 175 GDEV 178 G++ Sbjct: 72 GEDS 75 >gi|115378362|ref|ZP_01465526.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|310818241|ref|YP_003950599.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115364638|gb|EAU63709.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309391313|gb|ADO68772.1| Transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 168 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 7/152 (4%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G I+ R TQ++MA N E G + + + + + Sbjct: 6 RRTLGRNIRQARHRLGLTQEQMAERINMTPEVYGRMERGNLVPRLERFVVICRVLGETPN 65 Query: 89 WIYD-------GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 + E + +GA ++ RK G++Q+E + + MP Sbjct: 66 RLISSREPATADEETSEAPDPAEVPIEDLQRRLGANMREARKRLGLTQVEMAERIRMPVD 125 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 E+G T+P + I QV + D + Sbjct: 126 LYGRMERGETLPRLDRFVTICQVLGEMSDQLL 157 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 LD +G ++ R G++Q + + + M E+G +P ++ I +V Sbjct: 1 MDSLDRRTLGRNIRQARHRLGLTQEQMAERINMTPEVYGRMERGNLVPRLERFVVICRVL 60 Query: 166 KKHLDWIYFGDEV 178 + + + E Sbjct: 61 GETPNRLISSREP 73 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 21/67 (31%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I + +G +++ RK TQ EMA E G + + + Sbjct: 91 IEDLQRRLGANMREARKRLGLTQVEMAERIRMPVDLYGRMERGETLPRLDRFVTICQVLG 150 Query: 85 ISFDWIY 91 D + Sbjct: 151 EMSDQLL 157 >gi|227545281|ref|ZP_03975330.1| possible transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908647|ref|ZP_07126110.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227184750|gb|EEI64821.1| possible transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894054|gb|EFK87412.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 161 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 6/97 (6%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + + + ++K +R +Q+++A + AV+ +E G + A+ L Sbjct: 10 YDRSKLTMEFAKQLKKLRTDKGLSQEDIAQKIHVTRQAVSRWEAGSSVPDLETAVQLAAF 69 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 +++S DW+ + + N D L+ Sbjct: 70 FDVSLDWLVLNKQLA------DNITNQDILNAVNELR 100 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK +R DKG+SQ + + + + +S +E G ++P+++ A ++ LDW Sbjct: 17 MEFAKQLKKLRTDKGLSQEDIAQKIHVTRQAVSRWEAGSSVPDLETAVQLAAFFDVSLDW 76 Query: 172 IYFGDE 177 + + Sbjct: 77 LVLNKQ 82 >gi|260587052|ref|ZP_05852965.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542542|gb|EEX23111.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 215 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 11/147 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I ++RK + +Q + A N V+ +ENG + + + + ++IS D + Sbjct: 2 NIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD-----KGMSQIEFGKLLGMPNSTLSN 145 +V D K + + L + G Q N T+ Sbjct: 62 LRNDVQSEEKIDNEKKVKKRYLILLLVLCFLGAMIIWGLYGKYQDSVA-----VNFTMEK 116 Query: 146 YEQGRTIPEIKPARKIKQ-VTKKHLDW 171 +E + + + I D Sbjct: 117 HETYKNNETKEQSINIANGYFSVPKDE 143 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 39/80 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ ++RK G+SQ +F L + T+SN+E G++ P+++ KI K +D Sbjct: 1 MNIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D K K + Sbjct: 61 LLRNDVQSEEKIDNEKKVKK 80 >gi|325970118|ref|YP_004246309.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025356|gb|ADY12115.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 207 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 16/184 (8%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 M ++P +TS KS + KDVG I+ +RK+ + ++ Sbjct: 1 MNIDPEAKTSEKSHTDI----------LEKDVGKAIRILRKSYQLSISAFSMKTGYSRVH 50 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDP------YAI 114 ++ E+G + +RN + + W + E + + + + A+ Sbjct: 51 ISEVESGKRKATDELVSIIRNVFHLDSSWPFSEEQPGDPDGNKLHHEFSEQEELSSIEAV 110 Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL ++RK+ ++Q +F KL G+ + + + GR ++ A++I+ +W+ Sbjct: 111 AERLIALRKELHINQKDFAKLTGISVAIIEDVVYGRRKLTLRRAQRIEDACGIGTEWLLH 170 Query: 175 GDEV 178 GDE Sbjct: 171 GDED 174 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + V R+ +RK + QK+ A + + G ++R A + + Sbjct: 102 EELSSIEAVAERLIALRKELHINQKDFAKLTGISVAIIEDVVYGRRKLTLRRAQRIEDAC 161 Query: 84 EISFDWIYDGEVIDRRYE 101 I +W+ G+ + + Sbjct: 162 GIGTEWLLHGDEDAKYHP 179 >gi|229829934|ref|ZP_04456003.1| hypothetical protein GCWU000342_02040 [Shuttleworthia satelles DSM 14600] gi|229791232|gb|EEP27346.1| hypothetical protein GCWU000342_02040 [Shuttleworthia satelles DSM 14600] Length = 211 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++I+ R TQ++ A ++ +EN I L + + Y +S D++ Sbjct: 2 DIGSKIRKSRVDAKLTQEQAAEALGISRQTISNWENEKSYPDIVSVLKMSDLYRVSLDYL 61 Query: 91 YDGEVIDRRYED 102 GE Y D Sbjct: 62 LKGESSMSSYMD 73 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 42/87 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG++++ R D ++Q + + LG+ T+SN+E ++ P+I K+ + + LD+ Sbjct: 1 MDIGSKIRKSRVDAKLTQEQAAEALGISRQTISNWENEKSYPDIVSVLKMSDLYRVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + G+ + + K ++ Sbjct: 61 LLKGESSMSSYMDYLDESTNQVKSRRR 87 >gi|319934812|ref|ZP_08009257.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319810189|gb|EFW06551.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 302 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G +++ +RK +Q+ +A + AV+ +E+G + + + + + ++ D++ Sbjct: 2 DFGMKLQSLRKEKGLSQEALAEKLHVSRQAVSKWESGAGYPEMDKLILISDLFGVTIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + K + ++K K Sbjct: 62 IKDSHESVPDDQRAESK---YFMNSQKIKEYMNFKRHF 96 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L+S+RK+KG+SQ + L + +S +E G PE+ I + +D+ Sbjct: 1 MDFGMKLQSLRKEKGLSQEALAEKLHVSRQAVSKWESGAGYPEMDKLILISDLFGVTIDY 60 Query: 172 IYFGDEVIVPKSIK-RAKGNQSSKKSKK 198 + VP + +K +S+K K+ Sbjct: 61 LIKDSHESVPDDQRAESKYFMNSQKIKE 88 >gi|58338178|ref|YP_194763.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM] gi|227902636|ref|ZP_04020441.1| XRE family transcriptional regulator [Lactobacillus acidophilus ATCC 4796] gi|58255495|gb|AAV43732.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM] gi|227869542|gb|EEJ76963.1| XRE family transcriptional regulator [Lactobacillus acidophilus ATCC 4796] Length = 174 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 I + +I +R NN +Q+E+A N +V+ +E+G + + L + Sbjct: 35 KTIEVIRMSLNQKIAQLRNDNNWSQEELAEKLNVSRQSVSKWESGQAKPDLDKIIALSDI 94 Query: 83 YEISFDWIYDGEVIDRRYEDVTNK 106 +++S D++ + ++ Sbjct: 95 FDVSTDYLLKDDNEEKSNPSTNKH 118 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 35/98 (35%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + + Y D + ++ ++ +R D SQ E + L + ++S +E G Sbjct: 20 LVECNHFSQYYFDKIKTIEVIRMSLNQKIAQLRNDNNWSQEELAEKLNVSRQSVSKWESG 79 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 + P++ + + D++ D Sbjct: 80 QAKPDLDKIIALSDIFDVSTDYLLKDDNEEKSNPSTNK 117 >gi|313900820|ref|ZP_07834310.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312954240|gb|EFR35918.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 162 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 5/115 (4%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +GT+I ++RKA TQ E+A AV+ +EN + + + L + + IS D Sbjct: 1 MKALGTKISELRKARGMTQDELADKMGVSPQAVSKWENDLSMPDLPVLIELSDFFHISLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL-----KSIRKDKGMSQIEFGKLLGM 138 +V +K ++ + + +R + ++ ++ + +G+ Sbjct: 61 DFLKEKVQTVELLPEDKRKDIEQMFLRVYVDSENGDRVRVNLPLALVKMARDMGL 115 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A+G ++ +RK +GM+Q E +G+ +S +E ++P++ ++ LD Sbjct: 1 MKALGTKISELRKARGMTQDELADKMGVSPQAVSKWENDLSMPDLPVLIELSDFFHISLD 60 Query: 171 WIYFGDEVIVPKSIKRAK 188 V + + Sbjct: 61 DFLKEKVQTVELLPEDKR 78 >gi|210634400|ref|ZP_03298102.1| hypothetical protein COLSTE_02024 [Collinsella stercoris DSM 13279] gi|210158825|gb|EEA89796.1| hypothetical protein COLSTE_02024 [Collinsella stercoris DSM 13279] Length = 206 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK+ RK +Q ++A ++ +E G ++ L L N + ++ D + Sbjct: 2 ELGAHIKEHRKELGLSQDDLAAKIYVSRQTISNWEVGRTYPDVQSLLLLSNVFGVTVDSL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G+V K+ Sbjct: 62 IKGDVETMAQVMDAAVKK 79 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 39/76 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GA +K RK+ G+SQ + + + T+SN+E GRT P+++ + V +D Sbjct: 1 MELGAHIKEHRKELGLSQDDLAAKIYVSRQTISNWEVGRTYPDVQSLLLLSNVFGVTVDS 60 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + + + A Sbjct: 61 LIKGDVETMAQVMDAA 76 >gi|171778203|ref|ZP_02919432.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283027|gb|EDT48451.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 184 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+ ++RK N +Q+E+A ++ +E G I L + N +++S D + Sbjct: 2 ELERRLAELRKEKNVSQEEIAEKLYVSRQTISKWERGKTYPDINSLLLMANYFDVSLDHL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G+V +++ ++ Sbjct: 62 IKGDVDTMKHQVDQSQ 77 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL +RK+K +SQ E + L + T+S +E+G+T P+I + LD Sbjct: 1 MELERRLAELRKEKNVSQEEIAEKLYVSRQTISKWERGKTYPDINSLLLMANYFDVSLDH 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + GD + + +++ Sbjct: 61 LIKGDVDTMKHQVDQSQ 77 >gi|310828555|ref|YP_003960912.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] gi|308740289|gb|ADO37949.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] Length = 268 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 42/99 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +RK +Q+ +A AV+ +E+G+ + I ++L +E+S D + G Sbjct: 5 ERLFQLRKQKGFSQETLAERMGVSRQAVSKWESGLSNPDINNLVFLSEIFEVSLDELIKG 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 E ++ T K P + KS G+ + Sbjct: 65 EAPQASEKEETIKIVEVPCSRHYEYKSRHHIGGIPLVHI 103 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL +RK KG SQ + +G+ +S +E G + P+I + ++ + LD Sbjct: 1 MTFQERLFQLRKQKGFSQETLAERMGVSRQAVSKWESGLSNPDINNLVFLSEIFEVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + G+ + + K + + KS + Sbjct: 61 LIKGEAPQASEKEETIKIVEVPCSRHYEYKSRH 93 >gi|238021090|ref|ZP_04601516.1| hypothetical protein GCWU000324_00988 [Kingella oralis ATCC 51147] gi|237868070|gb|EEP69076.1| hypothetical protein GCWU000324_00988 [Kingella oralis ATCC 51147] Length = 351 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 4/148 (2%) Query: 41 KANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI---YDGEVID 97 K TQ +A + + AVN++ NG+ + A + E+ Sbjct: 46 KELGLTQAILAEKLDVSQGAVNMYLNGINPLNTPIASRFAELLNVPVSDFSPRLAAEIGR 105 Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + ++ + RL R+ KG+SQ + GK + S ++ E GR Sbjct: 106 MAQTIASTTMQVSHSTLKDRLIYAREQKGISQEQLGKAINKSQSAIAALETGRNQGSTNI 165 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 A KI +V W+ G + P+S Sbjct: 166 A-KIAEVLGVSAIWLETGQGEMYPQSTT 192 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I + ++ + R+ R+ +Q+++ N+ +SA+ E G S A + Sbjct: 110 IASTTMQVSHSTLKDRLIYAREQKGISQEQLGKAINKSQSAIAALETGRNQGSTNIA-KI 168 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 +S W+ G+ + Sbjct: 169 AEVLGVSAIWLETGQGEMYPQSTTPRINEITDIHRP 204 >gi|312134838|ref|YP_004002176.1| XRE family transcriptional regulator [Caldicellulosiruptor owensensis OL] gi|311774889|gb|ADQ04376.1| transcriptional regulator, XRE family [Caldicellulosiruptor owensensis OL] Length = 230 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K G RI+++R+ QK++A N A++ +E G S+ + + +S D+ Sbjct: 12 KLFGLRIRELREKQGLQQKDVAKKLNISNQALSNYELGKRMPSLEMVKKFADFFNVSTDY 71 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + +D K+ Sbjct: 72 LMGLTNSPNPNQDDDVVKKF 91 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R+ +G+ Q + K L + N LSNYE G+ +P ++ +K D++ Sbjct: 18 IRELREKQGLQQKDVAKKLNISNQALSNYELGKRMPSLEMVKKFADFFNVSTDYLM 73 >gi|78043201|ref|YP_360517.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995316|gb|ABB14215.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus hydrogenoformans Z-2901] Length = 254 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G R++ +R + TQ E+A + ES ++ +E+ + L N + +S D++ Sbjct: 2 NFGQRLRQLRTERDLTQAELAKLLSIGESTISFYESNKRQPDFDTLIKLSNFFNVSIDFL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 ++ T L Sbjct: 62 LGRTDESNKFIQNTKTIPL 80 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RL+ +R ++ ++Q E KLL + ST+S YE + P+ K+ +D+ Sbjct: 1 MNFGQRLRQLRTERDLTQAELAKLLSIGESTISFYESNKRQPDFDTLIKLSNFFNVSIDF 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + G K I+ K Sbjct: 61 LL-GRTDESNKFIQNTK 76 >gi|163790412|ref|ZP_02184843.1| putative transcriptional regulator [Carnobacterium sp. AT7] gi|159874316|gb|EDP68389.1| putative transcriptional regulator [Carnobacterium sp. AT7] Length = 170 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K R +Q +A N +++ +ENG + + L N YE+S D + Sbjct: 2 ELGERLKQSRTNKGFSQTNVADHLNISRQSISKWENGNSLPDLANLVKLSNYYEVSIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + + + D ++ Sbjct: 62 LKENKQLKNKIEANELEIEDKSQKLNFIR 90 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G RLK R +KG SQ L + ++S +E G ++P++ K+ + +D Sbjct: 1 MELGERLKQSRTNKGFSQTNVADHLNISRQSISKWENGNSLPDLANLVKLSNYYEVSIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + ++ + K A + KS+K Sbjct: 61 LLKENKQLKNKI--EANELEIEDKSQK 85 >gi|257865636|ref|ZP_05645289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257871972|ref|ZP_05651625.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257799570|gb|EEV28622.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257806136|gb|EEV34958.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 204 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK+ R TQ+E++ ++ +EN + I + L + Y+I + + Sbjct: 3 IAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLESLL 62 Query: 92 DGEVIDRRYEDVTNKKR 108 E E ++++K+ Sbjct: 63 KPEQAADEPERMSDEKK 79 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R G++Q E + L + T+SN+E R+ P+I K+ + + L+ Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLES 60 Query: 172 IYFGDEVI-VPKSIKRAK 188 + ++ P+ + K Sbjct: 61 LLKPEQAADEPERMSDEK 78 >gi|268608518|ref|ZP_06142245.1| DNA-binding protein [Ruminococcus flavefaciens FD-1] Length = 190 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 11/153 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG +IK R N +Q+ +A A V+ +EN I + L N + IS D + Sbjct: 2 EVGNQIKKHRTKNGWSQEVLAEKAFVSRQTVSNWENNKSYPDIHSLVLLGNIFNISLDEL 61 Query: 91 YDGEVIDRRYEDVTNK--KRLDPYAIGARLKSIRKDKGMSQIEF--------GKLLGMPN 140 G+V + E N+ + + L I + ++ + Sbjct: 62 IKGDVEVMKNEINKNEVKEFNTWAWVMTGLMLIMIISPVPLFSAGPIGIVIWAAIVAVTL 121 Query: 141 STLSNYEQGRTIPEIKPARKIKQVT-KKHLDWI 172 + E+ + I+ ++I K LD I Sbjct: 122 AVCVKVEKLKKSYNIQTYKEISAFMDGKPLDEI 154 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K R G SQ + + T+SN+E ++ P+I + + LD Sbjct: 1 MEVGNQIKKHRTKNGWSQEVLAEKAFVSRQTVSNWENNKSYPDIHSLVLLGNIFNISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + GD ++ I + + + Sbjct: 61 LIKGDVEVMKNEINKNEVKE 80 >gi|146319128|ref|YP_001198840.1| hypothetical protein SSU05_1474 [Streptococcus suis 05ZYH33] gi|146321334|ref|YP_001201045.1| hypothetical protein SSU98_1487 [Streptococcus suis 98HAH33] gi|145689934|gb|ABP90440.1| hypothetical protein SSU05_1474 [Streptococcus suis 05ZYH33] gi|145692140|gb|ABP92645.1| hypothetical protein SSU98_1487 [Streptococcus suis 98HAH33] gi|292558766|gb|ADE31767.1| hypothetical protein SSGZ1_1311 [Streptococcus suis GZ1] Length = 178 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 38/94 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + G +IKD+RK TQ++ A+ N AV+ +EN + + + + + Sbjct: 16 RKEKEMNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFS 75 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 IS D + G + K + L Sbjct: 76 ISLDQLILGGTDMNNMTEKLVKDGREGRRTQMHL 109 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 44/95 (46%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 ++ G ++K +RK KG++Q +F L + +SN+E + +P+++ + Sbjct: 13 PAPRKEKEMNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSS 72 Query: 164 VTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 V LD + G + + K K + ++++ Sbjct: 73 VFSISLDQLILGGTDMNNMTEKLVKDGREGRRTQM 107 >gi|255280221|ref|ZP_05344776.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255269312|gb|EET62517.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 330 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I D+RK N +Q+E+A +V+ +E G + L L + ++ D++ Sbjct: 3 LAEKIMDLRKKNGWSQEELAQQLRVSRQSVSKWEGGQSVPDLDKLLALSQIFGVTLDYLV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPY 112 E+ + D Sbjct: 63 KDEISSEEVQYTATDIPEDDL 83 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ +RK G SQ E + L + ++S +E G+++P++ + Q+ LD+ Sbjct: 1 MILAEKIMDLRKKNGWSQEELAQQLRVSRQSVSKWEGGQSVPDLDKLLALSQIFGVTLDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + DE+ + A Sbjct: 61 LVK-DEISSEEVQYTA 75 >gi|226325758|ref|ZP_03801276.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758] gi|225205882|gb|EEG88236.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758] Length = 319 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 1/96 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +K +RK TQ+++A ++ +E G + + + Y + Sbjct: 4 KKIGEFLKVLRKERGLTQEQLAEILLVSGRTISRWETGTNMPDLSILIKMAEFYNVEVKE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I DGE D K+ L A +L+ R K Sbjct: 64 ILDGE-RKSESMDKELKETLSKVADYNKLEKERVTK 98 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 7/95 (7%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG LK +RK++G++Q + ++L + T+S +E G +P++ K+ + Sbjct: 1 MDTKKIGEFLKVLRKERGLTQEQLAEILLVSGRTISRWETGTNMPDLSILIKMAEFYNVE 60 Query: 169 LDWIYFG-------DEVIVPKSIKRAKGNQSSKKS 196 + I G D+ + K A N+ K+ Sbjct: 61 VKEILDGERKSESMDKELKETLSKVADYNKLEKER 95 >gi|229827219|ref|ZP_04453288.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC 49176] gi|229788837|gb|EEP24951.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC 49176] Length = 202 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+++RKA +Q+E+A + AV+ +ENG + + L +E++ D+I Sbjct: 2 NISERIQELRKAKGISQEELADKIDVSRQAVSKWENGQSIPDLEKVILLSEYFEVTTDYI 61 Query: 91 YDG 93 G Sbjct: 62 LKG 64 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 37/75 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R++ +RK KG+SQ E + + +S +E G++IP+++ + + + D+ Sbjct: 1 MNISERIQELRKAKGISQEELADKIDVSRQAVSKWENGQSIPDLEKVILLSEYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKR 186 I G E + + Sbjct: 61 ILKGIEPVKKNGTDK 75 >gi|229815069|ref|ZP_04445406.1| hypothetical protein COLINT_02111 [Collinsella intestinalis DSM 13280] gi|229809299|gb|EEP45064.1| hypothetical protein COLINT_02111 [Collinsella intestinalis DSM 13280] Length = 206 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ IK+ R +Q ++A ++ +E G ++ L L N + ++ D + Sbjct: 2 ELGSHIKEHRTELGLSQDDLAERIYVSRQTISNWECGRTYPDVQSLLLLSNVFGVTVDSL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G+V K+ Sbjct: 62 IKGDVETMAQVMNEAVKK 79 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 39/76 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G+ +K R + G+SQ + + + + T+SN+E GRT P+++ + V +D Sbjct: 1 MELGSHIKEHRTELGLSQDDLAERIYVSRQTISNWECGRTYPDVQSLLLLSNVFGVTVDS 60 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + + + A Sbjct: 61 LIKGDVETMAQVMNEA 76 >gi|317501992|ref|ZP_07960176.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896672|gb|EFV18759.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium 8_1_57FAA] Length = 102 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 41/97 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I ++RK + +Q + A N ++ +ENG + + + + ++IS D + Sbjct: 2 NIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 +V + D K + + A R + Sbjct: 62 LKNDVQTVKKIDNEKKDKKEVSYTIASFMFFRNCYYL 98 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 40/81 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ ++RK G+SQ +F L + T+SN+E G++ P+++ K+ K +D Sbjct: 1 MNIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + D V K K + Sbjct: 61 LLKNDVQTVKKIDNEKKDKKE 81 >gi|332653080|ref|ZP_08418825.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518226|gb|EGJ47829.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 208 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 35/96 (36%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E +G ++ +RK +Q+++A ++ +E + L + Y Sbjct: 12 EAEVIDMTLGENLQRLRKEKGLSQEDVARALFVSRQTISKWETDKAEPGVDNLKALADLY 71 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 E++ D + ++ + D Y A ++ Sbjct: 72 EVTLDQLTGRARTGTDSKESHEQTPSDQYRTMALIR 107 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G L+ +RK+KG+SQ + + L + T+S +E + P + + + + + LD Sbjct: 18 MTLGENLQRLRKEKGLSQEDVARALFVSRQTISKWETDKAEPGVDNLKALADLYEVTLDQ 77 Query: 172 I 172 + Sbjct: 78 L 78 >gi|302875363|ref|YP_003843996.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307688943|ref|ZP_07631389.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578220|gb|ADL52232.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 226 Score = 85.4 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 3/114 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RK TQ+E A AV +E G + + + N Y++S D + Sbjct: 5 QKLQALRKEKGLTQEEFAETIGVSRQAVAKWEAGQSYPDLDRLIEISNLYKVSIDKLVKD 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + + K YA + + K K ++ G + E Sbjct: 65 CKENCSFNEEKTYKD---YADNEMICFLCKAKKVTYAGSGSETVSSRPNSHDLE 115 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 38/64 (59%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ +L+++RK+KG++Q EF + +G+ ++ +E G++ P++ +I + K +D Sbjct: 1 MSLQQKLQALRKEKGLTQEEFAETIGVSRQAVAKWEAGQSYPDLDRLIEISNLYKVSIDK 60 Query: 172 IYFG 175 + Sbjct: 61 LVKD 64 >gi|261409127|ref|YP_003245368.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329923481|ref|ZP_08278961.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|261285590|gb|ACX67561.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] gi|328941241|gb|EGG37537.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 122 Score = 85.4 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 36/80 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G RI ++R+ TQ+E+A +A++ +E L + +++S D++ Sbjct: 2 NYGERIAELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 +++ D + +D Sbjct: 62 IGRTTLEKSVLDPEVRSFVD 81 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+ +R+ +G +Q E +G+ + LS+YE+ R P+ + ++ + +D+ Sbjct: 1 MNYGERIAELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDY 60 Query: 172 IY 173 + Sbjct: 61 LI 62 >gi|257064295|ref|YP_003143967.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791948|gb|ACV22618.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 196 Score = 85.4 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 38/86 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RI++ R N +Q+ +A V+ +E G ++ L + N + +S D + Sbjct: 2 EVGNRIREERDRANLSQEGLAEKIFVSRQTVSNWETGKTYPDVQSLLLMSNLFGVSIDSL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 G+++ E + R+ A Sbjct: 62 VKGDIVAMNEELDRSASRMKTLAGSM 87 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 39/82 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ R +SQ + + + T+SN+E G+T P+++ + + +D Sbjct: 1 MEVGNRIREERDRANLSQEGLAEKIFVSRQTVSNWETGKTYPDVQSLLLMSNLFGVSIDS 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + GD V + + + R+ + Sbjct: 61 LVKGDIVAMNEELDRSASRMKT 82 >gi|297528604|ref|YP_003669879.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297251856|gb|ADI25302.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 148 Score = 85.4 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +RKA TQ+E+ N + +++ +E+G + + L + ++S D++ Sbjct: 5 QRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDYLLGR 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + + D I L+ I K F G+ L ++ I Sbjct: 65 DNTQPTDTKLPALTEKDERDIQKELEKIIKGLKTG-SGFAAFGGVDIDELDEEDRELLIA 123 Query: 154 EIKPARKIKQ 163 ++ + ++ + Sbjct: 124 SLENSLRLAK 133 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 41/91 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL+ +RK KG++Q E G+ + + ++S YE G P++ + + +D+ Sbjct: 1 MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + D + A + + +K+ + Sbjct: 61 LLGRDNTQPTDTKLPALTEKDERDIQKELEK 91 >gi|257438062|ref|ZP_05613817.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii A2-165] gi|257199393|gb|EEU97677.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii A2-165] Length = 208 Score = 85.0 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++++RK+ TQ+E+A +A++ +E+G SI + + +S D + Sbjct: 5 EFHEKLQELRKSRGLTQEELAEALFVSRTAISKWESGRGYPSIDSLKEISRYFSVSIDEL 64 Query: 91 YDGEVIDRRYEDVTNKK 107 G+ + E Sbjct: 65 LSGDQLVLIAEKENKSN 81 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +L+ +RK +G++Q E + L + + +S +E GR P I ++I + Sbjct: 1 MKEVEFHEKLQELRKSRGLTQEELAEALFVSRTAISKWESGRGYPSIDSLKEISRYFSVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 +D + GD++++ + K K N Sbjct: 61 IDELLSGDQLVL-IAEKENKSN 81 >gi|217966210|ref|YP_002351888.1| gp33 [Listeria monocytogenes HCC23] gi|217335480|gb|ACK41274.1| gp33 [Listeria monocytogenes HCC23] gi|307572181|emb|CAR85360.1| HTH-type transcriptional regulator, putative [Listeria monocytogenes L99] Length = 158 Score = 85.0 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K +RK NNKTQ++++ A + ENG + + L N + +S D++ Sbjct: 2 FGNRLKQLRKNNNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFGVSTDYLL 61 Query: 92 ----DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 +G + +N + I A ++ RK Sbjct: 62 GRSNNGFIDTIAAHIDSNATEEEMEEILAYIEEKRKKY 99 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK +RK+ +Q + K+LG+ S+ E GR P+++ K+ + D++ Sbjct: 1 MFGNRLKQLRKNNNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFGVSTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|257792570|ref|YP_003183176.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325832727|ref|ZP_08165490.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257476467|gb|ACV56787.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325485866|gb|EGC88327.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 176 Score = 85.0 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 20/143 (13%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG ++ +RK +Q+E+A V+ +E + S+ A L Y +S D + Sbjct: 2 VGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLYGVSLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 EV + + + L K R + E + + Sbjct: 62 ADEVEVVVADPDQAAGKPRDLHVLRHLEGKQCRICYRYTHDEI------------DIFKA 109 Query: 150 RTIPEIKPARKIKQVTKKHLDWI 172 ++P K +V W+ Sbjct: 110 VSMP-----EK-ARVLDVSDGWL 126 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +L +RK +GMSQ E LG+ T+SN+E + P + A + ++ LD + Sbjct: 1 MVGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLYGVSLDDL 60 >gi|293376878|ref|ZP_06623096.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644488|gb|EFF62580.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 330 Score = 85.0 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +GT+I +RK +Q+E+A A++ +E GM + + L +E D + Sbjct: 5 QLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDLDGL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + N K L + Sbjct: 65 IGIKSDIKEEPVELNLKPLKWMYLTQ 90 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 43/77 (55%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + +G ++ ++RK +GMSQ E LG+ +SN+E+G T P+++ K+ + + Sbjct: 1 MEHHQLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETD 60 Query: 169 LDWIYFGDEVIVPKSIK 185 LD + I + ++ Sbjct: 61 LDGLIGIKSDIKEEPVE 77 >gi|167754509|ref|ZP_02426636.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402] gi|237733852|ref|ZP_04564333.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167705341|gb|EDS19920.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402] gi|229383190|gb|EEO33281.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 242 Score = 85.0 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + RK +Q+E+A +V+ +E+G + + + + + + IS D + Sbjct: 5 DNLNKYRKQKGLSQEELAFRLGVSRQSVSKWESGQSTPELERIIEIADLFGISLDELIGH 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLK 119 E D D + + + K Sbjct: 65 ESNDYVTVDREELRSVVRHLFTYEYK 90 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L RK KG+SQ E LG+ ++S +E G++ PE++ +I + LD Sbjct: 1 MMFNDNLNKYRKQKGLSQEELAFRLGVSRQSVSKWESGQSTPELERIIEIADLFGISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS-KKDKKSS 203 + G E ++ R + + + KS Sbjct: 61 LI-GHESNDYVTVDREELRSVVRHLFTYEYKSK 92 >gi|257875245|ref|ZP_05654898.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257809411|gb|EEV38231.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 204 Score = 84.6 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK+ R TQ+E++ ++ +EN + I + L + Y+I + + Sbjct: 3 IAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLESLL 62 Query: 92 DGEVIDRRYEDVTNKKR 108 E + E +++K+ Sbjct: 63 KPEQLAEEPEIKSDEKK 79 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 39/83 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R G++Q E + L + T+SN+E R+ P+I K+ + + L+ Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLES 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + +++ IK + + + Sbjct: 61 LLKPEQLAEEPEIKSDEKKPTFR 83 >gi|53718188|ref|YP_107174.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167814172|ref|ZP_02445852.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|52208602|emb|CAH34538.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 158 Score = 84.6 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 47/143 (32%), Gaps = 5/143 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWI 90 + R++ IRK +Q E+A A+ + + E G + + L + + Sbjct: 12 LSERLRTIRKRAGLSQDELAARASLARTNLASVEQGRRANLRLSTLSRLADVLGVDVLDF 71 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + + + + A +K +R + G+SQ + + E Sbjct: 72 FCDRPVGEQEPAGEDAPA----RVIANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEA 127 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 P + + + + + Sbjct: 128 ASPMVVDLQDLADALGISIPALL 150 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P V +K +R +Q+ +++ A++ + V EN S + L + Sbjct: 81 EPAGEDAPARVIANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEAASPMVVDLQDLAD 140 Query: 82 EYEISFDWIYD 92 IS + + Sbjct: 141 ALGISIPALLE 151 >gi|157324992|ref|YP_001468418.1| gp33 [Listeria phage A500] gi|66733000|gb|AAY52819.1| gp33 [Listeria phage A500] Length = 142 Score = 84.6 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K +RK NKTQ++++ A + ENG + + L N +E+S D++ Sbjct: 2 FGNRLKQLRKNTNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFEVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +D A +K I Sbjct: 62 GKSNNGLVDTI---AAHIDADASEEDIKEI 88 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK +RK+ +Q + K+LG+ S+ E GR P+++ K+ + + D++ Sbjct: 1 MFGNRLKQLRKNTNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFEVSTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|260438757|ref|ZP_05792573.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292808744|gb|EFF67949.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 267 Score = 84.6 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +RK +Q+ +A ++ +E G + + L + + +S D++ Sbjct: 3 LGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFSVSSDYLI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E+ + + + Sbjct: 63 KDEMTEPDELPYKKRNYRLSERSKRII 89 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 45/87 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ +RK +G+SQ + + + T+S +E G+++P++ ++ + D+ Sbjct: 1 MTLGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFSVSSDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + + + + + S++SK+ Sbjct: 61 LIKDEMTEPDELPYKKRNYRLSERSKR 87 >gi|304439932|ref|ZP_07399826.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371671|gb|EFM25283.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 138 Score = 84.6 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+++RK +Q E+A A++ +EN I + L + +E+S D++ Sbjct: 2 NLSDRIRELRKIKGISQDELAEKLGVSRQAISKWENEQSIPDIDKIIMLSDYFEVSTDYL 61 Query: 91 YDG 93 G Sbjct: 62 LKG 64 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 37/74 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK KG+SQ E + LG+ +S +E ++IP+I + + D+ Sbjct: 1 MNLSDRIRELRKIKGISQDELAEKLGVSRQAISKWENEQSIPDIDKIIMLSDYFEVSTDY 60 Query: 172 IYFGDEVIVPKSIK 185 + G E + + K Sbjct: 61 LLKGVETVKSMNKK 74 >gi|315649281|ref|ZP_07902370.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275269|gb|EFU38638.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 122 Score = 84.6 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 35/80 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G RI ++R+ TQ+E+A +A++ +E L + +++S D++ Sbjct: 2 NYGVRISELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 ++ D + +D Sbjct: 62 IGRTAQEKAVLDPEVRSFVD 81 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+ +R+ +G +Q E +G+ + LS+YE+ R P+ + ++ + +D+ Sbjct: 1 MNYGVRISELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDY 60 Query: 172 IY 173 + Sbjct: 61 LI 62 >gi|257469363|ref|ZP_05633457.1| hypothetical protein FulcA4_08479 [Fusobacterium ulcerans ATCC 49185] gi|317063609|ref|ZP_07928094.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689285|gb|EFS26120.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 168 Score = 84.6 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 39/79 (49%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +I+ +RK N +Q+++A +V+ +E+G I + L N +E++ D++ Sbjct: 6 KIQQLRKQNGMSQEKLAQLLGVSRQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLKDV 65 Query: 95 VIDRRYEDVTNKKRLDPYA 113 ++ + + +K D A Sbjct: 66 AEEKCIDILRKEKEKDVLA 84 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK GMSQ + +LLG+ ++S +E G+++PEI ++ + + D++ + Sbjct: 7 IQQLRKQNGMSQEKLAQLLGVSRQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLL--KD 64 Query: 178 VIVPKSIKRAKGNQSS 193 V K I + + Sbjct: 65 VAEEKCIDILRKEKEK 80 >gi|304439266|ref|ZP_07399183.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372234|gb|EFM25823.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 185 Score = 84.6 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RK N +Q+E+A+ AV+ +E+G + + + + + ++ D+I Sbjct: 2 NMADRIQYLRKTNGISQEELAVKVGVSRQAVSKWESGQSLPDLEKIITMSDYFGVTTDYI 61 Query: 91 YDG 93 G Sbjct: 62 LKG 64 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 38/77 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK G+SQ E +G+ +S +E G+++P+++ + D+ Sbjct: 1 MNMADRIQYLRKTNGISQEELAVKVGVSRQAVSKWESGQSLPDLEKIITMSDYFGVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 I G E + K K ++ Sbjct: 61 ILKGIEPVADKEQKSSE 77 >gi|70727667|ref|YP_254583.1| hypothetical protein SH2668 [Staphylococcus haemolyticus JCSC1435] gi|68448393|dbj|BAE05977.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 190 Score = 84.6 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ R+ +Q+ +A ++ +EN I L + + +S D + Sbjct: 2 EIGQQIRKYREKEKYSQEYLAEKLYVSRQTISNWENERSYPDIHNLLMMCTLFNVSLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G+V +E+V K +D + + Sbjct: 62 VKGDVKRMGHEEVK--KDMDFWTWMMLI 87 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ R+ + SQ + L + T+SN+E R+ P+I + + LD Sbjct: 1 MEIGQQIRKYREKEKYSQEYLAEKLYVSRQTISNWENERSYPDIHNLLMMCTLFNVSLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVKGD 65 >gi|307243365|ref|ZP_07525525.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] gi|306493257|gb|EFM65250.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] Length = 104 Score = 84.6 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 38/80 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N TQ ++A N +S ++ +ENG+ S+ + + +E+S D++ Sbjct: 4 LGNRIKLLRKEFNMTQTDLANRLNLTKSNISKYENGIVEPSLDILRSMSDLFEVSVDYLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDP 111 I E D Sbjct: 64 GRTNIRNHPETFAAHTDEDM 83 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K +RK+ M+Q + L + S +S YE G P + R + + + +D++ Sbjct: 6 NRIKLLRKEFNMTQTDLANRLNLTKSNISKYENGIVEPSLDILRSMSDLFEVSVDYLL 63 >gi|223933458|ref|ZP_03625443.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|330831854|ref|YP_004400679.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223897896|gb|EEF64272.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329306077|gb|AEB80493.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 121 Score = 84.6 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 37/90 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +I+ +R A N +Q E+A AV+ +ENG + I + L + +S D++ Sbjct: 3 QLAQQIRILRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDYL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 G+ ++ K + K Sbjct: 63 VLGKEPEKEIVVEQRGKMNGWEFLSEESKR 92 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +++ +R K +SQ E + L + +S +E G P+I ++ ++ LD Sbjct: 1 MNQLAQQIRILRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLD 60 Query: 171 WIYFGDEVIVPKSIKR 186 ++ G E +++ Sbjct: 61 YLVLGKEPEKEIVVEQ 76 >gi|332983435|ref|YP_004464876.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332701113|gb|AEE98054.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 127 Score = 84.6 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 40/102 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++R+ +Q E+A + A++ +ENG+ + + N + +S D++ Sbjct: 2 NRIKELREEAKISQAELASILGVTQQALSNYENGLREPDLDTINKIANYFGVSIDYLLCR 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + K + + R++ + + L Sbjct: 62 TNVRNSDVIEEAIKDDPELERIWNMLNNREEVRLMFKKIADL 103 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +R++ +SQ E +LG+ LSNYE G P++ KI +D++ Sbjct: 1 MNRIKELREEAKISQAELASILGVTQQALSNYENGLREPDLDTINKIANYFGVSIDYLLC 60 Query: 175 GDEVIVPKSIKRA 187 V I+ A Sbjct: 61 RTNVRNSDVIEEA 73 >gi|115334658|ref|YP_764504.1| immunity repressor protein [Geobacillus phage GBSV1] gi|84688608|gb|ABC61304.1| immunity repressor protein [Geobacillus phage GBSV1] Length = 148 Score = 84.6 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 1/130 (0%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +RKA TQ+E+ N + +++ +E+G + + L + ++S D++ Sbjct: 5 QRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDYLLGR 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + + D I L+ I F G+ L ++ I Sbjct: 65 DNTQPTDTKLPALTEKDERDIQKELEKIINGLKTG-SGFAAFGGVDIDELDEEDRELLIA 123 Query: 154 EIKPARKIKQ 163 ++ + ++ + Sbjct: 124 SLENSLRLAK 133 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 41/91 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL+ +RK KG++Q E G+ + + ++S YE G P++ + + +D+ Sbjct: 1 MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + D + A + + +K+ + Sbjct: 61 LLGRDNTQPTDTKLPALTEKDERDIQKELEK 91 >gi|257877834|ref|ZP_05657487.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257812000|gb|EEV40820.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 168 Score = 84.2 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 38/75 (50%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ + + ++ + G +IK++R NN TQ++ A + AV+ +EN + + Sbjct: 1 MLKSHQRKEEKMEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIA 60 Query: 79 LRNEYEISFDWIYDG 93 + +E+S D + G Sbjct: 61 IATIFELSLDELILG 75 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 46/97 (47%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +++++ + G ++K +R ++Q +F L + +SN+E R +P+++ Sbjct: 1 MLKSHQRKEEKMEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIA 60 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 I + + LD + G + + K K ++++K Sbjct: 61 IATIFELSLDELILGGTQVNKITEKLIKDGSETRRAK 97 >gi|332654251|ref|ZP_08419995.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517337|gb|EGJ46942.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 84.2 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI RK +Q+++ AV+ +E+G + + Y + + +S DW+ Sbjct: 2 ELKERIALARKQAGLSQEQLGEKLGVSRQAVSKWESGQNNPDVAYLAEMCRLFGVSSDWL 61 Query: 91 YDGEVIDRRYED 102 G+ ++ Sbjct: 62 LLGKETEQASAP 73 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 35/75 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+ RK G+SQ + G+ LG+ +S +E G+ P++ ++ ++ DW Sbjct: 1 MELKERIALARKQAGLSQEQLGEKLGVSRQAVSKWESGQNNPDVAYLAEMCRLFGVSSDW 60 Query: 172 IYFGDEVIVPKSIKR 186 + G E + R Sbjct: 61 LLLGKETEQASAPAR 75 >gi|223986619|ref|ZP_03636613.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM 12042] gi|223961414|gb|EEF65932.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM 12042] Length = 400 Score = 84.2 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G RI +RKA N TQ+++A N A++ +E G I L + ++ D Sbjct: 4 EAMGKRIAQLRKARNLTQQQLADQLNVTNRAISRWERGEGYPEITLLPKLADSLGVTTDE 63 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 I + + ++ Sbjct: 64 ILGHRTRKQPGMRFAQQPQV 83 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A+G R+ +RK + ++Q + L + N +S +E+G PEI K+ Sbjct: 1 MDAEAMGKRIAQLRKARNLTQQQLADQLNVTNRAISRWERGEGYPEITLLPKLADSLGVT 60 Query: 169 LDWIY 173 D I Sbjct: 61 TDEIL 65 >gi|269105141|ref|ZP_06157835.1| hypothetical protein VDA_000106 [Photobacterium damselae subsp. damselae CIP 102761] gi|312621098|ref|YP_003993826.1| hypothetical protein pPHDD1_p144 [Photobacterium damselae subsp. damselae] gi|268160591|gb|EEZ39090.1| hypothetical protein VDA_000106 [Photobacterium damselae subsp. damselae CIP 102761] gi|311872819|emb|CBX86910.1| hypothetical protein [Photobacterium damselae subsp. damselae] Length = 208 Score = 84.2 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 65/174 (37%), Gaps = 12/174 (6%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I IR+ + +MA N + E G C + + + + ++ ++ + Sbjct: 25 KKIAFIREQKKISALQMAKSINVTINTYVNIERGRCDIKLDNLILIAHYLDVCPSYLLNR 84 Query: 94 E------------VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 E +I+ + + K + + RL+ IR+ K SQ ++L Sbjct: 85 EHVSLSSYSTLELLIELSSREFNDHKVKTNFFMYDRLREIRQKKCFSQKYMTEVLNCSQD 144 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 E G+ P + K+ + H +++ G + + K + N+ + + Sbjct: 145 HYLKIESGKRSPRLNFYAKLVSELEIHPNFLIHGTSLSLSKYNELEIINELNSR 198 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D ++ IR+ K +S ++ K + + +T N E+GR ++ I Sbjct: 20 MDWI--YKKIAFIREQKKISALQMAKSINVTINTYVNIERGRCDIKLDNLILIAHYLDVC 77 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 ++ + V + + S + D K Sbjct: 78 PSYLLNREHVSLSSYSTLELLIELSSREFNDHK 110 >gi|257877826|ref|ZP_05657479.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811992|gb|EEV40812.1| predicted protein [Enterococcus casseliflavus EC20] Length = 209 Score = 84.2 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G IK++R++ TQK +A N AV+ +E + I+ + L N + +S D + Sbjct: 3 DLGKNIKELRQSKKMTQKSLAKMLNVTPQAVSKWERNESNPDIQTLISLSNYFNVSVDEM 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + KK L Sbjct: 63 LGRKRPTFFETLFSKKKGYQQMEKTGDL 90 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +K +R+ K M+Q K+L + +S +E+ + P+I+ + +D Sbjct: 1 MLDLGKNIKELRQSKKMTQKSLAKMLNVTPQAVSKWERNESNPDIQTLISLSNYFNVSVD 60 Query: 171 WIY 173 + Sbjct: 61 EML 63 >gi|56421725|ref|YP_149043.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56381567|dbj|BAD77475.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 135 Score = 84.2 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +K +RK TQ+E+A N S ++ +ENG ++ L +++S D Sbjct: 1 MTNLGETLKQLRKQRRWTQEELAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFDVSAD 60 Query: 89 WIYDGEVI 96 ++ GE Sbjct: 61 FLLGGETR 68 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +RK + +Q E + L + S +S +E G +P+++ K+ Q+ D++ G Sbjct: 6 ETLKQLRKQRRWTQEELAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFDVSADFLLGG 65 Query: 176 D 176 + Sbjct: 66 E 66 >gi|296450909|ref|ZP_06892658.1| helix-turn-helix domain protein [Clostridium difficile NAP08] gi|296878611|ref|ZP_06902616.1| helix-turn-helix domain protein [Clostridium difficile NAP07] gi|296260281|gb|EFH07127.1| helix-turn-helix domain protein [Clostridium difficile NAP08] gi|296430418|gb|EFH16260.1| helix-turn-helix domain protein [Clostridium difficile NAP07] Length = 258 Score = 84.2 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I +RK +Q+ +A A++ +EN L L N +E+S D++ Sbjct: 3 LGEKIFKLRKEKGISQEALAEQIGTTRQAISKWENNQGFPETEKLLQLSNIFEVSTDYLL 62 Query: 92 DGEVIDRRYED 102 E + E+ Sbjct: 63 KDEKNVKNSEE 73 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 36/74 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ +RK+KG+SQ + +G +S +E + PE + ++ + + D+ Sbjct: 1 MSLGEKIFKLRKEKGISQEALAEQIGTTRQAISKWENNQGFPETEKLLQLSNIFEVSTDY 60 Query: 172 IYFGDEVIVPKSIK 185 + ++ + + Sbjct: 61 LLKDEKNVKNSEER 74 >gi|160945921|ref|ZP_02093147.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium prausnitzii M21/2] gi|158443652|gb|EDP20657.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium prausnitzii M21/2] Length = 169 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 41/94 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R++ + +I+ RK +Q+++A A+ +ENG+ S + + L ++ Sbjct: 3 VRRFTMKLPEKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFK 62 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +S D++ + + + K + A L Sbjct: 63 VSTDYLLKDNLTEPTPPQESALKGKQRMSWRAWL 96 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +++ RK G+SQ + + +G+ ++ +E G PE++ + + K D+ Sbjct: 8 MKLPEKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDY 67 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + D + P + + + S Sbjct: 68 LLK-DNLTEPTPPQESALKGKQRMS 91 >gi|291302787|ref|YP_003514065.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572007|gb|ADD44972.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 503 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +RK T S +++ ENG + L E +S D + Sbjct: 35 LGKRIRHLRKQRGMTLDAFGEAIGTAPSQLSMIENGKREPKLSMLRALARELGVSSDELL 94 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E +RR +R + L Sbjct: 95 RTEPPNRRVALEIELERAQQSSGYQSL 121 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 LD ++G R++ +RK +GM+ FG+ +G S LS E G+ P++ R + + Sbjct: 30 LDLISLGKRIRHLRKQRGMTLDAFGEAIGTAPSQLSMIENGKREPKLSMLRALARELGVS 89 Query: 169 LDWIYFGDEV--IVPKSIKRAKGNQSS 193 D + + V I+ + QSS Sbjct: 90 SDELLRTEPPNRRVALEIELERAQQSS 116 >gi|319935773|ref|ZP_08010202.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319809208|gb|EFW05657.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 255 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 29/79 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ ++ +RK +Q+ +A AV+ +E S + L Y IS D + Sbjct: 4 EIANKLLQLRKEKGYSQEALAQELGISRQAVSKWERAEASPDTDNLIELAKLYGISLDQL 63 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E + + + Sbjct: 64 LLHEPTETEETISDKTEDM 82 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +L +RK+KG SQ + LG+ +S +E+ P+ ++ ++ LD Sbjct: 2 NIEIANKLLQLRKEKGYSQEALAQELGISRQAVSKWERAEASPDTDNLIELAKLYGISLD 61 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + ++I + + + K Sbjct: 62 QLLLHEPTETEETISDKTEDMKESQEEYAYK 92 >gi|313897216|ref|ZP_07830760.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957937|gb|EFR39561.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 212 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 4/110 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+ +RK +Q+E+A A AV+ +E+ + + + + + + ++ D+I Sbjct: 2 KLAERIQYLRKMKGISQEELAEKAGVSRQAVSKWESDQSTPDVEKIIIMSDYFGVTTDYI 61 Query: 91 YDG----EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 G E +++ ++ +K A + G + + + Sbjct: 62 LKGIQTVESKEQKSRELASKVLYISSAAFVVIGLFCAFGGWYAQQTMEAV 111 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 36/77 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK KG+SQ E + G+ +S +E ++ P+++ + D+ Sbjct: 1 MKLAERIQYLRKMKGISQEELAEKAGVSRQAVSKWESDQSTPDVEKIIIMSDYFGVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 I G + + K K + Sbjct: 61 ILKGIQTVESKEQKSRE 77 >gi|154500477|ref|ZP_02038515.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] gi|150270708|gb|EDM98004.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] Length = 259 Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +R+ +Q+E+A AV +E+G +I + + + ++ D++ G Sbjct: 4 ERLYQLRRERGISQEELANIIGVSRQAVQKWESGASQPNIDNLVAISEYFGVTLDYLLKG 63 Query: 94 EVI 96 + Sbjct: 64 DEP 66 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL +R+++G+SQ E ++G+ + +E G + P I I + LD++ Sbjct: 1 MFEERLYQLRRERGISQEELANIIGVSRQAVQKWESGASQPNIDNLVAISEYFGVTLDYL 60 Query: 173 YFGDEVIVPKS-IKRAKGNQSS---KKSKKDKKSS 203 GDE +S I +Q ++ + KSS Sbjct: 61 LKGDEPGWEESDIPFEDTSQVICAPYRTHYEYKSS 95 >gi|310659741|ref|YP_003937462.1| BcrR protein [Clostridium sticklandii DSM 519] gi|308826519|emb|CBH22557.1| BcrR [Clostridium sticklandii] Length = 203 Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 43/88 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ +RK NN TQ+++A +AV+ +E+G SI + ++IS D + Sbjct: 2 ELGEKLQQLRKQNNWTQEQLAEQLYISRTAVSKWESGKGYPSIDSLKNISALFKISIDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G+ + + + + + + L Sbjct: 62 LSGDELVQLATNENKENVENITGMIYGL 89 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 35/69 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +L+ +RK +Q + + L + + +S +E G+ P I + I + K +D Sbjct: 1 MELGEKLQQLRKQNNWTQEQLAEQLYISRTAVSKWESGKGYPSIDSLKNISALFKISIDD 60 Query: 172 IYFGDEVIV 180 + GDE++ Sbjct: 61 LLSGDELVQ 69 >gi|291543534|emb|CBL16643.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 201 Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++++RK TQ+E+A +AV+ +E+G SI + + +S D + Sbjct: 2 EFHEKLQELRKQRGMTQEELATALYVSRTAVSKWESGRGYPSIDSLKAISGFFGVSLDQL 61 Query: 91 YDGE 94 E Sbjct: 62 LSSE 65 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +RK +GM+Q E L + + +S +E GR P I + I LD Sbjct: 1 MEFHEKLQELRKQRGMTQEELATALYVSRTAVSKWESGRGYPSIDSLKAISGFFGVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + E ++ + +K +S +S Sbjct: 61 LLS-SEAVLTLVEEDSKKQESRTRS 84 >gi|328958487|ref|YP_004375873.1| conserved hypothetical protein; possible transcriptional regulator [Carnobacterium sp. 17-4] gi|328674811|gb|AEB30857.1| conserved hypothetical protein; possible transcriptional regulator [Carnobacterium sp. 17-4] Length = 183 Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 35/93 (37%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G R+K+ R + +Q ++A +++ +E G + + L YE+S Sbjct: 10 ERHMALGERLKESRVSKGFSQGDVAEHLQISRQSISKWETGNGYPDLDNLVKLSVYYEVS 69 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 D + + K + + ++ Sbjct: 70 IDDLLKENQKLKNKIHENEIKIEENHQKLDFIR 102 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 38/81 (46%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + N++ A+G RLK R KG SQ + + L + ++S +E G P++ K+ Sbjct: 3 EENNQEGERHMALGERLKESRVSKGFSQGDVAEHLQISRQSISKWETGNGYPDLDNLVKL 62 Query: 162 KQVTKKHLDWIYFGDEVIVPK 182 + +D + ++ + K Sbjct: 63 SVYYEVSIDDLLKENQKLKNK 83 >gi|298240977|ref|ZP_06964784.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297554031|gb|EFH87895.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 293 Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 1/169 (0%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R+ + +Q+E+A + ++ +ENG Y L YE ++ + Sbjct: 7 LKRARQERSYSQEEVAGALGVAVTTISRWENGHVELRAYYRRRLAALYEKKPGELFPALM 66 Query: 96 I-DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 ++ L+ R+ + SQ + + +G ++S +EQG +P Sbjct: 67 AGKMIDLSPEEQQPEGQGEHRNYLRRERRLRNWSQEDLAQKVGAARGSISRWEQGYVLPN 126 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + +V ++ E +S A + + D +S Sbjct: 127 RHYMWEFCRVFGMRRRDLFPSLEARQKQSTTLASASVDRSGREADAESR 175 Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK R+++ SQ E LG+ +T+S +E G R++ + +K Sbjct: 1 MKMKNVLKRARQERSYSQEEVAGALGVAVTTISRWENGHVELRAYYRRRLAALYEKKPGE 60 Query: 172 IY 173 ++ Sbjct: 61 LF 62 >gi|227513202|ref|ZP_03943251.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227083583|gb|EEI18895.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 132 Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D GTR+K +R + TQ+E+ N +++++L+E + S + L N + +S D++ Sbjct: 5 DFGTRLKQLRTEHKLTQEELGKKINVSKASISLYEKNLREPSKDSLVTLANFFNVSTDYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 G IDR + D + L+ Sbjct: 65 L-GNTIDRNGHTPSWATNDDKKDLKRFLEE 93 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 8/94 (8%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G RLK +R + ++Q E GK + + +++S YE+ P + Sbjct: 1 MIHLDFGTRLKQLRTEHKLTQEELGKKINVSKASISLYEKNLREPSKDSLVTLANFFNVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 D++ + G+ S + DKK Sbjct: 61 TDYLLG--------NTIDRNGHTPSWATNDDKKD 86 >gi|218290870|ref|ZP_03494934.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239137|gb|EED06339.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 161 Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 54/134 (40%), Gaps = 8/134 (5%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R++ +R+ N TQ+E N + V+ +E+G+ + + + + + +++S D++ Sbjct: 9 SRLRLLRQMKNWTQEEFGRKLNVSKVTVSSYESGVRTPDAKTLIKIADLFDVSVDYLLGR 68 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL--------GMPNSTLSN 145 D + R +++ ++ ++ ++L + T Sbjct: 69 TDGKNEGYTSEVLVSEDEKELLERFRNLSENDAKVLLQLARVLERRGQISDELSPVTQII 128 Query: 146 YEQGRTIPEIKPAR 159 EQG+ PE Sbjct: 129 TEQGKHEPENGTIH 142 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ +RL+ +R+ K +Q EFG+ L + T+S+YE G P+ K KI + +D++ Sbjct: 6 ALTSRLRLLRQMKNWTQEEFGRKLNVSKVTVSSYESGVRTPDAKTLIKIADLFDVSVDYL 65 Query: 173 YFGDEVIVPKSIKRAKGNQSSKK 195 + ++ K+ Sbjct: 66 LGRTDGKNEGYTSEVLVSEDEKE 88 >gi|304315786|ref|YP_003850931.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777288|gb|ADL67847.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 126 Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 33/82 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +RK N TQK++A SA+ L+E + + + + +S D++ Sbjct: 2 IGDKLKSLRKIKNVTQKDIADYLGVSPSAIGLYEQNRREPDLETVQKIADFFNVSVDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 +RL Sbjct: 62 GRTNKRNVDTSDDVDERLHKVM 83 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +LKS+RK K ++Q + LG+ S + YEQ R P+++ +KI +D++ Sbjct: 1 MIGDKLKSLRKIKNVTQKDIADYLGVSPSAIGLYEQNRREPDLETVQKIADFFNVSVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|291563848|emb|CBL42664.1| Predicted transcriptional regulator with C-terminal CBS domains [butyrate-producing bacterium SS3/4] Length = 181 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 12/133 (9%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R+ T +++A + + S V ++ENG A+ L + EI +Y Sbjct: 46 DNLKYYRQRKQMTTRQLAEKLDIVPSTVVMYENGKHPIPYDVAIKLADVLEIEASLLY-- 103 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + LKS+R G+SQ +F + +G+ S E+G P Sbjct: 104 ----------DDFSHFLSVPYTEALKSVRTALGLSQKDFAERIGIVPSYYYKIEEGNRRP 153 Query: 154 EIKPARKIKQVTK 166 K ++ K Sbjct: 154 SRKVYHQMCVALK 166 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK R+ K M+ + + L + ST+ YE G+ A K+ V + + Sbjct: 44 PSDNLKYYRQRKQMTTRQLAEKLDIVPSTVVMYENGKHPIPYDVAIKLADVLEIEAS-LL 102 Query: 174 FGD 176 + D Sbjct: 103 YDD 105 >gi|332638348|ref|ZP_08417211.1| XRE family transcriptional regulator [Weissella cibaria KACC 11862] Length = 180 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I+ R+ +Q+++A +++ +ENG S + L L + + +S D + Sbjct: 2 EIGHNIQQRREDKGMSQQDLADYLGISRQSISKWENGSALPSFKNVLALSDLFVVSLDEL 61 Query: 91 YDGEV 95 G+ Sbjct: 62 VKGDE 66 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ R+DKGMSQ + LG+ ++S +E G +P K + + LD Sbjct: 1 MEIGHNIQQRREDKGMSQQDLADYLGISRQSISKWENGSALPSFKNVLALSDLFVVSLDE 60 Query: 172 IYFGDEVIVPK 182 + GDE ++ K Sbjct: 61 LVKGDEALIEK 71 >gi|225569760|ref|ZP_03778785.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM 15053] gi|225161230|gb|EEG73849.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM 15053] Length = 160 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 41/92 (44%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +K R+ TQ+ ++ N A++ +E G + + L N Y++S D Sbjct: 5 KTLGENLKSARQKKQFTQEYVSRQLNISRQAISKWETGKGYPDLDNLVLLSNLYDVSLDE 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + ++ ++N + A ++ + Sbjct: 65 LMNNKNKLQKSFRISNSSPCSEELLFAHIEEL 96 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LKS R+ K +Q + L + +S +E G+ P++ + + LD + Sbjct: 9 ENLKSARQKKQFTQEYVSRQLNISRQAISKWETGKGYPDLDNLVLLSNLYDVSLDELMNN 68 Query: 176 DEVIVPK 182 + Sbjct: 69 KNKLQKS 75 >gi|163791661|ref|ZP_02186057.1| DNA-binding protein [Carnobacterium sp. AT7] gi|159873083|gb|EDP67191.1| DNA-binding protein [Carnobacterium sp. AT7] Length = 170 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R +Q ++A + +++ +ENG + + L YE+S D + Sbjct: 3 LGERLKASRVNKGYSQGDVADYLHISRQSISKWENGNSYPDLDNLVKLSTYYEVSIDELL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 +R + K + ++ Sbjct: 63 KENQELKRKIEENEVKIEENVQKLDFIR 90 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 37/75 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G RLK+ R +KG SQ + L + ++S +E G + P++ K+ + +D Sbjct: 1 MALGERLKASRVNKGYSQGDVADYLHISRQSISKWENGNSYPDLDNLVKLSTYYEVSIDE 60 Query: 172 IYFGDEVIVPKSIKR 186 + ++ + K + Sbjct: 61 LLKENQELKRKIEEN 75 >gi|312868567|ref|ZP_07728762.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095864|gb|EFQ54113.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 204 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D T+IK R+ TQ ++A ++ +E G + + L Y++S D + Sbjct: 2 DFSTQIKQQRQQLGLTQADVASQLFVTRQTISNWEQGKSYPDLSMLVKLSEVYQVSLDSL 61 Query: 91 YDGEVIDRRYEDVTN 105 G+ + Y + Sbjct: 62 LKGDAQLKNYLEQGK 76 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K R+ G++Q + L + T+SN+EQG++ P++ K+ +V + LD Sbjct: 1 MDFSTQIKQQRQQLGLTQADVASQLFVTRQTISNWEQGKSYPDLSMLVKLSEVYQVSLDS 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LLKGD 65 >gi|291531329|emb|CBK96914.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 168 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 10/108 (9%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +K +RK TQ+++A V+ +ENG I + L + YE+ Sbjct: 3 QQKIGEFLKYLRKNKGLTQEQLAEHFCVSSRTVSRWENGNNMPDIDILIELADFYEVDIR 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + DGE + +D +K+ + M ++ K + Sbjct: 63 ELIDGE---------RKSENMDKKTKETVIKAA-EYMNMGTEQYTKRV 100 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 38/80 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG LK +RK+KG++Q + + + + T+S +E G +P+I ++ + Sbjct: 1 MNQQKIGEFLKYLRKNKGLTQEQLAEHFCVSSRTVSRWENGNNMPDIDILIELADFYEVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAK 188 + + G+ K + Sbjct: 61 IRELIDGERKSENMDKKTKE 80 >gi|332654130|ref|ZP_08419874.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium D16] gi|332517216|gb|EGJ46821.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium D16] Length = 259 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK + +Q+ +A AV +E G + L + +S D++ G Sbjct: 7 QRLYELRKQSGLSQEGLADLLGVSRQAVQKWEAGTSRPDLDNLAALGRYFNVSLDYLVTG 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR-LKSIRKDKGMSQIEF 132 + VT + Y KS R G+ + Sbjct: 67 QEAQVSPSQVTTTIVNNYYTPFHYEYKSKRTLFGLPLVHI 106 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL +RK G+SQ LLG+ + +E G + P++ + + LD+ Sbjct: 3 MEFQQRLYELRKQSGLSQEGLADLLGVSRQAVQKWEAGTSRPDLDNLAALGRYFNVSLDY 62 Query: 172 IYFGDE-VIVPKSIKRAKGNQSSKKSKKDKKSS 203 + G E + P + N + KS Sbjct: 63 LVTGQEAQVSPSQVTTTIVNNYYTPFHYEYKSK 95 >gi|325568711|ref|ZP_08145004.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157749|gb|EGC69905.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 263 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 41/88 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G IK+ R N TQ+++A ++ +ENG + + L N +E++ D++ Sbjct: 2 DIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSNYFELTLDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++T ++ + A L Sbjct: 62 LKEDKQMVQELNLTTHRKRIGLVLIALL 89 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 34/71 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K R + ++Q + + + +S +E G++ P++ K+ + LD+ Sbjct: 1 MDIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSNYFELTLDY 60 Query: 172 IYFGDEVIVPK 182 + D+ +V + Sbjct: 61 LLKEDKQMVQE 71 >gi|260664721|ref|ZP_05865573.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|260561786|gb|EEX27758.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] Length = 103 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 38/79 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +RIK +R ++ TQKE+A N + ++ +E G SI L + + +S +++ Sbjct: 2 NISSRIKYLRNEHHLTQKELAKMLNVKPTTISGWELGRNEPSIDTLKKLSSLFNVSTEYL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 GE D+ L Sbjct: 62 IGGEDNSSNTIDLKTTDVL 80 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 36/66 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +R+K +R + ++Q E K+L + +T+S +E GR P I +K+ + ++ Sbjct: 1 MNISSRIKYLRNEHHLTQKELAKMLNVKPTTISGWELGRNEPSIDTLKKLSSLFNVSTEY 60 Query: 172 IYFGDE 177 + G++ Sbjct: 61 LIGGED 66 >gi|228992527|ref|ZP_04152454.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM 12442] gi|229006074|ref|ZP_04163762.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228755150|gb|EEM04507.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228767161|gb|EEM15797.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM 12442] Length = 123 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 41/101 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK NN T KE+ N ES ++ +ENG + +E+S D++ Sbjct: 2 IGENLRKLRKTNNLTMKELGQKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++ D L +G K I+ Q E Sbjct: 62 GRDITKNTTRDTYTYNPLTDPDLGLWFKDIKDASPDKQEEL 102 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG L+ +RK ++ E G+ L + ST+S YE G P+ K + D++ Sbjct: 1 MIGENLRKLRKTNNLTMKELGQKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYL 60 Query: 173 YFGD 176 D Sbjct: 61 LGRD 64 >gi|253752177|ref|YP_003025318.1| DNA-binding membrane protein [Streptococcus suis SC84] gi|253754003|ref|YP_003027144.1| DNA-binding membrane protein [Streptococcus suis P1/7] gi|253755938|ref|YP_003029078.1| DNA-binding membrane protein [Streptococcus suis BM407] gi|251816466|emb|CAZ52102.1| putative DNA-binding membrane protein [Streptococcus suis SC84] gi|251818402|emb|CAZ56230.1| putative DNA-binding membrane protein [Streptococcus suis BM407] gi|251820249|emb|CAR46699.1| putative DNA-binding membrane protein [Streptococcus suis P1/7] gi|319758564|gb|ADV70506.1| putative DNA-binding membrane protein [Streptococcus suis JS14] Length = 158 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +IKD+RK TQ++ A+ N AV+ +EN + + + + + IS D + Sbjct: 2 NFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + K + L Sbjct: 62 ILGGTDMNNMTEKLVKDGREGRRTQMHL 89 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 42/87 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++K +RK KG++Q +F L + +SN+E + +P+++ + V LD Sbjct: 1 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + G + + K K + ++++ Sbjct: 61 LILGGTDMNNMTEKLVKDGREGRRTQM 87 >gi|42794875|gb|AAS45802.1| RegA [Streptomyces lavendulae] Length = 142 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 21/134 (15%) Query: 33 GTRIKDIRKANNK-TQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++++R TQ+++A S+V +E + + S D + Sbjct: 15 GGRLRELRIQRGLHTQRQLAEALGCARSSVTTWEASKSVPRPAMLFRIAALLDASPDDLI 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 D A +LK++R G+ Q + + LG+ ST + E+ R Sbjct: 75 D--------------------ASRVKLKTLRTACGLRQSDMAEALGVAPSTYCDVERQRQ 114 Query: 152 IPEIKPARKIKQVT 165 + + ++ Sbjct: 115 AIPDRWFPILAKIL 128 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 118 LKSIRKDKGMS-QIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R +G+ Q + + LG S+++ +E +++P +I + D + Sbjct: 18 LRELRIQRGLHTQRQLAEALGCARSSVTTWEASKSVPRPAMLFRIAALLDASPDDLI 74 >gi|294783591|ref|ZP_06748915.1| prophage Sa05, DNA-binding protein [Fusobacterium sp. 1_1_41FAA] gi|294480469|gb|EFG28246.1| prophage Sa05, DNA-binding protein [Fusobacterium sp. 1_1_41FAA] Length = 268 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 68/180 (37%), Gaps = 9/180 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISF 87 + + R+K+ R+ + T +++ ++ +EN G+ + + L N Y + Sbjct: 6 QEIIAKRLKEKREDSKLTLDDVSKIIGISTVTLHKYENLGILNIPVDKIEQLANLYNTNP 65 Query: 88 DWIYDGEVIDRRYEDVT--------NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 +I ID + + + L+ RLK IR+ + +EF +L + Sbjct: 66 SYIMGWSDIDNKSGNSRMDSLDVRVYNRYLNIIRGHERLKQIREHNEFTPLEFATMLDIS 125 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 L E G + + ++ + + GD + K ++ K+ K++ Sbjct: 126 VDELELLENGEQDIPLNVIKGLENIFHVPKEVWLIGDGISDETRDYIEKIAENQKREKEE 185 >gi|325264849|ref|ZP_08131577.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029838|gb|EGB91125.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 538 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK +Q++MA + AV +ENG + + + +++S D++ Sbjct: 2 LADKIGKLRKLRKISQEKMAEMFSVSRQAVQKWENGTSVPDLDNLVRIAEYFDVSLDYLI 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 +G+ E V +K Y+ Sbjct: 62 NGKDYQNTEEMVLTRKIEPSYSTMH 86 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 35/76 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +RK + +SQ + ++ + + +E G ++P++ +I + LD++ G + Sbjct: 6 IGKLRKLRKISQEKMAEMFSVSRQAVQKWENGTSVPDLDNLVRIAEYFDVSLDYLINGKD 65 Query: 178 VIVPKSIKRAKGNQSS 193 + + + + S Sbjct: 66 YQNTEEMVLTRKIEPS 81 >gi|251800099|ref|YP_003014830.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547725|gb|ACT04744.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 150 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK++R+ KG Q E + L + ++S +E + P I+ KI + +D Sbjct: 1 MVFGEKLKAMRQSKGWPQDELAEKLFVSRQSVSKWENNQNYPSIEIIIKISDLFGVTIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K IK ++ Sbjct: 61 LLRSDEELTQKVIKDSR 77 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 29/65 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +R++ Q E+A +V+ +EN SI + + + + ++ D + Sbjct: 3 FGEKLKAMRQSKGWPQDELAEKLFVSRQSVSKWENNQNYPSIEIIIKISDLFGVTIDELL 62 Query: 92 DGEVI 96 + Sbjct: 63 RSDEE 67 >gi|326201072|ref|ZP_08190944.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988640|gb|EGD49464.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 213 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RK +Q+++A AV+ +E+G I + + ++I+ D++ Sbjct: 2 NISDRIQSLRKTKGISQEQLADELGVSRQAVSKWESGQSMPDIEKIILMSEYFKITTDYL 61 Query: 91 YDG 93 G Sbjct: 62 LKG 64 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 41/75 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R++S+RK KG+SQ + LG+ +S +E G+++P+I+ + + K D+ Sbjct: 1 MNISDRIQSLRKTKGISQEQLADELGVSRQAVSKWESGQSMPDIEKIILMSEYFKITTDY 60 Query: 172 IYFGDEVIVPKSIKR 186 + G ++ + K+ Sbjct: 61 LLKGIDLPKDTTEKK 75 >gi|297531429|ref|YP_003672704.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254681|gb|ADI28127.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 135 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +K +RK TQ+++A N S ++ +ENG ++ L + IS D Sbjct: 1 MANLGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISAD 60 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 ++ GE R Sbjct: 61 FLLGGETRQRELLREVTDMY 80 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +RK + +Q + + L + S +S +E G +P+++ K+ Q+ D++ G Sbjct: 6 ETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISADFLLGG 65 Query: 176 D 176 + Sbjct: 66 E 66 >gi|167759352|ref|ZP_02431479.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] gi|167662909|gb|EDS07039.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] Length = 257 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 43/108 (39%), Gaps = 5/108 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ +R+ +Q+++A +V+ +E+G + + + L +++S D++ Sbjct: 2 EFSEKLIQLRRKQGMSQEQLADRLGITRQSVSKWESGSAAPELSKLITLSEMFQVSIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + E +++ + +R KG + G+ Sbjct: 62 VKDAEEPKGAEKEESRRLEEKVDNI-----VRYMKGYHYTSKAMIKGV 104 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 8/93 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L +R+ +GMSQ + LG+ ++S +E G PE+ + ++ + +D+ Sbjct: 1 MEFSEKLIQLRRKQGMSQEQLADRLGITRQSVSKWESGSAAPELSKLITLSEMFQVSIDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + K + KG + + + ++K N Sbjct: 61 LV--------KDAEEPKGAEKEESRRLEEKVDN 85 >gi|218779224|ref|YP_002430542.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760608|gb|ACL03074.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 433 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++D+GTRIK +R +Q +MA S ++ EN SI L + +S Sbjct: 251 FRDLGTRIKQLRVKKGLSQVQMAKMVGVTASTISQVENNSIYPSIPGLLKMAEILNVSPG 310 Query: 89 WIYDGEVIDRRYEDVTNKK 107 +++ + R + + Sbjct: 311 YLFSSDFEKRSQIVFPSGQ 329 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K +R KG+SQ++ K++G+ ST+S E P I K+ ++ +++ D Sbjct: 258 IKQLRVKKGLSQVQMAKMVGVTASTISQVENNSIYPSIPGLLKMAEILNVSPGYLFSSD 316 >gi|315640505|ref|ZP_07895613.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] gi|315483709|gb|EFU74197.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] Length = 139 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +I+ +RK TQ +A + AV+ +E G I+ L L + +++S D + Sbjct: 2 DIGEKIQLLRKEKQMTQNMVAEVLHVSTQAVSNWERGKGYPDIQNILQLSDLFDVSLDEL 61 Query: 91 YDGEVI 96 +V Sbjct: 62 IKEDVD 67 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +RK+K M+Q ++L + +SN+E+G+ P+I+ ++ + LD Sbjct: 1 MDIGEKIQLLRKEKQMTQNMVAEVLHVSTQAVSNWERGKGYPDIQNILQLSDLFDVSLDE 60 Query: 172 IYFGDEVIVPKSIKRA 187 + D + + Sbjct: 61 LIKEDVDFKDALLTKK 76 >gi|242237765|ref|YP_002985946.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242129822|gb|ACS84124.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 144 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 I+ E + + ++G RI +RK TQ ++A N + AV +E+G I Sbjct: 12 STMAASISSEEQTFMTELGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRRIQIS 71 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 + + +S D + + + + +L R Q + Sbjct: 72 ALPAVARQLSVSLDALLGDSHTPPPRKRGPASRLEQQIQMIGQLPRSR------QKLVSE 125 Query: 135 LLG 137 +L Sbjct: 126 MLD 128 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + ++++++ +G R+ ++RKD G++Q++ + L + + ++E GR Sbjct: 6 LPAQGSSTMAASISSEEQTFMTELGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGR 65 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 +I + + LD + GD P + Sbjct: 66 RRIQISALPAVARQLSVSLDALL-GDSHTPPPRKR 99 >gi|310826605|ref|YP_003958962.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308738339|gb|ADO35999.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 118 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G R++ +R++ +Q +MA +S++N +E G + S+ + + +++S D Sbjct: 1 MKELGERLRRLRESVKLSQVKMAELLGVKQSSINRYEQGQSAPSLETLVRYADYFDVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 ++ + K +K + Q + L Sbjct: 61 YLLARTDNPQGKLYEHRPK---IAPGSEEMKQFIEMCFDPQSPLNEKL 105 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 36/63 (57%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RL+ +R+ +SQ++ +LLG+ S+++ YEQG++ P ++ + LD Sbjct: 1 MKELGERLRRLRESVKLSQVKMAELLGVKQSSINRYEQGQSAPSLETLVRYADYFDVSLD 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|291302743|ref|YP_003514021.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571963|gb|ADD44928.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 194 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E+ + VG R++++R+ N T +A ES ++ E+G ++ L L Y Sbjct: 6 ELDEVLTAVGPRLRELRRQRNVTLARLAEATGISESTLSRLESGARRPNLELLLPLAKVY 65 Query: 84 EISFDWIY 91 + D + Sbjct: 66 GVPLDELV 73 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+ +R+ + ++ + G+ STLS E G P ++ + +V LD + Sbjct: 13 AVGPRLRELRRQRNVTLARLAEATGISESTLSRLESGARRPNLELLLPLAKVYGVPLDEL 72 Query: 173 Y 173 Sbjct: 73 V 73 >gi|311111417|ref|ZP_07712814.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311111482|ref|ZP_07712879.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066571|gb|EFQ46911.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066636|gb|EFQ46976.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] Length = 112 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+++R ++ +Q E++ + + + +ENG S L +++S D++ Sbjct: 2 IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYLL 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K + Sbjct: 62 GSDKTSEPKSVDLEKDPV 79 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 36/76 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R++ +R +SQ E KLL + T++ +E G+ P K+ + D++ Sbjct: 1 MIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYL 60 Query: 173 YFGDEVIVPKSIKRAK 188 D+ PKS+ K Sbjct: 61 LGSDKTSEPKSVDLEK 76 >gi|163941533|ref|YP_001646417.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863730|gb|ABY44789.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 123 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK NN T K++ N ES ++ +ENG + +E+S D++ Sbjct: 2 IGENLRKLRKTNNLTMKDLGKKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 +V +D L +G K I+ Q E Sbjct: 62 GRDVAKNTSKDNEAYNPLADPDLGLWFKDIKDASPDKQEEL 102 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG L+ +RK ++ + GK L + ST+S YE G P+ K + D++ Sbjct: 1 MIGENLRKLRKTNNLTMKDLGKKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYL 60 Query: 173 YFGD 176 D Sbjct: 61 LGRD 64 >gi|160895181|ref|ZP_02075954.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50] gi|156863215|gb|EDO56646.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50] Length = 101 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 37/82 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ RI+++R+ TQ +A N SAVN ++ G SI + L + + +S D++ Sbjct: 4 DISERIRELREVIGITQSNLASALNISRSAVNAWKMGTSKPSIDTLVDLADFFHVSTDYL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPY 112 + + + +D Sbjct: 64 LGRNELQLIEISGVSPEGVDII 85 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R++ +R+ G++Q L + S ++ ++ G + P I + D+ Sbjct: 3 MDISERIRELREVIGITQSNLASALNISRSAVNAWKMGTSKPSIDTLVDLADFFHVSTDY 62 Query: 172 IYFGDEVIV 180 + +E+ + Sbjct: 63 LLGRNELQL 71 >gi|153813857|ref|ZP_01966525.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756] gi|331088191|ref|ZP_08337110.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848253|gb|EDK25171.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756] gi|330408435|gb|EGG87901.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium 3_1_46FAA] Length = 215 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I ++RK + +Q + A N ++ +ENG + + + + ++IS D + Sbjct: 2 NIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISIDEL 61 Query: 91 YDGEVIDRRYEDVTNK 106 +V + D K Sbjct: 62 LKNDVQTVKKIDNEKK 77 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 40/81 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ ++RK G+SQ +F L + T+SN+E G++ P+++ K+ K +D Sbjct: 1 MNIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + D V K K + Sbjct: 61 LLKNDVQTVKKIDNEKKAKKK 81 >gi|291535748|emb|CBL08860.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Roseburia intestinalis M50/1] gi|291538243|emb|CBL11354.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Roseburia intestinalis XB6B4] Length = 334 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I + RK N +Q+E+A + AV+ +E+ ++ + L + +S D++ Sbjct: 3 LAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEIFGVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDP 111 E + + D Sbjct: 63 KDECETPQPIEGVEPSDKDF 82 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ RK G SQ E + L + +S +E ++IP+++ ++ ++ D+ Sbjct: 1 MILAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEIFGVSTDY 60 Query: 172 IYFGDEVIVPKSIK 185 + DE P+ I+ Sbjct: 61 LLK-DECETPQPIE 73 >gi|212640460|ref|YP_002316980.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561940|gb|ACJ34995.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 162 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G +I+ +R A++ TQ+++A N S V+ +ENG ++ + + + + +S D+ Sbjct: 28 QHIGEQIRRLRNAHDWTQEQLAQRLNVSRSKVSKWENGEVLPDLQSIIDMSDLFRVSTDF 87 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + D + +L IR Q K L Sbjct: 88 LLGKHPTDEQLLQEVRLAYGTNDMSDEQLSVIRYMN--EQPRLAKRL 132 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +++ +R +Q + + L + S +S +E G +P+++ + + + D++ Sbjct: 29 HIGEQIRRLRNAHDWTQEQLAQRLNVSRSKVSKWENGEVLPDLQSIIDMSDLFRVSTDFL 88 Query: 173 YFGDEVIVPKSIKRAK 188 G + ++ + Sbjct: 89 L-GKHPTDEQLLQEVR 103 >gi|238921784|ref|YP_002935298.1| hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC 27750] gi|238873456|gb|ACR73164.1| Hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC 27750] Length = 177 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 39/105 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G+ +K++RK + TQ+++A V+ +E G I L + Y++S Sbjct: 9 QKKIGSFLKELRKEKDITQEQLAEKIKVSGRTVSRWETGSNMPDISLLAQLADFYDVSIP 68 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 I DGE + + L + K + Sbjct: 69 EIIDGERKSENMNEEVKETVLKLSDYTETINQKIKGRLFVLTVIA 113 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + +D IG+ LK +RK+K ++Q + + + + T+S +E G +P+I ++ Sbjct: 1 MKGGNSMDQKKIGSFLKELRKEKDITQEQLAEKIKVSGRTVSRWETGSNMPDISLLAQLA 60 Query: 163 QVTKKHLDWIYFGD-------EVIVPKSIKRAKGNQSSKKSKK 198 + I G+ E + +K + ++ + K Sbjct: 61 DFYDVSIPEIIDGERKSENMNEEVKETVLKLSDYTETINQKIK 103 >gi|116491838|ref|YP_803573.1| XRE family transcriptional regulator [Pediococcus pentosaceus ATCC 25745] gi|116101988|gb|ABJ67131.1| Transcriptional regulator, xre family [Pediococcus pentosaceus ATCC 25745] Length = 190 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT ++ IR+A + TQ+E+A ++ +E G +I L Y +S D + Sbjct: 3 IGTTLQKIRQARDLTQQEVATQMYVTRQTISRWEQGKTMPNIYALKDLAQLYNVSLDQLV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIG 115 + + E K+++ A+ Sbjct: 63 ARHPSNSKEEAGHKMKKINWLALF 86 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG L+ IR+ + ++Q E + + T+S +EQG+T+P I + + Q+ LD Sbjct: 1 MSIGTTLQKIRQARDLTQQEVATQMYVTRQTISRWEQGKTMPNIYALKDLAQLYNVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + P + K G++ K Sbjct: 61 LV----ARHPSNSKEEAGHKMKK 79 >gi|261420641|ref|YP_003254323.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768311|ref|YP_004133812.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|261377098|gb|ACX79841.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|317113177|gb|ADU95669.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 135 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +K +RK TQ+++A N S ++ +ENG ++ L + IS D Sbjct: 1 MTNLGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISAD 60 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 ++ GE R Sbjct: 61 FLLGGETRQRELLREVTDMY 80 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +RK + +Q + + L + S +S +E G +P+++ K+ Q+ D++ G Sbjct: 6 ETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISADFLLGG 65 Query: 176 D 176 + Sbjct: 66 E 66 >gi|282601309|ref|ZP_06257987.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569451|gb|EFB74986.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 117 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 3/120 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +VG R+K +R++ +Q +MA +S++N +ENG S S+ + +++S D Sbjct: 1 MIEVGRRLKALRESIGFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 +I+ + K L+ + Q + L + E Sbjct: 61 YIFARTDKPQGETYHFKPKA---APEREELRRFIEMCFDPQSPMNEKLKETLFRMMEGES 117 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RLK++R+ G SQ++ + LG S+++ YE G++ P ++ R+ LD Sbjct: 1 MIEVGRRLKALRESIGFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLD 60 Query: 171 WIY 173 +I+ Sbjct: 61 YIF 63 >gi|251798962|ref|YP_003013693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546588|gb|ACT03607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 122 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 31/81 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI +R+ TQ++ A +A++ +E + Y+++ D++ Sbjct: 2 NIGNRIAGLREERKWTQEQTASKLGISRAALSHYEKNRREPDTETLAKFADLYQVTIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + + +D Sbjct: 62 VGRTTNTQAALSEDVRNFVDH 82 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+ +R+++ +Q + LG+ + LS+YE+ R P+ + K + + +D+ Sbjct: 1 MNIGNRIAGLREERKWTQEQTASKLGISRAALSHYEKNRREPDTETLAKFADLYQVTIDY 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B] gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B] Length = 244 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 14/117 (11%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +GTRI+++RKA T +++A ++V+ +E+G + L E + ++ Sbjct: 5 QHIGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVEY 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 + +G+ D + R + +R + ++ S ++ + Sbjct: 65 LLNGDTNDAMSFADSAASR----------RRLRGGT----KQSASIVDNSESNITEW 107 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK KG++ + + G+ +++S +E GR+ P+ + + ++++ GD Sbjct: 11 IRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVEYLLNGDT 70 Query: 178 VIV------PKSIKRAKGNQSSKKSKKDKKSSN 204 S +R +G S D SN Sbjct: 71 NDAMSFADSAASRRRLRGGTKQSASIVDNSESN 103 >gi|325962046|ref|YP_004239952.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468133|gb|ADX71818.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 504 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 2/109 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK T +++ S ++L ENG + +L + +S D + Sbjct: 36 LGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENGKREPKLGLLQHLASALNVSIDQLL 95 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK--SIRKDKGMSQIEFGKLLGM 138 E RR +R + L IR + +G+ Sbjct: 96 GAEPPSRRAALEIELERYQRSPLYETLNLPKIRISSRLPLDVLEAQVGL 144 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 LD ++G R++ +RK G++ + +G S LS E G+ P++ + + Sbjct: 31 LDVISLGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENGKREPKLGLLQHLASALNVS 90 Query: 169 LDWIYFGD 176 +D + + Sbjct: 91 IDQLLGAE 98 >gi|311111466|ref|ZP_07712863.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066620|gb|EFQ46960.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] Length = 116 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+++R ++ +Q E++ + + + +ENG S L +++S D++ Sbjct: 2 IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 G + V +K L A+ L ++ Sbjct: 62 -GSDKTSEPKSVDLEKTLSFLAMVDALCQMKTW 93 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 36/76 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R++ +R +SQ E KLL + T++ +E G+ P K+ + D++ Sbjct: 1 MIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYL 60 Query: 173 YFGDEVIVPKSIKRAK 188 D+ PKS+ K Sbjct: 61 LGSDKTSEPKSVDLEK 76 >gi|317132933|ref|YP_004092247.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] gi|315470912|gb|ADU27516.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] Length = 262 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R++ +RK +Q+++A AV+ +E G + + L + IS D + Sbjct: 2 EFSERLQALRKQAGLSQEKLAEACGVSRQAVSKWEAGQSQPDMDKLVLLSKLFGISLDEL 61 Query: 91 YDGEVI 96 G+ Sbjct: 62 VKGKAD 67 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 35/74 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL+++RK G+SQ + + G+ +S +E G++ P++ + ++ LD Sbjct: 1 MEFSERLQALRKQAGLSQEKLAEACGVSRQAVSKWEAGQSQPDMDKLVLLSKLFGISLDE 60 Query: 172 IYFGDEVIVPKSIK 185 + G P+ + Sbjct: 61 LVKGKADAGPREFR 74 >gi|323339906|ref|ZP_08080175.1| DNA-binding protein [Lactobacillus ruminis ATCC 25644] gi|323092779|gb|EFZ35382.1| DNA-binding protein [Lactobacillus ruminis ATCC 25644] Length = 179 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWK------DVGTRIKDIRKANNKTQKEMAIGANQLES 59 F + + + + + ++ ++G R+KD R + TQ+++A + Sbjct: 15 FTSKKQRLSRNFDGLKKTTVAEFGMKGGKFLNIGKRLKDARIESGYTQEQVAEQLDVSRQ 74 Query: 60 AVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 ++ +ENG I + L + Y++S D + G+ + + + Sbjct: 75 TISSWENGRTFPDIVSVVSLSDIYDVSLDVLIKGDEKMLEHLEESTN 121 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 42/85 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG RLK R + G +Q + + L + T+S++E GRT P+I + + LD Sbjct: 44 FLNIGKRLKDARIESGYTQEQVAEQLDVSRQTISSWENGRTFPDIVSVVSLSDIYDVSLD 103 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + GDE ++ + +S+KK Sbjct: 104 VLIKGDEKMLEHLEESTNIVKSNKK 128 >gi|218282117|ref|ZP_03488416.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989] gi|218216910|gb|EEC90448.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989] Length = 334 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 35/74 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I + RK N TQ+++A +V+ +E+ ++ + L + +E+S D++ Sbjct: 18 LADKIIEERKKNGWTQEDLAQKLGVSRQSVSKWESAGAIPDLKKIIQLADLFEVSTDYLL 77 Query: 92 DGEVIDRRYEDVTN 105 E+ + + Sbjct: 78 KDEIEKENTDISCD 91 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + RK G +Q + + LG+ ++S +E IP++K ++ + + D++ + Sbjct: 22 IIEERKKNGWTQEDLAQKLGVSRQSVSKWESAGAIPDLKKIIQLADLFEVSTDYLLKDEI 81 Query: 178 VIVPKSI 184 I Sbjct: 82 EKENTDI 88 >gi|210617044|ref|ZP_03291379.1| hypothetical protein CLONEX_03601 [Clostridium nexile DSM 1787] gi|210149567|gb|EEA80576.1| hypothetical protein CLONEX_03601 [Clostridium nexile DSM 1787] Length = 333 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 51/115 (44%), Gaps = 12/115 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK N +Q+E+A + +V+ +E+ + L L + +S D++ Sbjct: 3 LAEKIMELRKKNGWSQEELAEKIHVSRQSVSKWESSASIPDLSKILLLSQVFGVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--------KSIRKDKGMSQIEFGKLLGM 138 ++ + + ++ ++ ++ A G + K KD+ K +G+ Sbjct: 63 RDDIEETQKAEIFVEETVEKAAGGETIYKISLEESKEYIKDR----RCAAKRIGV 113 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 7/99 (7%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ +RK G SQ E + + + ++S +E +IP++ + QV D+ Sbjct: 1 MILAEKIMELRKKNGWSQEELAEKIHVSRQSVSKWESSASIPDLSKILLLSQVFGVSTDY 60 Query: 172 IYFGD-------EVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + D E+ V +++++A G ++ K ++ Sbjct: 61 LLRDDIEETQKAEIFVEETVEKAAGGETIYKISLEESKE 99 >gi|331090621|ref|ZP_08339472.1| hypothetical protein HMPREF9477_00115 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401061|gb|EGG80656.1| hypothetical protein HMPREF9477_00115 [Lachnospiraceae bacterium 2_1_46FAA] Length = 160 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G +IK IR+ TQ++ A+ N AV+ +EN I + + + ++IS D++ Sbjct: 2 DFGEQIKSIRQKEKLTQEQFAMKLNVSRQAVSNWENNKNLPDIGMLILMSDVFQISLDYL 61 Query: 91 YDGEVIDRR 99 GE Sbjct: 62 IKGENEMNN 70 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 45/88 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++KSIR+ + ++Q +F L + +SN+E + +P+I + V + LD+ Sbjct: 1 MDFGEQIKSIRQKEKLTQEQFAMKLNVSRQAVSNWENNKNLPDIGMLILMSDVFQISLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + G+ + + K K +K+++ + Sbjct: 61 LIKGENEMNNMTEKVIKDGSETKRARYN 88 >gi|297617997|ref|YP_003703156.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145834|gb|ADI02591.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 216 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 32/79 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 VG+RIK +R+ TQ+++ N ++A++ +E G L + +S D Sbjct: 1 MTSVGSRIKQLREERGLTQEQLGKILNVQKAAISKYEKGHTLPDSEALKKLAKFFNVSVD 60 Query: 89 WIYDGEVIDRRYEDVTNKK 107 ++ ++ Sbjct: 61 YLLCLTDTREPFDTKVTAN 79 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 49/94 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++G+R+K +R+++G++Q + GK+L + + +S YE+G T+P+ + +K+ + +D Sbjct: 1 MTSVGSRIKQLREERGLTQEQLGKILNVQKAAISKYEKGHTLPDSEALKKLAKFFNVSVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 ++ + P K K + +N Sbjct: 61 YLLCLTDTREPFDTKVTANVSYESAEKSSRGITN 94 >gi|225017440|ref|ZP_03706632.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] gi|224949850|gb|EEG31059.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 41/95 (43%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++R++ + +I+ RK +Q+++A A+ +ENG+ S + + L + Sbjct: 2 KVRRFTMKLPEKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECF 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 ++S D++ + + + K + L Sbjct: 62 KVSTDYLLKDNITEPTPPQESALKGNKRMSWRTWL 96 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +++ RK G+SQ + + +G+ ++ +E G PE++ + + K D+ Sbjct: 8 MKLPEKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDY 67 Query: 172 IYFGD-EVIVPKSIKRAKGNQ 191 + + P KGN+ Sbjct: 68 LLKDNITEPTPPQESALKGNK 88 >gi|50122315|ref|YP_051482.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] gi|49612841|emb|CAG76291.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] Length = 133 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 6/130 (4%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + L S + I+ E R ++ +G RI +RK TQ E+A + V +E Sbjct: 1 MAVLLHSTSVTAMAISNEERDFFMALGERITTLRKERGITQAELAEKLGVSQQTVQAWEA 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 G + + + +S + ++ R + K L Sbjct: 61 GRRRIKVSSLPSVAQIFSVSLEEVFGEAPEPARRKRGPAPKWQQQMEEIDSLPKA----- 115 Query: 127 MSQIEFGKLL 136 Q ++L Sbjct: 116 -KQKMISEML 124 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 ++N++R A+G R+ ++RK++G++Q E + LG+ T+ +E GR Sbjct: 6 HSTSVTAMAISNEERDFFMALGERITTLRKERGITQAELAEKLGVSQQTVQAWEAGRRRI 65 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ + Q+ L+ ++ P+ +R +G + + ++ S P Sbjct: 66 KVSSLPSVAQIFSVSLEEVFGE----APEPARRKRGPAPKWQQQMEEIDSLP 113 >gi|291541388|emb|CBL14498.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 280 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ RK N +Q+E+A AV+ +E S + L + Y +S D + G Sbjct: 7 NRLLQYRKKMNLSQEELAAKIGVSRQAVSKWERAEASPDTDNLILLADIYGVSLDELLKG 66 Query: 94 EV 95 E Sbjct: 67 EK 68 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 2/96 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RL RK +SQ E +G+ +S +E+ P+ + + LD Sbjct: 2 NIETANRLLQYRKKMNLSQEELAAKIGVSRQAVSKWERAEASPDTDNLILLADIYGVSLD 61 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD--KKSSN 204 + G++ ++ N + D K SN Sbjct: 62 ELLKGEKETESETQSEEPENNTENNPDSDTTYKKSN 97 >gi|302334962|ref|YP_003800169.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301318802|gb|ADK67289.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 198 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R++ +R+ TQ E+A ++ +E G + + +++S D + Sbjct: 2 EIGQRMRALRQGAGLTQDELAERLYVSRQTISNWETGKSYPDVESVSLACDLFDVSADAL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++++ +R Sbjct: 62 LKGDIMEMGKRVSEEDRR 79 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 40/80 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R++++R+ G++Q E + L + T+SN+E G++ P+++ + D Sbjct: 1 MEIGQRMRALRQGAGLTQDELAERLYVSRQTISNWETGKSYPDVESVSLACDLFDVSADA 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + GD + + K + + Sbjct: 61 LLKGDIMEMGKRVSEEDRRR 80 >gi|228943343|ref|ZP_04105795.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228816323|gb|EEM62496.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 157 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 40/96 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 IR+ +G RIK +RK N TQK++A + + +E+ L + + Sbjct: 10 IREVNNMIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFS 69 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 +S D++ V D E VT K D +K Sbjct: 70 VSADYLLGRSVTDEPNEQVTPKDEKDIAKRMEEIKK 105 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+RK + ++Q + + +G+ + YE P K+ D++ Sbjct: 21 IKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYLLGRSV 80 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSS 203 P K + K ++ K Sbjct: 81 TDEPNEQVTPKDEKDIAKRMEEIKKD 106 >gi|160916303|ref|ZP_02078510.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991] gi|158432027|gb|EDP10316.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991] Length = 258 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I +RK +Q+ +A A++ +EN L L N +E+S D++ Sbjct: 3 LGEKIFKLRKEKGLSQEALAEQVGTTRQAISKWENDQGFPETEKLLRLSNIFEVSTDYLL 62 Query: 92 DGEVI 96 E Sbjct: 63 KDEKT 67 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 35/72 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ +RK+KG+SQ + +G +S +E + PE + ++ + + D+ Sbjct: 1 MSLGEKIFKLRKEKGLSQEALAEQVGTTRQAISKWENDQGFPETEKLLRLSNIFEVSTDY 60 Query: 172 IYFGDEVIVPKS 183 + ++ + Sbjct: 61 LLKDEKTVKDSE 72 >gi|312126603|ref|YP_003991477.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776622|gb|ADQ06108.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 119 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 27/138 (19%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+++R +Q+E+ N + +ENG + L + + ++ D++ Sbjct: 3 NRIRELRLERGLSQEELGKVLNVSGRTIGHYENGSREPTPEALNKLADFFGVTIDYLLCR 62 Query: 94 EVIDRRYEDVTNKK-----RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + + T K ++ +K + Q E Sbjct: 63 TDVRSTEKQDTKDKLQTPADVNKEPASDDIKELLLLAQNLQEE----------------- 105 Query: 149 GRTIPEIKPARKIKQVTK 166 ++K ++I + Sbjct: 106 -----DLKLLKQIAKRLN 118 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 39/86 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R ++G+SQ E GK+L + T+ +YE G P + K+ +D++ Sbjct: 1 MKNRIRELRLERGLSQEELGKVLNVSGRTIGHYENGSREPTPEALNKLADFFGVTIDYLL 60 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKD 199 +V + Q+ K+ Sbjct: 61 CRTDVRSTEKQDTKDKLQTPADVNKE 86 >gi|328956484|ref|YP_004373870.1| conserved hypothetical protein; possible transcriptional regulator A [Carnobacterium sp. 17-4] gi|328672808|gb|AEB28854.1| conserved hypothetical protein; possible transcriptional regulator A [Carnobacterium sp. 17-4] Length = 172 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 34/87 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R +Q ++A + +++ +ENG + L Y++S D + Sbjct: 3 LGERLKQSRMNKRYSQGDVAKHLHISRQSISKWENGNSYPDLDNLAKLSTYYDVSIDELL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + + + + Sbjct: 63 KEDQKLKKEIEENKGETENNVHKLVFI 89 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G RLK R +K SQ + K L + ++S +E G + P++ K+ +D Sbjct: 1 MVLGERLKQSRMNKRYSQGDVAKHLHISRQSISKWENGNSYPDLDNLAKLSTYYDVSIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + D+ + K I+ KG + K Sbjct: 61 LLKEDQKL-KKEIEENKGETENNVHK 85 >gi|326203409|ref|ZP_08193273.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325986229|gb|EGD47061.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 190 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 8/157 (5%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLF--ENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ + + N ++A SA++ E G SI LR + +S D++ Sbjct: 4 RRLALLMEKFNLKPADLANELGVTPSAISKLLAEEGRY-PSIENLKKLRRIFNVSIDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 ++ D +D I + +K +R+ +SQ EF + + + E G++ Sbjct: 63 GCDIEDINDML----NTVDVTYIASAIKELRRTMNLSQKEFALYNDLKVKEIKDIEDGKS 118 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAK 188 + +I +I ++ + + ++ + ++ K Sbjct: 119 V-DINTINQIANLSGVSIYKLLGQNQPYSEDNTEKNK 154 Score = 43.0 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + IK++R+ N +QKE A+ + + E+G S I + N +S + Sbjct: 81 IASAIKELRRTMNLSQKEFALYNDLKVKEIKDIEDGK-SVDINTINQIANLSGVSI-YKL 138 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 G+ ++ K + A Sbjct: 139 LGQNQPYSEDNTEKNKLIKFAAN 161 >gi|116496181|ref|YP_807915.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|239630630|ref|ZP_04673661.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067783|ref|YP_003789806.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116106331|gb|ABJ71473.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|239526913|gb|EEQ65914.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440190|gb|ADK19956.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 185 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R+K +RKA TQ ++A V+ +E G ++ L + Y+++ D + Sbjct: 6 LGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVDDLL 65 Query: 92 DGEVIDRRYED 102 + + + Sbjct: 66 HQQSVPCADDQ 76 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + ++G+RLK +RK +GM+Q + L + T+S++E GR P+++ ++ + Sbjct: 1 MSDLSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLT 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDDLL 65 >gi|71901612|ref|ZP_00683692.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] gi|71728622|gb|EAO30773.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] Length = 406 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 73/194 (37%), Gaps = 15/194 (7%) Query: 8 ETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE-- 65 E + K +++ + ++ E + ++ ++ +RK++ TQ+++A+ +S + +E Sbjct: 55 EVNTKRVRKISRVVNNEGMTFSEN----LRRLRKSHGMTQEQLALTCGWGQSRIANYESR 110 Query: 66 -NGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + S + ++ + V E + + RL+ + Sbjct: 111 GSSAREPSFNDIEIISRVLGVTKAELLGETVPGVVSETIQAP-------LAERLRIAMIE 163 Query: 125 KGMSQIEFGKLLGMPNSTLSNYEQGRTIP-EIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 GM+Q + +G+ ++ + + + K + W+ G ++ + Sbjct: 164 AGMTQKQLADAVGVKPPSIHGWLSSKAKFLRGENLLKAAKALNVSEKWLATGTGLMRAVT 223 Query: 184 IKRAKGNQSSKKSK 197 A+ ++S+ Sbjct: 224 AIPAQETPLRQESQ 237 >gi|257413316|ref|ZP_05591602.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203934|gb|EEV02219.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 187 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 34/90 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + ++G +I +RK + TQ+++A N ++ +E+ S + + + + +S Sbjct: 13 HKMEIGNKINQLRKLSGMTQEQLAEKLNVSRQTISKWESDSTSPDLESIVKISRIFHVSL 72 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 D + + D I Sbjct: 73 DDLLKEGEAGVANKTDEQITLEDLMKINLH 102 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 IG ++ +RK GM+Q + + L + T+S +E T P+++ KI ++ L Sbjct: 13 HKMEIGNKINQLRKLSGMTQEQLAEKLNVSRQTISKWESDSTSPDLESIVKISRIFHVSL 72 Query: 170 DWIYF-GDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 D + G+ + K+ ++ K + ++K + Sbjct: 73 DDLLKEGEAGVANKTDEQITLEDLMKINLHNRKMT 107 >gi|304385876|ref|ZP_07368220.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328380|gb|EFL95602.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 196 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 39/87 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ + TQ E+A ++ +E G +I L Y +S D + Sbjct: 11 IGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAELYGVSIDELT 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +++ E+ K+++ A+ L Sbjct: 71 NTSLLNPVQEEGDPMKQVNWMALFGIL 97 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 38/68 (55%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + +D +IG L+ +R+D+ ++Q E L + T+S +EQG+TIP I + + ++ Sbjct: 2 KPEGVDQMSIGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAEL 61 Query: 165 TKKHLDWI 172 +D + Sbjct: 62 YGVSIDEL 69 >gi|270289873|ref|ZP_06196099.1| XRE family transcriptional regulator [Pediococcus acidilactici 7_4] gi|270281410|gb|EFA27242.1| XRE family transcriptional regulator [Pediococcus acidilactici 7_4] Length = 188 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 39/87 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ + TQ E+A ++ +E G +I L Y +S D + Sbjct: 3 IGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAELYGVSIDELT 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +++ E+ K+++ A+ L Sbjct: 63 NTSLLNPVQEEGDPMKQVNWMALFGIL 89 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ +R+D+ ++Q E L + T+S +EQG+TIP I + + ++ +D + Sbjct: 7 LQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAELYGVSIDEL 61 >gi|125717272|ref|YP_001034405.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497189|gb|ABN43855.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 205 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + +E++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGMEPVVQKEEEQSIKH 79 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGMEPVVQKEEEQS 76 >gi|313898355|ref|ZP_07831892.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956737|gb|EFR38368.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 268 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 3/104 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G +I RK TQ+E+A + ++ +E G+ I L L E I Sbjct: 3 QKEIGMQISAARKKLKYTQRELAEKLGVSDKTISKWERGVGYPDISLLLPLCRELGIEVS 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + E D + N+K L A A LK +++++ Q Sbjct: 63 QLLGDEETDTQ--KQGNEKNLKNLADYAVLK-VKENRERIQRWI 103 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG ++ + RK +Q E + LG+ + T+S +E+G P+I + + Sbjct: 1 MQQKEIGMQISAARKKLKYTQRELAEKLGVSDKTISKWERGVGYPDISLLLPLCRELGIE 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + +E K +GN+ + K+ D Sbjct: 61 VSQLLGDEETDTQK-----QGNEKNLKNLADY 87 >gi|227894470|ref|ZP_04012275.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM 16047] gi|227863629|gb|EEJ71050.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM 16047] Length = 325 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I D+RK NN +Q+++A N AV+ +E+ I + L + ++ D++ Sbjct: 3 LGQKIADLRKKNNLSQEDLAEEMNVSRQAVSKWESDQSIPDIEKIVNLSEFFGVTTDYLL 62 Query: 92 DGEVIDRRYEDVT 104 ++ Sbjct: 63 KNGTPSFEFKSED 75 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 30/63 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +RK +SQ + + + + +S +E ++IP+I+ + + D+ Sbjct: 1 MRLGQKIADLRKKNNLSQEDLAEEMNVSRQAVSKWESDQSIPDIEKIVNLSEFFGVTTDY 60 Query: 172 IYF 174 + Sbjct: 61 LLK 63 >gi|307710044|ref|ZP_07646489.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619229|gb|EFN98360.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 260 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 34/92 (36%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + Q +G +IK R AN TQ+E+ ++A+ +E G S L N + Sbjct: 2 DKEQIAIVIGEKIKQYRLANGWTQQELGAKIGISKNAIGNYEKGFRSPKKNTMFDLANAF 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 +S D ++ D + D Sbjct: 62 NVSIDDLFPPIQKDTPPTTSPIQTIYDQLEPP 93 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K IG ++K R G +Q E G +G+ + + NYE+G P+ + Sbjct: 2 DKEQIAIVIGEKIKQYRLANGWTQQELGAKIGISKNAIGNYEKGFRSPKKNTMFDLANAF 61 Query: 166 KKHLDWIY 173 +D ++ Sbjct: 62 NVSIDDLF 69 >gi|159043770|ref|YP_001532564.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911530|gb|ABV92963.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 468 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 47/127 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ +TQ EMA + VNL EN S S++ + L Y + + + Sbjct: 6 VGPRLRALRRERKQTQAEMAQALGVSPAYVNLLENNQRSLSVQMLMALTETYNVDWRDLV 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + + + + L +R + +LL + + S E+ Sbjct: 66 KDDAATQLTDLRHAMQDPVFTDAAPDLTELRAALDHAPKLVSRLLQLHQAHRSTLEKVMR 125 Query: 152 IPEIKPA 158 + Sbjct: 126 MGSSGVL 132 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 26/59 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+++R+++ +Q E + LG+ + ++ E + ++ + + + D Sbjct: 10 LRALRRERKQTQAEMAQALGVSPAYVNLLENNQRSLSVQMLMALTETYNVDWRDLVKDD 68 >gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] gi|224525062|gb|EEF94167.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] Length = 378 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 3/97 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G I + RK TQ+++ ++ +ENG + + L +IS + Sbjct: 4 KKIGKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNYMPDLSLLIPLSETLDISLNE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLD---PYAIGARLKSIRK 123 + +G+ I T +K L Y+ ++ RK Sbjct: 64 LLNGKYITEDKIMETTEKSLKNTINYSKNMLIQEKRK 100 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 42/85 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + RK KG++Q + G +LG+ N T+S +E G +P++ + + Sbjct: 1 MDTKKIGKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNYMPDLSLLIPLSETLDIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSS 193 L+ + G + K ++ + + + Sbjct: 61 LNELLNGKYITEDKIMETTEKSLKN 85 >gi|160894107|ref|ZP_02074885.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50] gi|156864140|gb|EDO57571.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50] Length = 313 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +K RK N TQ+++A V+ +E G+ + + L Y++ Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQLAEYYDVEMRE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYA-IGARLKS 120 + DGE + + K+ LD A +K Sbjct: 64 LLDGE--RSQTMNKEMKETLDKVAVYEEWVKQ 93 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IGA LK RK+K ++Q + + G+ T+S +E G +P++ ++ + Sbjct: 1 MDTKKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQLAEYYDVE 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 MRELLDGE 68 >gi|257867254|ref|ZP_05646907.1| predicted protein [Enterococcus casseliflavus EC30] gi|257873587|ref|ZP_05653240.1| predicted protein [Enterococcus casseliflavus EC10] gi|257801310|gb|EEV30240.1| predicted protein [Enterococcus casseliflavus EC30] gi|257807751|gb|EEV36573.1| predicted protein [Enterococcus casseliflavus EC10] Length = 263 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 41/88 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G IK+ R N TQ+++A ++ +ENG + + L + +E++ D++ Sbjct: 2 DIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSSYFELTLDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++T ++ + A L Sbjct: 62 LKEDQQMVQELNLTTHRKRIGLVLIAIL 89 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 34/71 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K R + ++Q + + + +S +E G++ P++ K+ + LD+ Sbjct: 1 MDIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSSYFELTLDY 60 Query: 172 IYFGDEVIVPK 182 + D+ +V + Sbjct: 61 LLKEDQQMVQE 71 >gi|297190678|ref|ZP_06908076.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719901|gb|EDY63809.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 202 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + VG R++ +R+ T ++A ES ++ E+G S+ L L Y++ Sbjct: 7 DEVLGAVGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLPLARIYDV 66 Query: 86 SFDWIY 91 D + Sbjct: 67 PLDDLV 72 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+D+G++ + G+ STLS E G+ P ++ + ++ LD + Sbjct: 12 AVGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLPLARIYDVPLDDL 71 Query: 173 Y----FGDEVIVPKSIKR 186 GD I K I+R Sbjct: 72 VGAPRTGDPRIHLKPIRR 89 >gi|116629237|ref|YP_814409.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116629297|ref|YP_814469.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116094819|gb|ABJ59971.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|116094879|gb|ABJ60031.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] Length = 115 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+++R ++ +Q E++ + + + +ENG S L +++S D++ Sbjct: 5 IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYLL 64 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K + Sbjct: 65 GSDKTSEPKSVDLEKDPV 82 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 36/76 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R++ +R +SQ E KLL + T++ +E G+ P K+ + D++ Sbjct: 4 MIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYL 63 Query: 173 YFGDEVIVPKSIKRAK 188 D+ PKS+ K Sbjct: 64 LGSDKTSEPKSVDLEK 79 >gi|329668140|gb|AEB94088.1| hypothetical protein LJP_1772 [Lactobacillus johnsonii DPC 6026] Length = 161 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK +RK NN TQ+EMA N A++ +EN + + + +S D + Sbjct: 2 EFNEQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAETFGVSLDEL 61 Query: 91 YDGEVIDRRYEDV 103 G+ + E Sbjct: 62 ILGDKKMNKIEQT 74 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 38/86 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K +RK+ ++Q E K L + +SN+E R +P+ + I + LD Sbjct: 1 MEFNEQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAETFGVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD+ + + S+ +K Sbjct: 61 LILGDKKMNKIEQTLINDGKRSRAAK 86 >gi|289422894|ref|ZP_06424724.1| transcriptional regulator, xre family [Peptostreptococcus anaerobius 653-L] gi|289156699|gb|EFD05334.1| transcriptional regulator, xre family [Peptostreptococcus anaerobius 653-L] Length = 212 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +IK IR N TQ++MA N AV+ +EN I + + + ++ D + Sbjct: 2 NFGEQIKKIRAEKNLTQQKMADMLNVSRQAVSNWENDKNLPDIEMIINMSRAFNMTLDEL 61 Query: 91 -YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + G+ ++ E + N + + Sbjct: 62 VFGGKDMNNMTEKLINDGSENRRKNMNLI 90 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 41/88 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++K IR +K ++Q + +L + +SN+E + +P+I+ + + LD Sbjct: 1 MNFGEQIKKIRAEKNLTQQKMADMLNVSRQAVSNWENDKNLPDIEMIINMSRAFNMTLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + FG + + + K +++ + Sbjct: 61 LVFGGKDMNNMTEKLINDGSENRRKNMN 88 >gi|251811388|ref|ZP_04825861.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|251805137|gb|EES57794.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|319399894|gb|EFV88140.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] gi|320142644|gb|EFW34450.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 108 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IKD+RK +N TQ+E+A N ++ +E G+ + + L + +S D++ Sbjct: 2 ISKQIKDLRKQHNYTQEELAEKLNTSRQTISKWEQGISEPDLIMLMQLSQLFSVSTDYLI 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 G + ++ + + + Sbjct: 62 TGSDNIIKKDNKSYYEMNFWAFMSE 86 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 36/74 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I ++K +RK +Q E + L T+S +EQG + P++ ++ Q+ D++ Sbjct: 1 MISKQIKDLRKQHNYTQEELAEKLNTSRQTISKWEQGISEPDLIMLMQLSQLFSVSTDYL 60 Query: 173 YFGDEVIVPKSIKR 186 G + I+ K K Sbjct: 61 ITGSDNIIKKDNKS 74 >gi|253583791|ref|ZP_04860989.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251834363|gb|EES62926.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 168 Score = 82.3 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 41/84 (48%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +I+ +RK N +Q+++A + +V+ +E+G I + L N +E++ D++ Sbjct: 6 KIQQLRKQNGMSQEKLAQLLGVSKQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLKDV 65 Query: 95 VIDRRYEDVTNKKRLDPYAIGARL 118 ++ + + +K + + L Sbjct: 66 SEEKCIDILRKEKEKEVLSHHTSL 89 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK GMSQ + +LLG+ ++S +E G+++PEI ++ + + D++ + Sbjct: 7 IQQLRKQNGMSQEKLAQLLGVSKQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLL--KD 64 Query: 178 VIVPKSIKRAKGNQSSK 194 V K I + + + Sbjct: 65 VSEEKCIDILRKEKEKE 81 >gi|187778336|ref|ZP_02994809.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] gi|187771961|gb|EDU35763.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] Length = 111 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 38/92 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++R+ TQ+++ N + AV +E G +I + + + + +S D++ Sbjct: 20 FGDRLKELREEKGMTQEQLGKLLNITKQAVYSYEKGDNEPTIDALVKIADIFNVSLDYLL 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 K + + ++ +K Sbjct: 80 GRTKERYNLNLKDKKNKELLLDLIKVIEKHKK 111 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R++KGM+Q + GKLL + + +YE+G P I KI + LD++ + Sbjct: 24 LKELREEKGMTQEQLGKLLNITKQAVYSYEKGDNEPTIDALVKIADIFNVSLDYLLGRTK 83 Query: 178 VIVPKSIKRAKGNQ 191 ++K K + Sbjct: 84 ERYNLNLKDKKNKE 97 >gi|242239429|ref|YP_002987610.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242131486|gb|ACS85788.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 131 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 6/121 (4%) Query: 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 I+ E + + ++G RI +RK TQ ++A N + AV +E+G I Sbjct: 1 MAASISSEEQTFMTELGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRRIQISAL 60 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + + +S D + + + + +L R Q ++L Sbjct: 61 PAVARQLSVSLDALLGDSHTPPPRKRGPASRLEQQIQMIGQLPRSR------QKLVSEML 114 Query: 137 G 137 Sbjct: 115 D 115 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 ++++++ +G R+ ++RKD G++Q++ + L + + ++E GR +I + Sbjct: 4 SISSEEQTFMTELGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRRIQISALPAV 63 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIK 185 + LD + GD P + Sbjct: 64 ARQLSVSLDALL-GDSHTPPPRKR 86 >gi|319646361|ref|ZP_08000591.1| YqaE protein [Bacillus sp. BT1B_CT2] gi|317392111|gb|EFV72908.1| YqaE protein [Bacillus sp. BT1B_CT2] Length = 120 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI +RK +Q E+A + +E G + + + +E+S D++ Sbjct: 2 LGKRIAALRKEKGLSQYELADRLGFSRGKLANYEQGTREPDYETLIKIADFFEVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + + ++ + L Sbjct: 62 RGVDPKVQDKIFEDEAKRILNDPKTFL 88 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 39/79 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+ ++RK+KG+SQ E LG L+NYEQG P+ + KI + D++ Sbjct: 1 MLGKRIAALRKEKGLSQYELADRLGFSRGKLANYEQGTREPDYETLIKIADFFEVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 G + V I + + Sbjct: 61 LRGVDPKVQDKIFEDEAKR 79 >gi|300856997|ref|YP_003781981.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437112|gb|ADK16879.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 120 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 43/97 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +RK +Q+++A A++ +E+ + I + L Y +S D++ Sbjct: 3 ISERLQKLRKHEGYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 GE + ++ +K+ + G + G+S Sbjct: 63 KGEEQISKPIEINSKENKENIKSGKTFNKLLFIAGIS 99 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 44/87 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I RL+ +RK +G SQ + + LG+ +S +E + P+I K+ ++ D+ Sbjct: 1 MSISERLQKLRKHEGYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + G+E I +K N+ + KS K Sbjct: 61 LLKGEEQISKPIEINSKENKENIKSGK 87 >gi|257866249|ref|ZP_05645902.1| DNA binding protein [Enterococcus casseliflavus EC30] gi|257873237|ref|ZP_05652890.1| DNA binding protein [Enterococcus casseliflavus EC10] gi|257875884|ref|ZP_05655537.1| DNA binding protein [Enterococcus casseliflavus EC20] gi|257800207|gb|EEV29235.1| DNA binding protein [Enterococcus casseliflavus EC30] gi|257807401|gb|EEV36223.1| DNA binding protein [Enterococcus casseliflavus EC10] gi|257810050|gb|EEV38870.1| DNA binding protein [Enterococcus casseliflavus EC20] Length = 172 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 38/89 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K R+++ +Q +A +++ +ENG I + L + Y++S D + Sbjct: 3 LAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDELL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + + N++ D + L+ Sbjct: 63 RENEALKERIETNNQEINDKKEKLSLLQR 91 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +LKS R+ G+SQ + L + ++S +E GR P+I+ + + + +D Sbjct: 1 MALAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + +E + + I+ + KK K Sbjct: 61 LLRENEAL-KERIETNNQEINDKKEK 85 >gi|222530625|ref|YP_002574507.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457472|gb|ACM61734.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 118 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 38/94 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +K +G R++++RK TQ+++A + ++ +ENG S+ L L Y Sbjct: 2 KEEVYKKIGKRLQELRKQRGFTQEQVAKYLGITQEQLSHYENGKREVSVDILLQLARLYG 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 ++++ E + + + Sbjct: 62 CDYNYLLGEEQNTDEQITMNFRADEISDEDLEVI 95 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 41/90 (45%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K IG RL+ +RK +G +Q + K LG+ LS+YE G+ + ++ ++ Sbjct: 1 MKEEVYKKIGKRLQELRKQRGFTQEQVAKYLGITQEQLSHYENGKREVSVDILLQLARLY 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 +++ ++ + + ++ S + Sbjct: 61 GCDYNYLLGEEQNTDEQITMNFRADEISDE 90 >gi|261366797|ref|ZP_05979680.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571333|gb|EFB76868.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 117 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 3/120 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +VG R+K +R++ +Q +MA +S++N +ENG S S+ + +++S D Sbjct: 1 MIEVGKRLKALRESIGFSQVKMAQALGSTQSSINRYENGQSSPSVELFRRYADYFDVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 +I+ + K L+ + Q + L + E Sbjct: 61 YIFARTDKPQGETYHFKPKA---APEREELRQFIEMCFDPQSPMNEKLKETLFRMMEGES 117 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RLK++R+ G SQ++ + LG S+++ YE G++ P ++ R+ LD Sbjct: 1 MIEVGKRLKALRESIGFSQVKMAQALGSTQSSINRYENGQSSPSVELFRRYADYFDVSLD 60 Query: 171 WIY 173 +I+ Sbjct: 61 YIF 63 >gi|253579239|ref|ZP_04856509.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251849337|gb|EES77297.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 313 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +K RK N TQ+++A V+ +E G+ + + L Y++ Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQLAEYYDVEMRE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYA-IGARLKS 120 + DGE + + K+ LD A +K Sbjct: 64 LLDGE--RSQTMNKEMKETLDKVAVYEEWVKQ 93 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IGA LK RK+K ++Q + + G+ T+S +E G +P++ ++ + Sbjct: 1 MDTKKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQLAEYYDVE 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 MRELLDGE 68 >gi|261369061|ref|ZP_05981944.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282568797|gb|EFB74332.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 90 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R+K +R++ +Q +MA +S++N +ENG S S+ + +++S D+I Sbjct: 3 EVGKRLKALRESIGFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLDYI 62 Query: 91 YDGEVIDRRYED 102 + + Sbjct: 63 FARTDKPQGETY 74 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RLK++R+ G SQ++ + LG S+++ YE G++ P ++ R+ LD Sbjct: 1 MIEVGKRLKALRESIGFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLD 60 Query: 171 WIY 173 +I+ Sbjct: 61 YIF 63 >gi|254389389|ref|ZP_05004617.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294817070|ref|ZP_06775712.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326445868|ref|ZP_08220602.1| putative XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703104|gb|EDY48916.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294321885|gb|EFG04020.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 246 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + VG R++ +R+ T ++A ES ++ ENG ++ L L Y + Sbjct: 7 DEVLDAVGPRLRALRRDRGITLADLATTTGVSESTLSRLENGQRRPTLELLLPLARTYNV 66 Query: 86 SFDWIY 91 D + Sbjct: 67 PLDDLV 72 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+D+G++ + G+ STLS E G+ P ++ + + LD + Sbjct: 12 AVGPRLRALRRDRGITLADLATTTGVSESTLSRLENGQRRPTLELLLPLARTYNVPLDDL 71 Query: 173 Y----FGDEVIVPKSIKR 186 GD + K + R Sbjct: 72 VGAPRTGDPRVHLKPVSR 89 >gi|319940112|ref|ZP_08014466.1| hypothetical protein HMPREF9459_01456 [Streptococcus anginosus 1_2_62CV] gi|319810826|gb|EFW07153.1| hypothetical protein HMPREF9459_01456 [Streptococcus anginosus 1_2_62CV] Length = 169 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI ++RK +Q ++A N +++ +E+ I + L ++++ D++ Sbjct: 2 QINKRIFELRKERGWSQDQLAEKVNVSRQSISKWESAQALPEIEKVIELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 + ++ Sbjct: 62 LLDQADEKEARPKWTTSE 79 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 34/64 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+ +RK++G SQ + + + + ++S +E + +PEI+ ++ ++ + D+ Sbjct: 1 MQINKRIFELRKERGWSQDQLAEKVNVSRQSISKWESAQALPEIEKVIELSKIFQVTTDY 60 Query: 172 IYFG 175 + Sbjct: 61 LLLD 64 >gi|317488862|ref|ZP_07947392.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA] gi|316911936|gb|EFV33515.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA] Length = 176 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 20/143 (13%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG ++ +RK +Q+E+A V+ +E + S+ A L +S D + Sbjct: 2 VGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLCGVSLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 EV + + + L K R + E + + Sbjct: 62 ADEVEVVVADPDQAAGKPRDLHVLRHLEGKQCRICYRYTHDEI------------DIFKA 109 Query: 150 RTIPEIKPARKIKQVTKKHLDWI 172 ++P K +V W+ Sbjct: 110 VSMP-----EK-ARVLDVSDGWL 126 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +L +RK +GMSQ E LG+ T+SN+E + P + A + ++ LD + Sbjct: 1 MVGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLCGVSLDDL 60 >gi|168183950|ref|ZP_02618614.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672974|gb|EDT84935.1| transcriptional regulator [Clostridium botulinum Bf] Length = 92 Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++++R+ TQ+E+ N AV+ +E G +I + + N + +S D++ Sbjct: 2 FGDRLRELREEKQLTQEELGKLLNVSRQAVSSYEKGENEPTIDALVKIANIFNVSLDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 K + + + Sbjct: 62 GRTKERYNLNLKDKKNKELLLDLIKVI 88 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL+ +R++K ++Q E GKLL + +S+YE+G P I KI + LD++ Sbjct: 1 MFGDRLRELREEKQLTQEELGKLLNVSRQAVSSYEKGENEPTIDALVKIANIFNVSLDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 + ++K K + Sbjct: 61 LGRTKERYNLNLKDKKNKE 79 >gi|325697585|gb|EGD39470.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] Length = 205 Score = 81.9 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + +E++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLAEQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGIEPVVQKEEEQSIKH 79 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 39/76 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ + LG+ +S +E +++P++ + + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLAEQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIEPVVQKEEEQS 76 >gi|257877340|ref|ZP_05656993.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811506|gb|EEV40326.1| predicted protein [Enterococcus casseliflavus EC20] Length = 263 Score = 81.9 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 41/88 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G IK+ R N TQ+++A ++ +ENG + + L + +E++ D++ Sbjct: 2 DIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSSYFELTLDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++T ++ + A L Sbjct: 62 LKEDQQMVQELNLTTHRKRIGLVLIALL 89 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 34/71 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K R + ++Q + + + +S +E G++ P++ K+ + LD+ Sbjct: 1 MDIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSSYFELTLDY 60 Query: 172 IYFGDEVIVPK 182 + D+ +V + Sbjct: 61 LLKEDQQMVQE 71 >gi|191639701|ref|YP_001988867.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190714003|emb|CAQ68009.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327383814|gb|AEA55290.1| Transcriptional regulator [Lactobacillus casei LC2W] Length = 185 Score = 81.9 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R+K +RKA TQ ++A V+ +E G ++ L + Y+++ D + Sbjct: 6 LGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVDDLI 65 Query: 92 DGEVIDRRYED 102 + + + Sbjct: 66 HQQSVPCADDQ 76 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + ++G+RLK +RK +GM+Q + L + T+S++E GR P+++ ++ + Sbjct: 1 MSDLSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLT 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDDLI 65 >gi|325957710|ref|YP_004293122.1| hypothetical protein LAC30SC_10450 [Lactobacillus acidophilus 30SC] gi|325334275|gb|ADZ08183.1| hypothetical protein LAC30SC_10450 [Lactobacillus acidophilus 30SC] Length = 125 Score = 81.9 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I +R NN +Q+E+A N +V+ +E+G + + L N +++S D++ Sbjct: 2 NLNQKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDYL 61 Query: 91 YDGEVIDRRYEDVTNK 106 Sbjct: 62 LKDNNEKESNSSTKKH 77 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 31/76 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ +R D SQ E + L + ++S +E G++ P++ + + D+ Sbjct: 1 MNLNQKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + + S + Sbjct: 61 LLKDNNEKESNSSTKK 76 >gi|291546039|emb|CBL19147.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 318 Score = 81.9 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +K RK N TQ+++A V+ +E G+ + + L Y++ Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSVLVQLAEYYDVEMRE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYA-IGARLKS 120 + DGE + + K+ LD A +K Sbjct: 64 LLDGE--RSQTMNKDMKETLDKVAVYEEWVKQ 93 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IGA LK RK+K ++Q + + G+ T+S +E G +P++ ++ + Sbjct: 1 MDTKKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSVLVQLAEYYDVE 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 MRELLDGE 68 >gi|257870456|ref|ZP_05650109.1| predicted protein [Enterococcus gallinarum EG2] gi|257804620|gb|EEV33442.1| predicted protein [Enterococcus gallinarum EG2] Length = 207 Score = 81.9 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK +RKA TQKE+A N ++ +E + + + L + IS D + Sbjct: 3 EIGENIKKLRKAKRMTQKEVANQLNVTPQTISKWERNISYPDLDMLVKLSQLFHISTDAL 62 Query: 91 YDGEVIDRRYEDVTNKKR 108 + KKR Sbjct: 63 LGNTKPTFFASLFSKKKR 80 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +K +RK K M+Q E L + T+S +E+ + P++ K+ Q+ D Sbjct: 1 MVEIGENIKKLRKAKRMTQKEVANQLNVTPQTISKWERNISYPDLDMLVKLSQLFHISTD 60 Query: 171 WIY 173 + Sbjct: 61 ALL 63 >gi|114567063|ref|YP_754217.1| XRE family transcriptional regulator [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337998|gb|ABI68846.1| putative transcriptional regulator, XRE family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 359 Score = 81.9 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI +RK N +Q +A A A++ +E+G S S + L + + D++ Sbjct: 3 ISERINKLRKERNMSQALLAERAGLKAPAISQYESGARSPSFESLIKLSSALGVPSDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPY 112 GE E + R+ + Sbjct: 63 LGEEAAPYEESSDSLSRMIMH 83 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+ +RK++ MSQ + G+ +S YE G P + K+ D+ Sbjct: 1 MTISERINKLRKERNMSQALLAERAGLKAPAISQYESGARSPSFESLIKLSSALGVPSDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G+E + + Sbjct: 61 LLLGEEAAPYEESSDS 76 >gi|325569494|ref|ZP_08145590.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157283|gb|EGC69446.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 146 Score = 81.9 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK+ R TQ+E++ ++ +EN + I + L + Y+I + + Sbjct: 3 IAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLEALL 62 Query: 92 DGEVIDRRYEDVTNKKR 108 E + E ++ +K+ Sbjct: 63 KPEQLADEPERMSEEKK 79 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R G++Q E + L + T+SN+E R+ P+I K+ + + L+ Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLEA 60 Query: 172 IYFGDEVI-VPKSIKRAK 188 + +++ P+ + K Sbjct: 61 LLKPEQLADEPERMSEEK 78 >gi|229489883|ref|ZP_04383739.1| putative repressor protein [Rhodococcus erythropolis SK121] gi|229323233|gb|EEN88998.1| putative repressor protein [Rhodococcus erythropolis SK121] Length = 174 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 48/133 (36%), Gaps = 18/133 (13%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R T ++++ +V+ +E G + + + +E ++S + Sbjct: 36 DRLRELRVKAGLTPDDLSVRIGSSRQSVSHWETGRSTPAPPVLKQIADELDVSISVLVPI 95 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 R D +R G++QI+ + L + ++L+ E+G Sbjct: 96 PDNRLRMGD------------------LRVRAGLTQIQAAEQLSISPTSLAEIEKGMKPV 137 Query: 154 EIKPARKIKQVTK 166 I + Sbjct: 138 NEDRLEAIAGLYG 150 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +R G++ + +G ++S++E GR+ P ++I + + Sbjct: 33 FRADRLRELRVKAGLTPDDLSVRIGSSRQSVSHWETGRSTPAPPVLKQIADELDVSISVL 92 Query: 173 Y 173 Sbjct: 93 V 93 >gi|312792894|ref|YP_004025817.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312878073|ref|ZP_07738009.1| transcriptional regulator, XRE family [Caldicellulosiruptor lactoaceticus 6A] gi|311795152|gb|EFR11545.1| transcriptional regulator, XRE family [Caldicellulosiruptor lactoaceticus 6A] gi|312180034|gb|ADQ40204.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 285 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 38/84 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ TQ+E+A+ +++ +ENG + + + + ++ D++ Sbjct: 5 RLKELREEKGLTQEELALMLGLKRQSISNYENGGRQPDYNTLIKIADFFGVTVDYLVGHS 64 Query: 95 VIDRRYEDVTNKKRLDPYAIGARL 118 R E+ + + Y + + Sbjct: 65 DFRTREEEFKGRNFYEKYKLDEVI 88 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK +R++KG++Q E +LG+ ++SNYE G P+ KI +D++ Sbjct: 1 MFPYRLKELREEKGLTQEELALMLGLKRQSISNYENGGRQPDYNTLIKIADFFGVTVDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + + KG +K K D+ Sbjct: 61 VGHSDFRTRE--EEFKGRNFYEKYKLDE 86 >gi|42519880|ref|NP_965810.1| hypothetical protein LJ1831 [Lactobacillus johnsonii NCC 533] gi|41584170|gb|AAS09776.1| hypothetical protein LJ_1831 [Lactobacillus johnsonii NCC 533] Length = 161 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D +IK +RK NN TQ+EMA N ++ +EN + + + +S D + Sbjct: 2 DFNEQIKRLRKENNLTQEEMAKKLNVTRQTISNWENNRNLPDFEIIILIAETFGVSLDEL 61 Query: 91 YDGEVIDRRYEDV 103 G+ + E Sbjct: 62 ILGDKKMNKIEQT 74 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 39/86 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K +RK+ ++Q E K L + T+SN+E R +P+ + I + LD Sbjct: 1 MDFNEQIKRLRKENNLTQEEMAKKLNVTRQTISNWENNRNLPDFEIIILIAETFGVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD+ + + ++ +K Sbjct: 61 LILGDKKMNKIEQTLINDGKRTRAAK 86 >gi|332364707|gb|EGJ42476.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 205 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + ++++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGIEPVVQKEEEQSIKY 79 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIEPVVQKEEEQS 76 >gi|225376377|ref|ZP_03753598.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM 16841] gi|225211753|gb|EEG94107.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM 16841] Length = 380 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 3/100 (3%) Query: 4 NPFLETSLKSLQEYTLIITPEIRQYWKDV---GTRIKDIRKANNKTQKEMAIGANQLESA 60 F E + K + + + ++V +I ++RK N +Q+E+A + Sbjct: 20 EKFFEDTKKRTESEKQLSGKRKDEKMEEVMILADKIINLRKKNGWSQEELAEKLGVTRQS 79 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRY 100 ++ +E + L L + ++ D++ E+ + Y Sbjct: 80 ISKYEGAQSIPDLDKILKLSEIFGVTTDYLIKDELEEEEY 119 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 46/100 (46%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E + ++K + + ++ ++RK G SQ E + LG+ ++S YE ++IP Sbjct: 31 ESEKQLSGKRKDEKMEEVMILADKIINLRKKNGWSQEELAEKLGVTRQSISKYEGAQSIP 90 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSS 193 ++ K+ ++ D++ + + + + N+S Sbjct: 91 DLDKILKLSEIFGVTTDYLIKDELEEEEYASSQMQENESE 130 >gi|327459012|gb|EGF05360.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 205 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + +E++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGIEPVVQKEEEQSIKH 79 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIEPVVQKEEEQS 76 >gi|325678585|ref|ZP_08158195.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109635|gb|EGC03841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 220 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 Y++ T KK D + ++ +R +KG SQ + + T+SN+E + P++ Sbjct: 12 YDEFTQKKGGDLMELCKTIRKLRTEKGWSQEMLAEKAYVSRQTVSNWENEKCYPDVHSLL 71 Query: 160 KIKQVTKKHLDWIYFGDEVIVPKSI--KRAKGNQSSK 194 + + LD + GD + K++ K AK ++S+ Sbjct: 72 ILSDLFGVSLDELIKGDVETMKKTVNEKDAKTLKTSQ 108 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 E+T ++ + K I+ +R +Q+ +A A V+ +EN C + Sbjct: 13 DEFTQKKGGDLMELCKT----IRKLRTEKGWSQEMLAEKAYVSRQTVSNWENEKCYPDVH 68 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 L L + + +S D + G+V + Sbjct: 69 SLLILSDLFGVSLDELIKGDVETMKKTVNEKD 100 >gi|325567650|ref|ZP_08144317.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325159083|gb|EGC71229.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 172 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 38/89 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K R+++ +Q +A +++ +ENG I + L + Y++S D + Sbjct: 3 LAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDELL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + + N++ D + L+ Sbjct: 63 RENEALKERIETNNQEINDKKEKLSLLQR 91 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +LKS R+ G+SQ + L + ++S +E GR P+I+ + + + +D Sbjct: 1 MALAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + +E + + I+ + KK K Sbjct: 61 LLRENEAL-KERIETNNQEINDKKEK 85 >gi|91774792|ref|YP_544548.1| transcriptional regulator [Methylobacillus flagellatus KT] gi|91708779|gb|ABE48707.1| transcriptional regulator, XRE family with cupin sensor domain [Methylobacillus flagellatus KT] Length = 212 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 38/84 (45%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 EI+ K +G IKDIR+ + T E+A AN ++ ENG+ STS+ L N Sbjct: 15 SEIKPLGKHLGNVIKDIRQQHGLTIAEVAERANISRGMLSKIENGLVSTSLDTLEQLANS 74 Query: 83 YEISFDWIYDGEVIDRRYEDVTNK 106 ++ ++ G + K Sbjct: 75 LGVTISRLFQGYNQPTGGAQLVKK 98 Score = 61.5 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K IR+ G++ E + + LS E G + ++ + ++ G Sbjct: 26 NVIKDIRQQHGLTIAEVAERANISRGMLSKIENGLVSTSLDTLEQLANSLGVTISRLFQG 85 Query: 176 --DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + +K+ +G + ++ ++ + Sbjct: 86 YNQPTGGAQLVKKGQGMEVVRRGTRNGHT 114 >gi|266619976|ref|ZP_06112911.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288868440|gb|EFD00739.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 260 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 1/107 (0%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ ++RK +Q+ +A N A++ +EN L L + +++ D++ Sbjct: 2 NFGEKLFNLRKEKGLSQEALAEQLNTTRQAISKWENNHGYPETEKLLKLSDIFQVPVDFL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 E ++ N A+ ++ LLG Sbjct: 62 LK-ETTGIENQNSGNIYVTREMAVSYLSSESMVNRYFGLGTAAWLLG 107 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L ++RK+KG+SQ + L +S +E PE + K+ + + +D+ Sbjct: 1 MNFGEKLFNLRKEKGLSQEALAEQLNTTRQAISKWENNHGYPETEKLLKLSDIFQVPVDF 60 Query: 172 IY---FGDEVIVPKSIKRAKGNQSSKKSKKD 199 + G E +I + S S + Sbjct: 61 LLKETTGIENQNSGNIYVTREMAVSYLSSES 91 >gi|254390836|ref|ZP_05006047.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326444447|ref|ZP_08219181.1| putative XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704534|gb|EDY50346.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 199 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 35/89 (39%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + +P I Q +VG R++ +R + +A +S ++ E+G S+ L Sbjct: 1 MKQSPAISQVLDEVGPRLRWLRTQRGVSLTAIAEATGISKSTLSRLESGQRRPSLELLLP 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 + +++ D + + + + Sbjct: 61 IAQAHQVPLDELVGAPEVGDPRIRTSPRS 89 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R +G+S + G+ STLS E G+ P ++ I Q + LD + E Sbjct: 18 LRWLRTQRGVSLTAIAEATGISKSTLSRLESGQRRPSLELLLPIAQAHQVPLDELVGAPE 77 Query: 178 VIVPKSIKRAKG 189 V P+ + Sbjct: 78 VGDPRIRTSPRS 89 >gi|229170243|ref|ZP_04297926.1| Transcriptional regulator, XRE [Bacillus cereus AH621] gi|228613239|gb|EEK70381.1| Transcriptional regulator, XRE [Bacillus cereus AH621] Length = 166 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 IR+ +G RIK +RK N TQK++A + + +E+ L + + Sbjct: 19 IREVNNVIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFS 78 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 +S D++ V D + + K D +K Sbjct: 79 VSADYLLGRAVTDETKKQLVPKDEKDIAKRMEEIKK 114 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+RK + ++Q + + +G+ + YE P K+ D++ Sbjct: 30 IKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYLLGRAV 89 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSS 203 K K + K ++ K Sbjct: 90 TDETKKQLVPKDEKDIAKRMEEIKKD 115 >gi|291544668|emb|CBL17777.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 119 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +I+ +RK N TQ ++A S++ L+ENG+ S YL + +S D+ Sbjct: 6 KGIGNKIRQLRKENKLTQAQLAAVCYINRSSIGLYENGLREPSAGTIAYLAKYFNVSVDY 65 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + +R K LK + Sbjct: 66 LLGVDECKQRNNIDMQTKLYKIGKEHELLKERIETL 101 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 D IG +++ +RK+ ++Q + + + S++ YE G P + + Sbjct: 1 MDFDLKGIGNKIRQLRKENKLTQAQLAAVCYINRSSIGLYENGLREPSAGTIAYLAKYFN 60 Query: 167 KHLDWIYFGDEVIVPKSIK 185 +D++ DE +I Sbjct: 61 VSVDYLLGVDECKQRNNID 79 >gi|325831430|ref|ZP_08164684.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325486684|gb|EGC89132.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 205 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G ++K +R TQ+++A +AV+ +E G S ++ + +++S D + Sbjct: 2 DFGEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDDL 61 Query: 91 YDGEV 95 + Sbjct: 62 LSADD 66 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 41/82 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK++R ++G++Q + L + + +S +E G P + + + ++ +D Sbjct: 1 MDFGEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + D++IV +R +SS Sbjct: 61 LLSADDLIVLARDERRSTARSS 82 >gi|295104278|emb|CBL01822.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 120 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 11/109 (10%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + D+G RI+ R A TQ+++A + + ++ E G S++ + + N + S D Sbjct: 4 YADIGKRIRACRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDCSAD 63 Query: 89 WIYDGEVIDRRYEDVTNKKRL--DPYAIGARL---------KSIRKDKG 126 + E+ + + D A A++ KS+RK G Sbjct: 64 ELLCIEIKKAKPVFDSWMTEQLADCSADEAKIIKETVVSLKKSLRKVYG 112 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D IG R+++ R KGM+Q + +G+ + +S+ E G ++P +K I Sbjct: 1 MVDYADIGKRIRACRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDC 60 Query: 168 HLDWIY 173 D + Sbjct: 61 SADELL 66 >gi|325845348|ref|ZP_08168648.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325488602|gb|EGC91011.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 194 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G +I +RK +Q+++A+ N A++ +E G + + L + +S Sbjct: 2 FEMMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSI 61 Query: 88 DWIYDGE 94 D + G+ Sbjct: 62 DSLLRGD 68 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G ++ +RK++ +SQ + L + +S +E G IP+ + ++ +V Sbjct: 1 MFEMMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVS 60 Query: 169 LDWIYFGD 176 +D + GD Sbjct: 61 IDSLLRGD 68 >gi|225572080|ref|ZP_03780944.1| hypothetical protein RUMHYD_00374 [Blautia hydrogenotrophica DSM 10507] gi|225040414|gb|EEG50660.1| hypothetical protein RUMHYD_00374 [Blautia hydrogenotrophica DSM 10507] Length = 192 Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 37/79 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ R + +Q+ +A ++ +ENG + + L +E+S D + Sbjct: 2 ELGKQIRRYRNERSFSQETLAEKVYVSRQTISNWENGKSYPDVNSLVLLSEAFEVSLDKL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 G+V + + + +++ Sbjct: 62 IKGDVENMKEQINREDQQI 80 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ R ++ SQ + + + T+SN+E G++ P++ + + + LD Sbjct: 1 MELGKQIRRYRNERSFSQETLAEKVYVSRQTISNWENGKSYPDVNSLVLLSEAFEVSLDK 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + GD + + I R Sbjct: 61 LIKGDVENMKEQINREDQQ 79 >gi|228975724|ref|ZP_04136261.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784000|gb|EEM32042.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 142 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 37/89 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N TQK++A + + +E+ L + + +S D++ Sbjct: 2 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 V D E VT K D +K Sbjct: 62 GRSVTDEPNEQVTPKDEKDIAKRMEEIKK 90 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+RK + ++Q + + +G+ + YE P K+ D++ Sbjct: 6 IKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYLLGRSV 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSS 203 P K + K ++ K Sbjct: 66 TDEPNEQVTPKDEKDIAKRMEEIKKD 91 >gi|297153462|gb|ADI03174.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 204 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ T ++A ES ++ E+G S+ L L Y + D + Sbjct: 16 VGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLPLARIYGVPLDDLV 75 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+D+G++ + G+ STLS E G+ P ++ + ++ LD + Sbjct: 15 AVGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLPLARIYGVPLDDL 74 Query: 173 Y----FGDEVIVPKSIKR 186 GD I K I+R Sbjct: 75 VGAPRTGDPRIHLKPIRR 92 >gi|323353424|ref|ZP_08087957.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121370|gb|EFX93133.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 205 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + ++++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGIEPVVQKEEEQSIKY 79 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIEPVVQKEEEQS 76 >gi|227518256|ref|ZP_03948305.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227554727|ref|ZP_03984774.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256963254|ref|ZP_05567425.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257088722|ref|ZP_05583083.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|307270406|ref|ZP_07551709.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307287459|ref|ZP_07567511.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|312905012|ref|ZP_07764144.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227074295|gb|EEI12258.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227176142|gb|EEI57114.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256953750|gb|EEU70382.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256997534|gb|EEU84054.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|306501505|gb|EFM70804.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306513253|gb|EFM81882.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310631673|gb|EFQ14956.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 204 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 41/107 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +R N TQ+++A +A++ +E+G +I + + ++ D + Sbjct: 2 EFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 GE + E Y + + + +G +G Sbjct: 62 LSGEELITLAETENRSNLKKIYNYIYGILDMMAVAFIFLPLYGNSVG 108 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +R K ++Q + + L + + +S +E G+ P I+ + I + +D Sbjct: 1 MEFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + G+E+I + N+S+ K + Sbjct: 61 LLSGEELITLAETE----NRSNLKKIYNY 85 >gi|319936892|ref|ZP_08011303.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1] gi|319807991|gb|EFW04566.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1] Length = 375 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK TQ+E+A A++ +E+ ++ L L N +EI+ D + Sbjct: 3 LGKRIQYYRKRKQLTQEELAEKLMVSRQAISRWESDNNEPDVKTLLILANIFEITVDELV 62 Query: 92 DGEVIDRRYEDVTNKKRLD--PYAIGARLKSIRKDKGM 127 ++ +++ D + L++ RK+ + Sbjct: 63 RENEVNIDNQNIIENGSEDIIIHQQEEILRTHRKNHRL 100 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ RK K ++Q E + L + +S +E P++K + + + +D Sbjct: 1 MTLGKRIQYYRKRKQLTQEELAEKLMVSRQAISRWESDNNEPDVKTLLILANIFEITVDE 60 Query: 172 IYFGDEVIVP 181 + +EV + Sbjct: 61 LVRENEVNID 70 >gi|324992103|gb|EGC24025.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|324994197|gb|EGC26111.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] gi|327472822|gb|EGF18249.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 205 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + +E++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGMEPVVQKEEEQSIKH 79 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGMEPVVQKEEEQS 76 >gi|319936497|ref|ZP_08010913.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808612|gb|EFW05164.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 241 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +RK +Q+E A +V+ +E+G + + + N +E+S D + G Sbjct: 5 ENLSSLRKQKGYSQEEFAYLLGVSRQSVSKWESGASIPELERLVEIANIFEVSLDELVKG 64 Query: 94 EV 95 E Sbjct: 65 EK 66 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L S+RK KG SQ EF LLG+ ++S +E G +IPE++ +I + + LD Sbjct: 1 MKLYENLSSLRKQKGYSQEEFAYLLGVSRQSVSKWESGASIPELERLVEIANIFEVSLDE 60 Query: 172 IYFGDE-VIVPKSIKRAKGNQSSKKS-KKDKKSS 203 + G++ VI I + ++ +KS + KS Sbjct: 61 LVKGEKAVIQGAVISDEQLHRVLRKSMSYEYKSR 94 >gi|258513519|ref|YP_003189741.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257777224|gb|ACV61118.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 141 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E+ +++G R+ +IR N TQKE+A S + E G+ S+ + + + Sbjct: 2 SELSFSTQELGKRVAEIRGKN--TQKELAKAIGVSRSYIGNIEQGITVPSLEVLINIAQQ 59 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKR 108 Y +S DW+ G T + Sbjct: 60 YHVSLDWLVYGNTNSSPVAGATGYQH 85 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ IR +Q E K +G+ S + N EQG T+P ++ I Q LDW+ +G Sbjct: 13 KRVAEIRGKN--TQKELAKAIGVSRSYIGNIEQGITVPSLEVLINIAQQYHVSLDWLVYG 70 Query: 176 DEVIVP 181 + P Sbjct: 71 NTNSSP 76 >gi|289522427|ref|ZP_06439281.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504263|gb|EFD25427.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 216 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +RK T E+A S ++ E G + S+ + + E + S D++ Sbjct: 2 LGERIRTLRKKMRMTATELARRVKTSPSHISEIERGEKTPSLNLLVKIAKELQTSIDYLT 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 E ++ +VT LD ++ A Sbjct: 62 GLEGFSKKALNVTEVALLDQASVTA 86 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R++++RK M+ E + + S +S E+G P + KI + + +D++ Sbjct: 1 MLGERIRTLRKKMRMTATELARRVKTSPSHISEIERGEKTPSLNLLVKIAKELQTSIDYL 60 >gi|317490559|ref|ZP_07949035.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA] gi|316910339|gb|EFV31972.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA] Length = 205 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G ++K +R TQ+++A +AV+ +E G S ++ + +++S D + Sbjct: 2 DFGEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDDL 61 Query: 91 YDGEV 95 + Sbjct: 62 LSTDD 66 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 41/82 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK++R ++G++Q + L + + +S +E G P + + + ++ +D Sbjct: 1 MDFGEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + D++IV +R +SS Sbjct: 61 LLSTDDLIVLARDERRSTARSS 82 >gi|296332860|ref|ZP_06875320.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673206|ref|YP_003864878.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150140|gb|EFG91029.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411450|gb|ADM36569.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 261 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N A++ +ENG L + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKVNTTRQAISKWENGQGFPETEKLLMIGNIFEVSIDYLL 62 Query: 92 DGEVIDRRYEDV 103 V R Sbjct: 63 KDSVEPRTDNKE 74 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + + +S +E G+ PE + I + + +D+ Sbjct: 1 MTFGEKLFKLRKEKGLSQEALAEKVNTTRQAISKWENGQGFPETEKLLMIGNIFEVSIDY 60 Query: 172 IYFG 175 + Sbjct: 61 LLKD 64 >gi|197302037|ref|ZP_03167098.1| hypothetical protein RUMLAC_00765 [Ruminococcus lactaris ATCC 29176] gi|197298846|gb|EDY33385.1| hypothetical protein RUMLAC_00765 [Ruminococcus lactaris ATCC 29176] Length = 336 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I + RK N +Q+E+A + AV+ +E+ ++ L + +E+S D++ Sbjct: 5 LSEKIAEERKKNGWSQEELAEKLSVSRQAVSKWESASSVPDLQKLLRMAKIFEVSTDYLL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E+ E +++ + D ++ Sbjct: 65 KDEMGKEEVEKISDYRTEDTVYRNVSMEEA 94 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ RK G SQ E + L + +S +E ++P+++ ++ ++ + D+ Sbjct: 3 MILSEKIAEERKKNGWSQEELAEKLSVSRQAVSKWESASSVPDLQKLLRMAKIFEVSTDY 62 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + DE+ + K + Sbjct: 63 LLK-DEMGKEEVEKISDYRTE 82 >gi|257065284|ref|YP_003144956.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792937|gb|ACV23607.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 200 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 34/65 (52%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +++++RKA + TQ+++A +AV+ +E+G SI + + ++ D + Sbjct: 2 EFGEKLQELRKARSLTQEQLAEALYVSRTAVSKWESGRGYPSIDSLKEVSRFFSVTIDEL 61 Query: 91 YDGEV 95 + Sbjct: 62 ISPDE 66 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 37/75 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L+ +RK + ++Q + + L + + +S +E GR P I +++ + +D Sbjct: 1 MEFGEKLQELRKARSLTQEQLAEALYVSRTAVSKWESGRGYPSIDSLKEVSRFFSVTIDE 60 Query: 172 IYFGDEVIVPKSIKR 186 + DEV+ +R Sbjct: 61 LISPDEVVSVAQAER 75 >gi|313247825|ref|YP_004032987.1| DNA-binding protein [Enterococcus faecalis] gi|312836992|dbj|BAJ34878.1| DNA-binding protein [Enterococcus faecalis] Length = 204 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 41/107 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +R N TQ+++A +A++ +E+G +I + + ++ D + Sbjct: 2 EFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 GE + E Y + + + +G +G Sbjct: 62 LSGEELITLAETENRSNLKKIYNYIYGILDMMAVAFIFLPLYGNSVG 108 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +R K ++Q + + L + + +S +E G+ P I+ + I + +D Sbjct: 1 MEFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + G+E+I + N+S+ K + Sbjct: 61 LLSGEELITLAETE----NRSNLKKIYNY 85 >gi|169334175|ref|ZP_02861368.1| hypothetical protein ANASTE_00571 [Anaerofustis stercorihominis DSM 17244] gi|169258892|gb|EDS72858.1| hypothetical protein ANASTE_00571 [Anaerofustis stercorihominis DSM 17244] Length = 219 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 6/146 (4%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + ++ IRK TQ+E+A +AV+ +E+G SI + + ++ Sbjct: 17 EIEVEFNEKLVLIRKEKGLTQEELASLLFVSRTAVSKWESGRGYPSIDSLKEISRVFGVT 76 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-----MPNS 141 D + G+ I E+ KK I L + FG G + Sbjct: 77 IDELLCGDEIILLVEEDNKKKGETFKNILFGLFDVFTITLFFLPLFGLKSGSKVLSVSLF 136 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKK 167 +L E IP + + V Sbjct: 137 SLKGIENYVFIPYV-LILTLCSVYGI 161 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 42/82 (51%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +L IRK+KG++Q E LL + + +S +E GR P I ++I +V +D + Sbjct: 21 EFNEKLVLIRKEKGLTQEELASLLFVSRTAVSKWESGRGYPSIDSLKEISRVFGVTIDEL 80 Query: 173 YFGDEVIVPKSIKRAKGNQSSK 194 GDE+I+ K ++ K Sbjct: 81 LCGDEIILLVEEDNKKKGETFK 102 >gi|254555732|ref|YP_003062149.1| transcriptional regulator, xre family [Lactobacillus plantarum JDM1] gi|254044659|gb|ACT61452.1| transcriptional regulator, xre family [Lactobacillus plantarum JDM1] Length = 221 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +K R+A TQ+ +A + V+ +ENG ++ + L + +IS D + Sbjct: 2 ELGQALKLQREALGLTQQVLADQLHVTRQTVSRWENGSTYPNLDTLVELSDRLQISLDKL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + V ++ D L+ + Sbjct: 62 L--KSDEVPVAPVVHQISRDVQLKRRYLRGL 90 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G LK R+ G++Q L + T+S +E G T P + ++ + LD Sbjct: 1 MELGQALKLQREALGLTQQVLADQLHVTRQTVSRWENGSTYPNLDTLVELSDRLQISLDK 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + DEV V + + + K+ Sbjct: 61 LLKSDEVPVAPVVHQISRDVQLKRR 85 >gi|259909785|ref|YP_002650141.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96] gi|224965407|emb|CAX56939.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96] gi|283479880|emb|CAY75796.1| putative HTH-type transcriptional regulatory protein PF1851 [Erwinia pyrifoliae DSM 12163] Length = 133 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 6/130 (4%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + L S + I+ E R ++ +G R+ +RK TQ E+A N + V +E Sbjct: 1 MAVLLHSGTTTAMAISDEERDFFIALGERMTRLRKEQGITQSELADKLNVSQQTVQAWEA 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 G + ++ + + + ++ G + K L Sbjct: 61 GRRRIKVSSLPFVAQIFSVPLEELFGGSPEKVLRKRGPTAKWQQLIEEVDDLPKA----- 115 Query: 127 MSQIEFGKLL 136 Q ++L Sbjct: 116 -KQKMIAEML 124 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 50/105 (47%), Gaps = 4/105 (3%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +++++R A+G R+ +RK++G++Q E L + T+ +E GR ++ Sbjct: 13 MAISDEERDFFIALGERMTRLRKEQGITQSELADKLNVSQQTVQAWEAGRRRIKVSSLPF 72 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + Q+ L+ ++ G P+ + R +G + + ++ P Sbjct: 73 VAQIFSVPLEELFGG----SPEKVLRKRGPTAKWQQLIEEVDDLP 113 >gi|266622984|ref|ZP_06115919.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288865257|gb|EFC97555.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 365 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI +RK TQ ++A AV+ +E+G+ I + L +S D + Sbjct: 32 MGERITYLRKRKKMTQAQLAEQLGISAQAVSKWESGLSCPDIMTLVPLSQVLGVSTDELL 91 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 37/83 (44%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + E ++K P A+G R+ +RK K M+Q + + LG+ +S +E G Sbjct: 9 MSEDQSGTDIEKNADRKIFIPGAMGERITYLRKRKKMTQAQLAEQLGISAQAVSKWESGL 68 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 + P+I + QV D + Sbjct: 69 SCPDIMTLVPLSQVLGVSTDELL 91 >gi|227532834|ref|ZP_03962883.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189538|gb|EEI69605.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 185 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R+K +RKA TQ ++A V+ +E G ++ L + Y+++ D + Sbjct: 6 LGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVDDLL 65 Query: 92 DGEVID 97 + + Sbjct: 66 HQQSVP 71 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + ++G+RLK +RK +GM+Q + L + T+S++E GR P+++ ++ + Sbjct: 1 MSDLSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLT 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDDLL 65 >gi|223985127|ref|ZP_03635223.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM 12042] gi|223962949|gb|EEF67365.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM 12042] Length = 260 Score = 81.5 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK +Q+ +A AV+ +EN L L + +S D++ Sbjct: 2 NFGEKLFKLRKEKGLSQEALADQLGTTRQAVSKWENNQGYPETEKILQLSQLFGVSTDYL 61 Query: 91 YDGEVIDRRYEDV 103 E ++R ++ Sbjct: 62 LKAEKLERTADEK 74 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ LG +S +E + PE + ++ Q+ D+ Sbjct: 1 MNFGEKLFKLRKEKGLSQEALADQLGTTRQAVSKWENNQGYPETEKILQLSQLFGVSTDY 60 Query: 172 IYFGDEVIVPKSIK 185 + +++ K Sbjct: 61 LLKAEKLERTADEK 74 >gi|118578597|ref|YP_899847.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501307|gb|ABK97789.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 185 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 30/176 (17%) Query: 6 FLETSLKSLQEYTLIITPEIRQYW------KDVGTRIKDIRKANNKTQKEMAIGANQLES 59 FL S +++ IT E +Q +G I+ R Q+E+A ES Sbjct: 20 FLYNSYTKRHSFSIKITTEKQQLPGYPTNPITIGDHIRKRRMDLGLLQREVAEIVGVTES 79 Query: 60 AVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 +V +E+G ++Y + N D D A K Sbjct: 80 SVWNWEHG-TEPELQYNPKIINFLG--------YAPFDCPD---------DTVGRLAWYK 121 Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL---DWI 172 GM+ G+++G LS++ GR P K KI++ + + +W+ Sbjct: 122 RAM---GMNLDRLGEVMGCDPEQLSDWLSGRHKPFRKSLEKIERFLGREIGGTEWL 174 >gi|302387287|ref|YP_003823109.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302197915|gb|ADL05486.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 331 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 35/85 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK +Q+E+A +V+ +E+G + L L + +S D++ Sbjct: 3 LAEKITALRKKVGWSQEELAYQMGVSRQSVSKWESGTSIPDLERILKLSQVFGVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 E+ R + Y + + Sbjct: 63 KEEIETAPTAVTQESDRDEEYKMVS 87 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 39/84 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ ++RK G SQ E +G+ ++S +E G +IP+++ K+ QV D+ Sbjct: 1 MILAEKITALRKKVGWSQEELAYQMGVSRQSVSKWESGTSIPDLERILKLSQVFGVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + + P ++ + K Sbjct: 61 LLKEEIETAPTAVTQESDRDEEYK 84 >gi|229160095|ref|ZP_04288097.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803] gi|228623406|gb|EEK80230.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803] Length = 149 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + G Sbjct: 5 ERLKQEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRG 64 Query: 94 EVIDRRYEDVTNKK 107 + + +KK Sbjct: 65 DEELTQKVIEDSKK 78 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKQEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + GDE + K I+ +K Sbjct: 61 LLRGDEELTQKVIEDSK 77 >gi|302672234|ref|YP_003832194.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396707|gb|ADL35612.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 374 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 40/72 (55%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G++IK++R A N TQ+++A N +++ +ENG+ + I + + +S D++ Sbjct: 3 NLGSKIKELRIAENLTQEKLAEELNVSFQSISRWENGISTPDISLIPAIARFFGVSTDYL 62 Query: 91 YDGEVIDRRYED 102 + + + E Sbjct: 63 FGLQDEESEAEK 74 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G+++K +R + ++Q + + L + ++S +E G + P+I I + D Sbjct: 1 MNNLGSKIKELRIAENLTQEKLAEELNVSFQSISRWENGISTPDISLIPAIARFFGVSTD 60 Query: 171 WIYF--GDEVIVPKSIKRAKGNQSSKKSKKDK 200 +++ +E KS A K+ D+ Sbjct: 61 YLFGLQDEESEAEKSELEAAYWDYRKEGNLDE 92 >gi|134298860|ref|YP_001112356.1| helix-turn-helix domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051560|gb|ABO49531.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1] Length = 134 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 12/134 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R A+ Q+++A A V +EN S+ + I + Sbjct: 13 VGGRIRYYRLAHGLLQEDVATKAGIDVCTVKRYENNQREESLEICNKIAEAIGIDP-KLL 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E + D G R+KS R ++Q +FG+LLG+ T+ +E+ R Sbjct: 72 YDEYLSFTASD-----------YGKRIKSSRIKLNLTQQDFGQLLGVHRKTVVCWEKARK 120 Query: 152 IPEIKPARKIKQVT 165 P + + + Sbjct: 121 KPLREHYLLLAKFL 134 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D ++G R++ R G+ Q + G+ T+ YE + ++ KI + Sbjct: 9 DLNSVGGRIRYYRLAHGLLQEDVATKAGIDVCTVKRYENNQREESLEICNKIAEAIGIDP 68 Query: 170 DWIYFGD 176 + + + Sbjct: 69 -KLLYDE 74 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 17/53 (32%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 D G RIK R N TQ++ V +E + L L Sbjct: 82 DYGKRIKSSRIKLNLTQQDFGQLLGVHRKTVVCWEKARKKPLREHYLLLAKFL 134 >gi|222152205|ref|YP_002561380.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113016|emb|CAR40321.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 135 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 41/85 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++K +R+A N +Q+ +A A++ +ENG + + + L +++S D + G Sbjct: 6 SQLKILRQAKNLSQEALAEQLFISRQAISKWENGDATPDLENLVKLAEIFKVSLDELVLG 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + ID +D + + L + Sbjct: 66 KKIDSNQDDEEDDENLHLLTNREYV 90 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++LK +R+ K +SQ + L + +S +E G P+++ K+ ++ K LD Sbjct: 1 MTPFSSQLKILRQAKNLSQEALAEQLFISRQAISKWENGDATPDLENLVKLAEIFKVSLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGN 190 + G ++ + + N Sbjct: 61 ELVLGKKIDSNQDDEEDDEN 80 >gi|259502266|ref|ZP_05745168.1| DNA-binding protein [Lactobacillus antri DSM 16041] gi|259169884|gb|EEW54379.1| DNA-binding protein [Lactobacillus antri DSM 16041] Length = 204 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D T+IK+ RK TQ ++A ++ +E G + + L Y IS D + Sbjct: 2 DFSTQIKEQRKKLGLTQADVAHQLFVTRQTISNWEQGKSYPDLAMLVKLSEVYRISLDTL 61 Query: 91 YDGE 94 G+ Sbjct: 62 LKGD 65 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K RK G++Q + L + T+SN+EQG++ P++ K+ +V + LD Sbjct: 1 MDFSTQIKEQRKKLGLTQADVAHQLFVTRQTISNWEQGKSYPDLAMLVKLSEVYRISLDT 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LLKGD 65 >gi|160944796|ref|ZP_02092023.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii M21/2] gi|158443980|gb|EDP20984.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii M21/2] Length = 120 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 11/109 (10%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + D+G RI+ R A TQ+++A + + ++ E G S++ + + N + S D Sbjct: 4 YADIGKRIRTCRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDCSAD 63 Query: 89 WIYDGEVIDRRYEDVTNKKRL--DPYAIGARL---------KSIRKDKG 126 + E+ + + D A A++ KS+RK G Sbjct: 64 ELLCIEIKKAKPVFDSWMTEQLADCSADEAKIIKETVVNLKKSLRKVYG 112 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D IG R+++ R KGM+Q + +G+ + +S+ E G ++P +K I Sbjct: 1 MVDYADIGKRIRTCRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDC 60 Query: 168 HLDWIY 173 D + Sbjct: 61 SADELL 66 >gi|325689390|gb|EGD31395.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 205 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RK +Q+ +A AV+ +E+ + + + + +E++ D++ Sbjct: 2 NLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGVEPVVQKEEEQSIKH 79 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + + D+ Sbjct: 1 MNLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGVEPVVQKEEEQS 76 >gi|325688449|gb|EGD30467.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 205 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RK +Q+ +A AV+ +E+ + + + + +E++ D++ Sbjct: 2 NLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGVEPVVQKEEEQSIKH 79 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + + D+ Sbjct: 1 MNLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGVEPVVQKEEEQS 76 >gi|293568994|ref|ZP_06680307.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|291588427|gb|EFF20262.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] Length = 308 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 11/153 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYALYLRNEYEISF 87 +G RI++IRK +T ++ N A VN +E G I + + +++ Sbjct: 157 MGKRIQEIRKNRGETLEKFGK--NFTRPAGKNVVNRWEKGTNVPDIERLMNVAYFGKVTV 214 Query: 88 DWIYDGEVID---RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG--MPNST 142 +I GE +R + ++LD + +G R + IR+D + + +FGK + + Sbjct: 215 PYILYGETFSKMLKRGNTINQFEKLDSFRMGLRFRKIRRDYRLEREDFGKFFSPPITKWS 274 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + YE G+ IP + + K L+++ +G Sbjct: 275 MDKYENGKDIPNTDRIIQYAYIGKVSLEFLIYG 307 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 15/140 (10%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G +K+ R + TQ+++A +N ++ + +ENG+ S S + L + Sbjct: 5 KDELIKMGNNLKEARLSKQLTQEKLARLSNISQATIVKYENGLRSISKKNDRILSDVLG- 63 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 E + L+ + S+ + K LG+ S L+ Sbjct: 64 --------------AESFIKDMTQRKQQVLIDLEKYQTTNNFSREDLSKKLGIEISLLNK 109 Query: 146 YEQGRTIPEIKPARKIKQVT 165 + KI Q+ Sbjct: 110 FLNQSRPLSKNAIVKITQLL 129 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 62/145 (42%), Gaps = 9/145 (6%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ + NN ++++++ S +N F N S + + I + Sbjct: 82 LEKYQTTNNFSREDLSKKLGIEISLLNKFLNQSRPLSKNAIVKITQLLSNDGKEIL---M 138 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST----LSNYEQGRT 151 ++ + +D A+G R++ IRK++G + +FGK ++ +E+G Sbjct: 139 DIKQVDGSFKLPIIDKIAMGKRIQEIRKNRGETLEKFGK--NFTRPAGKNVVNRWEKGTN 196 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGD 176 +P+I+ + K + +I +G+ Sbjct: 197 VPDIERLMNVAYFGKVTVPYILYGE 221 >gi|291526522|emb|CBK92109.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 190 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G+ +K++RK TQ+E A N V+ +E G+ I + + + +S Sbjct: 3 QKKIGSFLKELRKEKGITQEEFAENLNVSGRTVSRWETGVNMPDISLLVDIAEFFNVSIP 62 Query: 89 WIYDGE 94 I +GE Sbjct: 63 EIINGE 68 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG+ LK +RK+KG++Q EF + L + T+S +E G +P+I I + Sbjct: 1 MNQKKIGSFLKELRKEKGITQEEFAENLNVSGRTVSRWETGVNMPDISLLVDIAEFFNVS 60 Query: 169 LDWIYFGD---EVIVPKSIKRAKGNQSSKKSKKD 199 + I G+ E++ + + A+ + ++K Sbjct: 61 IPEIINGERKSEIMEKEVKEVAEAMSNYAAAEKS 94 >gi|296110966|ref|YP_003621347.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832497|gb|ADG40378.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 134 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 36/99 (36%), Gaps = 4/99 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R +Q+++A A++ +E+G + + + L + ++ S D + G Sbjct: 8 QQLKKYRTKLGMSQEDIADKLFISRQAISRWESGDATPDLTNLIKLTDIFDCSLDSLVLG 67 Query: 94 ----EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + + + N + G ++ Sbjct: 68 VPQQQTDTNGQDKIDNSEFTFDPRKGEYIRRHHSMNFWE 106 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D LK R GMSQ + L + +S +E G P++ K+ + Sbjct: 1 MMDILFPQQ-LKKYRTKLGMSQEDIADKLFISRQAISRWESGDATPDLTNLIKLTDIFDC 59 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 LD + G VP+ G S+ Sbjct: 60 SLDSLVLG----VPQQQTDTNGQDKIDNSE 85 >gi|253577026|ref|ZP_04854349.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843636|gb|EES71661.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 143 Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 37/75 (49%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K +RK + TQ+E+ N + +++ +ENG + + + + N + +S D++ Sbjct: 6 RLKQLRKEHKWTQEELGAKLNLTKVSISGYENGNRTPDMDTLIKISNVFNVSIDYLVGKS 65 Query: 95 VIDRRYEDVTNKKRL 109 + + + + L Sbjct: 66 DVRSVDSPIISGQVL 80 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK +RK+ +Q E G L + ++S YE G P++ KI V +D+ Sbjct: 1 MSFPYRLKQLRKEHKWTQEELGAKLNLTKVSISGYENGNRTPDMDTLIKISNVFNVSIDY 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|226322751|ref|ZP_03798269.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758] gi|225208912|gb|EEG91266.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758] Length = 313 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +K RK N TQ+++A V+ +E G+ + + L Y++ Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFEVSARTVSRWETGINMPDLSILVQLAEYYDVEIRE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYA-IGARLKS 120 + DGE + + K+ LD A +K Sbjct: 64 LLDGE--RSQTMNKEMKETLDKVAVYEEWVKQ 93 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IGA LK RK+K ++Q + + + T+S +E G +P++ ++ + Sbjct: 1 MDTKKIGAFLKQCRKEKNLTQEQLAEKFEVSARTVSRWETGINMPDLSILVQLAEYYDVE 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 IRELLDGE 68 >gi|325290667|ref|YP_004266848.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966068|gb|ADY56847.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 199 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+++RKA +Q+++A AV+ +E+ + + + ++++ D+I Sbjct: 2 NIADRIQNLRKAKAISQEDLADKVGVSRQAVSKWESEQSVPDLDKIIIMSEYFDVTTDYI 61 Query: 91 YDG 93 G Sbjct: 62 LKG 64 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R++++RK K +SQ + +G+ +S +E +++P++ + + D+ Sbjct: 1 MNIADRIQNLRKAKAISQEDLADKVGVSRQAVSKWESEQSVPDLDKIIIMSEYFDVTTDY 60 Query: 172 IYFGDEV 178 I G E Sbjct: 61 ILKGIEP 67 >gi|293374899|ref|ZP_06621200.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325843168|ref|ZP_08167854.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|292646502|gb|EFF64511.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325489412|gb|EGC91782.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 194 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG + D+RK N TQK++A N + ++ +E G+ + L + +S D I Sbjct: 5 KVGKLLYDLRKEKNMTQKQVAELMNISDKTISKWERGLGCPDVSLLPELSQIFGVSIDGI 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 GE+ ++ N +RL + Sbjct: 65 LSGEL-NQNPVVGGNMRRLKFFVCSQC 90 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 39/73 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G L +RK+K M+Q + +L+ + + T+S +E+G P++ ++ Q+ Sbjct: 1 MDCVKVGKLLYDLRKEKNMTQKQVAELMNISDKTISKWERGLGCPDVSLLPELSQIFGVS 60 Query: 169 LDWIYFGDEVIVP 181 +D I G+ P Sbjct: 61 IDGILSGELNQNP 73 >gi|229162462|ref|ZP_04290423.1| Helix-turn-helix domain protein [Bacillus cereus R309803] gi|228620941|gb|EEK77806.1| Helix-turn-helix domain protein [Bacillus cereus R309803] Length = 277 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N A++ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLGKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I V + LD++ V +S ++ G SK+ + Sbjct: 61 KLIMIGNVFEVSLDYLLK---ETVEQSNEKENGYYVSKEMAEGY 101 >gi|228475837|ref|ZP_04060551.1| DNA-binding protein [Staphylococcus hominis SK119] gi|314937266|ref|ZP_07844610.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] gi|228270113|gb|EEK11573.1| DNA-binding protein [Staphylococcus hominis SK119] gi|313654620|gb|EFS18368.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] Length = 118 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK RK NN +Q E+A N +V+ +E+G S+ + + + + ++ D + Sbjct: 2 ELANVIKKYRKLNNWSQDELADILNVSRQSVSKWESGKNYPSLDILVVMSDLFGVTLDQL 61 Query: 91 YDGEVI 96 G++ Sbjct: 62 VKGDIE 67 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K RK SQ E +L + ++S +E G+ P + + + LD Sbjct: 1 MELANVIKKYRKLNNWSQDELADILNVSRQSVSKWESGKNYPSLDILVVMSDLFGVTLDQ 60 Query: 172 IYFGDEVIVPKSI 184 + GD + + + Sbjct: 61 LVKGDIELKKQIL 73 >gi|150020298|ref|YP_001305652.1| XRE family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149792819|gb|ABR30267.1| transcriptional regulator, XRE family [Thermosipho melanesiensis BI429] Length = 244 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 35/75 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R + +Q+++A +++ +EN + + + +S ++ Sbjct: 2 DLGEKIKQLRLERDISQEQLAKRLGISRESISHYENNRIVPPVHILREIAKIFNVSVNYF 61 Query: 91 YDGEVIDRRYEDVTN 105 ++ E D+ + + Sbjct: 62 FEEEHYDKNVKGESE 76 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K +R ++ +SQ + K LG+ ++S+YE R +P + R+I ++ +++ Sbjct: 1 MDLGEKIKQLRLERDISQEQLAKRLGISRESISHYENNRIVPPVHILREIAKIFNVSVNY 60 Query: 172 IYFGDEVIVPKSIK 185 + +E K++K Sbjct: 61 FF--EEEHYDKNVK 72 >gi|327459409|gb|EGF05755.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] Length = 205 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + +E++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGIESVVQKEEEQSIKY 79 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIESVVQKEEEQS 76 >gi|306826019|ref|ZP_07459355.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431735|gb|EFM34715.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 166 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + ++ ++RK +Q+++A N +++ +E+G I + L ++++ D Sbjct: 1 MMKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIG 115 ++ E ++ +V+ ++ D Y Sbjct: 61 YLLLDENSEKGSTEVSLEEDKDKYYKE 87 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +L +RK+KG SQ + + + + ++S +E G+ +PEI+ ++ ++ + D Sbjct: 1 MMKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ DE S + + K K+ K Sbjct: 61 YLLL-DENSEKGSTEVSLEEDKDKYYKEVK 89 >gi|290894052|ref|ZP_06557026.1| phage protein [Listeria monocytogenes FSL J2-071] gi|290556396|gb|EFD89936.1| phage protein [Listeria monocytogenes FSL J2-071] Length = 100 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +R NKTQ+++A +A + ENG + + L N +E+S D++ Sbjct: 2 FGKKLKKLRNKTNKTQEDLANILGISRAAYSHIENGRNEPDMETIVKLANYFEVSTDYLL 61 Query: 92 DGEVIDRRYE----DVTNKKRLDPYAIGARLKSIRKDK 125 I + + I LK IR K Sbjct: 62 GRNEIGNSDLLAAHIDDDLTEEERIEIEKYLKFIRSQK 99 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G +LK +R +Q + +LG+ + S+ E GR P+++ K+ + D++ Sbjct: 1 MFGKKLKKLRNKTNKTQEDLANILGISRAAYSHIENGRNEPDMETIVKLANYFEVSTDYL 60 Query: 173 YFGDEV 178 +E+ Sbjct: 61 LGRNEI 66 >gi|154500025|ref|ZP_02038063.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC 29799] gi|150271623|gb|EDM98880.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC 29799] Length = 171 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RK N +Q+++A N A++ +E G + + + ++ S D++ + Sbjct: 5 EKLQRLRKVNGLSQEQLAEKLNVSRQAISKWEMG-AIPDMDNVIKISRFFDCSLDYLMNN 63 Query: 94 EVIDRRYEDVTNK 106 E + + ++ Sbjct: 64 EAEETSIKPFPSQ 76 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +RK G+SQ + + L + +S +E IP++ KI + LD+ Sbjct: 1 MTFSEKLQRLRKVNGLSQEQLAEKLNVSRQAISKWE-MGAIPDMDNVIKISRFFDCSLDY 59 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + SIK + +K+ K K + Sbjct: 60 LMNNE--AEETSIKPFPSQAAPQKTAKKKNHFH 90 >gi|167737064|ref|ZP_02409838.1| putative DNA-binding protein [Burkholderia pseudomallei 14] Length = 158 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 5/136 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWI 90 + R++ IRK +Q E+A A+ + E G + + L + + Sbjct: 12 LSERLRTIRKRAGLSQDELAARASLARPNLASVEQGRRANLRLSTLSRLADVLGVDVVDF 71 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + +D + + + A +K +R + G+SQ + + E Sbjct: 72 FCDRSVDEQQPVGEDATA----RVIANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEA 127 Query: 151 TIPEIKPARKIKQVTK 166 P + + + Sbjct: 128 ASPMVVDLQDLADALG 143 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWIYF 174 RL++IRK G+SQ E + L++ EQGR + ++ V + + Sbjct: 14 ERLRTIRKRAGLSQDELAARASLARPNLASVEQGRRANLRLSTLSRLADVLGVDVVDFFC 73 Query: 175 GDEVIVPKSI 184 V + + Sbjct: 74 DRSVDEQQPV 83 Score = 43.4 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 23/59 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K +R +Q+ +++ A++ + V EN S + L + + + Sbjct: 93 ANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEAASPMVVDLQDLADALGSQIPILLE 151 >gi|294792345|ref|ZP_06757493.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] gi|294457575|gb|EFG25937.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] Length = 128 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 4/121 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G RIK +RK + T E+ N SA++L+E S + N + +S D Sbjct: 1 MKTLGQRIKQLRKFQHLTGDELGEKLNVGRSAISLWETDARMPSAEMIKLIANVFNVSID 60 Query: 89 WIYDGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG-MSQIEFGKLLGMPNSTLS 144 ++ GE D Y D + + L+ + K +S+ E ++ + S L Sbjct: 61 YLLTGEHPTTDDGYYYDPEVAELAEEIKNDPDLRLLLDAKRSLSKSEMESIINITKSLLQ 120 Query: 145 N 145 Sbjct: 121 R 121 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R+K +RK + ++ E G+ L + S +S +E +P + + I V +D Sbjct: 1 MKTLGQRIKQLRKFQHLTGDELGEKLNVGRSAISLWETDARMPSAEMIKLIANVFNVSID 60 Query: 171 WIYFGD 176 ++ G+ Sbjct: 61 YLLTGE 66 >gi|228924686|ref|ZP_04087872.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229180805|ref|ZP_04308142.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|229191815|ref|ZP_04318789.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228591689|gb|EEK49534.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228602642|gb|EEK60126.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228834985|gb|EEM80438.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 157 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 39/96 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 IR+ +G RIK +RK N TQK++A + + +E+ L + + Sbjct: 10 IREVNDVIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFS 69 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 +S D++ V E VT K D +K Sbjct: 70 VSADYLLGRSVTGEPNEQVTPKDEKDIAKRMEEIKK 105 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+RK + ++Q + + +G+ + YE P K+ D++ Sbjct: 21 IKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYLLGRSV 80 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSS 203 P K + K ++ K Sbjct: 81 TGEPNEQVTPKDEKDIAKRMEEIKKD 106 >gi|325693715|gb|EGD35634.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|332364198|gb|EGJ41974.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 205 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RK +Q+ +A AV+ +E+ + + + + +E++ D++ Sbjct: 2 NLSDRIQYLRKVRGISQEGLAEKLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGIEPVVQKEEEQSIKH 79 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 39/76 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ + LG+ +S +E +++P++ + + D+ Sbjct: 1 MNLSDRIQYLRKVRGISQEGLAEKLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIEPVVQKEEEQS 76 >gi|229189224|ref|ZP_04316248.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876] gi|228594268|gb|EEK52063.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876] Length = 149 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + G Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRG 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + GDE + K I+ +K Sbjct: 61 LLRGDEELTQKVIEDSK 77 >gi|196038315|ref|ZP_03105624.1| immunity repressor protein [Bacillus cereus NVH0597-99] gi|225865525|ref|YP_002750903.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228916172|ref|ZP_04079742.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930568|ref|ZP_04093562.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229185777|ref|ZP_04312953.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|196030723|gb|EDX69321.1| immunity repressor protein [Bacillus cereus NVH0597-99] gi|225790340|gb|ACO30557.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228597689|gb|EEK55333.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|228829089|gb|EEM74732.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843370|gb|EEM88448.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 142 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N TQK++A + + +E+ L + + +S D++ Sbjct: 2 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 +V D + +T K D +K Sbjct: 62 GRDVTDETKKQLTPKDEKDIAKRMEEIKK 90 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 32/86 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+RK + ++Q + + +G+ + YE P K+ D++ D Sbjct: 6 IKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYLLGRDV 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSS 203 K K + K ++ K Sbjct: 66 TDETKKQLTPKDEKDIAKRMEEIKKD 91 >gi|322806814|emb|CBZ04383.1| DNA-binding protein [Clostridium botulinum H04402 065] Length = 92 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++R+ TQ+E+ N ++ +E+G SI + + N + +S D++ Sbjct: 2 FGDRLKELREEKEFTQEELGKFLNVSRQTISGYESGAIEPSISNLVKIANIFNVSLDYLL 61 Query: 92 DGEVIDRRYEDVTNKKR 108 K + Sbjct: 62 CRTKERYNLNLENKKNK 78 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK +R++K +Q E GK L + T+S YE G P I KI + LD++ Sbjct: 1 MFGDRLKELREEKEFTQEELGKFLNVSRQTISGYESGAIEPSISNLVKIANIFNVSLDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ +R N +KK+K+ Sbjct: 61 LC-------RTKERYNLNLENKKNKE 79 >gi|332654275|ref|ZP_08420019.1| transcriptional regulator, Cro/CI family [Ruminococcaceae bacterium D16] gi|332517361|gb|EGJ46966.1| transcriptional regulator, Cro/CI family [Ruminococcaceae bacterium D16] Length = 394 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ R++ RK TQ+E+A V+ +E+G + + L ++ D Sbjct: 4 QEFAQRLRQYRKNKGMTQQELADQLGVSNKTVSRWESG-SYPDVTTLVALARVLGVTVDE 62 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + D + R E + L Sbjct: 63 LLDPKAPVRTLEKSDWQNLL 82 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ RL+ RK+KGM+Q E LG+ N T+S +E + P++ + +V Sbjct: 1 MNEQEFAQRLRQYRKNKGMTQQELADQLGVSNKTVSRWES-GSYPDVTTLVALARVLGVT 59 Query: 169 LDWIY 173 +D + Sbjct: 60 VDELL 64 >gi|164687559|ref|ZP_02211587.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM 16795] gi|164603333|gb|EDQ96798.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM 16795] Length = 139 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 42/96 (43%), Gaps = 1/96 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K +RK+ +Q+E+AI N + ++ +E G+ + + + +E+S + Sbjct: 4 ENLKQLRKSKGLSQEELAIRLNVVRQTISKWEKGLSVPDADMLIKIADIFEVSVSELLGA 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGA-RLKSIRKDKGMS 128 ++ +++ +DV +K+ R + Sbjct: 64 KIEEKKEQDVNAVADQLMRVNEQLAIKNRRSHRVWK 99 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 39/86 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + LK +RK KG+SQ E L + T+S +E+G ++P+ KI + + + + Sbjct: 1 MLNENLKQLRKSKGLSQEELAIRLNVVRQTISKWEKGLSVPDADMLIKIADIFEVSVSEL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 + A +Q + +++ Sbjct: 61 LGAKIEEKKEQDVNAVADQLMRVNEQ 86 >gi|326804313|ref|YP_004322131.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651167|gb|AEA01350.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 328 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK +Q+E+A N +++ +E + L L + ++ D++ Sbjct: 3 LADKILHLRKQAGWSQEELAQQLNVSRQSISKWERAEAIPDLEKILDLARIFGVTTDYLI 62 Query: 92 DGEVIDRRYEDVTN 105 E+ Y Sbjct: 63 KDELDQVDYSAGDE 76 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + +RK G SQ E + L + ++S +E+ IP+++ + ++ D++ + Sbjct: 7 ILHLRKQAGWSQEELAQQLNVSRQSISKWERAEAIPDLEKILDLARIFGVTTDYLIKDE 65 >gi|251782746|ref|YP_002997049.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391376|dbj|BAH81835.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 257 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK +Q+ +A A++ +EN + L L N +E+S D++ Sbjct: 2 NFGEKLFKLRKEKGISQENLAEQIGTTRQAISKWENNQGFPEVEKLLQLSNVFEVSVDYL 61 Query: 91 YDGEVI 96 + Sbjct: 62 LKDDKT 67 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + +G +S +E + PE++ ++ V + +D+ Sbjct: 1 MNFGEKLFKLRKEKGISQENLAEQIGTTRQAISKWENNQGFPEVEKLLQLSNVFEVSVDY 60 Query: 172 IYFGDEVI 179 + D+ + Sbjct: 61 LLKDDKTV 68 >gi|331701987|ref|YP_004398946.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129330|gb|AEB73883.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 196 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +I+D R+ +Q+E+A ++ +E G I+ L L + +S D + Sbjct: 2 DIGNKIRDYREVRGFSQEELASKIYVSRQTISNWETGKQYPDIQNVLLLSVLFGVSVDEL 61 Query: 91 YDGEVIDRR 99 G++ + Sbjct: 62 IKGDLEAMK 70 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 37/79 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ R+ +G SQ E + + T+SN+E G+ P+I+ + + +D Sbjct: 1 MDIGNKIRDYREVRGFSQEELASKIYVSRQTISNWETGKQYPDIQNVLLLSVLFGVSVDE 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + GD + + K N Sbjct: 61 LIKGDLEAMKAKLSDKKVN 79 >gi|223984327|ref|ZP_03634469.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM 12042] gi|223963684|gb|EEF68054.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM 12042] Length = 647 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 13/110 (11%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I+ RKA TQ+++A AV+ +E G S+ L N + IS D + Sbjct: 2 KLAENIQRRRKAAGWTQEQLAQKCAVSRQAVSKWEAGQSVPSLDKLRQLANCFGISVDEL 61 Query: 91 YDG----EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E D + LD R+ + + Sbjct: 62 VQDDPAAEPADAHQTGSPSLVELD---------QARQTRQRRHGWTAAAI 102 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ RK G +Q + + + +S +E G+++P + R++ +D Sbjct: 1 MKLAENIQRRRKAAGWTQEQLAQKCAVSRQAVSKWEAGQSVPSLDKLRQLANCFGISVDE 60 Query: 172 IYFGDEVIVP 181 + D P Sbjct: 61 LVQDDPAAEP 70 >gi|291526868|emb|CBK92454.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 190 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G+ +K++RK TQ+E A + ++ +E G I + + + +S Sbjct: 3 QKKIGSFLKELRKEMGITQEEFAEKLDVSSRTISRWETGANMPDISLLVNIAEIFNVSIP 62 Query: 89 WIYDGE 94 I +GE Sbjct: 63 EIINGE 68 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG+ LK +RK+ G++Q EF + L + + T+S +E G +P+I I ++ Sbjct: 1 MNQKKIGSFLKELRKEMGITQEEFAEKLDVSSRTISRWETGANMPDISLLVNIAEIFNVS 60 Query: 169 LDWIYFGD---EVIVPKSIKRAKGNQSSKKSKK 198 + I G+ E++ ++ K A+ ++K Sbjct: 61 IPEIINGERKSEIMEKEAKKVAEAMSDYATAEK 93 >gi|228922337|ref|ZP_04085644.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837392|gb|EEM82726.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 277 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLVKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ +++ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNENVD 89 >gi|327441616|dbj|BAK17981.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 260 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK +Q+ +A N A++ +ENG L + N +E+S D++ Sbjct: 2 EFGEKLFKLRKEKEYSQEALAEKLNTSRQAISKWENGQGFPETEKILMIGNIFEVSIDYL 61 Query: 91 YDGEVIDRRYED 102 V + + Sbjct: 62 LKDSVENNEGNE 73 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+K SQ + L +S +E G+ PE + I + + +D+ Sbjct: 1 MEFGEKLFKLRKEKEYSQEALAEKLNTSRQAISKWENGQGFPETEKILMIGNIFEVSIDY 60 Query: 172 IYFG 175 + Sbjct: 61 LLKD 64 >gi|324990276|gb|EGC22214.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] Length = 205 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + +E++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGIESVVQKEEEQSIKY 79 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIESVVQKEEEQS 76 >gi|257062841|ref|YP_003142513.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790494|gb|ACV21164.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 369 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT I +RK TQ +A+ +++V+ +ENG I + ++I+ D + Sbjct: 7 IGTTIYRLRKEARLTQDGLAMHLGVTKASVSKWENGQSYPDIELLPKIAAYFDITIDQLI 66 Query: 92 DGEVIDRR 99 E R Sbjct: 67 GYEPQMSR 74 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +RK+ ++Q LG+ +++S +E G++ P+I+ KI +D + + Sbjct: 11 IYRLRKEARLTQDGLAMHLGVTKASVSKWENGQSYPDIELLPKIAAYFDITIDQLIGYEP 70 Query: 178 VIVPKSIKR 186 + I R Sbjct: 71 QMSRVGIAR 79 >gi|294813544|ref|ZP_06772187.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|326442049|ref|ZP_08216783.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326143|gb|EFG07786.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R+K +R T +A +S ++ E+G S+ L + Y++ D + Sbjct: 40 EVGPRLKRLRAERGITLAALAETTGISKSTLSRLESGGRRPSLELLLPISQAYQVPLDEL 99 Query: 91 Y 91 Sbjct: 100 V 100 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R ++G++ + G+ STLS E G P ++ I Q + LD + E Sbjct: 45 LKRLRAERGITLAALAETTGISKSTLSRLESGGRRPSLELLLPISQAYQVPLDELVGAPE 104 Query: 178 VIVPKS 183 V P+ Sbjct: 105 VGDPRV 110 >gi|257062849|ref|YP_003142521.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790502|gb|ACV21172.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 459 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R+ ++R+A +Q+E+A AV+ +E S + L Y ++ D + Sbjct: 4 EVAERLAELRRAKGLSQEELAHELGLSRQAVSKWERAESSPDTDNLIALAKLYGMTLDEL 63 Query: 91 YDGEVIDRRYED 102 G + D Sbjct: 64 VHGPAEAVGHAD 75 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y + RL +R+ KG+SQ E LG+ +S +E+ + P+ + ++ LD Sbjct: 2 NYEVAERLAELRRAKGLSQEELAHELGLSRQAVSKWERAESSPDTDNLIALAKLYGMTLD 61 Query: 171 WIYFG 175 + G Sbjct: 62 ELVHG 66 >gi|167036463|ref|YP_001664041.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114889|ref|YP_004185048.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855297|gb|ABY93705.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927980|gb|ADV78665.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 129 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK++RK TQKE+A + AV +E+G + + + + +S D++ Sbjct: 2 LGKRIKELRKKKGITQKELASYLGISDRAVGYYESGQRTPPPDILQKIADFFNVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 G D + D + + +++ + + Sbjct: 62 -GRTNIYNPADEITEAVFDDPELLEFWRELKEREDLKL 98 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+K +RK KG++Q E LG+ + + YE G+ P +KI D++ Sbjct: 1 MLGKRIKELRKKKGITQKELASYLGISDRAVGYYESGQRTPPPDILQKIADFFNVSTDYL 60 Query: 173 YFGDEVIVP 181 + P Sbjct: 61 LGRTNIYNP 69 >gi|329941606|ref|ZP_08290871.1| regulatory protein [Streptomyces griseoaurantiacus M045] gi|329299323|gb|EGG43223.1| regulatory protein [Streptomyces griseoaurantiacus M045] Length = 229 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 + + + + +VG R++ IRK T ++ S ++ E+G+ S+ L Sbjct: 34 DVPGSDDTDEVLAEVGPRLRRIRKERGATLAALSEATGISVSTLSRLESGLRKPSLELLL 93 Query: 78 YLRNEYEISFDWIY 91 + +++ D + Sbjct: 94 PIARAHQVPLDELV 107 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+ IRK++G + + G+ STLS E G P ++ I + + LD + Sbjct: 52 LRRIRKERGATLAALSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDELVGAPR 111 Query: 175 -GDEVIVPKSIKR 186 GD + + I R Sbjct: 112 VGDPRVRAEPIAR 124 >gi|240147061|ref|ZP_04745662.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] gi|257200784|gb|EEU99068.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] Length = 334 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I + RK N +Q+E+A + AV+ +E+ ++ + L +S D++ Sbjct: 3 LAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEILGVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDP 111 E + + D Sbjct: 63 KDECETPQLIEGVEPSNKDF 82 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ RK G SQ E + L + +S +E ++IP+++ ++ ++ D+ Sbjct: 1 MILAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEILGVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAK-GNQSSKKSKKDKKSSN 204 + DE P+ I+ + N+ K + +N Sbjct: 61 LLK-DECETPQLIEGVEPSNKDFPLKKVSMEEAN 93 >gi|167746879|ref|ZP_02419006.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662] gi|317471690|ref|ZP_07931031.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA] gi|167653839|gb|EDR97968.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662] gi|316900794|gb|EFV22767.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA] Length = 194 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G IK +RK TQ ++A N + ++ +E G+ I + L +++ + Sbjct: 4 QKIGKLIKTLRKEKQLTQMQLAEHMNISDKTISKWERGLGCPDISFFPKLSGVFDVDLEK 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + G + D N K + Y Sbjct: 64 LLSGRL-DVNEVLGGNMKHMQFYICPNC 90 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 38/67 (56%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG +K++RK+K ++Q++ + + + + T+S +E+G P+I K+ V Sbjct: 1 MDSQKIGKLIKTLRKEKQLTQMQLAEHMNISDKTISKWERGLGCPDISFFPKLSGVFDVD 60 Query: 169 LDWIYFG 175 L+ + G Sbjct: 61 LEKLLSG 67 >gi|229168347|ref|ZP_04296072.1| Helix-turn-helix domain protein [Bacillus cereus AH621] gi|228615173|gb|EEK72273.1| Helix-turn-helix domain protein [Bacillus cereus AH621] Length = 277 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFAYNLVKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFG 175 I V + LD++ Sbjct: 61 KLIMIGNVFEVSLDYLLKE 79 >gi|170729039|ref|YP_001763065.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814386|gb|ACA88970.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 327 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK +Q+E+A +V+ +E+ + + L + +E+S D++ Sbjct: 3 LAEKIIRLRKQLGWSQEELAEKMAISRQSVSKWESANSIPDLNKIIKLADIFEVSTDFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 E Y D L+ ++ Sbjct: 63 KDEYEANSYNDEPKPSNLNQVSLEQ 87 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ +RK G SQ E + + + ++S +E +IP++ K+ + + D+ Sbjct: 1 MILAEKIIRLRKQLGWSQEELAEKMAISRQSVSKWESANSIPDLNKIIKLADIFEVSTDF 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLKDE 65 >gi|40445383|ref|NP_954843.1| repressor protein [Gordonia westfalica] gi|40217413|emb|CAE09164.1| putative repressor protein [Gordonia westfalica] Length = 143 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 51/136 (37%), Gaps = 18/136 (13%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+ +R N + ++A AN S ++ +E G + + + +S + Sbjct: 8 RLNQLRVDRNFSLSDLARLANIGRSTLHHWETGHATPQVDLLARAADTLGVSIGDLVHIP 67 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 +R D +R +G++Q + G+ +P +T+ E+G Sbjct: 68 EHERFPGD------------------LRILRGLTQPQLGREAEVPTATVGAIERGEVALT 109 Query: 155 IKPARKIKQVTKKHLD 170 + A+++ ++ Sbjct: 110 EEYAQRLAAALDVPIE 125 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +R D+ S + +L + STL ++E G P++ + + + Sbjct: 9 LNQLRVDRNFSLSDLARLANIGRSTLHHWETGHATPQVDLLARAADTLGVSIGDLV 64 >gi|284802769|ref|YP_003414634.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284995911|ref|YP_003417679.1| transcriptional regulator [Listeria monocytogenes 08-5923] gi|284058331|gb|ADB69272.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284061378|gb|ADB72317.1| transcriptional regulator [Listeria monocytogenes 08-5923] Length = 101 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 4/98 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +R NKTQ+++A +A + ENG + + L N +E+S D++ Sbjct: 2 FGDKLKMLRSKTNKTQEDIANILGVSRAAYSHIENGRNEPDMETIVKLANYFEVSTDYLL 61 Query: 92 DGEVIDRRYE----DVTNKKRLDPYAIGARLKSIRKDK 125 + ID + + I LK IR K Sbjct: 62 GRDEIDNSDLLAAHIDDDLTEDERIEIEKYLKFIRSQK 99 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G +LK +R +Q + +LG+ + S+ E GR P+++ K+ + D++ Sbjct: 1 MFGDKLKMLRSKTNKTQEDIANILGVSRAAYSHIENGRNEPDMETIVKLANYFEVSTDYL 60 Query: 173 YFGDEV 178 DE+ Sbjct: 61 LGRDEI 66 >gi|225575279|ref|ZP_03783889.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM 10507] gi|225037475|gb|EEG47721.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM 10507] Length = 341 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK N +Q+E+A +++ +E + + + + L +++S D++ Sbjct: 3 LSEKILTLRKKNGWSQEELAEKCGVSRQSISKWEGNLSTPELSKIVLLSELFQVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS--IRKDKGMSQ--IEFGKLL 136 D + + T+ + A L+ + + Q + K + Sbjct: 63 K---EDVQPQTDTDAELPPMEAPSHSLRQVTLAEATAFIQAREQAAKKM 108 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ ++RK G SQ E + G+ ++S +E + PE+ + ++ + D+ Sbjct: 1 MLLSEKILTLRKKNGWSQEELAEKCGVSRQSISKWEGNLSTPELSKIVLLSELFQVSTDY 60 Query: 172 IYFGD 176 + D Sbjct: 61 LLKED 65 >gi|325261431|ref|ZP_08128169.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032885|gb|EGB94162.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 95 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 42/93 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G +IK +RK N TQK++A A SA++ +E G S + L + +S D++ Sbjct: 3 DFGKKIKQLRKEYNFTQKQLASLAGVAVSAISAYEAGNRYPSYDVLISLSRIFHVSTDYL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 E ++ ++ ++ L RK Sbjct: 63 LGLEKMEVVDVSGLDEHEVEVVRQMVNLLIKRK 95 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++K +RK+ +Q + L G+ S +S YE G P + ++ D Sbjct: 1 MVDFGKKIKQLRKEYNFTQKQLASLAGVAVSAISAYEAGNRYPSYDVLISLSRIFHVSTD 60 Query: 171 WIYFGDEVIV 180 ++ +++ V Sbjct: 61 YLLGLEKMEV 70 >gi|322375072|ref|ZP_08049586.1| putative helix-turn-helix protein [Streptococcus sp. C300] gi|321280572|gb|EFX57611.1| putative helix-turn-helix protein [Streptococcus sp. C300] Length = 165 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 40/86 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G I + L ++++ D++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 E ++ V ++ D Y A Sbjct: 62 LLDENFEKGSTAVILEEGKDKYYKEA 87 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PEI+ ++ ++ + D+ Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 172 IYFGD--EVIVPKSIKRAKGNQSSKKSK 197 + + E I ++ K++K Sbjct: 61 LLLDENFEKGSTAVILEEGKDKYYKEAK 88 >gi|168206199|ref|ZP_02632204.1| transcriptional regulator, MerR family [Clostridium perfringens E str. JGS1987] gi|170662344|gb|EDT15027.1| transcriptional regulator, MerR family [Clostridium perfringens E str. JGS1987] Length = 263 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 6/132 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RIK RKA N +Q E+A + +A++ +E +I + + ++ D + Sbjct: 2 NVGDRIKYFRKAENLSQDELASKSGLSRNAISNYELNKRQPNIVVLKKIADALKVDIDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 TN A LK R++K +SQ + LL + + + E G Sbjct: 62 IIKTDSALVSHYKTNLN-----ADFKSLKKYREEKKLSQEQLSYLLDIDINLIKRLENGE 116 Query: 151 TI-PEIKPARKI 161 P A+++ Sbjct: 117 QERPNAIIAKQL 128 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+K RK + +SQ E G+ + +SNYE + P I +KI K +D Sbjct: 1 MNVGDRIKYFRKAENLSQDELASKSGLSRNAISNYELNKRQPNIVVLKKIADALKVDIDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN--QSSKKSKKDKK 201 + + + K +S KK +++KK Sbjct: 61 LIIKTDSALVSHYKTNLNADFKSLKKYREEKK 92 >gi|331091208|ref|ZP_08340049.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404655|gb|EGG84194.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium 2_1_46FAA] Length = 219 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK R+ +Q+E+A+ + + V+ +E + + + + E+S + Sbjct: 2 IGENIKKYRRRKGMSQEELAVKLHVVRQTVSKWEQALSVPDAEVLMRMASLLEVSVSTLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 E+ D E +T K + +L I++++ + Q G+ +G+ Sbjct: 62 GSEIEDENSEHLTEK----LAQLNEQLAEIQREQ-IVQKRAGEKIGV 103 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +K R+ KGMSQ E L + T+S +EQ ++P+ + ++ + + + + Sbjct: 1 MIGENIKKYRRRKGMSQEELAVKLHVVRQTVSKWEQALSVPDAEVLMRMASLLEVSVSTL 60 Query: 173 Y---FGDEVIVPKSIKRAKGNQSSKKSKKD 199 DE + K A+ N+ + +++ Sbjct: 61 LGSEIEDENSEHLTEKLAQLNEQLAEIQRE 90 >gi|229134433|ref|ZP_04263246.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196] gi|228649054|gb|EEL05076.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196] Length = 277 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLGKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ +++ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNENVD 89 >gi|73663641|ref|YP_302422.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496156|dbj|BAE19477.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 117 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 34/66 (51%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G++ K+ R+ + +Q E+A N +++ +E SI + + + ++IS D + Sbjct: 2 EIGSKTKEKREQKHWSQDELAEILNISRQSISKWELNKVYPSIDMLIKMSDLFDISLDEL 61 Query: 91 YDGEVI 96 G+ Sbjct: 62 IKGDKQ 67 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K R+ K SQ E ++L + ++S +E + P I K+ + LD + GD+ Sbjct: 8 KEKREQKHWSQDELAEILNISRQSISKWELNKVYPSIDMLIKMSDLFDISLDELIKGDKQ 67 Query: 179 IVPKSIKRAKGNQS 192 I+ + S Sbjct: 68 FKKTIIETYQDPVS 81 >gi|225570293|ref|ZP_03779318.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM 15053] gi|225160825|gb|EEG73444.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM 15053] Length = 262 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 5/128 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +RK+ N TQ+++A + +A++ +E+G SI + + IS D + Sbjct: 63 EFNEKLQKLRKSKNLTQEQLAEILSVSRTAISKWESGRGYPSIDSLKEISKFFTISLDDL 122 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-----MPNSTLSN 145 E I ++ T++K + L FG+ +G + + + Sbjct: 123 LSSEEILNAAQEDTDRKIHHFIDLTFGLLDCSVASFFFLPIFGQNVGNVIESVSLLSFTK 182 Query: 146 YEQGRTIP 153 E IP Sbjct: 183 AESYIIIP 190 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 38/74 (51%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ + +L+ +RK K ++Q + ++L + + +S +E GR P I ++I + Sbjct: 56 EEGMAKLEFNEKLQKLRKSKNLTQEQLAEILSVSRTAISKWESGRGYPSIDSLKEISKFF 115 Query: 166 KKHLDWIYFGDEVI 179 LD + +E++ Sbjct: 116 TISLDDLLSSEEIL 129 >gi|282865716|ref|ZP_06274766.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559360|gb|EFB64912.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 199 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 29/80 (36%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 PE+ VG R++ +RK T +A S ++ E+G S+ L + Sbjct: 9 PELDAVLTGVGPRLRRLRKDRGVTLAALAEATGISVSTLSRLESGGRRPSLELLLPIARA 68 Query: 83 YEISFDWIYDGEVIDRRYED 102 +E+ D + Sbjct: 69 HEVPLDDLVGAPPPGDPRVR 88 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+ +RKD+G++ + G+ STLS E G P ++ I + + LD + Sbjct: 22 LRRLRKDRGVTLAALAEATGISVSTLSRLESGGRRPSLELLLPIARAHEVPLDDLVGAPP 81 Query: 175 -GDEVIVPKSI 184 GD + K I Sbjct: 82 PGDPRVRAKPI 92 >gi|257877769|ref|ZP_05657422.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811935|gb|EEV40755.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 74 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ N+ TQ ++A N +S + +ENG I+ + L N Y S D++ + Sbjct: 3 QRIRDLREDNDLTQHQIATLLNISQSTYSRYENGELEIPIQTLIKLANYYNTSIDYLVNM 62 Query: 94 EVIDRRYEDVTN 105 + Y+ + Sbjct: 63 TDVRTSYKANEH 74 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D ++Q + LL + ST S YE G I+ K+ +D++ Sbjct: 1 MFQRIRDLREDNDLTQHQIATLLNISQSTYSRYENGELEIPIQTLIKLANYYNTSIDYLV 60 >gi|297543547|ref|YP_003675849.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841322|gb|ADH59838.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 129 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK++RK TQKE+A+ + AV +E+G + + + + +S D++ Sbjct: 2 LGERIKELRKKKGVTQKELALYLGVSDRAVGYYESGQRTPPPDILQKIADFFNVSVDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDP--YAIGARLKSIRKDKGMSQIEF 132 + +++T DP + LK R+D + + Sbjct: 62 GRTGVYNPTDEITEAISDDPELFEFWNTLKE-REDLKLLFKQT 103 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+K +RK KG++Q E LG+ + + YE G+ P +KI +D++ Sbjct: 1 MLGERIKELRKKKGVTQKELALYLGVSDRAVGYYESGQRTPPPDILQKIADFFNVSVDYL 60 Query: 173 YFGDEVIVP 181 V P Sbjct: 61 LGRTGVYNP 69 >gi|240144766|ref|ZP_04743367.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203287|gb|EEV01572.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 94 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K +R N TQK++A SA++ +E+ + + + +S D++ Sbjct: 2 NLGEKLKQLRLEKNLTQKQLADRLGVAISAISSYESDTRCPTFDTLIKYARIFHVSTDYL 61 Query: 91 YDGEV 95 E Sbjct: 62 LGLEP 66 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +LK +R +K ++Q + LG+ S +S+YE P K ++ D+ Sbjct: 1 MNLGEKLKQLRLEKNLTQKQLADRLGVAISAISSYESDTRCPTFDTLIKYARIFHVSTDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|229012804|ref|ZP_04169973.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] gi|228748485|gb|EEL98341.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] Length = 262 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 2 EFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYL 61 Query: 91 YD 92 Sbjct: 62 LK 63 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MEFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + +S ++ G SK+ + Sbjct: 61 LLK---ETAEQSNEKENGYYVSKEMAEGY 86 >gi|108758632|ref|YP_630926.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] gi|108462512|gb|ABF87697.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] Length = 116 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 12/122 (9%) Query: 25 IRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + K +G RI+++R TQ+E+A A S +++ E G + L N Sbjct: 1 MSDLGKRIGQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVPHVETLAALANA 60 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 +S ++ G + + D + +G++ + +LLG+ Sbjct: 61 LGVSLGELFTGTEQTLAQTEDLLRPLSDFA----------RARGLTARDVDRLLGVARVM 110 Query: 143 LS 144 S Sbjct: 111 FS 112 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDK--GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R + +Q E + + S LS E+G +P ++ + L ++ Sbjct: 10 QRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVPHVETLAALANALGVSLGELF 69 Query: 174 FGDEVIVPKS 183 G E + ++ Sbjct: 70 TGTEQTLAQT 79 >gi|313885249|ref|ZP_07819001.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619940|gb|EFR31377.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 371 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Y + VG +IK RK TQ+ +A SAV+ +E G + L + ++IS Sbjct: 2 NYIQAVGPQIKIFRKQKGLTQEALAEALGVTVSAVSKWERGQTLPDLPTLLEIAQFFQIS 61 Query: 87 FDWIYDGEVID 97 D ++ EV Sbjct: 62 LDVLFKYEVKS 72 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 45/85 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G ++K RK KG++Q + LG+ S +S +E+G+T+P++ +I Q + LD + Sbjct: 6 AVGPQIKIFRKQKGLTQEALAEALGVTVSAVSKWERGQTLPDLPTLLEIAQFFQISLDVL 65 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSK 197 + + + + Q KK + Sbjct: 66 FKYEVKSLSIKDWEKEIKQLIKKQE 90 >gi|229071129|ref|ZP_04204355.1| Helix-turn-helix domain protein [Bacillus cereus F65185] gi|228712069|gb|EEL64018.1| Helix-turn-helix domain protein [Bacillus cereus F65185] Length = 277 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MSTYNLGKKTKGGTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ +++ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNENVD 89 >gi|160880106|ref|YP_001559074.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428772|gb|ABX42335.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 268 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 28/69 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I R ++ +Q ++A +++ +E G + + L +++S D + Sbjct: 2 KLGEKIVMFRTEHHLSQGDLAEKLGVSRQSISKWETGGSVPDLDKLIALSELFDVSLDNL 61 Query: 91 YDGEVIDRR 99 + Sbjct: 62 VKDQEPKIN 70 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ R + +SQ + + LG+ ++S +E G ++P++ + ++ LD Sbjct: 1 MKLGEKIVMFRTEHHLSQGDLAEKLGVSRQSISKWETGGSVPDLDKLIALSELFDVSLDN 60 Query: 172 IYFGDEV 178 + E Sbjct: 61 LVKDQEP 67 >gi|257871444|ref|ZP_05651097.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257805608|gb|EEV34430.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 121 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 4/108 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R N+TQ+++A +A + FEN + L + +S D++ Sbjct: 13 LGERLKALRIGMNQTQQQIADHLGITRAAYSHFENDRNEPDGETIVKLAELFHVSTDYLL 72 Query: 92 DGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIEFGKL 135 ID + + +D +++ I + + Sbjct: 73 GRHAIDNFTQPSKRVQTVAAHIDENVTDEQMEDILNYIDFIKQRHAQK 120 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RLK++R +Q + LG+ + S++E R P+ + K+ ++ D++ Sbjct: 12 MLGERLKALRIGMNQTQQQIADHLGITRAAYSHFENDRNEPDGETIVKLAELFHVSTDYL 71 Query: 173 Y 173 Sbjct: 72 L 72 >gi|163941236|ref|YP_001646120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863433|gb|ABY44492.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 262 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIK 185 + +++ Sbjct: 61 LLKETAEQSNENVD 74 >gi|295425417|ref|ZP_06818113.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] gi|295064868|gb|EFG55780.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] Length = 143 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 34/83 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I +R +Q+++A N +V+ +E+G + + L + +S D++ Sbjct: 15 NLNQKITQLRNDKKWSQEDLAEKINVSRQSVSKWESGQTKPDLDKIIVLSEIFNVSTDYL 74 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 + + + Y+ Sbjct: 75 LKDDEKEINNASTNKHRFNFSYS 97 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + + ++ +R DK SQ + + + + ++S +E G+T P++ Sbjct: 3 FSKIKLSEVTSMNLNQKITQLRNDKKWSQEDLAEKINVSRQSVSKWESGQTKPDLDKIIV 62 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + ++ D++ DE K I A N+ Sbjct: 63 LSEIFNVSTDYLLKDDE----KEINNASTNK 89 >gi|270291965|ref|ZP_06198180.1| conserved hypothetical protein [Streptococcus sp. M143] gi|270279493|gb|EFA25335.1| conserved hypothetical protein [Streptococcus sp. M143] Length = 165 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 45/106 (42%), Gaps = 2/106 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G I + L ++++ D++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E ++ V ++ D Y +KS + + + Sbjct: 62 LLDENSEKASTAVILEEDKDKY--YKEVKSYGLWQMIYIFVLALAI 105 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PEI+ ++ ++ + D+ Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 172 IYFGD--EVIVPKSIKRAKGNQSSKKSK 197 + + E I ++ K+ K Sbjct: 61 LLLDENSEKASTAVILEEDKDKYYKEVK 88 >gi|257791416|ref|YP_003182022.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475313|gb|ACV55633.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 205 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G ++K +R TQ+++A +AV+ +E G S ++ + +++S D + Sbjct: 2 DFGEKLKALRTERGLTQEQLAAKLYVSRTAVSKWETGGGSPNLDSLQVVARLFDVSVDDL 61 Query: 91 YDGEV 95 + Sbjct: 62 LSTDD 66 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 41/82 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK++R ++G++Q + L + + +S +E G P + + + ++ +D Sbjct: 1 MDFGEKLKALRTERGLTQEQLAAKLYVSRTAVSKWETGGGSPNLDSLQVVARLFDVSVDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + D++IV +R +SS Sbjct: 61 LLSTDDLIVLARDERRSTARSS 82 >gi|295094125|emb|CBK83216.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 242 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+RI++ RK Q+E A AV+ +E + + + ++ + Sbjct: 4 IGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKAYPDLDRLVCICEILDVQVGELI 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + + + LK++R Sbjct: 64 YGKGDEPEAPEEVSGDGTSTNNAV-HLKNLR 93 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG+R++ RK G++Q EF + +G+ +S +E+ + P++ I ++ + Sbjct: 1 MLLIGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKAYPDLDRLVCICEILDVQVG 60 Query: 171 WIYF--GDEVIVPKSI 184 + + GDE P+ + Sbjct: 61 ELIYGKGDEPEAPEEV 76 >gi|42780950|ref|NP_978197.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42736871|gb|AAS40805.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 142 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A A+ +EN I + L Y ++ D + Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAIYRWENNKSYPDIDNLILLSEMYNVTLDALI 62 Query: 92 DGEVIDRRY 100 G + Sbjct: 63 KGNQNMKEK 71 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 37/71 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYRWENNKSYPDIDNLILLSEMYNVTLDA 60 Query: 172 IYFGDEVIVPK 182 + G++ + K Sbjct: 61 LIKGNQNMKEK 71 >gi|163941382|ref|YP_001646266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863579|gb|ABY44638.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 142 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N TQK++A + + +E+ L + + +S D++ Sbjct: 2 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 V D+ E +T K D +K Sbjct: 62 GRAVTDQPKEQLTQKDGKDIAKRMEEIKR 90 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+RK + ++Q + + +G+ + YE P K+ D++ Sbjct: 6 IKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYLLGRAV 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 PK K + K ++ K Sbjct: 66 TDQPKEQLTQKDGKDIAKRMEEIK 89 >gi|228952237|ref|ZP_04114326.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807365|gb|EEM53895.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 146 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K +R++ +Q+++A A+ +EN I + L Y ++ D + Sbjct: 2 NLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYKWENDKSYPDIDNLILLSEMYNVTLDEL 61 Query: 91 YDGEVI 96 G Sbjct: 62 IKGNQD 67 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MNLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + G++ K A+ K Sbjct: 61 LIKGNQDFKKKIHSDAEDEDFEK 83 >gi|56963509|ref|YP_175240.1| transcriptional repressor of PBSX genes [Bacillus clausii KSM-K16] gi|56909752|dbj|BAD64279.1| transcriptional repressor of PBSX genes [Bacillus clausii KSM-K16] Length = 101 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +R+K+ R T KE+ N +S ++ +ENG + L + + +S D++ Sbjct: 2 FASRLKECRIKKQLTMKELGQALNMAQSTISGYENGTRKPDLDNLARLADYFNVSTDYLV 61 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + D + + L+ RK Sbjct: 62 GRLDSNDSFILHSDQLTSDEKLFLADCLQLYRKH 95 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +RLK R K ++ E G+ L M ST+S YE G P++ ++ D++ Sbjct: 1 MFASRLKECRIKKQLTMKELGQALNMAQSTISGYENGTRKPDLDNLARLADYFNVSTDYL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|295094523|emb|CBK83614.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 97 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R AN TQKE+A + ++ +EN S+ L + + S D++ Sbjct: 2 IGEQLRTLRTANKMTQKELAGELSVAFQTISNWENNSIDPSVSMILRIAEYFNCSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 G+ +Y D T + K K Sbjct: 62 KGDDSSAKYIDTTQLTEHQHAQLLGLAKEFSKLNK 96 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +L+++R M+Q E L + T+SN+E P + +I + D++ Sbjct: 1 MIGEQLRTLRTANKMTQKELAGELSVAFQTISNWENNSIDPSVSMILRIAEYFNCSTDYL 60 Query: 173 YFGDEVIVP 181 GD+ Sbjct: 61 LKGDDSSAK 69 >gi|317490116|ref|ZP_07948605.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325833610|ref|ZP_08166059.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316910821|gb|EFV32441.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325485534|gb|EGC88003.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 380 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 27/74 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+ + RK +Q+ +A AV+ +E S + L Y +S D + Sbjct: 4 EIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSLDDL 63 Query: 91 YDGEVIDRRYEDVT 104 + R Sbjct: 64 LYVDEEIRDDVTFE 77 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RL RK G+SQ LG+ +S +E+ + P+ + Q+ LD + Sbjct: 4 EIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSLDDL 63 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + DE I A + ++++++ Sbjct: 64 LYVDEEIRDDVTFEAADRAAKRQAEQE 90 >gi|257868622|ref|ZP_05648275.1| DNA binding protein [Enterococcus gallinarum EG2] gi|257802786|gb|EEV31608.1| DNA binding protein [Enterococcus gallinarum EG2] Length = 172 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K R+ + +Q +A +++ +ENG I + L Y++S D + Sbjct: 3 LAEQLKLYREKSGLSQASVAEELKISRQSISKWENGRGYPDIDNLVLLSKLYQVSIDELL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + N + D + + Sbjct: 63 QENEQLKEQIQKNNVEIEDKKKKLSFI 89 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +LK R+ G+SQ + L + ++S +E GR P+I + ++ + +D Sbjct: 1 MALAEQLKLYREKSGLSQASVAEELKISRQSISKWENGRGYPDIDNLVLLSKLYQVSIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + +E + + K + KK Sbjct: 61 LLQENEQLKEQIQKNNVEIEDKKKK 85 >gi|257792196|ref|YP_003182802.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476093|gb|ACV56413.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 380 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 27/74 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+ + RK +Q+ +A AV+ +E S + L Y +S D + Sbjct: 4 EIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSLDDL 63 Query: 91 YDGEVIDRRYEDVT 104 + R Sbjct: 64 LYVDEEIRDDVTFE 77 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RL RK G+SQ LG+ +S +E+ + P+ + Q+ LD + Sbjct: 4 EIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSLDDL 63 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + DE I A + ++++++ Sbjct: 64 LYVDEEIRDDVTFEAADRAAKRQAEQE 90 >gi|160946034|ref|ZP_02093260.1| hypothetical protein FAEPRAM212_03567 [Faecalibacterium prausnitzii M21/2] gi|158443765|gb|EDP20770.1| hypothetical protein FAEPRAM212_03567 [Faecalibacterium prausnitzii M21/2] Length = 95 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI +R +Q+++A + E G + S++ + + + +S D++ Sbjct: 8 IGNRIFTLRTNAKLSQEKLAEKLGVSHRHLGDLERGSSNGSVKILIDIAEYFHVSMDYLL 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G R + +D L Sbjct: 68 LGRDPSRDQFQNELQAAIDHLEKIKGL 94 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 37/76 (48%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 DP AIG R+ ++R + +SQ + + LG+ + L + E+G + +K I + Sbjct: 1 MSFDPNAIGNRIFTLRTNAKLSQEKLAEKLGVSHRHLGDLERGSSNGSVKILIDIAEYFH 60 Query: 167 KHLDWIYFGDEVIVPK 182 +D++ G + + Sbjct: 61 VSMDYLLLGRDPSRDQ 76 >gi|288904450|ref|YP_003429671.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306830483|ref|ZP_07463653.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977446|ref|YP_004287162.1| hypothetical protein SGGBAA2069_c02460 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731175|emb|CBI12723.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304427508|gb|EFM30610.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177374|emb|CBZ47418.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 208 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 I ++RK NN +Q E A + V+ +ENG + + + + IS D + E Sbjct: 2 NINELRKKNNLSQDEFANLFHVSRQTVSSWENGKSYPDVEMLIKISQHFGISVDDLVKNE 61 Query: 95 VIDRRYEDVTNKKRL 109 + K RL Sbjct: 62 MHLPTSNKPKTKSRL 76 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + +RK +SQ EF L + T+S++E G++ P+++ KI Q +D + Sbjct: 1 MNINELRKKNNLSQDEFANLFHVSRQTVSSWENGKSYPDVEMLIKISQHFGISVDDLVKN 60 Query: 176 DEVIVPKSIKRAKGN 190 + + + + K Sbjct: 61 EMHLPTSNKPKTKSR 75 >gi|293364378|ref|ZP_06611104.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307702656|ref|ZP_07639608.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|291317224|gb|EFE57651.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307623772|gb|EFO02757.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] Length = 165 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 40/85 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G I + L ++++ D++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 E ++ +V ++ D Y Sbjct: 62 LLDENSEKGSIEVILEEDKDKYYKE 86 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PEI+ ++ ++ + D+ Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + DE SI+ K K+ K Sbjct: 61 LLL-DENSEKGSIEVILEEDKDKYYKEVK 88 >gi|163816452|ref|ZP_02207816.1| hypothetical protein COPEUT_02641 [Coprococcus eutactus ATCC 27759] gi|158448152|gb|EDP25147.1| hypothetical protein COPEUT_02641 [Coprococcus eutactus ATCC 27759] Length = 268 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G+RI + RK N +Q+E A AV+ +E + + + + +S D + Sbjct: 3 QIGSRILEYRKKMNMSQEEFANKIGVSRQAVSKWELDKAYPDLDKLVDICGMFGLSLDEL 62 Query: 91 YDGEVIDRRYEDVTNKK 107 +G D ++ Sbjct: 63 VNGVEQDEEPVMEAEQR 79 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG+R+ RK MSQ EF +G+ +S +E + P++ I + LD Sbjct: 1 MVQIGSRILEYRKKMNMSQEEFANKIGVSRQAVSKWELDKAYPDLDKLVDICGMFGLSLD 60 Query: 171 WIYFGDEVIVPKSIK 185 + G E ++ Sbjct: 61 ELVNGVEQDEEPVME 75 >gi|221195204|ref|ZP_03568260.1| transcriptional regulator, xre family [Atopobium rimae ATCC 49626] gi|221185107|gb|EEE17498.1| transcriptional regulator, xre family [Atopobium rimae ATCC 49626] Length = 236 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++++RK TQ+++A V+ +E G + + L + Y + I Sbjct: 5 KIGKVLQELRKEKGLTQEQLAEQMGVTRRTVSRWETGSNMPDLDILMELSDFYAVDLREI 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 GE + + L+ K Sbjct: 65 LCGERTREHMDKELRETILEVADYSNDEKE 94 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 41/95 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG L+ +RK+KG++Q + + +G+ T+S +E G +P++ ++ Sbjct: 1 MDIVKIGKVLQELRKEKGLTQEQLAEQMGVTRRTVSRWETGSNMPDLDILMELSDFYAVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 L I G+ + + D+K Sbjct: 61 LREILCGERTREHMDKELRETILEVADYSNDEKER 95 >gi|319646479|ref|ZP_08000708.1| transcriptional regulator [Bacillus sp. BT1B_CT2] gi|317391067|gb|EFV71865.1| transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 101 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R TQ+E+A + + +ENG L + Y+++ D++ Sbjct: 2 LGGRLKSLRGKR--TQEEVAKQIGVSRARYSHYENGRSEPDYETLKKLADYYKVTIDYLL 59 Query: 92 DGEVIDRRYEDVTNKK 107 G + + + + Sbjct: 60 TGTEKKKTSKTKSQIR 75 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LKS+R + +Q E K +G+ + S+YE GR+ P+ + +K+ K +D++ G E Sbjct: 6 LKSLRGKR--TQEEVAKQIGVSRARYSHYENGRSEPDYETLKKLADYYKVTIDYLLTGTE 63 >gi|257417719|ref|ZP_05594713.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|45827617|gb|AAS78452.1| BcrR [Enterococcus faecalis] gi|257159547|gb|EEU89507.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 204 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 41/107 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +R N TQ+++A +A++ +E+G ++ + + ++ D + Sbjct: 2 EFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNMESLKCISKFFSVTIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 GE + E Y + + + +G +G Sbjct: 62 LSGEELITLAETENRSNLKKIYNYIYGILDMMAVAFIFLPLYGNSVG 108 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +R K ++Q + + L + + +S +E G+ P ++ + I + +D Sbjct: 1 MEFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNMESLKCISKFFSVTIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + G+E+I + N+S+ K + Sbjct: 61 LLSGEELITLAETE----NRSNLKKIYNY 85 >gi|268320250|ref|YP_003293906.1| hypothetical protein FI9785_1788 [Lactobacillus johnsonii FI9785] gi|262398625|emb|CAX67639.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 161 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK +RK NN TQ+EMA N A++ +EN + + + +S D + Sbjct: 2 EFNEQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAKTFGVSLDEL 61 Query: 91 YDGEVIDRRYEDV 103 G+ + E Sbjct: 62 ILGDKKMNKIEQT 74 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 38/86 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K +RK+ ++Q E K L + +SN+E R +P+ + I + LD Sbjct: 1 MEFNEQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAKTFGVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD+ + + ++ +K Sbjct: 61 LILGDKKMNKIEQTLINDGKRTRAAK 86 >gi|302530702|ref|ZP_07283044.1| transcriptional regulator [Streptomyces sp. AA4] gi|302439597|gb|EFL11413.1| transcriptional regulator [Streptomyces sp. AA4] Length = 187 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 EI + VG R++ +R T +++ ES ++ ENG ++ L L Y Sbjct: 3 EIDEVLDAVGPRLRALRTRRGITLADLSAETGISESTLSRLENGQRRANLELLLPLSRAY 62 Query: 84 EISFDWIY 91 ++ D + Sbjct: 63 DVPIDDLV 70 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R +G++ + G+ STLS E G+ ++ + + +D + Sbjct: 10 AVGPRLRALRTRRGITLADLSAETGISESTLSRLENGQRRANLELLLPLSRAYDVPIDDL 69 Query: 173 Y 173 Sbjct: 70 V 70 >gi|331648293|ref|ZP_08349382.1| transciptional regulator [Escherichia coli M605] gi|331042842|gb|EGI14983.1| transciptional regulator [Escherichia coli M605] Length = 230 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 34/69 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI++ R+ + TQ +A ++ ++ +E+G + + + + L +S +W+ Sbjct: 2 INDRIREARRNVHLTQDALAKRIGLTKATISQWESGNTTPNGKNLINLAEALNVSPEWLL 61 Query: 92 DGEVIDRRY 100 G+ D + Sbjct: 62 SGKTSDTKE 70 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++ R++ ++Q K +G+ +T+S +E G T P K + + +W+ Sbjct: 1 MINDRIREARRNVHLTQDALAKRIGLTKATISQWESGNTTPNGKNLINLAEALNVSPEWL 60 Query: 173 YFGDEVIVPKSIKRAK 188 G + A+ Sbjct: 61 LSGKTSDTKEIHSNAQ 76 >gi|295110461|emb|CBL24414.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 315 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +K RK N TQ+++A V+ +E G + + L Y++ Sbjct: 4 KKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGTNLPDLSILVELAEYYDVEMRE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + DGE + + K+ LD A+ Sbjct: 64 LLDGE--RSQTMNKEMKETLDKVAVYE 88 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IGA LK RK+K ++Q + + G+ T+S +E G +P++ ++ + Sbjct: 1 MDTKKIGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGTNLPDLSILVELAEYYDVE 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 MRELLDGE 68 >gi|255524707|ref|ZP_05391659.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185668|ref|ZP_06854077.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] gi|255511601|gb|EET87889.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049796|gb|EFG89221.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] Length = 120 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 44/87 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I RL+ +RKD+ SQ + + LG+ +S +E + P+I K+ ++ D+ Sbjct: 1 MGISERLQKLRKDERYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + G+E I +K N+ + KS+K Sbjct: 61 LLKGEEQISKPIEIDSKENKENTKSRK 87 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 42/97 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +RK +Q+++A A++ +E+ + I + L Y +S D++ Sbjct: 3 ISERLQKLRKDERYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 GE + ++ +K+ + + G+S Sbjct: 63 KGEEQISKPIEIDSKENKENTKSRKMFSILLFIAGIS 99 >gi|228953898|ref|ZP_04115937.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805866|gb|EEM52446.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 277 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MSTYNLGKKTKGGTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ +++ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNENVD 89 >gi|218134985|ref|ZP_03463789.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC 43243] gi|217990370|gb|EEC56381.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC 43243] Length = 368 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 36/76 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK N +Q+E+A +V+ +E + L L + ++ D++ Sbjct: 3 LADKIINLRKKNGWSQEELAERLGVSRQSVSKYEGAQSVPDLDKILKLSEIFGVTTDYLI 62 Query: 92 DGEVIDRRYEDVTNKK 107 ++ + +Y + T K Sbjct: 63 KDDIEEEQYSEYTGYK 78 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + ++RK G SQ E + LG+ ++S YE +++P++ K+ ++ D++ D Sbjct: 7 IINLRKKNGWSQEELAERLGVSRQSVSKYEGAQSVPDLDKILKLSEIFGVTTDYLIKDD 65 >gi|225390137|ref|ZP_03759861.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] gi|225043790|gb|EEG54036.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] Length = 194 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RK TQ+++A N E AV+ +E G+ + L +S + + Sbjct: 5 KIGKLIRALRKDQGLTQRQLAAAMNISEQAVSKWERGLGFPDVSLLPELSEVLGVSPETV 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 GE+ D N K+L Y Sbjct: 65 LSGEM-DANDLVGGNMKKLKFYVCPTC 90 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 36/68 (52%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG ++++RKD+G++Q + + + +S +E+G P++ ++ +V Sbjct: 1 MDCVKIGKLIRALRKDQGLTQRQLAAAMNISEQAVSKWERGLGFPDVSLLPELSEVLGVS 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 PETVLSGE 68 >gi|149203921|ref|ZP_01880889.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149142363|gb|EDM30408.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 207 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 4/94 (4%) Query: 10 SLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 L+ +E PE D+G R++ +RKA T ++ A A S ++ ENG Sbjct: 9 LLRVTRETGGAAAPE----PLDLGARVRSLRKARGWTLEQAAKQAGLARSTLSKIENGQM 64 Query: 70 STSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 S + L EIS ++ DR + Sbjct: 65 SPTYDALKKLAQGLEISVPQLFTPPSRDRINGRM 98 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++S+RK +G + + K G+ STLS E G+ P +K+ Q + + ++ Sbjct: 29 ARVRSLRKARGWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKKLAQGLEISVPQLFT 87 >gi|229061195|ref|ZP_04198545.1| Helix-turn-helix domain protein [Bacillus cereus AH603] gi|228718066|gb|EEL69706.1| Helix-turn-helix domain protein [Bacillus cereus AH603] Length = 262 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 19/169 (11%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 2 EFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN--YEQ 148 + +N+K Y + LG LS Y Sbjct: 62 LK------ETAEQSNEKEHGYYVSKEMAEGYIVYGQKISKYIA--LGFSLLILSTIPYLL 113 Query: 149 GRTIPEIKP-ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 + P + I V ++VP +I+ ++ N K+ Sbjct: 114 FKEDPTMSTFLIIIIAVLGIGA--------IMVPVTIEESRYNVLKKEE 154 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MEFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + +S ++ G SK+ + Sbjct: 61 LLK---ETAEQSNEKEHGYYVSKEMAEGY 86 >gi|116493704|ref|YP_805438.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116103854|gb|ABJ68996.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 202 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 39/80 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L IR M+Q + L + T+SN+E R +P+++ +I ++ + LD Sbjct: 1 MNFSKQLHQIRMAHQMTQANLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D + K I+ +K ++ Sbjct: 61 LILDDPKLNEKLIQDSKISR 80 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 33/97 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ IR A+ TQ +A + V+ +EN + + +E+S D + Sbjct: 2 NFSKQLHQIRMAHQMTQANLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 + +K + ++ GM Sbjct: 62 ILDDPKLNEKLIQDSKISRHQMIMAVMTTAVAMMSGM 98 >gi|225570227|ref|ZP_03779252.1| hypothetical protein CLOHYLEM_06323 [Clostridium hylemonae DSM 15053] gi|225161022|gb|EEG73641.1| hypothetical protein CLOHYLEM_06323 [Clostridium hylemonae DSM 15053] Length = 195 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 36/91 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK +R+ +Q+E+A+ V+ +E ++ + L N + +S D Sbjct: 2 DIGLRIKKLREQQKISQEELALKIFVSRQTVSNWETNKSCPDVKSLIILSNVFNVSLDSF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + R + L + Sbjct: 62 IKEDIKEMREIVEKAAIKKFNMMSVVFLAEL 92 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +R+ + +SQ E + + T+SN+E ++ P++K + V LD D Sbjct: 7 IKKLREQQKISQEELALKIFVSRQTVSNWETNKSCPDVKSLIILSNVFNVSLDSFIKEDI 66 Query: 178 VIVPKSIKRA 187 + + +++A Sbjct: 67 KEMREIVEKA 76 >gi|251779221|ref|ZP_04822141.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083536|gb|EES49426.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 94 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 4/95 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ ++RK Q+++ S +E+G S+ + L Y +S D+I Sbjct: 2 LGERLAELRKDKGLKQEDIGKILRISRSTYGNYESGYAEPSVSILIDLAKFYNVSLDYIC 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 I + I ++ R+ Sbjct: 62 CNTDIRYNFYKDKRL----CAYINKCIEVYREFLK 92 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RL +RKDKG+ Q + GK+L + ST NYE G P + + + LD+I Sbjct: 1 MLGERLAELRKDKGLKQEDIGKILRISRSTYGNYESGYAEPSVSILIDLAKFYNVSLDYI 60 >gi|225574885|ref|ZP_03783495.1| hypothetical protein RUMHYD_02963 [Blautia hydrogenotrophica DSM 10507] gi|225037908|gb|EEG48154.1| hypothetical protein RUMHYD_02963 [Blautia hydrogenotrophica DSM 10507] Length = 98 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE 65 F + + + LI+ R+ K RI+++R+ + TQKE++ + + +E Sbjct: 2 FRIAIVHFVLDIILIVEQRKRKSMKF--QRIQNLREDADLTQKELSEYLHISPRTYSHYE 59 Query: 66 NGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 NG + + + L N Y S D++ Sbjct: 60 NGTRNIPVEMLIRLANYYNTSIDYLVGRTDNP 91 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++++R+D ++Q E + L + T S+YE G ++ ++ +D++ Sbjct: 25 MKFQRIQNLREDADLTQKELSEYLHISPRTYSHYENGTRNIPVEMLIRLANYYNTSIDYL 84 Query: 173 Y 173 Sbjct: 85 V 85 >gi|306828752|ref|ZP_07461944.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304428930|gb|EFM32018.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 165 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 39/85 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G I + L ++++ D++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 E ++ V ++ D Y Sbjct: 62 LLDENSEKSSTAVILEEDKDKYYRE 86 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 40/82 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PEI+ ++ ++ + D+ Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + + + + ++ Sbjct: 61 LLLDENSEKSSTAVILEEDKDK 82 >gi|229146197|ref|ZP_04274572.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24] gi|228637256|gb|EEK93711.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24] Length = 277 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLVKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I V + LD++ +S ++ G SK+ + Sbjct: 61 KLIMIGNVFEVSLDYLLK---ETAEQSNEKENGYYVSKEMAEGY 101 >gi|227510766|ref|ZP_03940815.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189768|gb|EEI69835.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 245 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ RK + TQ+++A + ++ +EN + ++ + L + D + G+ Sbjct: 7 LRKRRKELHLTQQQLADKLHVTRQTLSRWENNLSYPNLDTLVNLSEFLAVPLDILLKGDG 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 + + + D Y + Sbjct: 67 NLMVNKISQDVRDKDKYKRYLMI 89 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L+ RK+ ++Q + L + TLS +E + P + + + LD Sbjct: 1 MQFANVLRKRRKELHLTQQQLADKLHVTRQTLSRWENNLSYPNLDTLVNLSEFLAVPLDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + GD ++ I + ++ K Sbjct: 61 LLKGDGNLMVNKISQDVRDKDKYKR 85 >gi|222153931|ref|YP_002563108.1| DNA-binding phage protein [Streptococcus uberis 0140J] gi|222114744|emb|CAR43890.1| putative DNA-binding phage protein [Streptococcus uberis 0140J] Length = 233 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 65/167 (38%), Gaps = 19/167 (11%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++R+ N TQ+E+A + + + +E G A L + ++++ ++ Sbjct: 2 NRIKELREEKNLTQQELADILDISKRTLGYWEKGK-QIKPDKAKQLADYFKVTVGYLLGY 60 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTI 152 +G+RLK +R + G++ + L + + +E I Sbjct: 61 TN----------------LGVGSRLKQLRLNSGLTIEKVCNDLKIEDLDYWKLWETQDNI 104 Query: 153 -PEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + A++I ++++ ++ + ++ SKK Sbjct: 105 TFGKELAQEIADYFSVDVNYLLGKTNIVNTNFSSIEQNDKEFLYSKK 151 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +R++K ++Q E +L + TL +E+G+ I + A+++ K + ++ Sbjct: 1 MNRIKELREEKNLTQQELADILDISKRTLGYWEKGKQI-KPDKAKQLADYFKVTVGYLLG 59 Query: 175 GDEVIVPKSIKRAKGN 190 + V +K+ + N Sbjct: 60 YTNLGVGSRLKQLRLN 75 Score = 39.2 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 9/88 (10%), Positives = 28/88 (31%), Gaps = 2/88 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNL-FENGMC-STSIRYALYLRNEYEISFDW 89 VG+R+K +R + T +++ + +E + A + + + + ++ Sbjct: 65 VGSRLKQLRLNSGLTIEKVCNDLKIEDLDYWKLWETQDNITFGKELAQEIADYFSVDVNY 124 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + I + + Sbjct: 125 LLGKTNIVNTNFSSIEQNDKEFLYSKKF 152 >gi|219668902|ref|YP_002459337.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539162|gb|ACL20901.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 322 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK+N +Q+E+A N +++ +E+ I L L + ++ D++ Sbjct: 3 LAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDYLL 62 Query: 92 DGEVIDRRY---EDVTNKKRLDPYAIGARLK 119 + Y ++ N R+ + LK Sbjct: 63 KDDFETAVYSGADETENYIRVSLQEMNDFLK 93 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ S+RK G SQ E + + + ++S +E IP+I ++ ++ D+ Sbjct: 1 MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDY 60 Query: 172 IYFGD 176 + D Sbjct: 61 LLKDD 65 >gi|154496484|ref|ZP_02035180.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] gi|150274567|gb|EDN01644.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] Length = 360 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 11/97 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I+ +RK TQ+++A V+ +E G C + + L +E S D + Sbjct: 5 LAENIRMLRKERGLTQEQLAEAMGITVGTVSKWETGSCVPDVSLMMELAEFFETSVDVLL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 E ED RLK++R K Sbjct: 65 GYEQQSMALED-----------RLERLKNLRMSKYYD 90 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + ++ +RK++G++Q + + +G+ T+S +E G +P++ ++ + + +D + Sbjct: 4 CLAENIRMLRKERGLTQEQLAEAMGITVGTVSKWETGSCVPDVSLMMELAEFFETSVDVL 63 Query: 173 YFGDE--VIVPKSIKRAKGNQSSK 194 ++ + + ++R K + SK Sbjct: 64 LGYEQQSMALEDRLERLKNLRMSK 87 >gi|257439204|ref|ZP_05614959.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198337|gb|EEU96621.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 95 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI +R +Q+++A + E G + S++ + + + +S D++ Sbjct: 8 IGNRIFTLRTNAKLSQEKLAEKLGVSHHHLGDLERGSSNGSVKILIDIAEYFHVSMDYLL 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G R + +D L Sbjct: 68 LGRDPSRNQFQNELQAAIDHLEKIKGL 94 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 37/76 (48%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 DP AIG R+ ++R + +SQ + + LG+ + L + E+G + +K I + Sbjct: 1 MSFDPNAIGNRIFTLRTNAKLSQEKLAEKLGVSHHHLGDLERGSSNGSVKILIDIAEYFH 60 Query: 167 KHLDWIYFGDEVIVPK 182 +D++ G + + Sbjct: 61 VSMDYLLLGRDPSRNQ 76 >gi|293374180|ref|ZP_06620511.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292647209|gb|EFF65188.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 191 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I +RK +Q+++A+ N A++ +E G + + L + +S D + Sbjct: 3 LGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSIDSLL 62 Query: 92 DGE 94 G+ Sbjct: 63 RGD 65 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 37/75 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +RK++ +SQ + L + +S +E G IP+ + ++ +V +D Sbjct: 1 MMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSIDS 60 Query: 172 IYFGDEVIVPKSIKR 186 + GD P + ++ Sbjct: 61 LLRGDLKCQPTNQEK 75 >gi|229490099|ref|ZP_04383947.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229322975|gb|EEN88748.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 203 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E Q D+G R++ +R+ T + ++ SA++ E+G ++ L L Sbjct: 4 MDAEFEQLITDIGPRLRTLRRDRGLTLEGLSEATGVSVSALSRLESGKRRPTLDLLLPLA 63 Query: 81 NEYEISFDWIY 91 + ++ D + Sbjct: 64 RAHRVALDQLV 74 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY---- 173 L+++R+D+G++ + G+ S LS E G+ P + + + + LD + Sbjct: 19 LRTLRRDRGLTLEGLSEATGVSVSALSRLESGKRRPTLDLLLPLARAHRVALDQLVGAPA 78 Query: 174 FGDEVIVPKSIKRAKGN 190 GD + +R G+ Sbjct: 79 TGDPRVHLTPSRRKNGS 95 >gi|167771744|ref|ZP_02443797.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM 17241] gi|167666384|gb|EDS10514.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM 17241] Length = 132 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 38/93 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G I RK + TQ ++A + AV+ +ENG + L + IS + Sbjct: 3 QKKIGAFIAQCRKEKSLTQIQLAELLDITNQAVSKWENGRGMPDVSLLQPLCDALGISLN 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ GE I ++ + ++ ++ Sbjct: 63 ELFSGEHISAEEYKGKAEENISKLYKEKQIANL 95 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IGA + RK+K ++QI+ +LL + N +S +E GR +P++ + + Sbjct: 1 MDQKKIGAFIAQCRKEKSLTQIQLAELLDITNQAVSKWENGRGMPDVSLLQPLCDALGIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 L+ ++ G+ + + + K ++ K K+K+ +N Sbjct: 61 LNELFSGEHISAEEY--KGKAEENISKLYKEKQIAN 94 >gi|153938571|ref|YP_001391627.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934467|gb|ABS39965.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295319660|gb|ADG00038.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 80 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+ + TQ ++A + SAV +ENG+ + + + + + +S D++ Sbjct: 5 DRLKGLREDRDLTQDQIADVLSITRSAVANYENGIREPDMALLVKISDYFNVSLDYLLCR 64 Query: 94 EVIDRRYEDVTNKKRL 109 + K +L Sbjct: 65 TNKMEPFYKNNKKNKL 80 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R+D+ ++Q + +L + S ++NYE G P++ KI LD+ Sbjct: 1 MVFKDRLKGLREDRDLTQDQIADVLSITRSAVANYENGIREPDMALLVKISDYFNVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + + P K N+ +K Sbjct: 61 LLCRTNKMEP----FYKNNKKNK 79 >gi|210624086|ref|ZP_03294186.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275] gi|210153219|gb|EEA84225.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275] Length = 158 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E K +G +K R+ N+ TQ+ +A AV+ +ENG+ S + L Sbjct: 84 VRKEKTIIRKSLGEVLKSHREKNHMTQEFVAEAIGVSRQAVSKWENGVSDPSTSNLIALA 143 Query: 81 NEYEISFDWIYD 92 + +S + + Sbjct: 144 KLFNMSPEELLQ 155 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 34/79 (43%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 + +V +K + ++G LKS R+ M+Q + +G+ +S +E G + P Sbjct: 80 KSSEVRKEKTIIRKSLGEVLKSHREKNHMTQEFVAEAIGVSRQAVSKWENGVSDPSTSNL 139 Query: 159 RKIKQVTKKHLDWIYFGDE 177 + ++ + + E Sbjct: 140 IALAKLFNMSPEELLQEVE 158 >gi|169349918|ref|ZP_02866856.1| hypothetical protein CLOSPI_00658 [Clostridium spiroforme DSM 1552] gi|169293486|gb|EDS75619.1| hypothetical protein CLOSPI_00658 [Clostridium spiroforme DSM 1552] Length = 194 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 11/142 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++IK R+ N +Q+E+A+ ++ +E ++ + L N + +S D Sbjct: 2 DIGSQIKKFREQQNISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-----------MP 139 G++ + R + + L + + F + Sbjct: 62 IRGDIKEMREIIEKSTIKKFNVISVVFLIELIVIAVSAYPLFSIKGNIGIVIWLCLFAIT 121 Query: 140 NSTLSNYEQGRTIPEIKPARKI 161 T S E+ + +I+ ++I Sbjct: 122 LYTASKIEKFKKSYDIQTYKEI 143 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 39/76 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+++K R+ + +SQ E + + T+SN+E ++ P++K + + LD Sbjct: 1 MDIGSQIKKFREQQNISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDD 60 Query: 172 IYFGDEVIVPKSIKRA 187 GD + + I+++ Sbjct: 61 FIRGDIKEMREIIEKS 76 >gi|229197740|ref|ZP_04324459.1| Helix-turn-helix domain protein [Bacillus cereus m1293] gi|228585685|gb|EEK43784.1| Helix-turn-helix domain protein [Bacillus cereus m1293] Length = 262 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIK 185 + +++ Sbjct: 61 LLKETAEQSNENVD 74 >gi|154501121|ref|ZP_02039159.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] gi|150269867|gb|EDM97399.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] Length = 89 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +D G+RI+ +RK TQ+++A N + E G + + A+ +++S D Sbjct: 5 REDYGSRIRSLRKKRGLTQEQLAEKMNVSTPYIAKIETGKQTGPVELAVEFAAFFDVSLD 64 Query: 89 WIYDG 93 ++ G Sbjct: 65 YLLVG 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 33/69 (47%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + G+R++S+RK +G++Q + + + + ++ E G+ ++ A + Sbjct: 1 MYFNREDYGSRIRSLRKKRGLTQEQLAEKMNVSTPYIAKIETGKQTGPVELAVEFAAFFD 60 Query: 167 KHLDWIYFG 175 LD++ G Sbjct: 61 VSLDYLLVG 69 >gi|296504134|ref|YP_003665834.1| transcriptional repressor [Bacillus thuringiensis BMB171] gi|296325186|gb|ADH08114.1| transcriptional repressor [Bacillus thuringiensis BMB171] Length = 262 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + +S ++ G SK+ + Sbjct: 61 LLK---ETAEQSNEKENGYYVSKEMAEGY 86 >gi|52141788|ref|YP_085042.1| transcriptional regulator [Bacillus cereus E33L] gi|51975257|gb|AAU16807.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 145 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N TQK++A + + +E+ L + + +S D++ Sbjct: 5 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYLL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 V D+ E +T K D +K Sbjct: 65 GRAVTDQPKEQLTQKDEKDIAKRMEEIKR 93 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+RK + ++Q + + +G+ + YE P K+ D++ Sbjct: 9 IKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYLLGRAV 68 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 PK K + K ++ K Sbjct: 69 TDQPKEQLTQKDEKDIAKRMEEIK 92 >gi|332968066|gb|EGK07153.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 152 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 4/117 (3%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E + +G R++ +R Q+++A +SA+ ++E G S+ + Sbjct: 1 MKKEGADDMRILGQRLRTLRLEKKMRQEDLAREIGISKSAIGMYERGEREPSLILLREIA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI--RKDKGMSQIEFGKL 135 + + +S D++ DR +++ DP LK+ RKD QI K Sbjct: 61 DFFRVSADFLLGR--SDRASFPSNLRRKSDPPGADGNLKNFLTRKDLHWDQIPLAKK 115 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G RL+++R +K M Q + + +G+ S + YE+G P + R+I + Sbjct: 8 DMRILGQRLRTLRLEKKMRQEDLAREIGISKSAIGMYERGEREPSLILLREIADFFRVSA 67 Query: 170 DWIYFG-DEVIVPKSIKR------AKGNQSSKKSKKDKK 201 D++ D P +++R A GN + ++KD Sbjct: 68 DFLLGRSDRASFPSNLRRKSDPPGADGNLKNFLTRKDLH 106 >gi|229117089|ref|ZP_04246469.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3] gi|228666378|gb|EEL21840.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3] Length = 262 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + +S ++ G SK+ + Sbjct: 61 LLK---ETAEQSNEKENGYYVSKEMAEGY 86 >gi|218898722|ref|YP_002447133.1| helix-turn-helix domain protein [Bacillus cereus G9842] gi|218540740|gb|ACK93134.1| helix-turn-helix domain protein [Bacillus cereus G9842] Length = 262 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + +S ++ G SK+ + Sbjct: 61 LLK---ETAEQSNEKENGYYVSKEMAEGY 86 >gi|163815391|ref|ZP_02206766.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC 27759] gi|158449365|gb|EDP26360.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC 27759] Length = 172 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++ +RK TQ+E+A +V+ +ENG + + L + Y++ I Sbjct: 18 KIGNFLRKLRKEKGMTQEEIATKFGVSSRSVSRWENGNTMPDLAILVELADYYDVDIREI 77 Query: 91 YDGEVIDRRYEDVTNKKRL 109 DGE E T + L Sbjct: 78 IDGERKSENMEKETKETLL 96 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + + +D IG L+ +RK+KGM+Q E G+ + ++S +E G T+P++ Sbjct: 3 DNQQRKEKTEMIDQVKIGNFLRKLRKEKGMTQEEIATKFGVSSRSVSRWENGNTMPDLAI 62 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAK 188 ++ + I G+ + + Sbjct: 63 LVELADYYDVDIREIIDGERKSENMEKETKE 93 >gi|229075522|ref|ZP_04208510.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18] gi|228707618|gb|EEL59803.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18] Length = 277 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLVKKIKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I V + LD++ +S ++ G SK+ + Sbjct: 61 KLIMIGNVFEVSLDYLLK---ETAEQSNEKENGYYVSKEMAEGY 101 >gi|154501006|ref|ZP_02039044.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC 29799] gi|150270030|gb|EDM97549.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC 29799] Length = 297 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 Y G I+D+RK TQKE+A + + AV+ +E G+C+ I L S Sbjct: 2 YNMKTGQLIRDLRKEKGMTQKELADKLHITDRAVSKWERGLCAPEISLLEPLAEALGCSV 61 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAI 114 + GE + + + D Sbjct: 62 LDLMAGERTAKAADSQEEARTRDVLHY 88 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G ++ +RK+KGM+Q E L + + +S +E+G PEI + + Sbjct: 1 MYNMKTGQLIRDLRKEKGMTQKELADKLHITDRAVSKWERGLCAPEISLLEPLAEALGCS 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 VLDLMAGE 68 >gi|15614006|ref|NP_242309.1| transcriptional regulator [Bacillus halodurans C-125] gi|10174060|dbj|BAB05162.1| transcriptional regulator [Bacillus halodurans C-125] Length = 107 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +RK + T KE+ N ES ++ +ENG + + + + S D++ Sbjct: 4 ERLRYLRKKHGLTMKELGKKINVAESTISGYENGNRKPDMDTLVKMAEYFNSSTDYLLGR 63 Query: 94 EVIDRRYEDVTNKKRL 109 Y+ +K+ Sbjct: 64 TEEPAPYQKQPPEKQF 79 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +RK G++ E GK + + ST+S YE G P++ K+ + D++ Sbjct: 1 MFPERLRYLRKKHGLTMKELGKKINVAESTISGYENGNRKPDMDTLVKMAEYFNSSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 E P + + ++ D++ Sbjct: 61 LGRTEEPAPYQKQPPEKQFLYSETVTDEE 89 >gi|153853942|ref|ZP_01995275.1| hypothetical protein DORLON_01266 [Dorea longicatena DSM 13814] gi|149753324|gb|EDM63255.1| hypothetical protein DORLON_01266 [Dorea longicatena DSM 13814] Length = 147 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 37/84 (44%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 PE R ++G ++KD R + TQ+ +A N ++ +EN I + L + Sbjct: 6 PERRNTDMEIGKKLKDARMKSGFTQETVAERINVSRQTISNWENEKSYPDIISVIELSSL 65 Query: 83 YEISFDWIYDGEVIDRRYEDVTNK 106 Y IS D + G+ + + + Sbjct: 66 YSISLDDLLKGDERMMEHLEESTN 89 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 43/94 (45%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 ++R IG +LK R G +Q + + + T+SN+E ++ P+I ++ Sbjct: 3 KDVPERRNTDMEIGKKLKDARMKSGFTQETVAERINVSRQTISNWENEKSYPDIISVIEL 62 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 + LD + GDE ++ + +S++K Sbjct: 63 SSLYSISLDDLLKGDERMMEHLEESTNVVKSNQK 96 >gi|332671809|ref|YP_004454817.1| helix-turn-helix domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340847|gb|AEE47430.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484] Length = 221 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + ++ + VG+R++ +R+ T ++A S ++ E+G ++ L L Sbjct: 24 LRPTDVEAALEGVGSRLRALRQDRGLTLAQVADATGVSLSTLSRLESGGRRPTLELLLPL 83 Query: 80 RNEYEISFDWIYD 92 EY++ D + D Sbjct: 84 AREYQVPLDELVD 96 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 +RL+++R+D+G++ + G+ STLS E G P ++ + + + LD + Sbjct: 38 SRLRALRQDRGLTLAQVADATGVSLSTLSRLESGGRRPTLELLLPLAREYQVPLDELVDA 97 Query: 174 --FGDEVIVPKSIKR 186 GD + + +R Sbjct: 98 PATGDPRVFARPFER 112 >gi|300785112|ref|YP_003765403.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794626|gb|ADJ45001.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 192 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ + VG R++ +R+ T ++A ES ++ E+G + L L Sbjct: 1 MSDDFEDVLHAVGPRLRALRRHRGMTLADVAAATGVSESTLSRLESGQRRAGLELLLPLA 60 Query: 81 NEYEISFDWIY 91 Y++ D + Sbjct: 61 RAYDVPLDDLV 71 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +A+G RL+++R+ +GM+ + G+ STLS E G+ ++ + + LD Sbjct: 10 HAVGPRLRALRRHRGMTLADVAAATGVSESTLSRLESGQRRAGLELLLPLARAYDVPLDD 69 Query: 172 IY 173 + Sbjct: 70 LV 71 >gi|229098072|ref|ZP_04229020.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29] gi|228685263|gb|EEL39193.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29] Length = 277 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLVKKIKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I V + LD++ +S ++ G SK+ + Sbjct: 61 KLIMIGNVFEVSLDYLLK---ETAKQSNEKENGYYVSKEMAEGY 101 >gi|229104167|ref|ZP_04234839.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28] gi|228679184|gb|EEL33389.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28] Length = 272 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLVKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I V + LD++ +S ++ G SK+ + Sbjct: 61 KLIMIGNVFEVSLDYLLK---ETAEQSNEKEDGYYVSKEMAEGY 101 >gi|300786099|ref|YP_003766390.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795613|gb|ADJ45988.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 197 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T I Q +VG R+K +R T +++ +S ++ E+G S+ L + Sbjct: 1 MTDAITQALAEVGPRLKRVRTQRRVTLADLSAATGISKSTLSRLESGQRKPSLELLLPIA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKK 107 +++ D + + +T ++ Sbjct: 61 QAHQVPLDELVGAPEVGDPRVRLTARR 87 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R + ++ + G+ STLS E G+ P ++ I Q + LD + E Sbjct: 16 LKRVRTQRRVTLADLSAATGISKSTLSRLESGQRKPSLELLLPIAQAHQVPLDELVGAPE 75 Query: 178 VIVPKSIKRAK 188 V P+ A+ Sbjct: 76 VGDPRVRLTAR 86 >gi|229078339|ref|ZP_04210903.1| hypothetical protein bcere0023_10100 [Bacillus cereus Rock4-2] gi|228705014|gb|EEL57436.1| hypothetical protein bcere0023_10100 [Bacillus cereus Rock4-2] Length = 149 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSEHLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + GDE + K I+ +K Sbjct: 61 LLRGDEELTQKVIEDSK 77 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + G Sbjct: 5 EHLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRG 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 >gi|190151419|ref|YP_001974330.1| putative transcriptional repressor [Streptococcus phage PH15] gi|190014413|emb|CAQ57799.1| hypothetical protein [Streptococcus phage PH15] Length = 249 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 4/127 (3%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + Q +G +IK R N TQ+E+ ++A+ +E G+ S L N + Sbjct: 2 DKEQIAGVIGEKIKQYRLENGWTQQELGSKIGISKNAIGNYEKGIRSPKKDTMFDLANAF 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI----RKDKGMSQIEFGKLLGMP 139 IS D ++ D + T ++ + + K + R+ E K + Sbjct: 62 GISIDDLFPQIRKDSYTKISTIQEIYNELKPPRQAKVLTYAKRQLNEQKNEEDTKKTEVS 121 Query: 140 NSTLSNY 146 + Y Sbjct: 122 EDIIQLY 128 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++K R + G +Q E G +G+ + + NYE+G P+ + +D + Sbjct: 9 VIGEKIKQYRLENGWTQQELGSKIGISKNAIGNYEKGIRSPKKDTMFDLANAFGISIDDL 68 Query: 173 Y 173 + Sbjct: 69 F 69 >gi|229092601|ref|ZP_04223752.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42] gi|228690754|gb|EEL44530.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42] Length = 277 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 36/89 (40%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLVKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ +S+ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNESVD 89 >gi|89894475|ref|YP_517962.1| hypothetical protein DSY1729 [Desulfitobacterium hafniense Y51] gi|89333923|dbj|BAE83518.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK+N +Q+E+A N +++ +E+ I L L + ++ D++ Sbjct: 3 LAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDYLL 62 Query: 92 DGEVIDRRY---EDVTNKKRLDPYAIGARLK 119 + Y ++ N R+ + LK Sbjct: 63 KDDFETAVYSGADETENYIRVSLQEMNDFLK 93 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ S+RK G SQ E + + + ++S +E IP+I ++ ++ D+ Sbjct: 1 MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDY 60 Query: 172 IYFGD 176 + D Sbjct: 61 LLKDD 65 >gi|317506239|ref|ZP_07964058.1| hypothetical protein HMPREF9336_00427 [Segniliparus rugosus ATCC BAA-974] gi|316255485|gb|EFV14736.1| hypothetical protein HMPREF9336_00427 [Segniliparus rugosus ATCC BAA-974] Length = 149 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 19/152 (12%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +TP+ D+ +K R + ++ E++ S + +E+G S +I Sbjct: 1 MTPDRAIRGLDLAPLVKA-RAKHKMSRSELSRLTGLSTSTIQKWESGEVSPNIETVTKAA 59 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 + ++ + L R G+SQ + + LG+ Sbjct: 60 AALRVPL------------------RRLIKVPVRQRTLADWRHLAGLSQTKTARALGLTT 101 Query: 141 STLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + E+G T + A ++ Q+ D + Sbjct: 102 PAYAALERGETKLTPEKAARLAQLLGATPDQL 133 >gi|315037492|ref|YP_004031060.1| transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|325955952|ref|YP_004286562.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|312275625|gb|ADQ58265.1| putative transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|325332517|gb|ADZ06425.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 169 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I ++RK + +Q+ +A N AV+ +E+ I + L + ++ D++ Sbjct: 2 KLGQKIAELRKKSGLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 T ++ Sbjct: 62 LKNGTPSFELPGKTTEEE 79 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +RK G+SQ + + + +S +E ++IP+I+ + ++ D+ Sbjct: 1 MKLGQKIAELRKKSGLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDY 60 Query: 172 IYF 174 + Sbjct: 61 LLK 63 >gi|289550028|ref|YP_003470932.1| hypothetical protein SLGD_00657 [Staphylococcus lugdunensis HKU09-01] gi|289179560|gb|ADC86805.1| hypothetical protein SLGD_00657 [Staphylococcus lugdunensis HKU09-01] Length = 112 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 1/88 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK RK TQ ++A + V+ +E G + + + L + I+ D + Sbjct: 2 KLAEQIKKYRKEQGLTQDQLAAELHTTRQTVSKWEQGSIEPNAQMIVNLAQMFNITTDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + N+ D L Sbjct: 62 LTGE-NMSNFTKELNETGTDHLNFWDFL 88 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K RK++G++Q + L T+S +EQG P + + Q+ D Sbjct: 1 MKLAEQIKKYRKEQGLTQDQLAAELHTTRQTVSKWEQGSIEPNAQMIVNLAQMFNITTDE 60 Query: 172 IYFGD 176 + G+ Sbjct: 61 LLTGE 65 >gi|241895618|ref|ZP_04782914.1| conserved hypothetical protein [Weissella paramesenteroides ATCC 33313] gi|241871196|gb|EER74947.1| conserved hypothetical protein [Weissella paramesenteroides ATCC 33313] Length = 68 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++RK Q+E A N S +E G I + L + +++S D++ E Sbjct: 2 RLKELRKGKGMQQQEAAKELNIPGSTYAGYERGEREPRIDMLIKLADYFDVSVDYLIGHE 61 Query: 95 VIDRR 99 Sbjct: 62 KTPNH 66 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +RK KGM Q E K L +P ST + YE+G P I K+ +D++ Sbjct: 1 MRLKELRKGKGMQQQEAAKELNIPGSTYAGYERGEREPRIDMLIKLADYFDVSVDYLIGH 60 Query: 176 DEV 178 ++ Sbjct: 61 EKT 63 >gi|219669136|ref|YP_002459571.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539396|gb|ACL21135.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 208 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I ++R N +Q ++A +V+ +EN + + + + IS D + Sbjct: 3 LGEKIYELRTKNAMSQGDLANTLEVSRQSVSKWENNTSVPELDKLVKMSEVFSISLDELI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + + + D A L Sbjct: 63 RGEKTE---KMQRETQSPDISAPPNGL 86 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +R MSQ + L + ++S +E ++PE+ K+ +V LD Sbjct: 1 MTLGEKIYELRTKNAMSQGDLANTLEVSRQSVSKWENNTSVPELDKLVKMSEVFSISLDE 60 Query: 172 IYFGDEV 178 + G++ Sbjct: 61 LIRGEKT 67 >gi|228934904|ref|ZP_04097735.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824804|gb|EEM70605.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 277 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLGKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ +S+ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNESVD 89 >gi|91223886|ref|ZP_01259150.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269966489|ref|ZP_06180573.1| putative transcriptional regulator [Vibrio alginolyticus 40B] gi|91191378|gb|EAS77643.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269828946|gb|EEZ83196.1| putative transcriptional regulator [Vibrio alginolyticus 40B] Length = 185 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++G I +RK + +Q+E+A A SA++ ENG S S+ + N + +S Sbjct: 3 NQEIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLS 62 Query: 89 WIYDGEVIDRRYEDV 103 + E V Sbjct: 63 EFFTFEQPSNDEVKV 77 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + +RK G+SQ E + G+ +S +S+ E G+ P + +KI V Sbjct: 1 MDNQEIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLS 60 Query: 169 LDWIYFGDEVIVPKS 183 L + ++ + Sbjct: 61 LSEFFTFEQPSNDEV 75 >gi|238059739|ref|ZP_04604448.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881550|gb|EEP70378.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 206 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + VG R+K +R+ T ++A S ++ E G+ ++ L L Sbjct: 9 MDDTVERTLDAVGPRLKQLRQRREITLADLADETGISTSTLSRLEAGLRRPTLEQLLPLA 68 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 Y +S D + D ++ D Sbjct: 69 RAYGVSLDELVDAPATGNPRINLRPIACGD 98 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RLK +R+ + ++ + G+ STLS E G P ++ + + LD + Sbjct: 19 AVGPRLKQLRQRREITLADLADETGISTSTLSRLEAGLRRPTLEQLLPLARAYGVSLDEL 78 Query: 173 Y 173 Sbjct: 79 V 79 >gi|260589804|ref|ZP_05855717.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] gi|260539845|gb|EEX20414.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] Length = 336 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 2/103 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK +Q+E+A +++ +E + L L + +S D++ Sbjct: 3 LADKIVNLRKRAGWSQEELAEKMGVSRQSISKWEGAQSVPDMNRILKLSEVFCVSTDYLL 62 Query: 92 DG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 E + + + L+ +K + Sbjct: 63 RDDIEEVPCIVNPLEEAEPLEDSKGETLIKVSLETANEYLEYC 105 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 40/80 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + ++RK G SQ E + +G+ ++S +E +++P++ K+ +V D++ D Sbjct: 7 IVNLRKRAGWSQEELAEKMGVSRQSISKWEGAQSVPDMNRILKLSEVFCVSTDYLLRDDI 66 Query: 178 VIVPKSIKRAKGNQSSKKSK 197 VP + + + + SK Sbjct: 67 EEVPCIVNPLEEAEPLEDSK 86 >gi|73661421|ref|YP_300202.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493936|dbj|BAE17257.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 155 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + GT+IK IRK N TQ++ N V+ +EN I + + + +S D + Sbjct: 2 NFGTQIKMIRKENQLTQEQFGNQLNISRQTVSTWENNRYLPDIEMLVEIAKTFNLSLDDL 61 Query: 91 YDGEV 95 G Sbjct: 62 ILGNS 66 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 43/85 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++K IRK+ ++Q +FG L + T+S +E R +P+I+ +I + LD Sbjct: 1 MNFGTQIKMIRKENQLTQEQFGNQLNISRQTVSTWENNRYLPDIEMLVEIAKTFNLSLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + G+ V+ K + K + + S Sbjct: 61 LILGNSVVKDKLVNDTKFVKRIRLS 85 >gi|319950565|ref|ZP_08024474.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4] gi|319435759|gb|EFV90970.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4] Length = 195 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T Q VG R++ +R+ + T E+A S ++ E+G ++ L L Sbjct: 1 MTDPTAQTLTGVGPRLRSLRRHRDMTLAELADKTGISPSTLSRLESGQRRPTLELLLPLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNK 106 + ++ D + D + Sbjct: 61 RAHGVTLDHLVDAPPTGDPRIALRPF 86 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+S+R+ + M+ E G+ STLS E G+ P ++ + + LD + Sbjct: 16 LRSLRRHRDMTLAELADKTGISPSTLSRLESGQRRPTLELLLPLARAHGVTLDHLV 71 >gi|317500517|ref|ZP_07958740.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331089383|ref|ZP_08338282.1| hypothetical protein HMPREF1025_01865 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898106|gb|EFV20154.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330404751|gb|EGG84289.1| hypothetical protein HMPREF1025_01865 [Lachnospiraceae bacterium 3_1_46FAA] Length = 118 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R Q ++A N + ++ ENG ++L + +S D+I Sbjct: 4 NRVKELRTERGLRQGDLAEKMNVSQQTISRIENGENVLPSDILIHLSKYFHVSTDYILKL 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + E +++ L R ++ Sbjct: 64 SDVRMTQEYRLEMEQMLLRHFEFFLSYCRLNR 95 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 31/73 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+K +R ++G+ Q + + + + T+S E G + + + D+I Sbjct: 1 MLENRVKELRTERGLRQGDLAEKMNVSQQTISRIENGENVLPSDILIHLSKYFHVSTDYI 60 Query: 173 YFGDEVIVPKSIK 185 +V + + + Sbjct: 61 LKLSDVRMTQEYR 73 >gi|254383003|ref|ZP_04998358.1| hypothetical protein SSAG_02660 [Streptomyces sp. Mg1] gi|194341903|gb|EDX22869.1| hypothetical protein SSAG_02660 [Streptomyces sp. Mg1] Length = 299 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 20/146 (13%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++ +R+A + TQ +A AV +E+G L + D ++ Sbjct: 8 GHLMRRVRRAADLTQGAVAEKLGVSVPAVVGWESGKSVPDGEKLPALAQALGMDLDELFP 67 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRT 151 + L +R D G SQ + + G ++N E+GR Sbjct: 68 RRLPPD-------------------LADLRCDAGYSQYQTAAITGTRSAGPVANAERGRR 108 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDE 177 + Q + + E Sbjct: 109 PLSDSFLPLLAQAYGVSVPDLLAAQE 134 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G ++ +R+ ++Q + LG+ + +E G+++P+ + + Q LD + Sbjct: 6 FDGHLMRRVRRAADLTQGAVAEKLGVSVPAVVGWESGKSVPDGEKLPALAQALGMDLDEL 65 Query: 173 Y 173 + Sbjct: 66 F 66 >gi|228918433|ref|ZP_04081881.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841238|gb|EEM86432.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 142 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N TQK++A + + +E+ L + + +S D++ Sbjct: 2 IGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 V D + +T K D +K Sbjct: 62 GRAVTDETKKQLTPKDEKDIAKRMEEIKK 90 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+RK + ++Q + + +G+ + YE P K+ D++ Sbjct: 6 IKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYLLGRAV 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSS 203 K K + K ++ K Sbjct: 66 TDETKKQLTPKDEKDIAKRMEEIKKD 91 >gi|199599682|ref|ZP_03213053.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258507137|ref|YP_003169888.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199589426|gb|EDY97561.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257147064|emb|CAR86037.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259648507|dbj|BAI40669.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 291 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 41/89 (46%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + +L+ IR M+Q + + L + T+SN+E R +P+++ +I Sbjct: 81 TIKPSEVIILNFSKQLQQIRTAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIA 140 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 ++ LD + D + K IK +K ++ Sbjct: 141 RIFSVSLDTLILDDSELNEKLIKDSKVSR 169 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ IR A++ TQ ++A + V+ +EN + + + +S D + Sbjct: 91 NFSKQLQQIRTAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDTL 150 Query: 91 YDGEVI 96 + Sbjct: 151 ILDDSE 156 >gi|261207839|ref|ZP_05922524.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566390|ref|ZP_06446818.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|83940994|gb|ABC48899.1| hypothetical protein [Enterococcus faecium] gi|260078222|gb|EEW65928.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161828|gb|EFD09700.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 122 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 37/97 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +K +G RIK R N TQ+ +A V+ E G S S+ + + N Sbjct: 1 MELDFKAIGKRIKIARIKKNFTQEAVADRIGVSPQHVSNIETGNSSVSLPTLVAIANMLS 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S D + V+ + K + ++ + Sbjct: 61 VSVDELLCDTVLTSKPIFEREAKDIFEDCNEYEVRVL 97 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD AIG R+K R K +Q +G+ +SN E G + + I + Sbjct: 1 MELDFKAIGKRIKIARIKKNFTQEAVADRIGVSPQHVSNIETGNSSVSLPTLVAIANMLS 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 +D + + +R Sbjct: 61 VSVDELLCDTVLTSKPIFER 80 >gi|331267170|ref|YP_004326800.1| XRE family transcriptional regulator [Streptococcus oralis Uo5] gi|326683842|emb|CBZ01460.1| XRE family transcriptional regulator [Streptococcus oralis Uo5] Length = 165 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 40/85 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G I + L ++++ D++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 E ++ +V ++ D Y Sbjct: 62 LLDENSEKTSTEVILEEDKDKYYKE 86 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PEI+ ++ ++ + D+ Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 172 IYFGD--EVIVPKSIKRAKGNQSSKKSK 197 + + E + I ++ K+ K Sbjct: 61 LLLDENSEKTSTEVILEEDKDKYYKEVK 88 >gi|258538334|ref|YP_003172833.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|257150010|emb|CAR88982.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 202 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 40/80 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ IR M+Q + + L + T+SN+E R +P+++ +I ++ LD Sbjct: 1 MNFSKQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D + K IK +K ++ Sbjct: 61 LILDDSELNEKLIKDSKVSR 80 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ IR A++ TQ ++A + V+ +EN + + + +S D + Sbjct: 2 NFSKQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 ILDDSE 67 >gi|229174292|ref|ZP_04301825.1| Helix-turn-helix domain protein [Bacillus cereus MM3] gi|228609149|gb|EEK66438.1| Helix-turn-helix domain protein [Bacillus cereus MM3] Length = 277 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLGKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ ++++ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNENVE 89 >gi|28379424|ref|NP_786316.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254557562|ref|YP_003063979.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300768681|ref|ZP_07078578.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28272263|emb|CAD65174.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254046489|gb|ACT63282.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300493773|gb|EFK28944.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 223 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +K IR+ TQ ++A + ++ +ENG I + + Y+ S D + Sbjct: 2 NFSDNLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ ++ + + Sbjct: 62 LKGDLGMLKHYEAQSANN 79 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 39/84 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK IR+ K M+Q + L + T+S++E GR+ P+I +I +D Sbjct: 1 MNFSDNLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + GD ++ ++ N+ ++ Sbjct: 61 LLKGDLGMLKHYEAQSANNRRQQR 84 >gi|167768289|ref|ZP_02440342.1| hypothetical protein CLOSS21_02845 [Clostridium sp. SS2/1] gi|296450915|ref|ZP_06892663.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296878605|ref|ZP_06902610.1| XRE family transcriptional regulator [Clostridium difficile NAP07] gi|167709813|gb|EDS20392.1| hypothetical protein CLOSS21_02845 [Clostridium sp. SS2/1] gi|296260218|gb|EFH07065.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296430412|gb|EFH16254.1| XRE family transcriptional regulator [Clostridium difficile NAP07] Length = 135 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K+ R + TQ+ +A N ++ +EN I + L N Y IS D + Sbjct: 2 EIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIINVIELSNLYSISLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G+ + + + + + Sbjct: 62 LKGDEKMIEHLEESTNVVKSNQKMIWAI 89 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 42/84 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK+ R GM+Q + + + T+SN+E ++ P+I ++ + LD Sbjct: 1 MEIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIINVIELSNLYSISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + GDE ++ + +S++K Sbjct: 61 LLKGDEKMIEHLEESTNVVKSNQK 84 >gi|256397793|ref|YP_003119357.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364019|gb|ACU77516.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 200 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P R VG R++++R T ++A ES ++ E G ++ L L Sbjct: 12 PPTRRHVLDAVGPRLRELRHRRGLTLADLAERTGINESTLSRLEGGARKPTLELLLPLAE 71 Query: 82 EYEISFDWIY 91 Y + D + Sbjct: 72 VYAVPLDDLV 81 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + +R A+G RL+ +R +G++ + + G+ STLS E G P Sbjct: 3 TSKPPKTEQPPTRRHVLDAVGPRLRELRHRRGLTLADLAERTGINESTLSRLEGGARKPT 62 Query: 155 IKPARKIKQVTKKHLDWIY 173 ++ + +V LD + Sbjct: 63 LELLLPLAEVYAVPLDDLV 81 >gi|220930677|ref|YP_002507586.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220001005|gb|ACL77606.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 281 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 18/161 (11%), Positives = 48/161 (29%), Gaps = 17/161 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+++RK T + +A N S + ++E + ++ D++ Sbjct: 3 LGENIRELRKKKGLTIEALADELNSSYSTIGMYELDKRKPDYDMLCKFAEYFNVTVDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + K+ ++ +L +G+ TL + Sbjct: 63 GVKKKSILSASDLYKEFIEQKVPIEKL--------------ADNIGISADTLFKILKSEE 108 Query: 152 IPEIKPARKIKQVTKKH---LDWIYFGDEVIVPKSIKRAKG 189 ++ + + Y + + KS + + Sbjct: 109 GATEADYYRLCKWLGYSEEKAEEFYLRNSPLTNKSFRFTQN 149 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +RK KG++ L ST+ YE + P+ K + +D+ Sbjct: 1 MTLGENIRELRKKKGLTIEALADELNSSYSTIGMYELDKRKPDYDMLCKFAEYFNVTVDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|162448119|ref|YP_001621251.1| membrane-anchored DNA-binding protein [Acholeplasma laidlawii PG-8A] gi|161986226|gb|ABX81875.1| membrane-anchored DNA-binding protein, putative [Acholeplasma laidlawii PG-8A] Length = 231 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 38/86 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +RK +N TQ+E+ + +++ +E+ + + L Y+ S D++ Sbjct: 4 GQRLAKLRKDHNYTQEELGELLDVSRQSISKWESDQAFPETQKLIELSKLYQTSVDYLLG 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL 118 E + + +P+ + +L Sbjct: 64 NENEHTQSNIGDSTHTNEPFKMTPKL 89 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RL +RKD +Q E G+LL + ++S +E + PE + ++ ++ + +D+ Sbjct: 1 MTTGQRLAKLRKDHNYTQEELGELLDVSRQSISKWESDQAFPETQKLIELSKLYQTSVDY 60 Query: 172 IYFGDEVIVPKSI-KRAKGNQSSKKSKK 198 + + +I N+ K + K Sbjct: 61 LLGNENEHTQSNIGDSTHTNEPFKMTPK 88 >gi|28898552|ref|NP_798157.1| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus RIMD 2210633] gi|153836272|ref|ZP_01988939.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3810] gi|260365009|ref|ZP_05777580.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus K5030] gi|260879596|ref|ZP_05891951.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AN-5034] gi|260894929|ref|ZP_05903425.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus Peru-466] gi|260901062|ref|ZP_05909457.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ4037] gi|28806770|dbj|BAC60041.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149750547|gb|EDM61292.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3810] gi|308085951|gb|EFO35646.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus Peru-466] gi|308093441|gb|EFO43136.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AN-5034] gi|308110714|gb|EFO48254.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ4037] gi|308111572|gb|EFO49112.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus K5030] gi|328468839|gb|EGF39799.1| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus 10329] Length = 185 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I +RK + +Q+E+A A SA++ ENG S S+ + N + +S Sbjct: 5 EIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEF 64 Query: 91 YDGEVIDRRYEDV 103 + E V Sbjct: 65 FIFEQSSNDEVKV 77 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D + IG + +RK G+SQ E + G+ +S +S+ E G+ P + +KI V Sbjct: 1 MDNHEIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLS 60 Query: 169 LDWIYFGDEVIVPKS 183 L + ++ + Sbjct: 61 LSEFFIFEQSSNDEV 75 >gi|315223214|ref|ZP_07865075.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315187646|gb|EFU21400.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 135 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K+ R+ + TQ+ +A N ++ +E I Y L L + Y++S D + Sbjct: 2 EIGKKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G ++ + + Sbjct: 62 LKGYERMIQHLEDSTN 77 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R+ G++Q + L + T+SN+E + P+I ++ + + LD Sbjct: 1 MEIGKKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + G E ++ +S+KK Sbjct: 61 LLKGYERMIQHLEDSTNVVKSNKK 84 >gi|289551818|ref|YP_003472722.1| Transcriptional regulator, XRE family [Staphylococcus lugdunensis HKU09-01] gi|315660010|ref|ZP_07912868.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289181349|gb|ADC88594.1| Transcriptional regulator, XRE family [Staphylococcus lugdunensis HKU09-01] gi|315494911|gb|EFU83248.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 190 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +VG ++K R +Q+ +A ++ +EN I L + + + +S D Sbjct: 1 MINVGQQLKKYRIQQGYSQEVLAEKLYVSRQTISNWENNKSLPDIHNLLMMCSLFNVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 + G+V E V + Sbjct: 61 DLVKGDVYQMDREVVRKEMN 80 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 39/81 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +LK R +G SQ + L + T+SN+E +++P+I + + LD Sbjct: 1 MINVGQQLKKYRIQQGYSQEVLAEKLYVSRQTISNWENNKSLPDIHNLLMMCSLFNVSLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 + GD + + + R + N+ Sbjct: 61 DLVKGDVYQMDREVVRKEMNK 81 >gi|229150060|ref|ZP_04278283.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550] gi|228633359|gb|EEK89965.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550] Length = 149 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 2 NLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDEL 61 Query: 91 YDGEVI 96 G Sbjct: 62 IKGNQD 67 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 40/86 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MNLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + G++ K A+ K++ Sbjct: 61 LIKGNQDFKKKIHSDAEDEDFEKEND 86 >gi|23100309|ref|NP_693776.1| hypothetical protein OB2854 [Oceanobacillus iheyensis HTE831] gi|22778541|dbj|BAC14810.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 179 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 42/94 (44%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 I + + K ++ G +LK R+ +G SQ + + + ++S +E G+ P Sbjct: 11 TISLQLSNNETGKAMNNMFFGEKLKKEREKRGWSQDYLAEKVYVSRQSVSKWETGKNYPS 70 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAK 188 I+ + + +D + DE + K I+ +K Sbjct: 71 IEVIINLSDLFDITIDELLRSDEELKEKVIRDSK 104 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K R+ +Q +A +V+ +E G SI + L + ++I+ D + Sbjct: 30 FGEKLKKEREKRGWSQDYLAEKVYVSRQSVSKWETGKNYPSIEVIINLSDLFDITIDELL 89 Query: 92 DGEVI 96 + Sbjct: 90 RSDEE 94 >gi|313897568|ref|ZP_07831110.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957520|gb|EFR39146.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 302 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ +RK +Q+E+A + AV+ +EN L + N + ++ D++ Sbjct: 2 KFGEKLQKLRKEKGMSQEELAARLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVTMDYL 61 Query: 91 YDGEVIDRRYED 102 E D+ E Sbjct: 62 LKDEGGDQPQEQ 73 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L+ +RK+KGMSQ E L + +S +E + PE + I + +D+ Sbjct: 1 MKFGEKLQKLRKEKGMSQEELAARLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVTMDY 60 Query: 172 IYFGDEVIVPKS 183 + + P+ Sbjct: 61 LLKDEGGDQPQE 72 >gi|284008034|emb|CBA74134.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 232 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 32/83 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ R N TQ+ + ++ ++ +E+G + + + L ++ +W+ DG Sbjct: 4 ERIRQARNHNKMTQESLGKRIGVSKATISQWESGTTEPNGKNLVSLAKALGVTIEWLLDG 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGA 116 + + ++ Sbjct: 64 DEKNAEVNAQLANAKIIGNFAPW 86 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R M+Q GK +G+ +T+S +E G T P K + + ++W+ G Sbjct: 4 ERIRQARNHNKMTQESLGKRIGVSKATISQWESGTTEPNGKNLVSLAKALGVTIEWLLDG 63 Query: 176 DEVIVPKSIKRAK 188 DE + + A Sbjct: 64 DEKNAEVNAQLAN 76 >gi|167746452|ref|ZP_02418579.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662] gi|167653412|gb|EDR97541.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662] Length = 171 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G I +R+ TQ E+ V+ +ENG I L L E+EIS + Sbjct: 18 QKKIGAFIALLRRERGITQAELGERIGVTNKTVSRWENGNYMPDIATMLSLCEEFEISIN 77 Query: 89 WIYDGEVI-DRRYEDVTNKKRLDPYAIGARL 118 + G+ + + ++ +D + Sbjct: 78 ELLSGQRLGSDEFRKKADENVVDSLKREKAI 108 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 48/102 (47%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + LD IGA + +R+++G++Q E G+ +G+ N T+S +E G +P+I Sbjct: 4 SCYNKHKKEGMILDQKKIGAFIALLRRERGITQAELGERIGVTNKTVSRWENGNYMPDIA 63 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + + ++ + G + + K+A N ++ Sbjct: 64 TMLSLCEEFEISINELLSGQRLGSDEFRKKADENVVDSLKRE 105 >gi|239637276|ref|ZP_04678263.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] gi|239597113|gb|EEQ79623.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] Length = 189 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ +Q+ +A ++ +EN + + + + +S D + Sbjct: 2 NISHQIKLCRENKGYSQEYLAEKLYVSRQTISNWENERSYPDVHNLIMMCELFNVSLDDL 61 Query: 91 YDGEVIDRRYEDVTNK 106 GE+ + E V K Sbjct: 62 VQGEIHMEQRELVKKK 77 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 38/77 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R++KG SQ + L + T+SN+E R+ P++ + ++ LD Sbjct: 1 MNISHQIKLCRENKGYSQEYLAEKLYVSRQTISNWENERSYPDVHNLIMMCELFNVSLDD 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + G+ + + + + K Sbjct: 61 LVQGEIHMEQRELVKKK 77 >gi|266625424|ref|ZP_06118359.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288862669|gb|EFC94967.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 232 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +K +RK TQ+++A V+ +E GM + + + Y++ Sbjct: 4 KKIGEFLKVLRKEKGLTQEQLAESLLVSGRTVSRWETGMNMPDLSVLIQMAEFYDVEVKE 63 Query: 90 IYDGE 94 I DGE Sbjct: 64 ILDGE 68 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG LK +RK+KG++Q + + L + T+S +E G +P++ ++ + Sbjct: 1 MDTKKIGEFLKVLRKEKGLTQEQLAESLLVSGRTVSRWETGMNMPDLSVLIQMAEFYDVE 60 Query: 169 LDWIYFGD---EVIVPKSIKRAKGNQSSKKSKKDK 200 + I G+ E++ + + K +K+K Sbjct: 61 VKEILDGERKSEIMDKELKETLSKVADYNKLEKEK 95 >gi|163813936|ref|ZP_02205330.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC 27759] gi|158450806|gb|EDP27801.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC 27759] Length = 242 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+RI++ RK Q+E A AV+ +E + + + ++ + Sbjct: 4 IGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKAYPDLDRLVCICEILDVQVGELV 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + + ++ LK++R Sbjct: 64 YGKGEESETPEEVSRDGTSANNAV-HLKNLR 93 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG+R++ RK G++Q EF + +G+ +S +E+ + P++ I ++ + Sbjct: 1 MLLIGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKAYPDLDRLVCICEILDVQVG 60 Query: 171 WIYF--GDEVIVPKSIKR 186 + + G+E P+ + R Sbjct: 61 ELVYGKGEESETPEEVSR 78 >gi|228940714|ref|ZP_04103277.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973633|ref|ZP_04134215.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980191|ref|ZP_04140505.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407] gi|228779549|gb|EEM27802.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407] gi|228786094|gb|EEM34091.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818958|gb|EEM65020.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 277 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLVKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I V + LD++ +S ++ G SK+ + Sbjct: 61 KLIMIGNVFEVSLDYLLK---ETAEQSNEKENGYYVSKEMAEGY 101 >gi|229191715|ref|ZP_04318693.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876] gi|228591761|gb|EEK49602.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876] Length = 277 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 3/104 (2%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLGKKTKGDTHMGFGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I V + LD++ +S ++ G SK+ + Sbjct: 61 KLIMIGNVFEVSLDYLLK---ETAEQSNEKENGYYVSKEMAEGY 101 >gi|170016279|ref|YP_001723001.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169804961|gb|ACA83577.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 199 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK IR+A + TQ+++ + ++ +ENG I L + N+Y +S D + Sbjct: 3 IGVKIKMIREAFDLTQEQLGKELHLTRQTISSWENGKSYPGITDILSISNKYNVSLDELM 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 ++ + + + L+ I + + ++ + + Sbjct: 63 KEDIELIGHFEAIDHS-LNKQKILYAIAYVANVLFLAVYILANYMHV 108 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K IR+ ++Q + GK L + T+S++E G++ P I I LD + D Sbjct: 7 IKMIREAFDLTQEQLGKELHLTRQTISSWENGKSYPGITDILSISNKYNVSLDELMKED 65 >gi|293384665|ref|ZP_06630522.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|293389067|ref|ZP_06633541.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|312908458|ref|ZP_07767414.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312979359|ref|ZP_07791054.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|291078027|gb|EFE15391.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|291081593|gb|EFE18556.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|310625570|gb|EFQ08853.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311287864|gb|EFQ66420.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 204 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 41/107 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +R N TQ+++A +A++ +E+G +I + + ++ D + Sbjct: 2 EFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFFVTIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 GE + E Y + + + +G +G Sbjct: 62 LSGEELITLAETENRSNLKKIYNYIYGILDMMAVAFIFLPLYGNSVG 108 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +R K ++Q + + L + + +S +E G+ P I+ + I + +D Sbjct: 1 MEFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFFVTIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + G+E+I + N+S+ K + Sbjct: 61 LLSGEELITLAETE----NRSNLKKIYNY 85 >gi|158522276|ref|YP_001530146.1| XRE family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511102|gb|ABW68069.1| transcriptional regulator, XRE family [Desulfococcus oleovorans Hxd3] Length = 433 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 1/102 (0%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK++R +Q +A G S ++ EN S+ + + + + Sbjct: 252 DLGLRIKELRTKKGMSQVALARGIGVTPSTISQVENNQIFPSVPALIKMSEILSVDVGYF 311 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + + + G + + + + + Sbjct: 312 FQTGAGSAPRVVFSEFEAMPSPVPGMA-RRLISCRRLMPEDM 352 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K +R KGMSQ+ + +G+ ST+S E + P + K+ ++ + + + Sbjct: 257 IKELRTKKGMSQVALARGIGVTPSTISQVENNQIFPSVPALIKMSEILSVDVGYFF 312 >gi|308173224|ref|YP_003919929.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307606088|emb|CBI42459.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|328553856|gb|AEB24348.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens TA208] gi|328911289|gb|AEB62885.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens LL3] Length = 112 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R TQ+E+A + + +ENG L + + +S D++ Sbjct: 2 IGGRLKSLRGKK--TQEEVANHIGVSRARYSHYENGRSEPDYETLQKLADYFNVSTDYLL 59 Query: 92 DGEVIDRRY 100 G+ Sbjct: 60 TGKEPSDED 68 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LKS+R K +Q E +G+ + S+YE GR+ P+ + +K+ D++ G E Sbjct: 6 LKSLRGKK--TQEEVANHIGVSRARYSHYENGRSEPDYETLQKLADYFNVSTDYLLTGKE 63 Query: 178 VIVP 181 Sbjct: 64 PSDE 67 >gi|268610943|ref|ZP_06144670.1| DNA-binding phage protein [Ruminococcus flavefaciens FD-1] Length = 91 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD- 92 R+K++R + Q E + + V+ +ENG SI + + + +S D++ Sbjct: 4 ERVKELRNSLGINQVEFSKKIGVTKQCVSNWENGYIQPSIDMLIKIAKTFSVSTDYLLGI 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + + E +TN++ L I ++ Sbjct: 64 NDNPNLNVEGLTNEQILHIRNIIDDIRK 91 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+K +R G++Q+EF K +G+ +SN+E G P I KI + D++ Sbjct: 1 MFYERVKELRNSLGINQVEFSKKIGVTKQCVSNWENGYIQPSIDMLIKIAKTFSVSTDYL 60 Query: 173 YFGDE 177 ++ Sbjct: 61 LGIND 65 >gi|89893492|ref|YP_516979.1| hypothetical protein DSY0746 [Desulfitobacterium hafniense Y51] gi|89332940|dbj|BAE82535.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 134 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 33/72 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RK +Q+++A N AV+ +E+ + + L + + IS D + Sbjct: 8 EKLRVLRKEKGLSQEQLAEMVNVSRQAVSKWESEQAYPELDKLILLSDFFNISLDDLIKD 67 Query: 94 EVIDRRYEDVTN 105 + + ++ N Sbjct: 68 KNPEDVAKNNDN 79 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L+ +RK+KG+SQ + +++ + +S +E + PE+ + LD Sbjct: 4 MSFSEKLRVLRKEKGLSQEQLAEMVNVSRQAVSKWESEQAYPELDKLILLSDFFNISLDD 63 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + P+ + + N SK+ ++ Sbjct: 64 LIKDK---NPEDVAKNNDNSDSKEDDEE 88 >gi|89894695|ref|YP_518182.1| hypothetical protein DSY1949 [Desulfitobacterium hafniense Y51] gi|89334143|dbj|BAE83738.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 218 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I ++R N +Q ++A +V+ +EN + + + + IS D + Sbjct: 13 LGEKIYELRTKNAMSQGDLANTLEVSRQSVSKWENNTSVPELDKLVKMSEVFSISLDELI 72 Query: 92 DGEVIDRRYEDVTNK 106 GE + + + Sbjct: 73 RGEKTEEMQRETQSP 87 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +R MSQ + L + ++S +E ++PE+ K+ +V LD Sbjct: 11 MTLGEKIYELRTKNAMSQGDLANTLEVSRQSVSKWENNTSVPELDKLVKMSEVFSISLDE 70 Query: 172 IYFGDEVIV 180 + G++ Sbjct: 71 LIRGEKTEE 79 >gi|315612296|ref|ZP_07887210.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315689|gb|EFU63727.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 167 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 39/85 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G I + L ++++ D++ Sbjct: 2 KLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 E ++ V ++ D Y Sbjct: 62 LLDENSEKSSTAVILEEDKDNYYKE 86 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 41/82 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PEI+ ++ ++ + D+ Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + + + + ++ + Sbjct: 61 LLLDENSEKSSTAVILEEDKDN 82 >gi|229047313|ref|ZP_04192912.1| Helix-turn-helix domain protein [Bacillus cereus AH676] gi|228724055|gb|EEL75401.1| Helix-turn-helix domain protein [Bacillus cereus AH676] Length = 277 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLGKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ +++ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNENVD 89 >gi|196037631|ref|ZP_03104942.1| transcriptional repressor [Bacillus cereus NVH0597-99] gi|228913713|ref|ZP_04077339.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228944755|ref|ZP_04107119.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090075|ref|ZP_04221326.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42] gi|196031873|gb|EDX70469.1| transcriptional repressor [Bacillus cereus NVH0597-99] gi|228693305|gb|EEL47015.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42] gi|228814927|gb|EEM61184.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228845905|gb|EEM90930.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 149 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|326941347|gb|AEA17243.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 262 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + +S ++ G SK+ + Sbjct: 61 LLK---ETAEQSNEKENGYYVSKEMAEGY 86 >gi|226526965|ref|YP_002790984.1| transcriptional regulator [Lactobacillus brevis] gi|226442557|dbj|BAH56427.1| transcriptional regulator [Lactobacillus brevis] Length = 210 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ ++K R A N TQ E+A + ++ +EN + L + Y + D + Sbjct: 2 NISQKLKQCRSAKNLTQAEVAEQLHVSRKTISGWENERSYPDPTSLIKLSDLYHVPIDDL 61 Query: 91 YDGE-VIDRRYEDVTNKKRLDPYAIGARL 118 E ++ + N +L + Sbjct: 62 LRDERLLKHYDKANKNDNKLKLIVRVEYI 90 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +LK R K ++Q E + L + T+S +E R+ P+ K+ + +D Sbjct: 1 MNISQKLKQCRSAKNLTQAEVAEQLHVSRKTISGWENERSYPDPTSLIKLSDLYHVPIDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + DE ++ K K + K Sbjct: 61 LLR-DERLLKHYDKANKNDNKLK 82 >gi|121534819|ref|ZP_01666639.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] gi|121306614|gb|EAX47536.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] Length = 215 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R+ TQ+EMA +E L + + +S D++ Sbjct: 2 LGERLKSLREQKGITQQEMADILGIARGTYAHYEIDRREPDNATLSRLADFFGVSVDYLL 61 Query: 92 DGEVIDRRYED 102 + D Sbjct: 62 GRDKPKPSITD 72 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 35/66 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RLKS+R+ KG++Q E +LG+ T ++YE R P+ ++ +D++ Sbjct: 1 MLGERLKSLREQKGITQQEMADILGIARGTYAHYEIDRREPDNATLSRLADFFGVSVDYL 60 Query: 173 YFGDEV 178 D+ Sbjct: 61 LGRDKP 66 >gi|116669150|ref|YP_830083.1| transcriptional regulator [Arthrobacter sp. FB24] gi|116609259|gb|ABK01983.1| transcriptional regulator [Arthrobacter sp. FB24] Length = 495 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RKA T +++ S ++L ENG + L +S D + Sbjct: 27 LGRRVRHLRKAAAMTLDDLSAAVGTAPSQLSLIENGKREPKLGLLQQLAAALNVSIDQLL 86 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA--RLKSIRKDKGMSQIEFGKLLGM 138 E +RR +R + L IR + ++G+ Sbjct: 87 GAEPPNRRAALEIELERYQRSPLYESLNLPKIRISSRLPMDVLESMVGL 135 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 32/84 (38%) Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 LD ++G R++ +RK M+ + +G S LS E G+ Sbjct: 6 WNRKAATPPSSPATAELDVISLGRRVRHLRKAAAMTLDDLSAAVGTAPSQLSLIENGKRE 65 Query: 153 PEIKPARKIKQVTKKHLDWIYFGD 176 P++ +++ +D + + Sbjct: 66 PKLGLLQQLAAALNVSIDQLLGAE 89 >gi|303241851|ref|ZP_07328346.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590626|gb|EFL60379.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 223 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 6/170 (3%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R+ + +QK++A AV +E L + + +S D+I G Sbjct: 7 LKQLREQSRLSQKDIADYLGITRQAVASYELAKREPDYEILKKLADYFGVSIDYIL-GRA 65 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 R +T +D K + +D + + L Y +G +P + Sbjct: 66 NCRDLNALTVGNNIDLIKGNFTYKELSQDISIKVGAL-----IFPDMLELYAKGERMPFV 120 Query: 156 KPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + + + K + Y + + K + S++ + +K P Sbjct: 121 GTIKILAKYAKVRDTFFYSYNTPESYEKEKELYLLEVSQQKQTEKNEDAP 170 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + + LK +R+ +SQ + LG+ +++YE + P+ + +K+ +D+ Sbjct: 1 MSFASMLKQLREQSRLSQKDIADYLGITRQAVASYELAKREPDYEILKKLADYFGVSIDY 60 Query: 172 IY 173 I Sbjct: 61 IL 62 >gi|330685264|gb|EGG96925.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU121] Length = 189 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ +Q+ +A ++ +EN + + + + +S D + Sbjct: 2 NISHQIKLCRENKGYSQEYLAEKLYVSRQTISNWENERSYPDVHNLIMMCELFNVSLDDL 61 Query: 91 YDGEVIDRRYEDVTNK 106 GE+ + E V K Sbjct: 62 VQGEIHMEQRELVKKK 77 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 38/77 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R++KG SQ + L + T+SN+E R+ P++ + ++ LD Sbjct: 1 MNISHQIKLCRENKGYSQEYLAEKLYVSRQTISNWENERSYPDVHNLIMMCELFNVSLDD 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + G+ + + + + K Sbjct: 61 LVQGEIHMEQRELVKKK 77 >gi|167767646|ref|ZP_02439699.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1] gi|167710663|gb|EDS21242.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1] gi|291560781|emb|CBL39581.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 204 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RK+ +Q+E+A AV+ +E+ + + + + + + ++ D+I Sbjct: 2 NMADRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDYI 61 Query: 91 YDG 93 G Sbjct: 62 LKG 64 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK KG+SQ E +G+ +S +E ++ P+++ + D+ Sbjct: 1 MNMADRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 I G E + K K + Sbjct: 61 ILKGIEPVADKEQKNKE 77 >gi|212704889|ref|ZP_03313017.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] gi|212671660|gb|EEB32143.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] Length = 183 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 38/102 (37%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T ++ + +G I RKA TQ+E+A +V +E G S I LR Sbjct: 1 MTEKMTEGRIRLGQEILRRRKAMGMTQEELASRMGVSRQSVAKWETGQSSPDIDRLSLLR 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + + S D + D + A +++ R Sbjct: 61 DVLQTSLDELIVPAGRDPIPAPAPPAEDSVRPAQAGPVRTFR 102 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RK GM+Q E +G+ +++ +E G++ P+I ++ V + LD + Sbjct: 14 QEILRRRKAMGMTQEELASRMGVSRQSVAKWETGQSSPDIDRLSLLRDVLQTSLDELI 71 >gi|262281939|ref|ZP_06059708.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262262393|gb|EEY81090.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 210 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+ +RKA +Q+ +A AV+ +E+ + + + + +E++ D++ Sbjct: 2 KLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + + Sbjct: 62 LKGIEPVVQKEEEQSIEH 79 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + + D+ Sbjct: 1 MKLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIEPVVQKEEEQS 76 >gi|228907545|ref|ZP_04071402.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL 200] gi|228852037|gb|EEM96834.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL 200] Length = 146 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 IGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELI 62 Query: 92 DGEVIDRRY 100 G+ + Sbjct: 63 KGKQNIKEK 71 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSIGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPK 182 + G + I K Sbjct: 61 LIKGKQNIKEK 71 >gi|85706378|ref|ZP_01037472.1| transcriptional regulator, XRE family protein [Roseovarius sp. 217] gi|85669151|gb|EAQ24018.1| transcriptional regulator, XRE family protein [Roseovarius sp. 217] Length = 468 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 41/91 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ +TQ +MA N S +NL EN S S++ + L + Y + + + Sbjct: 6 IGPRLRQLRRDRGQTQADMARMLNVSPSYINLLENNQRSLSVQMLMSLADAYAVDWRDLT 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 E R + + + L+ +R Sbjct: 66 RDETARRVADLRLAVRDPVFASDRPDLQELR 96 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L+ +R+D+G +Q + ++L + S ++ E + ++ + DW Sbjct: 10 LRQLRRDRGQTQADMARMLNVSPSYINLLENNQRSLSVQMLMSLADAYAV--DW 61 >gi|206968685|ref|ZP_03229640.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] gi|206735726|gb|EDZ52884.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] Length = 262 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + +S ++ G SK+ + Sbjct: 61 LLK---ETAEQSNEKENGYYVSKEMAEGY 86 >gi|327380975|gb|AEA52451.1| Transcriptional regulator [Lactobacillus casei LC2W] Length = 205 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 40/83 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +L IR M+Q+ + L + T+SN+E R +P+++ +I ++ + Sbjct: 1 MSSMNFSKQLHQIRMAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 LD + D + K I +K ++ Sbjct: 61 LDTLILDDPKLNEKLIHDSKISR 83 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 8/132 (6%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ IR A+ TQ +A + V+ +EN + + +E+S D + Sbjct: 5 NFSKQLHQIRMAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDTL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM--------SQIEFGKLLGMPNST 142 + +K + ++ GM +L+ Sbjct: 65 ILDDPKLNEKLIHDSKISRHQMIMAVMTTAVAMMSGMAATTLFGFFPQWLAQLIWWSYVA 124 Query: 143 LSNYEQGRTIPE 154 + P+ Sbjct: 125 VLFLFSYMLSPK 136 >gi|220911489|ref|YP_002486798.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858367|gb|ACL38709.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 504 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 2/109 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK T ++ S ++L ENG + +L +S D + Sbjct: 36 LGRRVRHLRKQAGLTLDGLSAAVGTAPSQLSLIENGKREPKLTLLQHLAAALNVSIDQLL 95 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA--RLKSIRKDKGMSQIEFGKLLGM 138 E RR +R + L IR + +G+ Sbjct: 96 GAEPPSRRAALEIELERYQRGPLYESLNLPKIRISSRLPLDVLEAQVGL 144 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 + LD A+G R++ +RK G++ +G S LS E G+ P++ Sbjct: 21 QPSSPGAGAELDVIALGRRVRHLRKQAGLTLDGLSAAVGTAPSQLSLIENGKREPKLTLL 80 Query: 159 RKIKQVTKKHLDWIYFGD 176 + + +D + + Sbjct: 81 QHLAAALNVSIDQLLGAE 98 >gi|29376851|ref|NP_816005.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227517053|ref|ZP_03947102.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227553889|ref|ZP_03983936.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|255975238|ref|ZP_05425824.1| predicted protein [Enterococcus faecalis T2] gi|307285321|ref|ZP_07565465.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|29344316|gb|AAO82075.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227075500|gb|EEI13463.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227176973|gb|EEI57945.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|255968110|gb|EET98732.1| predicted protein [Enterococcus faecalis T2] gi|306502898|gb|EFM72160.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|315574409|gb|EFU86600.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315580117|gb|EFU92308.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] Length = 309 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 11/153 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYALYLRNEYEISF 87 +G RI++IRK +T ++ N A VN +E G I + + +++ Sbjct: 157 MGKRIQEIRKNRGETLEKFGK--NFTRPAGKNVVNRWEKGTNIPDIERLMNVAYLGKVAV 214 Query: 88 DWIYDGEVID---RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG--MPNST 142 +I GE ++ ++ ++LD + +G RL+ IR+D + + +FGK + + Sbjct: 215 PYILYGETFSKMLKKGSRISKFEKLDSFRMGLRLRKIRRDYRLEREDFGKFFSPPITKWS 274 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + YE G+ IP + + K L+++ +G Sbjct: 275 MDKYENGKDIPNTDRIIQYAYIGKVSLNFLIYG 307 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 15/140 (10%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G +K+ R + TQ+E+A +N ++ + +ENG+ S S + L + Sbjct: 5 KDELIKMGNHLKEARLSKQLTQEELARLSNISQATIVKYENGLRSISKKNDRILSDVLG- 63 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 E + L+ + S+ + K LG+ S L+ Sbjct: 64 --------------AESFIKDMIQRKQQVLIDLEKYQTKNIFSREDLSKKLGIEISLLNK 109 Query: 146 YEQGRTIPEIKPARKIKQVT 165 + KI Q+ Sbjct: 110 FLNQSRPLSKNAIVKITQLL 129 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 58/136 (42%), Gaps = 9/136 (6%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 ++++++ S +N F N S + + I + ++ + Sbjct: 91 FSREDLSKKLGIEISLLNKFLNQSRPLSKNAIVKITQLLSNEGKEIL---MDIKQEDGSF 147 Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST----LSNYEQGRTIPEIKPARK 160 +D A+G R++ IRK++G + +FGK ++ +E+G IP+I+ Sbjct: 148 KLPIIDKIAMGKRIQEIRKNRGETLEKFGK--NFTRPAGKNVVNRWEKGTNIPDIERLMN 205 Query: 161 IKQVTKKHLDWIYFGD 176 + + K + +I +G+ Sbjct: 206 VAYLGKVAVPYILYGE 221 Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +G LK R K ++Q E +L + +T+ YE G K R + V Sbjct: 9 IKMGNHLKEARLSKQLTQEELARLSNISQATIVKYENGLRSISKKNDRILSDVLG 63 >gi|291531495|emb|CBK97080.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 301 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT I+ RK N TQ+++A N V+ +E+ + L + + + D + Sbjct: 3 LGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDELI 62 Query: 92 DGEVIDRRYEDVTNK-KRLDPYAIGARL 118 G + ED K ++ + L Sbjct: 63 KGSAEENFTEDAAGYDKEMNSFTRAICL 90 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ RK K M+Q + + + + T+S +E PE + LD Sbjct: 1 MSLGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDE 60 Query: 172 IYFG--DEVIVPKSIKRAKGNQSSKKS 196 + G +E + K S ++ Sbjct: 61 LIKGSAEENFTEDAAGYDKEMNSFTRA 87 >gi|228477808|ref|ZP_04062436.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|322374168|ref|ZP_08048701.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] gi|228250500|gb|EEK09714.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|321276873|gb|EFX53945.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] Length = 150 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 35/79 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++RK+ TQ +++ + + + +ENG S+ + L ++ + D++ Sbjct: 7 FGDRLKELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPSLEAVVKLAKLFDTTTDYLL 66 Query: 92 DGEVIDRRYEDVTNKKRLD 110 + R+D Sbjct: 67 GKTIYSTLDVVPHPITRID 85 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + + G RLK +RK K ++Q++ +++ + T S +E G P ++ K+ ++ Sbjct: 1 MFNNNSFGDRLKELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPSLEAVVKLAKLFDT 60 Query: 168 HLDWIY 173 D++ Sbjct: 61 TTDYLL 66 >gi|229018822|ref|ZP_04175669.1| Helix-turn-helix domain protein [Bacillus cereus AH1273] gi|229025063|ref|ZP_04181491.1| Helix-turn-helix domain protein [Bacillus cereus AH1272] gi|228736269|gb|EEL86836.1| Helix-turn-helix domain protein [Bacillus cereus AH1272] gi|228742443|gb|EEL92596.1| Helix-turn-helix domain protein [Bacillus cereus AH1273] Length = 277 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MLTYNLVKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ ++++ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNENVE 89 >gi|56419029|ref|YP_146347.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] gi|56378871|dbj|BAD74779.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] Length = 120 Score = 79.6 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 30/88 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R T ++MA + +ENG I L + ++ D++ Sbjct: 4 NRLKMLRLQKKLTHQDMADFLGITRQGYSKYENGQSQPDIDTINKLAEFFNVTTDYLLGR 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E + L +G K + Sbjct: 64 TDDPTPPEQDDIPEELKDPELGLFFKEL 91 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK +R K ++ + LG+ S YE G++ P+I K+ + D++ Sbjct: 1 MFPNRLKMLRLQKKLTHQDMADFLGITRQGYSKYENGQSQPDIDTINKLAEFFNVTTDYL 60 Query: 173 YFGDEVIVP 181 + P Sbjct: 61 LGRTDDPTP 69 >gi|325833019|ref|ZP_08165646.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485736|gb|EGC88201.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 242 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 28/76 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+ +R+ +Q+E+A AV+ +E S + L Y +S D + Sbjct: 14 EIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVSLDDL 73 Query: 91 YDGEVIDRRYEDVTNK 106 + K Sbjct: 74 LRIDEDVVDDVAFEEK 89 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RL ++R+++G SQ E + LG+ +S +E+ + P+ + ++ LD + Sbjct: 14 EIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVSLDDL 73 Query: 173 YFGDEVIVPKSIKRAK 188 DE +V K Sbjct: 74 LRIDEDVVDDVAFEEK 89 >gi|194467259|ref|ZP_03073246.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454295|gb|EDX43192.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 203 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK R TQ E+A + ++ +E G + + + + Y+IS D + G+ Sbjct: 7 IKKQRNNLGFTQAEIAEKLHVTRQTISNWEQGKSYPDLDTLVKISDIYKISIDTLLKGDK 66 Query: 96 IDRRYEDVTN 105 ++Y D Sbjct: 67 NLKKYLDQGK 76 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K R + G +Q E + L + T+SN+EQG++ P++ KI + K +D Sbjct: 1 MEFRNYIKKQRNNLGFTQAEIAEKLHVTRQTISNWEQGKSYPDLDTLVKISDIYKISIDT 60 Query: 172 IYFGDEVIVP 181 + GD+ + Sbjct: 61 LLKGDKNLKK 70 >gi|196044284|ref|ZP_03111520.1| transcriptional repressor [Bacillus cereus 03BB108] gi|225862972|ref|YP_002748350.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|229183334|ref|ZP_04310562.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1] gi|196024923|gb|EDX63594.1| transcriptional repressor [Bacillus cereus 03BB108] gi|225790632|gb|ACO30849.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228600118|gb|EEK57710.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1] Length = 149 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|42782702|ref|NP_979949.1| helix-turn-helix domain-containing protein [Bacillus cereus ATCC 10987] gi|42738628|gb|AAS42557.1| helix-turn-helix domain protein [Bacillus cereus ATCC 10987] Length = 262 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIK 185 + +++ Sbjct: 61 LLKETAEQSNENVD 74 >gi|310640682|ref|YP_003945440.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245632|gb|ADO55199.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 122 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 34/83 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + GTRI ++R+ Q+E+A +A++ +E L + +E++ D++ Sbjct: 2 NYGTRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFETLTKLADIFEVTIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 D ++ +D Sbjct: 62 VGRTSHPTAILDSDVREFVDQLE 84 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+ +R+ KG+ Q E + LG+ + LS+YE+ R P+ + K+ + + +D+ Sbjct: 1 MNYGTRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFETLTKLADIFEVTIDY 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|229552822|ref|ZP_04441547.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229313804|gb|EEN79777.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 223 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 36/90 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + ++K R+ ++ TQ ++ + ++ +ENG I + + + Y+IS Sbjct: 6 EEKMQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQIS 65 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 D + + ++ + +K+ Sbjct: 66 LDQLLREDQDIVQHYETISKQAQRYQKYFQ 95 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ ++Q++ G L + T+S++E GR+ P+I I + + LD Sbjct: 9 MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ 68 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ IV +K Q +K Sbjct: 69 LLREDQDIVQHYETISKQAQRYQK 92 >gi|255100973|ref|ZP_05329950.1| putative regulatory protein [Clostridium difficile QCD-63q42] Length = 122 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 37/97 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +K +G RIK R N TQ+ +A V+ E G S S+ + + N Sbjct: 1 MELDFKAIGKRIKIARIRTNLTQETVADKIGVTPQHVSNIETGNSSVSLTTLVAIANLLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S D + V+ + + + ++ + Sbjct: 61 VSVDELLCDTVLKSKAVFIKEADDIFKDCNEYEVRVL 97 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD AIG R+K R ++Q +G+ +SN E G + + I + Sbjct: 1 MELDFKAIGKRIKIARIRTNLTQETVADKIGVTPQHVSNIETGNSSVSLTTLVAIANLLN 60 Query: 167 KHLDWIY 173 +D + Sbjct: 61 VSVDELL 67 >gi|291556308|emb|CBL33425.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 301 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT I+ RK N TQ+++A N V+ +E+ + L + + + D + Sbjct: 3 LGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDELI 62 Query: 92 DGEVIDRRYEDVTNK-KRLDPYAIGARL 118 G + ED K ++ + L Sbjct: 63 KGSAEENFTEDAAGYDKEMNSFTSAICL 90 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ RK K M+Q + + + + T+S +E PE + LD Sbjct: 1 MSLGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDE 60 Query: 172 IYFG 175 + G Sbjct: 61 LIKG 64 >gi|291539377|emb|CBL12488.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis XB6B4] Length = 393 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 38/131 (29%), Gaps = 8/131 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK R Q E A AV+ +E G SI + ++S D + Sbjct: 18 MAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDTLI 77 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 GE D + +S R K + G +T+ E Sbjct: 78 -GENSDSEKMMIGIDGGGTKTEFVLFSESGRILKRIILD------GCNPNTVGMEEAMNI 130 Query: 152 -IPEIKPARKI 161 I KI Sbjct: 131 LQLGIDTLMKI 141 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + D + +K+ R +G++Q EF + LG+ +S +E G++ P I+ I ++ Sbjct: 11 EVFDIMTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILD 70 Query: 167 KHLDWIYFGDEVIVPKSI 184 +D + + I Sbjct: 71 VSIDTLIGENSDSEKMMI 88 >gi|229101738|ref|ZP_04232455.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28] gi|228681686|gb|EEL35846.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28] Length = 149 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|167749809|ref|ZP_02421936.1| hypothetical protein EUBSIR_00777 [Eubacterium siraeum DSM 15702] gi|167657292|gb|EDS01422.1| hypothetical protein EUBSIR_00777 [Eubacterium siraeum DSM 15702] Length = 301 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT I+ RK N TQ+++A N V+ +E+ + L + + + D + Sbjct: 3 LGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDELI 62 Query: 92 DGEVIDRRYEDVTNK-KRLDPYAIGARL 118 G + ED K ++ + L Sbjct: 63 KGSAEENFTEDAAGYDKEMNSFTSAICL 90 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ RK K M+Q + + + + T+S +E PE + LD Sbjct: 1 MSLGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDE 60 Query: 172 IYFG 175 + G Sbjct: 61 LIKG 64 >gi|154250733|ref|YP_001411557.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154683|gb|ABS61900.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 204 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 1/115 (0%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 PE + D+G R++++R + +Q+E+A A ++L E S S+ + + Sbjct: 17 APEGEEKGPDIGARLRELRVMHGFSQRELAKRAGVTNGTISLIEQNRISPSVGSLKKVLD 76 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI-RKDKGMSQIEFGKL 135 + IS ++ R K+ + L+ + R +G + + Sbjct: 77 GFPISIADFLTLDMKPRAKVFYQAKELREIAGGPVSLRLLGRDTRGRAIQMMHER 131 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 31/74 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ARL+ +R G SQ E K G+ N T+S EQ R P + +K+ + Sbjct: 29 ARLRELRVMHGFSQRELAKRAGVTNGTISLIEQNRISPSVGSLKKVLDGFPISIADFLTL 88 Query: 176 DEVIVPKSIKRAKG 189 D K +AK Sbjct: 89 DMKPRAKVFYQAKE 102 >gi|58336583|ref|YP_193168.1| transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227903134|ref|ZP_04020939.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC 4796] gi|58253900|gb|AAV42137.1| putative transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227869120|gb|EEJ76541.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC 4796] Length = 321 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 34/79 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I +RK ++ +Q+ +A N AV+ +E+ I + L + ++ D++ Sbjct: 2 KLGQKITQLRKKSHLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 T +++ Sbjct: 62 LKNGTPSFELPGKTTEEKQ 80 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 35/88 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +RK +SQ + + + +S +E ++IP+I+ + ++ D+ Sbjct: 1 MKLGQKITQLRKKSHLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + K + Q K D Sbjct: 61 LLKNGTPSFELPGKTTEEKQIKKLPSID 88 >gi|28210633|ref|NP_781577.1| putative transcriptional regulator [Clostridium tetani E88] gi|28203071|gb|AAO35514.1| putative transcriptional regulator [Clostridium tetani E88] Length = 126 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R++ +RK N +Q+++A A++ +E+G + I + L Y +S D+I Sbjct: 2 EISERLQQLRKLANYSQEQLADMLGVSRQAISKWESGQSNPDISNVIKLSGIYNVSTDYI 61 Query: 91 YDGEVIDRRYEDVT 104 G+ + + Sbjct: 62 LIGKEPNSELTENK 75 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I RL+ +RK SQ + +LG+ +S +E G++ P+I K+ + D+ Sbjct: 1 MEISERLQQLRKLANYSQEQLADMLGVSRQAISKWESGQSNPDISNVIKLSGIYNVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 I G E + N+ K K +KK+ P Sbjct: 61 ILIGKEPNSELT-----ENKMETKCKVEKKTYIP 89 >gi|149202181|ref|ZP_01879154.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035] gi|149144279|gb|EDM32310.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035] Length = 468 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ +TQ +MA + S +NL EN S S++ + + + Y + + + Sbjct: 6 IGPRLRQLRRERGQTQADMARKLDVSPSYINLLENNQRSLSVQMLMSIADAYAVDWRDLT 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 E R + + L+ +R Sbjct: 66 RDETARRVADLRHAVRDPVFALDRPDLQELR 96 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L+ +R+++G +Q + + L + S ++ E + ++ I DW Sbjct: 10 LRQLRRERGQTQADMARKLDVSPSYINLLENNQRSLSVQMLMSIADAYAV--DW 61 >gi|227551856|ref|ZP_03981905.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257895552|ref|ZP_05675205.1| repressor protein [Enterococcus faecium Com12] gi|293568950|ref|ZP_06680263.1| prophage Lp1 protein 8 [Enterococcus faecium E1071] gi|294619352|ref|ZP_06698816.1| prophage Lp1 protein 8 [Enterococcus faecium E1679] gi|227179028|gb|EEI60000.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257832117|gb|EEV58538.1| repressor protein [Enterococcus faecium Com12] gi|291588383|gb|EFF20218.1| prophage Lp1 protein 8 [Enterococcus faecium E1071] gi|291594401|gb|EFF25814.1| prophage Lp1 protein 8 [Enterococcus faecium E1679] Length = 123 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++RK + TQ E+A + + + +E G + L + + +S D++ Sbjct: 4 DRIKELRKQHGWTQAELAKKMSVSQQTIGSWEVGRAEPNSEALTKLAHLFNVSTDYLLSN 63 Query: 94 EVIDRRYEDVTNKKRLDPY 112 + + LD Sbjct: 64 HKTP-EWATKEDIIELDKL 81 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+K +RK G +Q E K + + T+ ++E GR P + K+ + D++ Sbjct: 1 MLKDRIKELRKQHGWTQAELAKKMSVSQQTIGSWEVGRAEPNSEALTKLAHLFNVSTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|88854989|ref|ZP_01129654.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1] gi|88815517|gb|EAR25374.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1] Length = 489 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ +R T ++ N+ S V++ ENG + L +++S D + Sbjct: 20 VGRRIRQLRTDRGLTLDDLGAALNRAASQVSVIENGKRELKLSELQKLARIFDVSVDDLL 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E RR +R + L Sbjct: 80 NAEPPSRRAALEIALERAQRGPLYNSL 106 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 38/82 (46%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + R ++ LD +G R++ +R D+G++ + G L S +S E G+ + Sbjct: 1 MTPRTLSTADDEDMLDSLTVGRRIRQLRTDRGLTLDDLGAALNRAASQVSVIENGKRELK 60 Query: 155 IKPARKIKQVTKKHLDWIYFGD 176 + +K+ ++ +D + + Sbjct: 61 LSELQKLARIFDVSVDDLLNAE 82 >gi|312870861|ref|ZP_07730966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|312872168|ref|ZP_07732241.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311092252|gb|EFQ50623.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311093551|gb|EFQ51890.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] Length = 438 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 18/165 (10%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + IK K ++ ++ N + + I + N + IS Sbjct: 109 ETMAQNIKYYLKQKGVSRHKLCDDLNIKYTTFCTWLQADAYPRIDKIEMMANYFNISKAN 168 Query: 90 IYDGEVIDRRYEDVTNKKRLDPY-----------------AIGARLKSIRKDKGMSQIEF 132 + + + + + + LK +RK M Q+E Sbjct: 169 LVEDKDAIKNDITTIYNQLHEKRQAKVYNYAREQLKEVVDMFSTNLKYLRKKYNMEQLEL 228 Query: 133 GKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LG ST+S +E+G P+IK +I + LD + D Sbjct: 229 AYKLGRKSGSTISEWEKGSYTPKIKVLAQIADIFHVDLDDLMNKD 273 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 61/188 (32%), Gaps = 17/188 (9%) Query: 27 QYWKDVG---TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 QY++++ T++ + + Q ++ + ++ +N + G ++ L + + Sbjct: 7 QYYENLNYFNTQLNHLMSVHGTKQVDLVNALDIPKTTINGYVKGTSLPNMGNLQKLADYF 66 Query: 84 EISFDWI-------------YDGEVIDRRYEDVTNKKRLDPYAIGAR-LKSIRKDKGMSQ 129 + ++ D R + LD A+ +K K KG+S+ Sbjct: 67 NTLKSDLDLRFKKDADKHLPVYNQLTDIRKHKMIKMSNLDNKETMAQNIKYYLKQKGVSR 126 Query: 130 IEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKG 189 + L + +T + Q P I + + + I Sbjct: 127 HKLCDDLNIKYTTFCTWLQADAYPRIDKIEMMANYFNISKANLVEDKDAIKNDITTIYNQ 186 Query: 190 NQSSKKSK 197 +++K Sbjct: 187 LHEKRQAK 194 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 43/105 (40%), Gaps = 1/105 (0%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLR 80 ++++ T +K +RK N Q E+A + S ++ +E G + I+ + Sbjct: 200 REQLKEVVDMFSTNLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYTPKIKVLAQIA 259 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + + D + + ++ + + + + + L R+ K Sbjct: 260 DIFHVDLDDLMNKDLTNSQTKVDKDSLVEQIAETSSLLHISRQAK 304 >gi|309803473|ref|ZP_07697567.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|325913387|ref|ZP_08175754.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|308164482|gb|EFO66735.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|325477313|gb|EGC80458.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 441 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 18/165 (10%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + IK K ++ ++ N + + I + N + IS Sbjct: 109 ETMAQNIKYYLKQKGVSRHKLCDDLNIKYTTFCTWLQADAYPRIDKIEMMANYFNISKAN 168 Query: 90 IYDGEVIDRRYEDVTNKKRLDPY-----------------AIGARLKSIRKDKGMSQIEF 132 + + + + + + LK +RK M Q+E Sbjct: 169 LVEDKDAIKNDITTIYNQLHEKRQAKVYNYAREQLKEVVDMFSTNLKYLRKKYNMEQLEL 228 Query: 133 GKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LG ST+S +E+G P+IK +I + LD + D Sbjct: 229 AYKLGRKSGSTISEWEKGSYTPKIKVLAQIADIFHVDLDDLMNKD 273 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 61/188 (32%), Gaps = 17/188 (9%) Query: 27 QYWKDVG---TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 QY++++ T++ + + Q ++ + ++ +N + G ++ L + + Sbjct: 7 QYYENLNYFNTQLNHLMSVHGTKQVDLVNALDIPKTTINGYVKGTSLPNMGNLQKLADYF 66 Query: 84 EISFDWI-------------YDGEVIDRRYEDVTNKKRLDPYAIGAR-LKSIRKDKGMSQ 129 + ++ D R + LD A+ +K K KG+S+ Sbjct: 67 NTLKSDLDLRFKKDADKHLPVYNQLTDIRKHKMIKMSNLDNKETMAQNIKYYLKQKGVSR 126 Query: 130 IEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKG 189 + L + +T + Q P I + + + I Sbjct: 127 HKLCDDLNIKYTTFCTWLQADAYPRIDKIEMMANYFNISKANLVEDKDAIKNDITTIYNQ 186 Query: 190 NQSSKKSK 197 +++K Sbjct: 187 LHEKRQAK 194 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 43/105 (40%), Gaps = 1/105 (0%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLR 80 ++++ T +K +RK N Q E+A + S ++ +E G + I+ + Sbjct: 200 REQLKEVVDMFSTNLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYTPKIKVLAQIA 259 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + + D + + ++ + + + + + L R+ K Sbjct: 260 DIFHVDLDDLMNKDLTNSQTKVDKDSLVEQIAETSSLLHISRQAK 304 >gi|322390694|ref|ZP_08064207.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142600|gb|EFX38065.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 151 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 35/79 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++++RK+ TQ +++ + + + +ENG ++ + L ++ + D++ Sbjct: 8 FGDRLRELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPNLEAVVKLAKLFDTTTDYLL 67 Query: 92 DGEVIDRRYEDVTNKKRLD 110 + R+D Sbjct: 68 GKTIYSTLDVVPPPITRID 86 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + + G RL+ +RK K ++Q++ +++ + T S +E G P ++ K+ ++ Sbjct: 4 NNNSFGDRLRELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPNLEAVVKLAKLFDTTT 63 Query: 170 DWIY 173 D++ Sbjct: 64 DYLL 67 >gi|257875583|ref|ZP_05655236.1| predicted protein [Enterococcus casseliflavus EC20] gi|257809749|gb|EEV38569.1| predicted protein [Enterococcus casseliflavus EC20] Length = 293 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 36/90 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + ++K+ R +N TQKE+A + A++ +E G I + L + + Sbjct: 2 HESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVE 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + YE + + L + + Sbjct: 62 ELLKEKKETYYYEYKSERTVLRLPLMHILI 91 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 33/78 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ +LK R ++Q E L + + +S +E+G +P+I+ ++ + ++ Sbjct: 2 HESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVE 61 Query: 171 WIYFGDEVIVPKSIKRAK 188 + + K + Sbjct: 62 ELLKEKKETYYYEYKSER 79 >gi|257865956|ref|ZP_05645609.1| predicted protein [Enterococcus casseliflavus EC30] gi|257872289|ref|ZP_05651942.1| predicted protein [Enterococcus casseliflavus EC10] gi|257799890|gb|EEV28942.1| predicted protein [Enterococcus casseliflavus EC30] gi|257806453|gb|EEV35275.1| predicted protein [Enterococcus casseliflavus EC10] Length = 293 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 36/90 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + ++K+ R +N TQKE+A + A++ +E G I + L + + Sbjct: 2 HESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVE 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + YE + + L + + Sbjct: 62 ELLKEKKETYYYEYKSERTVLRLPLMHILI 91 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 33/78 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ +LK R ++Q E L + + +S +E+G +P+I+ ++ + ++ Sbjct: 2 HESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVE 61 Query: 171 WIYFGDEVIVPKSIKRAK 188 + + K + Sbjct: 62 ELLKEKKETYYYEYKSER 79 >gi|42518326|ref|NP_964256.1| hypothetical protein LJ0240 [Lactobacillus johnsonii NCC 533] gi|41582610|gb|AAS08222.1| hypothetical protein LJ_0240 [Lactobacillus johnsonii NCC 533] Length = 341 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 R +G +I ++RK NN +Q+ +A N AV+ +E+ I + L + Sbjct: 11 NERTIHMRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSLSELF 70 Query: 84 EISFDWIYDGEVIDRRYED 102 ++ D++ + Sbjct: 71 GVTTDYLLKSGAPSFEIKT 89 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 33/70 (47%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N +R +G ++ +RK +SQ + + + +S +E ++IP+I+ + ++ Sbjct: 10 NNERTIHMRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSLSEL 69 Query: 165 TKKHLDWIYF 174 D++ Sbjct: 70 FGVTTDYLLK 79 >gi|304409163|ref|ZP_07390784.1| putative phage repressor [Shewanella baltica OS183] gi|307303166|ref|ZP_07582921.1| putative phage repressor [Shewanella baltica BA175] gi|304352984|gb|EFM17381.1| putative phage repressor [Shewanella baltica OS183] gi|306913526|gb|EFN43948.1| putative phage repressor [Shewanella baltica BA175] Length = 233 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G R K+ RK N TQ +++ ++ +E+G S L + S D Sbjct: 1 MKTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPD 60 Query: 89 WIYDGEVIDRRYED 102 W+ G+ + + + Sbjct: 61 WLMFGDSKNTKKPE 74 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K RK ++Q++ K +G+ + T+S +E G T P+ + K+ Q + DW+ FGD Sbjct: 9 KERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDWLMFGDSK 68 Query: 179 IVPKSIKRAK 188 K A+ Sbjct: 69 NTKKPESNAE 78 >gi|251778650|ref|ZP_04821570.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082965|gb|EES48855.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 96 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK TQ ++A N S+VN +EN S+ + + + + +S D++ Sbjct: 2 LGDRIKSLRKEQGITQDQLAEYINVSRSSVNGYENDGVEPSLSVLVKISDRFNVSLDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + + Sbjct: 62 ERTEEKHNINLLDKDTKCFLLKVHE 86 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+KS+RK++G++Q + + + + S+++ YE P + KI LD++ Sbjct: 1 MLGDRIKSLRKEQGITQDQLAEYINVSRSSVNGYENDGVEPSLSVLVKISDRFNVSLDYL 60 Query: 173 YFGDEV 178 E Sbjct: 61 LERTEE 66 >gi|153931878|ref|YP_001384723.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935604|ref|YP_001388244.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|170757150|ref|YP_001782087.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|152927922|gb|ABS33422.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931518|gb|ABS37017.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|169122362|gb|ACA46198.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 82 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+ + TQ ++A SAV +ENG+ I + + + + IS D++ Sbjct: 5 DRLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDYLLCR 64 Query: 94 EVIDRRYED 102 + Sbjct: 65 TNKMEPFYK 73 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R+D+ ++Q + +L + S ++NYE G P+I KI LD+ Sbjct: 1 MVFKDRLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDY 60 Query: 172 IYFGDEVIVP 181 + + P Sbjct: 61 LLCRTNKMEP 70 >gi|147677060|ref|YP_001211275.1| hypothetical protein PTH_0725 [Pelotomaculum thermopropionicum SI] gi|146273157|dbj|BAF58906.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 355 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ R+A + +E+A A++ +E G+ S L L ++ ++ + Sbjct: 2 VGERLRLARRAAGLSLRELANRVGVSPQAISKYERGLDIPSSGVLLRLAEALGVNVEYFF 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 ++ L L I+ Sbjct: 62 RTRRVNLSVPAYRKNSALRRKQEQTVLAQIQGWLERYLEIEA 103 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RL+ R+ G+S E +G+ +S YE+G IP ++ + ++++ Sbjct: 1 MVGERLRLARRAAGLSLRELANRVGVSPQAISKYERGLDIPSSGVLLRLAEALGVNVEYF 60 Query: 173 Y 173 + Sbjct: 61 F 61 >gi|218902221|ref|YP_002450055.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820] gi|218539083|gb|ACK91481.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820] Length = 149 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|238063042|ref|ZP_04607751.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884853|gb|EEP73681.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 199 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 32/85 (37%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P I +VG R+K +R T +A +S ++ E G S+ L + Sbjct: 6 PAIAAALAEVGPRLKRLRTQRGVTLTALAEATGISKSTLSRLEGGQRRPSLELLLPIAQA 65 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKK 107 +++ D + + + ++ Sbjct: 66 HQVPLDELVGAPEVGDPRIRLVPRR 90 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R +G++ + G+ STLS E G+ P ++ I Q + LD + E Sbjct: 19 LKRLRTQRGVTLTALAEATGISKSTLSRLEGGQRRPSLELLLPIAQAHQVPLDELVGAPE 78 Query: 178 VIVPK 182 V P+ Sbjct: 79 VGDPR 83 >gi|300362045|ref|ZP_07058222.1| bacteriophage transcriptional regulator [Lactobacillus gasseri JV-V03] gi|300354664|gb|EFJ70535.1| bacteriophage transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 115 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RIKD+R + + TQKE+A N + ++ +E G SI L + + +S D++ Sbjct: 2 NIAQRIKDLRLSKHLTQKELAQLLNVKPTTISGWELGRNEPSIDTLKDLAHIFNVSVDYM 61 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+K +R K ++Q E +LL + +T+S +E GR P I + + + +D+ Sbjct: 1 MNIAQRIKDLRLSKHLTQKELAQLLNVKPTTISGWELGRNEPSIDTLKDLAHIFNVSVDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 GD K K + Sbjct: 61 -MAGDTENQNKDKKSIDLEKD 80 >gi|229083904|ref|ZP_04216210.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44] gi|228699402|gb|EEL52081.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44] Length = 262 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N A++ +ENG L + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTSRQAISKWENGQGFPETEKLLMIGNIFEVSVDYLL 62 Query: 92 DGEVIDRRYEDV 103 + Sbjct: 63 KDTAKQSNENEP 74 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G +L +RK+KG+SQ + L +S +E G+ PE + I + + +D+ Sbjct: 1 MAFGEKLFKLRKEKGLSQEALAEKLNTSRQAISKWENGQGFPETEKLLMIGNIFEVSVDY 60 Query: 172 IYFG 175 + Sbjct: 61 LLKD 64 >gi|223985675|ref|ZP_03635723.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] gi|223962366|gb|EEF66830.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] Length = 283 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I+++R TQKE+ + + A++ +E G+ I L + +S I Sbjct: 20 GQLIRELRLKAGWTQKELGMKIGISDKAISKWERGLSFPDITLLPRLAEVFHVSVGEIIS 79 Query: 93 GEVIDRRYEDVTNKKRL 109 G+ + + + Sbjct: 80 GQQLSEPALNPEQLDDV 96 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + L G ++ +R G +Q E G +G+ + +S +E+G + P+I ++ +V Sbjct: 11 MQNLTEERTGQLIRELRLKAGWTQKELGMKIGISDKAISKWERGLSFPDITLLPRLAEVF 70 Query: 166 KKHLDWIYFGDEVIVP 181 + I G ++ P Sbjct: 71 HVSVGEIISGQQLSEP 86 >gi|229140248|ref|ZP_04268805.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] gi|228643181|gb|EEK99455.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] Length = 277 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 DGEVIDRRYEDV 103 ++ Sbjct: 78 KENAEQSNEKEN 89 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 3/104 (2%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLVKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I V + LD++ + +S ++ G SK+ + Sbjct: 61 KLIMIGNVFEVSLDYLLKEN---AEQSNEKENGYYVSKEMAEGY 101 >gi|160875134|ref|YP_001554450.1| putative phage repressor [Shewanella baltica OS195] gi|160860656|gb|ABX49190.1| putative phage repressor [Shewanella baltica OS195] gi|315267325|gb|ADT94178.1| putative phage repressor [Shewanella baltica OS678] Length = 233 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G R K+ RK N TQ +++ ++ +E+G S L + S D Sbjct: 1 MKTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPD 60 Query: 89 WIYDGEVIDRRYED 102 W+ G+ + + + Sbjct: 61 WLMFGDSKNTKKPE 74 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K RK ++Q++ K +G+ + T+S +E G T P+ + K+ Q + DW+ FGD Sbjct: 9 KERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDWLMFGDSK 68 Query: 179 IVPKSIKRAK 188 K A+ Sbjct: 69 NTKKPESNAE 78 >gi|125972885|ref|YP_001036795.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256006006|ref|ZP_05430945.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417085|ref|ZP_06248105.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713110|gb|ABN51602.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] gi|255990029|gb|EEU00172.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408487|gb|EFB38745.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940876|gb|ADU74910.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 231 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 11/171 (6%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R+ +QK++A AV +E L + +++S D++ Sbjct: 7 LKQLREEKRLSQKDIADYLGITRQAVASYELAKREPDYEVLKKLADYFDVSIDYLLGRTN 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIP 153 + K +D K + + LG + L Y +G +P Sbjct: 67 CRDATAAII-GKNIDLIRGNLTYKELS-------EDISAKLGALIFPEMLELYARGERMP 118 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR-AKGNQSSKKSKKDKKSS 203 + + + + + + Y + + K + S +K ++ + + Sbjct: 119 FVGTIKILAKYAQVRDSFFYTHNTPETYEREKELYRLEMSQQKMAEEIEET 169 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 6/94 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A A LK +R++K +SQ + LG+ +++YE + P+ + +K+ +D+ Sbjct: 1 MAFAAMLKQLREEKRLSQKDIADYLGITRQAVASYELAKREPDYEVLKKLADYFDVSIDY 60 Query: 172 IYFGDE------VIVPKSIKRAKGNQSSKKSKKD 199 + I+ K+I +GN + K+ +D Sbjct: 61 LLGRTNCRDATAAIIGKNIDLIRGNLTYKELSED 94 >gi|332363209|gb|EGJ40994.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 205 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + + ++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGIEPVVQKEEEQSIKH 79 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIEPVVQKEEEQS 76 >gi|256848871|ref|ZP_05554305.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|293380471|ref|ZP_06626538.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312977837|ref|ZP_07789583.1| putative toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|256714410|gb|EEU29397.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|290922978|gb|EFD99913.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310895144|gb|EFQ44212.1| putative toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 199 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 2/142 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI--Y 91 +K I TQ+++A+ ++N + G + + + ++ D + Sbjct: 15 ANLKKILYNQKLTQRDLAMLTGISIPSINRYYLGNGAIPQNNLVKIAKALHVAPDELDPS 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 D + D LK + + +S E L + T+ + G Sbjct: 75 YQPTKDFLSQLAEKSDNPDLKFRTDYLKQLIQTSNLSVQEVASRLNIKPITVYKWLAGVN 134 Query: 152 IPEIKPARKIKQVTKKHLDWIY 173 P + K+ + + Sbjct: 135 TPSKENTAKLADLFNVSASSLV 156 Score = 47.6 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 26/70 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K + + +N + +E+A N V + G+ + S L + + +S + + Sbjct: 101 LKQLIQTSNLSVQEVASRLNIKPITVYKWLAGVNTPSKENTAKLADLFNVSASSLVNTSQ 160 Query: 96 IDRRYEDVTN 105 T Sbjct: 161 EVELTPQQTK 170 >gi|47567915|ref|ZP_00238622.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47555393|gb|EAL13737.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 262 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIK 185 + +++ Sbjct: 61 LLKETAEKSNENVD 74 >gi|228909441|ref|ZP_04073266.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200] gi|228850218|gb|EEM95047.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200] Length = 277 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y V K G +L +RK+KG+SQ + L +S +E G+ PE + Sbjct: 1 MFTYNLVKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I V + LD++ +S ++ G SK+ + Sbjct: 61 KLIMIGNVFEVSLDYLLK---ETAEQSNEKENGYYVSKEMAEGY 101 >gi|229010434|ref|ZP_04167638.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048] gi|228750854|gb|EEM00676.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048] Length = 149 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|229131934|ref|ZP_04260799.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196] gi|228651525|gb|EEL07495.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196] Length = 149 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|319936789|ref|ZP_08011201.1| hypothetical protein HMPREF9488_02035 [Coprobacillus sp. 29_1] gi|319808057|gb|EFW04629.1| hypothetical protein HMPREF9488_02035 [Coprobacillus sp. 29_1] Length = 366 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 39/103 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I R+ N TQ ++A +S+V+ +EN I L + IS D + Sbjct: 5 NLGKNIVYYRRKNGLTQDQLAEYIGVSKSSVSKWENNFTFPDIILLPQLAALFNISVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + + L +K+ ++ + + + + Sbjct: 65 MGYSPQLSKERIKSLYNELALDMAKDPIKTYQRCQQLIKQYYS 107 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 41/94 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G + R+ G++Q + + +G+ S++S +E T P+I ++ + Sbjct: 1 MNELNLGKNIVYYRRKNGLTQDQLAEYIGVSKSSVSKWENNFTFPDIILLPQLAALFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 +D + + + IK + +K K+ Sbjct: 61 VDELMGYSPQLSKERIKSLYNELALDMAKDPIKT 94 >gi|229028813|ref|ZP_04184915.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271] gi|228732500|gb|EEL83380.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271] Length = 149 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MMFSERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|261207860|ref|ZP_05922545.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566605|ref|ZP_06447025.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|260078243|gb|EEW65949.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161595|gb|EFD09475.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 203 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RK +Q+E+A AV+ +E+ + + + + + + ++ D+I Sbjct: 2 NMSDRIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDYI 61 Query: 91 YDG 93 G Sbjct: 62 LKG 64 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK KG+SQ E +G+ +S +E ++ P+++ + D+ Sbjct: 1 MNMSDRIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 I G E + K K + Sbjct: 61 ILKGIEPVNDKEQKSKE 77 >gi|312109712|ref|YP_003988028.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|311214813|gb|ADP73417.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 148 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R+ N +QK++A ++ +E+G + + Y ++ D+I Sbjct: 4 LGKRLKYLREKFNYSQKKVAEAIGISNVQLSRYESGDRNPDPELIAAFADFYGVTTDYIL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + Y TN +D L ++ K + K G+ + E+ ++ Sbjct: 64 GRTDDPQGYAPETN---IDNIKDTKELNTLIKINELI-----KKYGIEQMGFFDIEKWKS 115 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RLK +R+ SQ + + +G+ N LS YE G P+ + D Sbjct: 1 MNILGKRLKYLREKFNYSQKKVAEAIGISNVQLSRYESGDRNPDPELIAAFADFYGVTTD 60 Query: 171 WIY 173 +I Sbjct: 61 YIL 63 >gi|228966529|ref|ZP_04127582.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228793251|gb|EEM40801.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 277 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALADKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 92 DGEVIDRRYEDV 103 Sbjct: 78 KETAEQSNENME 89 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y K G +L +RK+KG+SQ L +S +E G+ PE + Sbjct: 1 MFTYNLGKKTKGDTHMGFGEKLFKLRKEKGLSQEALADKLNTTRQAVSKWENGQGFPETE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ ++++ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNENME 89 >gi|229068689|ref|ZP_04201987.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185] gi|228714436|gb|EEL66313.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185] Length = 149 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|225019957|ref|ZP_03709149.1| hypothetical protein CLOSTMETH_03916 [Clostridium methylpentosum DSM 5476] gi|224947321|gb|EEG28530.1| hypothetical protein CLOSTMETH_03916 [Clostridium methylpentosum DSM 5476] Length = 125 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 48/107 (44%), Gaps = 1/107 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+KD+R + Q+++A N +S+++ +E G+ + + L + +S D++ Sbjct: 3 ISQRLKDLRSDADLNQQDVADAVNVTQSSISNYELGVNLPDLDVVIKLAKFFNVSSDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + + D+ + L + K +R K + + L+ + Sbjct: 63 GITDVKTSWSDMKDHIILPSGKVPIT-KFLRDVKSLDTNDRESLIQV 108 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I RLK +R D ++Q + + + S++SNYE G +P++ K+ + D+ Sbjct: 1 MIISQRLKDLRSDADLNQQDVADAVNVTQSSISNYELGVNLPDLDVVIKLAKFFNVSSDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|239630947|ref|ZP_04673978.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065269|ref|YP_003787292.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|239527230|gb|EEQ66231.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437676|gb|ADK17442.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 202 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 38/80 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L IR M+Q + L + T+SN+E R +P+++ +I ++ + LD Sbjct: 1 MNFSKQLHQIRMAHQMTQANLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D + K I +K ++ Sbjct: 61 LILDDPKLNEKLIHDSKISR 80 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 33/97 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ IR A+ TQ +A + V+ +EN + + +E+S D + Sbjct: 2 NFSKQLHQIRMAHQMTQANLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 + +K + ++ GM Sbjct: 62 ILDDPKLNEKLIHDSKISRHQMIMAVMTTAVAMMSGM 98 >gi|258510478|ref|YP_003183912.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477204|gb|ACV57523.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 163 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 7/106 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 G R+ +R++ +Q +A + +E G I L + +++S D Sbjct: 2 MMTFGERLAQLRRSKGLSQYALAEQLKMTRGQIANYEQGTREPDIETLKKLADFFDVSID 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 ++ G+ + +TN + L+++ + Q E Sbjct: 62 FLVLGKPNVSDFNGLTN-------EVKRTLEALSQMSVEKQQEVAD 100 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RL +R+ KG+SQ + L M ++NYEQG P+I+ +K+ +D Sbjct: 2 MMTFGERLAQLRRSKGLSQYALAEQLKMTRGQIANYEQGTREPDIETLKKLADFFDVSID 61 Query: 171 WIYFGDEVIVP 181 ++ G + Sbjct: 62 FLVLGKPNVSD 72 >gi|160878226|ref|YP_001557194.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426892|gb|ABX40455.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 273 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 36/83 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ ++R+ +Q+++A + +V+ +E+ + + L +E+S D++ Sbjct: 5 DKLIELRRERGLSQEQLADQLDVSRQSVSKWESDQTMPELSKLITLSEIFEVSLDYLMRD 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGA 116 ++DR +D I Sbjct: 65 YIMDRSGTREKKDNTVDDKDIPN 87 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L +R+++G+SQ + L + ++S +E +T+PE+ + ++ + LD++ D Sbjct: 7 LIELRRERGLSQEQLADQLDVSRQSVSKWESDQTMPELSKLITLSEIFEVSLDYLMR-DY 65 Query: 178 VIVPKSIKRAKGNQSSKK 195 ++ + K N K Sbjct: 66 IMDRSGTREKKDNTVDDK 83 >gi|167749537|ref|ZP_02421664.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702] gi|167657461|gb|EDS01591.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702] Length = 380 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 33/90 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K R TQ+++A AV+ +ENG I + + +EI+ D + Sbjct: 15 KLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGSTYPDITLLPTIASYFEITLDEL 74 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 E + +L+ + Sbjct: 75 MGMENWRSEEQLKELLGQLEENGSKGLIYE 104 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 N +G LK R + ++Q + +LG+ +S +E G T P+I Sbjct: 2 NSTEENTMLNLGLKLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGSTYPDITLLP 61 Query: 160 KIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 I + LD + + + +K G SK Sbjct: 62 TIASYFEITLDELMGMENWRSEEQLKELLGQLEENGSK 99 >gi|85707104|ref|ZP_01038192.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668390|gb|EAQ23263.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 207 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 4/94 (4%) Query: 10 SLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 L+ +E PE D+G R++ +RKA T ++ A A S ++ ENG Sbjct: 9 LLRVTRETGAETGPE----PLDLGVRVRGLRKARGWTLEQAAKQAGLARSTLSKIENGQM 64 Query: 70 STSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 S + L EIS ++ DR + Sbjct: 65 SPTYDALKKLAQGLEISVPQLFTPPSRDRINGRM 98 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ +RK +G + + K G+ STLS E G+ P +K+ Q + + ++ Sbjct: 31 VRGLRKARGWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKKLAQGLEISVPQLFT 87 >gi|116326508|ref|YP_794188.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116098007|gb|ABJ63157.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 204 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK +R +SQ + + L + T+SN+E R +P+I+ KI +V LD Sbjct: 1 MTFSKSLKELRLLHELSQTQLARKLNVSPKTISNWENERNLPDIELIIKISKVLDVTLDE 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G+ + K IK + Sbjct: 61 LITGNIQLENKLIKDS 76 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 33/94 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K++R + +Q ++A N ++ +EN I + + +++ D + G Sbjct: 5 KSLKELRLLHELSQTQLARKLNVSPKTISNWENERNLPDIELIIKISKVLDVTLDELITG 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 + + K + + GM Sbjct: 65 NIQLENKLIKDSHKVFRDNVMSIVVSLYSMLTGM 98 >gi|229157204|ref|ZP_04285284.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342] gi|228626268|gb|EEK83015.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342] Length = 262 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 DGEVIDRRYEDV 103 ++ Sbjct: 63 KENAEQSNEKEN 74 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + +S ++ G SK+ + Sbjct: 61 LLKEN---AEQSNEKENGYYVSKEMAEGY 86 >gi|225405526|ref|ZP_03760715.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme DSM 15981] gi|225042938|gb|EEG53184.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme DSM 15981] Length = 257 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 2/108 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+ ++ +RK +Q+++ V+ +E G + + + L + ++ Sbjct: 2 RRKQMTAFSEQLIKLRKQKGLSQEQLGAAVGVTRQTVSKWELGDTTPELGKLVQLSDYFQ 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 +S D + + V + KS R G+ + Sbjct: 62 LSIDELVGHAAENDGDRTVELNGAPAVWHYEY--KSKRTWFGIPLVHI 107 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +R A +L +RK KG+SQ + G +G+ T+S +E G T PE+ ++ Sbjct: 1 MRRKQMTAFSEQLIKLRKQKGLSQEQLGAAVGVTRQTVSKWELGDTTPELGKLVQLSDYF 60 Query: 166 KKHLDWIY 173 + +D + Sbjct: 61 QLSIDELV 68 >gi|217961038|ref|YP_002339606.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|222097090|ref|YP_002531147.1| helix-turn-helix domain protein [Bacillus cereus Q1] gi|217067952|gb|ACJ82202.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|221241148|gb|ACM13858.1| helix-turn-helix domain protein [Bacillus cereus Q1] Length = 262 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 DGEVIDRRYEDV 103 ++ Sbjct: 63 KENAEQSNEKEN 74 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + +S ++ G SK+ + Sbjct: 61 LLKEN---AEQSNEKENGYYVSKEMAEGY 86 >gi|70725248|ref|YP_252162.1| hypothetical protein SH0247 [Staphylococcus haemolyticus JCSC1435] gi|68445972|dbj|BAE03556.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 112 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +I+ RK NN TQ ++A + V+ +E G +++ + L ++IS D + Sbjct: 2 KLAEQIRKHRKENNLTQDQLATELHTTRQTVSKWEQGTIEPNVQMIVQLAQRFDISTDEL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G+ + + Sbjct: 62 LTGQTSHPYKREESQSYP 79 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +++ RK+ ++Q + L T+S +EQG P ++ ++ Q D Sbjct: 1 MKLAEQIRKHRKENNLTQDQLATELHTTRQTVSKWEQGTIEPNVQMIVQLAQRFDISTDE 60 Query: 172 IYFGDEVIVPKSIKR 186 + G K + Sbjct: 61 LLTGQTSHPYKREES 75 >gi|69248820|ref|ZP_00604806.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257894941|ref|ZP_05674594.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|294623392|ref|ZP_06702249.1| transcriptional regulator [Enterococcus faecium U0317] gi|68194345|gb|EAN08856.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257831320|gb|EEV57927.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|281336179|gb|ADA62728.1| hypothetical membrane protein [Enterococcus faecium] gi|291597192|gb|EFF28386.1| transcriptional regulator [Enterococcus faecium U0317] Length = 153 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 37/90 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +D+G++++++R TQ+ +A N ++ +EN + I + Y + + Sbjct: 1 MEDLGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNIN 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 I + + + + ++ + L Sbjct: 61 SILNEDNLKNKQNNLLVLTAIIFNIFVTIL 90 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R KG +Q + + T+S +E +T P+I+ +KI + +++ I D Sbjct: 8 LRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNINSILNEDN 67 Query: 178 VIVPKS 183 + ++ Sbjct: 68 LKNKQN 73 >gi|319938757|ref|ZP_08013121.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811807|gb|EFW08073.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 135 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K+ R+ + TQ+ +A N ++ +E I Y L L + Y++S D + Sbjct: 2 EIGRKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G+ ++ + + Sbjct: 62 LKGDERMIQHLENSTN 77 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 41/84 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R+ G++Q + L + T+SN+E + P+I ++ + + LD Sbjct: 1 MEIGRKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + GDE ++ +S++K Sbjct: 61 LLKGDERMIQHLENSTNVVKSNQK 84 >gi|228949735|ref|ZP_04111960.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809949|gb|EEM56345.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 142 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 37/89 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N TQK++A + + +E+ L + + IS D++ Sbjct: 2 IGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSISADYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 V D + +T K D +K Sbjct: 62 GRAVTDETKKQLTPKDEKDIAKRMEEIKK 90 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+RK + ++Q + + +G+ + YE P K+ D++ Sbjct: 6 IKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSISADYLLGRAV 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSS 203 K K + K ++ K Sbjct: 66 TDETKKQLTPKDEKDIAKRMEEIKKD 91 >gi|225388149|ref|ZP_03757873.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme DSM 15981] gi|225045810|gb|EEG56056.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme DSM 15981] Length = 179 Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ IRK +Q+++A + AV+ +E G + L L N IS D + Sbjct: 3 FAEHLRQIRKEKGLSQEDLAELLDVSRQAVSKWEQGAGYPEVETLLLLSNRLNISLDSLM 62 Query: 92 DGEVIDR 98 E+ Sbjct: 63 ATEIARE 69 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ IRK+KG+SQ + +LL + +S +EQG PE++ + LD Sbjct: 1 MSFAEHLRQIRKEKGLSQEDLAELLDVSRQAVSKWEQGAGYPEVETLLLLSNRLNISLDS 60 Query: 172 IYFGD 176 + + Sbjct: 61 LMATE 65 >gi|295399294|ref|ZP_06809276.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294978760|gb|EFG54356.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 113 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+K R+ +QKE+A + ++ +E+G L + YE+S D++ Sbjct: 2 DLGERLKLCREKKGLSQKEVAEKIGIKNNTLSNYESGERRPDYETLCKLADLYEVSLDYL 61 Query: 91 YDGEVIDRRYEDVT 104 G+ E+ Sbjct: 62 IKGQEHKEEKENKN 75 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 41/75 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G RLK R+ KG+SQ E + +G+ N+TLSNYE G P+ + K+ + + LD+ Sbjct: 1 MDLGERLKLCREKKGLSQKEVAEKIGIKNNTLSNYESGERRPDYETLCKLADLYEVSLDY 60 Query: 172 IYFGDEVIVPKSIKR 186 + G E K K Sbjct: 61 LIKGQEHKEEKENKN 75 >gi|282852578|ref|ZP_06261920.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556320|gb|EFB61940.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 334 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I D+RK NN +Q+ +A N AV+ +E+ I + L + ++ D++ Sbjct: 3 LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSKLFGVTTDYLL 62 Query: 92 D-GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 GE + N K P +K Sbjct: 63 KSGEPSFELKNEDINDKDKLPVLSDELVKKY 93 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +RK +SQ + + + +S +E ++IP+I+ + ++ D+ Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSKLFGVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + E +K N K Sbjct: 61 LLKSGEPSFE--LKNEDINDKDK 81 >gi|206976191|ref|ZP_03237100.1| helix-turn-helix domain protein [Bacillus cereus H3081.97] gi|206745645|gb|EDZ57043.1| helix-turn-helix domain protein [Bacillus cereus H3081.97] Length = 262 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 DGEVIDRRYEDV 103 ++ Sbjct: 63 KENAEQSNEKEN 74 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + +S ++ G SK+ + Sbjct: 61 LLKEN---AEQSNEKENGYYVSKEMAEGY 86 >gi|206968183|ref|ZP_03229139.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134] gi|229177566|ref|ZP_04304944.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W] gi|206737103|gb|EDZ54250.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134] gi|228605928|gb|EEK63371.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W] Length = 149 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|229056760|ref|ZP_04196162.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603] gi|228720554|gb|EEL72118.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|229114588|ref|ZP_04244002.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3] gi|228668653|gb|EEL24081.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|92114209|ref|YP_574137.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797299|gb|ABE59438.1| transcriptional regulator, XRE family with cupin sensor protein [Chromohalobacter salexigens DSM 3043] Length = 195 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R+K +RK + +Q+E+A A S ++L E S S+ + + +S Sbjct: 5 DVGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEF 64 Query: 91 YDGEVIDRRYE 101 + GE + + Sbjct: 65 FAGEETSPQEK 75 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 37/74 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +GARLK +RK + +SQ E K G+ NST+S EQ P + +KI Sbjct: 1 MSGFDVGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVS 60 Query: 169 LDWIYFGDEVIVPK 182 + + G+E + Sbjct: 61 ISEFFAGEETSPQE 74 >gi|163942112|ref|YP_001646996.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013578|ref|ZP_04170711.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] gi|163864309|gb|ABY45368.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228747738|gb|EEL97608.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] Length = 194 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 42/111 (37%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + ++G+ I++IR+ T ++ G + ++ EN S SI + Sbjct: 4 IVVYKKEHDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMI 63 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 N + ++ + + +K R++ + + G+ Sbjct: 64 ANFLNVPLPYLLLEQKDRLKIVKKEERKYSVYGKDEQRIEHVAEQGGLRLS 114 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 KK D IG+ ++ IR+ +G++ + + G+ +S E +T P I I Sbjct: 8 KKEHDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFL 67 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 L ++ + + K + Sbjct: 68 NVPLPYLLLEQKDRLKIVKKEER 90 >gi|325570037|ref|ZP_08145962.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] gi|325156865|gb|EGC69036.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] Length = 293 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 37/90 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + ++KD R +N TQKE+A + A++ +E G I + L + + Sbjct: 2 HETLSKKLKDYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVE 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + YE + ++ L + + Sbjct: 62 ELLKEKKETYYYEYKSERRVLRLPLMHILI 91 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +LK R ++Q E L + + +S +E+G +P+I+ ++ + ++ Sbjct: 2 HETLSKKLKDYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVE 61 Query: 171 WIYFGDEVIVPKSIKRAK 188 + + K + Sbjct: 62 ELLKEKKETYYYEYKSER 79 >gi|313677598|ref|YP_004055594.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944296|gb|ADR23486.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 256 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK +RK TQ+++A + +E G I+ L L + + +S D + Sbjct: 4 INNNIKYLRKEKGWTQQDLADELGVKRPQIGSYEEGRADPRIQTLLKLSDLFNVSVDDLL 63 Query: 92 DGEVIDRRYEDVTNKKRL 109 ++ K L Sbjct: 64 GKDLSSPMVVTKKPTKVL 81 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I +K +RK+KG +Q + LG+ + +YE+GR P I+ K+ + +D + Sbjct: 4 INNNIKYLRKEKGWTQQDLADELGVKRPQIGSYEEGRADPRIQTLLKLSDLFNVSVDDLL 63 Query: 174 FGDEVIVPKSIKRA 187 G ++ P + + Sbjct: 64 -GKDLSSPMVVTKK 76 >gi|259416828|ref|ZP_05740748.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259348267|gb|EEW60044.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 216 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 5/104 (4%) Query: 4 NPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 +PF +L + E +Q ++G R+K +R + T ++ A S + Sbjct: 9 SPFSSDVQAALLD-----DSEKQQIRLELGRRVKGLRSSAGMTLEQAAERTGLAVSTIYK 63 Query: 64 FENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 ENG S S L L Y + + + + +T + Sbjct: 64 IENGKVSPSFENLLRLARGYGVGLEKLIAEPEDEVSTTRLTVTR 107 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 ++K+ +G R+K +R GM+ + + G+ ST+ E G+ P + ++ Sbjct: 21 DDSEKQQIRLELGRRVKGLRSSAGMTLEQAAERTGLAVSTIYKIENGKVSPSFENLLRLA 80 Query: 163 QVTKKHLDWIYFGDEVIVPKS 183 + L+ + E V + Sbjct: 81 RGYGVGLEKLIAEPEDEVSTT 101 >gi|229165969|ref|ZP_04293734.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621] gi|228617522|gb|EEK74582.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|150388221|ref|YP_001318270.1| XRE family plasmid maintenance system antidote protein [Alkaliphilus metalliredigens QYMF] gi|150389695|ref|YP_001319744.1| XRE family plasmid maintenance system antidote protein [Alkaliphilus metalliredigens QYMF] gi|150392083|ref|YP_001322132.1| XRE family plasmid maintenance system antidote protein [Alkaliphilus metalliredigens QYMF] gi|149948083|gb|ABR46611.1| plasmid maintenance system antidote protein, XRE family [Alkaliphilus metalliredigens QYMF] gi|149949557|gb|ABR48085.1| plasmid maintenance system antidote protein, XRE family [Alkaliphilus metalliredigens QYMF] gi|149951945|gb|ABR50473.1| plasmid maintenance system antidote protein, XRE family [Alkaliphilus metalliredigens QYMF] Length = 254 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 23/175 (13%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ + ++ + ++A++ + NG + + L + ++S DW+ Sbjct: 8 VGKRIEKSLEVLGIKAVDVCRSSGISKNAMSNYINGNRVPNAEILVKLSDVLKVSIDWLL 67 Query: 92 DGE-----------------------VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 G+ + Y IG + +R+D M Sbjct: 68 TGKGKGPEKAANFIFQEPVIEQDLVAESEASYFHQVEDIVRYNIEIGKNITHVREDAKMD 127 Query: 129 QIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 + + + L +YE G+ + +I + ++ +EVI + Sbjct: 128 VEQLAAAINIKPQALKDYESGKKVIPSYVIHRICKELSVLPLFLLDPEEVIDKEY 182 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 2/115 (1%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +I +Y ++G I +R+ +++A N A+ +E+G + E Sbjct: 105 DIVRYNIEIGKNITHVREDAKMDVEQLAAAINIKPQALKDYESGKKVIPSYVIHRICKEL 164 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR--LKSIRKDKGMSQIEFGKLL 136 + ++ D E + + N + L R+ Q E ++ Sbjct: 165 SVLPLFLLDPEEVIDKEYKSENADFGHSLTQFEQDTLHFFRELSRSDQEEIAHMI 219 >gi|297162496|gb|ADI12208.1| hypothetical protein SBI_09090 [Streptomyces bingchenggensis BCW-1] Length = 199 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+A T +++ S ++ E+G ++ L L Y++ D + Sbjct: 13 VGPRLRSLRQARGATLSQLSETTGISVSTLSRLESGQRKPTLELLLPLAKAYQVPLDELV 72 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY---- 173 L+S+R+ +G + + + G+ STLS E G+ P ++ + + + LD + Sbjct: 17 LRSLRQARGATLSQLSETTGISVSTLSRLESGQRKPTLELLLPLAKAYQVPLDELVGAPA 76 Query: 174 FGDEVIVPKSIKR 186 GD + P+ R Sbjct: 77 TGDPRVHPRPFTR 89 >gi|229120644|ref|ZP_04249888.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201] gi|301052670|ref|YP_003790881.1| putative transcriptional regulator [Bacillus anthracis CI] gi|228662817|gb|EEL18413.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201] gi|300374839|gb|ADK03743.1| possible transcriptional regulator; possible DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|227892270|ref|ZP_04010075.1| XRE family transcriptional regulator [Lactobacillus salivarius ATCC 11741] gi|227865911|gb|EEJ73332.1| XRE family transcriptional regulator [Lactobacillus salivarius ATCC 11741] Length = 220 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 34/90 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G I RK N TQ +A AV+ +ENG L L +IS + Sbjct: 20 QEKIGKFIAKCRKEQNFTQANLAEKLGITNQAVSKWENGKSMPDASLMLELCQLLKISVN 79 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +GE I + ++ L + Sbjct: 80 ELLNGEKIIMKDYKKIAEQNLIELEKQKEM 109 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 49/100 (49%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 + ++ IG + RK++ +Q + LG+ N +S +E G+++P+ Sbjct: 9 DNNFERGALMEQEKIGKFIAKCRKEQNFTQANLAEKLGITNQAVSKWENGKSMPDASLML 68 Query: 160 KIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 ++ Q+ K ++ + G+++I+ K A+ N + +K+ Sbjct: 69 ELCQLLKISVNELLNGEKIIMKDYKKIAEQNLIELEKQKE 108 >gi|225410097|ref|ZP_03761286.1| hypothetical protein CLOSTASPAR_05318 [Clostridium asparagiforme DSM 15981] gi|225042384|gb|EEG52630.1| hypothetical protein CLOSTASPAR_05318 [Clostridium asparagiforme DSM 15981] Length = 228 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +R TQ+++A A++ +E+G I + L Y D I Sbjct: 3 INQNLRQLRLDCGMTQEQVAAKIGLTRQALSSYESGRTRPDIEMLMRLCEVYGTDLDAIL 62 Query: 92 DG 93 G Sbjct: 63 YG 64 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I L+ +R D GM+Q + +G+ LS+YE GRT P+I+ ++ +V LD Sbjct: 1 MSINQNLRQLRLDCGMTQEQVAAKIGLTRQALSSYESGRTRPDIEMLMRLCEVYGTDLDA 60 Query: 172 IYFGDEVIVPKSIKRAK 188 I +G + K+++R K Sbjct: 61 ILYGTSRTL-KAVRRMK 76 >gi|308181643|ref|YP_003925771.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047134|gb|ADN99677.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 223 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K IR+ TQ ++A + ++ +ENG I + + Y+ S D + G Sbjct: 5 DNLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVDQLLKG 64 Query: 94 EVIDRRYEDVTNKKR 108 ++ ++ + + Sbjct: 65 DLGMLKHYEAQSANN 79 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 39/84 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK IR+ K M+Q + L + T+S++E GR+ P+I +I +D Sbjct: 1 MNFLDNLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + GD ++ ++ N+ ++ Sbjct: 61 LLKGDLGMLKHYEAQSANNRRQQR 84 >gi|160932990|ref|ZP_02080379.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753] gi|156868064|gb|EDO61436.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753] Length = 222 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ +Q A +S V +E G + + + + + +S D++ E Sbjct: 20 RLKELRENAGLSQYGFAEKIGISQSTVGNWEAGSREPNFKTMERIADFFGVSVDYLLGRE 79 Query: 95 V 95 Sbjct: 80 T 80 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R++ G+SQ F + +G+ ST+ N+E G P K +I +D++ + Sbjct: 21 LKELRENAGLSQYGFAEKIGISQSTVGNWEAGSREPNFKTMERIADFFGVSVDYLLGRET 80 Query: 178 V 178 V Sbjct: 81 V 81 >gi|116628909|ref|YP_814081.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|311111276|ref|ZP_07712673.1| putative transcriptional regulator [Lactobacillus gasseri MV-22] gi|116094491|gb|ABJ59643.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|311066430|gb|EFQ46770.1| putative transcriptional regulator [Lactobacillus gasseri MV-22] Length = 334 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I D+RK NN +Q+ +A N AV+ +E+ I + L + ++ D++ Sbjct: 3 LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDYLL 62 Query: 92 D-GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 GE + N K P +K Sbjct: 63 KSGEPSFELKNEDINDKDKLPVLSDELVKKY 93 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +RK +SQ + + + +S +E ++IP+I+ + ++ D+ Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + E +K N K Sbjct: 61 LLKSGEPSFE--LKNEDINDKDK 81 >gi|325687047|gb|EGD29070.1| DNA-binding protein [Streptococcus sanguinis SK72] Length = 197 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 13/143 (9%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG +I+ RK N +Q ++A +++ +E G ++ L L +E+S D + Sbjct: 2 QVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDVQNLLLLSKVFEVSLDKL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI-------RKDKGMSQIEFGKLLG-----M 138 G++ + + N++ + G + + FG + + Sbjct: 62 VKGDLETMKQI-IHNQEFMHYQKDGEVFTILLIGSPIIMIPLILYLDWFGIAISCLIFAI 120 Query: 139 PNSTLSNYEQGRTIPEIKPARKI 161 E+ + ++ R+I Sbjct: 121 TMFYALRIEKFKKQHNLRTFRQI 143 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 44/83 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ RK+K +SQ + +++ + ++SN+E+G T P+++ + +V + LD Sbjct: 1 MQVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDVQNLLLLSKVFEVSLDK 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + I + K Sbjct: 61 LVKGDLETMKQIIHNQEFMHYQK 83 >gi|317132318|ref|YP_004091632.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315470297|gb|ADU26901.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 373 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 30/79 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +RK TQ+E+A + AV+ +E+G I L + + D + Sbjct: 5 QIGANIASLRKEKGVTQEELADYLGISKPAVSKWESGQSYPDILLLPRLAAYFNRTVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E + RL Sbjct: 65 LGYAAQMTVEEVKSLYIRL 83 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IGA + S+RK+KG++Q E LG+ +S +E G++ P+I ++ + Sbjct: 1 MQTIQIGANIASLRKEKGVTQEELADYLGISKPAVSKWESGQSYPDILLLPRLAAYFNRT 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDELL 65 >gi|81428935|ref|YP_395935.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610577|emb|CAI55628.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 287 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 50/157 (31%), Gaps = 21/157 (13%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R +Q+ +A N ++ +E + + L Y +S + Sbjct: 3 IGQRLKQFRLGAGYSQRTLADKLNVSRQVISKWETDKSVPDLNLLVGLAQLYNVSLTELL 62 Query: 92 DGEVI----------DRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQIEFGKLLGMPN 140 D E + + + ++ + A+G ++ R + Q L + Sbjct: 63 DVETVTKSGSLLTRLRQHWHLSETEETVPLSALGQLIQKPERYYVDLRQQFSETLTDVAV 122 Query: 141 ----STLSNYEQGRTIPEIKPA--RKIK----QVTKK 167 T+ + + P + +I K Sbjct: 123 IRDGQTMPTHWRQTRTPYLITLAPHQISLKQTDYLKV 159 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK R G SQ L + +S +E +++P++ + Q+ L Sbjct: 1 MLIGQRLKQFRLGAGYSQRTLADKLNVSRQVISKWETDKSVPDLNLLVGLAQLYNVSLTE 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|75764621|ref|ZP_00744064.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899709|ref|ZP_04063958.1| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL 4222] gi|74487893|gb|EAO51666.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228859941|gb|EEN04352.1| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL 4222] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + ++I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDELLRS 64 Query: 94 EVIDRRYEDVTNKK 107 + + +KK Sbjct: 65 DEELTQKVIEDSKK 78 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|317506907|ref|ZP_07964679.1| hypothetical protein HMPREF9336_01050 [Segniliparus rugosus ATCC BAA-974] gi|316254835|gb|EFV14133.1| hypothetical protein HMPREF9336_01050 [Segniliparus rugosus ATCC BAA-974] Length = 148 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 18/136 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R+ T +++A A + V +ENG + +I + + EI + Sbjct: 14 LKAAREERKITVQDLARCAGVTYTTVWTWENGKHAPNIDTLVKVAAYLEIPVAQLVS--- 70 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 L +R G++Q + K G+ + LS E+G T Sbjct: 71 ---------------IPEGTETLGDLRVLAGLTQPQLAKAAGITTTVLSKLERGETPIAD 115 Query: 156 KPARKIKQVTKKHLDW 171 A+ + + Sbjct: 116 TRAKALAPHLGVSANE 131 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK+ R+++ ++ + + G+ +T+ +E G+ P I K+ + + + Sbjct: 9 FDPEALKAAREERKITVQDLARCAGVTYTTVWTWENGKHAPNIDTLVKVAAYLEIPVAQL 68 Query: 173 YFGDE 177 E Sbjct: 69 VSIPE 73 >gi|10956667|ref|NP_066803.1| putative repressor protein [Rhodococcus equi] gi|31983897|ref|NP_858505.1| repressor protein [Rhodococcus equi] gi|197313525|ref|YP_002149570.1| putative helix turn helix protein [Rhodococcus equi] gi|197313592|ref|YP_002149636.1| putative helix turn helix protein [Rhodococcus equi] gi|10657914|gb|AAG21753.1| putative repressor protein [Rhodococcus equi] gi|10801105|dbj|BAB16659.1| Putative repressor protein (trbA) [Rhodococcus equi] gi|197092567|emb|CAQ30306.1| putative helix turn helix protein [Rhodococcus equi] gi|197092634|emb|CAQ30377.1| putative helix turn helix protein [Rhodococcus equi] gi|297718607|gb|ADI50222.1| putative helix-turn-helix protein [Rhodococcus equi] Length = 148 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 18/137 (13%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R ++ ++ + + + +E G + + + + D + Sbjct: 12 ARLKELRGEKGLSRSDLGRLSGVPYNTIRRWETGNSAPAPDLLARVAEVLGVDVDALAVI 71 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + L S R KG +Q E L M ST S E+G Sbjct: 72 QDAAVS------------------LASWRTKKGFTQEEVAAALDMSPSTYSRLERGERPV 113 Query: 154 EIKPARKIKQVTKKHLD 170 + + + Sbjct: 114 TNGDTATLASLFGIEPE 130 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ARLK +R +KG+S+ + G+L G+P +T+ +E G + P ++ +V +D + Sbjct: 9 FDPARLKELRGEKGLSRSDLGRLSGVPYNTIRRWETGNSAPAPDLLARVAEVLGVDVDAL 68 >gi|227553220|ref|ZP_03983269.1| transcriptional regulator [Enterococcus faecalis HH22] gi|307291409|ref|ZP_07571293.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0411] gi|312904166|ref|ZP_07763334.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0635] gi|227177586|gb|EEI58558.1| transcriptional regulator [Enterococcus faecalis HH22] gi|306497640|gb|EFM67173.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0411] gi|310632642|gb|EFQ15925.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0635] gi|315029956|gb|EFT41888.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4000] Length = 107 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 31/74 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 GTR+ ++RK TQ ++A + + +E G + I + + + +S D+++ Sbjct: 2 FGTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYLH 61 Query: 92 DGEVIDRRYEDVTN 105 E + Sbjct: 62 GRESFEDTSLSKKQ 75 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL +RK K ++Q + LG+ +T S+YEQGR P+I KI LD++ Sbjct: 1 MFGTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYL 60 Query: 173 YFGDEVIVPKSIKRAK 188 G E S+ + + Sbjct: 61 -HGRESFEDTSLSKKQ 75 >gi|257413729|ref|ZP_05591775.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] gi|257202528|gb|EEV00813.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] Length = 403 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 38/131 (29%), Gaps = 8/131 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK R Q E A AV+ +E G SI + ++S D + Sbjct: 28 MAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDTLI 87 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 GE D + +S R K + G +T+ E Sbjct: 88 -GENSDSEKMMIGIDGGGTKTEFVLFSESGRILKRIILD------GCNPNTVGMEEAMNI 140 Query: 152 -IPEIKPARKI 161 I KI Sbjct: 141 LQLGIDTLMKI 151 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + D + +K+ R +G++Q EF + LG+ +S +E G++ P I+ I ++ Sbjct: 21 EVFDIMTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILD 80 Query: 167 KHLDWIYFGDEVIVPKSI 184 +D + + I Sbjct: 81 VSIDTLIGENSDSEKMMI 98 >gi|315659344|ref|ZP_07912208.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] gi|315495769|gb|EFU84100.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] Length = 112 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK RK TQ ++A + V+ +E G + + + L ++I+ D + Sbjct: 2 KLAEQIKKYRKEQGLTQDQLAAELHTTRQTVSKWEQGSIEPNAQMIVNLAQMFDITTDEL 61 Query: 91 YDGEVIDRRYEDVTN 105 GE + +++ Sbjct: 62 LTGENMSNFTKELNE 76 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K RK++G++Q + L T+S +EQG P + + Q+ D Sbjct: 1 MKLAEQIKKYRKEQGLTQDQLAAELHTTRQTVSKWEQGSIEPNAQMIVNLAQMFDITTDE 60 Query: 172 IYFGD 176 + G+ Sbjct: 61 LLTGE 65 >gi|153000490|ref|YP_001366171.1| putative phage repressor [Shewanella baltica OS185] gi|151365108|gb|ABS08108.1| putative phage repressor [Shewanella baltica OS185] Length = 263 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G RI+ RK TQK +A S++ +E GM + + + L S +W Sbjct: 25 EMIGDRIRSRRKELKLTQKNVAETVKVTPSSITQWELGMSTPKGKNLINLSKALNCSPEW 84 Query: 90 IYDGEVIDRRYEDVTNKK 107 + G+ ++ Sbjct: 85 LLSGKEDNQARVSTVESN 102 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R++S RK+ ++Q + + + S+++ +E G + P+ K + + +W+ Sbjct: 26 MIGDRIRSRRKELKLTQKNVAETVKVTPSSITQWELGMSTPKGKNLINLSKALNCSPEWL 85 Query: 173 YFGDEV 178 G E Sbjct: 86 LSGKED 91 >gi|317055082|ref|YP_004103549.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447351|gb|ADU20915.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 165 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K +R +Q+++A +V+ +ENG I + L + Y I + Sbjct: 5 KIGAFLKQLRNEKGLSQEKLAEVFGVSSRSVSRWENGRTMPDISIIIELADYYGIDIREL 64 Query: 91 YDGEVIDRRYEDVTNK 106 +GE + Sbjct: 65 LNGERKSEDMNKDVKE 80 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IGA LK +R +KG+SQ + ++ G+ + ++S +E GRT+P+I ++ Sbjct: 1 MDQVKIGAFLKQLRNEKGLSQEKLAEVFGVSSRSVSRWENGRTMPDISIIIELADYYGID 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 IRELLNGE 68 >gi|229095638|ref|ZP_04226619.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29] gi|228687770|gb|EEL41667.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|332638098|ref|ZP_08416961.1| hypothetical protein WcibK1_05343 [Weissella cibaria KACC 11862] Length = 112 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ R+ TQ +A N ++ +E G I + + N + I+ D + Sbjct: 3 LGQRIKEEREKRQWTQDYLAETLNVSRQTISKWEVGSTYPDIDRLVQISNLFGITLDSLI 62 Query: 92 DGEV 95 G+ Sbjct: 63 KGDD 66 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+K R+ + +Q + L + T+S +E G T P+I +I + LD Sbjct: 1 MILGQRIKEEREKRQWTQDYLAETLNVSRQTISKWEVGSTYPDIDRLVQISNLFGITLDS 60 Query: 172 IYFGDEVIVPKSI 184 + GD+ + + Sbjct: 61 LIKGDDSLKKSIV 73 >gi|125718510|ref|YP_001035643.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498427|gb|ABN45093.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 197 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 15/144 (10%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG +I+ RK N +Q ++A +++ +E G I+ L L +E+S D + Sbjct: 2 QVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDKL 61 Query: 91 YDGEVIDRRY--------EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG----- 137 G++ + + IG+ + I + FG + Sbjct: 62 VKGDLETMKQIIHDQEFMRYQKDGAVFTILLIGSPI--IMIPLILYLDWFGIAISCLIFA 119 Query: 138 MPNSTLSNYEQGRTIPEIKPARKI 161 + E+ + ++ R+I Sbjct: 120 ITMFYALRIEKFKKQHNLRTFRQI 143 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 45/83 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ RK+K +SQ + +++ + ++SN+E+G T P+I+ + +V + LD Sbjct: 1 MQVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDK 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + I + + K Sbjct: 61 LVKGDLETMKQIIHDQEFMRYQK 83 >gi|78221357|ref|YP_383104.1| putative prophage repressor [Geobacter metallireducens GS-15] gi|78192612|gb|ABB30379.1| putative prophage repressor [Geobacter metallireducens GS-15] Length = 216 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 31/70 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK+IR TQKE A ++ ++ E + S + L N YEIS W+ Sbjct: 13 GRRIKEIRINKGLTQKEFADSLGIVQGFLSGIEREKKTPSDTLLIALCNLYEISPSWLAS 72 Query: 93 GEVIDRRYED 102 GE R Sbjct: 73 GEGEMYRTPR 82 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K IR +KG++Q EF LG+ LS E+ + P + + + W+ G Sbjct: 14 RRIKEIRINKGLTQKEFADSLGIVQGFLSGIEREKKTPSDTLLIALCNLYEISPSWLASG 73 Query: 176 DEVI 179 + + Sbjct: 74 EGEM 77 >gi|332360161|gb|EGJ37975.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 169 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 37/87 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D Sbjct: 1 MMKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIG 115 ++ E V ++ D Y Sbjct: 61 YLLLEESDKPEINPVLSEDEKDRYYKE 87 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D Sbjct: 1 MMKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 ++ E I + K+ KS Sbjct: 61 YLLL--EESDKPEINPVLSEDEKDRYYKEVKS 90 >gi|257880858|ref|ZP_05660511.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|260562694|ref|ZP_05833195.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|261209352|ref|ZP_05923730.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|257815086|gb|EEV43844.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|260072923|gb|EEW61277.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|260076680|gb|EEW64429.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] Length = 153 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 36/90 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +D+G++++++R TQ+ +A N ++ +EN + I + Y + + Sbjct: 1 MEDLGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNIN 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 I + + + ++ + L Sbjct: 61 SILNEDNSKNKKNNLLVLTAIIFNIFVTIL 90 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R KG +Q + + T+S +E +T P+I+ +KI + +++ I D Sbjct: 8 LRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNINSILNEDN 67 Query: 178 VIVPKS 183 K+ Sbjct: 68 SKNKKN 73 >gi|262283189|ref|ZP_06060956.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262261441|gb|EEY80140.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 135 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K+ R+ + TQ+ +A N ++ +E I Y L L + YE+S D + Sbjct: 2 EIGKKLKEARQLSGMTQESVAEELNVSRQTISNWETEKFYPDILYVLQLSDLYEVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G+ ++ + + Sbjct: 62 LKGDESMIQHLEESTD 77 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 42/84 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R+ GM+Q + L + T+SN+E + P+I ++ + + LD Sbjct: 1 MEIGKKLKEARQLSGMTQESVAEELNVSRQTISNWETEKFYPDILYVLQLSDLYEVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + GDE ++ + +S++K Sbjct: 61 LLKGDESMIQHLEESTDTVKSNRK 84 >gi|258540564|ref|YP_003175063.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|257152240|emb|CAR91212.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 215 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 35/86 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ ++ TQ ++ + ++ +ENG I + + + Y+IS D + Sbjct: 2 QFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + ++ + +K+ Sbjct: 62 LREDQDIVQHYETISKQAQRYQKYFQ 87 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ ++Q++ G L + T+S++E GR+ P+I I + + LD Sbjct: 1 MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ IV +K Q +K Sbjct: 61 LLREDQDIVQHYETISKQAQRYQK 84 >gi|160915619|ref|ZP_02077827.1| hypothetical protein EUBDOL_01626 [Eubacterium dolichum DSM 3991] gi|331082745|ref|ZP_08331868.1| hypothetical protein HMPREF0992_00792 [Lachnospiraceae bacterium 6_1_63FAA] gi|158432095|gb|EDP10384.1| hypothetical protein EUBDOL_01626 [Eubacterium dolichum DSM 3991] gi|330400364|gb|EGG80006.1| hypothetical protein HMPREF0992_00792 [Lachnospiraceae bacterium 6_1_63FAA] Length = 204 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +R N TQ+++A +A++ +E+G +I + + ++ D + Sbjct: 2 EFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + E Y+ + Sbjct: 62 LSGEELITLAETENRSNLKKIYSFIYGI 89 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +R K ++Q + + L + + +S +E G+ P I+ + I + +D Sbjct: 1 MEFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDE 60 Query: 172 IYFGDEVIV 180 + G+E+I Sbjct: 61 LLSGEELIT 69 >gi|227533383|ref|ZP_03963432.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188949|gb|EEI69016.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 202 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 40/80 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L IR M+Q+ + L + T+SN+E R +P+++ +I ++ + LD Sbjct: 1 MNFSKQLHQIRLAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D + K I+ +K ++ Sbjct: 61 LILDDPKLNEKLIQDSKISR 80 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 8/132 (6%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ IR A+ TQ +A + V+ +EN + + +E+S D + Sbjct: 2 NFSKQLHQIRLAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM--------SQIEFGKLLGMPNST 142 + +K + ++ GM +L+ Sbjct: 62 ILDDPKLNEKLIQDSKISRHQMIMAVMTTAVAMMSGMAATTLFGFFPQWLARLIWWSYVA 121 Query: 143 LSNYEQGRTIPE 154 + P+ Sbjct: 122 VLFLFSYMLSPK 133 >gi|171778435|ref|ZP_02919593.1| hypothetical protein STRINF_00444 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282836|gb|EDT48260.1| hypothetical protein STRINF_00444 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 183 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 33/75 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 I ++RK +Q + A + V+ +ENG + + + + + IS D + E Sbjct: 5 NISELRKQYQMSQDDFANIFHVSRQTVSNWENGKSYPDVEMLVKISDYFGISVDQLIKKE 64 Query: 95 VIDRRYEDVTNKKRL 109 I ++ +K+L Sbjct: 65 TIPSVAKNSDKQKKL 79 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 + +RK MSQ +F + + T+SN+E G++ P+++ KI +D + Sbjct: 3 KMNISELRKQYQMSQDDFANIFHVSRQTVSNWENGKSYPDVEMLVKISDYFGISVDQLIK 62 Query: 175 GDEVIVPKSIKRAKGNQS 192 + +P K + + Sbjct: 63 KE--TIPSVAKNSDKQKK 78 >gi|83940972|gb|ABC48877.1| hypothetical protein [Enterococcus faecium] Length = 203 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RK +Q+E+A AV+ +E+ + + + + + + ++ D+I Sbjct: 2 NMSDRIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDYI 61 Query: 91 YDG 93 G Sbjct: 62 LKG 64 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK KG+SQ E +G+ +S +E ++ P+++ + D+ Sbjct: 1 MNMSDRIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 I G E + K K + Sbjct: 61 ILKGIEPVNDKEQKSKE 77 >gi|291541151|emb|CBL14262.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 179 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + T +K++R+ ++ +QK+ A++ +E+G S SI + Y +S DW+ Sbjct: 14 NFATNLKELRQEHSLSQKDFGASIGISAMAISSYESGTKSPSIDTVCRIAETYHVSIDWL 73 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 I ++ D I L I D ++ FG LG+ LS + Sbjct: 74 CGTGDIKNHSLEIKTYT--DLIEILMLLDEIHIDIEKAERSFGSTLGLSPYYLSLTFNDK 131 Query: 151 T 151 T Sbjct: 132 T 132 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK +R++ +SQ +FG +G+ +S+YE G P I +I + +DW+ Sbjct: 18 NLKELRQEHSLSQKDFGASIGISAMAISSYESGTKSPSIDTVCRIAETYHVSIDWL 73 >gi|268611043|ref|ZP_06144770.1| transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 78 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G RIK +RK NN TQ ++A + S V +E G + + + +++S D++Y Sbjct: 10 GKRIKALRKKNNLTQCQLAELLHMSRSTVLKYETGRQIPPVDRICDIADIFDVSTDYLY 68 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+K++RK ++Q + +LL M ST+ YE GR IP + I + D++Y Sbjct: 9 CGKRIKALRKKNNLTQCQLAELLHMSRSTVLKYETGRQIPPVDRICDIADIFDVSTDYLY 68 Query: 174 FGDEVIVP 181 + +P Sbjct: 69 GVSDCSLP 76 >gi|153954565|ref|YP_001395330.1| hypothetical protein CKL_1947 [Clostridium kluyveri DSM 555] gi|219855059|ref|YP_002472181.1| hypothetical protein CKR_1716 [Clostridium kluyveri NBRC 12016] gi|146347423|gb|EDK33959.1| Phage-related protein [Clostridium kluyveri DSM 555] gi|219568783|dbj|BAH06767.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 261 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG +IK+IR++ N TQK++A + +EN SI + +++ + + Sbjct: 2 NVGAKIKEIRESKNLTQKQLAEKIGVTPVTITRYENNKREPSIETLNKIAKALDVTINDL 61 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 39/75 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GA++K IR+ K ++Q + + +G+ T++ YE + P I+ KI + ++ Sbjct: 1 MNVGAKIKEIRESKNLTQKQLAEKIGVTPVTITRYENNKREPSIETLNKIAKALDVTIND 60 Query: 172 IYFGDEVIVPKSIKR 186 + + + K +K+ Sbjct: 61 LAGEKDTVTKKVLKQ 75 >gi|327184359|gb|AEA32806.1| hypothetical protein LAB52_09520 [Lactobacillus amylovorus GRL 1118] Length = 94 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 39/88 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I +R NN +Q+E+A N +V+ +E+G + + L N +++S D++ Sbjct: 2 NLNQKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + + + Sbjct: 62 LKDIMKKKAIHQLRSITSIFHCHNLILI 89 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ +R D SQ E + L + ++S +E G++ P++ + + D+ Sbjct: 1 MNLNQKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + +++ K+I + + S Sbjct: 61 LL--KDIMKKKAIHQLRSITS 79 >gi|228919863|ref|ZP_04083219.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839764|gb|EEM85049.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|220932927|ref|YP_002509835.1| putative prophage repressor [Halothermothrix orenii H 168] gi|219994237|gb|ACL70840.1| putative prophage repressor [Halothermothrix orenii H 168] Length = 200 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 35/74 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G +++ +RK N T +E+ N S + ++E G + S+ L + + + +S D Sbjct: 1 MEKFGQKLRKLRKEKNLTLRELGNKLNLSFSLLAMYERGERTPSLDKLLLIADFFNVSTD 60 Query: 89 WIYDGEVIDRRYED 102 ++ D ++ Sbjct: 61 YLLDHSPLEDLNRK 74 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +L+ +RK+K ++ E G L + S L+ YE+G P + I D Sbjct: 1 MEKFGQKLRKLRKEKNLTLRELGNKLNLSFSLLAMYERGERTPSLDKLLLIADFFNVSTD 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|308067920|ref|YP_003869525.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857199|gb|ADM68987.1| Transcriptional regulator [Paenibacillus polymyxa E681] Length = 122 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 33/83 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G+RI ++R+ Q+E+A +A++ +E L + + ++ D++ Sbjct: 2 NYGSRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFEILTKLADIFGVTIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 D ++ +D Sbjct: 62 VGRTSHPAAILDSDVREFVDQLE 84 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G+R+ +R+ KG+ Q E + LG+ + LS+YE+ R P+ + K+ + +D+ Sbjct: 1 MNYGSRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFEILTKLADIFGVTIDY 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|228906769|ref|ZP_04070639.1| hypothetical protein bthur0013_9460 [Bacillus thuringiensis IBL 200] gi|228852885|gb|EEM97669.1| hypothetical protein bthur0013_9460 [Bacillus thuringiensis IBL 200] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + ++I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDELLRS 64 Query: 94 EVIDRRYEDVTNKK 107 + + +KK Sbjct: 65 DEELTQKVIEDSKK 78 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|227509610|ref|ZP_03939659.1| helix-turn-helix XRE-family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190972|gb|EEI71039.1| helix-turn-helix XRE-family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 125 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R ANN +Q ++A A++ +E G + + + L + IS D + Sbjct: 5 QFSKQLKKYRAANNLSQDDLAKKLFVSRQAISKWEQGDATPDLNNLVKLAEIFNISLDTL 64 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + D Sbjct: 65 VLGASETKSTVDQNQYTF 82 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +LK R +SQ + K L + +S +EQG P++ K+ ++ Sbjct: 1 MTMLQFSKQLKKYRAANNLSQDDLAKKLFVSRQAISKWEQGDATPDLNNLVKLAEIFNIS 60 Query: 169 LDWIYFG 175 LD + G Sbjct: 61 LDTLVLG 67 >gi|138896745|ref|YP_001127198.1| prophage LambdaBa04, DNA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|196249440|ref|ZP_03148138.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134268258|gb|ABO68453.1| Prophage LambdaBa04, DNA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|196211197|gb|EDY05958.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 137 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G +K +RK TQ+++A N S ++ +ENG I+ L + +S D Sbjct: 2 MKKLGEMLKRLRKQQRWTQEQLAEQLNVSRSQISKWENGSTLPDIQSLEKLCRLFNVSAD 61 Query: 89 WIYDGEVIDRRYEDVTNK 106 ++ EV R + Sbjct: 62 FLIGSEVQRREVLREVKR 79 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G LK +RK + +Q + + L + S +S +E G T+P+I+ K+ ++ D Sbjct: 2 MKKLGEMLKRLRKQQRWTQEQLAEQLNVSRSQISKWENGSTLPDIQSLEKLCRLFNVSAD 61 Query: 171 WIYFGDEVIVPKSIKRAK 188 ++ G EV + ++ K Sbjct: 62 FLI-GSEVQRREVLREVK 78 >gi|325833547|ref|ZP_08165996.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] gi|325485471|gb|EGC87940.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] Length = 140 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 6/103 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+ I+ RK TQ+++A V +E G + + A L ++S D + Sbjct: 2 IGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDALV 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI---GARL---KSIRKDKGMS 128 + K L ++ K R+ G+ Sbjct: 62 GYDPHGTMLPMPPRGKHLFGTVTVGERWQIVIPKQARELFGIE 104 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG+ ++S RK G++Q + + LG+ T++ +E G + P++ A + + LD + Sbjct: 1 MIGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDAL 60 Query: 173 YFGD 176 D Sbjct: 61 VGYD 64 >gi|317490283|ref|ZP_07948769.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] gi|316910573|gb|EFV32196.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] Length = 143 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 6/103 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+ I+ RK TQ+++A V +E G + + A L ++S D + Sbjct: 5 IGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDALV 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI---GARL---KSIRKDKGMS 128 + K L ++ K R+ G+ Sbjct: 65 GYDPHGTMLPMPPRGKHLFGTVTVGERWQIVIPKQARELFGIE 107 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++S RK G++Q + + LG+ T++ +E G + P++ A + + LD Sbjct: 3 NMIGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDA 62 Query: 172 IYFGD 176 + D Sbjct: 63 LVGYD 67 >gi|327490617|gb|EGF22398.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] gi|328945826|gb|EGG39977.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 205 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + + ++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLADQFGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGIEPVVQKEEEQSIKH 79 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 36/76 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ G+ +S +E +++P++ + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQFGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIEPVVQKEEEQS 76 >gi|291518454|emb|CBK73675.1| Predicted transcriptional regulators [Butyrivibrio fibrisolvens 16/4] Length = 196 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 13/176 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIKD+R +N Q E+A ++ +EN I+ L L N +EIS D + Sbjct: 2 ELGKRIKDLRSLHNWNQDELAEKMFVSRQTISNWENEKSYPDIQSILLLSNLFEISLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 G+V +++ +K ++ M G L+ + L Sbjct: 62 VKGDV-----------EQMQEIINDQDVKQMKFYGKMMLACIGILI-VTFGPLYLLIGMW 109 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIV-PKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ ++ K L+ I ++++ + + GN +KSK+ + P Sbjct: 110 SLIPEGILAMLELYFSKKLNIIEKENDLVTYKEIVTFMNGNSLDEKSKQQEIGKRP 165 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 37/80 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+K +R +Q E + + + T+SN+E ++ P+I+ + + + LD Sbjct: 1 MELGKRIKDLRSLHNWNQDELAEKMFVSRQTISNWENEKSYPDIQSILLLSNLFEISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + GD + + I Q Sbjct: 61 LVKGDVEQMQEIINDQDVKQ 80 >gi|45597387|ref|NP_996677.1| phage repressor [Lactococcus phage phiLC3] gi|21617869|gb|AAK07510.2|AF242738_1 phage repressor [Lactococcus phage phiLC3] Length = 286 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 37/69 (53%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 EI Q K VG++IKD RK+ +Q+E+A ++ ++ +E G+ S + L + Sbjct: 2 EIEQINKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVF 61 Query: 84 EISFDWIYD 92 +++ D + Sbjct: 62 DVAIDDFFP 70 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G+++K RK G+SQ E K +G+ +T+SNYE G P+ K+ +V +D Sbjct: 7 NKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAID 66 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + N SS S+ +K SS Sbjct: 67 DFF--------PQTDSTRMNVSSILSEINKISS 91 >gi|218233356|ref|YP_002365796.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264] gi|218161313|gb|ACK61305.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|228938260|ref|ZP_04100874.1| hypothetical protein bthur0008_9280 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971138|ref|ZP_04131770.1| hypothetical protein bthur0003_9200 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977747|ref|ZP_04138132.1| hypothetical protein bthur0002_9560 [Bacillus thuringiensis Bt407] gi|228781955|gb|EEM30148.1| hypothetical protein bthur0002_9560 [Bacillus thuringiensis Bt407] gi|228788564|gb|EEM36511.1| hypothetical protein bthur0003_9200 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821396|gb|EEM67407.1| hypothetical protein bthur0008_9280 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938767|gb|AEA14663.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DKE 67 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + D+ + K I+ +K Sbjct: 61 LLRSDKELTQKVIEDSK 77 >gi|29375989|ref|NP_815143.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29343451|gb|AAO81213.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 107 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 31/74 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 GTR+ ++RK TQ ++A + + +E G + I + + + +S D+++ Sbjct: 2 FGTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYLH 61 Query: 92 DGEVIDRRYEDVTN 105 E + Sbjct: 62 GRESFEDTSLSKKQ 75 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL +RK K ++Q + LG+ +T S+YEQGR P+I KI LD++ Sbjct: 1 MFGTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYL 60 Query: 173 YFGDEVIVPKSIKRAK 188 G E S+ + + Sbjct: 61 -HGRESFEDTSLSKKQ 75 >gi|319938593|ref|ZP_08012980.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319806229|gb|EFW02921.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 114 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 39/88 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RK+ +Q+E+A AV+ +E+ + + + + + + ++ D+I Sbjct: 2 NMADRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDYI 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G E R+ + +L Sbjct: 62 LKGIEPVADKEQKIKSLRVRYFIYHQQL 89 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK KG+SQ E +G+ +S +E ++ P+++ + D+ Sbjct: 1 MNMADRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDY 60 Query: 172 IYFGDEVIVPKSIK 185 I G E + K K Sbjct: 61 ILKGIEPVADKEQK 74 >gi|49479808|ref|YP_035283.1| DNA-binding protein transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331364|gb|AAT62010.1| possible transcriptional regulator; possible DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 149 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLSS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLSSDEELTQKVIEDSK 77 >gi|47565539|ref|ZP_00236580.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47557529|gb|EAL15856.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 137 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +K +R++ +Q ++A AV +EN I + L Y ++ D + Sbjct: 2 NLGELLKKLRESKGFSQGDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDEL 61 Query: 91 YDGEVI 96 G Sbjct: 62 IKGNQD 67 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MNLGELLKKLRESKGFSQGDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + G++ K A+ K Sbjct: 61 LIKGNQDFKKKIHSDAEDEDFEK 83 >gi|150016491|ref|YP_001308745.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902956|gb|ABR33789.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 123 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 2/93 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G +I+ +R+ N QKE+A A E+ ++ +ENG L N +S D Sbjct: 1 MKTIGEKIQILREERNLKQKELAELAGITEATLSRYENGKREPKGEIISKLANVLNVSTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ D V L +K + Sbjct: 61 YLLGR--NDIITSSVEPTGNLAEQVGLKLIKEL 91 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 38/73 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +++ +R+++ + Q E +L G+ +TLS YE G+ P+ + K+ V D Sbjct: 1 MKTIGEKIQILREERNLKQKELAELAGITEATLSRYENGKREPKGEIISKLANVLNVSTD 60 Query: 171 WIYFGDEVIVPKS 183 ++ +++I Sbjct: 61 YLLGRNDIITSSV 73 >gi|332971234|gb|EGK10197.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 108 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++RK TQ E+A + ++ +E+ + + + + +S D++ Sbjct: 3 FGQRLKELRKKRKITQAELAKVLGVDNTTISKWESNTYEPEMTAIKEIADFFNVSADYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPY 112 + ++E + DP Sbjct: 63 GRTNVPSQFETEAAHRTDDPM 83 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G RLK +RK + ++Q E K+LG+ N+T+S +E PE+ ++I D+ Sbjct: 1 MSFGQRLKELRKKRKITQAELAKVLGVDNTTISKWESNTYEPEMTAIKEIADFFNVSADY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|296138750|ref|YP_003645993.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026884|gb|ADG77654.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 191 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T VG R++ IR+ + T +A S ++ E G ++ L L Sbjct: 1 MTETTDPVLAQVGPRLRAIRQERDITLTAVAEATGISVSTLSRLEGGTRKPTLELLLPLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 Y + D + D + + D Sbjct: 61 RTYGLPLDELVDAPETGDPRVRLKPVRHGD 90 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L++IR+++ ++ + G+ STLS E G P ++ + + LD + E Sbjct: 16 LRAIRQERDITLTAVAEATGISVSTLSRLEGGTRKPTLELLLPLARTYGLPLDELVDAPE 75 Query: 178 VIVPKS 183 P+ Sbjct: 76 TGDPRV 81 >gi|241896164|ref|ZP_04783460.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] gi|241870583|gb|EER74334.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] Length = 140 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 46/113 (40%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ ++ +IK RK +Q+E A ++ +EN I + + + N Y++ Sbjct: 7 KEKIMELSNKIKKRRKELGISQEEAAKKLYISRQTLSNWENDKTLPDIDHLIDISNLYDL 66 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 S D + + ++ + K +IG + I S F ++G+ Sbjct: 67 SLDELIKEDTSIKKKIIIKTKTDNLLISIGMFITCIGFFLPDSLSFFAMIIGL 119 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K RK+ G+SQ E K L + TLSN+E +T+P+I I + LD Sbjct: 11 MELSNKIKKRRKELGISQEEAAKKLYISRQTLSNWENDKTLPDIDHLIDISNLYDLSLDE 70 Query: 172 IYFGD 176 + D Sbjct: 71 LIKED 75 >gi|210634331|ref|ZP_03298067.1| hypothetical protein COLSTE_01989 [Collinsella stercoris DSM 13279] gi|210158858|gb|EEA89829.1| hypothetical protein COLSTE_01989 [Collinsella stercoris DSM 13279] Length = 206 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +IK R+A +Q+++A ++ +E ++ L L ++ S D + Sbjct: 2 DISNQIKTRREAMGISQEQLAEKLYVSRQTISNWERNKTYPDVQSLLMLSILFDTSIDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 G+V ++KR+ Sbjct: 62 VKGDVTIMEEAVERDRKRM 80 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 43/77 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K+ R+ G+SQ + + L + T+SN+E+ +T P+++ + + +D Sbjct: 1 MDISNQIKTRREAMGISQEQLAEKLYVSRQTISNWERNKTYPDVQSLLMLSILFDTSIDT 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + GD I+ ++++R + Sbjct: 61 LVKGDVTIMEEAVERDR 77 >gi|163938942|ref|YP_001643826.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861139|gb|ABY42198.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 149 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|225571052|ref|ZP_03780069.1| hypothetical protein CLOHYLEM_07151 [Clostridium hylemonae DSM 15053] gi|225160133|gb|EEG72752.1| hypothetical protein CLOHYLEM_07151 [Clostridium hylemonae DSM 15053] Length = 279 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 EI Q K G I +RK N TQK++A + + A++ +E G+ I + L Sbjct: 2 EINQSEKT-GKFICVMRKEKNLTQKDLAQKLDVTDKAISKWERGISCPDISLLIPLAKVL 60 Query: 84 EISFDWIYDGEVIDRRYEDVTN---KKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 +++ + +GE + ++ L ++LK R M + L Sbjct: 61 DVTTSELLNGERASEEQPEHAEAMVEEALHYSDRSSKLKLKRNRHIMLIVLTASFL 116 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + +RK+K ++Q + + L + + +S +E+G + P+I + +V + G Sbjct: 11 KFICVMRKEKNLTQKDLAQKLDVTDKAISKWERGISCPDISLLIPLAKVLDVTTSELLNG 70 Query: 176 DEVIVPKS 183 + + Sbjct: 71 ERASEEQP 78 >gi|218896089|ref|YP_002444500.1| hypothetical protein BCG9842_B4236 [Bacillus cereus G9842] gi|228964096|ref|ZP_04125221.1| hypothetical protein bthur0004_9510 [Bacillus thuringiensis serovar sotto str. T04001] gi|218544124|gb|ACK96518.1| hypothetical protein BCG9842_B4236 [Bacillus cereus G9842] gi|228795583|gb|EEM43065.1| hypothetical protein bthur0004_9510 [Bacillus thuringiensis serovar sotto str. T04001] Length = 149 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + ++I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDELLRS 64 Query: 94 EVIDRRYEDVTNKK 107 + + +KK Sbjct: 65 DEELTQKVIEDSKK 78 Score = 74.6 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|228938970|ref|ZP_04101570.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971851|ref|ZP_04132472.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978459|ref|ZP_04138836.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis Bt407] gi|228781476|gb|EEM29677.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis Bt407] gi|228787941|gb|EEM35899.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820819|gb|EEM66844.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939471|gb|AEA15367.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 149 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 IGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIHNLILLSEMYNVTLDELI 62 Query: 92 DGEVIDRRY 100 G+ + Sbjct: 63 KGKQNIKEK 71 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSIGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIHNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPK 182 + G + I K Sbjct: 61 LIKGKQNIKEK 71 >gi|108803769|ref|YP_643706.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765012|gb|ABG03894.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 155 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 50/146 (34%), Gaps = 10/146 (6%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL-YLRNEYEISFDWIY 91 G R++++R+ +Q+E++ + V E + + + L + + Sbjct: 8 GARLRELRERAGLSQEELSEIVGYSRTWVAELERQSRTYVLEILVQKLVAALGVGISDL- 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY----E 147 + D L+++R+ G+SQ E + G+ +++ E Sbjct: 67 ----SAYPEPPAPPAEPEDLVVSPGSLRALRERAGLSQEELERRAGLAPGSVARAEGAGE 122 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ ++ + + + Sbjct: 123 GDEIRASVETLWRLARALETSPTHLV 148 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA-RKIKQVTKKHL 169 GARL+ +R+ G+SQ E +++G + ++ E+ ++ +K+ + Sbjct: 4 YLVDGARLRELRERAGLSQEELSEIVGYSRTWVAELERQSRTYVLEILVQKLVAALGVGI 63 Query: 170 DWI 172 + Sbjct: 64 SDL 66 >gi|170760210|ref|YP_001786158.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407199|gb|ACA55610.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 201 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +IK R + +Q+++A ++ +ENG I + L + +S D + Sbjct: 2 DISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDIL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ + + E T + Sbjct: 62 VKGDLEEMKEEIKTEDIK 79 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R D +SQ + + + + T+SN+E G+ P+I + + LD Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + IK + ++ Sbjct: 61 LVKGDLEEMKEEIKTEDIKRFNR 83 >gi|115379785|ref|ZP_01466856.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|310820720|ref|YP_003953078.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115363203|gb|EAU62367.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309393792|gb|ADO71251.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 116 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 12/122 (9%) Query: 25 IRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + + K +G RI+++R TQ+E+A A S +++ E G + L Sbjct: 1 MSELGKRIGQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVAHVETLAALAGA 60 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 +S ++ G + + D + +G++ + +LLG+ + Sbjct: 61 LGVSLGELFAGTEQSLAQTEDLLRPLSDFA----------RARGLTARDVERLLGVARAM 110 Query: 143 LS 144 + Sbjct: 111 FN 112 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDK--GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R + +Q E + + S LS E+G + ++ + L ++ Sbjct: 10 QRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVAHVETLAALAGALGVSLGELF 69 Query: 174 FGDEVIVPKS 183 G E + ++ Sbjct: 70 AGTEQSLAQT 79 >gi|139438005|ref|ZP_01771558.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC 25986] gi|133776202|gb|EBA40022.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC 25986] Length = 238 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ D+R++ +Q+ +A AV+ +E S + L Y +S D + + Sbjct: 7 QRLADLRRSKGFSQEGLARKLGLSRQAVSKWERAESSPDTENLISLAKLYGVSLDELLNP 66 Query: 94 EVIDRRYEDVTNK 106 + N+ Sbjct: 67 SDEIEDDIEFENE 79 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL +R+ KG SQ + LG+ +S +E+ + P+ + + ++ LD + Sbjct: 4 ETAQRLADLRRSKGFSQEGLARKLGLSRQAVSKWERAESSPDTENLISLAKLYGVSLDEL 63 Query: 173 YFGDEVIVP 181 + I Sbjct: 64 LNPSDEIED 72 >gi|83591618|ref|YP_425370.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574532|gb|ABC21083.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 145 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 T + + VG RI++ R +Q++MA + +E G+ S + Sbjct: 14 TNRASEADRHVGKRIRERRVMLGLSQQQMADMIGVTYQQAHKYERGINRISAGRLFEIAQ 73 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYA-IGARLKSIRKDKGMSQIEFGKLLGMPN 140 + ++ +DG + ++ A A +++ R + +SQ+ + Sbjct: 74 VLHVPVNYFFDGLDDEASETLSPRQRMCLELARNFAMIQNERHQEALSQLARALAAQVSV 133 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 TN+ +G R++ R G+SQ + ++G+ YE+G +I Sbjct: 13 PTNRASEADRHVGKRIRERRVMLGLSQQQMADMIGVTYQQAHKYERGINRISAGRLFEIA 72 Query: 163 QVTKKHLDWIYFG-DEVIVPKSIKRAKG 189 QV +++ + G D+ R + Sbjct: 73 QVLHVPVNYFFDGLDDEASETLSPRQRM 100 >gi|126175811|ref|YP_001051960.1| putative phage repressor [Shewanella baltica OS155] gi|125999016|gb|ABN63091.1| putative phage repressor [Shewanella baltica OS155] Length = 233 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G R K+ RK N TQ +++ ++ +E+G S L + S D Sbjct: 1 MKTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPD 60 Query: 89 WIYDGEVIDRRYED 102 W+ G+ + + + Sbjct: 61 WLMFGDSKNTKKPE 74 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K RK ++Q++ K +G+ + T+S +E G T P+ + K+ Q + DW+ FGD Sbjct: 9 KERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDWLMFGDSK 68 Query: 179 IVPKSIKRAK 188 K A+ Sbjct: 69 NTKKPESNAE 78 >gi|229819917|ref|YP_002881443.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565830|gb|ACQ79681.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 195 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + VG R++ +R T E+A S ++ E+G ++ L L + + Sbjct: 9 EPLSAVGPRLRALRHERGLTLSELAERTGISTSTLSRLESGGRKPTLELLLPLARVHGVP 68 Query: 87 FDWIY 91 D + Sbjct: 69 LDDLV 73 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R ++G++ E + G+ STLS E G P ++ + +V LD + Sbjct: 13 AVGPRLRALRHERGLTLSELAERTGISTSTLSRLESGGRKPTLELLLPLARVHGVPLDDL 72 Query: 173 Y 173 Sbjct: 73 V 73 >gi|238855118|ref|ZP_04645444.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|260664951|ref|ZP_05865802.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|282934260|ref|ZP_06339535.1| transcriptional repressor [Lactobacillus jensenii 208-1] gi|313472501|ref|ZP_07812991.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|238832258|gb|EEQ24569.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|239529934|gb|EEQ68935.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|260561434|gb|EEX27407.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|281301669|gb|EFA93938.1| transcriptional repressor [Lactobacillus jensenii 208-1] Length = 138 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K++R +Q+E+A N +V+ +E G I L Y++S D+I Sbjct: 3 QINERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSKLYDVSIDYI 62 Query: 91 YDGEVIDRRYEDVTNKKR 108 DR+ + ++ Sbjct: 63 VGNTEFDRKEDTQKTSEQ 80 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I RLK +R + GMSQ E L + ++S +E G ++P+I +++ ++ +D+I Sbjct: 4 INERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSKLYDVSIDYIV 63 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSK 197 E + ++ KK K Sbjct: 64 GNTEFDRKEDTQKTSEQAVLKKQK 87 >gi|150388718|ref|YP_001318767.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948580|gb|ABR47108.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 101 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 34/65 (52%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK++R+ + +Q ++A + + ++ +E+G+ SI L + + +S D++ + Sbjct: 3 RIKELRQEKDFSQIQLAKQFDITQQTISNYESGVREPSITTLKNLADFFNVSIDYLLERT 62 Query: 95 VIDRR 99 I Sbjct: 63 NIPEP 67 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +R++K SQI+ K + T+SNYE G P I + + +D++ Sbjct: 4 IKELRQEKDFSQIQLAKQFDITQQTISNYESGVREPSITTLKNLADFFNVSIDYLLERTN 63 Query: 178 VIVPKSI 184 + P + Sbjct: 64 IPEPVGV 70 >gi|228926172|ref|ZP_04089247.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932427|ref|ZP_04095308.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|254725583|ref|ZP_05187365.1| hypothetical protein BantA1_24526 [Bacillus anthracis str. A1055] gi|228827117|gb|EEM72870.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833425|gb|EEM78987.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 149 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|229550955|ref|ZP_04439680.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229315670|gb|EEN81643.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 290 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 40/78 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +L+ IR M+Q + + L + T+SN+E R +P+++ +I ++ LD + Sbjct: 91 FSKQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDTLI 150 Query: 174 FGDEVIVPKSIKRAKGNQ 191 D + K IK +K ++ Sbjct: 151 LDDSELNEKLIKDSKVSR 168 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ IR A++ TQ ++A + V+ +EN + + + +S D + Sbjct: 90 NFSKQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDTL 149 Query: 91 YDGEVI 96 + Sbjct: 150 ILDDSE 155 >gi|167751674|ref|ZP_02423801.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702] gi|167655482|gb|EDR99611.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702] Length = 271 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 23/159 (14%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I + RKA TQ+ +A + A++ +ENG I + + + D + Sbjct: 2 NIGNVISEKRKALGLTQQALAEKLHVSFQAISKWENGTSCPDIELLPQIAAILKTTIDSL 61 Query: 91 YDGEVIDRRYEDV--------TNKKRLDPYAIGARLK---------SIRKDKGMSQIEFG 133 D K + R+K I +G + Sbjct: 62 LGYPSQSVTDYDKRYGNEEYYWGLKPNNLCYEIMRIKPPVKPYKVIDIGCGEGKDAVFLA 121 Query: 134 KLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G + EQG + AR++ +D+ Sbjct: 122 -RNGYDVTAFDASEQG-----LSKARELADTYGVKVDFF 154 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG + RK G++Q + L + +S +E G + P+I+ +I + K +D Sbjct: 1 MNIGNVISEKRKALGLTQQALAEKLHVSFQAISKWENGTSCPDIELLPQIAAILKTTIDS 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|154503168|ref|ZP_02040228.1| hypothetical protein RUMGNA_00992 [Ruminococcus gnavus ATCC 29149] gi|153796162|gb|EDN78582.1| hypothetical protein RUMGNA_00992 [Ruminococcus gnavus ATCC 29149] Length = 154 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG +IK R+ +Q+E+A ++ +ENG + + L + S D + Sbjct: 2 DVGKQIKKFRQDLKLSQEELASKIFVTRQTISNWENGKNYPDVNSLVMLSQLFNTSLDIL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G+VI+ + + Sbjct: 62 VKGDVIEMEKQVEQDD 77 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 41/83 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K R+D +SQ E + + T+SN+E G+ P++ + Q+ LD Sbjct: 1 MDVGKQIKKFRQDLKLSQEELASKIFVTRQTISNWENGKNYPDVNSLVMLSQLFNTSLDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + K +++ + + Sbjct: 61 LVKGDVIEMEKQVEQDDVRRFKR 83 >gi|327463455|gb|EGF09774.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 167 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 E + V ++ D Y Sbjct: 62 LLEESDKPEIKPVLSEDEKDRYYKE 86 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E IK + K+ KS Sbjct: 61 LLL--EESDKPEIKPVLSEDEKDRYYKEVKS 89 >gi|229042877|ref|ZP_04190612.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676] gi|228726479|gb|EEL77701.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676] Length = 149 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 35/74 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVIDRRYEDVTNKK 107 + + +K+ Sbjct: 65 DEELTQKIIEDSKR 78 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKIIEDSK 77 >gi|154685684|ref|YP_001420845.1| Xre [Bacillus amyloliquefaciens FZB42] gi|154351535|gb|ABS73614.1| Xre [Bacillus amyloliquefaciens FZB42] Length = 112 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R TQ+E+A + + +ENG L + +++S D++ Sbjct: 2 IGGRLKSLRGKK--TQEEVANHIGVSRARYSHYENGRSEPDYDTLQKLADYFKVSTDYLL 59 Query: 92 DGEVIDRRYE 101 G+ Sbjct: 60 TGKEPSDEDM 69 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LKS+R K +Q E +G+ + S+YE GR+ P+ +K+ K D++ G E Sbjct: 6 LKSLRGKK--TQEEVANHIGVSRARYSHYENGRSEPDYDTLQKLADYFKVSTDYLLTGKE 63 Query: 178 VIVP 181 Sbjct: 64 PSDE 67 >gi|50196919|ref|YP_052614.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|165871721|ref|ZP_02216366.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488] gi|167638961|ref|ZP_02397235.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193] gi|170707968|ref|ZP_02898417.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389] gi|177653556|ref|ZP_02935730.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174] gi|190566543|ref|ZP_03019460.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I] gi|229601932|ref|YP_002865577.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248] gi|254734209|ref|ZP_05191922.1| hypothetical protein BantWNA_03453 [Bacillus anthracis str. Western North America USA6153] gi|254753484|ref|ZP_05205520.1| hypothetical protein BantV_13483 [Bacillus anthracis str. Vollum] gi|254758581|ref|ZP_05210608.1| hypothetical protein BantA9_09739 [Bacillus anthracis str. Australia 94] gi|50082981|gb|AAT70122.1| hypothetical protein GBAA_1022 [Bacillus anthracis str. 'Ames Ancestor'] gi|164712622|gb|EDR18154.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488] gi|167513091|gb|EDR88463.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193] gi|170127128|gb|EDS96006.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389] gi|172081360|gb|EDT66434.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174] gi|190562095|gb|EDV16063.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I] gi|229266340|gb|ACQ47977.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248] Length = 149 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|30019187|ref|NP_830818.1| transcriptional repressor [Bacillus cereus ATCC 14579] gi|229108598|ref|ZP_04238210.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15] gi|229126443|ref|ZP_04255458.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4] gi|229143741|ref|ZP_04272162.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24] gi|29894730|gb|AAP08019.1| Transcriptional repressor [Bacillus cereus ATCC 14579] gi|228639694|gb|EEK96103.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24] gi|228657023|gb|EEL12846.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4] gi|228674853|gb|EEL30085.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15] Length = 149 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + L + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKIIEDSK 77 >gi|182436872|ref|YP_001824591.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777467|ref|ZP_08236732.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465388|dbj|BAG19908.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657800|gb|EGE42646.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 210 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++++R+ + T E+A ES ++ E G ++ L L + + D + Sbjct: 26 VGPRLRELRRRHGMTLAELAERTGISESTLSRLEGGTRKPTLELLLPLAEVHAVPLDELV 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+ +R+ GM+ E + G+ STLS E G P ++ + +V LD + Sbjct: 25 AVGPRLRELRRRHGMTLAELAERTGISESTLSRLEGGTRKPTLELLLPLAEVHAVPLDEL 84 Query: 173 Y----FGDEVIVPKSIKR 186 GD I + + R Sbjct: 85 VGAPRTGDPRIHLRPVTR 102 >gi|294790815|ref|ZP_06755973.1| DNA-binding protein [Scardovia inopinata F0304] gi|294458712|gb|EFG27065.1| DNA-binding protein [Scardovia inopinata F0304] Length = 373 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +R+ TQ+E+A + AV+ +E+G I + + ++ + D + Sbjct: 5 QIGRNISQLRREKGITQEELAEYLGVSKPAVSKWESGQSYPDILLLPIIASYFDKTVDDL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + + L Sbjct: 65 LGYQPQMTAEDIKKLYIEL 83 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG + +R++KG++Q E + LG+ +S +E G++ P+I I K Sbjct: 1 MQSIQIGRNISQLRREKGITQEELAEYLGVSKPAVSKWESGQSYPDILLLPIIASYFDKT 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK+ Sbjct: 61 VDDLLGYQPQMTAEDIKK 78 >gi|256843477|ref|ZP_05548965.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|262046663|ref|ZP_06019624.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|256614897|gb|EEU20098.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|260573112|gb|EEX29671.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 213 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 2/142 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K I TQ+++A ++N + G + + + ++ D + Sbjct: 29 ANLKRILYNQKLTQRDLAALTGISIPSINRYYLGNGAIPQNNLVKIAKALHVAPDELDPS 88 Query: 94 EVIDRRYEDVTNKKRLDP--YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + + +K DP LK + ++ +S + L + T+ + G Sbjct: 89 YQPTKDFLSQLAEKTDDPDLKFRTDYLKQLIQNSSLSVQKVADRLNIKPITVYKWLAGVN 148 Query: 152 IPEIKPARKIKQVTKKHLDWIY 173 P + K+ + ++ + Sbjct: 149 TPNKENTAKLADLFNVSVNSLV 170 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 8/70 (11%), Positives = 26/70 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K + + ++ + +++A N V + G+ + + L + + +S + + D Sbjct: 115 LKQLIQNSSLSVQKVADRLNIKPITVYKWLAGVNTPNKENTAKLADLFNVSVNSLVDTSK 174 Query: 96 IDRRYEDVTN 105 Sbjct: 175 EIDLTPQQNK 184 Score = 40.7 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 26/73 (35%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 Y K+ A LK I ++ ++Q + L G+ +++ Y G Sbjct: 13 YIMKDKLKQSIIAITSANLKRILYNQKLTQRDLAALTGISIPSINRYYLGNGAIPQNNLV 72 Query: 160 KIKQVTKKHLDWI 172 KI + D + Sbjct: 73 KIAKALHVAPDEL 85 >gi|225375055|ref|ZP_03752276.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM 16841] gi|225213127|gb|EEG95481.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM 16841] Length = 305 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 3/100 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G I+ R TQ+++A E AV+ +E G I L E +S Sbjct: 4 EKIGKYIRKKRIEKGMTQQQLAEKIQVTEKAVSRWETGRGVPDISLLEPLAEELHVSVTE 63 Query: 90 IYDGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + +GE + ++ + +D + ++ RK+K Sbjct: 64 LLNGEERVQEEAVHDTKAHMADIDITNVIEYVQENRKEKY 103 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 39/80 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG ++ R +KGM+Q + + + + +S +E GR +P+I + + Sbjct: 1 MEKEKIGKYIRKKRIEKGMTQQQLAEKIQVTEKAVSRWETGRGVPDISLLEPLAEELHVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAK 188 + + G+E + +++ K Sbjct: 61 VTELLNGEERVQEEAVHDTK 80 >gi|329117486|ref|ZP_08246203.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907891|gb|EGE54805.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 194 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 36/76 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ RK +Q+++A ++ +EN I + L N +++S D + Sbjct: 2 ELGKKLSSCRKKAGLSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFQLSLDQL 61 Query: 91 YDGEVIDRRYEDVTNK 106 +G++ + + ++ Sbjct: 62 VEGDIDEMKKIVQSDD 77 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 38/75 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +L S RK G+SQ + + + + T+SN+E ++ P+I + + + LD Sbjct: 1 MELGKKLSSCRKKAGLSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFQLSLDQ 60 Query: 172 IYFGDEVIVPKSIKR 186 + GD + K ++ Sbjct: 61 LVEGDIDEMKKIVQS 75 >gi|291009445|ref|ZP_06567418.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 190 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 34/91 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + VG R++ IR+ T ++ S ++ E+G S+ L + ++ Sbjct: 1 MDEVLAAVGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQ 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 + D + + + +R D + Sbjct: 61 VPLDELVGAPPVGDPRVRLKPIRRGDMTVVP 91 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+ IR+ +G + K G+ STLS E G+ P ++ I Q + LD + Sbjct: 7 AVGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQVPLDEL 66 Query: 173 YF----GDEVIVPKSIKRAKG 189 GD + K I+R Sbjct: 67 VGAPPVGDPRVRLKPIRRGDM 87 >gi|229084128|ref|ZP_04216417.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44] gi|228699164|gb|EEL51860.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44] Length = 149 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 36/74 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVIDRRYEDVTNKK 107 + ++ +K+ Sbjct: 65 DEELKQKVIQDSKQ 78 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELKQKVIQDSK 77 >gi|191636948|ref|YP_001986114.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190711250|emb|CAQ65256.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327384151|gb|AEA55625.1| Transcriptional regulator [Lactobacillus casei BD-II] Length = 202 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 39/80 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L IR M+Q+ + L + T+SN+E R +P+++ +I ++ + LD Sbjct: 1 MNFSKQLHQIRMAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D + K I +K ++ Sbjct: 61 LILDDPKLNEKLIHDSKISR 80 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 8/132 (6%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ IR A+ TQ +A + V+ +EN + + +E+S D + Sbjct: 2 NFSKQLHQIRMAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM--------SQIEFGKLLGMPNST 142 + +K + ++ GM +L+ Sbjct: 62 ILDDPKLNEKLIHDSKISRHQMIMAVMTTAVAMMSGMAATTLFGFFPQWLAQLIWWSYVA 121 Query: 143 LSNYEQGRTIPE 154 + P+ Sbjct: 122 VLFLFSYMLSPK 133 >gi|332686792|ref|YP_004456566.1| XRE family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332370801|dbj|BAK21757.1| transcriptional regulator, XRE family [Melissococcus plutonius ATCC 35311] Length = 219 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ ++K R N TQK++A N + ++ +E G I L L + IS D Sbjct: 2 ELSVQLKSWRNKNGWTQKDLAEKLNVSDKTISSWETGRTYPDISMLLNLSELFNISLDEF 61 Query: 91 YDGEVIDRRYEDVT 104 G+ + D Sbjct: 62 MRGDSKMIKKIDKD 75 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +LKS R G +Q + + L + + T+S++E GRT P+I + ++ LD Sbjct: 1 MELSVQLKSWRNKNGWTQKDLAEKLNVSDKTISSWETGRTYPDISMLLNLSELFNISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 GD ++ K K K ++ K Sbjct: 61 FMRGDSKMIKKIDKDLKLTKTYK 83 >gi|28379011|ref|NP_785903.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1] gi|28271849|emb|CAD64754.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1] Length = 120 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI ++RK + TQ +A N +S + +E+ S S + L + + ++ D++ Sbjct: 3 IGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + K D Sbjct: 63 GKNGTPKWANEKDTKDLQDFLDANE 87 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+ ++RK K ++Q + + ST++++E R K+ D+ Sbjct: 1 MTIGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|118479525|ref|YP_896676.1| MerR family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118418750|gb|ABK87169.1| transcriptional regulator, MerR family [Bacillus thuringiensis str. Al Hakam] Length = 237 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 42/110 (38%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + ++G+ I++IR+ T ++ G + ++ EN S SI + Sbjct: 47 IVVYKKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETI 106 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 N + ++ + + +K R++ + + G+ Sbjct: 107 SNFLNVPLPYLLLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 156 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 2/101 (1%) Query: 90 IYDGEVIDRRYEDVTN--KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 I+ G++ KK LD IG+ ++ IR+ +G++ + + G+ +S E Sbjct: 33 IFTGKIYIFFAMIQIVVYKKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVE 92 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAK 188 +T P I I L ++ + + K + Sbjct: 93 NNKTSPSISTLETISNFLNVPLPYLLLEQKDRLKVVKKVER 133 >gi|77404536|ref|YP_345112.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|77019917|dbj|BAE46292.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 160 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 18/138 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R+A + +A A S V +ENG S + + I E+ Sbjct: 26 LKKAREARKVGRAALARSAGVSSSTVRRWENGQVSPGVDLLAQVAVVLGI--------EI 77 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 D V + D R KG++Q++ +G+ + E+G + Sbjct: 78 SDVVLVPVDTRYPGDW----------RVLKGLTQMQLAAAVGVTTEVIGAIERGERVVPD 127 Query: 156 KPARKIKQVTKKHLDWIY 173 A K+ + ++ + Sbjct: 128 AIATKLAKKLGISVEELV 145 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A LK R+ + + + + G+ +ST+ +E G+ P + ++ V + + Sbjct: 21 FSPAALKKAREARKVGRAALARSAGVSSSTVRRWENGQVSPGVDLLAQVAVVLGIEISDV 80 Query: 173 Y 173 Sbjct: 81 V 81 >gi|255658714|ref|ZP_05404123.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849104|gb|EEX69111.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 189 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++ +RK + TQ E + SAV ++E+G + + Y +S D++ Sbjct: 3 FADRLRALRKKSGLTQDEFSKQTGIGRSAVGMYESGKREPNYTTLSKVARFYHVSTDYLL 62 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + T P+ + +L+S+ Sbjct: 63 GRTDTPAEPPTRKTEPSARKPHDVQQQLRSL 93 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL+++RK G++Q EF K G+ S + YE G+ P K+ + D+ Sbjct: 1 MVFADRLRALRKKSGLTQDEFSKQTGIGRSAVGMYESGKREPNYTTLSKVARFYHVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + ++ + Sbjct: 61 LLGRTDTPAEPPTRKTE 77 >gi|153812180|ref|ZP_01964848.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174] gi|149831835|gb|EDM86921.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174] Length = 208 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K +RK Q+++A N V+ +E G I + + + Y+IS I Sbjct: 12 KIGNFLKKLRKEKGIIQEQLAEILNVSGRTVSRWETGNNMPDISILVDIADYYDISIPEI 71 Query: 91 YDGEVIDRRYEDVTNK--KRLDPYAIGARLKSIRKDK 125 GE + K K + YA + K ++ K Sbjct: 72 ISGERKSEMMNEEERKIAKTMSDYATTEKEKIFKEMK 108 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + +D IG LK +RK+KG+ Q + ++L + T+S +E G +P+I I Sbjct: 1 MMKGGVEVDQVKIGNFLKKLRKEKGIIQEQLAEILNVSGRTVSRWETGNNMPDISILVDI 60 Query: 162 KQVTKKHLDWIYFGD---EVIVPKSIKRAKGNQSSKKSKKDK 200 + I G+ E++ + K AK ++K+K Sbjct: 61 ADYYDISIPEIISGERKSEMMNEEERKIAKTMSDYATTEKEK 102 >gi|331087042|ref|ZP_08336117.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409492|gb|EGG88935.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 296 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK +Q+E+AI N + V+ +EN + + L IS + Sbjct: 2 LGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAELL 61 Query: 92 DGEVID 97 + Sbjct: 62 GTDEQP 67 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 7/95 (7%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++K RK+K MSQ E L + T+S +E ++P+ + ++ +V + + Sbjct: 1 MLGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAEL 60 Query: 173 YFGDEVIVPKS-------IKRAKGNQSSKKSKKDK 200 DE +S I+ A+ N+ K +++ Sbjct: 61 LGTDEQPHSESLSAETLAIELARLNEELAKQVQER 95 >gi|304404381|ref|ZP_07386042.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346188|gb|EFM12021.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 109 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++++R N +Q+E+A SA + +E + L + +E+S D+I Sbjct: 5 MGDRLRELRLRKNLSQEEVAKQIGITRSAYSHYEINNRQPVYDTLIKLSSYFEVSLDYII 64 Query: 92 DGEVIDRR 99 GE Sbjct: 65 GGEFSKSE 72 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G RL+ +R K +SQ E K +G+ S S+YE P K+ + LD+ Sbjct: 3 MTMGDRLRELRLRKNLSQEEVAKQIGITRSAYSHYEINNRQPVYDTLIKLSSYFEVSLDY 62 Query: 172 IYFGD 176 I G+ Sbjct: 63 IIGGE 67 >gi|291548990|emb|CBL25252.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 112 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 2/91 (2%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 L + LK + + E K +G +K R TQ+ +A AV Sbjct: 21 LLTLIVRALLKYIHSKD--VRQEKSVVRKSLGEALKAHRTQCKMTQEFVAETIGVSRQAV 78 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 + +ENG S L Y +S + + Sbjct: 79 SKWENGTSDPSTSNLFALAKLYGVSVEELLK 109 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 34/79 (43%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 +DV +K + ++G LK+ R M+Q + +G+ +S +E G + P Sbjct: 34 HSKDVRQEKSVVRKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNL 93 Query: 159 RKIKQVTKKHLDWIYFGDE 177 + ++ ++ + E Sbjct: 94 FALAKLYGVSVEELLKEVE 112 >gi|239828436|ref|YP_002951060.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239808729|gb|ACS25794.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 137 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K +RK +N TQ+++A N S ++ +ENG ++ L N Y++S D++ Sbjct: 4 NLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGDLLPDVQSLQKLSNLYKVSVDFL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + N L Sbjct: 64 IGKHTTKKELLREVNLLYQTDRIDEKML 91 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 34/62 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +LK +RK +Q + + L + S +S +E G +P+++ +K+ + K +D+ Sbjct: 3 MNLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGDLLPDVQSLQKLSNLYKVSVDF 62 Query: 172 IY 173 + Sbjct: 63 LI 64 >gi|324327531|gb|ADY22791.1| helix-turn-helix domain-containing protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 262 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 DGEVIDRRYEDV 103 Sbjct: 63 KETAEKSNENMD 74 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFG 175 + Sbjct: 61 LLKE 64 >gi|304405221|ref|ZP_07386881.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346100|gb|EFM11934.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 127 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 32/79 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++GTRI +R+ TQ++ + +A++ +E + + ++ D++ Sbjct: 2 NIGTRIAHLREQRGWTQEQTSHSLGISRAALSHYEKNRREPDTETLTKFADLFNVTIDFL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + D ++ + Sbjct: 62 VGRTNKSEQVLDPQVREFV 80 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+ +R+ +G +Q + LG+ + LS+YE+ R P+ + K + +D+ Sbjct: 1 MNIGTRIAHLREQRGWTQEQTSHSLGISRAALSHYEKNRREPDTETLTKFADLFNVTIDF 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|148380346|ref|YP_001254887.1| DNA-binding phage protein [Clostridium botulinum A str. ATCC 3502] gi|148289830|emb|CAL83938.1| putative DNA-binding phage protein [Clostridium botulinum A str. ATCC 3502] Length = 144 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G RIK++R+ Q E++ N + +V+ +EN + + + + S D Sbjct: 1 MKTIGERIKELREEKGINQLELSKILNVHKGSVSNWENNKRTPDADMLTKIADFFNCSVD 60 Query: 89 WIYDGEVIDRRYED 102 ++ I + Sbjct: 61 YLLGNTDIKNKLNM 74 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+K +R++KG++Q+E K+L + ++SN+E + P+ KI +D Sbjct: 1 MKTIGERIKELREEKGINQLELSKILNVHKGSVSNWENNKRTPDADMLTKIADFFNCSVD 60 Query: 171 WIYFGDEVIVPKSIKR 186 ++ ++ ++ + Sbjct: 61 YLLGNTDIKNKLNMSK 76 >gi|217971957|ref|YP_002356708.1| putative phage repressor [Shewanella baltica OS223] gi|217497092|gb|ACK45285.1| putative phage repressor [Shewanella baltica OS223] Length = 233 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G R K+ RK N TQ +++ ++ +E+G S L + S D Sbjct: 1 MKTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPD 60 Query: 89 WIYDGEVIDRRYED 102 W+ G+ + + + Sbjct: 61 WLMFGDSKNTKKPE 74 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K RK ++Q++ K +G+ + T+S +E G T P+ + K+ Q + DW+ FGD Sbjct: 9 KERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDWLMFGDSK 68 Query: 179 IVPKSIKRAK 188 K A+ Sbjct: 69 NTKKPESNAE 78 >gi|332523977|ref|ZP_08400229.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332315241|gb|EGJ28226.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 194 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 33/70 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ RK +Q+++A ++ +EN I + L N + +S D + Sbjct: 2 ELGKKLSSCRKKAGFSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFNLSLDQL 61 Query: 91 YDGEVIDRRY 100 +G++ + + Sbjct: 62 VEGDIDEMKK 71 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 39/83 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +L S RK G SQ + + + + T+SN+E ++ P+I + + LD Sbjct: 1 MELGKKLSSCRKKAGFSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFNLSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + K ++ Q ++ Sbjct: 61 LVEGDIDEMKKLVQSDDLQQFNR 83 >gi|325289343|ref|YP_004265524.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964744|gb|ADY55523.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 109 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RI RK N TQ ++A + ++ EN SI L + +I+ D Sbjct: 5 YKVLGERIAKRRKVLNLTQDDVAEATGLSNNHISNIENNHSIPSIETLLKICEVLDITPD 64 Query: 89 WIYDG 93 + G Sbjct: 65 YFLLG 69 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++D +G R+ RK ++Q + + G+ N+ +SN E +IP I+ KI +V Sbjct: 1 MKIDYKVLGERIAKRRKVLNLTQDDVAEATGLSNNHISNIENNHSIPSIETLLKICEVLD 60 Query: 167 KHLDWIYFG 175 D+ G Sbjct: 61 ITPDYFLLG 69 >gi|227530294|ref|ZP_03960343.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227349771|gb|EEJ40062.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 203 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +IK+ R+ + TQ E+A AV+ +E+ + + + N Y+IS D + Sbjct: 2 KFGEQIKERRQELDLTQAEVAEKYFVTRQAVSNWEHDKTYPDLNMLVKISNVYQISLDSL 61 Query: 91 YDGEVI 96 + Sbjct: 62 LREDQK 67 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++K R++ ++Q E + + +SN+E +T P++ KI V + LD Sbjct: 1 MKFGEQIKERRQELDLTQAEVAEKYFVTRQAVSNWEHDKTYPDLNMLVKISNVYQISLDS 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + D+ + + N Sbjct: 61 LLREDQKLKDYLEQGRAMN 79 >gi|315648384|ref|ZP_07901483.1| putative transcriptional regulator [Paenibacillus vortex V453] gi|315276078|gb|EFU39424.1| putative transcriptional regulator [Paenibacillus vortex V453] Length = 420 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ+++A G AV+ +ENG I + L + + + D I+ Sbjct: 8 MGNNIVRLRKQLGMTQEQLANGLGVSYQAVSKWENGQTCPDIIHIPLLADVFGTTIDEIF 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 V + L Sbjct: 68 GRSVHPIDLRSGLVLEYL 85 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G + +RK GM+Q + LG+ +S +E G+T P+I + V +D Sbjct: 5 NNVMGNNIVRLRKQLGMTQEQLANGLGVSYQAVSKWENGQTCPDIIHIPLLADVFGTTID 64 Query: 171 WIY 173 I+ Sbjct: 65 EIF 67 >gi|325674855|ref|ZP_08154542.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325554441|gb|EGD24116.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 196 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ + VG R++ +R+ T ++A S ++ E G ++ L L Y Sbjct: 6 DMDRILDAVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLPLARAY 65 Query: 84 EISFDWIY 91 + D + Sbjct: 66 GVPLDELV 73 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 103 VTNKKRLDPY--AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + + +D A+G RL+++R+ +G + + G+ STLS E G+ P ++ Sbjct: 1 MDDADDMDRILDAVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLP 60 Query: 161 IKQVTKKHLDWIYFGDEVIVPK 182 + + LD + E P+ Sbjct: 61 LARAYGVPLDELVGAPETGDPR 82 >gi|238852875|ref|ZP_04643280.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4] gi|238834569|gb|EEQ26801.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4] Length = 335 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 5/110 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I D+RK NN +Q+ +A N AV+ +E+ I + L + ++ D++ Sbjct: 3 LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDYLL 62 Query: 92 DG-----EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E + D L + L + RK+ + ++ Sbjct: 63 KSGEPSFEFKNEDINDKDKLPVLSDELVRKYLTASRKNAKFRALAIALII 112 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 31/70 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +RK +SQ + + + +S +E ++IP+I+ + ++ D+ Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDY 60 Query: 172 IYFGDEVIVP 181 + E Sbjct: 61 LLKSGEPSFE 70 >gi|256848433|ref|ZP_05553875.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256714700|gb|EEU29679.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 211 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK RK TQ +A ++ +E G + + + + Y+IS D + + Sbjct: 6 QIKMRRKKRGLTQSVVAKKLYVTRQTISNWEQGKSYPDLNTLVRISDFYQISIDSLLRED 65 Query: 95 VI 96 Sbjct: 66 QD 67 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K RK +G++Q K L + T+SN+EQG++ P++ +I + +D Sbjct: 1 MKFSTQIKMRRKKRGLTQSVVAKKLYVTRQTISNWEQGKSYPDLNTLVRISDFYQISIDS 60 Query: 172 IYFGDEVIVP 181 + D+ + Sbjct: 61 LLREDQDLQE 70 >gi|289578606|ref|YP_003477233.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528319|gb|ADD02671.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 129 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+ +RK TQKE+A + ++E G L + + +S D++ Sbjct: 2 NFAKRLATLRKEAGLTQKELADKLGVSRGTIGMYEIGQRDPDTETLQKLSDIFGVSVDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 I +++T DP + Sbjct: 62 LGKTDIRNPSDEITEAVEDDPELLEFW 88 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL ++RK+ G++Q E LG+ T+ YE G+ P+ + +K+ + +D+ Sbjct: 1 MNFAKRLATLRKEAGLTQKELADKLGVSRGTIGMYEIGQRDPDTETLQKLSDIFGVSVDY 60 Query: 172 IYFGDEVIVPKS 183 + ++ P Sbjct: 61 LLGKTDIRNPSD 72 >gi|199599444|ref|ZP_03212837.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|199589656|gb|EDY97769.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] Length = 216 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 35/86 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ ++ TQ ++ + ++ +ENG I + + + Y+IS D + Sbjct: 2 QFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + ++ + +K+ Sbjct: 62 LREDQDIVQHYETISKQAQRYQKYFQ 87 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ ++Q++ G L + T+S++E GR+ P+I I + + LD Sbjct: 1 MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ IV +K Q +K Sbjct: 61 LLREDQDIVQHYETISKQAQRYQK 84 >gi|260892045|ref|YP_003238142.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864186|gb|ACX51292.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 118 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK +R+ G+ Q + +++G+ ST++N+E+G P ++ K+ Q+ LD Sbjct: 1 MIRFGDTLKQLRQRMGLRQDDVARMVGVERSTVANWERGVKQPSLETLVKLSQLFGVSLD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + EV + R Sbjct: 61 ELVGVTEVTTSSPLSR 76 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +R+ Q ++A S V +E G+ S+ + L + +S D + Sbjct: 4 FGDTLKQLRQRMGLRQDDVARMVGVERSTVANWERGVKQPSLETLVKLSQLFGVSLDELV 63 >gi|257868167|ref|ZP_05647820.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257874560|ref|ZP_05654213.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257802281|gb|EEV31153.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808724|gb|EEV37546.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 77 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+D+R+ N+ TQ+++A N +S + +ENG I+ + L + Y+ S D++ + Sbjct: 6 QRIRDLREDNDLTQRQIATLLNVSQSTYSRYENGALDIPIQTLIKLASHYDTSIDYLVN 64 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R++ +R+D ++Q + LL + ST S YE G I+ K+ +D Sbjct: 1 MRTMFQRIRDLREDNDLTQRQIATLLNVSQSTYSRYENGALDIPIQTLIKLASHYDTSID 60 Query: 171 WIY 173 ++ Sbjct: 61 YLV 63 >gi|238923198|ref|YP_002936713.1| hypothetical protein EUBREC_0793 [Eubacterium rectale ATCC 33656] gi|238925050|ref|YP_002938566.1| hypothetical protein EUBREC_2702 [Eubacterium rectale ATCC 33656] gi|238874872|gb|ACR74579.1| Hypothetical protein EUBREC_0793 [Eubacterium rectale ATCC 33656] gi|238876725|gb|ACR76432.1| Hypothetical protein EUBREC_2702 [Eubacterium rectale ATCC 33656] gi|291530658|emb|CBK96243.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 123 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 2/91 (2%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 L + LK + + E K +G +K R TQ+ +A AV Sbjct: 32 LLTLIVRALLKYIHSKD--VRQEKSVVRKSLGEALKVHRTQCKMTQEFVAETIGVSRQAV 89 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 + +ENG S L Y IS + + Sbjct: 90 SKWENGTSDPSTSNLFALAKLYGISVEELLK 120 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 +DV +K + ++G LK R M+Q + +G+ +S +E G + P Sbjct: 45 HSKDVRQEKSVVRKSLGEALKVHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNL 104 Query: 159 RKIKQVTKKHLDWIYFGDE 177 + ++ ++ + E Sbjct: 105 FALAKLYGISVEELLKEVE 123 >gi|256852139|ref|ZP_05557526.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260661292|ref|ZP_05862205.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|282932144|ref|ZP_06337598.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297204982|ref|ZP_06922378.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] gi|256615551|gb|EEU20741.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260547747|gb|EEX23724.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|281303737|gb|EFA95885.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297149560|gb|EFH29857.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] Length = 138 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 7/98 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K++R +Q+E+A N +V+ +E G I L Y++S D+I Sbjct: 3 QINERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSQLYDVSIDYI 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + D++ E K LK R + + Sbjct: 63 VGNKNFDKKEETQETSK-------QNLLKKQRAKRALK 93 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I RLK +R + GMSQ E L + ++S +E G ++P+I +++ Q+ +D+I Sbjct: 4 INERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSQLYDVSIDYIV 63 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 G++ K + Q+ K ++ K+ Sbjct: 64 -GNKNFDKKEETQETSKQNLLKKQRAKR 90 >gi|317471258|ref|ZP_07930622.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp. 3_2_56FAA] gi|316901266|gb|EFV23216.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp. 3_2_56FAA] Length = 155 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G I +R+ TQ E+ V+ +ENG I L L E+EIS + Sbjct: 18 QKKIGIFIALLRRERGITQAELGEKIGVTNKTVSRWENGNYMPDIATMLSLCEEFEISIN 77 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + G+ + + + Sbjct: 78 ELLSGQRLGSDEFRKKADENV 98 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 47/103 (45%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 E LD IG + +R+++G++Q E G+ +G+ N T+S +E G +P+I Sbjct: 3 FSCYNEHKKEGIILDQKKIGIFIALLRRERGITQAELGEKIGVTNKTVSRWENGNYMPDI 62 Query: 156 KPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + + ++ + G + + K+A N ++ Sbjct: 63 ATMLSLCEEFEISINELLSGQRLGSDEFRKKADENVVGSLKRE 105 >gi|291543170|emb|CBL16280.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 164 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +R+ + TQ+++ ++ +ENG I L E+ +S + + Sbjct: 5 KIGKFIATLRRQSGLTQEKLGEKIGVTNKTISPWENGNYMPDIEMLQLLAKEFNVSINEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 G+ + + + Sbjct: 65 LAGQKMSDEEFRKNADENI 83 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 44/82 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + ++R+ G++Q + G+ +G+ N T+S +E G +P+I+ + + + Sbjct: 1 MDQIKIGKFIATLRRQSGLTQEKLGEKIGVTNKTISPWENGNYMPDIEMLQLLAKEFNVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 ++ + G ++ + K A N Sbjct: 61 INELLAGQKMSDEEFRKNADEN 82 >gi|257054282|ref|YP_003132114.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256584154|gb|ACU95287.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 201 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ T E+A ES ++ E+G ++ L L Y + D + Sbjct: 12 VGPRLRALRRHRGITLAELATATGVSESTLSRLESGQRRATLELLLPLARVYNVPLDDLV 71 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+ +G++ E G+ STLS E G+ ++ + +V LD + Sbjct: 11 AVGPRLRALRRHRGITLAELATATGVSESTLSRLESGQRRATLELLLPLARVYNVPLDDL 70 Query: 173 Y 173 Sbjct: 71 V 71 >gi|240144293|ref|ZP_04742894.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203709|gb|EEV01994.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 111 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+KD+R +Q+ +A N + + +EN +I + + +++S D++ Sbjct: 2 NRLKDLRLKMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLIG- 60 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 ++ + A LK R Sbjct: 61 -YSSCAHKVEEVSETALNEDELAFLKKYR 88 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 1/92 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R G+SQ L + T+ YE P I + + +D++ Sbjct: 1 MNRLKDLRLKMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLIG 60 Query: 175 GDEVIVP-KSIKRAKGNQSSKKSKKDKKSSNP 205 + + N+ K +S NP Sbjct: 61 YSSCAHKVEEVSETALNEDELAFLKKYRSINP 92 >gi|225571094|ref|ZP_03780111.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM 15053] gi|225160175|gb|EEG72794.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM 15053] Length = 158 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + +I +RK+N+ TQ+E+A N +V+ +E+G + + L + + ++ D Sbjct: 5 FMEFAEKILTLRKSNDLTQEELAEKLNVSRQSVSKWESGQAVPELEKIVALSSVFNVTTD 64 Query: 89 WIYDGEVIDRRYEDVT 104 ++ ID Sbjct: 65 YLLKPAEIDELSVKTN 80 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ ++RK ++Q E + L + ++S +E G+ +PE++ + V D Sbjct: 5 FMEFAEKILTLRKSNDLTQEELAEKLNVSRQSVSKWESGQAVPELEKIVALSSVFNVTTD 64 Query: 171 WIYFG---DEVIVPKSIKRAKGNQSSKKSKKDKK 201 ++ DE+ V +I + Q + K+ K Sbjct: 65 YLLKPAEIDELSVKTNILEKQQQQILLREKQRNK 98 >gi|320528169|ref|ZP_08029334.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131517|gb|EFW24082.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 137 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 47/108 (43%), Gaps = 5/108 (4%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + I+ + + +++ +R ++ TQK+MA N +++ +ENG+ I + Sbjct: 1 MKKTIQDSMRLMTYQMRKLRINHHMTQKQMADILNVSAQSISAYENGVIRPDIEIIMKYA 60 Query: 81 NEYEISFDWI----YDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRK 123 + +++ D++ G + D + + A ++ IR+ Sbjct: 61 DYFKVDMDYLTGVNLYGPINDVFPTQTEAQMFMAYRRRPAWMRKVIRE 108 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +++ +R + M+Q + +L + ++S YE G P+I+ K K +D++ Sbjct: 12 MTYQMRKLRINHHMTQKQMADILNVSAQSISAYENGVIRPDIEIIMKYADYFKVDMDYL 70 >gi|326390746|ref|ZP_08212299.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993140|gb|EGD51579.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 160 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK++RK TQK++A+ + AV +EN + + + + +S D++ Sbjct: 2 LGKRIKELRKKKGLTQKDLALYLGVSDRAVGYYENEQRTPPPDILQKIADFFNVSVDYLL 61 Query: 92 DGEVIDRRYEDVTNK 106 ++ + + Sbjct: 62 GRTDNPSEIKNFSKE 76 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 10/100 (10%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+K +RK KG++Q + LG+ + + YE + P +KI +D++ Sbjct: 1 MLGKRIKELRKKKGLTQKDLALYLGVSDRAVGYYENEQRTPPPDILQKIADFFNVSVDYL 60 Query: 173 YFGDE----------VIVPKSIKRAKGNQSSKKSKKDKKS 202 + I I K ++KDKK Sbjct: 61 LGRTDNPSEIKNFSKEISKNPIINQPQEWQPKLTEKDKKD 100 >gi|260663657|ref|ZP_05864546.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260551883|gb|EEX24998.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 115 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N +Q + ++ V +E S Y L +E+S D++ Sbjct: 14 IGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTEPSSTYVTKLAELFEVSTDYLL 73 Query: 92 DGEVIDRRYEDVT 104 D E R+ V Sbjct: 74 DHERSIRQPVTVD 86 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IGAR+K +RK + +SQ GK +G+ +T++ +E RT P K+ ++ + D++ Sbjct: 13 MIGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTEPSSTYVTKLAELFEVSTDYL 72 Query: 173 YFGD-EVIVPKSIKRAKGN 190 + + P ++ A N Sbjct: 73 LDHERSIRQPVTVDLADEN 91 >gi|170754897|ref|YP_001780428.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169120109|gb|ACA43945.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 201 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +IK R + +Q+++A ++ +ENG I + L + +S D + Sbjct: 2 DISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDIL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ + + E T + Sbjct: 62 VKGDLEEMKEEIKTEDIK 79 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R D +SQ + + + + T+SN+E G+ P+I + + LD Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + IK + ++ Sbjct: 61 LVKGDLEEMKEEIKTEDIKRFNR 83 >gi|168209895|ref|ZP_02635520.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] gi|170711951|gb|EDT24133.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] Length = 268 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ IRK +Q+++A AV+ +E+G + + L Y ++ D++ Sbjct: 2 KLAEKLQLIRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYL 61 Query: 91 YD 92 Sbjct: 62 VK 63 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 39/92 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L+ IRK +G+SQ + + LG+ +S +E G+++P++ + ++ +D+ Sbjct: 1 MKLAEKLQLIRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + K + K + Sbjct: 61 LVKETYEFEGSQEKEISNTGKQYGENLENKET 92 >gi|116618965|ref|YP_819336.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097812|gb|ABJ62963.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 203 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K+ R A NKTQ++MA + V+ +EN S+ + L + S D Sbjct: 2 ELGQKLKECRLALNKTQQQMATELHVTRQTVSHWENNDTYPSLDMLVTLSDYLGFSLDTT 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 E D Y Sbjct: 62 LKEEGTDMIDSINKELTAGKRYKKIVW 88 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +LK R +Q + L + T+S++E T P + + LD Sbjct: 1 MELGQKLKECRLALNKTQQQMATELHVTRQTVSHWENNDTYPSLDMLVTLSDYLGFSLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + SI N+ K+ KK Sbjct: 61 TLKEEGTDMIDSI-----NKELTAGKRYKK 85 >gi|325840453|ref|ZP_08167052.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490320|gb|EGC92649.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 120 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ R + TQ E+A N + +N +E+G I+ L N + +S +++ Sbjct: 4 IGSKIRVERNKHGWTQVELANKMNLSKQTINNWEHGRRIPDIQTLKELSNLFNVSLEYLV 63 Query: 92 DGEVIDRRYEDVTN 105 + N Sbjct: 64 GESSPAVPENHLVN 77 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 39/73 (53%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG++++ R G +Q+E + + T++N+E GR IP+I+ +++ + L+ Sbjct: 1 MNGIGSKIRVERNKHGWTQVELANKMNLSKQTINNWEHGRRIPDIQTLKELSNLFNVSLE 60 Query: 171 WIYFGDEVIVPKS 183 ++ VP++ Sbjct: 61 YLVGESSPAVPEN 73 >gi|297560527|ref|YP_003679501.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844975|gb|ADH66995.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 202 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 33/88 (37%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ Q VG R++ +RK T +++ S ++ E+G ++ L Sbjct: 1 MEHDLDQALDAVGPRLRALRKQKETTLTDLSAATGISVSTLSRLESGSRRPTLELLFPLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKR 108 Y ++ D + D + R Sbjct: 61 RAYGVTLDELVDAPPTGDPRIHLRPVNR 88 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++RK K + + G+ STLS E G P ++ + + LD + Sbjct: 11 AVGPRLRALRKQKETTLTDLSAATGISVSTLSRLESGSRRPTLELLFPLARAYGVTLDEL 70 Query: 173 Y 173 Sbjct: 71 V 71 >gi|323492807|ref|ZP_08097949.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis LMG 20546] gi|323312878|gb|EGA66000.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis LMG 20546] Length = 185 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++G I +RK + +Q+E+A A SA++ ENG S S+ + N + +S Sbjct: 3 NQEIGKNIVQLRKQHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLS 62 Query: 89 WIYDGEVI 96 + E Sbjct: 63 EFFTFEKP 70 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 35/75 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + +RK G+SQ E + G+ +S +S+ E G+ P + +KI V Sbjct: 1 MNNQEIGKNIVQLRKQHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLS 60 Query: 169 LDWIYFGDEVIVPKS 183 L + ++ + Sbjct: 61 LSEFFTFEKPQSDEV 75 >gi|39998413|ref|NP_954364.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39985360|gb|AAR36714.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298507358|gb|ADI86081.1| helix-turn-helix transcriptional regulator, LexA-related [Geobacter sulfurreducens KN400] Length = 212 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R+A TQK A ++ ++ E G S + L Y ++ W+ Sbjct: 12 LGGRIRKLRQARGMTQKAFADSLGIVQGFLSSIERGRKVPSDTLVIALCRTYGVNVTWLL 71 Query: 92 DGEVIDRRYED 102 G+ D Sbjct: 72 QGKGAMNAPPD 82 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ +R+ +GM+Q F LG+ LS+ E+GR +P + + ++ W+ G Sbjct: 16 IRKLRQARGMTQKAFADSLGIVQGFLSSIERGRKVPSDTLVIALCRTYGVNVTWLLQGK 74 >gi|116494736|ref|YP_806470.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|239631670|ref|ZP_04674701.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066285|ref|YP_003788308.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116104886|gb|ABJ70028.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|239526135|gb|EEQ65136.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438692|gb|ADK18458.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 185 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ +RK +Q ++A A++ +ENG+ + LR+ +S+ + Sbjct: 2 FGERLTQLRKQKGLSQNDLAEAIGISRQAISKYENGLAEPDLDKIAKLRDILGVSYADLL 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 E + + + + Sbjct: 62 GKEPKQQITSNNVSSASI 79 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL +RK KG+SQ + + +G+ +S YE G P++ K++ + + Sbjct: 1 MFGERLTQLRKQKGLSQNDLAEAIGISRQAISKYENGLAEPDLDKIAKLRDILGVSYADL 60 Query: 173 YFGD 176 + Sbjct: 61 LGKE 64 >gi|228929407|ref|ZP_04092428.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229198488|ref|ZP_04325192.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|228584991|gb|EEK43105.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|228830195|gb|EEM75811.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 194 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 42/110 (38%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + ++G+ I++IR+ T ++ G + ++ EN S SI + Sbjct: 4 IVVYKKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETI 63 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 N + ++ + + +K R++ + + G+ Sbjct: 64 SNFLNVPLPYLLLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 113 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 KK LD IG+ ++ IR+ +G++ + + G+ +S E +T P I I Sbjct: 8 KKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFL 67 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 L ++ + + K + Sbjct: 68 NVPLPYLLLEQKDRLKVVKKVER 90 >gi|319947404|ref|ZP_08021636.1| DNA-binding protein [Streptococcus australis ATCC 700641] gi|319746344|gb|EFV98605.1| DNA-binding protein [Streptococcus australis ATCC 700641] Length = 197 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG +I+ RK N +Q E+A +++ +E G I+ L L +E+S D + Sbjct: 2 QVGKQIQHYRKEKNLSQDELAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDKL 61 Query: 91 YDGEVIDRRY 100 G++ + Sbjct: 62 VKGDLETMKQ 71 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 45/83 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ RK+K +SQ E +++ + ++SN+E+G T P+I+ + +V + LD Sbjct: 1 MQVGKQIQHYRKEKNLSQDELAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDK 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + I + + K Sbjct: 61 LVKGDLETMKQIIHDQEFMRYQK 83 >gi|29833680|ref|NP_828314.1| regulatory protein [Streptomyces avermitilis MA-4680] gi|29610804|dbj|BAC74849.1| putative regulatory protein [Streptomyces avermitilis MA-4680] Length = 206 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R++ IRK T ++ S ++ E+G+ S+ L + +++ D + Sbjct: 25 EVGPRLRRIRKERGATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDEL 84 Query: 91 YDGEVIDRRYED 102 + Sbjct: 85 VGAPPVSDPRVR 96 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ IRK++G + + G+ STLS E G P ++ I + + LD + Sbjct: 30 LRRIRKERGATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDELVGAPP 89 Query: 178 VIVPKS 183 V P+ Sbjct: 90 VSDPRV 95 >gi|324992649|gb|EGC24570.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK405] gi|324995822|gb|EGC27733.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK678] gi|327460052|gb|EGF06391.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1] gi|327488642|gb|EGF20442.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 167 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 E + V ++ D Y Sbjct: 62 LLEEGDKPEIKPVLSEDEKDRYYKE 86 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDY 60 Query: 172 IYF--GDEVIVPKSIKRAKGNQSSKKSK 197 + GD+ + + + ++ K+ K Sbjct: 61 LLLEEGDKPEIKPVLSEDEKDRYYKEVK 88 >gi|154496299|ref|ZP_02034995.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] gi|150274382|gb|EDN01459.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] Length = 155 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%) Query: 13 SLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 + + V R+K R+ + TQKE+A ++ ++ +ENG S Sbjct: 34 KTASEAFKELTNVMKRKIAVSRRLKKAREESGLTQKEVADKLELKKTTLSGYENGKSEPS 93 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 + + L N Y +S D++ + + Sbjct: 94 METLVQLANLYGVSLDYLMCRTDTRIEFNEEE 125 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 45/89 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ RLK R++ G++Q E L + +TLS YE G++ P ++ ++ + LD+ Sbjct: 51 IAVSRRLKKAREESGLTQKEVADKLELKKTTLSGYENGKSEPSMETLVQLANLYGVSLDY 110 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + + + + K + ++ +++ Sbjct: 111 LMCRTDTRIEFNEEEYKVIDADRQQLRER 139 >gi|326331894|ref|ZP_08198181.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325950391|gb|EGD42444.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 209 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R+K +R+ + T +A S ++ E G+ ++ L L Y ++ D + Sbjct: 12 VGPRLKQLRQRRDITLSHLAEETGISTSTLSRLEAGLRRPTLEQLLPLARAYGVTLDDLV 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 N + + L R+ G+ Sbjct: 72 ---DAPPTGNPRINLRPIPCADGSMILPLTRRPGGIQ 105 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 D + + LD A+G RLK +R+ + ++ + G+ STLS E G P ++ Sbjct: 1 MDDSTDRTLD--AVGPRLKQLRQRRDITLSHLAEETGISTSTLSRLEAGLRRPTLEQLLP 58 Query: 161 IKQVTKKHLDWIY 173 + + LD + Sbjct: 59 LARAYGVTLDDLV 71 >gi|259503754|ref|ZP_05746656.1| DNA-binding protein [Lactobacillus antri DSM 16041] gi|259168270|gb|EEW52765.1| DNA-binding protein [Lactobacillus antri DSM 16041] Length = 112 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ R+ TQ +A N A++ +E G I + + N ++I+ D + Sbjct: 3 LGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDSLI 62 Query: 92 DGEV 95 G+ Sbjct: 63 KGDD 66 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+K R+ + +Q + L + +S +E G P+I +I + LD Sbjct: 1 MTLGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDS 60 Query: 172 IYFGDEVIVPKSI 184 + GD+ + + Sbjct: 61 LIKGDDSLKKSIV 73 >gi|297587580|ref|ZP_06946224.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] gi|297574269|gb|EFH92989.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] Length = 327 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK NN TQ+E+A +V+ +E G I + L + + + D++ Sbjct: 3 LSDKIILLRKKNNLTQEELAEKLGVSRQSVSKWEMGNSIPDINKIIQLSDVFGVKTDYLL 62 Query: 92 DGEVIDRRYEDVT 104 E+ D Y D T Sbjct: 63 KDEIDDIEYSDDT 75 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ +RK ++Q E + LG+ ++S +E G +IP+I ++ V D+ Sbjct: 1 MILSDKIILLRKKNNLTQEELAEKLGVSRQSVSKWEMGNSIPDINKIIQLSDVFGVKTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + DE+ + +KK+ Sbjct: 61 LLK-DEIDDIEYSDDTVEELETKKT 84 >gi|91785547|ref|YP_560753.1| hypothetical protein Bxe_A0231 [Burkholderia xenovorans LB400] gi|91689501|gb|ABE32701.1| Hypothetical protein Bxe_A0231 [Burkholderia xenovorans LB400] Length = 161 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 52/145 (35%), Gaps = 5/145 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + RI+ R+ + + ++ A ++ E + S++ + N ++++ Sbjct: 15 RRLAERIRCARELFDLSLHALSEKAQVDRKSLRSIEAAEFNPSVKTLERIANAFDMTIAE 74 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 ++ + + +K +R+ K + + + M + +S E G Sbjct: 75 LFGASRGSIPSSLLDAPTLV-----ALNVKRLRRAKDWNAADLAERTLMKAAYVSLLETG 129 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYF 174 + ++ ++ + + + Sbjct: 130 KCGCTLRTLLRLAAGFQVDVVQLLT 154 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R+ +S + + +L + E P +K +I + ++ Sbjct: 19 ERIRCARELFDLSLHALSEKAQVDRKSLRSIEAAEFNPSVKTLERIANAFDMTIAELFGA 78 Query: 176 DEVIVPKSIKRA 187 +P S+ A Sbjct: 79 SRGSIPSSLLDA 90 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V +K +R+A + ++A + V+L E G C ++R L L +++ + Sbjct: 94 VALNVKRLRRAKDWNAADLAERTLMKAAYVSLLETGKCGCTLRTLLRLAAGFQVDVVQLL 153 Query: 92 DGEVI 96 Sbjct: 154 THPAP 158 >gi|56963615|ref|YP_175346.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909858|dbj|BAD64385.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 106 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY-D 92 R+K +RK TQ+++ N + +++ +ENG + L + + +S D++ Sbjct: 6 ERLKTLRKERQLTQEQLGELINVTKVSISGYENGNRTPDTDTLRRLADVFGVSTDYLLGR 65 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + + + + + L IR Sbjct: 66 SKEKNGSFFYDNELTHKEAQLLREHLAFIRFQAN 99 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 10/99 (10%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI-- 172 RLK++RK++ ++Q + G+L+ + ++S YE G P+ R++ V D++ Sbjct: 5 PERLKTLRKERQLTQEQLGELINVTKVSISGYENGNRTPDTDTLRRLADVFGVSTDYLLG 64 Query: 173 --------YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 +F D + K + + + + + + +KK S Sbjct: 65 RSKEKNGSFFYDNELTHKEAQLLREHLAFIRFQANKKES 103 >gi|325663518|ref|ZP_08151928.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470417|gb|EGC73648.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium 4_1_37FAA] Length = 296 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK +Q+E+AI N + V+ +EN + + L IS + Sbjct: 2 LGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAELL 61 Query: 92 DGEVID 97 + Sbjct: 62 GTDEQP 67 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 7/95 (7%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++K RK+K MSQ E L + T+S +E ++P+ + ++ +V + + Sbjct: 1 MLGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAEL 60 Query: 173 YFGDEVIVPKS-------IKRAKGNQSSKKSKKDK 200 DE +S I+ A+ N+ K +++ Sbjct: 61 LGTDEQPHSESLSAETLAIELARLNEELAKQVQER 95 >gi|299536270|ref|ZP_07049583.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1] gi|298728256|gb|EFI68818.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1] Length = 182 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG +IK +RK N +Q ++A N +S ++ ENG + S+ + +++ W Sbjct: 5 EVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVPMAWF 64 Query: 91 YDGEVID 97 + D Sbjct: 65 VIQDQFD 71 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 38/84 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++K +RK MSQ + + + S +S E G+ P + KI ++ Sbjct: 1 MNLLEVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 + W D+ + + + +++ Sbjct: 61 MAWFVIQDQFDGISIVSKKERHET 84 >gi|295102948|emb|CBL00492.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 112 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 2/91 (2%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 L + LK + + E K +G +K R TQ+ +A AV Sbjct: 21 LLTLIVRALLKYIHSKD--VRQEKSVVRKSLGEALKAHRTQCKMTQEFVAETIGVSRQAV 78 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 + +ENG S L Y +S + + Sbjct: 79 SKWENGTSDPSTSNLFALAKLYGVSVEELLK 109 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 34/79 (43%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 +DV +K + ++G LK+ R M+Q + +G+ +S +E G + P Sbjct: 34 HSKDVRQEKSVVRKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNL 93 Query: 159 RKIKQVTKKHLDWIYFGDE 177 + ++ ++ + E Sbjct: 94 FALAKLYGVSVEELLKEVE 112 >gi|229016335|ref|ZP_04173281.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273] gi|229022576|ref|ZP_04179104.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272] gi|228738725|gb|EEL89193.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272] gi|228744982|gb|EEL95038.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273] Length = 149 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIYVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 34/77 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIYVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I +K Sbjct: 61 LLRSDEELTQKVIADSK 77 >gi|329666628|gb|AEB92576.1| putative transcriptional regulator, Xre family [Lactobacillus johnsonii DPC 6026] Length = 288 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I ++RK NN +Q+ +A N AV+ +E+ I + L + ++ D++ Sbjct: 3 LGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSLSELFGVTTDYLL 62 Query: 92 DGEVIDRRYED 102 + Sbjct: 63 KSGAPSFEIKT 73 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 30/63 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +RK +SQ + + + +S +E ++IP+I+ + ++ D+ Sbjct: 1 MRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSLSELFGVTTDY 60 Query: 172 IYF 174 + Sbjct: 61 LLK 63 >gi|302669238|ref|YP_003832388.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396902|gb|ADL35806.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 359 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK++RK + +TQ E+A AV+ +E + + N + +S D ++ Sbjct: 5 LGDKIKELRKRDRRTQDELATALGITNQAVSRWEANKAYPDMEMIPAIANYFHVSIDELF 64 Query: 92 DGEVIDRR 99 Sbjct: 65 GYNNDRES 72 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K +RK +Q E LG+ N +S +E + P+++ I +D Sbjct: 3 IMLGDKIKELRKRDRRTQDELATALGITNQAVSRWEANKAYPDMEMIPAIANYFHVSIDE 62 Query: 172 IYFGD---EVIVPKSIKRAK 188 ++ + E + + I++A Sbjct: 63 LFGYNNDRESTLSRYIEKAN 82 >gi|293570008|ref|ZP_06681088.1| transcriptional regulator, putative [Enterococcus faecium E1071] gi|291587380|gb|EFF19264.1| transcriptional regulator, putative [Enterococcus faecium E1071] Length = 154 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 34/68 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++RK NN TQ+E+++ ++ +E G + L + ++++ ++ DG Sbjct: 3 NRLRNLRKKNNLTQEELSLQLKVSRQTISNWERGFSQPDLENLHLLASFFKVTVSYLIDG 62 Query: 94 EVIDRRYE 101 + I Sbjct: 63 DTIPDASP 70 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 39/79 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+++RK ++Q E L + T+SN+E+G + P+++ + K + ++ Sbjct: 1 MENRLRNLRKKNNLTQEELSLQLKVSRQTISNWERGFSQPDLENLHLLASFFKVTVSYLI 60 Query: 174 FGDEVIVPKSIKRAKGNQS 192 GD + I AK Q Sbjct: 61 DGDTIPDASPIYEAKQPQP 79 >gi|228986720|ref|ZP_04146850.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773051|gb|EEM21487.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 262 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIK 185 + +++ Sbjct: 61 LLKETAEKSNENVD 74 >gi|154500021|ref|ZP_02038059.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC 29799] gi|150271619|gb|EDM98876.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC 29799] Length = 296 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK RKA +Q+EMA+ N + V+ +ENG+ + + +S + Sbjct: 4 IDKNIKHFRKAKGMSQEEMAVKLNVVRQTVSKWENGLSVPDADVLIRMAELLNVSVSQLL 63 Query: 92 DGEVIDRRYEDVTNK 106 E D+ +D++ K Sbjct: 64 GIEAEDKSDKDLSEK 78 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K RK KGMSQ E L + T+S +E G ++P+ ++ ++ + + Sbjct: 6 KNIKHFRKAKGMSQEEMAVKLNVVRQTVSKWENGLSVPDADVLIRMAELLNVSVSQLLGI 65 Query: 176 D-EVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + E K + + + +KK++K Sbjct: 66 EAEDKSDKDLSEKLSKLNEQLAKKNQKER 94 >gi|317484279|ref|ZP_07943203.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924460|gb|EFV45622.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 272 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 30/73 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ RKA +Q+++A +V +E G + + + + + +S D++ Sbjct: 7 NIGGKIQARRKAMGLSQEDLAQLTGVSRQSVTKWETGQSAPDLDRLVEVSDVLGVSLDFL 66 Query: 91 YDGEVIDRRYEDV 103 Sbjct: 67 LREPQQVSSPPSF 79 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 32/56 (57%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ RK G+SQ + +L G+ +++ +E G++ P++ ++ V LD++ Sbjct: 12 IQARRKAMGLSQEDLAQLTGVSRQSVTKWETGQSAPDLDRLVEVSDVLGVSLDFLL 67 >gi|293380865|ref|ZP_06626901.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1] gi|290922538|gb|EFD99504.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1] Length = 118 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G RIK R+ TQ +A N +V+ +E G I + + ++IS D Sbjct: 5 QAIGQRIKSYRENAKLTQDNLAQKLNVSRQSVSKWEKGGSLPDIDRLVTMSELFDISLDK 64 Query: 90 IYDGEVIDRRY 100 + G+ + + Sbjct: 65 LILGKDKNVQK 75 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 41/77 (53%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D AIG R+KS R++ ++Q + L + ++S +E+G ++P+I + ++ Sbjct: 1 MIDIQAIGQRIKSYRENAKLTQDNLAQKLNVSRQSVSKWEKGGSLPDIDRLVTMSELFDI 60 Query: 168 HLDWIYFGDEVIVPKSI 184 LD + G + V K + Sbjct: 61 SLDKLILGKDKNVQKVV 77 >gi|256377491|ref|YP_003101151.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921794|gb|ACU37305.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 192 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 31/78 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG R++ +R + T ++A +S ++ E+G S+ L + + + D + Sbjct: 8 QVGERLRALRASRGATLADLAEVTGISKSTLSRLESGQRRPSLELLLPIARAHRVPLDEL 67 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + +R Sbjct: 68 VGAPPVGDPRVRLAPVRR 85 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+++R +G + + ++ G+ STLS E G+ P ++ I + + LD + Sbjct: 11 ERLRALRASRGATLADLAEVTGISKSTLSRLESGQRRPSLELLLPIARAHRVPLDELV 68 >gi|256784548|ref|ZP_05522979.1| hypothetical protein SlivT_08668 [Streptomyces lividans TK24] gi|289768432|ref|ZP_06527810.1| XRE family transcriptional regulator [Streptomyces lividans TK24] gi|289698631|gb|EFD66060.1| XRE family transcriptional regulator [Streptomyces lividans TK24] Length = 290 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 47/141 (33%), Gaps = 19/141 (13%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+ ++ +R+ + Q+++ + V +E+G + + D ++ Sbjct: 8 GSLVRAVRRRRDMHQRQLGELVGVSGATVARWESGKDFPKGEKLPAIATALDEPLDELFP 67 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 E L+ +R D G+S E +++G +SN E GR Sbjct: 68 HEGPPD-------------------LQLLRCDAGLSVAEATEIIGASRGPVSNAESGRRR 108 Query: 153 PEIKPARKIKQVTKKHLDWIY 173 + + + + Sbjct: 109 LNASYVKPLAAAYGVTEEELL 129 >gi|319936228|ref|ZP_08010648.1| HTH domain-containing protein [Coprobacillus sp. 29_1] gi|319808802|gb|EFW05335.1| HTH domain-containing protein [Coprobacillus sp. 29_1] Length = 151 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Query: 25 IRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + Q +D+ G +I+ +R TQ+E+A N A++ +E + + + Sbjct: 1 MNQKQRDITTGKQIRHLRTQAGMTQEELARELNVTRQALSNWERDVNEPDLNMLKKICFL 60 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + D G + + K++ + Y + L Sbjct: 61 FGVYMDDFAKGVITKMETYEKKEKQQFNRYDMAIGL 96 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N+K+ D G +++ +R GM+Q E + L + LSN+E+ P++ +KI + Sbjct: 2 NQKQRD-ITTGKQIRHLRTQAGMTQEELARELNVTRQALSNWERDVNEPDLNMLKKICFL 60 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGN 190 ++D G + K+ K Sbjct: 61 FGVYMDDFAKGVITKMETYEKKEKQQ 86 >gi|323485634|ref|ZP_08090973.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323401045|gb|EGA93404.1| transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 289 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +RK N TQ++ A AV+ +E+G + L + ++ S D + G Sbjct: 5 ENLQYLRKKQNLTQEQFAEQMEVSRQAVSKWESGQSYPEMEKLLQICEQFGCSMDSLIKG 64 Query: 94 EVIDRRYEDVTNKKR 108 +V + ED T R Sbjct: 65 DVTEAAKEDSTGYNR 79 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 35/72 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +RK + ++Q +F + + + +S +E G++ PE++ +I + +D Sbjct: 1 MSFSENLQYLRKKQNLTQEQFAEQMEVSRQAVSKWESGQSYPEMEKLLQICEQFGCSMDS 60 Query: 172 IYFGDEVIVPKS 183 + GD K Sbjct: 61 LIKGDVTEAAKE 72 >gi|297560394|ref|YP_003679368.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844842|gb|ADH66862.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 490 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 2/109 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +R+A T ++ + S ++L ENG + L + +S + + Sbjct: 21 FGQRLRHLRRARGLTLSDLGERVGRAPSQLSLLENGKREPKLSLLTSLASALGVSVEELL 80 Query: 92 DGEVIDRRYEDVTNKK--RLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + RR + + + D L +R K + ++G+ Sbjct: 81 SKQPPSRRAQLEIAVEEAQRDTLYQDLNLPHLRIGKRVPNDVLEHIVGL 129 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 LD G RL+ +R+ +G++ + G+ +G S LS E G+ P++ + Sbjct: 15 DLDLVTFGQRLRHLRRARGLTLSDLGERVGRAPSQLSLLENGKREPKLSLLTSLASALGV 74 Query: 168 HLDWIY 173 ++ + Sbjct: 75 SVEELL 80 >gi|229080834|ref|ZP_04213352.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] gi|228702568|gb|EEL55036.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] Length = 262 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A + AV+ +ENG + + N +E+S D++ Sbjct: 3 FGEKLFKLRKKKGLSQEALAEKLSTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK KG+SQ + L +S +E G+ PE + I V + LD+ Sbjct: 1 MGFGEKLFKLRKKKGLSQEALAEKLSTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIK 185 + +++ Sbjct: 61 LLKETAEQSNENVD 74 >gi|197303443|ref|ZP_03168482.1| hypothetical protein RUMLAC_02165 [Ruminococcus lactaris ATCC 29176] gi|197297441|gb|EDY32002.1| hypothetical protein RUMLAC_02165 [Ruminococcus lactaris ATCC 29176] Length = 368 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ ++ R TQ+E+A ++AV+ +E+G+ I L + +S D + Sbjct: 5 NIAKQLLAARHEKKITQEELASYVGVSKAAVSKWESGVSFPDITLLPKLATYFNVSIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 E R + +L Sbjct: 65 IGYEPQLTREQIKELYSQLKNIFANE 90 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +L + R +K ++Q E +G+ + +S +E G + P+I K+ Sbjct: 1 MAEINIAKQLLAARHEKKITQEELASYVGVSKAAVSKWESGVSFPDITLLPKLATYFNVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSS 193 +D + + + + IK + Sbjct: 61 IDELIGYEPQLTREQIKELYSQLKN 85 >gi|239627441|ref|ZP_04670472.1| BcrR [Clostridiales bacterium 1_7_47_FAA] gi|239517587|gb|EEQ57453.1| BcrR [Clostridiales bacterium 1_7_47FAA] Length = 204 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 37/88 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +R N TQ+++A +A++ +E G +I + + I+ D + Sbjct: 2 EFNEKLRQLRIGKNLTQEQLAEQLYVSRTAISKWEGGKGYPNIESLKCISKFFSITIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + E N Y I + + Sbjct: 62 LSGEELITLAETENNANVKRIYDIISGI 89 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +R K ++Q + + L + + +S +E G+ P I+ + I + +D Sbjct: 1 MEFNEKLRQLRIGKNLTQEQLAEQLYVSRTAISKWEGGKGYPNIESLKCISKFFSITIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + G+E+I ++ + N + K+ Sbjct: 61 LLSGEELI---TLAETENNANVKR 81 >gi|260892597|ref|YP_003238694.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864738|gb|ACX51844.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 151 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 25/72 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK R TQ E+A N + +E G L + E+S D++ Sbjct: 8 DLGLRIKFARLRKGLTQAELAQKLNVHPETLGKYERGTNRPDAETLRKLADILEVSTDFL 67 Query: 91 YDGEVIDRRYED 102 Sbjct: 68 VGRTNDPSPIPS 79 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY--FG 175 +K R KG++Q E + L + TL YE+G P+ + RK+ + + D++ Sbjct: 13 IKFARLRKGLTQAELAQKLNVHPETLGKYERGTNRPDAETLRKLADILEVSTDFLVGRTN 72 Query: 176 DEVIVPKSIK 185 D +P S+ Sbjct: 73 DPSPIPSSLD 82 >gi|222529019|ref|YP_002572901.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455866|gb|ACM60128.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 321 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ N TQ E+A + ++ +E G+ I + N + +S D++ G Sbjct: 51 RLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIANYFNVSSDYLL-GM 109 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + + + + + LK+ Sbjct: 110 TPIKKRDSLNSIEEIIKEKKVKELKNF 136 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 47/115 (40%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 + ++ + + ++ RLK +R++ ++Q E + LG+ +TL Sbjct: 18 NKNVSFLLIECYNVLKRSIIEVIDLIEENIFAMRLKELREEANLTQNELAEKLGIGRATL 77 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 SNYE G P+I +KI D++ + S+ + KK K+ Sbjct: 78 SNYELGVRKPDIDTLQKIANYFNVSSDYLLGMTPIKKRDSLNSIEEIIKEKKVKE 132 >gi|330718467|ref|ZP_08313067.1| XRE family DNA-binding protein [Leuconostoc fallax KCTC 3537] Length = 249 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK+ R + TQ+++A N S V+ +E G + + + + +EIS D + Sbjct: 2 NIGDRIKEQRLYKSWTQEQLAHFLNVSRSTVSSWEVGRNYPDLETIVAISDLFEISLDKL 61 Query: 91 YDGEVIDRRYEDVT 104 + I R Sbjct: 62 LREDSIMVRETSKK 75 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K R K +Q + L + ST+S++E GR P+++ I + + LD Sbjct: 1 MNIGDRIKEQRLYKSWTQEQLAHFLNVSRSTVSSWEVGRNYPDLETIVAISDLFEISLDK 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + D ++V ++ K+AK + K Sbjct: 61 LLREDSIMVRETSKKAKHFKLYK 83 >gi|325263097|ref|ZP_08129832.1| DNA-binding protein [Clostridium sp. D5] gi|324031490|gb|EGB92770.1| DNA-binding protein [Clostridium sp. D5] Length = 157 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 37/68 (54%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I +RKANN TQ+E+A N +++ +E+G + + L + ++++ D++ Sbjct: 2 EISEKILQLRKANNLTQEELAEKLNVSRQSISKWESGQTIPELEKLISLSSVFQVTTDYL 61 Query: 91 YDGEVIDR 98 +D Sbjct: 62 LKPSELDE 69 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ +RK ++Q E + L + ++S +E G+TIPE++ + V + D+ Sbjct: 1 MEISEKILQLRKANNLTQEELAEKLNVSRQSISKWESGQTIPELEKLISLSSVFQVTTDY 60 Query: 172 IYFG---DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DE+ + I K + K+SKK K S Sbjct: 61 LLKPSELDELSIKTEILEKKQQELEKESKKRKSSQ 95 >gi|259502231|ref|ZP_05745133.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169849|gb|EEW54344.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 126 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 33/70 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ ++R+A +Q+++A + AV+ +ENG I + + + ++S D + G+ Sbjct: 7 QLANLRQAAGLSQEQLADQLHVSRQAVSKWENGSTLPDIDKIVQIADILQVSLDELVLGK 66 Query: 95 VIDRRYEDVT 104 + Sbjct: 67 APTVSQSKLD 76 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +L ++R+ G+SQ + L + +S +E G T+P+I +I + + LD Sbjct: 1 MNKFQHQLANLRQAAGLSQEQLADQLHVSRQAVSKWENGSTLPDIDKIVQIADILQVSLD 60 Query: 171 WIYFGDEVIVPKS----IKRAKGNQSSKKSKKDKKSSN 204 + G V +S + A QS +++ + N Sbjct: 61 ELVLGKAPTVSQSKLDRLIDAHLQQSQQENHWRYREIN 98 >gi|257877218|ref|ZP_05656871.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257811384|gb|EEV40204.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 198 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 42/86 (48%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D + ++K R+ +SQ + L + T+SN+E ++ P++ + + L Sbjct: 6 DKMNLSKQIKKHRERLSLSQEGLAEKLYVSRQTISNWENEKSYPDVHNLLLLSVLFDVSL 65 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKK 195 D + GD + ++I++ + ++ +K Sbjct: 66 DELVKGDVEQMKETIEKTEMDRYTKM 91 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 34/88 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A ++ +EN + L L +++S D + Sbjct: 9 NLSKQIKKHRERLSLSQEGLAEKLYVSRQTISNWENEKSYPDVHNLLLLSVLFDVSLDEL 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G+V + + + + Sbjct: 69 VKGDVEQMKETIEKTEMDRYTKMMLLFI 96 >gi|325261368|ref|ZP_08128106.1| DNA-binding protein [Clostridium sp. D5] gi|324032822|gb|EGB94099.1| DNA-binding protein [Clostridium sp. D5] Length = 182 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ RK + +Q+E+A AV+ +E + L E+S D++ Sbjct: 3 LGEKIQKHRKEKSMSQEELAALLGVSRQAVSKWELNDTIPDTENVIQLGKILEVSLDYLL 62 Query: 92 DGEVIDRRYEDVT 104 E T Sbjct: 63 KPERETPDEGGDT 75 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ RK+K MSQ E LLG+ +S +E TIP+ + ++ ++ + LD+ Sbjct: 1 MTLGEKIQKHRKEKSMSQEELAALLGVSRQAVSKWELNDTIPDTENVIQLGKILEVSLDY 60 Query: 172 IYFGDEVIVPK 182 + + + Sbjct: 61 LLKPERETPDE 71 >gi|323693566|ref|ZP_08107769.1| DNA-binding protein [Clostridium symbiosum WAL-14673] gi|323502374|gb|EGB18233.1| DNA-binding protein [Clostridium symbiosum WAL-14673] Length = 250 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ ++RK +Q+++ V+ +E G + + + L + +EIS D + Sbjct: 5 EQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVDRLIGI 64 Query: 94 EVIDRRYE 101 E Sbjct: 65 EERKDTAP 72 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L +RK +G SQ + G +G+ T+S +E G T PE+ ++ + + +D Sbjct: 1 MEFREQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVDR 60 Query: 172 IYFGDE--VIVPKSIKRAKGNQSSKKSKK 198 + +E P I N K Sbjct: 61 LIGIEERKDTAPVYIHETGWNYEYKSKTT 89 >gi|323485059|ref|ZP_08090412.1| DNA-binding protein [Clostridium symbiosum WAL-14163] gi|323401615|gb|EGA93960.1| DNA-binding protein [Clostridium symbiosum WAL-14163] Length = 250 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ ++RK +Q+++ V+ +E G + + + L + +EIS D + Sbjct: 5 EQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVDRLIGI 64 Query: 94 EVIDRRYE 101 E Sbjct: 65 EERKDTAP 72 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L +RK +G SQ + G +G+ T+S +E G T PE+ ++ + + +D Sbjct: 1 MEFREQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVDR 60 Query: 172 IYFGDE--VIVPKSIKRAKGNQSSKKSKK 198 + +E P I N K Sbjct: 61 LIGIEERKDTAPVYIHETGWNYEYKSKTT 89 >gi|304440440|ref|ZP_07400329.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371192|gb|EFM24809.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 132 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 47/108 (43%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + ++G+ IK +R+ NN +QKE+A N S ++ +E+ + S + + + + Sbjct: 3 EAIRMISNLGSNIKYLREKNNLSQKELAKILNISNSTLSQYESNVRVPSDDIKILIADYF 62 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 +S D++ + T L+ R ++ ++ + Sbjct: 63 NVSLDYLLGRSSNPHKNNKKTKVDELEEDFPEGISVLYRANQKLTPEQ 110 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 10/85 (11%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + +K +R+ +SQ E K+L + NSTLS YE +P I LD++ Sbjct: 13 SNIKYLREKNNLSQKELAKILNISNSTLSQYESNVRVPSDDIKILIADYFNVSLDYLLG- 71 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 + + ++++KK+K D+ Sbjct: 72 ---------RSSNPHKNNKKTKVDE 87 >gi|262283651|ref|ZP_06061416.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260708|gb|EEY79409.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 167 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 38/83 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 + + V ++ D Y Sbjct: 62 LLEDSDKPEIKPVLSEDEKDRYY 84 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E IK + ++ KS Sbjct: 61 LLL--EDSDKPEIKPVLSEDEKDRYYQEVKS 89 >gi|229141099|ref|ZP_04269641.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|228642377|gb|EEK98666.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] Length = 194 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 42/110 (38%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + ++G+ I++IR+ T ++ G + ++ EN S SI + Sbjct: 4 IVVYKKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETI 63 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 N + ++ + + +K R++ + + G+ Sbjct: 64 SNFLNVPLPYLLLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 113 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 KK LD IG+ ++ IR+ +G++ + + G+ +S E +T P I I Sbjct: 8 KKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFL 67 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 L ++ + + K + Sbjct: 68 NVPLPYLLLEQKDRLKVVKKVER 90 >gi|323126263|gb|ADX23560.1| DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 124 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 V ++K +R + +Q +A A++ +ENG + + L +++S D Sbjct: 1 MTKVAEQLKQLRVKHQLSQDALAEQLFISRQAISKWENGDTIPDLDNLVRLTEIFDVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + + E + K LD Sbjct: 61 ELVLAKPHEVKVERIYENKPLDLQKYNK 88 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +LK +R +SQ + L + +S +E G TIP++ ++ ++ LD Sbjct: 1 MTKVAEQLKQLRVKHQLSQDALAEQLFISRQAISKWENGDTIPDLDNLVRLTEIFDVSLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + ++R N+ K +K Sbjct: 61 ELVLAK--PHEVKVERIYENKPLDLQKYNK 88 >gi|331700580|ref|YP_004397539.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329127923|gb|AEB72476.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 74 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V +I+ R N TQ E+ + ++ +E G S I + L N ++IS D + Sbjct: 2 NVSQKIQYCRTLRNLTQDEVGNLLHVSRKTISGWETGRSSPDILSLVKLCNLFDISLDDL 61 Query: 91 YDGE 94 E Sbjct: 62 LRDE 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +++ R + ++Q E G LL + T+S +E GR+ P+I K+ + LD Sbjct: 1 MNVSQKIQYCRTLRNLTQDEVGNLLHVSRKTISGWETGRSSPDILSLVKLCNLFDISLDD 60 Query: 172 IYFGDEVI 179 + + +I Sbjct: 61 LLRDEHMI 68 >gi|225378528|ref|ZP_03755749.1| hypothetical protein ROSEINA2194_04196 [Roseburia inulinivorans DSM 16841] gi|225209631|gb|EEG91985.1| hypothetical protein ROSEINA2194_04196 [Roseburia inulinivorans DSM 16841] Length = 131 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Query: 20 IITPEIRQYW--KDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYA 76 + E R Y+ K+ G R+ D+R + TQ+E+A+ + V+ ENG S SI Sbjct: 29 AVRKEKRMYFDAKEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLL 88 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVT 104 + L +S D++ G + Sbjct: 89 IELSCILHVSTDYLLMGSEPSKEKVKND 116 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 1/95 (1%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQ 148 + + D G RL +R +G++Q E LG+ +S E Sbjct: 19 LTFRRSGSVPAVRKEKRMYFDAKEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMEN 78 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 G I ++ + D++ G E K Sbjct: 79 GERSCSIDLLIELSCILHVSTDYLLMGSEPSKEKV 113 >gi|167755494|ref|ZP_02427621.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|237733722|ref|ZP_04564203.1| predicted protein [Mollicutes bacterium D7] gi|167704433|gb|EDS19012.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|229383320|gb|EEO33411.1| predicted protein [Coprobacillus sp. D7] Length = 287 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+ +RK N +Q+ +A AV+ +E S + L Y +S D + Sbjct: 16 EIANRLVRLRKEKNLSQEALANELGISRQAVSKWERAEASPDTDNLILLAKLYGMSLDDL 75 Query: 91 YDGEVIDRRYEDVTN 105 + + + Sbjct: 76 LKTDQKEFESGNNQQ 90 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RL +RK+K +SQ LG+ +S +E+ P+ + ++ LD Sbjct: 14 NIEIANRLVRLRKEKNLSQEALANELGISRQAVSKWERAEASPDTDNLILLAKLYGMSLD 73 Query: 171 WIYFGDEVIVPK 182 + D+ Sbjct: 74 DLLKTDQKEFES 85 >gi|108801860|ref|YP_642057.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119871013|ref|YP_940965.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126437828|ref|YP_001073519.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108772279|gb|ABG11001.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119697102|gb|ABL94175.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126237628|gb|ABO01029.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 219 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 39/95 (41%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 P L + +E + ++ +G ++ +R+ + T EMA ++ ++ Sbjct: 9 PLLRNKSGTARERDPQEPVDDTEFEAAIGRNVRQLRQQHGLTVAEMAERVGISKAMMSKI 68 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 EN S S+ L +++ ++ G ++R Sbjct: 69 ENAQTSCSLSTLALLAKGFDVPVTTLFRGADVERP 103 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG ++ +R+ G++ E + +G+ + +S E +T + + + + + Sbjct: 35 AIGRNVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPVTTL 94 Query: 173 YFGDEVIVPKS-IKRAKGNQSSKKSKKDKKS 202 + G +V P + +K G + + K+ Sbjct: 95 FRGADVERPAAFVKAGTGARIVRNGTKEGHD 125 >gi|317131914|ref|YP_004091228.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469893|gb|ADU26497.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 118 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 39/81 (48%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G R++ +R+ +Q ++A ++ +N +E G+ S + ++ + +++S D Sbjct: 1 MKEIGNRLRALREGVKLSQAKIANLVGTTQATINRYETGVSSPPLNVLIWYADHFDVSMD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 +I+ + K + Sbjct: 61 YIFARTEKPQGKLYDYRPKFI 81 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG RL+++R+ +SQ + L+G +T++ YE G + P + +D Sbjct: 1 MKEIGNRLRALREGVKLSQAKIANLVGTTQATINRYETGVSSPPLNVLIWYADHFDVSMD 60 Query: 171 WIYFGDE 177 +I+ E Sbjct: 61 YIFARTE 67 >gi|258650681|ref|YP_003199837.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553906|gb|ACV76848.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 197 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG R+K +R T +A +S ++ E G S+ L L Y + D Sbjct: 13 EQVGPRLKRLRTQRQVTLTALAAATGISKSTLSRLETGQRKASLELLLPLAMAYNVPLDD 72 Query: 90 IYDGEVIDRRYEDVTNKK 107 + G I + ++ Sbjct: 73 LVGGPDIGDPRVRLKPRR 90 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R + ++ G+ STLS E G+ ++ + LD + G + Sbjct: 19 LKRLRTQRQVTLTALAAATGISKSTLSRLETGQRKASLELLLPLAMAYNVPLDDLVGGPD 78 Query: 178 VIVPKS 183 + P+ Sbjct: 79 IGDPRV 84 >gi|183221102|ref|YP_001839098.1| putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911194|ref|YP_001962749.1| transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775870|gb|ABZ94171.1| Transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779524|gb|ABZ97822.1| Putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 137 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 7/142 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I +RK Q +MA S ++ E G + ++ + S D +++ Sbjct: 3 NHIYMLRKKRGIKQYDMARALGVSPSYLSKIETGAQDPTEKFKSSCAKYLKTSVDKLFND 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 ++ Y + +N + +A+ R++ G+ Q +F K L + LS E G P Sbjct: 63 SAVEDIYPEFSNGLKNKLWAV-------RRELGIKQYDFAKKLKVSTPFLSKVELGLLEP 115 Query: 154 EIKPARKIKQVTKKHLDWIYFG 175 + +V K + ++ G Sbjct: 116 PEDFKNLVSKVLKMEKNELFLG 137 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + +RK +G+ Q + + LG+ S LS E G P K + K +D ++ Sbjct: 1 MNNHIYMLRKKRGIKQYDMARALGVSPSYLSKIETGAQDPTEKFKSSCAKYLKTSVDKLF 60 Query: 174 FG 175 Sbjct: 61 ND 62 Score = 38.0 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 6/67 (8%), Positives = 24/67 (35%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ + ++ +R+ Q + A ++ E G+ + + ++ Sbjct: 71 EFSNGLKNKLWAVRRELGIKQYDFAKKLKVSTPFLSKVELGLLEPPEDFKNLVSKVLKME 130 Query: 87 FDWIYDG 93 + ++ G Sbjct: 131 KNELFLG 137 >gi|226949688|ref|YP_002804779.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226842029|gb|ACO84695.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 82 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+ + TQ ++A SAV +ENG+ I + + + + IS D++ Sbjct: 5 DRLKGLREDRDLTQDQIANILKITRSAVANYENGIREPDISLLVKIADYFNISLDYLLCR 64 Query: 94 EVIDRRYED 102 + Sbjct: 65 TNKMEPFYK 73 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R+D+ ++Q + +L + S ++NYE G P+I KI LD+ Sbjct: 1 MVFKDRLKGLREDRDLTQDQIANILKITRSAVANYENGIREPDISLLVKIADYFNISLDY 60 Query: 172 IYFGDEVIVP 181 + + P Sbjct: 61 LLCRTNKMEP 70 >gi|260664326|ref|ZP_05865179.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|260562212|gb|EEX28181.1| predicted protein [Lactobacillus jensenii SJ-7A-US] Length = 318 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 11/148 (7%) Query: 36 IKDIRKANNKTQKEMA------IGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 IKDIR+ TQ E + G + +E+G+ S + L +S + Sbjct: 6 IKDIRQNMKMTQAEFSSYLATEKGVKISRGTIAKYESGVNFPSPKTIHKLSRALGVSDFY 65 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL---GMP--NSTLS 144 + R+K +RK +Q + LL G+ +T++ Sbjct: 66 LSGCATNLILSLLYLAYYEKRIQMSPNRIKELRKANHFTQQQLSILLKKEGISANRATVA 125 Query: 145 NYEQGRTIPEIKPARKIKQVTKKHLDWI 172 YE G +P + + K + +I Sbjct: 126 RYEAGTRVPNEDVWNALAHIFCKDIAFI 153 Score = 42.6 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 9/95 (9%) Query: 34 TRIKDIRKANNKTQKEMAIGA---NQL--ESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 RIK++RKAN+ TQ++++I + V +E G + L + + Sbjct: 92 NRIKELRKANHFTQQQLSILLKKEGISANRATVARYEAGTRVPNEDVWNALAHIFCKDIA 151 Query: 89 WI----YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 +I E I++ + D + ++L+ Sbjct: 152 FIRGQGLRKENIEKAQIFLLLSAYYDNHVTLSKLR 186 >gi|228945460|ref|ZP_04107812.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814213|gb|EEM60482.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 149 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDELI 62 Query: 92 DGEVIDRRYEDVTNKKR 108 G + + + Sbjct: 63 KGNQNIKEKIHIDEENE 79 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 42/86 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + G++ I K + K+++ Sbjct: 61 LIKGNQNIKEKIHIDEENEDFEKENE 86 >gi|134300624|ref|YP_001114120.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053324|gb|ABO51295.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 139 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 4/100 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK N ++++A +V +E+G + + L + Y++S D++ Sbjct: 27 IGERLRQLRKEKNINREDVANLLGVTVRSVTNYESGQRNLDPDQLIALADYYDVSMDYLT 86 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 D T + + L+ R K ++ + Sbjct: 87 GR--SDNPKPPQTTTIDDEWPEVANVLR--RNGKKLTTED 122 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG RL+ +RK+K +++ + LLG+ +++NYE G+ + + +D Sbjct: 24 MSTIGERLRQLRKEKNINREDVANLLGVTVRSVTNYESGQRNLDPDQLIALADYYDVSMD 83 Query: 171 WIYFGDEVIVPKSIKRAKGNQSS----------KKSKKDKK 201 ++ + P K + +DKK Sbjct: 84 YLTGRSDNPKPPQTTTIDDEWPEVANVLRRNGKKLTTEDKK 124 >gi|302392845|ref|YP_003828665.1| XRE family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302204922|gb|ADL13600.1| transcriptional regulator, XRE family [Acetohalobium arabaticum DSM 5501] Length = 129 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R +N QK++A N SA+ +E G L + +E+S D++ Sbjct: 5 KRLKKLRLEHNLRQKDIAEDLNLTPSAIGFYEQGKRKPDFEMLSRLADYFEVSVDYLLGR 64 Query: 94 EVIDRRYEDVTNKKRL 109 D+ Y + ++ Sbjct: 65 TKKDQFYHSQQKQGKM 80 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R + + Q + + L + S + YEQG+ P+ + ++ + +D+ Sbjct: 1 MKFNKRLKKLRLEHNLRQKDIAEDLNLTPSAIGFYEQGKRKPDFEMLSRLADYFEVSVDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|291540762|emb|CBL13873.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 111 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+KD+R+ +Q+ +A N + + +EN +I + + +++S D++ Sbjct: 2 NRLKDLRREMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLIG- 60 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 ++ + + LK R Sbjct: 61 -YSSYAHKVEEVSETALNEDELSFLKKYR 88 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R++ G+SQ L + T+ YE P I + + +D++ Sbjct: 1 MNRLKDLRREMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLIG 60 Query: 175 GDEVIVP-KSIKRAKGNQSSKKSKKDKKSSNP 205 + + N+ K +S NP Sbjct: 61 YSSYAHKVEEVSETALNEDELSFLKKYRSINP 92 >gi|229163310|ref|ZP_04291262.1| Transcriptional regulator, MerR [Bacillus cereus R309803] gi|228620091|gb|EEK76965.1| Transcriptional regulator, MerR [Bacillus cereus R309803] Length = 194 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 42/110 (38%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + ++G+ I++IR+ T ++ G + ++ EN S SI + Sbjct: 4 IVVYKKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETI 63 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 N + ++ + + +K R++ + + G+ Sbjct: 64 SNFLNVPLPYLLLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 113 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 KK LD IG+ ++ IR+ +G++ + + G+ +S E +T P I I Sbjct: 8 KKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFL 67 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 L ++ + + K + Sbjct: 68 NVPLPYLLLEQKDRLKVVKKVER 90 >gi|289769674|ref|ZP_06529052.1| transcriptional regulator [Streptomyces lividans TK24] gi|289699873|gb|EFD67302.1| transcriptional regulator [Streptomyces lividans TK24] Length = 208 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Q +G R++ IR+A T ++A S ++ E+G +R+ L L + Sbjct: 13 ETAQVMTSLGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAH 72 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAI 114 + D + D R + + Sbjct: 73 RLPLDELVGSRTGDPRVHPRPFTRHGQTWVP 103 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++GARL++IR+ +G++ + G+ STLS E G+ P ++ + + + LD Sbjct: 18 MTSLGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLD 77 Query: 171 WIY---FGDEVIVPKSIKR 186 + GD + P+ R Sbjct: 78 ELVGSRTGDPRVHPRPFTR 96 >gi|256785782|ref|ZP_05524213.1| hypothetical protein SlivT_14926 [Streptomyces lividans TK24] Length = 202 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Q +G R++ IR+A T ++A S ++ E+G +R+ L L + Sbjct: 7 ETAQVMTSLGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAH 66 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAI 114 + D + D R + + Sbjct: 67 RLPLDELVGSRTGDPRVHPRPFTRHGQTWVP 97 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++GARL++IR+ +G++ + G+ STLS E G+ P ++ + + + LD Sbjct: 12 MTSLGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLD 71 Query: 171 WIY---FGDEVIVPKSIKR 186 + GD + P+ R Sbjct: 72 ELVGSRTGDPRVHPRPFTR 90 >gi|21223122|ref|NP_628901.1| hypothetical protein SCO4743 [Streptomyces coelicolor A3(2)] gi|3449255|emb|CAA20399.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 201 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Q +G R++ IR+A T ++A S ++ E+G +R+ L L + Sbjct: 6 ETAQVMTSLGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAH 65 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAI 114 + D + D R + + Sbjct: 66 RLPLDELVGSRTGDPRVHPRPFTRHGQTWVP 96 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++GARL++IR+ +G++ + G+ STLS E G+ P ++ + + + LD Sbjct: 11 MTSLGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLD 70 Query: 171 WIY---FGDEVIVPKSIKR 186 + GD + P+ R Sbjct: 71 ELVGSRTGDPRVHPRPFTR 89 >gi|148265766|ref|YP_001232472.1| putative prophage repressor [Geobacter uraniireducens Rf4] gi|146399266|gb|ABQ27899.1| putative prophage repressor [Geobacter uraniireducens Rf4] Length = 216 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 39/75 (52%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK++R+A + TQKE A ++ ++ E G S S + L + Y+I+ +W+Y Sbjct: 12 IGLRIKELRQAKDMTQKEFADSLGIVQGFLSGIERGKKSPSDTLLIALCHLYKINKEWLY 71 Query: 92 DGEVIDRRYEDVTNK 106 G + +K Sbjct: 72 TGRGDMFGKTQLPDK 86 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +R+ K M+Q EF LG+ LS E+G+ P + + K + +W+Y G Sbjct: 16 IKELRQAKDMTQKEFADSLGIVQGFLSGIERGKKSPSDTLLIALCHLYKINKEWLYTG 73 >gi|304392640|ref|ZP_07374580.1| transcriptional regulator [Ahrensia sp. R2A130] gi|303295270|gb|EFL89630.1| transcriptional regulator [Ahrensia sp. R2A130] Length = 197 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +RK+ + T E+A+ + ++ E G+ S SI L +++ W + Sbjct: 19 LGNEIRQLRKSRSLTLAELALRIGRSVGFISQIERGLSSPSIDDLRALAAAFDVPISWFF 78 Query: 92 DGEVIDRRYEDV 103 E ++ Sbjct: 79 ATEPLNEAERGT 90 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G ++ +RK + ++ E +G +S E+G + P I R + + Sbjct: 15 DAMALGNEIRQLRKSRSLTLAELALRIGRSVGFISQIERGLSSPSIDDLRALAAAFDVPI 74 Query: 170 DWIYFGD 176 W + + Sbjct: 75 SWFFATE 81 >gi|73663748|ref|YP_302529.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496263|dbj|BAE19584.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 187 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 41/82 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K R+ +SQ + L + T+SN+E ++ P+I + + LD Sbjct: 1 MNLGHQIKYYRQRGYLSQESLAEKLYVSRQTISNWENDKSYPDIHNLLMLSSLFDVSLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + GD I+ + +K ++ N SS Sbjct: 61 LVKGDVEIMERKLKESRFNLSS 82 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 38/88 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK R+ +Q+ +A ++ +EN I L L + +++S D + Sbjct: 2 NLGHQIKYYRQRGYLSQESLAEKLYVSRQTISNWENDKSYPDIHNLLMLSSLFDVSLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G+V + ++ L + + + Sbjct: 62 VKGDVEIMERKLKESRFNLSSHLMIWPM 89 >gi|70725257|ref|YP_252171.1| hypothetical protein SH0256 [Staphylococcus haemolyticus JCSC1435] gi|68445981|dbj|BAE03565.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 134 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 36/72 (50%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RI+++RK+ +Q+++A N +++ +E + S I L + + +S + Sbjct: 4 KSVGERIRNLRKSKKMSQEKLAEKLNVSRHSISNWERDVSSPDIHALLEMTELFGVSLNH 63 Query: 90 IYDGEVIDRRYE 101 + G+ + Sbjct: 64 LVKGDELIVNKY 75 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 46/79 (58%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + ++G R++++RK K MSQ + + L + ++SN+E+ + P+I ++ ++ Sbjct: 1 MKTKSVGERIRNLRKSKKMSQEKLAEKLNVSRHSISNWERDVSSPDIHALLEMTELFGVS 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 L+ + GDE+IV K + A Sbjct: 61 LNHLVKGDELIVNKYVYAA 79 >gi|56962989|ref|YP_174716.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909228|dbj|BAD63755.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 135 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G+++K +R+ +Q+++A N AV +E I+ + L +++S D++ Sbjct: 4 FGSKLKQLREEQGFSQEQLAKELNVSRQAVWKWETDKGLPDIQNIVRLSELFDVSTDYLL 63 Query: 92 -DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E+I D + Sbjct: 64 KESELIAEPTPSRKWDSEQDIGFYLGMI 91 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 40/77 (51%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ G++LK +R+++G SQ + K L + + +E + +P+I+ ++ ++ D Sbjct: 1 MHSFGSKLKQLREEQGFSQEQLAKELNVSRQAVWKWETDKGLPDIQNIVRLSELFDVSTD 60 Query: 171 WIYFGDEVIVPKSIKRA 187 ++ E+I + R Sbjct: 61 YLLKESELIAEPTPSRK 77 >gi|300312341|ref|YP_003776433.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075126|gb|ADJ64525.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 115 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +++G RIK++R AN +Q+E+ + ++ E G L L E+ + Sbjct: 2 FSEEIGGRIKEVRLANGLSQRELGQRLDTSTGHISWLEAGKAMPGGELLLQLHREFSVDL 61 Query: 88 DWIYDGEVIDRRYEDVTN--KKRLDPYAI 114 +W+ GE + + ++ +D Y Sbjct: 62 NWLLTGEEGEPGVMETDEEVRQLVDHYCR 90 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG R+K +R G+SQ E G+ L +S E G+ +P + ++ + Sbjct: 1 MFSEEIGGRIKEVRLANGLSQRELGQRLDTSTGHISWLEAGKAMPGGELLLQLHREFSVD 60 Query: 169 LDWIYFGDE 177 L+W+ G+E Sbjct: 61 LNWLLTGEE 69 >gi|229159135|ref|ZP_04287181.1| hypothetical protein bcere0010_53010 [Bacillus cereus ATCC 4342] gi|228624336|gb|EEK81117.1| hypothetical protein bcere0010_53010 [Bacillus cereus ATCC 4342] Length = 274 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 40/108 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + D+G +IK +R N TQ+++A ++ +E G + L L N + +S D Sbjct: 53 YMDIGKKIKHLRLINKMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSID 112 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + + + + + + S+ + LL Sbjct: 113 SLLKEDSNLQNQIIKQSNYKRYLLIAALYIYSLITIVVIFYCLIAFLL 160 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 37/81 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++K +R M+Q + L + +S +E G+++P++ + + +D Sbjct: 53 YMDIGKKIKHLRLINKMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSID 112 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 + D + + IK++ + Sbjct: 113 SLLKEDSNLQNQIIKQSNYKR 133 >gi|229171786|ref|ZP_04299358.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3] gi|228611683|gb|EEK68933.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3] Length = 149 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|228987613|ref|ZP_04147727.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772073|gb|EEM20525.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 194 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 42/110 (38%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + ++G+ I++IR+ T ++ G + ++ EN S SI + Sbjct: 4 IVVYKKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETI 63 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 N + ++ + + +K R++ + + G+ Sbjct: 64 SNFLNVPLPYLLLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 113 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 KK LD IG+ ++ IR+ +G++ + + G+ +S E +T P I I Sbjct: 8 KKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFL 67 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 L ++ + + K + Sbjct: 68 NVPLPYLLLEQKDRLKVVKKVER 90 >gi|206974889|ref|ZP_03235804.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222095479|ref|YP_002529539.1| hypothetical protein BCQ_1819 [Bacillus cereus Q1] gi|206746908|gb|EDZ58300.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221239537|gb|ACM12247.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 146 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDELI 62 Query: 92 DGEVIDRRY 100 G + Sbjct: 63 KGNQNIKEK 71 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPK 182 + G++ I K Sbjct: 61 LIKGNQNIKEK 71 >gi|332686910|ref|YP_004456684.1| repressor protein [Melissococcus plutonius ATCC 35311] gi|332370919|dbj|BAK21875.1| repressor protein [Melissococcus plutonius ATCC 35311] Length = 239 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G +IK+ R+ N TQ+++A N +++ +E G + L YE Sbjct: 1 MMDLSKFIGNKIKEYRERRNLTQEDLADMLNTTRQSISRYETGERKANQDMLFKLSEIYE 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 IS + + ++L + Sbjct: 61 ISINDFFPSNSKKSITTIYNELEQLRQKKVYNY 93 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 10/102 (9%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++K R+ + ++Q + +L ++S YE G K+ ++ + ++ Sbjct: 7 FIGNKIKEYRERRNLTQEDLADMLNTTRQSISRYETGERKANQDMLFKLSEIYEISINDF 66 Query: 173 Y----------FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + +E+ + K + +S+K K SN Sbjct: 67 FPSNSKKSITTIYNELEQLRQKKVYNYAEEQLESQKQAKQSN 108 >gi|168184026|ref|ZP_02618690.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Bf] gi|237794098|ref|YP_002861650.1| Cro/CI family transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|182672867|gb|EDT84828.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Bf] gi|229260454|gb|ACQ51487.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Ba4 str. 657] Length = 201 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +IK R + +Q+++A ++ +ENG I + L + +S D + Sbjct: 2 DISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDIL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ + + E T + Sbjct: 62 VKGDLEEMKEEIKTEDIK 79 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R D +SQ + + + + T+SN+E G+ P+I + + LD Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + IK + ++ Sbjct: 61 LVKGDLEEMKEEIKTEDIKRFNR 83 >gi|332982308|ref|YP_004463749.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332699986|gb|AEE96927.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 126 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 2/90 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK TQ+E+A SA++L+E + L + + +S D++ Sbjct: 4 ERLVELRKERKMTQEELANVLGISRSALSLYETDKRQPDFQTICRLADFFNVSVDYLLGR 63 Query: 94 EVIDRRYEDV--TNKKRLDPYAIGARLKSI 121 + D ++ Sbjct: 64 TDDRCGVARTTYKAGNKADFILRDPDIREA 93 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL +RK++ M+Q E +LG+ S LS YE + P+ + ++ +D++ Sbjct: 1 MLYERLVELRKERKMTQEELANVLGISRSALSLYETDKRQPDFQTICRLADFFNVSVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|238923480|ref|YP_002936996.1| hypothetical protein EUBREC_1100 [Eubacterium rectale ATCC 33656] gi|238875155|gb|ACR74862.1| Hypothetical protein EUBREC_1100 [Eubacterium rectale ATCC 33656] Length = 123 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 39/88 (44%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G RI+ +R NKTQ A S + L E+G ++ +++ +++ D+ Sbjct: 9 KELGERIRKLRFKRNKTQSYFADMLYISPSYLALIESGKRVPNLDLLIHIAKFTDVTLDY 68 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + G+ + +T + D Y Sbjct: 69 LVFGDDPNCDPLQMTFNRLYDSYDKKQM 96 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N L+P +G R++ +R + +Q F +L + S L+ E G+ +P + I + Sbjct: 2 NNIILNPKELGERIRKLRFKRNKTQSYFADMLYISPSYLALIESGKRVPNLDLLIHIAKF 61 Query: 165 TKKHLDWIYFGDEVI-VPKSIKRAKGNQSSKKSKKDK 200 T LD++ FGD+ P + + S K + + Sbjct: 62 TDVTLDYLVFGDDPNCDPLQMTFNRLYDSYDKKQMEN 98 >gi|153938231|ref|YP_001390160.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934127|gb|ABS39625.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318252|gb|ADF98629.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 201 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +IK R + +Q+++A ++ +ENG I + L + +S D + Sbjct: 2 DISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDIL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ + + E T + Sbjct: 62 VKGDLEEMKEEIKTEDIK 79 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R D +SQ + + + + T+SN+E G+ P+I + + LD Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + IK + ++ Sbjct: 61 LVKGDLEEMKEEIKTEDIKRFNR 83 >gi|145596662|ref|YP_001160959.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305999|gb|ABP56581.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 191 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K R T E+A +S ++ E G S+ L + + I D + Sbjct: 11 EIGPRLKRARAQRGVTLAELAEATGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKL 70 Query: 91 YDGEVIDRRYEDVTNKK 107 D I + +K Sbjct: 71 VDVPQIGDPRVRLQPRK 87 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK R +G++ E + G+ STLS E G+ P ++ I + LD + + Sbjct: 16 LKRARAQRGVTLAELAEATGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKLVDVPQ 75 Query: 178 VIVPKS 183 + P+ Sbjct: 76 IGDPRV 81 >gi|320160790|ref|YP_004174014.1| Xre family DNA-binding protein [Anaerolinea thermophila UNI-1] gi|319994643|dbj|BAJ63414.1| Xre family DNA-binding protein [Anaerolinea thermophila UNI-1] Length = 224 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 5/163 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G + D R++ ++ ++ A + FE G S ++ L + D Sbjct: 10 RKKLGAILYDSRRSLCRSLEDCARILGISPEEYSQFERGEGSPTLPQLELLSLYLNVPID 69 Query: 89 WI-----YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 E + E+V+ +L I A L+ R+ KG+S E + G+ L Sbjct: 70 VFWDNRPVSAERQETLPENVSTALKLRNRIIAASLRLFRQKKGISTGELAQKTGIEEDVL 129 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 YE G + + + L I + +++ Sbjct: 130 LAYENGTREIPLPELETFAEALEVPLSQFLDEKGPIAKRRLQK 172 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 45/157 (28%), Gaps = 27/157 (17%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 S + + ++ ++ + + ++ R+ + E+A E + +ENG Sbjct: 77 VSAERQETLPENVSTALKLRNRIIAASLRLFRQKKGISTGELAQKTGIEEDVLLAYENGT 136 Query: 69 CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + E+ D + + R Sbjct: 137 REIPLPELETFAEALEVPLSQFLDEKGP---------------------IAKRR-----L 170 Query: 129 QIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQV 164 Q ++ + +P Q P ++ A ++ ++ Sbjct: 171 QKQWAEQFENLPEEMQQFIAQPVNRPYLELAMRLSEL 207 Score = 42.2 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 R+ S + ++LG+ S +E+G P + + +D +++ + + Sbjct: 21 RRSLCRSLEDCARILGISPEEYSQFERGEGSPTLPQLELLSLYLNVPID-VFWDNRPVSA 79 Query: 182 KSIKRAKGNQSS 193 + + N S+ Sbjct: 80 ERQETLPENVST 91 >gi|226948085|ref|YP_002803176.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843648|gb|ACO86314.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 201 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +IK R + +Q+++A ++ +ENG I + L + +S D + Sbjct: 2 DISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDIL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ + + E T + Sbjct: 62 VKGDLEEMKEEIKTEDIK 79 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R D +SQ + + + + T+SN+E G+ P+I + + LD Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + IK + ++ Sbjct: 61 LVKGDLEEMKEEIKTEDIKRFNR 83 >gi|258509371|ref|YP_003172122.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|257149298|emb|CAR88271.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259650650|dbj|BAI42812.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 215 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 34/86 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ ++ TQ ++ + ++ +ENG I + + + Y+I D + Sbjct: 2 QFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQIPLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + ++ + +K+ Sbjct: 62 LREDQDIVQHYETISKQAQRYQKYFQ 87 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ ++Q++ G L + T+S++E GR+ P+I I + + LD Sbjct: 1 MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQIPLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ IV +K Q +K Sbjct: 61 LLREDQDIVQHYETISKQAQRYQK 84 >gi|118472815|ref|YP_890484.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118174102|gb|ABK74998.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 38/95 (40%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 P L + +E E ++ +G ++ +R+ + T EMA ++ ++ Sbjct: 6 PLLRNRSGTARERDPQAPVEELEFEAAIGRNVRQLRQQHGLTVAEMAARVGISKAMMSKI 65 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 EN S S+ L ++ ++ G ++R Sbjct: 66 ENAQTSCSLSTLALLAKGLDVPVTSLFRGADVERP 100 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 34/75 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG ++ +R+ G++ E +G+ + +S E +T + + + + + Sbjct: 32 AIGRNVRQLRQQHGLTVAEMAARVGISKAMMSKIENAQTSCSLSTLALLAKGLDVPVTSL 91 Query: 173 YFGDEVIVPKSIKRA 187 + G +V P + +A Sbjct: 92 FRGADVERPAAFVKA 106 >gi|20808515|ref|NP_623686.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517137|gb|AAM25290.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 144 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +R + TQ+E + +++L+E+ S S + + +S DW+ Sbjct: 4 LGERIKQLRLEHGMTQEEFGKLFGVTKYSISLYESNKTSPSDEIKKKIAEYFNVSMDWLM 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 G R+ N K L+ Sbjct: 64 -GLTDVRKPFIPENYKEKYKITKRDMLQ 90 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +R + GM+Q EFGKL G+ ++S YE +T P + +KI + +DW+ Sbjct: 6 ERIKQLRLEHGMTQEEFGKLFGVTKYSISLYESNKTSPSDEIKKKIAEYFNVSMDWLMGL 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 +V P + K K Sbjct: 66 TDVRKPFIPENYKEKYKITKRDM 88 >gi|28377773|ref|NP_784665.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28270606|emb|CAD63512.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 183 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT+IK+ R+ + +Q+ +A + ++ +E G + + L + +S D + Sbjct: 5 IGTKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFSVSTDELL 64 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R+ SQ + L + T+S +E G++ P+++ + ++ D + Sbjct: 9 IKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFSVSTDELL 64 >gi|282874480|ref|ZP_06283366.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|281296736|gb|EFA89244.1| DNA-binding protein [Staphylococcus epidermidis SK135] Length = 104 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N TQ+++ N V+ +E M I L L + + IS + + Sbjct: 3 LGEQIKKHRKLLNMTQEDLCQKLNTTRQTVSKWEKNMIEPDINTLLKLSDIFGISLNELI 62 Query: 92 DGEVIDRRYEDVTN 105 GE N Sbjct: 63 TGEKEFINNSKEMN 76 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K RK M+Q + + L T+S +E+ P+I K+ + L+ Sbjct: 1 MVLGEQIKKHRKLLNMTQEDLCQKLNTTRQTVSKWEKNMIEPDINTLLKLSDIFGISLNE 60 Query: 172 IYFGDEVIVPKSIK 185 + G++ + S + Sbjct: 61 LITGEKEFINNSKE 74 >gi|302547803|ref|ZP_07300145.1| putative Helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302465421|gb|EFL28514.1| putative Helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 197 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 1/114 (0%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +I + VG R++ +R+ T +++ S ++ E+G ++ L L Y Sbjct: 5 DIPEVLNAVGPRLRALRRERGATLAQLSETTGISLSTLSRLESGQRKPTLELLLPLAKTY 64 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 + D + R + + + QI G+ G Sbjct: 65 GVQLDELVGAPPTGDPRIHPRPFTRHGQTFVPLT-RYLGGLHAYKQILPGRKTG 117 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G RL+++R+++G + + + G+ STLS E G+ P ++ + + LD Sbjct: 11 NAVGPRLRALRRERGATLAQLSETTGISLSTLSRLESGQRKPTLELLLPLAKTYGVQLDE 70 Query: 172 IY----FGDEVIVPKSIKR 186 + GD I P+ R Sbjct: 71 LVGAPPTGDPRIHPRPFTR 89 >gi|226334782|ref|YP_002784454.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226246002|dbj|BAH56102.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 164 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++ R T ++A AV+ +E G + L + S + Sbjct: 25 GDKLREQRVKARLTPDDLAARIGTTRQAVSTWETGRSRPAPEMLGLLAEALDTSIAVLVP 84 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 A R+ +R ++Q LG+ +TL+ E G Sbjct: 85 ------------------IPAGKLRMSDLRVRAALNQRNAAARLGIGATTLAEVENGVKP 126 Query: 153 PEIKPARKIKQVTKKH 168 KI ++ Sbjct: 127 VRDDLVPKIAELYGVD 142 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 21/56 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R ++ + +G +S +E GR+ P + + + + + Sbjct: 28 LREQRVKARLTPDDLAARIGTTRQAVSTWETGRSRPAPEMLGLLAEALDTSIAVLV 83 >gi|169333724|ref|ZP_02860917.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM 17244] gi|169259573|gb|EDS73539.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM 17244] Length = 197 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +++ +RK + TQ ++A + +S++ +E+ S+ + + +S D++ Sbjct: 2 FGEKLRSLRKEHGMTQVDLANALDLDKSSIAKYESAGIIPSVDTLQKISALFNVSIDYLL 61 Query: 92 DGEVIDRRYEDVTN 105 + D Sbjct: 62 NAPFGDINNVMNVE 75 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G +L+S+RK+ GM+Q++ L + S+++ YE IP + +KI + +D++ Sbjct: 1 MFGEKLRSLRKEHGMTQVDLANALDLDKSSIAKYESAGIIPSVDTLQKISALFNVSIDYL 60 Query: 173 Y---FGD 176 FGD Sbjct: 61 LNAPFGD 67 >gi|160914687|ref|ZP_02076901.1| hypothetical protein EUBDOL_00694 [Eubacterium dolichum DSM 3991] gi|158433227|gb|EDP11516.1| hypothetical protein EUBDOL_00694 [Eubacterium dolichum DSM 3991] Length = 313 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 2/98 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I+ RK +Q+EMA+ + + ++ +E + + + ++S + + D Sbjct: 22 ENIRKYRKECGLSQEEMAVKLHVVRQTISKWETNLSVPDADMLVEIAKLLQVSVEQLLDY 81 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 D D + + A +K R+ + Q Sbjct: 82 SGKDSLSVDTELARLNEELA--KHIKEERRLQLYHQKR 117 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + + + N + ++ RK+ G+SQ E L + T+S +E ++P+ Sbjct: 4 KNHNEFYNNGNEVFLMLNENIRKYRKECGLSQEEMAVKLHVVRQTISKWETNLSVPDADM 63 Query: 158 ARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +I ++ + ++ + + + + + A+ N+ K K+++ Sbjct: 64 LVEIAKLLQVSVEQLLDYSGKDSLSVDTELARLNEELAKHIKEER 108 >gi|169832243|ref|YP_001718225.1| helix-turn-helix domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169639087|gb|ACA60593.1| helix-turn-helix domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 95 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ R+A TQ ++A N ++ ++ +E G+ I L E S D++ Sbjct: 4 DRLRKAREARGWTQSQLAAKLNVSDATISRYEKGLRYPDIETLKRLALVLETSVDYLVGE 63 Query: 94 EVIDRRYEDVTNKKRL 109 + D + +R Sbjct: 64 KPDDPDEKLPPEARRC 79 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL+ R+ +G +Q + L + ++T+S YE+G P+I+ +++ V + +D++ Sbjct: 1 MLEDRLRKAREARGWTQSQLAAKLNVSDATISRYEKGLRYPDIETLKRLALVLETSVDYL 60 Query: 173 YFGDEVIVPKS 183 G++ P Sbjct: 61 V-GEKPDDPDE 70 >gi|324989664|gb|EGC21608.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] Length = 168 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 38/85 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 + + V ++ D Y Sbjct: 62 LLEDSDKPEIKPVLSEDEKDRYYKE 86 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E IK + K+ KS Sbjct: 61 LLL--EDSDKPEIKPVLSEDEKDRYYKEVKS 89 >gi|323350704|ref|ZP_08086365.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322123124|gb|EFX94815.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 169 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 38/87 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D Sbjct: 1 MMKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIG 115 ++ + + V ++ D Y Sbjct: 61 YLLLEDSNKPEIKPVLSEDEKDRYYKE 87 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D Sbjct: 1 MMKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 ++ E IK + K+ KS Sbjct: 61 YLLL--EDSNKPEIKPVLSEDEKDRYYKEVKS 90 >gi|295400956|ref|ZP_06810931.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294976958|gb|EFG52561.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 139 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G ++K +RK +N TQ+++A N S ++ +ENG ++ L N YE+S Sbjct: 2 KKMRKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGELLPDVQSLEKLSNLYEVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 D++ + N L Sbjct: 62 IDFLIGKHTTKKELLREMNLLYQTDRIDEKML 93 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +LK +RK +Q + + L + S +S +E G +P+++ K+ + + +D Sbjct: 4 MRKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGELLPDVQSLEKLSNLYEVSID 63 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 ++ G + ++ + N + + D+K Sbjct: 64 FLI-GKHTTKKELLR--EMNLLYQTDRIDEK 91 >gi|21218451|ref|NP_632000.1| hypothetical protein pLP9000_09 [Lactobacillus plantarum] gi|20853812|gb|AAM26929.1| unknown [Lactobacillus plantarum] Length = 112 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ R+ TQ +A N A++ +E G I + + N ++I+ D + Sbjct: 3 LGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDSLI 62 Query: 92 DGEV 95 G+ Sbjct: 63 KGDD 66 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+K R+ + +Q + L + +S +E G P+I +I + LD Sbjct: 1 MTLGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDS 60 Query: 172 IYFGDEVIVPKSI 184 + GD+ + + Sbjct: 61 LIKGDDSLKKSIV 73 >gi|269216324|ref|ZP_06160178.1| DNA-binding protein [Slackia exigua ATCC 700122] gi|269130583|gb|EEZ61661.1| DNA-binding protein [Slackia exigua ATCC 700122] Length = 198 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK +R N+ +Q ++A ++ +EN ++ L L +++S D + Sbjct: 2 ELAGQIKRLRSENDLSQDDLASRIYVSRQTISNWENDKTYPDVQSLLLLSATFDVSVDSL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G+V Sbjct: 62 IKGDVTAMEEIIGNKD 77 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 34/73 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +R + +SQ + + + T+SN+E +T P+++ + +D Sbjct: 1 MELAGQIKRLRSENDLSQDDLASRIYVSRQTISNWENDKTYPDVQSLLLLSATFDVSVDS 60 Query: 172 IYFGDEVIVPKSI 184 + GD + + I Sbjct: 61 LIKGDVTAMEEII 73 >gi|163814918|ref|ZP_02206306.1| hypothetical protein COPEUT_01069 [Coprococcus eutactus ATCC 27759] gi|158449857|gb|EDP26852.1| hypothetical protein COPEUT_01069 [Coprococcus eutactus ATCC 27759] Length = 159 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ ++R NN +Q+E+A + +++ +EN + L++ + +++S D++ Sbjct: 16 FGERLYELRNKNNLSQEELAEVLDVSRQSISKWENDKAYPEMTRLLFMSDYFDVSLDYLM 75 Query: 92 DG---EVIDRRYEDVTNKKRLDPYAIGARL 118 G E + + K + + Sbjct: 76 RGIKKENNEEKVTADDADKISNDKYKTKNI 105 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RL +R +SQ E ++L + ++S +E + PE+ + LD+ Sbjct: 14 MTFGERLYELRNKNNLSQEELAEVLDVSRQSISKWENDKAYPEMTRLLFMSDYFDVSLDY 73 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + G + + ++ + + K S K+ N Sbjct: 74 LMRG--IKKENNEEKVTADDADKISNDKYKTKN 104 >gi|239946011|ref|ZP_04697948.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239992479|ref|ZP_04713143.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291449463|ref|ZP_06588853.1| regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291352410|gb|EFE79314.1| regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 199 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 PE+ VG R++ +RK T ++ S ++ E+G S+ L + Sbjct: 9 PELESVLSGVGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGGRRPSLELMLPIARA 68 Query: 83 YEISFDWIY 91 +E+ D + Sbjct: 69 HEVPLDDLV 77 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+ +RKD+G++ G+ STLS E G P ++ I + + LD + Sbjct: 22 LRRLRKDRGVTLAALSAATGISVSTLSRLESGGRRPSLELMLPIARAHEVPLDDLVGAAP 81 Query: 175 -GDEVIVPKSI 184 GD + K I Sbjct: 82 VGDPRVRAKPI 92 >gi|210618124|ref|ZP_03291909.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] gi|210148986|gb|EEA79995.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] Length = 122 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 37/97 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +K +G RIK R N TQ+ +A V+ E G S S+ + + N Sbjct: 1 MELDYKAIGKRIKIARIKKNLTQEAIADKIGITPQHVSNIETGNASVSLTTLVAIANTLT 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S + + V+ + K L ++ + Sbjct: 61 VSVNDLLCDTVLISKAVFEKEAKELFEDCNEYEIRVL 97 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD AIG R+K R K ++Q +G+ +SN E G + I Sbjct: 1 MELDYKAIGKRIKIARIKKNLTQEAIADKIGITPQHVSNIETGNASVSLTTLVAIANTLT 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 ++ + +I ++ Sbjct: 61 VSVNDLLCDTVLISKAVFEK 80 >gi|182434296|ref|YP_001822015.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326774809|ref|ZP_08234074.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178462812|dbj|BAG17332.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655142|gb|EGE39988.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 199 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 PE+ VG R++ +RK T ++ S ++ E+G S+ L + Sbjct: 9 PELESVLSGVGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGGRRPSLELMLPIARA 68 Query: 83 YEISFDWIY 91 +E+ D + Sbjct: 69 HEVPLDDLV 77 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+ +RKD+G++ G+ STLS E G P ++ I + + LD + Sbjct: 22 LRRLRKDRGVTLAALSAATGISVSTLSRLESGGRRPSLELMLPIARAHEVPLDDLVGAAP 81 Query: 175 -GDEVIVPKSI 184 GD + K I Sbjct: 82 VGDPRVRAKPI 92 >gi|312138238|ref|YP_004005574.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887577|emb|CBH46889.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 197 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ T ++A S ++ E G ++ L L Y + D + Sbjct: 15 VGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLPLARAYGVPLDELV 74 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+ +G + + G+ STLS E G+ P ++ + + LD + Sbjct: 14 AVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLPLARAYGVPLDEL 73 Query: 173 YFGDEVIVPK 182 E P+ Sbjct: 74 VGAPETGDPR 83 >gi|269838117|ref|YP_003320345.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787380|gb|ACZ39523.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 68 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++ R+ TQ ++ +N ENG S+ A L +E + + ++ Sbjct: 3 NRVREARQKQGWTQDDLGRRVGVSRQTINAIENGRYDPSLPLAFKLARVFETTIEDLFFP 62 Query: 94 EVID 97 E Sbjct: 63 EETP 66 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 38/67 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ R+ +G +Q + G+ +G+ T++ E GR P + A K+ +V + ++ ++ Sbjct: 1 MRNRVREARQKQGWTQDDLGRRVGVSRQTINAIENGRYDPSLPLAFKLARVFETTIEDLF 60 Query: 174 FGDEVIV 180 F +E V Sbjct: 61 FPEETPV 67 >gi|227514760|ref|ZP_03944809.1| bacteriophage transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086869|gb|EEI22181.1| bacteriophage transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 115 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N +Q + ++ V +E S Y L +E+S D++ Sbjct: 14 IGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTEPSSTYVTKLAELFEVSTDYLL 73 Query: 92 DGEVIDRRYEDVT 104 D E R+ V Sbjct: 74 DHERSIRQPVTVD 86 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IGAR+K +RK + +SQ GK +G+ +T++ +E RT P K+ ++ + D++ Sbjct: 13 MIGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTEPSSTYVTKLAELFEVSTDYL 72 Query: 173 YFGD-EVIVPKSIKRAKGN 190 + + P ++ A N Sbjct: 73 LDHERSIRQPVTVDLADEN 91 >gi|255102927|ref|ZP_05331904.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|296449255|ref|ZP_06891041.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296261924|gb|EFH08733.1| XRE family transcriptional regulator [Clostridium difficile NAP08] Length = 135 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K+ R + TQ+ +A N ++ +EN I + L N Y IS D + Sbjct: 2 EIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIISVIELSNLYSISLDVL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G+ + + + + + Sbjct: 62 LKGDEKMIEHLEESTNVVKSNQKMIWAI 89 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 42/84 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK+ R GM+Q + + + T+SN+E ++ P+I ++ + LD Sbjct: 1 MEIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIISVIELSNLYSISLDV 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + GDE ++ + +S++K Sbjct: 61 LLKGDEKMIEHLEESTNVVKSNQK 84 >gi|166031491|ref|ZP_02234320.1| hypothetical protein DORFOR_01188 [Dorea formicigenerans ATCC 27755] gi|166028896|gb|EDR47653.1| hypothetical protein DORFOR_01188 [Dorea formicigenerans ATCC 27755] Length = 69 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 27/69 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + R+K++R+ +Q E S + +E + + + + Y +S D Sbjct: 1 MEKLAIRLKELREERGLSQMEAGAALGVSRSTIAGYETKGREPDVHMLITMADFYNVSMD 60 Query: 89 WIYDGEVID 97 ++ + Sbjct: 61 YLVGRKDEK 69 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+++G+SQ+E G LG+ ST++ YE P++ + +D++ + Sbjct: 8 LKELREERGLSQMEAGAALGVSRSTIAGYETKGREPDVHMLITMADFYNVSMDYLVGRKD 67 Query: 178 V 178 Sbjct: 68 E 68 >gi|60683798|ref|YP_209648.1| hypothetical protein pDx14.2p11 [Bacillus mycoides] gi|60416575|emb|CAI40627.1| hypothetical protein [Bacillus mycoides] Length = 240 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 41/108 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + D+G +IK +R NN TQ+++A ++ +E G + L L N + +S D Sbjct: 19 YMDIGKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSID 78 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + + + + + + S+ + LL Sbjct: 79 SLLKEDSNLQNQIIKQSNYKRYLLIASLYIYSLITIVVIFYCLIAFLL 126 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 37/81 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++K +R M+Q + L + +S +E G+++P++ + + +D Sbjct: 19 YMDIGKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSID 78 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 + D + + IK++ + Sbjct: 79 SLLKEDSNLQNQIIKQSNYKR 99 >gi|146297100|ref|YP_001180871.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410676|gb|ABP67680.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 211 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 35/82 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ N ++ ++A + +ENG + L + + + ++ D++ Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFGVTVDYLIGRS 66 Query: 95 VIDRRYEDVTNKKRLDPYAIGA 116 E + + + + + + Sbjct: 67 EYRTVEEQFSKRTKFERFVVEN 88 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK +R++K +S+ + ++LG+ T++NYE G P KI +D Sbjct: 1 MNLFRFRLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFGVTVD 60 Query: 171 WIYFGDE--VIVPKSIKRAKGNQ 191 ++ E + + KR K + Sbjct: 61 YLIGRSEYRTVEEQFSKRTKFER 83 >gi|159038022|ref|YP_001537275.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916857|gb|ABV98284.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 191 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K R T E+A +S ++ E G S+ L + + I D + Sbjct: 11 EIGPRLKQARAQRGVTLAELAETTGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKL 70 Query: 91 YDGEVIDRRYEDVTNKK 107 + +K Sbjct: 71 VGVPQSGDPRVRLQPRK 87 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK R +G++ E + G+ STLS E G+ P ++ I + LD + + Sbjct: 16 LKQARAQRGVTLAELAETTGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKLVGVPQ 75 Query: 178 VIVPKS 183 P+ Sbjct: 76 SGDPRV 81 >gi|52143615|ref|YP_083215.1| transcriptional regulator [Bacillus cereus E33L] gi|51977084|gb|AAU18634.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 146 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 LGEQLKKLRESKGISQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDELI 62 Query: 92 DGEVIDRRY 100 G + Sbjct: 63 KGNQNIKEK 71 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 38/71 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +LK +R+ KG+SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSLGEQLKKLRESKGISQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPK 182 + G++ I K Sbjct: 61 LIKGNQNIKEK 71 >gi|312109406|ref|YP_003987722.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|311214507|gb|ADP73111.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 139 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G ++K +RK +N TQ+++A N S ++ +ENG ++ L N YE+S Sbjct: 2 KKMRKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGELLPDVQSLEKLSNLYEVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 D++ + N L Sbjct: 62 IDFLIGKHTTKKELLREMNLLYQTDRIDEKML 93 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +LK +RK +Q + + L + S +S +E G +P+++ K+ + + +D Sbjct: 4 MRKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGELLPDVQSLEKLSNLYEVSID 63 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 ++ G + ++ + N + + D+K Sbjct: 64 FLI-GKHTTKKELLR--EMNLLYQTDRIDEK 91 >gi|182624896|ref|ZP_02952675.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] gi|177909902|gb|EDT72312.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] Length = 342 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 W +K+ RK N TQ ++A N SA++ +ENG SI + + L NE S D Sbjct: 3 WTVFANNLKNYRKENKLTQDDLAKRLNVSRSAISYYENGTVEPSIYFLINLANEMNCSID 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ G D E N + D I LK Sbjct: 63 NLF-GFNRDVSIELPKNLTKEDLKPIEKELKK 93 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D LK+ RK+ ++Q + K L + S +S YE G P I + Sbjct: 1 MDWTVFANNLKNYRKENKLTQDDLAKRLNVSRSAISYYENGTVEPSIYFLINLANEMNCS 60 Query: 169 LDWIYFGD---EVIVPKSIKRAKGNQSSKKSKKD 199 +D ++ + + +PK++ + K+ KK+ Sbjct: 61 IDNLFGFNRDVSIELPKNLTKEDLKPIEKELKKE 94 >gi|153932210|ref|YP_001385236.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152928254|gb|ABS33754.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] Length = 92 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++R+ TQ+E+ N A++ +E+ SI + L N + IS D++ Sbjct: 2 FGDRLKELREEKQLTQEELGKFLNVSRQAISSYESEETEPSINNLIKLANIFNISLDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 K + I ++ Sbjct: 62 GRTKERYNLNLEDKKNKDLIIDIIKVIEK 90 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK +R++K ++Q E GK L + +S+YE T P I K+ + LD++ Sbjct: 1 MFGDRLKELREEKQLTQEELGKFLNVSRQAISSYESEETEPSINNLIKLANIFNISLDYL 60 Query: 173 YFGDEVIVPKSIKRAKG 189 + +++ K Sbjct: 61 LGRTKERYNLNLEDKKN 77 >gi|257867716|ref|ZP_05647369.1| predicted protein [Enterococcus casseliflavus EC30] gi|257874043|ref|ZP_05653696.1| predicted protein [Enterococcus casseliflavus EC10] gi|257801799|gb|EEV30702.1| predicted protein [Enterococcus casseliflavus EC30] gi|257808207|gb|EEV37029.1| predicted protein [Enterococcus casseliflavus EC10] Length = 200 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 37/83 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK+ RK TQ+E+A N SA++ +E G I + L Y++S D ++ ++ Sbjct: 7 IKERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDELFYDDI 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 NKK+ + L Sbjct: 67 DLVNKFAEDNKKKEQLKKVNKLL 89 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 44/87 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +K RK GM+Q E K L + S +SN+E GR P+I ++ Q+ + LD Sbjct: 1 MAFHQMIKERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 +++ D +V K + K + KK K Sbjct: 61 LFYDDIDLVNKFAEDNKKKEQLKKVNK 87 >gi|154503587|ref|ZP_02040647.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] gi|153795687|gb|EDN78107.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI ++RK TQ + + ++ +ENG + L L + + D+I Sbjct: 10 NRIAELRKKLGLTQTRLGEEIGVSQQTISKYENGDENIPGDMLLALSKFFRVPIDYILRK 69 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR 117 E ++ E K+ ++ Y + Sbjct: 70 EEEQQQREQNDRKEIMELYRDMDQ 93 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 109 LDPYAIG--ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D + R+ +RK G++Q G+ +G+ T+S YE G + + + Sbjct: 1 MDAWRCILVNRIAELRKKLGLTQTRLGEEIGVSQQTISKYENGDENIPGDMLLALSKFFR 60 Query: 167 KHLDWIY 173 +D+I Sbjct: 61 VPIDYIL 67 >gi|227873856|ref|ZP_03992078.1| helix-turn-helix motif protein [Oribacterium sinus F0268] gi|227840282|gb|EEJ50690.1| helix-turn-helix motif protein [Oribacterium sinus F0268] Length = 331 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK N +Q+++A + +++ +E + L L + +S D++ Sbjct: 3 LADKIIELRKKNGWSQEDLAEKLDVSRQSISKWEGAQSIPDMNKILKLSEVFSVSTDYLL 62 Query: 92 DGEVI 96 E+ Sbjct: 63 KDEIE 67 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD- 176 + +RK G SQ + + L + ++S +E ++IP++ K+ +V D++ + Sbjct: 7 IIELRKKNGWSQEDLAEKLDVSRQSISKWEGAQSIPDMNKILKLSEVFSVSTDYLLKDEI 66 Query: 177 EVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 E+ P + S K+ + +N Sbjct: 67 ELDSPGEAPKVDTESSLKEVSVSMEEAN 94 >gi|313890286|ref|ZP_07823919.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121340|gb|EFR44446.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 194 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 34/76 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ RK +Q+++A ++ +EN I + L N + +S D + Sbjct: 2 ELGEKLSSCRKKAGFSQEDLAEKIYVSRQTISNWENNRSYPDIHSLIALVNLFNLSLDQL 61 Query: 91 YDGEVIDRRYEDVTNK 106 +G++ + + + Sbjct: 62 VEGDIDEMKKIVQRDD 77 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +L S RK G SQ + + + + T+SN+E R+ P+I + + LD Sbjct: 1 MELGEKLSSCRKKAGFSQEDLAEKIYVSRQTISNWENNRSYPDIHSLIALVNLFNLSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + K ++R + ++ Sbjct: 61 LVEGDIDEMKKIVQRDDLKKFNR 83 >gi|229196060|ref|ZP_04322812.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293] gi|228587442|gb|EEK45508.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293] Length = 153 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 10 LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDELI 69 Query: 92 DGEVIDRRY 100 G + Sbjct: 70 KGNQNIKEK 78 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 39/76 (51%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 K D ++G +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ Sbjct: 3 KEGDVMSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYN 62 Query: 167 KHLDWIYFGDEVIVPK 182 LD + G++ I K Sbjct: 63 VTLDELIKGNQNIKEK 78 >gi|302335133|ref|YP_003800340.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301318973|gb|ADK67460.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 335 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R +GM+Q + ++G+ +++ +E R PE+ KI QV +D Sbjct: 1 MSFRDNLQHLRATRGMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKICQVFDCTIDD 60 Query: 172 IYFGDEVIVPKSIKRA 187 + GD KRA Sbjct: 61 LVQGDLTTRAGEPKRA 76 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 30/75 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R TQ+++A+ +V +E+ + L + ++ + D + G Sbjct: 5 DNLQHLRATRGMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKICQVFDCTIDDLVQG 64 Query: 94 EVIDRRYEDVTNKKR 108 ++ R E + Sbjct: 65 DLTTRAGEPKRAMPQ 79 >gi|154483973|ref|ZP_02026421.1| hypothetical protein EUBVEN_01681 [Eubacterium ventriosum ATCC 27560] gi|149735015|gb|EDM50901.1| hypothetical protein EUBVEN_01681 [Eubacterium ventriosum ATCC 27560] Length = 236 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++++ +RK NN +Q+++A A++ +E G I + + N ++ S D++ + Sbjct: 5 SKLQKLRKDNNLSQEQLASELCVSRQAISKWELG-TLPDINNLVKISNFFDCSLDYLMND 63 Query: 94 EVIDRRYEDVTNKKR 108 + D+ E+ +N++ Sbjct: 64 DKEDQFEEEFSNEQN 78 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++L+ +RKD +SQ + L + +S +E T+P+I KI LD+ Sbjct: 1 MTFSSKLQKLRKDNNLSQEQLASELCVSRQAISKWE-LGTLPDINNLVKISNFFDCSLDY 59 Query: 172 IYFGD------EVIVPKSIKRAKGNQSSKKSKKDKKS 202 + D E + K A K+ K+ Sbjct: 60 LMNDDKEDQFEEEFSNEQNKIANNENVGTKATAIKRH 96 >gi|312864376|ref|ZP_07724609.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100097|gb|EFQ58308.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 135 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 VG +++ R ++ TQ+E+A V+ +E G I + L N Y +S D Sbjct: 1 MMAVGQQLQSARLLSDLTQEEVADSLGVSRQTVSNWERGKTYPDIVSLIALSNLYHLSLD 60 Query: 89 WIYDGEVIDRRYEDVTNK 106 + G+ ++ + T Sbjct: 61 QLVKGDEAMVKHLEKTTD 78 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 42/84 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A+G +L+S R ++Q E LG+ T+SN+E+G+T P+I + + LD Sbjct: 1 MMAVGQQLQSARLLSDLTQEEVADSLGVSRQTVSNWERGKTYPDIVSLIALSNLYHLSLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSK 194 + GDE +V K S++ Sbjct: 61 QLVKGDEAMVKHLEKTTDLVTSNR 84 >gi|228951504|ref|ZP_04113610.1| hypothetical protein bthur0006_9230 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808211|gb|EEM54724.1| hypothetical protein bthur0006_9230 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 149 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + G Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYLSIEIIIHLSDLFGITIDELLRG 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYLSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + GDE + K I+ +K Sbjct: 61 LLRGDEELTQKVIEDSK 77 >gi|229098833|ref|ZP_04229770.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|229104994|ref|ZP_04235649.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|229117859|ref|ZP_04247222.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228665591|gb|EEL21070.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228678422|gb|EEL32644.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228684581|gb|EEL38522.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 194 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 42/110 (38%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + ++G+ I++IR+ T ++ G + ++ EN S SI + Sbjct: 4 IVVYKKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETI 63 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 N + ++ + + +K R++ + + G+ Sbjct: 64 SNFLNVPLPYLLLEQKDRLKIVKKEERKYSVYGKDEQRIEHVAEQGGLRL 113 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 KK LD IG+ ++ IR+ +G++ + + G+ +S E +T P I I Sbjct: 8 KKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFL 67 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 L ++ + + K + Sbjct: 68 NVPLPYLLLEQKDRLKIVKKEER 90 >gi|18071197|ref|NP_542206.1| hypothetical protein pRC18_p01 [Lactobacillus curvatus] gi|17986239|gb|AAL54849.1| hypothetical membrane protein [Lactobacillus curvatus] Length = 202 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R+K+ R N TQ+++A ++ +EN I + L + Y IS D + Sbjct: 2 KFGDRLKNARTELNLTQEQVANDFFITRQTISSWENEKTYPDIANLIKLSDYYHISLDIL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + R + + R + Sbjct: 62 LKEDTGMREFLEKEEVTRQIKPIYRDLI 89 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 4/79 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK+ R + ++Q + + T+S++E +T P+I K+ LD Sbjct: 1 MKFGDRLKNARTELNLTQEQVANDFFITRQTISSWENEKTYPDIANLIKLSDYYHISLDI 60 Query: 172 IYFGD----EVIVPKSIKR 186 + D E + + + R Sbjct: 61 LLKEDTGMREFLEKEEVTR 79 >gi|310829543|ref|YP_003961900.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium limosum KIST612] gi|308741277|gb|ADO38937.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium limosum KIST612] Length = 380 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 1/95 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + RI +RK +QK +A +V+ +E G I L +E+S D Sbjct: 1 MKAIQLRIGTLRKQKGISQKMLAGAIGVTPQSVSKWETGAALPDIGLLPALATFFEVSVD 60 Query: 89 WIYDGEV-IDRRYEDVTNKKRLDPYAIGARLKSIR 122 + + D YE LK R Sbjct: 61 ELLGLKSLPDDAYEPSGTGLSGYWSERMEYLKRTR 95 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 AI R+ ++RK KG+SQ +G+ ++S +E G +P+I + + +D Sbjct: 1 MKAIQLRIGTLRKQKGISQKMLAGAIGVTPQSVSKWETGAALPDIGLLPALATFFEVSVD 60 Query: 171 WIY 173 + Sbjct: 61 ELL 63 >gi|169335374|ref|ZP_02862567.1| hypothetical protein ANASTE_01786 [Anaerofustis stercorihominis DSM 17244] gi|169258112|gb|EDS72078.1| hypothetical protein ANASTE_01786 [Anaerofustis stercorihominis DSM 17244] Length = 225 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++ +RK +Q+ A ++ +E + + Y+IS D + Sbjct: 2 DLGNKLYTLRKQKGISQETAANEIGVSRQTISKWETNSSYPEFDKLVLISKLYDISLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 I+ + + K Y ++ Sbjct: 62 AGITNINNKEINYIPIKTHYEYISKRKI 89 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +L ++RK KG+SQ +G+ T+S +E + PE I ++ LD Sbjct: 1 MDLGNKLYTLRKQKGISQETAANEIGVSRQTISKWETNSSYPEFDKLVLISKLYDISLDE 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|196041265|ref|ZP_03108560.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196027973|gb|EDX66585.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 149 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELI 62 Query: 92 DGEVIDRRYEDVTNK 106 G + + + Sbjct: 63 KGNQNIKEKIHINEE 77 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 42/86 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + G++ I K + K+++ Sbjct: 61 LIKGNQNIKEKIHINEEDEDFEKENE 86 >gi|160934847|ref|ZP_02082233.1| hypothetical protein CLOLEP_03722 [Clostridium leptum DSM 753] gi|156866300|gb|EDO59672.1| hypothetical protein CLOLEP_03722 [Clostridium leptum DSM 753] Length = 96 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 42/78 (53%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G R+K++R+ ++ TQ ++A N +++++ +EN + + S + L Y +S D++ Sbjct: 4 DFGYRLKNLRQQHHLTQTQVANRLNLSKTSISGYENNVKTPSQDVLIKLAGLYRVSTDYL 63 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + + +++ Sbjct: 64 LGLDDEEMISVEGLTRQQ 81 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 32/69 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G RLK++R+ ++Q + L + +++S YE P K+ + + D+ Sbjct: 3 FDFGYRLKNLRQQHHLTQTQVANRLNLSKTSISGYENNVKTPSQDVLIKLAGLYRVSTDY 62 Query: 172 IYFGDEVIV 180 + D+ + Sbjct: 63 LLGLDDEEM 71 >gi|72161782|ref|YP_289439.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71915514|gb|AAZ55416.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 481 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 34/87 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +R+A N T E+ + S ++L ENG + L ++S + + Sbjct: 13 FGQRLRHLRRARNMTLAELGERVGRAPSQLSLLENGKREPKLSLLTALAKALDVSVEELL 72 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + RR + + + L Sbjct: 73 SRQPPSRRAQLEIALEEAQRDPLYQSL 99 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 T LD G RL+ +R+ + M+ E G+ +G S LS E G+ P++ + Sbjct: 1 MPTLPSDLDLVTFGQRLRHLRRARNMTLAELGERVGRAPSQLSLLENGKREPKLSLLTAL 60 Query: 162 KQVTKKHLDWIY 173 + ++ + Sbjct: 61 AKALDVSVEELL 72 >gi|332980703|ref|YP_004462144.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698381|gb|AEE95322.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 130 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 32/100 (32%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK +R +QKE+A + N +E G L + + +S D++ Sbjct: 7 IKQLRLEKGLSQKEIANAIGVDRTTYNKYETGKSQPDFDTVQKLADFFGVSVDYLLGRSD 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 K + + R++ + + L Sbjct: 67 TRNSDVIEEAIKDDPELERIWNMLNNREEVRVMFKKIADL 106 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K +R +KG+SQ E +G+ +T + YE G++ P+ +K+ +D+ Sbjct: 1 MLFNEIIKQLRLEKGLSQKEIANAIGVDRTTYNKYETGKSQPDFDTVQKLADFFGVSVDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + + I+ A Sbjct: 61 LLGRSDTRNSDVIEEA 76 >gi|229828089|ref|ZP_04454158.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles DSM 14600] gi|229792683|gb|EEP28797.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles DSM 14600] Length = 327 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I D+RK N +Q+E+A + +V+ +E + L L + +S D++ Sbjct: 3 LADKIIDLRKKNGWSQEELAEKLDVSRQSVSKWEGARSVPDMNKILRLSEVFAVSTDYLL 62 Query: 92 DGEVIDRRYEDVT 104 E+ +V Sbjct: 63 KDEISAPEGTNVP 75 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +RK G SQ E + L + ++S +E R++P++ ++ +V D++ DE Sbjct: 7 IIDLRKKNGWSQEELAEKLDVSRQSVSKWEGARSVPDMNKILRLSEVFAVSTDYLLK-DE 65 Query: 178 VIVPK 182 + P+ Sbjct: 66 ISAPE 70 >gi|320006892|gb|ADW01742.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 202 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +RK T ++ S ++ E+G S+ L + +E+ D + Sbjct: 21 VGPRLRRLRKDRGVTLAALSEATGISVSTLSRLESGGRRPSLELLLPIARAHEVPLDDLV 80 Query: 92 DGEVIDRRYED 102 + Sbjct: 81 GAPPVSDPRVR 91 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +RKD+G++ + G+ STLS E G P ++ I + + LD + Sbjct: 25 LRRLRKDRGVTLAALSEATGISVSTLSRLESGGRRPSLELLLPIARAHEVPLDDLVGAPP 84 Query: 178 VIVPKS 183 V P+ Sbjct: 85 VSDPRV 90 >gi|228986400|ref|ZP_04146536.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773221|gb|EEM21651.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 374 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 1/103 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + +S D + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDELI 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR-KDKGMSQIEFG 133 + RL + + + +GM + + Sbjct: 66 CYTPQMEPEDIKDLYHRLAEAFSERPFEEVMIECRGMIKKYYS 108 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNVS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + P+ IK Sbjct: 61 IDELICYTPQMEPEDIKD 78 >gi|268608967|ref|ZP_06142694.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 324 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K++R N Q+++A + +S + ++E + + N +E+S D++ Sbjct: 2 LGDILKELRNKKNLYQQDLADILSVSKSTIAMWETNKREPDLLMLKKIANYFEVSIDYLL 61 Query: 92 DG 93 Sbjct: 62 SD 63 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +R K + Q + +L + ST++ +E + P++ +KI + +D++ Sbjct: 6 LKELRNKKNLYQQDLADILSVSKSTIAMWETNKREPDLLMLKKIANYFEVSIDYLLSD 63 >gi|226325411|ref|ZP_03800929.1| hypothetical protein COPCOM_03216 [Coprococcus comes ATCC 27758] gi|225206154|gb|EEG88508.1| hypothetical protein COPCOM_03216 [Coprococcus comes ATCC 27758] Length = 135 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K+ R TQ++ A + ++ +EN I + L + Y +S D + Sbjct: 2 EIGKKLKNARIEAGLTQEKAAEKIDVSRQTISNWENEKSYPDIISVIALSDLYSVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G+ + + + Sbjct: 62 LKGDQKMAEHLEESTN 77 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 42/84 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK+ R + G++Q + + + + T+SN+E ++ P+I + + LD Sbjct: 1 MEIGKKLKNARIEAGLTQEKAAEKIDVSRQTISNWENEKSYPDIISVIALSDLYSVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + GD+ + + +S+KK Sbjct: 61 LLKGDQKMAEHLEESTNVVKSNKK 84 >gi|220909656|ref|YP_002484967.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866267|gb|ACL46606.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 239 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 15/149 (10%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST---SIRY 75 L P +W ++ I +R+ T++E A + +E G C SI Sbjct: 2 LQALPSYTNFWAEL---ILTLRQRTGWTKEEFAQRLGVSLQTIINWEQGKCQPMSRSILS 58 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 L E E + + + L + ++R G+SQ+EF L Sbjct: 59 LQQLMQELE-DAEDLLSAYFSQATLGQEPSLAHL--------ILTLRHRMGLSQVEFAAL 109 Query: 136 LGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 LG+ T+ ++E+ R P + +I+++ Sbjct: 110 LGVTFKTVISWEKERCQPNPRLMAQIERL 138 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 5/119 (4%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I +R +Q E A V +E C + R + + Sbjct: 92 ILTLRHRMGLSQVEFAALLGVTFKTVISWEKERCQPNPRLMAQIERLVQ-----QLGDRG 146 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + + L+++R+ G++Q +F LG+ T+S +E+GR P+ Sbjct: 147 TDLLQLYFPHPTVPTEPSTARLLQTLRQRLGLTQSQFAATLGVTLMTISRWEKGRGKPK 205 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 17/44 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 ++ +R+ TQ + A ++ +E G R+ + Sbjct: 169 LQTLRQRLGLTQSQFAATLGVTLMTISRWEKGRGKPKRRFMPLI 212 >gi|257876621|ref|ZP_05656274.1| predicted protein [Enterococcus casseliflavus EC20] gi|257810787|gb|EEV39607.1| predicted protein [Enterococcus casseliflavus EC20] Length = 207 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 37/83 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I++ RK TQ+E+A N SA++ +E G I + L Y++S D ++ ++ Sbjct: 7 IRERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDELFYDDI 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 NKK+ + L Sbjct: 67 DLVNKFAEDNKKKEQLKKVNKLL 89 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 44/87 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++ RK GM+Q E K L + S +SN+E GR P+I ++ Q+ + LD Sbjct: 1 MAFHQMIRERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 +++ D +V K + K + KK K Sbjct: 61 LFYDDIDLVNKFAEDNKKKEQLKKVNK 87 >gi|271969128|ref|YP_003343324.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512303|gb|ACZ90581.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 199 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG+R+K IR + +A +S ++ E G S+ L + +++ D + Sbjct: 13 QVGSRLKRIRTQRGISLSALAEATGISKSTLSRLETGQRRPSLELLLPIAQAHQVPLDEL 72 Query: 91 Y 91 Sbjct: 73 V 73 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RLK IR +G+S + G+ STLS E G+ P ++ I Q + LD + Sbjct: 16 SRLKRIRTQRGISLSALAEATGISKSTLSRLETGQRRPSLELLLPIAQAHQVPLDELVGA 75 Query: 176 DEVIVPK 182 EV P+ Sbjct: 76 PEVGDPR 82 >gi|227486708|ref|ZP_03917024.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227235296|gb|EEI85311.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 134 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K+ R TQ+E+A +++ +EN I + L + Y+IS D + Sbjct: 2 KIGDKLKNARLHKKLTQEEVAEKLFVSRQSISNWENNKTYPDIGNVIALSDLYQISLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G ++ + + + + Sbjct: 62 LKGSDNFMKHLEESTDIVKSNKKLIFFI 89 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 41/84 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK+ R K ++Q E + L + ++SN+E +T P+I + + + LD Sbjct: 1 MKIGDKLKNARLHKKLTQEEVAEKLFVSRQSISNWENNKTYPDIGNVIALSDLYQISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + G + + + +S+KK Sbjct: 61 LLKGSDNFMKHLEESTDIVKSNKK 84 >gi|225405507|ref|ZP_03760696.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme DSM 15981] gi|225042960|gb|EEG53206.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme DSM 15981] Length = 398 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I ++R+ TQ+++A + AV+ +E G I+ + + ++ D + Sbjct: 2 NIGATIVNLRREKGVTQEQLARAVGVSKPAVSKWETGQSCPDIQLLAPIARYFGVTIDAL 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA + ++R++KG++Q + + +G+ +S +E G++ P+I+ I + +D Sbjct: 1 MNIGATIVNLRREKGVTQEQLARAVGVSKPAVSKWETGQSCPDIQLLAPIARYFGVTIDA 60 Query: 172 IYFGDEVIVPKSIKR 186 + + + R Sbjct: 61 LLSFTRTLSREEADR 75 >gi|220904000|ref|YP_002479312.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868299|gb|ACL48634.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 9/137 (6%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K R++ R+ +++MA + + +ENG YA+ L + + S Sbjct: 9 LTKAFAQRLRQRREELGMHKQDMAARVGVSLTTIQKYENGQM-PKGEYAVRLADTLDCSL 67 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 DW+ G+ + RL + R G E G + ++ Sbjct: 68 DWLLAGKGAADGSGQNCGEARLVMVPMV----EARLSAGTGSFETGG--DVLRHYAFRWD 121 Query: 148 --QGRTIPEIKPARKIK 162 + + P ++ Sbjct: 122 FLRRKGNPSQMVLLRVS 138 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A RL+ R++ GM + + +G+ +T+ YE +P+ + A ++ LDW+ Sbjct: 12 AFAQRLRQRREELGMHKQDMAARVGVSLTTIQKYEN-GQMPKGEYAVRLADTLDCSLDWL 70 Query: 173 YFGD 176 G Sbjct: 71 LAGK 74 >gi|312174394|emb|CBX82641.1| HTH-type transcriptional regulator dicA Repressor protein of division inhibition gene dicA [Erwinia amylovora ATCC BAA-2158] Length = 141 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 9/137 (6%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 M + T ++ +T E + + +G R+ RKA TQ +MA+ + + A Sbjct: 1 MVIKSRTTTVKTTM---AAPVTTEEQIFMAALGKRMTGYRKACGMTQAQMALALDVSQQA 57 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 V +E G I + +S + + E + + I ++L Sbjct: 58 VQSWEAGRRRIQISVLPAVAKLLSVSLEGLLGEEADRMPRKRGPASRLEQQIEIISQLPK 117 Query: 121 IRKDKGMSQIEFGKLLG 137 R Q ++L Sbjct: 118 AR------QKMVAEMLD 128 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 4/104 (3%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 VT ++++ A+G R+ RK GM+Q + L + + ++E GR +I + Sbjct: 17 PVTTEEQIFMAALGKRMTGYRKACGMTQAQMALALDVSQQAVQSWEAGRRRIQISVLPAV 76 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ L+ + + +P R +G S + + + S P Sbjct: 77 AKLLSVSLEGLLGEEADRMP----RKRGPASRLEQQIEIISQLP 116 >gi|218898949|ref|YP_002447360.1| immunity repressor protein [Bacillus cereus G9842] gi|218543383|gb|ACK95777.1| immunity repressor protein [Bacillus cereus G9842] Length = 144 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 4/132 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQ+ +A N + ++ +ENG + S L N ++ D++ Sbjct: 4 QRLKEMRKTRKLTQQGLADKVNTTKGTISNYENGHSTPSNEMLKDLANVLGVTTDYLLGR 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E R + + + D I L+ K L + + + Sbjct: 64 EDESRVSNTLPDLNKKDTRDIARDLEKTLK----DLENSEDALMFDGEPIDEHTKEMIRI 119 Query: 154 EIKPARKIKQVT 165 ++ + ++ + Sbjct: 120 SLENSMRMAKQL 131 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 38/91 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK +RK + ++Q + T+SNYE G + P + + + V D++ Sbjct: 1 MLRQRLKEMRKTRKLTQQGLADKVNTTKGTISNYENGHSTPSNEMLKDLANVLGVTTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ + + ++ +D + + Sbjct: 61 LGREDESRVSNTLPDLNKKDTRDIARDLEKT 91 >gi|229179916|ref|ZP_04307262.1| Helix-turn-helix domain protein [Bacillus cereus 172560W] gi|228603597|gb|EEK61072.1| Helix-turn-helix domain protein [Bacillus cereus 172560W] Length = 277 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+ +A N V+ +ENG + + N +E+S D++ Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQGVSKWENGQGFPETGKLIMIGNVFEVSLDYLL 77 Query: 92 D 92 Sbjct: 78 K 78 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y K G +L +RK+KG+SQ + L +S +E G+ PE Sbjct: 1 MSTYNLGKKTKGGTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQGVSKWENGQGFPETG 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I V + LD++ +++ Sbjct: 61 KLIMIGNVFEVSLDYLLKETAEQSNENVD 89 >gi|228902888|ref|ZP_04067030.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228954646|ref|ZP_04116669.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228967431|ref|ZP_04128462.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|229048068|ref|ZP_04193643.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|229129642|ref|ZP_04258610.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|229192573|ref|ZP_04319534.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228590880|gb|EEK48738.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228653759|gb|EEL09629.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|228723312|gb|EEL74682.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|228792267|gb|EEM39838.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228804973|gb|EEM51569.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228856762|gb|EEN01280.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 194 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 42/111 (37%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + ++G+ I++IR+ T ++ G + ++ EN S SI + Sbjct: 4 IVVYKKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETI 63 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 N + ++ + + +K R++ + + G+ Sbjct: 64 SNFLNVPLPYLLLEQKDRLKIVKKEERKYSVYGKDEQRIEHVAEQGGLRLS 114 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 KK LD IG+ ++ IR+ +G++ + + G+ +S E +T P I I Sbjct: 8 KKELDFMNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFL 67 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 L ++ + + K + Sbjct: 68 NVPLPYLLLEQKDRLKIVKKEER 90 >gi|118477277|ref|YP_894428.1| hypothetical protein BALH_1588 [Bacillus thuringiensis str. Al Hakam] gi|196045052|ref|ZP_03112285.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228933140|ref|ZP_04095997.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229184045|ref|ZP_04311258.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1] gi|118416502|gb|ABK84921.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|196024054|gb|EDX62728.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228599428|gb|EEK57035.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1] gi|228826497|gb|EEM72273.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 149 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDELI 62 Query: 92 DGEVIDRRYEDVTNK 106 G + + + Sbjct: 63 KGNQNIKEKIHINEE 77 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 42/86 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + G++ I K + K+++ Sbjct: 61 LIKGNQNIKEKIHINEEDEDFEKENE 86 >gi|218281920|ref|ZP_03488252.1| hypothetical protein EUBIFOR_00820 [Eubacterium biforme DSM 3989] gi|218217063|gb|EEC90601.1| hypothetical protein EUBIFOR_00820 [Eubacterium biforme DSM 3989] Length = 237 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 14/132 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V IK R N TQ E V+ +ENG ++ + + N Y +S D + Sbjct: 3 VAEMIKKTRTEANMTQGEYGAKFGVSRQTVSSWENGRSLPDLQMLIDICNTYHVSLDKLL 62 Query: 92 DG-----EVIDRRYEDVTNKKRLDP-------YAIGARLKSIRKDKGMSQ--IEFGKLLG 137 + E ID + + + + ++ M+Q + LG Sbjct: 63 NEDKEFVEKIDFYNKYKKAIRLVGMCLLAGLLIFAIVFINWKITERNMNQAFEMNAEKLG 122 Query: 138 MPNSTLSNYEQG 149 L E+ Sbjct: 123 FVKGELYELEKD 134 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R + M+Q E+G G+ T+S++E GR++P+++ I LD Sbjct: 1 MTVAEMIKKTRTEANMTQGEYGAKFGVSRQTVSSWENGRSLPDLQMLIDICNTYHVSLDK 60 Query: 172 IYFGDEVIVPK 182 + D+ V K Sbjct: 61 LLNEDKEFVEK 71 >gi|325695326|gb|EGD37226.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|332365308|gb|EGJ43071.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 168 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 38/85 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 + + V ++ D Y Sbjct: 62 LLEDSNKPEIKPVLSEDEKDRYYKE 86 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E IK + K+ KS Sbjct: 61 LLL--EDSNKPEIKPVLSEDEKDRYYKEVKS 89 >gi|319654646|ref|ZP_08008727.1| hypothetical protein HMPREF1013_05349 [Bacillus sp. 2_A_57_CT2] gi|317393712|gb|EFV74469.1| hypothetical protein HMPREF1013_05349 [Bacillus sp. 2_A_57_CT2] Length = 113 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 30/75 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R +N TQ+++A +E L +++S D++ Sbjct: 2 LGDRLKKLRNDHNWTQEDVARKLELSRGTYAHYEINKRQPDYDTLKKLSEIFDVSIDYLI 61 Query: 92 DGEVIDRRYEDVTNK 106 G +++ + Sbjct: 62 TGNKYSSSEDEMWKE 76 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R D +Q + + L + T ++YE + P+ +K+ ++ +D++ G++ Sbjct: 6 LKKLRNDHNWTQEDVARKLELSRGTYAHYEINKRQPDYDTLKKLSEIFDVSIDYLITGNK 65 Query: 178 VIVPKS 183 + Sbjct: 66 YSSSED 71 >gi|261251841|ref|ZP_05944415.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] gi|260938714|gb|EEX94702.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] Length = 185 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++G I +RK + +Q+E+A A SA++ ENG S S+ + N + +S Sbjct: 3 NQEIGKNIVLLRKEHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLS 62 Query: 89 WIYDGEVI 96 + E Sbjct: 63 EFFTFEQP 70 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + +RK+ G+SQ E + G+ +S +S+ E G+ P + +KI V Sbjct: 1 MDNQEIGKNIVLLRKEHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLS 60 Query: 169 LDWIYFGDEVIVPKS 183 L + ++ + Sbjct: 61 LSEFFTFEQPQSEEV 75 >gi|169335433|ref|ZP_02862626.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis DSM 17244] gi|169258171|gb|EDS72137.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis DSM 17244] Length = 275 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 38/76 (50%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +GT I +RK N TQKE+A N A++ +E G+ I + L + +++ + Sbjct: 3 YKKIGTFICSLRKEKNLTQKELADKLNITNKAISKWERGISCPDISLLIPLSDILDVTTN 62 Query: 89 WIYDGEVIDRRYEDVT 104 I +GE + + Sbjct: 63 EILNGEREEISDINED 78 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + S+RK+K ++Q E L + N +S +E+G + P+I + + Sbjct: 1 MNYKKIGTFICSLRKEKNLTQKELADKLNITNKAISKWERGISCPDISLLIPLSDILDVT 60 Query: 169 LDWIYFGD-------EVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + I G+ + + +K+ + S+K KK N Sbjct: 61 TNEILNGEREEISDINEDIDRKVKKTLTYMVNISSEKSKKYLN 103 >gi|260768699|ref|ZP_05877633.1| putrescine utilization regulator [Vibrio furnissii CIP 102972] gi|260616729|gb|EEX41914.1| putrescine utilization regulator [Vibrio furnissii CIP 102972] Length = 184 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I +RK + +Q+E+A AN SA++ EN S S+ + + +S + Sbjct: 6 IGQKIAQLRKEHKLSQRELAEKANITHSAISSIENNKVSPSVSSLHKIVKVFNLSLSEFF 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 + V ++L Sbjct: 66 TQDQEIDDRPVVIAPEQL 83 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +IG ++ +RK+ +SQ E + + +S +S+ E + P + KI +V Sbjct: 1 METDSIGQKIAQLRKEHKLSQRELAEKANITHSAISSIENNKVSPSVSSLHKIVKVFNLS 60 Query: 169 LDWIYFGDEVIVPKSI 184 L + D+ I + + Sbjct: 61 LSEFFTQDQEIDDRPV 76 >gi|160881041|ref|YP_001560009.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429707|gb|ABX43270.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 200 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG IK +RK + TQ+++A N V+ +ENG + L + + Sbjct: 4 EKVGKLIKQLRKEHGYTQQQVANALNISNKTVSKWENGFGCPDVSLLGELSIVLGVDLEQ 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + G++ D N KR+ Y Sbjct: 64 MLKGKL-RMNQFDNGNMKRVKFYVCPFC 90 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G +K +RK+ G +Q + L + N T+S +E G P++ ++ V Sbjct: 1 MDCEKVGKLIKQLRKEHGYTQQQVANALNISNKTVSKWENGFGCPDVSLLGELSIVLGVD 60 Query: 169 LDWIYFGD 176 L+ + G Sbjct: 61 LEQMLKGK 68 >gi|300940028|ref|ZP_07154650.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300455126|gb|EFK18619.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 118 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD+G R+ +RK Q+E A ++ ENG + L + E+ + +W Sbjct: 3 KDIGERVISVRKKAGLNQREFAARLGISNGGISQIENGKAMPGGEFLLKMHQEFNVDVNW 62 Query: 90 IYDGEVID 97 + G D Sbjct: 63 LLTGMSTD 70 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RK G++Q EF LG+ N +S E G+ +P + K+ Q ++W+ G Sbjct: 13 RKKAGLNQREFAARLGISNGGISQIENGKAMPGGEFLLKMHQEFNVDVNWLLTG 66 >gi|255284008|ref|ZP_05348563.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265461|gb|EET58666.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 112 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 32/69 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ + TQ E++ + +A + +EN S L + + Y + +++ Sbjct: 6 LGKKLRALRERRHLTQAEVSALLHIERAAYSNYENDKRIPSFETLLLIADFYGVPVEYLI 65 Query: 92 DGEVIDRRY 100 + + Sbjct: 66 RSDYAETPR 74 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + ++G +L+++R+ + ++Q E LL + + SNYE + IP + I Sbjct: 1 MKNNSLGKKLRALRERRHLTQAEVSALLHIERAAYSNYENDKRIPSFETLLLIADFYGVP 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 ++++ D P+ K A Sbjct: 61 VEYLIRSDYAETPRHRKHA 79 >gi|70733674|ref|YP_257314.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68347973|gb|AAY95579.1| DNA-binding protein, putative [Pseudomonas fluorescens Pf-5] Length = 120 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++ +RK N +Q E+ A + + +E G S L + ++S D++ Sbjct: 8 FAERLRSLRKQKNLSQTELGQLAELHYTHIGRYERGTSRPSGDTLKRLADALDVSSDYLL 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 +G D +++ L + ++ Sbjct: 68 EGASDDAAKAKFEDRELLRQFQEVEQI 94 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+S+RK K +SQ E G+L + + + YE+G + P +++ D++ Sbjct: 8 FAERLRSLRKQKNLSQTELGQLAELHYTHIGRYERGTSRPSGDTLKRLADALDVSSDYLL 67 Query: 174 FG--DEVIVPKSIKRA---KGNQSSKKSKKDKK 201 G D+ K R + + + ++DKK Sbjct: 68 EGASDDAAKAKFEDRELLRQFQEVEQIPEEDKK 100 >gi|313899841|ref|ZP_07833344.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312955456|gb|EFR37121.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 259 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 1/89 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + IRK +Q+E+A + A++ +ENG + + L +S D + G Sbjct: 5 DNLYRIRKEKGMSQEELAALCDVSRQAISKWENGTANPDMENLKTLSRSLRVSIDELL-G 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 I E V K+ + + K R Sbjct: 64 NKIPLEKEVVKEKEVIYVHNRYTYEKRYR 92 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L IRK+KGMSQ E L + +S +E G P+++ + + + + +D Sbjct: 1 MEFKDNLYRIRKEKGMSQEELAALCDVSRQAISKWENGTANPDMENLKTLSRSLRVSIDE 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|317054764|ref|YP_004103231.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447033|gb|ADU20597.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 198 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK +R +Q+ +A + ++ +EN + L L + + +S D + Sbjct: 2 ELSKTIKRLRTEKGWSQETLAEKSYVSRQTISNWENEKNYPDVHSLLILSDLFGVSLDEL 61 Query: 91 YDGEVIDRRYE 101 G+V + Sbjct: 62 IKGDVETMKNT 72 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K +R +KG SQ + + T+SN+E + P++ + + LD Sbjct: 1 MELSKTIKRLRTEKGWSQETLAEKSYVSRQTISNWENEKNYPDVHSLLILSDLFGVSLDE 60 Query: 172 IYFGDEVIVPKSI 184 + GD + +I Sbjct: 61 LIKGDVETMKNTI 73 >gi|210632695|ref|ZP_03297520.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] gi|210159405|gb|EEA90376.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] Length = 320 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +R A N TQ+++A+ AV+ +E+G + + + L +E+ D + G Sbjct: 13 DNLLYLRDARNMTQEQLAMLLGVTRQAVSKWESGASTPDMDRLVRLCEIFEVDLDDLIRG 72 Query: 94 EVIDRRYED 102 +V R + Sbjct: 73 DVTARPVDQ 81 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K D + L +R + M+Q + LLG+ +S +E G + P++ ++ ++ Sbjct: 3 DKERDTMSFRDNLLYLRDARNMTQEQLAMLLGVTRQAVSKWESGASTPDMDRLVRLCEIF 62 Query: 166 KKHLDWIYFGDEVIVP 181 + LD + GD P Sbjct: 63 EVDLDDLIRGDVTARP 78 >gi|83951416|ref|ZP_00960148.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] gi|83836422|gb|EAP75719.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] Length = 219 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 31/98 (31%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E+ + +G I+++RKA T +A ++ E S+ + Sbjct: 20 EMSRVDPGLGEEIRNLRKARRLTLGALAEATGLSTGFISQIERAQNRPSVTALFRISRAL 79 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S W + G + + + ++ Sbjct: 80 GVSVSWFFPGPEVPDSGAPDPDSPDQNTADRSIIVRRA 117 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 38/87 (43%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +G+++ + T + +G ++++RK + ++ + G+ +S E+ + Sbjct: 6 EGQLLTAPFNMDTLEMSRVDPGLGEEIRNLRKARRLTLGALAEATGLSTGFISQIERAQN 65 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEV 178 P + +I + + W + G EV Sbjct: 66 RPSVTALFRISRALGVSVSWFFPGPEV 92 >gi|296330703|ref|ZP_06873180.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673960|ref|YP_003865632.1| Phage PBSZ transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152167|gb|EFG93039.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412204|gb|ADM37323.1| Phage PBSZ transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 113 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R+K +R TQ+E+A + + +ENG L + ++++ D++ Sbjct: 2 IGSRLKSLRGKR--TQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLL 59 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 G+ + ++ Y Sbjct: 60 TGKDKKSDDDMFSDPDLQVAYRDMQ 84 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG+RLKS+R + +Q E +G+ + S+YE GR+ P+ +K+ + D++ Sbjct: 1 MIGSRLKSLRGKR--TQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYL 58 Query: 173 YFGDE 177 G + Sbjct: 59 LTGKD 63 >gi|325689190|gb|EGD31197.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 168 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 38/85 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 + + V ++ D Y Sbjct: 62 LLEDSDKPEIKPVLSEDEKDRYYKE 86 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E IK + K+ KS Sbjct: 61 LLL--EDSDKPEIKPVLSEDEKDRYYKEVKS 89 >gi|309778211|ref|ZP_07673144.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914045|gb|EFP59852.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 135 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K+ R + TQ+ +A N ++ +EN I + L N Y IS D + Sbjct: 2 EIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIISVIELSNLYSISLDVL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G+ + + + + + Sbjct: 62 LKGDEKMIEHLEESTNVVKSNKKMIWAI 89 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 42/84 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK+ R GM+Q + + + T+SN+E ++ P+I ++ + LD Sbjct: 1 MEIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIISVIELSNLYSISLDV 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + GDE ++ + +S+KK Sbjct: 61 LLKGDEKMIEHLEESTNVVKSNKK 84 >gi|228902129|ref|ZP_04066293.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 4222] gi|228857555|gb|EEN02051.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 4222] Length = 262 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK +Q+ +A AV+ +ENG + + +E+S D++ Sbjct: 2 EFGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDYL 61 Query: 91 YD 92 Sbjct: 62 LK 63 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I +V + LD+ Sbjct: 1 MEFGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIK 185 + ++++ Sbjct: 61 LLKETAEQSNENVE 74 >gi|228966936|ref|ZP_04127974.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] gi|228792670|gb|EEM40234.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] Length = 118 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 31/77 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI ++RK TQ+++ + ++ +E G S L + + + D+++ Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYLF 63 Query: 92 DGEVIDRRYEDVTNKKR 108 + + + Sbjct: 64 GKSDNSIKSSNNIKEIF 80 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 38/73 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+ +RK++ ++Q + G+ +G+ T+S YE+G IP + K+ +D Sbjct: 1 MNIIGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPID 60 Query: 171 WIYFGDEVIVPKS 183 +++ + + S Sbjct: 61 YLFGKSDNSIKSS 73 >gi|291529806|emb|CBK95391.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 122 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G R+K R N TQ+ +A S ++ +EN S S+ L E +S D + Sbjct: 6 DFGARLKKYRNEKNITQERIAKILGVSNSMISKYENNTASPSLDSLCTLSKELCVSIDEL 65 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + + D Sbjct: 66 CGLQQSGTVSLIGLTDGQADC 86 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 PY GARLK R +K ++Q K+LG+ NS +S YE P + + + +D Sbjct: 4 PYDFGARLKKYRNEKNITQERIAKILGVSNSMISKYENNTASPSLDSLCTLSKELCVSID 63 Query: 171 WI 172 + Sbjct: 64 EL 65 >gi|268608708|ref|ZP_06142435.1| hypothetical protein RflaF_04317 [Ruminococcus flavefaciens FD-1] Length = 322 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 31/65 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ ++RK + +Q+E+A +V+ +E + + L + +++S D++ Sbjct: 3 FADKLIELRKKSGMSQEELAEKLGVSRQSVSKWEGAQSTPDLNRILEISKIFDVSTDYLL 62 Query: 92 DGEVI 96 E+ Sbjct: 63 KDEIE 67 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 39/82 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L +RK GMSQ E + LG+ ++S +E ++ P++ +I ++ D+ Sbjct: 1 MIFADKLIELRKKSGMSQEELAEKLGVSRQSVSKWEGAQSTPDLNRILEISKIFDVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + + + +++ +++ Sbjct: 61 LLKDEIEAGKEISEKSISDETE 82 >gi|331088392|ref|ZP_08337309.1| hypothetical protein HMPREF1025_00892 [Lachnospiraceae bacterium 3_1_46FAA] gi|330408267|gb|EGG87747.1| hypothetical protein HMPREF1025_00892 [Lachnospiraceae bacterium 3_1_46FAA] Length = 336 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I + RK N +Q+E+A AV+ +E+ ++ L + + +S D++ Sbjct: 3 LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFGVSTDYLL 62 Query: 92 DGEVIDRRYED 102 E+ Sbjct: 63 KDEMQAENITY 73 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + RK G SQ E LG+ +S +E +P+++ ++ ++ D++ + Sbjct: 7 ITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFGVSTDYLLKDE- 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + ++I + +S + K N Sbjct: 66 -MQAENITYHESTESYAEPLKKVTMEN 91 >gi|254000130|ref|YP_003052193.1| XRE family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313202093|ref|YP_004040751.1| XRE family transcriptional regulator [Methylovorus sp. MP688] gi|253986809|gb|ACT51666.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4] gi|312441409|gb|ADQ85515.1| transcriptional regulator, XRE family [Methylovorus sp. MP688] Length = 215 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 39/98 (39%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 ++ S ++ + R + +G I+ IR + T +++ A+ ++ ENG+ Sbjct: 5 SNTASADIAPVMSDSDARSLGRHLGNVIRQIRLQHGLTIADISERASISRGMLSKIENGL 64 Query: 69 CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 STS+ + N ++ ++ I + Sbjct: 65 VSTSLETLEQIANALGVTLSRLFRDYNIQTSSAQLVKH 102 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 ++ IR G++ + + + LS E G ++ +I L ++ Sbjct: 30 NVIRQIRLQHGLTIADISERASISRGMLSKIENGLVSTSLETLEQIANALGVTLSRLFRD 89 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKK 198 + + + +K +G + ++ K Sbjct: 90 YNIQTSSAQLVKHGQGMEVVRRGTK 114 >gi|327472198|gb|EGF17635.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 168 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 38/85 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 + + V ++ D Y Sbjct: 62 LLEDSDKPEIKPVLSEDEKDRYYKE 86 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E IK + K+ KS Sbjct: 61 LLL--EDSDKPEIKPVLSEDEKDRYYKEVKS 89 >gi|296394145|ref|YP_003659029.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181292|gb|ADG98198.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 258 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 21/153 (13%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + RQ G ++ R A+ T E+A + AV +E G+ S + + Sbjct: 1 MATTKRQLD---GVALRRARIASGLTTAELAHKLHVSVEAVYHWETGITQPSAKNLPKVA 57 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 S + L +R G++QI+ + LG Sbjct: 58 AAVNSSIADLCGNPDRATT------------------LADLRLAAGLTQIDLAEKLGTNK 99 Query: 141 STLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 S +S +E+G++ + + + ++ Sbjct: 100 SMISVWERGKSAVPNEKVVQYATALGVSVGDVF 132 >gi|260433557|ref|ZP_05787528.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260417385|gb|EEX10644.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 207 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA N T ++ A A S ++ ENG S + L EIS + Sbjct: 26 DLGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKLATGLEISVPQL 85 Query: 91 YDGEVIDRRYEDVTNKKR 108 + D+ + K Sbjct: 86 FTPPERDQVIGRMAVTKM 103 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ +RK + + + G+ STLS E G+ P +K+ + + ++ Sbjct: 29 ARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKLATGLEISVPQLFTP 88 Query: 176 DE 177 E Sbjct: 89 PE 90 >gi|169335030|ref|ZP_02862223.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] gi|169257768|gb|EDS71734.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] Length = 310 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 7/131 (5%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++++RK +N +Q+++A + AV+ +ENG + L L + + ++ D + G Sbjct: 9 NLQNLRKIHNLSQEQLAEKLDVSRQAVSKWENGTSYPEMDKLLILCDIFSLNMDELVKG- 67 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 I K L A K I G+ I LLG+ ++S+ Sbjct: 68 NISLDDNSFKEDKALYENAQNKFSKMI--TLGVFLI----LLGVTIMSMSDGLINGGNFF 121 Query: 155 IKPARKIKQVT 165 I I + Sbjct: 122 INTFSSISTIL 132 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D L+++RK +SQ + + L + +S +E G + PE+ + + + Sbjct: 1 MDKMNFNTNLQNLRKIHNLSQEQLAEKLDVSRQAVSKWENGTSYPEMDKLLILCDIFSLN 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 +D + G+ + S K K + ++K K Sbjct: 61 MDELVKGNISLDDNSFKEDKALYENAQNKFSK 92 >gi|154482431|ref|ZP_02024879.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] gi|149736708|gb|EDM52594.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] Length = 293 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK RK +Q++MA A+ +ENG + I + + + ++IS D + Sbjct: 5 EQIKHYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIADLFQISVDELLSN 64 Query: 94 EVIDRRYED 102 E +++ D Sbjct: 65 EKSEKKQSD 73 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 33/72 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K RK G+SQ + + +G+ ++ +E G P+I I + + +D Sbjct: 1 MTLEEQIKHYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIADLFQISVDE 60 Query: 172 IYFGDEVIVPKS 183 + ++ +S Sbjct: 61 LLSNEKSEKKQS 72 >gi|291556294|emb|CBL33411.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 380 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K R TQ+++A + AV+ +ENG I + + +EI+ D + Sbjct: 15 KLGENLKKFRLQRELTQEQLADVLSVSAQAVSRWENGTTYPDITLLPTIASYFEITLDEL 74 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 E + +L+ + Sbjct: 75 MGMESWRSEEQLKELLGQLEENGSKGLIYE 104 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 N +G LK R + ++Q + +L + +S +E G T P+I Sbjct: 2 NSTEENTMLNLGLKLGENLKKFRLQRELTQEQLADVLSVSAQAVSRWENGTTYPDITLLP 61 Query: 160 KIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 I + LD + + + +K G SK Sbjct: 62 TIASYFEITLDELMGMESWRSEEQLKELLGQLEENGSK 99 >gi|159039188|ref|YP_001538441.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918023|gb|ABV99450.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 196 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ + VG R++ +R+ T E++ S ++ E+G ++ L L Sbjct: 1 MDGDLDHALEAVGPRLRALRRQRETTLTELSANTGVSVSTLSRLESGARRPTLELLLPLA 60 Query: 81 NEYEISFDWIY 91 Y ++ D + Sbjct: 61 RAYGVTLDELV 71 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+ + + E G+ STLS E G P ++ + + LD + Sbjct: 11 AVGPRLRALRRQRETTLTELSANTGVSVSTLSRLESGARRPTLELLLPLARAYGVTLDEL 70 Query: 173 Y 173 Sbjct: 71 V 71 >gi|307323870|ref|ZP_07603079.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890319|gb|EFN21296.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 201 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 29/68 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ + VG R++ +R+ T +++ S ++ E+G ++ L L Y Sbjct: 8 DLTEVLTAVGPRLRALRRTRGTTLAQLSETTGISLSTLSRLESGQRKPTLELLLPLAKAY 67 Query: 84 EISFDWIY 91 + D + Sbjct: 68 GVQLDELV 75 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+ +G + + + G+ STLS E G+ P ++ + + LD + Sbjct: 15 AVGPRLRALRRTRGTTLAQLSETTGISLSTLSRLESGQRKPTLELLLPLAKAYGVQLDEL 74 Query: 173 Y----FGDEVIVPKSIKR 186 GD + P+ R Sbjct: 75 VGAPATGDPRVHPRPFTR 92 >gi|253574140|ref|ZP_04851482.1| SOS-response transcriptional repressor [Paenibacillus sp. oral taxon 786 str. D14] gi|251846617|gb|EES74623.1| SOS-response transcriptional repressor [Paenibacillus sp. oral taxon 786 str. D14] Length = 290 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G RIK R T +E+ SA++ E G S + + + Sbjct: 1 MADLKKALGERIKKCRLEKGMTLRELGSQVGMTSSALSKVEKGSVSITSENLFAISEAFG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKK 107 +S DW+ G+ + E + Sbjct: 61 VSVDWLLTGKEAQFKDEGYDTNE 83 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 33/71 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+K R +KGM+ E G +GM +S LS E+G + I + +DW+ Sbjct: 7 ALGERIKKCRLEKGMTLRELGSQVGMTSSALSKVEKGSVSITSENLFAISEAFGVSVDWL 66 Query: 173 YFGDEVIVPKS 183 G E Sbjct: 67 LTGKEAQFKDE 77 >gi|18309709|ref|NP_561643.1| hypothetical protein CPE0727 [Clostridium perfringens str. 13] gi|18144386|dbj|BAB80433.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 268 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +RK +Q+++A AV+ +E+G + + L Y ++ D++ Sbjct: 2 KLAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYL 61 Query: 91 YD 92 Sbjct: 62 VK 63 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 35/64 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L+ +RK +G+SQ + + LG+ +S +E G+++P++ + ++ +D+ Sbjct: 1 MKLAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDY 60 Query: 172 IYFG 175 + Sbjct: 61 LVKE 64 >gi|328948780|ref|YP_004366117.1| hypothetical protein Tresu_1938 [Treponema succinifaciens DSM 2489] gi|328449104|gb|AEB14820.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 151 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 25 IRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + Q ++ G +I+ +R TQ+E+A N A++ +E + + + Sbjct: 1 MNQEQTNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNEPDLNMLKKICFL 60 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ D + + K++ + Y + L Sbjct: 61 FGVNMDDFAKEVITKMETYEKKEKRQFNKYDMAIGL 96 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 7/95 (7%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + G +++ +R GM+Q E L + LSN+E+ P++ +KI + Sbjct: 2 NQEQTNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNEPDLNMLKKICFLF 61 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++D + I + + + +K + +K Sbjct: 62 GVNMDDF-------AKEVITKMETYEKKEKRQFNK 89 >gi|312126619|ref|YP_003991493.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776638|gb|ADQ06124.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 118 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 33/72 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +K +G +++++RK TQ+++A + ++ +E G S+ L Y Sbjct: 2 KEEVYKKIGEKLRELRKQRGFTQEQVAKYLGITQEQLSYYETGAREISVATLQALARLYG 61 Query: 85 ISFDWIYDGEVI 96 ++++ + Sbjct: 62 CDYNYLLSDDEQ 73 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K IG +L+ +RK +G +Q + K LG+ LS YE G + + + ++ Sbjct: 1 MKEEVYKKIGEKLRELRKQRGFTQEQVAKYLGITQEQLSYYETGAREISVATLQALARLY 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 +++ DE + + + ++ + + Sbjct: 61 GCDYNYLLSDDEQLNTQVAINFRADEIADE 90 >gi|292557941|gb|ADE30942.1| Helix-turn-helix type 3 [Streptococcus suis GZ1] Length = 149 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 25 IRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + Q ++ G +I+ +R TQ+E+A N A++ +E + + + Sbjct: 1 MNQEQTNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNEPDLNMLKKICFL 60 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ D + + K++ + Y + L Sbjct: 61 FGVNMDDFAKEVITKMETYEKKEKRQFNKYDMAIGL 96 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 7/95 (7%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + G +++ +R GM+Q E L + LSN+E+ P++ +KI + Sbjct: 2 NQEQTNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNEPDLNMLKKICFLF 61 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++D + I + + + +K + +K Sbjct: 62 GVNMDDF-------AKEVITKMETYEKKEKRQFNK 89 >gi|16799151|ref|NP_469419.1| hypothetical protein lin0073 [Listeria innocua Clip11262] gi|16412493|emb|CAC95306.1| lin0073 [Listeria innocua Clip11262] Length = 158 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 4/96 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK +Q ++A V +E G + L + + +S D++ Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 94 EVIDRRYE----DVTNKKRLDPYAIGARLKSIRKDK 125 + + +N D I A ++ RK+ Sbjct: 64 DDNNLADTIAAHIDSNASEEDMKEILAYIEEKRKEH 99 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 40/87 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL +RK KG SQ + LG ++NYEQG P+ + KI + D++ Sbjct: 1 MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 D+ + +I + +S++ K+ Sbjct: 61 LGRDDNNLADTIAAHIDSNASEEDMKE 87 >gi|317502031|ref|ZP_07960214.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316896573|gb|EFV18661.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 293 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK RK +Q++MA A+ +ENG + I + + N ++IS D + Sbjct: 5 EQIKYYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIANLFQISVDELLSN 64 Query: 94 EVIDRRYED 102 E +++ + Sbjct: 65 EKSEKKQSN 73 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 33/72 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K RK G+SQ + + +G+ ++ +E G P+I I + + +D Sbjct: 1 MTLEEQIKYYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIANLFQISVDE 60 Query: 172 IYFGDEVIVPKS 183 + ++ +S Sbjct: 61 LLSNEKSEKKQS 72 >gi|291279912|ref|YP_003496747.1| XRE family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754614|dbj|BAI80991.1| transcriptional regulator, XRE family [Deferribacter desulfuricans SSM1] Length = 178 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++IRK T ++++ +S ++ ENG S SI + I+ +++ Sbjct: 4 GAKLREIRKRLGMTLEDVSQKTGFTKSFISQIENGKNSPSIASLKKICFALGITISELFE 63 Query: 93 GE-----VIDRRYEDVTNKKRLDPYAIGARL 118 E V K LD Y + ++L Sbjct: 64 DERNVVSKFSYDDYKVLKNKNLDIYFLASKL 94 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + GA+L+ IRK GM+ + + G S +S E G+ P I +KI + Sbjct: 1 MSYGAKLREIRKRLGMTLEDVSQKTGFTKSFISQIENGKNSPSIASLKKICFALGITISE 60 Query: 172 IYFGDEVIVPK 182 ++ + +V K Sbjct: 61 LFEDERNVVSK 71 >gi|167771688|ref|ZP_02443741.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] gi|167666328|gb|EDS10458.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] Length = 110 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI+ IRKA+ +Q+ +A + ++ E G S+ + L + ++ D Sbjct: 5 EIGQRIRKIRKAHGLSQESLAERVGISNTHMSHIETGNTKLSLPVLVALADALDVCTDDF 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 R + ++ ++K I Sbjct: 65 LHKRSTFVRSASIDAIIQILNACTTLQIKII 95 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D Y IG R++ IRK G+SQ + +G+ N+ +S+ E G T + + Sbjct: 1 MDYYEIGQRIRKIRKAHGLSQESLAERVGISNTHMSHIETGNTKLSLPVLVALADALDVC 60 Query: 169 LDWIY 173 D Sbjct: 61 TDDFL 65 >gi|271966030|ref|YP_003340226.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509205|gb|ACZ87483.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 197 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + VG R++ +R+ T ++A ES ++ E+G ++ L L Y+ Sbjct: 1 MDEVLDAVGPRLRALRRHRGITLADLAATTGVSESTLSRLESGQRRATLELLLPLARTYD 60 Query: 85 ISFDWIY 91 + D + Sbjct: 61 VPLDDLV 67 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+ +G++ + G+ STLS E G+ ++ + + LD + Sbjct: 7 AVGPRLRALRRHRGITLADLAATTGVSESTLSRLESGQRRATLELLLPLARTYDVPLDDL 66 Query: 173 Y----FGDEVIVPKSIKR 186 GD I K I R Sbjct: 67 VGAPRTGDPRIHLKPILR 84 >gi|853809|emb|CAA60798.1| unnamed protein product [Clostridium perfringens] Length = 265 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +RK +Q+++A AV+ +E+G + + L Y ++ D++ Sbjct: 2 KLAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYL 61 Query: 91 YD 92 Sbjct: 62 VK 63 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 39/92 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L+ +RK +G+SQ + + LG+ +S +E G+++P++ + ++ +D+ Sbjct: 1 MKLAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + K + K + Sbjct: 61 LVKETYEFEGSQEKEISNTGKQYGENLENKET 92 >gi|302561948|ref|ZP_07314290.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302479566|gb|EFL42659.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 191 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R++ IRK T ++ S ++ E+G+ S+ L + +++ D + Sbjct: 9 EVGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRKPSLELLLPIAQAHQVPLDEL 68 Query: 91 Y 91 Sbjct: 69 V 69 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IRK++ ++ + G+ STLS E G P ++ I Q + LD + Sbjct: 14 LRRIRKEREVTLAALSEATGISVSTLSRLESGLRKPSLELLLPIAQAHQVPLDELV 69 >gi|283783001|ref|YP_003373755.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|298253582|ref|ZP_06977372.1| transcriptional regulator [Gardnerella vaginalis 5-1] gi|283441430|gb|ADB13896.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|297532349|gb|EFH71237.1| transcriptional regulator [Gardnerella vaginalis 5-1] Length = 328 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK N +Q+E+A AV+ +E + + L + +S D + Sbjct: 3 LADKILELRKQNGWSQEELADKLGVSRQAVSKWEGAQSIPDMERIIALSRLFGVSTDLLV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 E+ + A Sbjct: 63 KDEIDVMGKNVNAGENACQEEAGVRM 88 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 33/67 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +RK G SQ E LG+ +S +E ++IP+++ + ++ D + + Sbjct: 7 ILELRKQNGWSQEELADKLGVSRQAVSKWEGAQSIPDMERIIALSRLFGVSTDLLVKDEI 66 Query: 178 VIVPKSI 184 ++ K++ Sbjct: 67 DVMGKNV 73 >gi|330719156|ref|ZP_08313756.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 251 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 2/103 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K R NKTQ +MA + ++ +EN S+ + L + + S D Sbjct: 2 KLGQKLKQKRIQLNKTQAQMATDLHVTRQTISHWENDDTYPSLDMLVMLSDYLDFSLDSA 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 E D + K+ Y LK + G+ I Sbjct: 62 LKEEGTDMVNNIIQELKKGKRY--QKILKWLGLGIGIFMIFIA 102 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +LK R +Q + L + T+S++E T P + + LD Sbjct: 1 MKLGQKLKQKRIQLNKTQAQMATDLHVTRQTISHWENDDTYPSLDMLVMLSDYLDFSLDS 60 Query: 172 IYF--GDEVIVPKSIKRAKGNQSSKKSK 197 G +++ + KG + K K Sbjct: 61 ALKEEGTDMVNNIIQELKKGKRYQKILK 88 >gi|296269837|ref|YP_003652469.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092624|gb|ADG88576.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 490 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K +RK T ++A + S ++L ENG + L + + + Sbjct: 21 FGQRLKHLRKQRGLTLADLAERVGRAPSQLSLLENGKREPKLSLLKSLATALNVPVEELL 80 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +RR + + + RL Sbjct: 81 RRQAPNRRAQLEIALEEAQRDPLYMRL 107 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 LD A G RLK +RK +G++ + + +G S LS E G+ P++ + + Sbjct: 15 ELDLLAFGQRLKHLRKQRGLTLADLAERVGRAPSQLSLLENGKREPKLSLLKSLATALNV 74 Query: 168 HLDWIY 173 ++ + Sbjct: 75 PVEELL 80 >gi|134102747|ref|YP_001108408.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915370|emb|CAM05483.1| transcriptional regulator, XRE family with cupin sensor [Saccharopolyspora erythraea NRRL 2338] Length = 187 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 32/84 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ IR+ T ++ S ++ E+G S+ L + +++ D + Sbjct: 5 VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQVPLDELV 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIG 115 + + +R D + Sbjct: 65 GAPPVGDPRVRLKPIRRGDMTVVP 88 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+ IR+ +G + K G+ STLS E G+ P ++ I Q + LD + Sbjct: 4 AVGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQVPLDEL 63 Query: 173 YF----GDEVIVPKSIKRAKG 189 GD + K I+R Sbjct: 64 VGAPPVGDPRVRLKPIRRGDM 84 >gi|323463235|gb|ADX75388.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 190 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG +I+ RK +Q +A + ++ +EN + + + L + + +S D + Sbjct: 2 DVGNQIRIYRKERQLSQMALAEKIDVSTQTISNWENERTYPDLYHLIVLSSLFNVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPY 112 G+V++ + ++ + +D Y Sbjct: 62 VKGDVVEMK--NIIDHYNMDRY 81 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 40/83 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ RK++ +SQ+ + + + T+SN+E RT P++ + + LD Sbjct: 1 MDVGNQIRIYRKERQLSQMALAEKIDVSTQTISNWENERTYPDLYHLIVLSSLFNVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD V + I ++ K Sbjct: 61 LVKGDVVEMKNIIDHYNMDRYGK 83 >gi|302872413|ref|YP_003841049.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575272|gb|ADL43063.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 285 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ N ++ ++A + +ENG + L + + + ++ D++ Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFNVTVDYLIGRS 66 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 E ++ + + + LK + +K + Sbjct: 67 EYRTVEEQISKRSKFERTVG-ESLKEVIMNKKLE 99 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK +R++K +S+ + ++LG+ T++NYE G P KI +D Sbjct: 1 MNLFRFRLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFNVTVD 60 Query: 171 WIYFGDE--VIVPKSIKRAKGNQSSKKSKKD 199 ++ E + + KR+K ++ +S K+ Sbjct: 61 YLIGRSEYRTVEEQISKRSKFERTVGESLKE 91 >gi|291534827|emb|CBL07939.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis M50/1] Length = 382 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 8/131 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK R Q E A AV+ +E G+ S+ + ++S D + Sbjct: 7 MAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGLSCPSVENLCVISEILDVSIDTLI 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 GE D + +S R + G +T+ E Sbjct: 67 -GENSDSEKMMIGIDGGGTKTEFVLFSESGRILNRIVLD------GCNPNTVGMEEAMNI 119 Query: 152 -IPEIKPARKI 161 I KI Sbjct: 120 LQLGIDTLMKI 130 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 34/77 (44%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 D + +K+ R +G++Q EF + LG+ +S +E G + P ++ I ++ Sbjct: 1 MFDIMTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGLSCPSVENLCVISEILDV 60 Query: 168 HLDWIYFGDEVIVPKSI 184 +D + + I Sbjct: 61 SIDTLIGENSDSEKMMI 77 >gi|317473654|ref|ZP_07932943.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp. 3_2_56FAA] gi|316898944|gb|EFV20969.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp. 3_2_56FAA] Length = 239 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +RK +Q+E+ N V+ +E G + + + L +++S D + Sbjct: 5 ENLNRLRKEKGWSQEELGNRLNVSRQTVSKWELGSTTPELNKLMELSRIFQVSIDELV 62 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L +RK+KG SQ E G L + T+S +E G T PE+ ++ ++ + +D Sbjct: 1 MEFYENLNRLRKEKGWSQEELGNRLNVSRQTVSKWELGSTTPELNKLMELSRIFQVSIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + K + N Sbjct: 61 LVGSSNAPAEKEVVYVNVN 79 >gi|313898421|ref|ZP_07831958.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956803|gb|EFR38434.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 220 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 + RK N TQ+E+A + +E G S+ Y + L + ++ D + + Sbjct: 8 EYRKKNMMTQEELADRLGVSRQTITKWEKGTILPSLEYLIDLSRLFGVTIDHLVKDDDCI 67 Query: 98 RRYEDVTNKKRL 109 + L Sbjct: 68 CESSHQVHTTAL 79 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 RK M+Q E LG+ T++ +E+G +P ++ + ++ +D + D+ I Sbjct: 8 EYRKKNMMTQEELADRLGVSRQTITKWEKGTILPSLEYLIDLSRLFGVTIDHLVKDDDCI 67 Query: 180 VPKS 183 S Sbjct: 68 CESS 71 >gi|313114704|ref|ZP_07800206.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622929|gb|EFQ06382.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 231 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK +RK TQK+ A ++ ++ +E G+ + + + + + Y +S D++ Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K +RK++G++Q + + LG+ + LS+YE+G + ++ D+ Sbjct: 1 MEFNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|300119183|ref|ZP_07056880.1| MerR family transcriptional regulator [Bacillus cereus SJ1] gi|298723403|gb|EFI64148.1| MerR family transcriptional regulator [Bacillus cereus SJ1] Length = 181 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 38/99 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKVVKKGERKYSVYGKDEQRIEHVAEQGGLRL 100 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + + KG + KD++ Sbjct: 61 LLLEQKDRLKVV---KKGERKYSVYGKDEQ 87 >gi|182440719|ref|YP_001828438.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469235|dbj|BAG23755.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 205 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 36/90 (40%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + +T E + V RI+ +R A + +E+A A +S ++ ENG ++ + Sbjct: 1 MPMTQEDGELDSLVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVT 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 L + S D + + D + Sbjct: 61 LARALDTSLDQLVETASDDVVSNPTVDGAH 90 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + STLS E GR + + + LD + Sbjct: 15 RKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARALDTSLDQLVE 74 Query: 175 --GDEVIVPKSIKRAKGN 190 D+V+ ++ A G Sbjct: 75 TASDDVVSNPTVDGAHGQ 92 >gi|325680803|ref|ZP_08160341.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107583|gb|EGC01861.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 217 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%) Query: 16 EYTLIITPEIRQYWKD---VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 ++ +I E R D +G I RK TQ ++A + AV+ +E G C Sbjct: 2 KFCAMIGTERRIRRMDQIMIGKFIAACRKEKKMTQAQLAEKLGISDRAVSKWETGKCMPD 61 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 L + IS + +++G + + + K R + Sbjct: 62 ASLMPELCEQLGISINDLFNGRRVTMENYKEAAEAAMLQLKENEE-KKNRMMLDLE 116 Score = 74.6 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 49/102 (48%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 +R+D IG + + RK+K M+Q + + LG+ + +S +E G+ +P+ ++ Sbjct: 9 TERRIRRMDQIMIGKFIAACRKEKKMTQAQLAEKLGISDRAVSKWETGKCMPDASLMPEL 68 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + ++ ++ G V + + A+ K ++KK+ Sbjct: 69 CEQLGISINDLFNGRRVTMENYKEAAEAAMLQLKENEEKKNR 110 >gi|228910198|ref|ZP_04074017.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228849481|gb|EEM94316.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 194 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 42/111 (37%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + ++G+ I++IR+ T ++ G + ++ EN S SI + Sbjct: 4 IVVYKKELDFMNIGSAIREIRQRRGITIAQICKGTGLSKGFMSQVENNKTSPSISTLETI 63 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 N + ++ + + +K R++ + + G+ Sbjct: 64 SNFLNVPLPYLLLEQKDRLKIVKKEERKYSVYGKDEQRIEHVAEQGGLRLS 114 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 KK LD IG+ ++ IR+ +G++ + K G+ +S E +T P I I Sbjct: 8 KKELDFMNIGSAIREIRQRRGITIAQICKGTGLSKGFMSQVENNKTSPSISTLETISNFL 67 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 L ++ + + K + Sbjct: 68 NVPLPYLLLEQKDRLKIVKKEER 90 >gi|228920891|ref|ZP_04084230.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838822|gb|EEM84124.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 126 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ +G RI+ +R+ NN +QK ++ + ++ +E G + + + ++++ Sbjct: 2 KFMNILGDRIRYLRELNNLSQKRLSDALGLTNTQLSRYERGERNPEPETIKLIADYFDVT 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 D++ G + Y + K LD +G K I Sbjct: 62 TDYL-HGRTNNINYTNPDFKNILDDAELGLWFKDI 95 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ +R+ +SQ LG+ N+ LS YE+G PE + + I D++ Sbjct: 11 IRYLRELNNLSQKRLSDALGLTNTQLSRYERGERNPEPETIKLIADYFDVTTDYL 65 >gi|256377105|ref|YP_003100765.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921408|gb|ACU36919.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 200 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ T E+++ ES ++ E+G ++ + L L Y++ D + Sbjct: 12 VGPRLRALRRDRGVTLAELSLRTGVSESTLSRLESGQRRATLEFLLLLARAYDVPLDDLV 71 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+D+G++ E G+ STLS E G+ ++ + + LD + Sbjct: 11 AVGPRLRALRRDRGVTLAELSLRTGVSESTLSRLESGQRRATLEFLLLLARAYDVPLDDL 70 Query: 173 Y----FGDEVIVPKSIKR 186 GD I K I R Sbjct: 71 VGAPRTGDPRIHLKPITR 88 >gi|182624148|ref|ZP_02951935.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] gi|177910764|gb|EDT73124.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] Length = 141 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K++RK N +Q+++A N A++ +E+G I + LR + +S D + Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDELI 62 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 43/84 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK +RK+K +SQ + K L + +S +E G+ P+I ++++ LD Sbjct: 1 MGFDNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + +E V ++ + + +SS+K Sbjct: 61 LIMEEEEKVEENNSKQELIESSEK 84 >gi|168209872|ref|ZP_02635497.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] gi|170712005|gb|EDT24187.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] Length = 141 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K++RK N +Q+++A N A++ +E+G I + LR + +S D + Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDELI 62 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 43/84 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK +RK+K +SQ + K L + +S +E G+ P+I ++++ LD Sbjct: 1 MGFNNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + +E V ++ + + +SS+K Sbjct: 61 LIMEEEEKVEENNSKQELIESSEK 84 >gi|332522147|ref|ZP_08398399.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332313411|gb|EGJ26396.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 138 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 35/82 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K+ R N +Q +A A++ +ENG + + + L ++++ D + Sbjct: 3 KFAEQLKNYRLKKNYSQDALADRLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLDQL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPY 112 G+ + + + + + D Sbjct: 63 VRGKELASSHNNENDSEEDDNL 84 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK+ R K SQ L + +S +E G + P+++ K+ ++ LD Sbjct: 1 MNKFAEQLKNYRLKKNYSQDALADRLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSS 193 + G E+ + + + Sbjct: 61 QLVRGKELASSHNNENDSEEDDN 83 >gi|167896507|ref|ZP_02483909.1| DNA-binding protein [Burkholderia pseudomallei 7894] Length = 202 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 + T +P VG +I+ +R T +++ A +S ++ E + +I Sbjct: 8 RRTTAPASPATSATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIA 67 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 A L N IS D ++ Sbjct: 68 VAWRLTNALGISLDELFAQPKAPETIRVDGPH 99 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 27 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFA- 85 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 86 -QPKAPETIR 94 >gi|167039360|ref|YP_001662345.1| XRE family transcriptional regulator [Thermoanaerobacter sp. X514] gi|300913999|ref|ZP_07131316.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307725316|ref|YP_003905067.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X513] gi|166853600|gb|ABY92009.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X514] gi|300890684|gb|EFK85829.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307582377|gb|ADN55776.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513] Length = 137 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +R+ QK++A SA +E G S+ L + + +S D++ Sbjct: 12 QRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFFNVSIDYLLGR 71 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR 117 I +++T DP + Sbjct: 72 TDIRSPVDEITEAVSDDPELLEFW 95 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ +R++KG+ Q + K+LG+ S YEQG+ P ++ +K+ +D++ Sbjct: 10 FSQRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFFNVSIDYLL 69 Query: 174 FGDEVIVP 181 ++ P Sbjct: 70 GRTDIRSP 77 >gi|28211763|ref|NP_782707.1| transcriptional regulator [Clostridium tetani E88] gi|28204205|gb|AAO36644.1| transcriptional regulator [Clostridium tetani E88] Length = 136 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK N TQ+E+AI S V ++E S + + + +++S D++ Sbjct: 5 LGKKIKSLRKDNKITQEELAIKIGVSTSMVGMYETDARKPSYEVLIKIADYFKVSLDYLL 64 Query: 92 DGEVIDRRYEDVTN 105 N Sbjct: 65 RETEYKTYIGTKEN 78 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++KS+RKD ++Q E +G+ S + YE P + KI K LD++ Sbjct: 7 KKIKSLRKDNKITQEELAIKIGVSTSMVGMYETDARKPSYEVLIKIADYFKVSLDYLLRE 66 Query: 176 DE 177 E Sbjct: 67 TE 68 >gi|116334693|ref|YP_796220.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100040|gb|ABJ65189.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 120 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 27/71 (38%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R+ +Q+++A +V+ +E G + + + L +S D + G Sbjct: 8 QLSQLRRQAGLSQEQLASQVFVTRQSVSKWEQGETTPDLDTLISLATVLGVSLDELVSGR 67 Query: 95 VIDRRYEDVTN 105 + Sbjct: 68 STATHQTETET 78 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 35/91 (38%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +L +R+ G+SQ + + + ++S +EQG T P++ + V LD + Sbjct: 5 FNTQLSQLRRQAGLSQEQLASQVFVTRQSVSKWEQGETTPDLDTLISLATVLGVSLDELV 64 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 G ++ +Q S N Sbjct: 65 SGRSTATHQTETETTFDQPEPAGATTGHSMN 95 >gi|295108696|emb|CBL22649.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 336 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I + RK N +Q+E+A AV+ +E+ ++ L + + +S D++ Sbjct: 3 LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFGVSTDYLL 62 Query: 92 DGEVIDRRYED 102 E+ Sbjct: 63 KDEMKAENITY 73 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + RK G SQ E LG+ +S +E +P+++ ++ ++ D++ + Sbjct: 7 ITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFGVSTDYLLKDE- 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + ++I + +S + K N Sbjct: 66 -MKAENITYHESTESYAEPLKKVTMEN 91 >gi|291531478|emb|CBK97063.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 380 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 33/90 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K R TQ+++A AV+ +ENG I + + +EI+ D + Sbjct: 15 KLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGTTYPDITLLPTIVSYFEITLDEL 74 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 E + +L+ + Sbjct: 75 MGMENWRSEEQLKELLGQLEENGSKGLIYE 104 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 N +G LK R + ++Q + +LG+ +S +E G T P+I Sbjct: 2 NSTEENTMLNLGLKLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGTTYPDITLLP 61 Query: 160 KIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 I + LD + + + +K G SK Sbjct: 62 TIVSYFEITLDELMGMENWRSEEQLKELLGQLEENGSK 99 >gi|330467774|ref|YP_004405517.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810745|gb|AEB44917.1| transcriptional regulator, XRE family protein [Verrucosispora maris AB-18-032] Length = 178 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++D+R+ ++ T +++A A+ + ++ ENG S+ L ++ S ++ Sbjct: 2 LGDRLRDLRQQHSMTLRQLATAADVSPALLSQIENGATDPSLSTLRKLAQVFDTSIAELF 61 Query: 92 -DGEVIDRRYEDVTNKKRLDPYAIGARLKSI---RKDKGMSQIEFG 133 + E N+ RL + + R D + Q Sbjct: 62 SEPEAPAVHLSRAGNRSRLTAPPGQITYERLTPGRGDLEVLQAHLA 107 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RL+ +R+ M+ + + + LS E G T P + RK+ QV + + Sbjct: 1 MLGDRLRDLRQQHSMTLRQLATAADVSPALLSQIENGATDPSLSTLRKLAQVFDTSIAEL 60 Query: 173 YFGDEVIVPKSIKRAKGNQS 192 + E P GN+S Sbjct: 61 FS--EPEAPAVHLSRAGNRS 78 >gi|300172531|ref|YP_003771696.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886909|emb|CBL90877.1| Transcriptional regulator, helix-turn-helix XRE-family [Leuconostoc gasicomitatum LMG 18811] Length = 132 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 39/100 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N +Q+++A AV+ +E+G + + + L ++ S D + G Sbjct: 7 NQLKKYRSDLNMSQEDVADKLFVSRQAVSRWESGDATPDLTNLIKLTEIFKCSLDSLVLG 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + R + +R+ K M+ +F Sbjct: 67 IEETPSKSGTPEIDSSEFTFDPRRGEYVRRRKNMNFWDFA 106 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +LK R D MSQ + L + +S +E G P++ K+ ++ K LD Sbjct: 3 NVLPNQLKKYRSDLNMSQEDVADKLFVSRQAVSRWESGDATPDLTNLIKLTEIFKCSLDS 62 Query: 172 IYFGDEVIVPKS 183 + G E KS Sbjct: 63 LVLGIEETPSKS 74 >gi|229086928|ref|ZP_04219086.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] gi|228696371|gb|EEL49198.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] Length = 181 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 41/110 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 + + +K +++ + + G+ +G P Sbjct: 62 LLEQKDRMKVVKKEERKYSVYGKDEQKIEHVAEQGGLRLSLVEIPIGFPK 111 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + E + + + + S K ++K + Sbjct: 61 LLL--EQKDRMKVVKKEERKYSVYGKDEQKIEH 91 >gi|323481312|gb|ADX80751.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 306 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 20/175 (11%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + G +K +RK TQK+++ +SA+ +ENG S + L + Sbjct: 5 FENNSGNILKSLRKEQKLTQKKLSELTGISQSALVKYENGTRGISKNVDIALSKALNV-- 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 D + EV + Y + R+ R +S +G+ + LS Sbjct: 63 DSLLKNEVENLSY-------------MINRIIEYRDLNNLSNKNLANKIGISEALLSYIL 109 Query: 148 QGRTIPEIKPARKIKQVT----KKHL-DWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 GR + RKI + L D G + P K GN+ K Sbjct: 110 NGRRKLSKEIQRKIALFLLNDGNESLIDTKLGGASLNFPSIDKNLMGNRIKTIRK 164 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 66/152 (43%), Gaps = 7/152 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQL--ESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G RIK IRK ++ ++ ++ +N +ENG+ + + + + Sbjct: 155 MGNRIKTIRKNRGESLEKFGQNFTCPARKNVINRWENGVNIPDVERLMNVAYLGGTTVPA 214 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGA---RLKSIRKDKGMSQIEFGKLL--GMPNSTLS 144 + GE ++ ++ + A R + IR D + +I FGKL + ++ Sbjct: 215 LLYGEGYKNMLKEGKKIRKFEKLAPSMLGVRFRKIRSDYRLERINFGKLFSPSITKWSID 274 Query: 145 NYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 YE G+ +P + + + K L+++ +G+ Sbjct: 275 KYENGKDVPNTERIIQYAYIGKVSLEFLIYGN 306 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 5/145 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI + R NN + K +A E+ ++ NG S + + + Sbjct: 78 NRIIEYRDLNNLSNKNLANKIGISEALLSYILNGRRKLSKEIQRKIALFL---LNDGNES 134 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP--NSTLSNYEQGRT 151 + + N +D +G R+K+IRK++G S +FG+ P + ++ +E G Sbjct: 135 LIDTKLGGASLNFPSIDKNLMGNRIKTIRKNRGESLEKFGQNFTCPARKNVINRWENGVN 194 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGD 176 IP+++ + + + + +G+ Sbjct: 195 IPDVERLMNVAYLGGTTVPALLYGE 219 >gi|254555955|ref|YP_003062372.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308179947|ref|YP_003924075.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044882|gb|ACT61675.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308045438|gb|ADN97981.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 183 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++IK+ R+ + +Q+ +A + ++ +E G + + L + +S D + Sbjct: 5 IGSKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFAVSTDELL 64 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+++K R+ SQ + L + T+S +E G++ P+++ + ++ D Sbjct: 3 IVIGSKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFAVSTDE 62 Query: 172 IY 173 + Sbjct: 63 LL 64 >gi|229015370|ref|ZP_04172387.1| hypothetical protein bmyco0001_57050 [Bacillus mycoides DSM 2048] gi|228745926|gb|EEL95912.1| hypothetical protein bmyco0001_57050 [Bacillus mycoides DSM 2048] Length = 240 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + D+G +IK +R NN TQ+++A ++ +E G + L L N + +S D Sbjct: 19 YMDIGKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSID 78 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + + + S+ Sbjct: 79 SLLKEDSNLQSQIIKQSNYKRYLLIASLYIYSL 111 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 37/81 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++K +R M+Q + L + +S +E G+++P++ + + +D Sbjct: 19 YMDIGKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSID 78 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 + D + + IK++ + Sbjct: 79 SLLKEDSNLQSQIIKQSNYKR 99 >gi|261366132|ref|ZP_05979015.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282572066|gb|EFB77601.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 116 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 7 LETSLKSLQEY--TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 + +++L++Y T + E + + +G ++ R TQ+ +A AV+ + Sbjct: 26 VYLLIRALRKYLATAPVRQEKARQARTLGEVLRQHRTDCRMTQEFVAESLGVSRQAVSKW 85 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYD 92 E+G S + L Y + + + Sbjct: 86 ESGKSDPSTTNLMALARLYGLPPEELLR 113 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Query: 89 WIYDGEVIDR-RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 ++ + V +K +G L+ R D M+Q + LG+ +S +E Sbjct: 27 YLLIRALRKYLATAPVRQEKARQARTLGEVLRQHRTDCRMTQEFVAESLGVSRQAVSKWE 86 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 G++ P + ++ + + E Sbjct: 87 SGKSDPSTTNLMALARLYGLPPEELLREAE 116 >gi|170016495|ref|YP_001727414.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803352|gb|ACA81970.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 131 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 4/94 (4%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG- 93 ++K +R +Q+++A A++ +E+G + + + L E S D + G Sbjct: 8 QLKRMRTERGLSQEDIANQLFVSRQAISRWESGDATPDLTNLVKLAEILETSLDSLVLGT 67 Query: 94 ---EVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 E + + + + G ++ Sbjct: 68 VQQEETAVDVDKIDKHEFMFDPRTGKYIRRRMNF 101 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 36/77 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +LK +R ++G+SQ + L + +S +E G P++ K+ ++ + LD + Sbjct: 6 PTQLKRMRTERGLSQEDIANQLFVSRQAISRWESGDATPDLTNLVKLAEILETSLDSLVL 65 Query: 175 GDEVIVPKSIKRAKGNQ 191 G ++ K ++ Sbjct: 66 GTVQQEETAVDVDKIDK 82 >gi|89069978|ref|ZP_01157310.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] gi|89044426|gb|EAR50557.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] Length = 201 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RK + T ++ A A S ++ ENG S + L +IS + Sbjct: 19 DLGARVRELRKERDWTLEQAARKAGLARSTLSKIENGQMSPTYDALKKLATGLDISIPQL 78 Query: 91 YDGEVIDRRYEDVT 104 + + ++ Sbjct: 79 FTPPSTGQVNGRMS 92 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK++ + + + G+ STLS E G+ P +K+ + ++ Sbjct: 22 ARVRELRKERDWTLEQAARKAGLARSTLSKIENGQMSPTYDALKKLATGLDISIPQLFT 80 >gi|30264432|ref|NP_846809.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47529886|ref|YP_021235.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187254|ref|YP_030506.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49478619|ref|YP_038413.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141145|ref|YP_085685.1| transcriptional regulator [Bacillus cereus E33L] gi|65321730|ref|ZP_00394689.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|190566894|ref|ZP_03019810.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196034394|ref|ZP_03101803.1| DNA-binding protein [Bacillus cereus W] gi|196039275|ref|ZP_03106581.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196044751|ref|ZP_03111985.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218905557|ref|YP_002453391.1| DNA-binding protein [Bacillus cereus AH820] gi|225866344|ref|YP_002751722.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227817141|ref|YP_002817150.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228916995|ref|ZP_04080555.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935683|ref|ZP_04098496.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948076|ref|ZP_04110360.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093433|ref|ZP_04224536.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|229123903|ref|ZP_04253095.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|229186602|ref|ZP_04313763.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|229602882|ref|YP_002868651.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254721950|ref|ZP_05183739.1| MerR family transcriptional regulator [Bacillus anthracis str. A1055] gi|254736465|ref|ZP_05194171.1| MerR family transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254750941|ref|ZP_05202980.1| MerR family transcriptional regulator [Bacillus anthracis str. Vollum] gi|254757730|ref|ZP_05209757.1| MerR family transcriptional regulator [Bacillus anthracis str. Australia 94] gi|301055871|ref|YP_003794082.1| XRE family transcriptional regulator [Bacillus anthracis CI] gi|30259090|gb|AAP28295.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47505034|gb|AAT33710.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181181|gb|AAT56557.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49330175|gb|AAT60821.1| probable transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974614|gb|AAU16164.1| probable transcriptional regulator [Bacillus cereus E33L] gi|190561885|gb|EDV15854.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195992936|gb|EDX56895.1| DNA-binding protein [Bacillus cereus W] gi|196024239|gb|EDX62912.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196029902|gb|EDX68503.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218537657|gb|ACK90055.1| DNA-binding protein [Bacillus cereus AH820] gi|225788250|gb|ACO28467.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227003894|gb|ACP13637.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228596861|gb|EEK54520.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|228659205|gb|EEL14853.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|228689904|gb|EEL43708.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|228811434|gb|EEM57771.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823921|gb|EEM69740.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842602|gb|EEM87690.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267290|gb|ACQ48927.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300378040|gb|ADK06944.1| transcriptional regulator, XRE family [Bacillus cereus biovar anthracis str. CI] gi|324328264|gb|ADY23524.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 181 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 38/99 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 100 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKVVKKVER 77 >gi|291441034|ref|ZP_06580424.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291343929|gb|EFE70885.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 190 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 31/84 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 DVG R++ IRK T ++ S ++ E+G+ S+ L + ++ Sbjct: 3 TESVLADVGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQ 62 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKR 108 + D + + +R Sbjct: 63 VPLDELVGAPPVGDPRVRSKPIER 86 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+ IRK++ ++ + G+ STLS E G P ++ I Q + LD + Sbjct: 14 LRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELVGAPP 73 Query: 175 -GDEVIVPKSIKR 186 GD + K I+R Sbjct: 74 VGDPRVRSKPIER 86 >gi|328955940|ref|YP_004373273.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456264|gb|AEB07458.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 218 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++R+ +Q+E+A A++ +E S + L Y +S D + Sbjct: 7 QRLAELRRTKGYSQEELAQRLGLSRQAISKWERAESSPDTDNLIALARLYSVSLDELV 64 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 RL +R+ KG SQ E + LG+ +S +E+ + P+ + ++ LD + Sbjct: 7 QRLAELRRTKGYSQEELAQRLGLSRQAISKWERAESSPDTDNLIALARLYSVSLDELVGA 66 Query: 174 -FGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 FG A +++++ +D++ Sbjct: 67 PFGGTAEDLVEEAAAATRETTRERARDEE 95 >gi|257868272|ref|ZP_05647925.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874455|ref|ZP_05654108.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|325568146|ref|ZP_08144587.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|257802386|gb|EEV31258.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808619|gb|EEV37441.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|325158347|gb|EGC70498.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 110 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 14/108 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R N+TQ+++A +A + FEN + L +++S D++ Sbjct: 2 LGERLRTLRLRTNQTQQQIADQLGITRAAYSHFENDRNEPDGETIVKLAEIFQVSTDFLL 61 Query: 92 DGEVIDRRYED--------------VTNKKRLDPYAIGARLKSIRKDK 125 +V VT+++ D + +K K Sbjct: 62 GRQVPAGFTPPSAKVQTVAAHIDDDVTDEQMEDILSYIEFIKQRHAQK 109 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RL+++R +Q + LG+ + S++E R P+ + K+ ++ + D++ Sbjct: 1 MLGERLRTLRLRTNQTQQQIADQLGITRAAYSHFENDRNEPDGETIVKLAEIFQVSTDFL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|254511223|ref|ZP_05123290.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534934|gb|EEE37922.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 208 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA N T + A A S ++ ENG S + L EIS + Sbjct: 26 DLGARVRELRKARNWTLEHAASQAGLARSTLSKIENGQMSPTFDALKKLATGLEISVPQL 85 Query: 91 YDGEVIDRRYEDVTNKKR 108 + D+ + K Sbjct: 86 FTPPQRDQVIGRMAVTKM 103 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 D K L+P +GAR++ +RK + + G+ STLS E G+ P +K Sbjct: 14 RDNGAKTELEPVDLGARVRELRKARNWTLEHAASQAGLARSTLSKIENGQMSPTFDALKK 73 Query: 161 IKQVTKKHLDWIYF 174 + + + ++ Sbjct: 74 LATGLEISVPQLFT 87 >gi|167766444|ref|ZP_02438497.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] gi|167711853|gb|EDS22432.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] Length = 260 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 5/101 (4%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G + ++RK N TQK++A + V+ +E G+ ++ + + + +++ Sbjct: 13 NEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVT 72 Query: 89 WIYDGEVIDRRYEDVTNKKRL-----DPYAIGARLKSIRKD 124 + GE ID + T + A+ + RK+ Sbjct: 73 ELLRGEKIDTQKNIDTKEVEELVVGSLDMAVRNSIHQHRKN 113 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 37/72 (51%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK+K ++Q + + L + + T+S +E+G ++P + I + + + G+++ Sbjct: 22 ELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELLRGEKID 81 Query: 180 VPKSIKRAKGNQ 191 K+I + + Sbjct: 82 TQKNIDTKEVEE 93 >gi|327466846|gb|EGF12364.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 194 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 40/102 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +RKA +QK +A+ N + +N +ENG + + + +++S D++ Sbjct: 83 ERLKKLRKAAGMSQKNLALKLNTSQQNINYWENGQRNPKREKLIETADFFDVSVDYLLGN 142 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + K ++ + F ++ Sbjct: 143 TDEKKPVLETAQILFRKTVDDFNLTKEQQEQFKIDIDNFIEM 184 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK +RK GMSQ L ++ +E G+ P+ + + +D Sbjct: 78 YLMFPERLKKLRKAAGMSQKNLALKLNTSQQNINYWENGQRNPKREKLIETADFFDVSVD 137 Query: 171 WIYFGDEVIVP 181 ++ + P Sbjct: 138 YLLGNTDEKKP 148 >gi|160893483|ref|ZP_02074268.1| hypothetical protein CLOL250_01034 [Clostridium sp. L2-50] gi|156864878|gb|EDO58309.1| hypothetical protein CLOL250_01034 [Clostridium sp. L2-50] Length = 122 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +G RI IR ANN TQ ++A + + E G S S+ + L + + Sbjct: 8 MENLYAKIGQRIVQIRHANNLTQYQLAEMLDISVKHCSAIERGKSSLSLEKMIDLCDIFN 67 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPY 112 I D++ G ++ Sbjct: 68 IDLDYLIRGVQKTDDIPSYIPHTVVEIM 95 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 33/89 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ IR ++Q + ++L + S E+G++ ++ + + LD++ G Sbjct: 17 QRIVQIRHANNLTQYQLAEMLDISVKHCSAIERGKSSLSLEKMIDLCDIFNIDLDYLIRG 76 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + S ++K + Sbjct: 77 VQKTDDIPSYIPHTVVEIMTSDDEEKKQH 105 >gi|309800668|ref|ZP_07694811.1| HTH-type transcriptional regulator xre [Streptococcus infantis SK1302] gi|308115743|gb|EFO53276.1| HTH-type transcriptional regulator xre [Streptococcus infantis SK1302] Length = 111 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+IR N TQKE+A + +E G+ S L + + +S D++ Sbjct: 5 DRLKEIRLNNKLTQKEVANHFQTSPQSYAQWEKGLRKPSAENLQKLADFFNVSTDYLLGK 64 Query: 94 EVIDRRYEDVTNKKRLDP 111 + D+ +D Sbjct: 65 TDLPEPDSDIDLDTAIDN 82 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK IR + ++Q E + + +E+G P + +K+ D+ Sbjct: 1 MEFKDRLKEIRLNNKLTQKEVANHFQTSPQSYAQWEKGLRKPSAENLQKLADFFNVSTDY 60 Query: 172 IYFGDEVIVPKS 183 + ++ P S Sbjct: 61 LLGKTDLPEPDS 72 >gi|242372616|ref|ZP_04818190.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349671|gb|EES41272.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 189 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +IK R+ + +Q+ +A ++ +EN I L + N + +S D + Sbjct: 2 DISNQIKKFRQRDGYSQEFLAEKMFVSRQTISNWENNKSYPDIHNLLMMCNLFNVSLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G+V K L+ + + Sbjct: 62 VKGDVEKLELTRDK--KELNFWTWMMII 87 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R+ G SQ + + + T+SN+E ++ P+I + + LD Sbjct: 1 MDISNQIKKFRQRDGYSQEFLAEKMFVSRQTISNWENNKSYPDIHNLLMMCNLFNVSLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + GD + + + + N Sbjct: 61 LVKGDVEKLELTRDKKELN 79 >gi|240139328|ref|YP_002963803.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240009300|gb|ACS40526.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 198 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 31/69 (44%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E R K +G +I+ +R+ + + ++A A + ++ ENG S S+ + + Sbjct: 12 EERPLEKALGYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSLASINAIASAL 71 Query: 84 EISFDWIYD 92 + ++ Sbjct: 72 NVPITGLFT 80 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G +++ +R+++ +S + G+ +S E G P + I + + Sbjct: 19 ALGYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSLASINAIASALNVPITGL 78 Query: 173 YF-GDEVIVPKSIKRAKGNQSSKKSKK 198 + +E +KR +G ++ K Sbjct: 79 FTAFEETRDCSHVKRGQGVPIERRGIK 105 >gi|330718468|ref|ZP_08313068.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 260 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK +R TQ+E+A + V+ +E G S+ L + +SF+ I GE Sbjct: 7 IKRMRLEKGLTQQELAESIHVSRQTVSTWETGKNYPSLEVLRSLSLLFNVSFEQIIFGEK 66 Query: 96 IDRRYEDVTN 105 N Sbjct: 67 PTMADNKEVN 76 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 36/74 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K +R +KG++Q E + + + T+S +E G+ P ++ R + + + Sbjct: 1 MGFEQDIKRMRLEKGLTQQELAESIHVSRQTVSTWETGKNYPSLEVLRSLSLLFNVSFEQ 60 Query: 172 IYFGDEVIVPKSIK 185 I FG++ + + + Sbjct: 61 IIFGEKPTMADNKE 74 >gi|84687520|ref|ZP_01015396.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84664429|gb|EAQ10917.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 209 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++D+RK+ T ++ A A S ++ ENG S + L EIS + Sbjct: 29 DLGERVRDLRKSRGWTLEQAANQAGLARSTLSKIENGQMSPTFEALKKLAVGLEISVPQL 88 Query: 91 YDGEVIDRRYEDVTNKK 107 + R +T K Sbjct: 89 FTPPQDARVSGRMTVTK 105 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 19/107 (17%) Query: 68 MCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 ++ + L E + + LD +G R++ +RK +G Sbjct: 3 ENDPTMPSLIRLARE----------------SGGSAPDPQPLD---LGERVRDLRKSRGW 43 Query: 128 SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 + + G+ STLS E G+ P + +K+ + + ++ Sbjct: 44 TLEQAANQAGLARSTLSKIENGQMSPTFEALKKLAVGLEISVPQLFT 90 >gi|320528113|ref|ZP_08029278.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131461|gb|EFW24026.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 176 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++ +RK TQ+++A V+ +E G + + L + Y + I Sbjct: 5 KIGKLLQTLRKEKGITQEQLAEQVGVTRRTVSRWETGSNMPDLDVLIELSDFYAVDLRKI 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 GE D + + L Sbjct: 65 LSGERNDEYMNEEVKETVL 83 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG L+++RK+KG++Q + + +G+ T+S +E G +P++ ++ Sbjct: 1 MNIAKIGKLLQTLRKEKGITQEQLAEQVGVTRRTVSRWETGSNMPDLDVLIELSDFYAVD 60 Query: 169 LDWIYFGD--EVIVPKSIKRA 187 L I G+ + + + +K Sbjct: 61 LRKILSGERNDEYMNEEVKET 81 >gi|303241397|ref|ZP_07327900.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302591006|gb|EFL60751.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 128 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++K +R N TQ +A N ++ V+ +E G + + + + +S DW+ Sbjct: 3 NFGDKLKMLRLEKNLTQNGLAKHLNVSKANVSRYELGTRQPNFDTLISISAFFNVSIDWL 62 Query: 91 YDGEVIDRRYEDVTNKKRL 109 I + Sbjct: 63 LGRSTIRNFSSVNDKPRNF 81 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +LK +R +K ++Q K L + + +S YE G P I +D Sbjct: 1 MVNFGDKLKMLRLEKNLTQNGLAKHLNVSKANVSRYELGTRQPNFDTLISISAFFNVSID 60 Query: 171 WIY 173 W+ Sbjct: 61 WLL 63 >gi|228960178|ref|ZP_04121835.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799446|gb|EEM46406.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] Length = 118 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 31/77 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI ++RK TQ+++ + ++ +E G S L + + + D+++ Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYLF 63 Query: 92 DGEVIDRRYEDVTNKKR 108 + + + Sbjct: 64 GKSDNSIKSSNNIKEIF 80 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 38/73 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+ +RK++ ++Q + G+ +G+ T+S YE+G IP + K+ +D Sbjct: 1 MNIIGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPID 60 Query: 171 WIYFGDEVIVPKS 183 +++ + + S Sbjct: 61 YLFGKSDNSIKSS 73 >gi|308233625|ref|ZP_07664362.1| DNA-binding protein [Atopobium vaginae DSM 15829] gi|328944523|ref|ZP_08241984.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829] gi|327490924|gb|EGF22702.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829] Length = 328 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 32/86 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK N +Q+E+A +V+ +E + + L + +S D + Sbjct: 3 LADKILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDLLV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 E+ ++ A Sbjct: 63 KDEIDVMGNNVDADENACQEEAGVRM 88 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + +RK G SQ E LG+ ++S +E ++IP+++ + ++ D + + Sbjct: 7 ILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDLLVKDE 65 >gi|319937527|ref|ZP_08011932.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] gi|319807367|gb|EFW03976.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] Length = 182 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 33/65 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+++R N +Q+ +A + +V+ +E G+ S L L + +S + + Sbjct: 3 IGEKIRELRIRNQLSQESIAQLLDVSRQSVSKWEKGLSKPSTDNLLRLSEIFSVSVEDLI 62 Query: 92 DGEVI 96 D ++ Sbjct: 63 DNDIQ 67 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R +SQ +LL + ++S +E+G + P ++ ++ ++ Sbjct: 1 MFIGEKIRELRIRNQLSQESIAQLLDVSRQSVSKWEKGLSKPSTDNLLRLSEIFSVSVED 60 Query: 172 IYFGD 176 + D Sbjct: 61 LIDND 65 >gi|312792346|ref|YP_004025269.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179486|gb|ADQ39656.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 274 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ N ++ ++A + +ENG + L + ++++ D++ Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIAEYFDVTVDYLVGRS 66 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 E ++ + + + LK K + Sbjct: 67 DYRTVEEQISKRSKFEKTVG-ESLKEAIMTKKLK 99 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK +R++K +S+ + ++LG+ T++NYE G P KI + +D Sbjct: 1 MNLFRFRLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIAEYFDVTVD 60 Query: 171 WIYFGDE--VIVPKSIKRAKGNQSSKKSKKD 199 ++ + + + KR+K ++ +S K+ Sbjct: 61 YLVGRSDYRTVEEQISKRSKFEKTVGESLKE 91 >gi|291544357|emb|CBL17466.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 112 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 31/88 (35%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI+ R+ + TQ++++ + + E G S S+ + +S D Sbjct: 7 YAAIGDRIRRYRELSRMTQEQLSELCSLSTGYIGHLERGTRSPSLETLAKIAQLLRVSLD 66 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + GE LD Sbjct: 67 DLVFGEAEIHNNMIKILALTLDDKNPEK 94 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 45/95 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ L+ AIG R++ R+ M+Q + +L + + + E+G P ++ KI Q+ Sbjct: 2 EQGLNYAAIGDRIRRYRELSRMTQEQLSELCSLSTGYIGHLERGTRSPSLETLAKIAQLL 61 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + LD + FG+ I IK K +K K Sbjct: 62 RVSLDDLVFGEAEIHNNMIKILALTLDDKNPEKVK 96 >gi|167038623|ref|YP_001666201.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117014|ref|YP_004187173.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857457|gb|ABY95865.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930105|gb|ADV80790.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 129 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 3/101 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N TQ+E+A N S + ++E G + + + +S D++ Sbjct: 4 DRLKTLRNEKNLTQRELARLLNLSPSTIAMYETGQRFPDPETLKKIADFFNVSIDYLLGR 63 Query: 94 EVIDRRYEDVTNKKRLDP--YAIGARLKSIRKDKGMSQIEF 132 I +++T DP + LK R+D + + Sbjct: 64 TDIRSPVDEITEAVSDDPELFEFWNTLKE-REDLKLLFKQT 103 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 38/69 (55%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK++R +K ++Q E +LL + ST++ YE G+ P+ + +KI +D++ Sbjct: 1 MLKDRLKTLRNEKNLTQRELARLLNLSPSTIAMYETGQRFPDPETLKKIADFFNVSIDYL 60 Query: 173 YFGDEVIVP 181 ++ P Sbjct: 61 LGRTDIRSP 69 >gi|300767756|ref|ZP_07077666.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494741|gb|EFK29899.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 183 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT+IK+ R+ + +Q+ +A + ++ +E G + + L + +S D + Sbjct: 5 IGTKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFAVSTDELL 64 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R+ SQ + L + T+S +E G++ P+++ + ++ D + Sbjct: 9 IKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFAVSTDELL 64 >gi|225018752|ref|ZP_03707944.1| hypothetical protein CLOSTMETH_02702 [Clostridium methylpentosum DSM 5476] gi|224948480|gb|EEG29689.1| hypothetical protein CLOSTMETH_02702 [Clostridium methylpentosum DSM 5476] Length = 97 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G R++++R TQ ++A N ++ ++ +EN + + S+ L Y +S D+I Sbjct: 4 DFGCRLRELRLNKKLTQTQVARRLNLSKTTISGYENNIKTPSLDVLTQLSILYGVSSDYI 63 Query: 91 YDGEVIDRRYEDVTNKKR 108 E D D K+ Sbjct: 64 LGLENRDMLLIDGLTDKQ 81 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G RL+ +R +K ++Q + + L + +T+S YE P + ++ + D+ Sbjct: 3 FDFGCRLRELRLNKKLTQTQVARRLNLSKTTISGYENNIKTPSLDVLTQLSILYGVSSDY 62 Query: 172 IY 173 I Sbjct: 63 IL 64 >gi|326803119|ref|YP_004320937.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650926|gb|AEA01109.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 115 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +R +Q+E+A + +S V +E+G L L N + +S D++ Sbjct: 5 GIRLAQLRNEKKMSQRELAEKMDVSQSYVGQWESGKRVIPTEKLLDLANFFNVSIDYLLG 64 Query: 93 GEVIDRRYEDVTNK 106 Sbjct: 65 YTNNKTPRSKDLKD 78 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L +R +K MSQ E + + + S + +E G+ + + + +D++ Sbjct: 8 LAQLRNEKKMSQRELAEKMDVSQSYVGQWESGKRVIPTEKLLDLANFFNVSIDYLLGYTN 67 Query: 178 VIVPKS 183 P+S Sbjct: 68 NKTPRS 73 >gi|257066681|ref|YP_003152937.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798561|gb|ACV29216.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 134 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K+ R N TQ+E+A +++ +EN I + L + YEIS D + Sbjct: 2 KIGDKLKEARLKKNMTQEEVAEKIFVSRQSISNWENNKTYPDIGNVIALSDLYEISLDEL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G ++ + + Sbjct: 62 LKGSDNFMKHLEESTD 77 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R K M+Q E + + + ++SN+E +T P+I + + + LD Sbjct: 1 MKIGDKLKEARLKKNMTQEEVAEKIFVSRQSISNWENNKTYPDIGNVIALSDLYEISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + G + + + +S+KK Sbjct: 61 LLKGSDNFMKHLEESTDLVKSNKK 84 >gi|56696154|ref|YP_166510.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677891|gb|AAV94557.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 130 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 + + T PE + G R+ R+A+ TQ ++A ++ +N +E+ + Sbjct: 1 MSDETDWYGPEAATF----GDRLAAAREASGMTQAQLARRLGVKKATINGWEDDLSEPRA 56 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 L +S W+ GE + T++ D A+ L+S+R D S Sbjct: 57 NRLSMLAGLLNVSIVWLITGEGQGGEALNETDETARDMAALLTELRSLRADLQASGQRAA 116 Query: 134 KL 135 +L Sbjct: 117 RL 118 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L + R+ GM+Q + + LG+ +T++ +E + P + + + W+ G+ Sbjct: 19 LAAAREASGMTQAQLARRLGVKKATINGWEDDLSEPRANRLSMLAGLLNVSIVWLITGE 77 >gi|332363707|gb|EGJ41487.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 168 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 38/85 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 + + V ++ D Y Sbjct: 62 LLEDSDKAELKPVLSEDEKDRYYKE 86 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E +K + K+ KS Sbjct: 61 LLL--EDSDKAELKPVLSEDEKDRYYKEVKS 89 >gi|167749402|ref|ZP_02421529.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702] gi|167657574|gb|EDS01704.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702] Length = 124 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 44/110 (40%), Gaps = 1/110 (0%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 G R+K +R + TQ+++A ++A++ +E + S + + + Sbjct: 15 TEARMVKFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFG 74 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 ++ D++ E R D++ D + + ++ K K + + Sbjct: 75 VTTDYLLGLEDKRSRTLDISGLCEEDIRFLQSA-AALLKKKNAVKKSAAE 123 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G R+K +R GM+Q + + + + + +SNYE P + KI V D Sbjct: 19 MVKFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTD 78 Query: 171 WIYFGDE 177 ++ ++ Sbjct: 79 YLLGLED 85 >gi|302531995|ref|ZP_07284337.1| hypothetical protein SSMG_08377 [Streptomyces sp. AA4] gi|302440890|gb|EFL12706.1| hypothetical protein SSMG_08377 [Streptomyces sp. AA4] Length = 148 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 39/137 (28%), Gaps = 18/137 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 + R+ ++ ++A A+ +AV E G + + I+ + Sbjct: 14 LAAARRQRGLSRGDLARLADISPAAVASLETGRRQPQVDSLARIAAALGIAVRDLVPIPD 73 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 L +R G++Q +G+ + L E+ Sbjct: 74 E------------------QRHLSDLRVHAGLTQAALAAAIGVSPTRLGALERAEQALAD 115 Query: 156 KPARKIKQVTKKHLDWI 172 AR++ I Sbjct: 116 DLARRLADALSVSPSTI 132 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L + R+ +G+S+ + +L + + +++ E GR P++ +I + + Sbjct: 9 FDPEALAAARRQRGLSRGDLARLADISPAAVASLETGRRQPQVDSLARIAAALGIAVRDL 68 Query: 173 Y 173 Sbjct: 69 V 69 >gi|225375203|ref|ZP_03752424.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM 16841] gi|225212954|gb|EEG95308.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM 16841] Length = 187 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 5/99 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G I ++RK TQ ++A N + AV+ +E G+ I+ L + +IS Sbjct: 3 NQKLGIFITELRKEKGLTQAQLAQKLNVTDKAVSKWERGVGFPDIKLLEPLADVLDISLL 62 Query: 89 WIYDGE-----VIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + E + + +D + +++ R Sbjct: 63 ELMKSERLPKTTVSAPDTTDAFQNVIDLASYERKIERQR 101 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G + +RK+KG++Q + + L + + +S +E+G P+IK + V Sbjct: 1 MDNQKLGIFITELRKEKGLTQAQLAQKLNVTDKAVSKWERGVGFPDIKLLEPLADVLDIS 60 Query: 169 LDWIYFGD 176 L + + Sbjct: 61 LLELMKSE 68 >gi|197117030|ref|YP_002137457.1| LexA-like helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197086390|gb|ACH37661.1| helix-turn-helix transcriptional regulator, LexA-related protein [Geobacter bemidjiensis Bem] Length = 209 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +Y + G RIK R A TQKE A ++ ++ E G S + L + + I+ Sbjct: 5 EYHAETGVRIKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGIN 64 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 W+ DG + + + + + + Sbjct: 65 AQWLSDGSGESFKNQPGAEQPNVSRAPLLEMI 96 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K R G++Q EF LG+ LS E GR P + + W+ Sbjct: 14 IKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGINAQWL 68 >gi|238855117|ref|ZP_04645443.1| transcriptional regulator [Lactobacillus jensenii 269-3] gi|260664949|ref|ZP_05865800.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|282934259|ref|ZP_06339534.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|313472503|ref|ZP_07812993.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|238832257|gb|EEQ24568.1| transcriptional regulator [Lactobacillus jensenii 269-3] gi|239529936|gb|EEQ68937.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|260561432|gb|EEX27405.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|281301668|gb|EFA93937.1| transcriptional regulator [Lactobacillus jensenii 208-1] Length = 136 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K +R+++N +Q+++A +++ +E G I + L Y +S D++ Sbjct: 3 NLNERLKTLRESSNLSQEDVANKLKISRQSISKWELGDAVPDIGKLMELSKIYNVSLDYL 62 Query: 91 YDGEVIDRRYEDVTNKKR 108 + ++ ++ Sbjct: 63 VGRDSSEKVKNTKEALRK 80 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK++R+ +SQ + L + ++S +E G +P+I ++ ++ LD Sbjct: 1 MNNLNERLKTLRESSNLSQEDVANKLKISRQSISKWELGDAVPDIGKLMELSKIYNVSLD 60 Query: 171 WIYFGDEVIVPKSIKRA 187 ++ D K+ K A Sbjct: 61 YLVGRDSSEKVKNTKEA 77 >gi|331702621|ref|YP_004399580.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129964|gb|AEB74517.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 201 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 11/98 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD--- 88 G R+K R TQK++A N ++ +E I + L + + IS D Sbjct: 3 FGARLKTERIELGLTQKQVADTMNVSRQTISSWETENSYPDIDSLIQLSDLFHISLDVLL 62 Query: 89 --------WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 ++ E ++ +D I + + Sbjct: 63 KEDVGMKEYLKKKEALEWIRPIKQVTITIDILFIISMI 100 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GARLK+ R + G++Q + + + T+S++E + P+I ++ + LD Sbjct: 1 MRFGARLKTERIELGLTQKQVADTMNVSRQTISSWETENSYPDIDSLIQLSDLFHISLDV 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + ++V + + +K+ + Sbjct: 61 LLK-EDVGMKEYLKKKE 76 >gi|327467942|gb|EGF13432.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 167 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 55/150 (36%), Gaps = 12/150 (8%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM--------PNST 142 + + V ++ + Y +KS + + + + T Sbjct: 62 LLEDSDKPEIKPVLSEDEKNRY--YKEVKSYGFWQVIYIFVSALAIFLFFAGSSFPAKFT 119 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + + + A I + K ++ Sbjct: 120 ALVWLSFFLL--VASAMAISKALKIKEKYL 147 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E IK + K+ KS Sbjct: 61 LLL--EDSDKPEIKPVLSEDEKNRYYKEVKS 89 >gi|323693691|ref|ZP_08107890.1| hypothetical protein HMPREF9475_02753 [Clostridium symbiosum WAL-14673] gi|323502305|gb|EGB18168.1| hypothetical protein HMPREF9475_02753 [Clostridium symbiosum WAL-14673] Length = 112 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 2/91 (2%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 L + LK + + E K +G +K R TQ+ +A AV Sbjct: 21 LLTLIVRALLKYIHSKD--VRQEKSVVRKSLGEALKVHRTQCKMTQEFVAETIGVSRQAV 78 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 + +ENG S L Y IS + + Sbjct: 79 SKWENGTSDPSTSNLFALAKLYGISVEELLK 109 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 +DV +K + ++G LK R M+Q + +G+ +S +E G + P Sbjct: 34 HSKDVRQEKSVVRKSLGEALKVHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNL 93 Query: 159 RKIKQVTKKHLDWIYFGDE 177 + ++ ++ + E Sbjct: 94 FALAKLYGISVEELLKEVE 112 >gi|293433714|ref|ZP_06662142.1| transcriptional repressor DicA [Escherichia coli B088] gi|291324533|gb|EFE63955.1| transcriptional repressor DicA [Escherichia coli B088] Length = 135 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI++ RK +Q +++ A S+++L+E+ + + L + S W Sbjct: 4 KTLGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTW 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAI-GARLKSIRK-DKGMSQIEFGKL 135 I G+ V LD L+ R K Q + +L Sbjct: 64 ILFGDEDKTPDPPVALNNALDLSEDEFEMLRLYRALPKSEQQAQISEL 111 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R++ RK G+SQ + K G+ S++S +E T P + ++ +V + Sbjct: 1 MNEKTLGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCS 60 Query: 169 LDWIYFGDEVIVP 181 WI FGDE P Sbjct: 61 PTWILFGDEDKTP 73 >gi|167634630|ref|ZP_02392950.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170687459|ref|ZP_02878676.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|254684118|ref|ZP_05147978.1| MerR family transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254741503|ref|ZP_05199190.1| MerR family transcriptional regulator [Bacillus anthracis str. Kruger B] gi|167530082|gb|EDR92817.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170668654|gb|EDT19400.1| DNA-binding protein [Bacillus anthracis str. A0465] Length = 181 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 39/99 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G ++ ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKAFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 100 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ + +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKAFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKVVKKVER 77 >gi|67078396|ref|YP_246013.1| DNA-binding protein [Bacillus cereus E33L] gi|66970702|gb|AAY60674.1| possible transcriptional regulator [Bacillus cereus E33L] Length = 143 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 38/96 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K R+ +Q+ +A + +V+ +E G SI + L + + I+ D + Sbjct: 3 FGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPSIGVIIDLSDLFGITIDELL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 + + +K D L S+ G+ Sbjct: 63 RSDGELKEKIIQDSKGSTDLNWKSYLLTSLGILMGI 98 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK R+ KG SQ + + ++S +E G+ P I + + +D Sbjct: 1 MFFGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPSIGVIIDLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + D + K I+ +KG+ Sbjct: 61 LLRSDGELKEKIIQDSKGSTD 81 >gi|83590551|ref|YP_430560.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573465|gb|ABC20017.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 152 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 32/81 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G R+ +RK +Q EMA N +S + ++E L + +++S D Sbjct: 1 MKSLGERLAFLRKERALSQAEMAKLLNMGQSTIAMYEKNKRRPDPETLERLADFFDVSID 60 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 ++ ++ + Sbjct: 61 YLLGRADSRQKETYPLQDETQ 81 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 38/73 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++G RL +RK++ +SQ E KLL M ST++ YE+ + P+ + ++ +D Sbjct: 1 MKSLGERLAFLRKERALSQAEMAKLLNMGQSTIAMYEKNKRRPDPETLERLADFFDVSID 60 Query: 171 WIYFGDEVIVPKS 183 ++ + ++ Sbjct: 61 YLLGRADSRQKET 73 >gi|295102882|emb|CBL00427.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 233 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK +RK TQK+ A ++ ++ +E G+ + + + + + Y +S D++ Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K +RK++G++Q + + LG+ + LS+YE+G + ++ D+ Sbjct: 1 MEFNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|212638621|ref|YP_002315141.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560101|gb|ACJ33156.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 115 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 31/75 (41%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + G R++++R Q+++A + ++E G L + N + +S Sbjct: 7 FMISFGDRLQELRNKMKLRQEDVAKKIGVGRTTYAMYEQGKREPDYETLLKIANFFGVSV 66 Query: 88 DWIYDGEVIDRRYED 102 D++ G+ ++ Sbjct: 67 DYLLTGQDKTDNEKN 81 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 ++ L + G RL+ +R + Q + K +G+ +T + YEQG+ P+ + KI Sbjct: 2 ERRNLFMISFGDRLQELRNKMKLRQEDVAKKIGVGRTTYAMYEQGKREPDYETLLKIANF 61 Query: 165 TKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 +D++ G D+ K++ S++ ++ K Sbjct: 62 FGVSVDYLLTGQDKTDNEKNLFFFDMEGLSEQEIEEIKK 100 >gi|157150768|ref|YP_001451299.1| Cro/CI family transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075562|gb|ABV10245.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii str. Challis substr. CH1] Length = 167 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 38/85 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q++++ N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLSEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 + + V ++ D Y Sbjct: 62 LLEDSDKPEIKPVLSEDEKDRYYKE 86 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLSEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E IK + K+ KS Sbjct: 61 LLL--EDSDKPEIKPVLSEDEKDRYYKEVKS 89 >gi|260662801|ref|ZP_05863695.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260552882|gb|EEX25881.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 322 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK +Q+E A +++ +E G + + L + + +S D + Sbjct: 3 LADKITNLRKKEGWSQEEFAERMGVSRQSISKWEGGRSTPDMNKILQMSELFGVSTDVLL 62 Query: 92 DGEVI-DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 ++ + + + D + ++ M Q Sbjct: 63 KDDLTLEDEVTTAASSVQNDNGEAIYPVSLELANEYMDQKASA 105 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 38/75 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + ++RK +G SQ EF + +G+ ++S +E GR+ P++ ++ ++ D + D Sbjct: 7 ITNLRKKEGWSQEEFAERMGVSRQSISKWEGGRSTPDMNKILQMSELFGVSTDVLLKDDL 66 Query: 178 VIVPKSIKRAKGNQS 192 + + A Q+ Sbjct: 67 TLEDEVTTAASSVQN 81 >gi|221195133|ref|ZP_03568189.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] gi|221185036|gb|EEE17427.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] Length = 244 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI +R A TQ+ +A + AV+ +EN + I L +S D Sbjct: 5 QETLGRRIARLRLAKAATQERLARELSVSPQAVSKWENDINYPDISLLPQLAQFLGVSID 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 + G R + + + K++ ++ F + Sbjct: 65 ELLRGASTQERKGLDVSMSITKEADESSDKREAGKEQNLAIGNFAE 110 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ +R K +Q + L + +S +E P+I ++ Q +D + G Sbjct: 10 RRIARLRLAKAATQERLARELSVSPQAVSKWENDINYPDISLLPQLAQFLGVSIDELLRG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 K + + DK+ + Sbjct: 70 ASTQERKGLDVSMSITKEADESSDKREA 97 >gi|167758542|ref|ZP_02430669.1| hypothetical protein CLOSCI_00882 [Clostridium scindens ATCC 35704] gi|167663738|gb|EDS07868.1| hypothetical protein CLOSCI_00882 [Clostridium scindens ATCC 35704] Length = 94 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 37/78 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK +R + + TQ ++A N S+VN +E G+ + S Y + L + +S D++ Sbjct: 3 IADKIKQLRTSRDMTQSDLAKKLNITRSSVNAWEMGLSTPSTAYLVELSQLFHVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 ++K + Sbjct: 63 GLSGNATLDISNLSEKEV 80 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K +R + M+Q + K L + S+++ +E G + P ++ Q+ D+ Sbjct: 1 MMIADKIKQLRTSRDMTQSDLAKKLNITRSSVNAWEMGLSTPSTAYLVELSQLFHVSTDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|313673082|ref|YP_004051193.1| transcriptional regulator, merr family [Calditerrivibrio nitroreducens DSM 19672] gi|312939838|gb|ADR19030.1| transcriptional regulator, MerR family [Calditerrivibrio nitroreducens DSM 19672] Length = 178 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +I+DIRK T +++++ +S ++ ENG S SI + IS +++ Sbjct: 4 GEKIRDIRKRLGMTLEDVSLKTGFTKSFISQIENGKNSPSIASLKKICYAIGISISELFE 63 Query: 93 GEVIDRRYEDVTNKKRL 109 E + + K L Sbjct: 64 DERNIVFKFEKDDYKVL 80 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +++ IRK GM+ + G S +S E G+ P I +KI + Sbjct: 1 MGYGEKIRDIRKRLGMTLEDVSLKTGFTKSFISQIENGKNSPSIASLKKICYAIGISISE 60 Query: 172 IYFGDEVIVPKSIKR 186 ++ + IV K K Sbjct: 61 LFEDERNIVFKFEKD 75 >gi|118586301|ref|ZP_01543755.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118433264|gb|EAV39976.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 122 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N +QK++A A++ +E+G + + + L ++S D + G Sbjct: 6 EQLKKYRNKKNLSQKDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLDTLVLG 65 Query: 94 EVIDRRYEDVTNKKR 108 D Sbjct: 66 SEEQNSRIDNKQFSF 80 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK R K +SQ + L + +S +E G T P++ K+ ++ LD Sbjct: 1 MAKFPEQLKKYRNKKNLSQKDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLD 60 Query: 171 WIYFGDEVI 179 + G E Sbjct: 61 TLVLGSEEQ 69 >gi|300172366|ref|YP_003771531.1| Cro/CI family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886744|emb|CBL90712.1| transcriptional regulator, Cro/CI family [Leuconostoc gasicomitatum LMG 18811] Length = 196 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK+ R N +Q+++A ++ +E I+ L L + + S D + Sbjct: 2 ELGKQIKNYRTTFNYSQEQLAEKTFVSRQTISNWETNKSYPDIQSLLLLSSVFGTSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G++ + E NK + Sbjct: 62 VKGDLQVMKNELQNNKSNRRMTVYSWIM 89 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 38/80 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K+ R SQ + + + T+SN+E ++ P+I+ + V LD Sbjct: 1 MELGKQIKNYRTTFNYSQEQLAEKTFVSRQTISNWETNKSYPDIQSLLLLSSVFGTSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + GD ++ ++ K N+ Sbjct: 61 LVKGDLQVMKNELQNNKSNR 80 >gi|261493124|ref|ZP_05989660.1| putative repressor protein CI [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496453|ref|ZP_05992836.1| putative repressor protein CI [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307886|gb|EEY09206.1| putative repressor protein CI [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311212|gb|EEY12379.1| putative repressor protein CI [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 279 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 7/130 (5%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 RK TQ E+ N + V + NG + L + + I+ D Sbjct: 9 QQRKICGLTQVELGDKLNVEQGTVGNWLNGRREPELATILKIFHALGIT----QVTFNSD 64 Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + D+ +K+R+ Y + RK+ G+SQ E + +T+ N+ R +I Sbjct: 65 SQIVDIQSKQRIHWYELAE---QRRKNLGLSQAELADEFEVSQATVGNWLSNRREADIYT 121 Query: 158 ARKIKQVTKK 167 K+ + Sbjct: 122 IAKLLERLGI 131 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 RK G++Q+E G L + T+ N+ GR PE+ KI Sbjct: 9 QQRKICGLTQVELGDKLNVEQGTVGNWLNGRREPELATILKIFHALGIT 57 >gi|302562687|ref|ZP_07315029.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302480305|gb|EFL43398.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 199 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R++ +R+ T ++ S ++ E G ++ L L EY + D + Sbjct: 13 MGPRLRAVRERRGVTLTDVCCATGISPSTLSRIETGRRKPTLEVVLQLAKEYGVGLDEL 71 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+ +G++ + G+ STLS E GR P ++ ++ + LD + Sbjct: 12 AMGPRLRAVRERRGVTLTDVCCATGISPSTLSRIETGRRKPTLEVVLQLAKEYGVGLDEL 71 >gi|302386036|ref|YP_003821858.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196664|gb|ADL04235.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 204 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 44/107 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +RK NN TQ+++A +AV+ +E+G +I + + +S D + Sbjct: 2 EFNEKLQQLRKQNNLTQEQLAEQLYVSRTAVSKWESGKGYPNIESLKCISKVFAVSIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 G + + Y++ + + + +G+ G Sbjct: 62 LSGNELITLAQSENRSNISKLYSLMYGILDVMAFAFIFLPFYGQQEG 108 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +RK ++Q + + L + + +S +E G+ P I+ + I +V +D Sbjct: 1 MEFNEKLQQLRKQNNLTQEQLAEQLYVSRTAVSKWESGKGYPNIESLKCISKVFAVSIDE 60 Query: 172 IYFGDEVIV 180 + G+E+I Sbjct: 61 LLSGNELIT 69 >gi|296110469|ref|YP_003620850.1| transcription regulator [Leuconostoc kimchii IMSNU 11154] gi|295832000|gb|ADG39881.1| transcription regulator [Leuconostoc kimchii IMSNU 11154] Length = 103 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +RK+ N TQ E++ + ++ +E G+ S+ + + S D++ Sbjct: 6 FGEKLKAVRKSKNLTQLELSKRLEVSKGTISAYEQGLSYPSLETLVKICEILNTSSDYLL 65 Query: 92 DGEVIDRRYEDVTNKKRLD 110 ++++ Sbjct: 66 SLSDNLTFKMGGLTSEQMN 84 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 36/65 (55%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G +LK++RK K ++Q+E K L + T+S YEQG + P ++ KI ++ Sbjct: 1 MQTDFFGEKLKAVRKSKNLTQLELSKRLEVSKGTISAYEQGLSYPSLETLVKICEILNTS 60 Query: 169 LDWIY 173 D++ Sbjct: 61 SDYLL 65 >gi|187778278|ref|ZP_02994751.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC 15579] gi|187771903|gb|EDU35705.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC 15579] Length = 180 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK+ N TQ+E+ S V ++E S + + + + +S D++ Sbjct: 36 LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIADFFCVSTDFLL 95 Query: 92 DGEVI 96 + E Sbjct: 96 NTEEK 100 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 38/97 (39%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 D N +G ++K +RK K ++Q E GK +G+ S + YE P + Sbjct: 21 YNTDSDNNIFEVIILLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVL 80 Query: 159 RKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 KI D++ +E + K + KK Sbjct: 81 IKIADFFCVSTDFLLNTEEKLDMALDSAKKIHDMVKK 117 >gi|551457|gb|AAB46931.1| orf1 [Methylobacterium extorquens AM1] Length = 139 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 31/69 (44%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E R K +G +I+ +R+ + + ++A A + ++ ENG S S+ + + Sbjct: 12 EERPLEKALGYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSLASINAIASAL 71 Query: 84 EISFDWIYD 92 + ++ Sbjct: 72 NVPITGLFT 80 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G +++ +R+++ +S + G+ +S E G P + I + + Sbjct: 19 ALGYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSLASINAIASALNVPITGL 78 Query: 173 YF-GDEVIVPKSIKRAKGNQSSKKSKK 198 + +E +KR +G ++ K Sbjct: 79 FTAFEETRDCSHVKRGQGVPIERRGIK 105 >gi|42783489|ref|NP_980736.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47566547|ref|ZP_00237369.1| transcriptional regulator, merR family [Bacillus cereus G9241] gi|206976014|ref|ZP_03236924.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217961850|ref|YP_002340420.1| DNA-binding protein [Bacillus cereus AH187] gi|222097805|ref|YP_002531862.1| DNA-binding protein [Bacillus cereus Q1] gi|42739418|gb|AAS43344.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47556577|gb|EAL14909.1| transcriptional regulator, merR family [Bacillus cereus G9241] gi|206745766|gb|EDZ57163.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066022|gb|ACJ80272.1| DNA-binding protein [Bacillus cereus AH187] gi|221241863|gb|ACM14573.1| DNA-binding protein [Bacillus cereus Q1] Length = 181 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 38/99 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 100 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKVVKKVER 77 >gi|229082772|ref|ZP_04215209.1| hypothetical protein bcere0023_53730 [Bacillus cereus Rock4-2] gi|228700527|gb|EEL53076.1| hypothetical protein bcere0023_53730 [Bacillus cereus Rock4-2] Length = 144 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 4/132 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQ+ +A N + ++ +ENG + S L N ++ D++ Sbjct: 4 QRLKEMRKTRKLTQQGLADKVNTTKGTISNYENGHSTPSNEMLKDLANVLGVTTDYLLGR 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E R + + + D I L+ K L + + + Sbjct: 64 EDESRMSNALPDLNKKDTRDIARDLEKTLK----DLENSEDALMFDGEPIDEHTKEMIRI 119 Query: 154 EIKPARKIKQVT 165 ++ + ++ + Sbjct: 120 SLENSMRMAKQL 131 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK +RK + ++Q + T+SNYE G + P + + + V D++ Sbjct: 1 MLRQRLKEMRKTRKLTQQGLADKVNTTKGTISNYENGHSTPSNEMLKDLANVLGVTTDYL 60 Query: 173 YFGDEV 178 ++ Sbjct: 61 LGREDE 66 >gi|160914483|ref|ZP_02076698.1| hypothetical protein EUBDOL_00488 [Eubacterium dolichum DSM 3991] gi|158433641|gb|EDP11930.1| hypothetical protein EUBDOL_00488 [Eubacterium dolichum DSM 3991] Length = 251 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 38/81 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G I ++RKA N QKE+ + ++ +ENG+ +I L +IS + Sbjct: 6 HEKIGHFISEMRKAKNMKQKELGDQLFVSDKTISKWENGISMPNIVLLAPLAELLDISVN 65 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + GE + + T ++ L Sbjct: 66 ELLKGEKLTQESVAKTREEAL 86 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 39/84 (46%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + LD IG + +RK K M Q E G L + + T+S +E G ++P I + ++ Sbjct: 1 MESLDHEKIGHFISEMRKAKNMKQKELGDQLFVSDKTISKWENGISMPNIVLLAPLAELL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKG 189 ++ + G+++ K + Sbjct: 61 DISVNELLKGEKLTQESVAKTREE 84 >gi|326390754|ref|ZP_08212307.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993148|gb|EGD51587.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 130 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK N TQ ++A S + +E + + + +S D++ Sbjct: 5 DRLKELRKEKNLTQGDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDYLLGR 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR 117 I +++T DP Sbjct: 65 TDIRSPVDEITEAVSDDPELFEFW 88 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 37/70 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +RK+K ++Q + K+LG+ ST++ YE R P+ + +KI +D+ Sbjct: 1 MTFSDRLKELRKEKNLTQGDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDY 60 Query: 172 IYFGDEVIVP 181 + ++ P Sbjct: 61 LLGRTDIRSP 70 >gi|229027735|ref|ZP_04183918.1| transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228733571|gb|EEL84372.1| transcriptional regulator, XRE [Bacillus cereus AH1272] Length = 102 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G I+D+RK TQKE+A ES + ++E + + + + +S D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPY 112 ++ D ++ N K LD + Sbjct: 61 FLL---GRDFNVKEDRNNKELDQW 81 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +RK KG++Q E + L + ST+ YE+ P+ +I D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTD 60 Query: 171 WIYFGD 176 ++ D Sbjct: 61 FLLGRD 66 >gi|159038191|ref|YP_001537444.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917026|gb|ABV98453.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 219 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + VG R++ +R+ T +++ ES ++ E G ++ L L Sbjct: 1 MDSDTNDVLDAVGPRLRALRRHRGLTLADVSTTTGVSESTLSRLEGGQRRATLELLLPLA 60 Query: 81 NEYEISFDWIY 91 Y + D + Sbjct: 61 RIYNVPLDDLV 71 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+ +G++ + G+ STLS E G+ ++ + ++ LD + Sbjct: 11 AVGPRLRALRRHRGLTLADVSTTTGVSESTLSRLEGGQRRATLELLLPLARIYNVPLDDL 70 Query: 173 Y----FGDEVIVPKSIKR 186 GD I I+R Sbjct: 71 VGAPRTGDPRIHLTPIRR 88 >gi|116334877|ref|YP_796403.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100224|gb|ABJ65372.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 254 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK +R+ +N TQ+ +A + V+ +E G ++ L + IS + + E Sbjct: 7 IKTLRRQSNLTQEALAQQLHVTRQTVSTWETGKNMPNLETLHALSQLFNISLEKLLFNEE 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIR 122 I + + + + + + + R Sbjct: 67 ITMKKDKDPSLATQIDHDVKLKSRYRR 93 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 36/72 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K++R+ ++Q + L + T+S +E G+ +P ++ + Q+ L+ Sbjct: 1 MSFKEDIKTLRRQSNLTQEALAQQLHVTRQTVSTWETGKNMPNLETLHALSQLFNISLEK 60 Query: 172 IYFGDEVIVPKS 183 + F +E+ + K Sbjct: 61 LLFNEEITMKKD 72 >gi|13487804|ref|NP_108682.1| cI2009 [Lactococcus phage Tuc2009] gi|509672|gb|AAA21825.1| cI2009 [Bacteriophage Tuc2009] Length = 286 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I Q K VG++IKD RK+ +Q+E+A ++ ++ +E G+ S + L ++ Sbjct: 3 IEQINKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFD 62 Query: 85 ISFDWIYD 92 ++ D + Sbjct: 63 VAIDDFFP 70 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G+++K RK G+SQ E K +G+ +T+SNYE G P+ K+ +V +D Sbjct: 7 NKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAID 66 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + N SS S+ +K SS Sbjct: 67 DFF--------PQTDSTRMNVSSILSEINKISS 91 >gi|16078316|ref|NP_389133.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221309100|ref|ZP_03590947.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221313427|ref|ZP_03595232.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318350|ref|ZP_03599644.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221322623|ref|ZP_03603917.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|321314993|ref|YP_004207280.1| Phage PBSX transcriptional regulator [Bacillus subtilis BSn5] gi|139821|sp|P23789|XRE_BACSU RecName: Full=HTH-type transcriptional regulator xre; AltName: Full=Putative pbsX repressor gi|143835|gb|AAA22894.1| PBSX repressor [Bacillus subtilis] gi|498812|emb|CAA84042.1| xre [Bacillus subtilis subsp. subtilis str. 168] gi|1225936|emb|CAA94052.1| PBSX repressor [Bacillus subtilis subsp. subtilis str. 168] gi|2633605|emb|CAB13108.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291483768|dbj|BAI84843.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|320021267|gb|ADV96253.1| Phage PBSX transcriptional regulator [Bacillus subtilis BSn5] Length = 113 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R TQ+E+A + + +ENG L + ++++ D++ Sbjct: 2 IGGRLKSLRGKR--TQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLL 59 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 G+ + ++ Y Sbjct: 60 TGKDKKSDDDMFSDPDLQLAYRDMQ 84 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LKS+R + +Q E +G+ + S+YE GR+ P+ +K+ + D++ G + Sbjct: 6 LKSLRGKR--TQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLLTGKD 63 >gi|313889505|ref|ZP_07823151.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122117|gb|EFR45210.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 135 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++K R N +Q +A A++ +ENG + + + L ++++ D + Sbjct: 3 NFAKQLKKYRLEKNYSQDTLADQLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLDQL 62 Query: 91 YDGEVIDRRYEDVTNKKR 108 G+ ++ + + Sbjct: 63 VRGKESTSSLDNENSLEN 80 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 33/82 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK R +K SQ L + +S +E G + P+++ K+ ++ LD Sbjct: 1 MNNFAKQLKKYRLEKNYSQDTLADQLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQS 192 + G E + + N + Sbjct: 61 QLVRGKESTSSLDNENSLENDN 82 >gi|258654776|ref|YP_003203932.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558001|gb|ACV80943.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 197 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 28/78 (35%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG R+K +R T ++ +S ++ E G ++ L L + Y + D Sbjct: 17 RQVGPRLKGLRTQRGLTLTVVSASTGISKSTLSRLETGQRRPTLELLLALSHAYRVPLDD 76 Query: 90 IYDGEVIDRRYEDVTNKK 107 + + + Sbjct: 77 LVAAPEEGDPRLRLKPGR 94 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R +G++ G+ STLS E G+ P ++ + + LD + E Sbjct: 23 LKGLRTQRGLTLTVVSASTGISKSTLSRLETGQRRPTLELLLALSHAYRVPLDDLVAAPE 82 Query: 178 VIVPK 182 P+ Sbjct: 83 EGDPR 87 >gi|52079830|ref|YP_078621.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52785200|ref|YP_091029.1| YqaE [Bacillus licheniformis ATCC 14580] gi|52003041|gb|AAU22983.1| probable transcriptional regulator (phage-related) [Bacillus licheniformis ATCC 14580] gi|52347702|gb|AAU40336.1| YqaE [Bacillus licheniformis ATCC 14580] Length = 122 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 G R++++RK N +QK++ ES ++++E + + + +++S D+ Sbjct: 2 KFGDRLRELRKMRPNLSQKKLGEHLGLAESTISMYEQNRREPEYEILIKIADYFDVSIDY 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + G + + ++ + + Sbjct: 62 LLRGTDPKVQDKIFEDEAKRILNDPKTFI 90 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 112 YAIGARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RL+ +RK + +SQ + G+ LG+ ST+S YEQ R PE + KI +D Sbjct: 1 MKFGDRLRELRKMRPNLSQKKLGEHLGLAESTISMYEQNRREPEYEILIKIADYFDVSID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 ++ G + V I + + Sbjct: 61 YLLRGTDPKVQDKIFEDEAKR 81 >gi|254465630|ref|ZP_05079041.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206686538|gb|EDZ47020.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 207 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 37/83 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA + T + A A S ++ ENG S + L +IS + Sbjct: 26 DLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLQISVPQL 85 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 + D+ +T K D A Sbjct: 86 FTPPQRDQVNGRMTVTKSGDGSA 108 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 N + LD +GAR++ +RK + + G+ STLS E G+ P + +K+ Sbjct: 19 EDNAEPLD---LGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKLA 75 Query: 163 QVTKKHLDWIYF 174 + + ++ Sbjct: 76 VGLQISVPQLFT 87 >gi|329117658|ref|ZP_08246375.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326908063|gb|EGE54977.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 331 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I + RK N +Q+++A + +V+ +E + + + + +S D++ Sbjct: 3 LADKIIEERKRNGWSQEQLAEKLDVSRQSVSKWEGAQSVPDLNRIIQMAEIFGVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLD 110 + I + K D Sbjct: 63 KEDQIKSTLVADDSNKAFD 81 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 31/61 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + RK G SQ + + L + ++S +E +++P++ ++ ++ D++ D+ Sbjct: 7 IIEERKRNGWSQEQLAEKLDVSRQSVSKWEGAQSVPDLNRIIQMAEIFGVSTDYLLKEDQ 66 Query: 178 V 178 + Sbjct: 67 I 67 >gi|237737130|ref|ZP_04567611.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229420992|gb|EEO36039.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 181 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +I+ RK TQ+E+ N + +E+ I+ + L ++++ D++ Sbjct: 20 NFGDKIQLQRKKKGMTQEELGEELNVSRQTITKWESNQSFPEIKKIIKLSYFFDVTIDYL 79 Query: 91 YDGEVIDRRYE 101 E+ D Sbjct: 80 LKDEIEDEERN 90 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 44/90 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +++ RK KGM+Q E G+ L + T++ +E ++ PEIK K+ +D Sbjct: 18 NMNFGDKIQLQRKKKGMTQEELGEELNVSRQTITKWESNQSFPEIKKIIKLSYFFDVTID 77 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ + +++ + + + + S K K Sbjct: 78 YLLKDEIEDEERNVIKIEKEEKNIFSTKIK 107 >gi|291532130|emb|CBK97715.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 106 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 45/104 (43%), Gaps = 1/104 (0%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R+K +R + TQ+++A ++A++ +E + S + + + ++ D++ Sbjct: 3 KFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDYL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 + E R D++ D + + ++ K K + + Sbjct: 63 FGLEDKRSRTLDISGLCEEDIRFLQSA-AALLKKKNAVKKSVAE 105 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G R+K +R GM+Q + + + + + +SNYE P + KI V D Sbjct: 1 MVKFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTD 60 Query: 171 WIYFGDE 177 +++ ++ Sbjct: 61 YLFGLED 67 >gi|160945036|ref|ZP_02092262.1| hypothetical protein FAEPRAM212_02551 [Faecalibacterium prausnitzii M21/2] gi|158442767|gb|EDP19772.1| hypothetical protein FAEPRAM212_02551 [Faecalibacterium prausnitzii M21/2] gi|295104555|emb|CBL02099.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 231 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK +RK TQK+ A ++ ++ +E G+ + + + + + Y +S D++ Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K +RK++G++Q + + LG+ + LS+YE+G + ++ D+ Sbjct: 1 MEFNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|228957400|ref|ZP_04119156.1| hypothetical protein bthur0005_9210 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802278|gb|EEM49139.1| hypothetical protein bthur0005_9210 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 149 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGQNYPSIEIIIHLSDLFSITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGQNYPSIEIIIHLSDLFSITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKIIEDSK 77 >gi|229032011|ref|ZP_04187995.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] gi|228729317|gb|EEL80310.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] Length = 181 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 38/99 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 100 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKVVKKVER 77 >gi|225377603|ref|ZP_03754824.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans DSM 16841] gi|225210579|gb|EEG92933.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans DSM 16841] Length = 156 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + + ++G +IK+ RK +Q+++A N A+ +E I + Sbjct: 1 MSLPNNKEDSKMNLGEKIKECRKQAGFSQEQLAERLNVSRQAITKWETNKGIPDIVNLIA 60 Query: 79 LRNEYEISFDWIYDGE 94 + +E+ +S D + + Sbjct: 61 ISDEFGLSLDELIKDD 76 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + N K +G ++K RK G SQ + + L + ++ +E + IP+I Sbjct: 1 MSLPNNKEDSKMNLGEKIKECRKQAGFSQEQLAERLNVSRQAITKWETNKGIPDIVNLIA 60 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 I LD + D + K I + + Sbjct: 61 ISDEFGLSLDELIKDDVAVKKKIITDSSAKK 91 >gi|89896129|ref|YP_519616.1| hypothetical protein DSY3383 [Desulfitobacterium hafniense Y51] gi|89335577|dbj|BAE85172.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 169 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 1/95 (1%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNE 82 + K +GTRIK +RK + +++ + + + ENG S + + + Sbjct: 31 NAESFKKALGTRIKQLRKNGKLSLADLSRHLPSISRANLGRIENGEVMPSAIFIYEISSF 90 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + +S DW+ G +RL Sbjct: 91 FNVSADWLLTGNTPALPIYLNAEHERLIEMFNLMN 125 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K +RK+ +S + + L + + L E G +P +I DW Sbjct: 38 ALGTRIKQLRKNGKLSLADLSRHLPSISRANLGRIENGEVMPSAIFIYEISSFFNVSADW 97 Query: 172 IYFGDEVIVP 181 + G+ +P Sbjct: 98 LLTGNTPALP 107 >gi|330468037|ref|YP_004405780.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811008|gb|AEB45180.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 192 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +RK T E+A S ++ E+G ++ L L +++ D + Sbjct: 11 VGPRLRALRKNRGTTLSELADTTGISVSTLSRLESGQRRPTLELLLPLARAHQVPLDELV 70 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++RK++G + E G+ STLS E G+ P ++ + + + LD + Sbjct: 10 AVGPRLRALRKNRGTTLSELADTTGISVSTLSRLESGQRRPTLELLLPLARAHQVPLDEL 69 Query: 173 YF----GDEVIVPKSIKR 186 GD + P+ I R Sbjct: 70 VGAPAVGDPRVHPRPIVR 87 >gi|315222450|ref|ZP_07864351.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188474|gb|EFU22188.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 133 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G I +RKA TQ E+A + AV+ +E + I L + ++ S D Sbjct: 4 QTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTSVDE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLD 110 + G+ + + + +D Sbjct: 64 LMQGQTVMKENKKNRKSDIVD 84 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G + S+RK KGM+Q+E + +G+ + +S +E+ + P+I K+ + Sbjct: 1 MKKQTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 +D + G V+ K N+ ++KS Sbjct: 61 VDELMQGQTVM--------KENKKNRKSD 81 >gi|283780906|ref|YP_003371661.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283439359|gb|ADB17801.1| transcriptional regulator, XRE family [Pirellula staleyi DSM 6068] Length = 183 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 36/91 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+++R + T +E+A ++ EN + S+ + + +S + Sbjct: 5 QLSQRIREMRTSAGLTLEELAEKTGMTRGVISKIENFRVTPSLPTLAKIAEAFGVSTADL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 G + V ++R + G+ ++ Sbjct: 65 LAGLDQRPQIVVVRKEERQEITRDGSAIRYF 95 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + R++ +R G++ E + GM +S E R P + KI + Sbjct: 1 MNLLQLSQRIREMRTSAGLTLEELAEKTGMTRGVISKIENFRVTPSLPTLAKIAEAFGVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKK 195 + G + + R + Q + Sbjct: 61 TADLLAGLDQRPQIVVVRKEERQEITR 87 >gi|126650379|ref|ZP_01722607.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905] gi|126593029|gb|EAZ87011.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905] Length = 182 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG +IK +RK N +Q ++A N +S ++ ENG + S+ + +++ W Sbjct: 5 EVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVPMAWF 64 Query: 91 YDGEVID 97 + D Sbjct: 65 VIQDQFD 71 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 41/89 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++K +RK MSQ + + + S +S E G+ P + KI ++ Sbjct: 1 MNLLEVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + W D+ + + + N++ + ++ Sbjct: 61 MAWFVIQDQFDGISIVSKKERNETVETNQ 89 >gi|224540895|ref|ZP_03681434.1| hypothetical protein CATMIT_00038 [Catenibacterium mitsuokai DSM 15897] gi|224526193|gb|EEF95298.1| hypothetical protein CATMIT_00038 [Catenibacterium mitsuokai DSM 15897] Length = 117 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + E +Y K +G IK R TQ+ +A AV+ +ENG S + L Sbjct: 42 PVRKEKEEYAKTLGGVIKKHRMECQMTQEFVAETLGVSRQAVSKWENGSSDPSTTNLIAL 101 Query: 80 RNEYEISFDWIYD 92 + ++I+ + + Sbjct: 102 ASLFDITPEEMLK 114 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 1/88 (1%) Query: 89 WIYDGEVIDRRYEDV-TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 ++ + + +K +G +K R + M+Q + LG+ +S +E Sbjct: 28 YLLIVALRKYIKSEPVRKEKEEYAKTLGGVIKKHRMECQMTQEFVAETLGVSRQAVSKWE 87 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFG 175 G + P + + + + Sbjct: 88 NGSSDPSTTNLIALASLFDITPEEMLKE 115 >gi|229169105|ref|ZP_04296820.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|228614333|gb|EEK71443.1| Transcriptional regulator, MerR [Bacillus cereus AH621] Length = 181 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 38/100 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKIVKKEERKYSVYGKDEQRIEHVAEQGGLRLS 101 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKIVKKEER 77 >gi|312870378|ref|ZP_07730503.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311094079|gb|EFQ52398.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 126 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 30/71 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R+A +Q+++A + A++ +ENG I + + + +S D + Sbjct: 6 QQLTKLRQAAGLSQEQLADQLHVSRQAISKWENGSALPDIEKIIQIASILHVSLDELVLA 65 Query: 94 EVIDRRYEDVT 104 + + Sbjct: 66 KEPAVSQSKLD 76 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +L +R+ G+SQ + L + +S +E G +P+I+ +I + LD Sbjct: 1 MNQFQQQLTKLRQAAGLSQEQLADQLHVSRQAISKWENGSALPDIEKIIQIASILHVSLD 60 Query: 171 WIYFGDEVIVPKS 183 + E V +S Sbjct: 61 ELVLAKEPAVSQS 73 >gi|257888764|ref|ZP_05668417.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257824818|gb|EEV51750.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 72 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ N+ TQ+++A N +S + +ENG ++ + L + Y S D++ + Sbjct: 3 QRIRDLREDNDLTQQQIAKLLNVSQSTYSRYENGELDIPMKTVIKLAHYYNTSVDYLVNM 62 Query: 94 EVIDRRYEDV 103 I Y+ Sbjct: 63 TNIKTPYKRN 72 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D ++Q + KLL + ST S YE G +K K+ +D++ Sbjct: 1 MFQRIRDLREDNDLTQQQIAKLLNVSQSTYSRYENGELDIPMKTVIKLAHYYNTSVDYLV 60 Query: 174 FGDEVIVP 181 + P Sbjct: 61 NMTNIKTP 68 >gi|254428930|ref|ZP_05042637.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] gi|196195099|gb|EDX90058.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] Length = 119 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R A TQ+++ + +S ++ +ENG S R L+ +S D + G Sbjct: 15 ERLKAARLALGLTQEQLGDELHVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDHLICG 74 Query: 94 EVIDRRYEDVTNKK-RLDPYAIGARLKSIRK 123 + ++ E + ++ A LK R+ Sbjct: 75 DPVEGASELNSKYDAQVRNDAEAQLLKGYRR 105 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK+ R G++Q + G L + ST+S +E GR P + K+K V LD Sbjct: 11 MSFPERLKAARLALGLTQEQLGDELHVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDH 70 Query: 172 IYFGDEVIVPKSI 184 + GD V + Sbjct: 71 LICGDPVEGASEL 83 >gi|197105901|ref|YP_002131278.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479321|gb|ACG78849.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 206 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 38/95 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+ ++G ++ RK T KE+A + + ++ E G + SI L + + Sbjct: 17 RRKDRINIGPAVRVRRKELGLTLKELAERSGLSVAFISQIERGKTAPSIISLLQISDALG 76 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + + + ++ + + +D + ++ Sbjct: 77 VGVNHFVEATQEEKLIRRGRDPEFIDVDSPTTYIR 111 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 2/101 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + +R D IG ++ RK+ G++ E + G+ + +S E+G+ Sbjct: 1 MRDSSKPAPRRESGRGRRKDRINIGPAVRVRRKELGLTLKELAERSGLSVAFISQIERGK 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 T P I +I ++ + K I+R + + Sbjct: 61 TAPSIISLLQISDALGVGVNHFV--EATQEEKLIRRGRDPE 99 >gi|266624214|ref|ZP_06117149.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288863957|gb|EFC96255.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 94 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G +K +R N TQ +++ +S ++ +E G+ S +++ +++S D++ Sbjct: 3 DFGNTLKTLRLQENMTQAQLSQKLGLTKSVISAYETGLRLPSYDVLIHIAQIFKVSTDYL 62 Query: 91 YDGEVID 97 E D Sbjct: 63 LGVEHKD 69 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK++R + M+Q + + LG+ S +S YE G +P I Q+ K D Sbjct: 1 MVDFGNTLKTLRLQENMTQAQLSQKLGLTKSVISAYETGLRLPSYDVLIHIAQIFKVSTD 60 Query: 171 WIYFGD 176 ++ + Sbjct: 61 YLLGVE 66 >gi|229157978|ref|ZP_04286049.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] gi|228625431|gb|EEK82187.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] Length = 181 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 38/99 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 100 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKVVKKVER 77 >gi|255103016|ref|ZP_05331993.1| putative regulatory protein [Clostridium difficile QCD-63q42] Length = 122 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +K +G RIK R TQ+ ++ N V+ E G S S+ + + N Sbjct: 1 MELDFKFIGQRIKIARIKKKLTQEVLSEKINVSPQHVSNIETGNSSVSLPTLVAIANTLG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S D + ++ + + + ++ I Sbjct: 61 VSVDELLCDTILSSKAVFENELEEVLRDCNEYEIRFI 97 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD IG R+K R K ++Q + + + +SN E G + + I Sbjct: 1 MELDFKFIGQRIKIARIKKKLTQEVLSEKINVSPQHVSNIETGNSSVSLPTLVAIANTLG 60 Query: 167 KHLDWIY 173 +D + Sbjct: 61 VSVDELL 67 >gi|325847281|ref|ZP_08169999.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480912|gb|EGC83961.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 167 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK+ RK N TQ+ +A N AV+ +E G+ S+ + L + + + Sbjct: 2 IGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGVDIKYFK 61 Query: 92 DGEVIDRRYE 101 + + + Sbjct: 62 NNDEKENDSF 71 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++K+ RK+ ++Q K L + +S +E+G + P + K+ ++ + + Sbjct: 1 MIGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGVDIKYF 60 Query: 173 YFGDEVIVPKSIKR 186 DE I + Sbjct: 61 KNNDEKENDSFISK 74 >gi|323693266|ref|ZP_08107484.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502749|gb|EGB18593.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] Length = 151 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 25 IRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + Q D+ G +I+ +R + TQ+E+A N A++ +E + + + Sbjct: 1 MNQEQTDITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVSEPDLNTLKKICYL 60 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + D + + K++ + Y + L Sbjct: 61 FGVHMDDFAKEVITKMETYEKKEKRQFNKYDMAIGL 96 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R GM+Q E L + LSN+E+ + P++ +KI + H+D Sbjct: 12 KQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVSEPDLNTLKKICYLFGVHMDDF--- 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 + I + + + +K + +K Sbjct: 69 ----AKEVITKMETYEKKEKRQFNK 89 >gi|229100652|ref|ZP_04231502.1| hypothetical protein bcere0020_58240 [Bacillus cereus Rock3-29] gi|228682832|gb|EEL36860.1| hypothetical protein bcere0020_58240 [Bacillus cereus Rock3-29] Length = 142 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+++K R++ + +Q+++A AV +E+ I + L + YE++ D + Sbjct: 5 NLGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVTIDEL 64 Query: 91 YDG 93 G Sbjct: 65 IKG 67 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 33/67 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G++LK R+ K SQ + + +G+ + +E ++ P+I + + + Sbjct: 1 MNNMNLGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVT 60 Query: 169 LDWIYFG 175 +D + G Sbjct: 61 IDELIKG 67 >gi|229175036|ref|ZP_04302554.1| Transcriptional regulator, MerR [Bacillus cereus MM3] gi|228608404|gb|EEK65708.1| Transcriptional regulator, MerR [Bacillus cereus MM3] Length = 181 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 38/99 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRL 100 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKVVKKVER 77 >gi|225377108|ref|ZP_03754329.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans DSM 16841] gi|225211013|gb|EEG93367.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans DSM 16841] Length = 178 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 33/81 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G+ I+ RK TQ+EMA AVN +ENG + I + IS D Sbjct: 3 QMQIGSVIRKYRKECGLTQEEMAKRLGVTTPAVNKWENGNTNPDIELLAPIARLLHISLD 62 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + + E T +++ Sbjct: 63 TLLSFQEKLTDMEIETLIRQM 83 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 41/90 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG+ ++ RK+ G++Q E K LG+ ++ +E G T P+I+ I ++ Sbjct: 1 MTQMQIGSVIRKYRKECGLTQEEMAKRLGVTTPAVNKWENGNTNPDIELLAPIARLLHIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 LD + E + I+ K K+ Sbjct: 61 LDTLLSFQEKLTDMEIETLIRQMGDKLEKE 90 >gi|153940644|ref|YP_001392517.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|152936540|gb|ABS42038.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|295320504|gb|ADG00882.1| putative transcriptional regulator [Clostridium botulinum F str. 230613] Length = 121 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 39/89 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K++R +QK++A S V + E+G + + N + +S D++ Sbjct: 3 NLGERLKELRNEAKLSQKDLAKKLGLSSSTVGMIESGKREGNKETIQKIANFFGVSIDYL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 Y +V + + LD ++ Sbjct: 63 YGNDVEEITKTESLIDNFLDRLIQEGIIQ 91 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R + +SQ + K LG+ +ST+ E G+ + +KI +D++Y Sbjct: 6 ERLKELRNEAKLSQKDLAKKLGLSSSTVGMIESGKREGNKETIQKIANFFGVSIDYLYGN 65 Query: 176 DEVIVPKS 183 D + K+ Sbjct: 66 DVEEITKT 73 >gi|309776485|ref|ZP_07671468.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915752|gb|EFP61509.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 303 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 1/97 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ +RK + +Q+E+A + AV+ +EN L + N + +S D++ Sbjct: 2 KFGEKLQKLRKESGISQEELASRLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVSMDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 E + ++ + + R + + Sbjct: 62 LKDEGGESLPQEPGYYASRECVQGYLH-QEKRTTRRI 97 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L+ +RK+ G+SQ E L + +S +E + PE + I + +D+ Sbjct: 1 MKFGEKLQKLRKESGISQEELASRLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVSMDY 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLKDE 65 >gi|239815284|ref|YP_002944194.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801861|gb|ACS18928.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 135 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 42/111 (37%) Query: 13 SLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 +L + I+ E RQ++ +G RI +RKA + Q ++A + + +E G Sbjct: 7 TLSPPAVTISTEERQFFVAMGERIAQLRKARSLPQTQLAEALGVAQQTLQAYEAGTRRIP 66 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + + ++ + ++ R K A+L R+ Sbjct: 67 VSALPTVARTLSVTLEELFGKGQQAARTRRGPVPKWEQQMEAIAQLPKARQ 117 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 34/83 (40%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + ++ ++R A+G R+ +RK + + Q + + LG+ TL YE G Sbjct: 3 LFPSTLSPPAVTISTEERQFFVAMGERIAQLRKARSLPQTQLAEALGVAQQTLQAYEAGT 62 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 + + + L+ ++ Sbjct: 63 RRIPVSALPTVARTLSVTLEELF 85 >gi|226325593|ref|ZP_03801111.1| hypothetical protein COPCOM_03406 [Coprococcus comes ATCC 27758] gi|225205717|gb|EEG88071.1| hypothetical protein COPCOM_03406 [Coprococcus comes ATCC 27758] Length = 336 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I + RK N +Q+E+A AV+ +E+ ++ L + + +S D++ Sbjct: 3 LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFCVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKR 108 E+ + +R Sbjct: 63 KDEMKAENITYQESTER 79 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 36/87 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + RK G SQ E LG+ +S +E +P+++ ++ ++ D++ + Sbjct: 7 ITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFCVSTDYLLKDEM 66 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + K +++N Sbjct: 67 KAENITYQESTERYAEPLKKVTMENAN 93 >gi|229192127|ref|ZP_04319095.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] gi|228591334|gb|EEK49185.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] Length = 118 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 31/77 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI ++RK TQ+++ + ++ +E G S L + + + D+++ Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPTDYLF 63 Query: 92 DGEVIDRRYEDVTNKKR 108 + + + Sbjct: 64 GKSDNSIKSSNNIKEIF 80 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 37/73 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+ +RK++ ++Q + G+ +G+ T+S YE+G IP + K+ D Sbjct: 1 MNIIGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPTD 60 Query: 171 WIYFGDEVIVPKS 183 +++ + + S Sbjct: 61 YLFGKSDNSIKSS 73 >gi|332365448|gb|EGJ43209.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 168 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 38/85 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 + + + ++ D Y Sbjct: 62 LLEDGDKPEIKSILSEDEKDRYYKE 86 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 172 IYF--GDEVIVPKSIKRAKGNQSSKKSK 197 + GD+ + + + ++ K+ K Sbjct: 61 LLLEDGDKPEIKSILSEDEKDRYYKEVK 88 >gi|306823918|ref|ZP_07457292.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309802457|ref|ZP_07696564.1| DNA-binding helix-turn-helix protein [Bifidobacterium dentium JCVIHMP022] gi|304552916|gb|EFM40829.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308221057|gb|EFO77362.1| DNA-binding helix-turn-helix protein [Bifidobacterium dentium JCVIHMP022] Length = 408 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 35/82 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R + M+Q + LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + GD I+ + + S+ Sbjct: 61 LVMGDVRRPNSGIRESTADTST 82 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 30/66 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N TQ+++A+ A++ +E+ + L + + + ++ D + G Sbjct: 5 ENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDDLVMG 64 Query: 94 EVIDRR 99 +V Sbjct: 65 DVRRPN 70 >gi|171741654|ref|ZP_02917461.1| hypothetical protein BIFDEN_00740 [Bifidobacterium dentium ATCC 27678] gi|283455032|ref|YP_003359596.1| Xre-type transcriptional regulator [Bifidobacterium dentium Bd1] gi|171277268|gb|EDT44929.1| hypothetical protein BIFDEN_00740 [Bifidobacterium dentium ATCC 27678] gi|283101666|gb|ADB08772.1| Xre-type transcriptional regulator [Bifidobacterium dentium Bd1] Length = 408 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 35/82 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R + M+Q + LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + GD I+ + + S+ Sbjct: 61 LVMGDVRRPNSGIRESTADTST 82 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 30/66 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N TQ+++A+ A++ +E+ + L + + + ++ D + G Sbjct: 5 ENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDDLVMG 64 Query: 94 EVIDRR 99 +V Sbjct: 65 DVRRPN 70 >gi|307287627|ref|ZP_07567670.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306501365|gb|EFM70668.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315165024|gb|EFU09041.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 183 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 32/91 (35%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ +G+ + + + Sbjct: 62 YTYLLEGDYVKENPVVKKTETVTQHSEDHSY 92 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ G Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLEG 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|291549706|emb|CBL25968.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 345 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 31/86 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G IK RK TQ+EMA AVN +EN I + +IS D + Sbjct: 2 DIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 E +++D Sbjct: 62 LSFHEKLSDTEIEEIIRKMDRMFSEE 87 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K RK+ GM+Q E LG+ ++ +E + P+I+ I ++ LD + E Sbjct: 7 IKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDTLLSFHE 66 Query: 178 VIVPKSIKR 186 + I+ Sbjct: 67 KLSDTEIEE 75 >gi|223984183|ref|ZP_03634332.1| hypothetical protein HOLDEFILI_01625 [Holdemania filiformis DSM 12042] gi|223963841|gb|EEF68204.1| hypothetical protein HOLDEFILI_01625 [Holdemania filiformis DSM 12042] Length = 321 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G +I +R+ N TQ+ A A++ +E + + + + + Sbjct: 1 MKTLGEKIAGLRQEKNMTQQAFADVMGVTRQAISNWERNKTEPDVAALKKIGQIFGVDMN 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++R+ D RL + L Sbjct: 61 DLLTDIHLERQAIDTRPLTRLFLAILATHL 90 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++ +R++K M+Q F ++G+ +SN+E+ +T P++ +KI Q+ ++ Sbjct: 1 MKTLGEKIAGLRQEKNMTQQAFADVMGVTRQAISNWERNKTEPDVAALKKIGQIFGVDMN 60 Query: 171 WIYFG 175 + Sbjct: 61 DLLTD 65 >gi|167740855|ref|ZP_02413629.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167826439|ref|ZP_02457910.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167913192|ref|ZP_02500283.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167921137|ref|ZP_02508228.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|217423144|ref|ZP_03454646.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|226193468|ref|ZP_03789073.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254192687|ref|ZP_04899123.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13] gi|169649442|gb|EDS82135.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13] gi|217394052|gb|EEC34072.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|225934350|gb|EEH30332.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] Length = 202 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 + T +P VG +I+ +R T +++ A +S ++ E + +I Sbjct: 8 RRTTAPASPATGATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIA 67 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 A L N IS D ++ Sbjct: 68 VAWRLTNALGISLDELFAQPKAPETIRVDGPH 99 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 27 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFA- 85 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 86 -QPKAPETIR 94 >gi|53716036|ref|YP_104861.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|53721043|ref|YP_110028.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|67642050|ref|ZP_00440812.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|121596499|ref|YP_990749.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381530|ref|YP_001025232.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126447905|ref|YP_001077212.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134283993|ref|ZP_01770688.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|166998988|ref|ZP_02264838.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167821625|ref|ZP_02453305.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|254179132|ref|ZP_04885785.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254204277|ref|ZP_04910635.1| DNA-binding protein [Burkholderia mallei FMH] gi|254209445|ref|ZP_04915790.1| DNA-binding protein [Burkholderia mallei JHU] gi|254301893|ref|ZP_04969335.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e] gi|254359589|ref|ZP_04975861.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52211457|emb|CAH37447.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52422006|gb|AAU45576.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121224297|gb|ABM47828.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126240759|gb|ABO03871.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134244604|gb|EBA44703.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|147744814|gb|EDK51896.1| DNA-binding protein [Burkholderia mallei FMH] gi|147749965|gb|EDK57037.1| DNA-binding protein [Burkholderia mallei JHU] gi|148028776|gb|EDK86736.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157825063|gb|EDO88955.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e] gi|160694650|gb|EDP84659.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|238523111|gb|EEP86551.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243064807|gb|EES46993.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|261826366|gb|ABM99779.2| DNA-binding protein [Burkholderia mallei NCTC 10229] Length = 202 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 + T +P VG +I+ +R T +++ A +S ++ E + +I Sbjct: 8 RRTTAPASPATGATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIA 67 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 A L N IS D ++ Sbjct: 68 VAWRLTNALGISLDELFAQPKAPETIRVDGPH 99 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 27 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFA- 85 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 86 -QPKAPETIR 94 >gi|257876195|ref|ZP_05655848.1| predicted protein [Enterococcus casseliflavus EC20] gi|257810361|gb|EEV39181.1| predicted protein [Enterococcus casseliflavus EC20] Length = 284 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 17/159 (10%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +I RK N TQ +A AV+ +E G I L ++S D Sbjct: 6 MRKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAILDLSID 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + ++ + + + +K Q L+ Sbjct: 66 ELLGKPAAAVQHYQAGTAQPEEIAELAPLIK--------PQELSA-LIQEEPF------- 109 Query: 149 GRTIPEIKPARKIK-QVTKKHLDWIYFGDEVIVPKSIKR 186 T ++ ++ +T L + G E I + ++ Sbjct: 110 QETSLDLDLLPRLAPHLTSADLQHLLNGAENIPEEVLEE 148 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 34/68 (50%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + IG ++ + RK+K ++Q L + +SN+E+G ++P+I+ ++ + Sbjct: 1 MSEFNMRKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAIL 60 Query: 166 KKHLDWIY 173 +D + Sbjct: 61 DLSIDELL 68 >gi|253576542|ref|ZP_04853871.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844179|gb|EES72198.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 72 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R + TQ+++A N ++ + +ENG + L N Y +S D+I Sbjct: 3 KRIRDLRVDRDLTQQQLAEHLNISQATYSRYENGNLDVPSSVLIKLANFYNVSIDYILGQ 62 Query: 94 EVIDRRYEDV 103 +R + Sbjct: 63 TNNSKRSNEK 72 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R D+ ++Q + + L + +T S YE G K+ +D+I Sbjct: 1 MYKRIRDLRVDRDLTQQQLAEHLNISQATYSRYENGNLDVPSSVLIKLANFYNVSIDYIL 60 >gi|254512558|ref|ZP_05124624.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221532557|gb|EEE35552.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 468 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 45/117 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ +TQ EMA S +NL EN S S++ + + Y I + + Sbjct: 6 IGPRLRQLRRDQKQTQAEMARNLGVSPSYINLLENNQRSLSVQMLMSIAEAYAIDWRELT 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 E R + + ++ +R + L + + + E+ Sbjct: 66 KDESTRRVADLRNVVQDPVFTGERPDVQELRGAIDHAPRLVNNFLQLHQAHRNALEK 122 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L+ +R+D+ +Q E + LG+ S ++ E + ++ I + +DW Sbjct: 10 LRQLRRDQKQTQAEMARNLGVSPSYINLLENNQRSLSVQMLMSIAEAY--AIDW 61 >gi|210621011|ref|ZP_03292396.1| hypothetical protein CLOHIR_00339 [Clostridium hiranonis DSM 13275] gi|210154995|gb|EEA86001.1| hypothetical protein CLOHIR_00339 [Clostridium hiranonis DSM 13275] Length = 214 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 5/98 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ R+K +RK N TQ+++ N S +E G + L + Y +S D Sbjct: 9 MANLQDRLKSLRKENKYTQEDIGKFLNMTTSGYGYYEQGKNKPPLEILQKLASLYSVSLD 68 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 ++ + + N+ ++D L S+R G Sbjct: 69 YLLGNDD-----VRLKNEIKIDNVVKLPVLGSVRAGTG 101 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 41/77 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + RLKS+RK+ +Q + GK L M S YEQG+ P ++ +K+ + Sbjct: 7 VEMANLQDRLKSLRKENKYTQEDIGKFLNMTTSGYGYYEQGKNKPPLEILQKLASLYSVS 66 Query: 169 LDWIYFGDEVIVPKSIK 185 LD++ D+V + IK Sbjct: 67 LDYLLGNDDVRLKNEIK 83 >gi|191636942|ref|YP_001986108.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|190711244|emb|CAQ65250.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|327380969|gb|AEA52445.1| hypothetical protein LC2W_0109 [Lactobacillus casei LC2W] gi|327384145|gb|AEA55619.1| hypothetical protein LCBD_0119 [Lactobacillus casei BD-II] Length = 373 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I RK TQ+ +A +++V+ +E G I L +++S D + Sbjct: 4 NVGAVISAHRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDKL 63 Query: 91 YDGEVI----DRRYEDVTNKKRLDPYAIGARLKSIR 122 + + R + K+ + A LKSIR Sbjct: 64 MAYDAQLSSTEIRRIYTSMKQAFETQPGDAVLKSIR 99 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A + + RK KG++Q +G+ +++S +E G++ P+I + +D + Sbjct: 7 AVISAHRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDKLMAY 66 Query: 176 DEVIVPKSIKR 186 D + I+R Sbjct: 67 DAQLSSTEIRR 77 >gi|126731243|ref|ZP_01747050.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126708154|gb|EBA07213.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 206 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 KSL P+ D+G R++++RK + T ++ A A S ++ ENG S Sbjct: 6 KSLIRIARETGPDTVAEPLDLGLRVRELRKEKDWTLEQAAKKAGLARSTLSKIENGQMSP 65 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 + L EIS ++ V + + Sbjct: 66 TYDALKKLATGLEISVPQLFTPPVQAQANGRM 97 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ +RK+K + + K G+ STLS E G+ P +K+ + + ++ Sbjct: 30 VRELRKEKDWTLEQAAKKAGLARSTLSKIENGQMSPTYDALKKLATGLEISVPQLFT 86 >gi|291548443|emb|CBL21551.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 345 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK RK + TQ+EMA AVN +E G + I + IS D + Sbjct: 2 NIGNVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSNPDIELLAPIARLLHISLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 E + +D Sbjct: 62 LSFHENLTDVEITELIQEMDKMFSAE 87 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K RK+ G +Q E LG+ ++ +E G + P+I+ I ++ LD Sbjct: 1 MNIGNVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSNPDIELLAPIARLLHISLDT 60 Query: 172 IYFGDEVIVPKSIKR 186 + E + I Sbjct: 61 LLSFHENLTDVEITE 75 >gi|319939789|ref|ZP_08014145.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus 1_2_62CV] gi|319811002|gb|EFW07317.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus 1_2_62CV] Length = 133 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G I +RKA TQ E+A + AV+ +E + I L + ++ S D Sbjct: 4 QTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTSVDE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLD 110 + G+ + + + +D Sbjct: 64 LMQGQTVMKENKKNRKSDIVD 84 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G + S+RK KGM+Q+E + +G+ + +S +E+ + P+I K+ + Sbjct: 1 MKKQTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 +D + G V+ K N+ ++KS Sbjct: 61 VDELMQGQTVM--------KENKKNRKSD 81 >gi|325265475|ref|ZP_08132198.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029333|gb|EGB90625.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 206 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +RK N TQ+++A +AV+ +E+G +I + +E++ D + Sbjct: 2 EFNEKLQQLRKKKNLTQEQLAEQLYVSRTAVSKWESGRGYPNIESLKCISKLFEVTIDEL 61 Query: 91 YDGEV 95 + Sbjct: 62 LSSDE 66 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +RK K ++Q + + L + + +S +E GR P I+ + I ++ + +D Sbjct: 1 MEFNEKLQQLRKKKNLTQEQLAEQLYVSRTAVSKWESGRGYPNIESLKCISKLFEVTIDE 60 Query: 172 IYFGDEVIV 180 + DE+I Sbjct: 61 LLSSDELIT 69 >gi|257879453|ref|ZP_05659106.1| predicted protein [Enterococcus faecium 1,230,933] gi|257813681|gb|EEV42439.1| predicted protein [Enterococcus faecium 1,230,933] gi|295100939|emb|CBK98484.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 101 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK +RK + TQ+++A + + E G SI A+ L +E + D+I+ Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIFL 98 Query: 93 GEV 95 G Sbjct: 99 GRE 101 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 40/87 (45%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + K D G R+K++RK+ G++Q + + LG+ +T++ E G Sbjct: 15 VFDFATSQIQKHGGTKMYYDLVESGKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGN 74 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDE 177 I A ++ + LD+I+ G E Sbjct: 75 RGISIDLAIELVVRFETTLDYIFLGRE 101 >gi|257877872|ref|ZP_05657525.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257812038|gb|EEV40858.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 110 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 14/108 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R N+TQ+++A +A + FEN + L +++S D++ Sbjct: 2 LGERLRTLRLRTNQTQQQIADQLGITRAAYSHFENDRNEPDGETIVKLAEIFQVSTDFLL 61 Query: 92 DGEVIDRRYED--------------VTNKKRLDPYAIGARLKSIRKDK 125 +V + VT+++ D + +K K Sbjct: 62 GRQVPAGFTQPSAKVQTVAAHIDDDVTDEQMEDILSYIEFIKQRHAQK 109 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RL+++R +Q + LG+ + S++E R P+ + K+ ++ + D++ Sbjct: 1 MLGERLRTLRLRTNQTQQQIADQLGITRAAYSHFENDRNEPDGETIVKLAEIFQVSTDFL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|302523303|ref|ZP_07275645.1| regulatory protein [Streptomyces sp. SPB78] gi|318062276|ref|ZP_07980997.1| regulatory protein [Streptomyces sp. SA3_actG] gi|318080822|ref|ZP_07988154.1| regulatory protein [Streptomyces sp. SA3_actF] gi|302432198|gb|EFL04014.1| regulatory protein [Streptomyces sp. SPB78] Length = 219 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 30/90 (33%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 Q VG R++ +RK T ++ S ++ E+G+ ++ L L + + Sbjct: 30 EQILAGVGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRV 89 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 + D + + R Sbjct: 90 ALDELVGTRPVADPRVRAEPIVRHHRRMYP 119 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ +RK++GM+ G+ STLS E G P ++ + + + LD + Sbjct: 38 ERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 95 >gi|312127026|ref|YP_003991900.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311777045|gb|ADQ06531.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 267 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ N TQ E+A + ++ +E G+ I + +++S D++ Sbjct: 9 RLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIAMYFDVSSDYLLGIS 68 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSI 121 I +R L +K + Sbjct: 69 SIKKRDFL----NSLGKITKEENIKEL 91 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ RLK +R++ ++Q E + LG+ +TLSNYE G P+I +KI Sbjct: 1 MEENIFAVRLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIAMYFDVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 D++ G I + + G + +++ K+ K Sbjct: 61 SDYLL-GISSIKKRDFLNSLGKITKEENIKELKD 93 >gi|283479863|emb|CAY75779.1| HTH-type transcriptional regulator immR [Erwinia pyrifoliae DSM 12163] gi|283479872|emb|CAY75788.1| HTH-type transcriptional regulator immR [Erwinia pyrifoliae DSM 12163] Length = 167 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 31/87 (35%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D G R+ +RK TQ E+A + + +E G Y + L E+S D Sbjct: 48 MTDFGKRLAALRKERQLTQIELANLLDIQPRMLGRWEQGQVKPQFDYIIKLAQFLEVSTD 107 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIG 115 ++ GE KRL Sbjct: 108 YMLLGEEDTAAPVFDIKNKRLKELCKQ 134 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RL ++RK++ ++QIE LL + L +EQG+ P+ K+ Q + D Sbjct: 48 MTDFGKRLAALRKERQLTQIELANLLDIQPRMLGRWEQGQVKPQFDYIIKLAQFLEVSTD 107 Query: 171 WIYFGDEVIV 180 ++ G+E Sbjct: 108 YMLLGEEDTA 117 >gi|212697366|ref|ZP_03305494.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] gi|212675558|gb|EEB35165.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] Length = 199 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK+ RK N TQ+ +A N AV+ +E G+ S+ + L + + + Sbjct: 34 IGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGVDIKYFK 93 Query: 92 DGEVIDRRYE 101 + + + Sbjct: 94 NKDDKENESF 103 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 35/75 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + IG ++K+ RK+ ++Q K L + +S +E+G + P + K+ ++ + + Sbjct: 32 FMIGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGVDIKY 91 Query: 172 IYFGDEVIVPKSIKR 186 D+ I + Sbjct: 92 FKNKDDKENESFISK 106 >gi|218528591|ref|YP_002419407.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520894|gb|ACK81479.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 198 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 34/70 (48%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + E R K +G +I+ +R+ + + +++ A+ +S ++ E+G S S+ + + Sbjct: 10 SAEERPLEKALGHQIRRLRRERDLSLSDLSSAADVSQSMISKIEHGAISPSLASINAIAS 69 Query: 82 EYEISFDWIY 91 + ++ Sbjct: 70 ALNVPITALF 79 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G +++ +R+++ +S + + S +S E G P + I + + Sbjct: 19 ALGHQIRRLRRERDLSLSDLSSAADVSQSMISKIEHGAISPSLASINAIASALNVPITAL 78 Query: 173 Y-FGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +E +K +G + K Sbjct: 79 FAAFEETRDCSHVKHGQGVPIERHGTKS 106 >gi|270284174|ref|ZP_05965683.2| putative helix-turn-helix protein [Bifidobacterium gallicum DSM 20093] gi|270277253|gb|EFA23107.1| putative helix-turn-helix protein [Bifidobacterium gallicum DSM 20093] Length = 365 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 35/88 (39%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E + + +R + TQ+++A+ A++ +E+G + L + Sbjct: 8 VNGESGEEIMTFSDNLVSLRANRHMTQEQLAMLVGVSRQAISKWESGKAYPEMDKLLIIC 67 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKR 108 + + +S D + G+V V + Sbjct: 68 DLFTVSLDDLVLGDVTQPAPPAVRPTSQ 95 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 ++DV + + L S+R ++ M+Q + L+G+ +S +E G+ PE+ Sbjct: 2 PPHHQDVNGESGEEIMTFSDNLVSLRANRHMTQEQLAMLVGVSRQAISKWESGKAYPEMD 61 Query: 157 PARKIKQVTKKHLDWIYFGD 176 I + LD + GD Sbjct: 62 KLLIICDLFTVSLDDLVLGD 81 >gi|313885500|ref|ZP_07819250.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619230|gb|EFR30669.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 327 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 32/71 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK N +Q+E A +V+ +E + + + + + +S D++ Sbjct: 3 LADKIIELRKKNGWSQEEFAEMLGVSRQSVSKWEGAQSTPELNRLIQMSKIFSVSTDYLL 62 Query: 92 DGEVIDRRYED 102 +V + E Sbjct: 63 KDDVENLDPEQ 73 Score = 74.6 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD- 176 + +RK G SQ EF ++LG+ ++S +E ++ PE+ ++ ++ D++ D Sbjct: 7 IIELRKKNGWSQEEFAEMLGVSRQSVSKWEGAQSTPELNRLIQMSKIFSVSTDYLLKDDV 66 Query: 177 EVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 E + P ++A + K + +N Sbjct: 67 ENLDP---EQADLEWLEDRRKFSLEEAN 91 >gi|307266068|ref|ZP_07547614.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918937|gb|EFN49165.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 182 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 33/88 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +RK T KE+ ++A +E SI + + + +++S D++ Sbjct: 2 IGERLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 I + + K Sbjct: 62 GRTNIREPQFVEKANIQSEFLKEFEWSK 89 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 49/93 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG RLK +RK+KG++ E G+++G+ ++ + YE+ R P I+ KI + LD++ Sbjct: 1 MIGERLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + P+ +++A K + K +P Sbjct: 61 LGRTNIREPQFVEKANIQSEFLKEFEWSKIGDP 93 >gi|303233322|ref|ZP_07319992.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4] gi|302480567|gb|EFL43657.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4] Length = 328 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 32/86 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK N +Q+E+A +V+ +E + + L + +S D + Sbjct: 3 LADKILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDLLV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 E+ ++ A Sbjct: 63 KDEIDVMEKNVDADEAACQEEAGVRM 88 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 34/68 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +RK G SQ E LG+ ++S +E ++IP+++ + ++ D + + Sbjct: 7 ILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDLLVKDEI 66 Query: 178 VIVPKSIK 185 ++ K++ Sbjct: 67 DVMEKNVD 74 >gi|297198022|ref|ZP_06915419.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|297146969|gb|EFH28433.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 190 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R++ +RK T ++ S ++ E+G+ S+ L + +++ D + Sbjct: 9 EVGPRLRRLRKDREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIAQAHQVPLDEL 68 Query: 91 Y 91 Sbjct: 69 V 69 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+ +RKD+ ++ + G+ STLS E G P ++ I Q + LD + Sbjct: 14 LRRLRKDREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIAQAHQVPLDELVGAPP 73 Query: 175 -GDEVIVPKSIKR 186 GD + ++R Sbjct: 74 VGDPRVRSAPLER 86 >gi|291521013|emb|CBK79306.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 345 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 31/86 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G IK RK TQ+EMA AVN +EN I + +IS D + Sbjct: 2 DIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 E +++D Sbjct: 62 LSFHENLSDTEIEEIIRKMDRMFSEE 87 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K RK+ GM+Q E LG+ ++ +E + P+I+ I ++ LD + E Sbjct: 7 IKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDTLLSFHE 66 Query: 178 VIVPKSIKR 186 + I+ Sbjct: 67 NLSDTEIEE 75 >gi|259907780|ref|YP_002648136.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|259909771|ref|YP_002650127.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|259909778|ref|YP_002650134.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224963402|emb|CAX54890.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965393|emb|CAX56925.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965400|emb|CAX56932.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|283477642|emb|CAY73558.1| HTH-type transcriptional regulator immR [Erwinia pyrifoliae DSM 12163] Length = 132 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 31/87 (35%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D G R+ +RK TQ E+A + + +E G Y + L E+S D Sbjct: 13 MTDFGKRLAALRKERQLTQIELANLLDIQPRMLGRWEQGQVKPQFDYIIKLAQFLEVSTD 72 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIG 115 ++ GE KRL Sbjct: 73 YMLLGEEDTAAPVFDIKNKRLKELCKQ 99 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RL ++RK++ ++QIE LL + L +EQG+ P+ K+ Q + D Sbjct: 13 MTDFGKRLAALRKERQLTQIELANLLDIQPRMLGRWEQGQVKPQFDYIIKLAQFLEVSTD 72 Query: 171 WIYFGDEVIV 180 ++ G+E Sbjct: 73 YMLLGEEDTA 82 >gi|225376313|ref|ZP_03753534.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans DSM 16841] gi|225211689|gb|EEG94043.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans DSM 16841] Length = 110 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 3/104 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G +IK R+ TQ+ +A + S ++ E G + S+ + + N S D Sbjct: 6 FKVIGLKIKQRRQELGITQEYIANALDVNPSHISNIECGRANPSLTALIKIANILSCSVD 65 Query: 89 WIYDGEVI---DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + E ++ E + K +D K R K + Sbjct: 66 YFISDEYTFEINKNREKTLDDKIIDKIKYCDTDKKTRILKMIDL 109 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 LD IG ++K R++ G++Q L + S +SN E GR P + KI + Sbjct: 1 MADLDFKVIGLKIKQRRQELGITQEYIANALDVNPSHISNIECGRANPSLTALIKIANIL 60 Query: 166 KKHLDWIYFGD 176 +D+ + Sbjct: 61 SCSVDYFISDE 71 >gi|229815067|ref|ZP_04445404.1| hypothetical protein COLINT_02109 [Collinsella intestinalis DSM 13280] gi|229809297|gb|EEP45062.1| hypothetical protein COLINT_02109 [Collinsella intestinalis DSM 13280] Length = 206 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +IK R+A +Q+++A ++ +E ++ L L ++ S D + Sbjct: 2 DISNQIKTRREAMGLSQEQLAEKLYVSRQTISNWERDKTYPDVQSLLMLSVLFDTSIDTL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G+V ++K Sbjct: 62 VKGDVTVMEEAVERDRKY 79 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 43/77 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K+ R+ G+SQ + + L + T+SN+E+ +T P+++ + + +D Sbjct: 1 MDISNQIKTRREAMGLSQEQLAEKLYVSRQTISNWERDKTYPDVQSLLMLSVLFDTSIDT 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + GD ++ ++++R + Sbjct: 61 LVKGDVTVMEEAVERDR 77 >gi|145226144|ref|YP_001136798.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145218607|gb|ABP48010.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] Length = 232 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 20/139 (14%) Query: 37 KDIRK---ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 K R+ T+K +A G + ++ +G + S++ + + + G Sbjct: 12 KAFREACDKAGMTKKAIAAGLGVTPTTLSSLYSGRSTPSLKLLTKIVDFFG--------G 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 +++D LK R G++Q K + + S +S +E G+ P Sbjct: 64 DLVDFLEMPARQ---------RWELKHFRIAAGLTQAALAKRINVAPSAVSGWELGKYSP 114 Query: 154 EIKPARKIKQVTKKHLDWI 172 + + + Sbjct: 115 PAALRPVLADLYGVPESDL 133 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +K R A TQ +A N SAV+ +E G S L + Y + + Sbjct: 79 LKHFRIAAGLTQAALAKRINVAPSAVSGWELGKYSPPAALRPVLADLYGVPESDL 133 Score = 42.6 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL-D 170 + + GM++ LG+ +TLS+ GR+ P +K KI L D Sbjct: 8 FFSAKAFREACDKAGMTKKAIAAGLGVTPTTLSSLYSGRSTPSLKLLTKIVDFFGGDLVD 67 Query: 171 WI 172 ++ Sbjct: 68 FL 69 >gi|297560986|ref|YP_003679960.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845434|gb|ADH67454.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 194 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 26/85 (30%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E VG R++ +R + T ++ S ++ E+G + L L Sbjct: 1 MDDEFDAVLSAVGPRLRALRHRHGITLTALSETTGIAVSTLSRLESGQRRPGLELLLPLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTN 105 Y + D + Sbjct: 61 KAYNVPLDELVGAPANGDPRVYPRP 85 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R G++ + G+ STLS E G+ P ++ + + LD + Sbjct: 11 AVGPRLRALRHRHGITLTALSETTGIAVSTLSRLESGQRRPGLELLLPLAKAYNVPLDEL 70 Query: 173 Y----FGDEVIVPKSIKR 186 GD + P+ R Sbjct: 71 VGAPANGDPRVYPRPTVR 88 >gi|328949375|ref|YP_004366712.1| hypothetical protein Tresu_2553 [Treponema succinifaciens DSM 2489] gi|328449699|gb|AEB15415.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 93 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 35/79 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I+++R +Q ++A + +V+ +EN SI + + N +E+S D++ Sbjct: 4 EQIRELRNIRGISQIQLANKLGVTKQSVSNWENDNILPSIEMLVKIANFFEVSTDYLLGL 63 Query: 94 EVIDRRYEDVTNKKRLDPY 112 + + + ++ Sbjct: 64 DKKRTLDVENLTEIQISHI 82 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +++ +R +G+SQI+ LG+ ++SN+E +P I+ KI + D++ Sbjct: 1 MLNEQIRELRNIRGISQIQLANKLGVTKQSVSNWENDNILPSIEMLVKIANFFEVSTDYL 60 Query: 173 YFGDE 177 D+ Sbjct: 61 LGLDK 65 >gi|258423246|ref|ZP_05686138.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257846575|gb|EEV70597.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 189 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A +++ +EN I L + + ++ D + Sbjct: 2 NLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMICELFNVTLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D+ ++ L+ + + Sbjct: 62 VKG--TIPFVPDIKVQRSLNLWTYVMLI 87 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + L + ++SN+E +++P+I I ++ LD Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMICELFNVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + G VP + N Sbjct: 61 LVKGTIPFVPDIKVQRSLN 79 >gi|257785038|ref|YP_003180255.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473545|gb|ACV51664.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 235 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G RI +R A TQ+ +A N AV+ +E+ + I L +S D Sbjct: 6 ETLGRRIARLRLAKTATQERLAKELNVSPQAVSKWESDINYPDISLLPDLARFLGVSVDE 65 Query: 90 IYDG 93 + G Sbjct: 66 LLSG 69 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 30/85 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ +R K +Q K L + +S +E P+I + + +D + G Sbjct: 10 RRIARLRLAKTATQERLAKELNVSPQAVSKWESDINYPDISLLPDLARFLGVSVDELLSG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 +S+ +G D+ Sbjct: 70 ASAFAQESVAAQEGTAEVVSVAADE 94 >gi|320547716|ref|ZP_08042001.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320447791|gb|EFW88549.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 114 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 33/84 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K +R +Q +A +++ +E G + + + + + +S D + G+ Sbjct: 10 QLKKLRVERKLSQDALAEQLFISRQSISKYETGESTPDLENLIKIADILGVSLDELVLGK 69 Query: 95 VIDRRYEDVTNKKRLDPYAIGARL 118 + E V +K I L Sbjct: 70 KPCKIVERVIERKESSSMNIWEFL 93 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK +R ++ +SQ + L + ++S YE G + P+++ KI + LD Sbjct: 5 MIFSTQLKKLRVERKLSQDALAEQLFISRQSISKYETGESTPDLENLIKIADILGVSLDE 64 Query: 172 IYFGDEV--IVPKSIKRAKGNQSSKKSKKDKK 201 + G + IV + I+R + + + DKK Sbjct: 65 LVLGKKPCKIVERVIERKESSSMNIWEFLDKK 96 >gi|315640521|ref|ZP_07895629.1| DNA-binding protein [Enterococcus italicus DSM 15952] gi|315483725|gb|EFU74213.1| DNA-binding protein [Enterococcus italicus DSM 15952] Length = 209 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K R KTQ+E+A + ++ +EN I L L + Y +S D + Sbjct: 2 KIGEQLKRARSQIGKTQEEVANALHVSRQTISSWENKRSYPDISSLLNLSDYYNLSLDRL 61 Query: 91 YDGEV 95 + Sbjct: 62 LKEDT 66 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R G +Q E L + T+S++E R+ P+I + LD Sbjct: 1 MKIGEQLKRARSQIGKTQEEVANALHVSRQTISSWENKRSYPDISSLLNLSDYYNLSLDR 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D ++ + + + +++ Sbjct: 61 LLKEDTGMIEEIKRNEQLSKTKTM 84 >gi|229021194|ref|ZP_04177833.1| transcriptional regulator, XRE [Bacillus cereus AH1273] gi|228740088|gb|EEL90446.1| transcriptional regulator, XRE [Bacillus cereus AH1273] Length = 108 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G I+D+RK TQKE+A ES + ++E + + + + +S D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTD 60 Query: 89 WIYDGEVIDRRYEDVT------NKKRLDPYAIGARLKSIRKDKGMSQIE 131 ++ + + + N +L P LK R + Q E Sbjct: 61 FLLGRDFNVKEDRNNKELDQWLNDIKLAPSQKREELK--RFWNFIMQEE 107 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +RK KG++Q E + L + ST+ YE+ P+ +I D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTD 60 Query: 171 WIYFGD 176 ++ D Sbjct: 61 FLLGRD 66 >gi|229062058|ref|ZP_04199383.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228717210|gb|EEL68885.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 181 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 38/100 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKIIKKEERKYSVYGKDEQRIEHVAEQGGLRLS 101 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKIIKKEER 77 >gi|329116759|ref|ZP_08245476.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907164|gb|EGE54078.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 113 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 34/70 (48%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ N TQ ++A + + +ENG + + + Y ++ D++ +G+ Sbjct: 6 RLKELRQQKNLTQAKVADSLEITQQSYARWENGKVTPTPEKLSKIAKFYGVTTDYLLEGQ 65 Query: 95 VIDRRYEDVT 104 D +V Sbjct: 66 KDDIDLSNVE 75 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK +R+ K ++Q + L + + + +E G+ P + KI + D+ Sbjct: 1 MTLPYRLKELRQQKNLTQAKVADSLEITQQSYARWENGKVTPTPEKLSKIAKFYGVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G + + S +S +++K Sbjct: 61 LLEGQKDDIDLSNVEVLFRMTSDGLTEEEK 90 >gi|291521725|emb|CBK80018.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 129 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 36/78 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI++ RK + +E+A A+ ++ EN S+ + + N EI+ D + Sbjct: 8 IGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALEITIDELL 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 G ++ E T+ L Sbjct: 68 YGNLLYNPTEYQTDIDLL 85 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ IG R++ RK +G+S E ++ + +S E + P ++ KI + Sbjct: 1 MEINYALIGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALE 60 Query: 167 KHLDWIYFGDEVIVPKSIK 185 +D + +G+ + P + Sbjct: 61 ITIDELLYGNLLYNPTEYQ 79 >gi|227889182|ref|ZP_04006987.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200] gi|227850411|gb|EEJ60497.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200] Length = 161 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D +IK +RK +N TQ+EMA N A+ +E + + + +S D + Sbjct: 2 DFNEQIKRLRKESNLTQEEMAKKLNVTRQAIFNWEKNRNPPDFEMIILIAKTFGVSLDEL 61 Query: 91 YDGEVIDRRYEDV 103 G+ + E Sbjct: 62 ILGDKKMNKIEQT 74 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K +RK+ ++Q E K L + + N+E+ R P+ + I + LD Sbjct: 1 MDFNEQIKRLRKESNLTQEEMAKKLNVTRQAIFNWEKNRNPPDFEMIILIAKTFGVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD+ + + ++ +K Sbjct: 61 LILGDKKMNKIEQTLINDGKRTRAAK 86 >gi|218283250|ref|ZP_03489311.1| hypothetical protein EUBIFOR_01900 [Eubacterium biforme DSM 3989] gi|218216005|gb|EEC89543.1| hypothetical protein EUBIFOR_01900 [Eubacterium biforme DSM 3989] Length = 194 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD+G I +RK NN TQ E+A + + AV+ +E G+ I+ L +S Sbjct: 4 KDMGMFICKLRKENNMTQMELAQQLHVTDKAVSRWERGIGYPDIQLLPALSESLHVSVAE 63 Query: 90 IY-DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + ++ E+VTN + RK +S + Sbjct: 64 LISCKKSLNYSNEEVTNIIHNLDVYKMESFRQDRKADKISLVCM 107 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 32/65 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G + +RK+ M+Q+E + L + + +S +E+G P+I+ + + Sbjct: 1 MNAKDMGMFICKLRKENNMTQMELAQQLHVTDKAVSRWERGIGYPDIQLLPALSESLHVS 60 Query: 169 LDWIY 173 + + Sbjct: 61 VAELI 65 >gi|325697266|gb|EGD39152.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] Length = 167 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 37/85 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 E V ++ + Y Sbjct: 62 LLEESDKPEINPVLSEDEKNRYYKE 86 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + +E P+ ++ ++ K+ K S Sbjct: 61 LLL-EESDKPEINPVLSEDEKNRYYKEVKSYS 91 >gi|295101684|emb|CBK99229.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 255 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + +R+ TQKE+A + AV+ +E G+ I + L + ++ + Sbjct: 9 FGHFLAQLRREKGMTQKELAATLYVSDKAVSKWERGLSVPDISLLVPLAEQLNVTVAELL 68 Query: 92 DGEVIDRRYEDVTN------KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 G ++ +K + A + R K + +LG+ Sbjct: 69 QGRRVEEEQRFTREETEDLIRKAVTFSAEPPERRQARTKKYLPVYVICCVLGV 121 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 41/91 (45%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 LD A G L +R++KGM+Q E L + + +S +E+G ++P+I + + Sbjct: 1 MYELDKAAFGHFLAQLRREKGMTQKELAATLYVSDKAVSKWERGLSVPDISLLVPLAEQL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 + + G V + R + +K+ Sbjct: 61 NVTVAELLQGRRVEEEQRFTREETEDLIRKA 91 >gi|332655055|ref|ZP_08420796.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515915|gb|EGJ45524.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 101 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK +RK + TQ+++A + + E G SI A+ L +E + D+I+ Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIFL 98 Query: 93 GEV 95 G Sbjct: 99 GRE 101 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 40/87 (45%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + E K D G R+K++RK+ G++Q + + LG+ +T++ E G Sbjct: 15 VFDFATSQIQEHGGTKMYYDLVESGKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGN 74 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDE 177 I A ++ + LD+I+ G E Sbjct: 75 RGISIDLAIELVVRFETTLDYIFLGRE 101 >gi|83952018|ref|ZP_00960750.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83837024|gb|EAP76321.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 207 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R++++RKA + T ++ A A S ++ ENG S + L EIS + Sbjct: 26 NLGQRVRELRKARDWTLEQAAKQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQL 85 Query: 91 YDGEVIDRRYEDVTNKK 107 + D+ +T K Sbjct: 86 FTAPQKDQVTGRMTVTK 102 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 20/105 (19%) Query: 70 STSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + + D ++ +P +G R++ +RK + + Sbjct: 3 KPTSDNLIRIAR--------------------DSGGEEHGEPLNLGQRVRELRKARDWTL 42 Query: 130 IEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 + K G+ STLS E G+ P + +K+ + + ++ Sbjct: 43 EQAAKQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQLFT 87 >gi|310828218|ref|YP_003960575.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612] gi|308739952|gb|ADO37612.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612] Length = 197 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + + +RK N +Q +A ++AV+ +E I L + Y ++ D++ Sbjct: 2 NKYRQLRKERNLSQANLAERLGVSQTAVSQWETDKNYPDINTIKQLADIYSVTTDYLLGV 61 Query: 94 EVIDRRYEDV 103 + + ++ Sbjct: 62 DSSRLKKDNE 71 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 33/69 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 + + +RK++ +SQ + LG+ + +S +E + P+I +++ + D++ Sbjct: 1 MNKYRQLRKERNLSQANLAERLGVSQTAVSQWETDKNYPDINTIKQLADIYSVTTDYLLG 60 Query: 175 GDEVIVPKS 183 D + K Sbjct: 61 VDSSRLKKD 69 >gi|289769326|ref|ZP_06528704.1| DNA-binding protein [Streptomyces lividans TK24] gi|289699525|gb|EFD66954.1| DNA-binding protein [Streptomyces lividans TK24] Length = 198 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ T ++ ES ++ E+G ++ L L Y++ D + Sbjct: 20 VGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDLV 79 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+++G++ G+ STLS E G+ ++ + ++ LD + Sbjct: 19 AVGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDL 78 Query: 173 Y----FGDEVIVPKSIKR 186 GD I K ++R Sbjct: 79 VGAPRTGDPRIHLKPVRR 96 >gi|198283398|ref|YP_002219719.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247919|gb|ACH83512.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 152 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + D+G RIK+IRK TQ E+ A +SAV+ +ENG + LR I Sbjct: 3 DHMDDIGDRIKEIRKRLGLTQAELGKHAGGLSKSAVHQWENGGTKPAWDALTALRKNLGI 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRL 109 + DW+ GE + N L Sbjct: 63 NPDWVMQGEGAMLQELGTPNAATL 86 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 108 RLDPYAIG-ARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 LD R+K IRK G++Q E GK G + S + +E G T P +++ Sbjct: 1 MLDHMDDIGDRIKEIRKRLGLTQAELGKHAGGLSKSAVHQWENGGTKPAWDALTALRKNL 60 Query: 166 KKHLDWIYFGDEVIVPK 182 + DW+ G+ ++ + Sbjct: 61 GINPDWVMQGEGAMLQE 77 >gi|21223466|ref|NP_629245.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256785428|ref|ZP_05523859.1| DNA-binding protein [Streptomyces lividans TK24] gi|5541920|emb|CAB51134.1| hypothetical protein [Streptomyces coelicolor A3(2)] gi|14717102|emb|CAC44208.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 190 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ T ++ ES ++ E+G ++ L L Y++ D + Sbjct: 12 VGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDLV 71 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+++G++ G+ STLS E G+ ++ + ++ LD + Sbjct: 11 AVGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDL 70 Query: 173 Y----FGDEVIVPKSIKR 186 GD I K ++R Sbjct: 71 VGAPRTGDPRIHLKPVRR 88 >gi|291521015|emb|CBK79308.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 253 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G + ++RK N TQK++A + V+ +E G+ ++ + + + ++S Sbjct: 6 NEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVSVT 65 Query: 89 WIYDGEVIDRRYEDVTNKKRL-----DPYAIGARLKSIRKD 124 + GE IDR+ T + A+ + RK+ Sbjct: 66 ELLRGEKIDRQKNIDTKEVEELVVGSLDMAVSNSIHRHRKN 106 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 37/72 (51%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK+K ++Q + + L + + T+S +E+G ++P + I + + + G+++ Sbjct: 15 ELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVSVTELLRGEKID 74 Query: 180 VPKSIKRAKGNQ 191 K+I + + Sbjct: 75 RQKNIDTKEVEE 86 >gi|227508341|ref|ZP_03938390.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192159|gb|EEI72226.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 237 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ +IK RK N TQK++A ++ +ENG R + L +EI Sbjct: 22 IMTELSKKIKQYRKEKNLTQKQLAEKMFVSRKLISNWENGRNFPDFRAMIRLSEIFEIKI 81 Query: 88 DWIYDGEVIDRRYEDVTNKK 107 D + + + D K+ Sbjct: 82 DDLLKNDNKVIEHFDDQGKQ 101 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 41/87 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K + + ++K RK+K ++Q + + + + +SN+E GR P+ + ++ ++ Sbjct: 18 MKVIIMTELSKKIKQYRKEKNLTQKQLAEKMFVSRKLISNWENGRNFPDFRAMIRLSEIF 77 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQS 192 + +D + D ++ + K + Sbjct: 78 EIKIDDLLKNDNKVIEHFDDQGKQTKK 104 >gi|49484901|ref|YP_042125.1| hypothetical protein SAR2791 [Staphylococcus aureus subsp. aureus MRSA252] gi|221142464|ref|ZP_03566957.1| hypothetical protein SauraJ_12647 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424188|ref|ZP_05600617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426865|ref|ZP_05603267.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429501|ref|ZP_05605888.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432148|ref|ZP_05608511.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435109|ref|ZP_05611160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282907039|ref|ZP_06314887.1| hypothetical protein SDAG_00526 [Staphylococcus aureus subsp. aureus Btn1260] gi|282910017|ref|ZP_06317825.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912265|ref|ZP_06320061.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282912905|ref|ZP_06320697.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282922533|ref|ZP_06330223.1| hypothetical protein SARG_00185 [Staphylococcus aureus subsp. aureus C101] gi|283959476|ref|ZP_06376917.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|293497958|ref|ZP_06665812.1| hypothetical protein SCAG_00531 [Staphylococcus aureus subsp. aureus 58-424] gi|293511548|ref|ZP_06670242.1| hypothetical protein SAZG_00185 [Staphylococcus aureus subsp. aureus M809] gi|293550157|ref|ZP_06672829.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|295429288|ref|ZP_06821910.1| hypothetical protein SIAG_01497 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589210|ref|ZP_06947851.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|304379939|ref|ZP_07362668.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|49243030|emb|CAG41764.1| putative membrane protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257273206|gb|EEV05308.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276496|gb|EEV07947.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279982|gb|EEV10569.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283027|gb|EEV13159.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285705|gb|EEV15821.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|269942291|emb|CBI50706.1| putative membrane protein [Staphylococcus aureus subsp. aureus TW20] gi|282314754|gb|EFB45140.1| hypothetical protein SARG_00185 [Staphylococcus aureus subsp. aureus C101] gi|282323005|gb|EFB53324.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282323961|gb|EFB54277.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282326083|gb|EFB56388.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329938|gb|EFB59459.1| hypothetical protein SDAG_00526 [Staphylococcus aureus subsp. aureus Btn1260] gi|283789068|gb|EFC27895.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|290919204|gb|EFD96280.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|291096889|gb|EFE27147.1| hypothetical protein SCAG_00531 [Staphylococcus aureus subsp. aureus 58-424] gi|291465506|gb|EFF08038.1| hypothetical protein SAZG_00185 [Staphylococcus aureus subsp. aureus M809] gi|295127047|gb|EFG56691.1| hypothetical protein SIAG_01497 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577721|gb|EFH96434.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|302752583|gb|ADL66760.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341519|gb|EFM07429.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436868|gb|ADQ75939.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195216|gb|EFU25604.1| hypothetical protein CGSSa00_04112 [Staphylococcus aureus subsp. aureus CGS00] gi|329315426|gb|AEB89839.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus T0131] Length = 189 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A +++ +EN I L + + + ++ D + Sbjct: 2 NLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCDLFNVTLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D+ ++ L+ + + Sbjct: 62 VKG--TIPFAPDIKAQRSLNLWTYVMLI 87 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + L + ++SN+E +++P+I + + LD Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCDLFNVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + G P + N Sbjct: 61 LVKGTIPFAPDIKAQRSLN 79 >gi|282902623|ref|ZP_06310516.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|282918060|ref|ZP_06325810.1| hypothetical protein SATG_00962 [Staphylococcus aureus subsp. aureus D139] gi|282921282|ref|ZP_06329000.1| hypothetical protein SASG_01463 [Staphylococcus aureus subsp. aureus C427] gi|283767782|ref|ZP_06340697.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|282315697|gb|EFB46081.1| hypothetical protein SASG_01463 [Staphylococcus aureus subsp. aureus C427] gi|282318345|gb|EFB48705.1| hypothetical protein SATG_00962 [Staphylococcus aureus subsp. aureus D139] gi|282597082|gb|EFC02041.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|283461661|gb|EFC08745.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] Length = 189 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A +++ +EN I L + + ++ D + Sbjct: 2 NLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D+ ++ L+ +A + Sbjct: 62 VKG--TIPFVPDIKVQRSLNLWAYVMLI 87 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + L + ++SN+E +++P+I + ++ LD Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + G VP + N Sbjct: 61 LVKGTIPFVPDIKVQRSLN 79 >gi|229194113|ref|ZP_04320982.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228589370|gb|EEK47320.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876] Length = 108 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 8/109 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G I+D+RK TQKE+A ES + ++E + + + +++S D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFKVSTD 60 Query: 89 WIY------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 ++ +G+ D + N +L P LK R K + Q E Sbjct: 61 FLLGRDFDAEGKRNDSELDQWLNDIKLAPSQKREELK--RFWKFIMQEE 107 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +RK KG++Q E + L + ST+ YE+ P+ +I K D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFKVSTD 60 Query: 171 WIYFGD 176 ++ D Sbjct: 61 FLLGRD 66 >gi|257437945|ref|ZP_05613700.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199605|gb|EEU97889.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 231 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK +RK TQK+ A ++ ++ +E G+ + + + + + Y +S D++ Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K +RK++G++Q + + LG+ + LS+YE+G + ++ D+ Sbjct: 1 MEFNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|149188518|ref|ZP_01866811.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1] gi|148837736|gb|EDL54680.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1] Length = 185 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +RK +Q+E+A A SA++ EN S S+ + N + +S Sbjct: 5 QIGKNIAQLRKERGLSQRELAEKAGITHSAISSIENAKVSPSVSSLQKIVNVFSLSLSEF 64 Query: 91 YDGEVIDRRYEDV 103 + E + + V Sbjct: 65 FTLEQQENKEIKV 77 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D + IG + +RK++G+SQ E + G+ +S +S+ E + P + +KI V Sbjct: 1 MDNHQIGKNIAQLRKERGLSQRELAEKAGITHSAISSIENAKVSPSVSSLQKIVNVFSLS 60 Query: 169 LDWIYFGDEVIVPK 182 L + ++ + Sbjct: 61 LSEFFTLEQQENKE 74 >gi|325677861|ref|ZP_08157503.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110415|gb|EGC04589.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 180 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 28/85 (32%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G I++ RK TQ+ +A AV+ +E+G L +S D + Sbjct: 2 DIGENIRNARKKKGMTQEMLAEKMGVSRQAVSKWESGKGMPETEKLAELSALLGVSADRL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 + + E Sbjct: 62 IGIRPQEEQSEKGCAVDSRIHICSH 86 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ RK KGM+Q + +G+ +S +E G+ +PE + ++ + D Sbjct: 1 MDIGENIRNARKKKGMTQEMLAEKMGVSRQAVSKWESGKGMPETEKLAELSALLGVSADR 60 Query: 172 IYFGDEVIVPKSIKRAKG 189 + I P+ + KG Sbjct: 61 LIG----IRPQEEQSEKG 74 >gi|164687366|ref|ZP_02211394.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM 16795] gi|164603790|gb|EDQ97255.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM 16795] Length = 125 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 31/81 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +R + N +Q +++ S + ++E G + + +++S D++ Sbjct: 2 FGQNLKKLRTSKNLSQSKLSKILGISSSTIGMYEQGRRFPDQTILTKIADFFDVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPY 112 + E ++ Sbjct: 62 GRNPQNPPTEFNNATDAMEFI 82 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 34/75 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G LK +R K +SQ + K+LG+ +ST+ YEQGR P+ KI D++ Sbjct: 1 MFGQNLKKLRTSKNLSQSKLSKILGISSSTIGMYEQGRRFPDQTILTKIADFFDVSTDYL 60 Query: 173 YFGDEVIVPKSIKRA 187 + P A Sbjct: 61 LGRNPQNPPTEFNNA 75 >gi|30022437|ref|NP_834068.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|29897995|gb|AAP11269.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] Length = 181 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 38/100 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKIVKKEERKYSVYGKDEQRIEHVAEQGGLRLS 101 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKIVKKEER 77 >gi|167749015|ref|ZP_02421142.1| hypothetical protein ANACAC_03796 [Anaerostipes caccae DSM 14662] gi|317472587|ref|ZP_07931905.1| hypothetical protein HMPREF1011_02255 [Anaerostipes sp. 3_2_56FAA] gi|167651637|gb|EDR95766.1| hypothetical protein ANACAC_03796 [Anaerostipes caccae DSM 14662] gi|316899921|gb|EFV21917.1| hypothetical protein HMPREF1011_02255 [Anaerostipes sp. 3_2_56FAA] Length = 114 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G +IK++R+ N TQ+ +A + S ++ E S+ + + N +S D Sbjct: 5 YEALGRKIKEVRRKQNMTQEYLAEKVDLSVSHISNIETAKTKVSLPTLVEISNALGVSVD 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLD 110 ++ ++ K LD Sbjct: 65 YLLMDSYHSPEMKEDVFVKELD 86 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 33/69 (47%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +++ A+G ++K +R+ + M+Q + + + S +SN E +T + +I Sbjct: 1 MKMNYEALGRKIKEVRRKQNMTQEYLAEKVDLSVSHISNIETAKTKVSLPTLVEISNALG 60 Query: 167 KHLDWIYFG 175 +D++ Sbjct: 61 VSVDYLLMD 69 >gi|145595917|ref|YP_001160214.1| cupin 2 domain-containing protein [Salinispora tropica CNB-440] gi|145305254|gb|ABP55836.1| Cupin 2, conserved barrel domain protein [Salinispora tropica CNB-440] Length = 215 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 34/93 (36%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 L + ++ Q VG R++ +R T +++ S ++ E+G ++ L Sbjct: 18 LTMDGDLNQALDAVGPRLRALRHKRATTLTDLSAQTGISVSTLSRLESGTRRPTLELLLP 77 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDP 111 L + ++ D + + R D Sbjct: 78 LARAHGVTLDELVGAPPTGDPRIHLRPVIRHDM 110 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R + + + G+ STLS E G P ++ + + LD + Sbjct: 30 AVGPRLRALRHKRATTLTDLSAQTGISVSTLSRLESGTRRPTLELLLPLARAHGVTLDEL 89 Query: 173 Y 173 Sbjct: 90 V 90 >gi|239943369|ref|ZP_04695306.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239989822|ref|ZP_04710486.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291446837|ref|ZP_06586227.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349784|gb|EFE76688.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 213 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++++R+ + T E+A ES ++ E G ++ L L + + D + Sbjct: 24 VGPRLRELRRRHGMTLAELAERTGINESTLSRLEGGTRKPTLELLLPLAEVHAVPLDELV 83 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 4/100 (4%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 D K A+G RL+ +R+ GM+ E + G+ STLS E G Sbjct: 1 MAATEEDTAGPAPKGGKDGVLAAVGPRLRELRRRHGMTLAELAERTGINESTLSRLEGGT 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIY----FGDEVIVPKSIKR 186 P ++ + +V LD + GD I + + R Sbjct: 61 RKPTLELLLPLAEVHAVPLDELVGAPRTGDPRIHLRPVTR 100 >gi|239631261|ref|ZP_04674292.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525726|gb|EEQ64727.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 222 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G ++ +RK TQ+++A ++ +E + L L ++ S D + Sbjct: 22 KFGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLDQL 81 Query: 91 YDG----EVIDRRYEDVTNKKRLDPYAIGARL 118 E ++ + + +A + Sbjct: 82 LKSDSQLEEKLKKQTVQRWLEPMYWFAGINSV 113 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L ++RK + M+Q + L + T+S++E+ ++ P++ ++ +V LD Sbjct: 21 MKFGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLDQ 80 Query: 172 IYFGDEVIVPKSIKRA 187 + D + K K+ Sbjct: 81 LLKSDSQLEEKLKKQT 96 >gi|301066017|ref|YP_003788040.1| hypothetical protein LCAZH_0946 [Lactobacillus casei str. Zhang] gi|300438424|gb|ADK18190.1| hypothetical membrane protein [Lactobacillus casei str. Zhang] Length = 202 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G ++ +RK TQ+++A ++ +E + L L ++ S D + Sbjct: 2 KFGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLDQL 61 Query: 91 YDG----EVIDRRYEDVTNKKRLDPYAIGARL 118 E ++ + + +A + Sbjct: 62 LKSDSQLEEKLKKQTVQRWLEPMYWFAGINSV 93 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L ++RK + M+Q + L + T+S++E+ ++ P++ ++ +V LD Sbjct: 1 MKFGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLDQ 60 Query: 172 IYFGDEVIVPKSIKRA 187 + D + K K+ Sbjct: 61 LLKSDSQLEEKLKKQT 76 >gi|160878668|ref|YP_001557636.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427334|gb|ABX40897.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 114 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 9/105 (8%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY--- 91 R+K +R+ + TQ E+A +AV+ +E+ S + L +++S D++ Sbjct: 6 RLKQLRQKHKLTQSELAEILGLKPTAVSNYESRRNEPSFEKLIALSRYFDVSCDYLLGIS 65 Query: 92 ------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 GEV+D+ D N + A LK+ Q Sbjct: 66 DAYLPVGGEVLDKDIVDFFNLYQQLDSNNAAELKNFANYLLYKQE 110 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R+ ++Q E ++LG+ + +SNYE R P + + + D+ Sbjct: 1 MNFNIRLKQLRQKHKLTQSELAEILGLKPTAVSNYESRRNEPSFEKLIALSRYFDVSCDY 60 Query: 172 IYFGDEVIVP 181 + + +P Sbjct: 61 LLGISDAYLP 70 >gi|54026486|ref|YP_120728.1| hypothetical protein nfa45130 [Nocardia farcinica IFM 10152] gi|54017994|dbj|BAD59364.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 201 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + Q + VG R++ +RK T E++ S ++ E+G ++ L L + Sbjct: 1 MDQALEAVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHG 60 Query: 85 ISFDWIYDGEVIDRRY 100 ++ D + D Sbjct: 61 VTLDELVDAPPTGDPR 76 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++RK + + E G+ STLS E G P ++ + + LD + Sbjct: 7 AVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHGVTLDEL 66 Query: 173 Y----FGDEVIVPKSIKR 186 GD + + + R Sbjct: 67 VDAPPTGDPRVHLRPVTR 84 >gi|325289460|ref|YP_004265641.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964861|gb|ADY55640.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 343 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 27/65 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG I+ RK N TQ+EMA AVN +ENG I + IS D + Sbjct: 3 VGNVIRKYRKDKNLTQEEMAKRLGVTAPAVNKWENGYSLPDISLLSPIARLLNISIDTLL 62 Query: 92 DGEVI 96 E Sbjct: 63 SHEKE 67 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ RKDK ++Q E K LG+ ++ +E G ++P+I I ++ +D Sbjct: 1 MRVGNVIRKYRKDKNLTQEEMAKRLGVTAPAVNKWENGYSLPDISLLSPIARLLNISIDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + K + A+ N+ +++ K K+ Sbjct: 61 LLSHE-----KELSDAEANRLVEEANKKLKTE 87 >gi|238063802|ref|ZP_04608511.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237885613|gb|EEP74441.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 214 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T ++ + DVG R++ +R+ T E++ S ++ E+G ++ L L Sbjct: 22 MTDDLDRALADVGPRLRALRRQRETTLAELSAATGISVSTLSRLESGTRRPTLEQLLPLA 81 Query: 81 NEYEISFDWIY 91 + ++ D + Sbjct: 82 RAHGVTLDDLV 92 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY---- 173 L+++R+ + + E G+ STLS E G P ++ + + LD + Sbjct: 37 LRALRRQRETTLAELSAATGISVSTLSRLESGTRRPTLEQLLPLARAHGVTLDDLVGAPP 96 Query: 174 FGDEVIVPKSIKR 186 GD I + + R Sbjct: 97 TGDPRIHLRPVTR 109 >gi|206973030|ref|ZP_03233952.1| transcriptional regulator Xre [Bacillus cereus AH1134] gi|206731914|gb|EDZ49114.1| transcriptional regulator Xre [Bacillus cereus AH1134] Length = 108 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 14/112 (12%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G I+D+RK TQKE+A ES + ++E + + + + +S D Sbjct: 1 MKTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI---------RKDKGMSQIE 131 ++ D + NK LD + +K R K + Q E Sbjct: 61 FLL---GRDFNVTEDGNKIELDQW--LKDIKFAPSQKREELKRFWKFLMQEE 107 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +RK +G++Q E L + ST+ YE+ P+ +I D Sbjct: 1 MKTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTD 60 Query: 171 WIYF--------GDEVIVPKSIKRAKGNQSSKKSK 197 ++ G+++ + + +K K S K+ + Sbjct: 61 FLLGRDFNVTEDGNKIELDQWLKDIKFAPSQKREE 95 >gi|143833|gb|AAA22893.1| PBSX repressor [Bacillus subtilis] Length = 113 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R+K +R TQ+E+ + + +ENG L + ++++ D++ Sbjct: 2 IGSRLKSLRGKR--TQEEIVSHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLL 59 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 G+ + ++ Y Sbjct: 60 TGKDKKSDDDMFSDPDLQVAYRDMQ 84 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG+RLKS+R + +Q E +G+ + S+YE GR+ P+ +K+ + D++ Sbjct: 1 MIGSRLKSLRGKR--TQEEIVSHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYL 58 Query: 173 YFGDE 177 G + Sbjct: 59 LTGKD 63 >gi|323142578|ref|ZP_08077394.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413011|gb|EFY03914.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 101 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK +RK + TQ+++A + + E G SI A+ L +E + D+I+ Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIFL 98 Query: 93 GEV 95 G Sbjct: 99 GRE 101 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 40/87 (45%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + K D G R+K++RK+ G++Q + + LG+ +T++ E G Sbjct: 15 VFDYATSQIQKHGGTKMYYDLVESGKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGN 74 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDE 177 I A ++ + LD+I+ G E Sbjct: 75 RGISIDLAIELVVRFETTLDYIFLGRE 101 >gi|291558136|emb|CBL35253.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 106 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R+K +R + TQ+++A ++A++ +E + S + + + ++ D++ Sbjct: 3 KFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDYL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 E R D++ D + + ++ K K + + Sbjct: 63 LGLEDKRSRTLDISGLCEEDIRFLQSA-AALLKKKNAVKKSVAE 105 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G R+K +R GM+Q + + + + + +SNYE P + KI V D Sbjct: 1 MVKFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTD 60 Query: 171 WIYFGDE 177 ++ ++ Sbjct: 61 YLLGLED 67 >gi|293400467|ref|ZP_06644612.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305493|gb|EFE46737.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 162 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +KD G RIK+IR++ TQ + A N ++ ++ +E G S+ + + E +IS Sbjct: 5 KIYKDFGNRIKEIRQSLGLTQVKFAKIINCTQATLSSYEKGSIIPSLETMIKISKECQIS 64 Query: 87 FDWI 90 DW+ Sbjct: 65 LDWL 68 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G R+K IR+ G++Q++F K++ +TLS+YE+G IP ++ KI + + LD Sbjct: 7 YKDFGNRIKEIRQSLGLTQVKFAKIINCTQATLSSYEKGSIIPSLETMIKISKECQISLD 66 Query: 171 WI 172 W+ Sbjct: 67 WL 68 >gi|288906392|ref|YP_003431614.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306832439|ref|ZP_07465592.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979406|ref|YP_004289122.1| HTH-type transcriptional regulator rdgA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733118|emb|CBI14699.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304425479|gb|EFM28598.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179334|emb|CBZ49378.1| HTH-type transcriptional regulator rdgA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 166 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 34/72 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++K +RKAN+ +Q++++ + A++ +E G + L +++ +++ Sbjct: 2 EFGEKLKQLRKANHLSQEKLSERIHVSRQAISKWEQGSAIPDTDNIVLLSKFFQVPIEYL 61 Query: 91 YDGEVIDRRYED 102 + R Sbjct: 62 LLDDEEMREAYQ 73 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 38/86 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +RK +SQ + + + + +S +EQG IP+ + + + +++ Sbjct: 1 MEFGEKLKQLRKANHLSQEKLSERIHVSRQAISKWEQGSAIPDTDNIVLLSKFFQVPIEY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + DE + ++ + S K Sbjct: 61 LLLDDEEMREAYQYKSLVTEESVLPK 86 >gi|229019581|ref|ZP_04176397.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] gi|229025821|ref|ZP_04182220.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228735529|gb|EEL86125.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228741747|gb|EEL91931.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] Length = 181 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 38/99 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLDTISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKIVKKDERKYSVYGKDEQRIEHVAEQGGLRL 100 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLDTISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKIVKKDER 77 >gi|168213146|ref|ZP_02638771.1| immunity repressor protein [Clostridium perfringens CPE str. F4969] gi|170715320|gb|EDT27502.1| immunity repressor protein [Clostridium perfringens CPE str. F4969] Length = 117 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K +R T E+ ++ ++ +ENG+ I +A N + +S D+I Sbjct: 3 NFSKRLKQLRNEKGLTLDELKDALGTTKATLSRYENGLREPKIDFANKAANYFNVSLDYI 62 Query: 91 YDGEVIDRRYEDVTNKK 107 + E TN+ Sbjct: 63 LGVSDVREVNELSTNES 79 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +R +KG++ E LG +TLS YE G P+I A K LD+I Sbjct: 4 FSKRLKQLRNEKGLTLDELKDALGTTKATLSRYENGLREPKIDFANKAANYFNVSLDYIL 63 >gi|325840355|ref|ZP_08167002.1| transcriptional regulator, AbrB family [Turicibacter sp. HGF1] gi|325490340|gb|EGC92667.1| transcriptional regulator, AbrB family [Turicibacter sp. HGF1] Length = 143 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +RK + TQ+ +A N ++ +E+G + + + L Y +S D + Sbjct: 2 ISMNLRRLRKIHQYTQENVAEKLNVSRQSIAKWESGETTPDLEHLLKFSKLYNVSLDNLV 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 K Sbjct: 62 HHSEDHSGVSIPPKGKHF 79 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I L+ +RK +Q + L + +++ +E G T P+++ K ++ LD + Sbjct: 1 MISMNLRRLRKIHQYTQENVAEKLNVSRQSIAKWESGETTPDLEHLLKFSKLYNVSLDNL 60 Query: 173 YFGDEVIVPKSI 184 E SI Sbjct: 61 VHHSEDHSGVSI 72 >gi|325956992|ref|YP_004292404.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|325333557|gb|ADZ07465.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 122 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 6/113 (5%) Query: 25 IRQYWKDV-GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++++ + + IK++RK Q E+A N + V +E G L + + Sbjct: 1 MKEFNRKILANNIKELRKQKRLNQVELAKQLNVSQQTVGAWETGRAIPGSDTLDILADFF 60 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 ++S D++ E ++ + L K Q + + Sbjct: 61 DVSTDYLLGRETNSKKDNTALTWEDLKTPMPYGG-----KMPEELQDMYADIA 108 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K + + +K +RK K ++Q+E K L + T+ +E GR IP + Sbjct: 1 MKEFNRKILANNIKELRKQKRLNQVELAKQLNVSQQTVGAWETGRAIPGSDTLDILADFF 60 Query: 166 KKHLDWIYFGD 176 D++ + Sbjct: 61 DVSTDYLLGRE 71 >gi|300765733|ref|ZP_07075710.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] gi|300513606|gb|EFK40676.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] Length = 158 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 4/96 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK +Q ++A V +E G + L + + +S D++ Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 94 EVIDRRYE----DVTNKKRLDPYAIGARLKSIRKDK 125 + + +N D I A ++ RK+ Sbjct: 64 DDNNLAETIAAHIDSNASEEDIKEILAYIEEKRKEH 99 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 41/87 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL +RK KG SQ + LG ++NYEQG P+ + KI + D++ Sbjct: 1 MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 D+ + ++I + +S++ K+ Sbjct: 61 LGRDDNNLAETIAAHIDSNASEEDIKE 87 >gi|196048466|ref|ZP_03115641.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus 03BB108] gi|196020723|gb|EDX59455.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus 03BB108] Length = 114 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +RK+ + TQ E+A N +S + +E G I + + + +S D + Sbjct: 4 FGQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLDVLV 63 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK +RK + ++Q E + L + S + N+E GR P+I+ I LD Sbjct: 1 MIIFGQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + + + I++ Sbjct: 61 VLVGFSNNFMDEPIQQ 76 >gi|152976782|ref|YP_001376299.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025534|gb|ABS23304.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 181 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 38/100 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + +K R++ + + G+ Sbjct: 62 LLEQKNRMKIVKKEERKYSVYGKDKQRIEHVAEQGGLRLS 101 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + + K + K K+ Sbjct: 61 LLLEQKNRMKIVKKEERKYSVYGKDKQ 87 >gi|302342128|ref|YP_003806657.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638741|gb|ADK84063.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 432 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK++R +Q ++A S ++ E+ S+ + + + Sbjct: 252 DLGKRIKELRGKKGLSQTDLAKMVGVTPSTISQVESNHIYPSLPALIKMAEVLSVEIASF 311 Query: 91 YDGEVIDRRYEDVTNKKRL 109 ++ DR+ + ++ + Sbjct: 312 FNDGAEDRQRVVFSAEEAV 330 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 34/73 (46%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 ++ + +G R+K +R KG+SQ + K++G+ ST+S E P + K+ Sbjct: 242 DPQRRAASRFDLGKRIKELRGKKGLSQTDLAKMVGVTPSTISQVESNHIYPSLPALIKMA 301 Query: 163 QVTKKHLDWIYFG 175 +V + + Sbjct: 302 EVLSVEIASFFND 314 >gi|239626413|ref|ZP_04669444.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516559|gb|EEQ56425.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 232 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 31/81 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+++RK +Q+++A + AV+ +E G I + ++ + Sbjct: 4 IGKNIRNLRKQKKMSQEQLAGLLHVTRQAVSNWETGRTQPDIETLEAIAGAFDTDILMVL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPY 112 G + + +R Sbjct: 64 YGRRQEEADAETRQARRKQCI 84 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IG ++++RK K MSQ + LL + +SN+E GRT P+I+ I + Sbjct: 1 MSSIGKNIRNLRKQKKMSQEQLAGLLHVTRQAVSNWETGRTQPDIETLEAIAGAFDTDIL 60 Query: 171 WIYFG---DEVIVPKSIKRAK 188 + +G +E R K Sbjct: 61 MVLYGRRQEEADAETRQARRK 81 >gi|81429329|ref|YP_396330.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610972|emb|CAI56024.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 106 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K +RKA TQ E++ + V+ +E G+ S+ + + + + S D++ Sbjct: 6 FGERLKAVRKAKRLTQLELSQRLGVSKGTVSAYEQGLSYPSLETLVSICSILDTSADYLL 65 Query: 92 D 92 + Sbjct: 66 N 66 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G RLK++RK K ++Q+E + LG+ T+S YEQG + P ++ I + Sbjct: 1 MTINFFGERLKAVRKAKRLTQLELSQRLGVSKGTVSAYEQGLSYPSLETLVSICSILDTS 60 Query: 169 LDWIY 173 D++ Sbjct: 61 ADYLL 65 >gi|288572784|ref|ZP_06391141.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568525|gb|EFC90082.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 211 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 10/155 (6%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +K +RK TQ+++A ++ + +E S + + L +S +I Sbjct: 4 GNDLKRLRKEKGWTQQDLASRVGVTKTTILDWEKDRYSPVGQNLISLAKALNVSAAFIM- 62 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 GE D + K A L+ +R G+S E L+ +P L EQ Sbjct: 63 GETNDPSPQGTGKK------APEGVLRYLRDQTGLSLDEAAALIDLPAEDLELMEQYEDR 116 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 + +K+ + + ++ D ++ K+ Sbjct: 117 ADDTLKQKLIKAYGR---YLSARDGETQQETEKKK 148 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G LK +RK+KG +Q + +G+ +T+ ++E+ R P + + + + Sbjct: 1 MIRGNDLKRLRKEKGWTQQDLASRVGVTKTTILDWEKDRYSPVGQNLISLAKALNVSAAF 60 Query: 172 IYFGDEVIVPK 182 I P+ Sbjct: 61 IMGETNDPSPQ 71 >gi|229160813|ref|ZP_04288804.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803] gi|228622661|gb|EEK79496.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803] Length = 145 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 LGQQLKRLRESQGFSQEDVAKKVGITRQAVYKWENDKSCPDIENLILLSEMYNVTLDELI 62 Query: 92 DGEVI 96 G Sbjct: 63 KGNQN 67 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 38/71 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +LK +R+ +G SQ + K +G+ + +E ++ P+I+ + ++ LD Sbjct: 1 MSLGQQLKRLRESQGFSQEDVAKKVGITRQAVYKWENDKSCPDIENLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPK 182 + G++ + K Sbjct: 61 LIKGNQNLKEK 71 >gi|227529967|ref|ZP_03960016.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227350152|gb|EEJ40443.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 214 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 33/82 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + ++K R+ NN TQ+++A N ++ +EN I + + + Y +S Sbjct: 4 KLEMNFAQKMKSYRQKNNWTQQDIAERLNVSRKTISSWENSRSYPDIFMLVQISDLYRVS 63 Query: 87 FDWIYDGEVIDRRYEDVTNKKR 108 D + + ++ Sbjct: 64 LDDLLREDHKMIDSYKQEHEIN 85 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 40/85 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++KS R+ +Q + + L + T+S++E R+ P+I +I + + LD Sbjct: 7 MNFAQKMKSYRQKNNWTQQDIAERLNVSRKTISSWENSRSYPDIFMLVQISDLYRVSLDD 66 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + D ++ + + N+ +++ Sbjct: 67 LLREDHKMIDSYKQEHEINKKERRT 91 >gi|218133061|ref|ZP_03461865.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC 43243] gi|217991934|gb|EEC57938.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC 43243] Length = 225 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G I + R TQKE+A + ++ +E G I Y L + IS + Sbjct: 3 QEKIGRFIAETRNQAGMTQKELAGKIGISDKTISKWECGKSMPDITYLETLCDSLAISMN 62 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + GE + ++ + Sbjct: 63 ELISGERLSDTAYSPKAEENI 83 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + R GM+Q E +G+ + T+S +E G+++P+I + Sbjct: 1 MDQEKIGRFIAETRNQAGMTQKELAGKIGISDKTISKWECGKSMPDITYLETLCDSLAIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN--QSSKKSKKDKK 201 ++ + G+ + +A+ N K+++K KK Sbjct: 61 MNELISGERLSDTAYSPKAEENIMSLMKENQKAKK 95 >gi|253577297|ref|ZP_04854615.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843301|gb|EES71331.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 117 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G R++ R + TQ+++A ++ + E G S S+ + L N+ ++ D Sbjct: 3 YEALGKRLRQERHKMHLTQEKLAERIEVSDAYIGQIERGERSLSLETLVKLANQLGVTVD 62 Query: 89 WIYDG--EVIDRRYEDVTNKKRLDPYAIGARL 118 ++ E+ D + D + ++ +L Sbjct: 63 YLLHDSIEISDDHFLDQIQQIVMNRSTKEKQL 94 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 37/93 (39%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A+G RL+ R ++Q + + + + ++ + E+G ++ K+ Sbjct: 1 MDYEALGKRLRQERHKMHLTQEKLAERIEVSDAYIGQIERGERSLSLETLVKLANQLGVT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +D++ I +S K+K+ Sbjct: 61 VDYLLHDSIEISDDHFLDQIQQIVMNRSTKEKQ 93 >gi|228474153|ref|ZP_04058890.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|228271848|gb|EEK13185.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] Length = 191 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ R+ + +Q+ +A ++ +EN I L + ++IS D + Sbjct: 2 NIGQQIRKYRERDEYSQEYLAEKLYVSRQTISNWENEKSYPDIHNLLVMCELFDISLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G++ + E + ++++ +++ + Sbjct: 62 VRGDLNSNKQESIK--RKMNVWSLVMII 87 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ R+ SQ + L + T+SN+E ++ P+I + ++ LD Sbjct: 1 MNIGQQIRKYRERDEYSQEYLAEKLYVSRQTISNWENEKSYPDIHNLLVMCELFDISLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + GD + + K N Sbjct: 61 LVRGDLNSNKQESIKRKMN 79 >gi|226325896|ref|ZP_03801414.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758] gi|225206020|gb|EEG88374.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758] gi|291546627|emb|CBL19735.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 129 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 36/78 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI++ RK + +E+A A+ ++ EN S+ + + N EI+ D + Sbjct: 8 IGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALEITIDELL 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 G ++ E T+ L Sbjct: 68 YGNLLYNPTEYQTDIDLL 85 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ IG R++ RK +G+S E ++ + +S E + P ++ KI + Sbjct: 1 MEINYALIGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALE 60 Query: 167 KHLDWIYFGDEVIVPKSIK 185 +D + +G+ + P + Sbjct: 61 ITIDELLYGNLLYNPTEYQ 79 >gi|116334878|ref|YP_796404.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100225|gb|ABJ65373.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 201 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R+K R N TQ+++A ++ +EN I + L + Y +S D + Sbjct: 2 KFGDRLKKGRTELNLTQEQVARDFFITRQTISSWENEKTYPDIISLIKLSDYYHVSLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + R + + + R + Sbjct: 62 LKEDTGMREFLEKKDVTRKIKPIYRNLI 89 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK R + ++Q + + + T+S++E +T P+I K+ LD Sbjct: 1 MKFGDRLKKGRTELNLTQEQVARDFFITRQTISSWENEKTYPDIISLIKLSDYYHVSLDT 60 Query: 172 IYFGD----EVIVPKSIKRA 187 + D E + K + R Sbjct: 61 LLKEDTGMREFLEKKDVTRK 80 >gi|82752284|ref|YP_418025.1| hypothetical protein SAB2582c [Staphylococcus aureus RF122] gi|82657815|emb|CAI82270.1| probable membrane protein [Staphylococcus aureus RF122] Length = 189 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A +++ +EN I L + + ++ D + Sbjct: 2 NLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D+ ++ L+ +A + Sbjct: 62 VKG--TIPFVPDIKVQRSLNLWAYVMLI 87 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + L + ++SN+E +++P+I + ++ LD Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + G VP + N Sbjct: 61 LVKGTIPFVPDIKVQRSLN 79 >gi|290968677|ref|ZP_06560215.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] gi|290781330|gb|EFD93920.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] Length = 226 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNE 82 + +++ K VG RIK RK NN T K++A+ ES V +E G + + SI + Sbjct: 2 DKKEFNKMVGKRIKKQRKQNNMTLKDIAVKLGVTESTVQRYETGNISNVSIEMLQKIGKI 61 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKR 108 +S ++ + ++ D+ K Sbjct: 62 LLVSPAFLLGWDSAEKVVSDLEAHKH 87 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQV 164 K+ +G R+K RK M+ + LG+ ST+ YE G + I+ +KI ++ Sbjct: 2 DKKEFNKMVGKRIKKQRKQNNMTLKDIAVKLGVTESTVQRYETGNISNVSIEMLQKIGKI 61 Query: 165 TKKHLDWIYFGD 176 ++ D Sbjct: 62 LLVSPAFLLGWD 73 >gi|228911728|ref|ZP_04075501.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL 200] gi|228847886|gb|EEM92767.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL 200] Length = 374 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 1/104 (0%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 QIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR-KDKGMSQIEFG 133 ++ + RL + + +G+ + + Sbjct: 65 ISYTPQMKQEDIKNLYHRLAEAFSEKTFAEVMIECRGIIKKYYS 108 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIQIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYTPQMKQEDIKN 78 >gi|255025462|ref|ZP_05297448.1| transcriptional repressor, putative [Listeria monocytogenes FSL J2-003] Length = 68 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I+ IR+ N+ TQ++MA N ++ + +E G + + + + +++S D++ Sbjct: 2 IHKNIRSIREDNDMTQQQMADLLNVSQNTYSQYETGKIEWTASTLIKIADYFDVSIDYLL 61 Query: 92 DG 93 D Sbjct: 62 DR 63 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I ++SIR+D M+Q + LL + +T S YE G+ KI +D++ Sbjct: 1 MIHKNIRSIREDNDMTQQQMADLLNVSQNTYSQYETGKIEWTASTLIKIADYFDVSIDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|229074788|ref|ZP_04207803.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18] gi|229096338|ref|ZP_04227311.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29] gi|229115293|ref|ZP_04244702.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3] gi|228668125|gb|EEL23558.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3] gi|228687298|gb|EEL41203.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29] gi|228708300|gb|EEL60458.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18] Length = 149 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 IGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELI 62 Query: 92 DGEV 95 G Sbjct: 63 KGNQ 66 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 40/86 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +LK +R+ K SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSIGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + G++ K + K+++ Sbjct: 61 LIKGNQSFKEKIHIDEEEADFEKENE 86 >gi|239626675|ref|ZP_04669706.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516821|gb|EEQ56687.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 194 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +RK N TQ ++A N + AV+ +E G+ + L + + + + Sbjct: 5 KIGKLIYQLRKENRMTQLQLANQMNISDKAVSKWERGLGCPELSLLPELSKIFNVDLEKL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 GE+ D N K++ Y Sbjct: 65 LSGEL-DANEILGGNMKKMHFYMCPNC 90 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + +RK+ M+Q++ + + + +S +E+G PE+ ++ ++ Sbjct: 1 MDNVKIGKLIYQLRKENRMTQLQLANQMNISDKAVSKWERGLGCPELSLLPELSKIFNVD 60 Query: 169 LDWIYFGD 176 L+ + G+ Sbjct: 61 LEKLLSGE 68 >gi|153954532|ref|YP_001395297.1| hypothetical protein CKL_1914 [Clostridium kluyveri DSM 555] gi|153954634|ref|YP_001395399.1| hypothetical protein CKL_2016 [Clostridium kluyveri DSM 555] gi|219855106|ref|YP_002472228.1| hypothetical protein CKR_1763 [Clostridium kluyveri NBRC 12016] gi|146347390|gb|EDK33926.1| Hypothetical protein CKL_1914 [Clostridium kluyveri DSM 555] gi|146347492|gb|EDK34028.1| Hypothetical protein CKL_2016 [Clostridium kluyveri DSM 555] gi|219568830|dbj|BAH06814.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 213 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +IK++R+ N TQ + N +A++ +ENG + + L +++S D+I Sbjct: 93 FGNKIKELREEMNWTQDHLGKLLNVKRAAISKYENGKVPLTDEILIKLSKIFDVSCDYIL 152 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 + K ++ Sbjct: 153 GVSNKRNDSKVENKKSFMEKIED 175 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 58/152 (38%), Gaps = 6/152 (3%) Query: 44 NKTQKEMAIGANQLESAVNLFENGMCS--TSIRYALYLRNEY--EISFDWIYD--GEVID 97 +T++E + + ++ N S S L ++ ++++ + G + Sbjct: 17 KRTKEEYSKDSGVSRGYISKCINMKISNPPSPEILKRLASKAHNNVTYEDLMRAAGYIDT 76 Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 ++ + G ++K +R++ +Q GKLL + + +S YE G+ + Sbjct: 77 DNEDEYITTDNFNNNPFGNKIKELREEMNWTQDHLGKLLNVKRAAISKYENGKVPLTDEI 136 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKG 189 K+ ++ D+I ++ K Sbjct: 137 LIKLSKIFDVSCDYILGVSNKRNDSKVENKKS 168 >gi|86138335|ref|ZP_01056909.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85824860|gb|EAQ45061.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 207 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 39/96 (40%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 KSL E D+G R++++RKA + T + A A S ++ ENG S Sbjct: 7 KSLITIARANGEEREAEPLDLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSP 66 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 + L +IS ++ D+ +T K Sbjct: 67 TYEALKKLAVGLQISVPQLFTPPQRDQVNGRMTVTK 102 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + + ++ +P +GAR++ +RK + + G+ STLS E G+ P Sbjct: 7 KSLITIARANGEEREAEPLDLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSP 66 Query: 154 EIKPARKIKQVTKKHLDWIYF 174 + +K+ + + ++ Sbjct: 67 TYEALKKLAVGLQISVPQLFT 87 >gi|256397796|ref|YP_003119360.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364022|gb|ACU77519.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 223 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 EI + VG R+K +R+ ++ T ++A S ++ E G+ ++ L L + Sbjct: 34 EIDRTLDAVGPRLKRLRQRSDITLTDLAKKTGISASTLSRLEAGLRRPTLEQLLPLARAH 93 Query: 84 EISFDWIYDGEVIDRRY 100 ++ D + D Sbjct: 94 GVTLDELVDAPPTGDPR 110 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 99 RYEDVTNKKRLDPY--AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 ED+ N + +D A+G RLK +R+ ++ + K G+ STLS E G P ++ Sbjct: 25 DPEDLDNHEEIDRTLDAVGPRLKRLRQRSDITLTDLAKKTGISASTLSRLEAGLRRPTLE 84 Query: 157 PARKIKQVTKKHLDWIY 173 + + LD + Sbjct: 85 QLLPLARAHGVTLDELV 101 >gi|169333659|ref|ZP_02860852.1| hypothetical protein ANASTE_00043 [Anaerofustis stercorihominis DSM 17244] gi|169259653|gb|EDS73619.1| hypothetical protein ANASTE_00043 [Anaerofustis stercorihominis DSM 17244] Length = 129 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G R+K+IRK TQ+ +A A+ S + ENG S+ + + N +S D Sbjct: 6 KNIGNRLKEIRKRERYTQENVAEFADISTSHYSHIENGTTKPSLNTLIRIVNVLNVSMDE 65 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + D E+ + + +D +K Sbjct: 66 VLDIELNKKSLY--ITLEEIDKIFRNCNMKQ 94 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ IG RLK IRK + +Q + + S S+ E G T P + +I V Sbjct: 1 MDINLKNIGNRLKEIRKRERYTQENVAEFADISTSHYSHIENGTTKPSLNTLIRIVNVLN 60 Query: 167 KHLDWIY 173 +D + Sbjct: 61 VSMDEVL 67 >gi|148544031|ref|YP_001271401.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|148531065|gb|ABQ83064.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] Length = 111 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 36/85 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI D+R N+ +Q ++A S + ++E S + + + +++S D++ Sbjct: 3 IGNRIADLRTNNHMSQFQLAKVLGIGTSTLGMYETNKRKPSPKVLNKIADYFDVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + T + L Sbjct: 63 GRKSKADQVHNATVDEALGTIMSFE 87 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG R+ +R + MSQ + K+LG+ STL YE + P K KI D+ Sbjct: 1 MSIGNRIADLRTNNHMSQFQLAKVLGIGTSTLGMYETNKRKPSPKVLNKIADYFDVSTDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|313904771|ref|ZP_07838144.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470374|gb|EFR65703.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 204 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 53/95 (55%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G + + RK++GM+Q + LG+ + +S +E G+++P+ ++ + K + Sbjct: 1 MDQIKVGKFIAACRKEQGMTQANLAEKLGISDRAISKWETGKSMPDTGIMLELCEHLKIN 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ + G++++ KRA+ N + + ++K+ Sbjct: 61 VNELLSGEKIMAELYDKRAEENLLEMRRQVEEKNR 95 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I RK TQ +A + A++ +E G L L +I+ + + Sbjct: 5 KVGKFIAACRKEQGMTQANLAEKLGISDRAISKWETGKSMPDTGIMLELCEHLKINVNEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 GE I D ++ L Sbjct: 65 LSGEKIMAELYDKRAEENL 83 >gi|228950524|ref|ZP_04112674.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809160|gb|EEM55631.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 114 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +RK+ + TQ E+A N +S + +E G I + + + +S D + Sbjct: 4 FGQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLDVLV 63 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK +RK + ++Q E + L + S + N+E GR P+I+ I LD Sbjct: 1 MIIFGQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + + + I++ Sbjct: 61 VLVGFSNNFIDEPIQQ 76 >gi|284032671|ref|YP_003382602.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811964|gb|ADB33803.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 191 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 32/86 (37%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + VG R++ +R+ T ++A S ++ E G ++ L L + Sbjct: 3 DFDEVLEAVGPRLRRLRQERGTTLTQLAESTGISVSTLSRLEAGQRRPTLELLLPLARAH 62 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRL 109 ++ D + D KR Sbjct: 63 QVQLDELVDAPSTGDPRIHSKPIKRF 88 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+ +R+++G + + + G+ STLS E G+ P ++ + + + LD + Sbjct: 10 AVGPRLRRLRQERGTTLTQLAESTGISVSTLSRLEAGQRRPTLELLLPLARAHQVQLDEL 69 Query: 173 Y----FGDEVIVPKSIKR 186 GD I K IKR Sbjct: 70 VDAPSTGDPRIHSKPIKR 87 >gi|322382691|ref|ZP_08056546.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153337|gb|EFX45770.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 110 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + K +G RIK +R+ TQ E+A + + +E G L + + + Sbjct: 3 EKEKKQMGLRIKKLREEKGLTQDELAEMLGMKRTNIANYEAGRVIPPGNVLRDLADIFAV 62 Query: 86 SFDWIYDGEVIDRRYEDVTNK 106 S D++ E Y + Sbjct: 63 STDYLLGRETSGEVYTIAAHH 83 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 34/59 (57%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K +R++KG++Q E ++LGM + ++NYE GR IP R + + D++ + Sbjct: 13 IKKLREEKGLTQDELAEMLGMKRTNIANYEAGRVIPPGNVLRDLADIFAVSTDYLLGRE 71 >gi|167746263|ref|ZP_02418390.1| hypothetical protein ANACAC_00968 [Anaerostipes caccae DSM 14662] gi|167654256|gb|EDR98385.1| hypothetical protein ANACAC_00968 [Anaerostipes caccae DSM 14662] Length = 191 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 12/154 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK R + +Q E+A ++ +ENG ++ L L + IS D + Sbjct: 2 EFSKQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDTL 61 Query: 91 YDG------EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL-----GMP 139 G E I N+ L + + + G ++ G Sbjct: 62 VKGDLEEMREQIKAEDIKKWNRDSLIFSLLLVATAVLAVPLSLYGDVVGIVIWLVIFGCA 121 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVT-KKHLDWI 172 E+ + +I+ ++I T K LD I Sbjct: 122 IYYAGRVEKQKKTHDIQTYKEIMAFTEGKKLDEI 155 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K R D +SQ E + + + T+SN+E G+ P++K + + LD Sbjct: 1 MEFSKQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + GD + + IK + ++ S Sbjct: 61 LVKGDLEEMREQIKAEDIKKWNRDS 85 >gi|222530394|ref|YP_002574276.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457241|gb|ACM61503.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 105 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG RIK++R+ + ++A A +S ++ ENG + +I + + N +I+ Sbjct: 3 DVGKRIKELREKCGLSMSKLAKIAGVGQSTLSYIENGERNPTIDVIIKICNALDITLVEF 62 Query: 91 YDGEVID 97 + GE Sbjct: 63 FGGEEKP 69 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 41/90 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +G R+K +R+ G+S + K+ G+ STLS E G P I KI L Sbjct: 1 MFDVGKRIKELREKCGLSMSKLAKIAGVGQSTLSYIENGERNPTIDVIIKICNALDITLV 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + G+E +S K + +KK + + Sbjct: 61 EFFGGEEKPHMESPKLQELLVYAKKLSEKE 90 >gi|206969826|ref|ZP_03230780.1| DNA-binding protein [Bacillus cereus AH1134] gi|218233772|ref|YP_002369171.1| DNA-binding protein [Bacillus cereus B4264] gi|218899530|ref|YP_002447941.1| DNA-binding protein [Bacillus cereus G9842] gi|228923113|ref|ZP_04086404.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941529|ref|ZP_04104079.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960632|ref|ZP_04122278.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974459|ref|ZP_04135027.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981053|ref|ZP_04141355.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|229071869|ref|ZP_04205081.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|229081626|ref|ZP_04214121.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|229111834|ref|ZP_04241380.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|229146932|ref|ZP_04275296.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|229152564|ref|ZP_04280754.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|229180637|ref|ZP_04307977.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|296504853|ref|YP_003666553.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|206735514|gb|EDZ52682.1| DNA-binding protein [Bacillus cereus AH1134] gi|218161729|gb|ACK61721.1| DNA-binding protein [Bacillus cereus B4264] gi|218543442|gb|ACK95836.1| DNA-binding protein [Bacillus cereus G9842] gi|228602782|gb|EEK60263.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|228630930|gb|EEK87569.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|228636531|gb|EEK92997.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228671590|gb|EEL26888.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|228701630|gb|EEL54121.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228711241|gb|EEL63204.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228778713|gb|EEM26978.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228785295|gb|EEM33306.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799060|gb|EEM46031.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818179|gb|EEM64254.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836492|gb|EEM81842.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325905|gb|ADH08833.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|326942143|gb|AEA18039.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 181 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 38/100 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + N + ++ Sbjct: 2 NIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + +K R++ + + G+ Sbjct: 62 LLEQKDRLKIVKKEERKYSVYGKDEQRIEHVAEQGGLRLS 101 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I L + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDRLKIVKKEER 77 >gi|160894719|ref|ZP_02075494.1| hypothetical protein CLOL250_02270 [Clostridium sp. L2-50] gi|156863653|gb|EDO57084.1| hypothetical protein CLOL250_02270 [Clostridium sp. L2-50] Length = 416 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I RK+ TQ+++A A++ +ENG +I L ++S D I Sbjct: 6 KVGNFIMGKRKSLGMTQQQLADKLKVSFQAISKWENGTTYPNIEILRDLAIVLDVSVDEI 65 Query: 91 YDGEVID 97 G D Sbjct: 66 LAGSERD 72 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 LD +G + RK GM+Q + L + +S +E G T P I+ R + V Sbjct: 1 MLDSIKVGNFIMGKRKSLGMTQQQLADKLKVSFQAISKWENGTTYPNIEILRDLAIVLDV 60 Query: 168 HLDWIYFGDE 177 +D I G E Sbjct: 61 SVDEILAGSE 70 >gi|223933217|ref|ZP_03625208.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|330832261|ref|YP_004401086.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223898147|gb|EEF64517.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329306484|gb|AEB80900.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 126 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +VG RI+++R+ Q ++A +S ++ +E+G+ + + + L + S Sbjct: 8 YPEVGQRIRELREMRGFEQLDIANQLGYKSQSTISKWESGVNLPTGKKLILLAEMLDTST 67 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 D+I G++ D +D T A + Sbjct: 68 DYILHGKISDTSTKDTTPTIDFKEMAAESM 97 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +G R++ +R+ +G Q++ LG ST+S +E G +P K + ++ Sbjct: 5 KIKYPEVGQRIRELREMRGFEQLDIANQLGYKSQSTISKWESGVNLPTGKKLILLAEMLD 64 Query: 167 KHLDWIYFGD 176 D+I G Sbjct: 65 TSTDYILHGK 74 >gi|314935191|ref|ZP_07842544.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] gi|313656526|gb|EFS20265.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] Length = 191 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 36/79 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ R+ + +Q+ +A ++ +EN I L + ++IS D + Sbjct: 2 NIGQQIRKYRERDEYSQEYLAEKLYVSRQTISNWENEKSYPDIHNLLVMCELFDISLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 G++ + E + K + Sbjct: 62 VRGDLNSNKQESIKRKMNI 80 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ R+ SQ + L + T+SN+E ++ P+I + ++ LD Sbjct: 1 MNIGQQIRKYRERDEYSQEYLAEKLYVSRQTISNWENEKSYPDIHNLLVMCELFDISLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + GD + + K N Sbjct: 61 LVRGDLNSNKQESIKRKMN 79 >gi|171914342|ref|ZP_02929812.1| putative phage repressor [Verrucomicrobium spinosum DSM 4136] Length = 286 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 24/157 (15%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D R+K +R TQ++ A V E G + S + L + Sbjct: 2 DFSERLKALRTRLGLTQRDFAEKLKLSVGYVYQLEAGKRAPSESLLVLL---------DL 52 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + E + ++++ R+ KG + + K G L E+ Sbjct: 53 IEKEAAATP-------------SPRSKMRDAREAKGWTIRDLSKATGYAVGVLQAMEEAS 99 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 K I ++ + G + PK I Sbjct: 100 GRASEKMINAISTALGIPVEDLMQGSD--APKIIDET 134 Score = 41.9 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 9/83 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK++R G++Q +F + L + + E G+ P + Sbjct: 1 MDFSERLKALRTRLGLTQRDFAEKLKLSVGYVYQLEAGKRAPSESLLVLL---------D 51 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + + P + + + +K Sbjct: 52 LIEKEAAATPSPRSKMRDAREAK 74 Score = 41.9 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 8/76 (10%), Positives = 26/76 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++++D R+A T ++++ + E S + + I + + G Sbjct: 65 SKMRDAREAKGWTIRDLSKATGYAVGVLQAMEEASGRASEKMINAISTALGIPVEDLMQG 124 Query: 94 EVIDRRYEDVTNKKRL 109 + ++ + Sbjct: 125 SDAPKIIDETGRTGTM 140 >gi|148545002|ref|YP_001272372.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184154336|ref|YP_001842677.1| transcription regulator [Lactobacillus reuteri JCM 1112] gi|227364146|ref|ZP_03848243.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325683349|ref|ZP_08162865.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148532036|gb|ABQ84035.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] gi|183225680|dbj|BAG26197.1| transcription regulator [Lactobacillus reuteri JCM 1112] gi|227070785|gb|EEI09111.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324977699|gb|EGC14650.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 206 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 28/78 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ TQ+++A ++ +ENG I + + + Y +S D + Sbjct: 2 KFADKMKLYRRQKEWTQQDVAERLLISRKTISSWENGRSYPDIFMLVQISDLYHVSLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + Sbjct: 62 LREDHEMINNYKEEHTMN 79 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 37/84 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K R+ K +Q + + L + T+S++E GR+ P+I +I + LD Sbjct: 1 MKFADKMKLYRRQKEWTQQDVAERLLISRKTISSWENGRSYPDIFMLVQISDLYHVSLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D ++ + N+ K Sbjct: 61 LLREDHEMINNYKEEHTMNKRVDK 84 >gi|212634305|ref|YP_002310830.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212555789|gb|ACJ28243.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 328 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK +Q+++A N +V+ +E+ + + L +E+S D++ Sbjct: 3 LADKIIRLRKQCGWSQEDLAEKMNVSRQSVSKWESANSIPDLNRIITLAEIFEVSTDFLL 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 E + ++ L Sbjct: 63 KDETEVSETLESVSQTNL 80 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +RK G SQ + + + + ++S +E +IP++ + ++ + D++ + Sbjct: 7 IIRLRKQCGWSQEDLAEKMNVSRQSVSKWESANSIPDLNRIITLAEIFEVSTDFLLKDET 66 Query: 178 VIVPKSIKRAKGNQSSKKSK---KDKK 201 + ++ N S + DKK Sbjct: 67 EVSETLESVSQTNLISLEQALAYTDKK 93 >gi|126740655|ref|ZP_01756341.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126718170|gb|EBA14886.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 138 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 3/125 (2%) Query: 14 LQEYTLIITPEIRQYWKD---VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 + + II + D G R+ R+A TQ E++ +S + +E + Sbjct: 1 MSDEATIIEETTDWFGPDAATFGDRVAAAREAAGMTQAELSRRMGIKKSTLTGWEQDLSE 60 Query: 71 TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 L +S W+ GE + D A+ L+ +R + + Sbjct: 61 PRANKLSTLSGLLNVSMSWLLTGEGEGMSEPADQVIELSDFGAVLKELRELRSEMRNNAE 120 Query: 131 EFGKL 135 G+L Sbjct: 121 RAGRL 125 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G R+ + R+ GM+Q E + +G+ STL+ +EQ + P + + + Sbjct: 18 DAATFGDRVAAAREAAGMTQAELSRRMGIKKSTLTGWEQDLSEPRANKLSTLSGLLNVSM 77 Query: 170 DWIYFGDEVIVPKSIKR 186 W+ G+ + + + Sbjct: 78 SWLLTGEGEGMSEPADQ 94 >gi|215486344|ref|YP_002328775.1| transcriptional repressor DicA [Escherichia coli O127:H6 str. E2348/69] gi|254792795|ref|YP_003077632.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|260843554|ref|YP_003221332.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|261257017|ref|ZP_05949550.1| putative phage repressor protein CI [Escherichia coli O157:H7 str. FRIK966] gi|215264416|emb|CAS08774.1| predicted phage repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|254592195|gb|ACT71556.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|257758701|dbj|BAI30198.1| predicted phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|323977164|gb|EGB72251.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 135 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI++ RK +Q +++ A S+++L+E+ + + L + S W Sbjct: 4 KTLGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTW 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIG-ARLKSIRK-DKGMSQIEFGKL 135 I G+ V LD L+ R K Q + +L Sbjct: 64 ILFGDEDKTPDPPVALNSALDLSEDELEMLRLYRALPKSEQQAQISEL 111 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R++ RK G+SQ + K G+ S++S +E T P + ++ +V + Sbjct: 1 MNEKTLGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCS 60 Query: 169 LDWIYFGDEVIVP 181 WI FGDE P Sbjct: 61 PTWILFGDEDKTP 73 >gi|228918792|ref|ZP_04082190.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840864|gb|EEM86108.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 108 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 8/109 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G I+D+RK TQKE+A ES + ++E + L + + +S D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRLADYFNVSTD 60 Query: 89 WIYDGEVIDRRYEDVT------NKKRLDPYAIGARLKSIRKDKGMSQIE 131 ++ + + N + P LK R K + Q E Sbjct: 61 FLLGRDFNVKENRTNIELDQWLNDIKFAPSQKREELK--RFWKFLMQEE 107 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +RK KG++Q E L + ST+ YE+ P+ ++ D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRLADYFNVSTD 60 Query: 171 WIYFGD 176 ++ D Sbjct: 61 FLLGRD 66 >gi|228984217|ref|ZP_04144399.1| hypothetical protein bthur0001_9250 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775504|gb|EEM23888.1| hypothetical protein bthur0001_9250 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 124 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q +++ + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQSDLSEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQSDLSEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|257866591|ref|ZP_05646244.1| predicted protein [Enterococcus casseliflavus EC30] gi|257872893|ref|ZP_05652546.1| predicted protein [Enterococcus casseliflavus EC10] gi|257800549|gb|EEV29577.1| predicted protein [Enterococcus casseliflavus EC30] gi|257807057|gb|EEV35879.1| predicted protein [Enterococcus casseliflavus EC10] Length = 304 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 32/91 (35%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +I RK N TQ +A AV+ +E G I L ++S D Sbjct: 6 MRKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAILDLSID 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + ++ + + + +K Sbjct: 66 ELLGKPAAAVQHYQAGTAQPEEIAELAPLIK 96 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 34/68 (50%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + IG ++ + RK+K ++Q L + +SN+E+G ++P+I+ ++ + Sbjct: 1 MSEFNMRKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAIL 60 Query: 166 KKHLDWIY 173 +D + Sbjct: 61 DLSIDELL 68 >gi|229061582|ref|ZP_04198926.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] gi|228717816|gb|EEL69466.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] Length = 118 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI D+RK TQ+++ + ++ +E G+ S L + + + D+++ Sbjct: 4 IGERIFDLRKERKLTQEKIGENIGVSKQTISKYEKGIKIPSRENIEKLADFFNVPIDYLF 63 Query: 92 DGEVIDRRYEDVTNKKR 108 + + + Sbjct: 64 GKSDTSIKSSNNIKEIF 80 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 38/73 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+ +RK++ ++Q + G+ +G+ T+S YE+G IP + K+ +D Sbjct: 1 MNIIGERIFDLRKERKLTQEKIGENIGVSKQTISKYEKGIKIPSRENIEKLADFFNVPID 60 Query: 171 WIYFGDEVIVPKS 183 +++ + + S Sbjct: 61 YLFGKSDTSIKSS 73 >gi|229082949|ref|ZP_04215370.1| transcriptional regulator [Bacillus cereus Rock4-2] gi|228700349|gb|EEL52914.1| transcriptional regulator [Bacillus cereus Rock4-2] Length = 186 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ +RK +N +Q+++A + +++ +EN I L + + +S D + Sbjct: 2 NIGRQIQYLRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDL 61 Query: 91 YDGEVIDRRYEDVTN 105 G+V + E + Sbjct: 62 VKGDVKIMKEELQKS 76 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 39/76 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +RK MSQ + + + + ++SN+E R P+I + + LD Sbjct: 1 MNIGRQIQYLRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDD 60 Query: 172 IYFGDEVIVPKSIKRA 187 + GD I+ + ++++ Sbjct: 61 LVKGDVKIMKEELQKS 76 >gi|257785053|ref|YP_003180270.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473560|gb|ACV51679.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 364 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK N +Q+E+A N +V+ +E+ I+ + + + +S D++ Sbjct: 3 LSEKIMSLRKRNGWSQEELARQLNVSRQSVSKWESMASMPDIQKIMTMSELFGVSTDYLL 62 Query: 92 DGEVIDRR 99 E+ D Sbjct: 63 KDEMEDLP 70 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 43/92 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ S+RK G SQ E + L + ++S +E ++P+I+ + ++ D+ Sbjct: 1 MLLSEKIMSLRKRNGWSQEELARQLNVSRQSVSKWESMASMPDIQKIMTMSELFGVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + +P + ++S +S + SS Sbjct: 61 LLKDEMEDLPATAASLDSAETSSESATPESSS 92 >gi|225377956|ref|ZP_03755177.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM 16841] gi|225210207|gb|EEG92561.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM 16841] Length = 339 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G +IK++R++ +QK++A AV+ +EN + + + + I D Sbjct: 1 MKTIGNKIKELRRSKGMSQKDIADKLGVTSQAVSKWENDGSLPEMTMLPDIASLFGIQID 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 +++ R + Sbjct: 61 DLFEYSTEKRYESIEKKLQYGRVMTNMEF 89 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 38/77 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++K +R+ KGMSQ + LG+ + +S +E ++PE+ I + +D Sbjct: 1 MKTIGNKIKELRRSKGMSQKDIADKLGVTSQAVSKWENDGSLPEMTMLPDIASLFGIQID 60 Query: 171 WIYFGDEVIVPKSIKRA 187 ++ +SI++ Sbjct: 61 DLFEYSTEKRYESIEKK 77 >gi|307545572|ref|YP_003898051.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307217596|emb|CBV42866.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 200 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R++ +R+ +Q+E+A A S ++L E S S+ + + +S Sbjct: 6 DVGARLRQLRQERQLSQRELAKRAQVTNSTISLIEQNSVSPSVSSLKKILDALPVSITAF 65 Query: 91 YDGEVID 97 + GE Sbjct: 66 FAGEEPS 72 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +GARL+ +R+++ +SQ E K + NST+S EQ P + +KI + Sbjct: 5 FDVGARLRQLRQERQLSQRELAKRAQVTNSTISLIEQNSVSPSVSSLKKILDALPVSITA 64 Query: 172 IYFGDEVIVPKSIKRAKG 189 + G+E P+ RA+ Sbjct: 65 FFAGEEPSHPRPFYRAEE 82 >gi|294502078|ref|YP_003566143.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] gi|294342062|emb|CBH22727.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] Length = 392 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 12/117 (10%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G R++ RK + +QKE+A SA++ +E+G L Y + Sbjct: 6 YEALGQRLRQARKQAHMSQKEVAGHLGVTASALSQYESGKRKIGALALERLARLYSVPLS 65 Query: 89 WIYDGEVIDRRYE-------DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 ++ E + R + + N + ++ +R+ + + +L G+ Sbjct: 66 SLFSEEGGEERPDWERALLGETENMSPEGRKGVAKLVRRVRQFRELH-----ELAGV 117 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 42/96 (43%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + +D A+G RL+ RK MSQ E LG+ S LS YE G+ ++ ++ Sbjct: 1 MQTVDYEALGQRLRQARKQAHMSQKEVAGHLGVTASALSQYESGKRKIGALALERLARLY 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 L ++ + +RA ++ S + +K Sbjct: 61 SVPLSSLFSEEGGEERPDWERALLGETENMSPEGRK 96 >gi|257887020|ref|ZP_05666673.1| prophage Lp1 protein 8 [Enterococcus faecium 1,141,733] gi|257898175|ref|ZP_05677828.1| prophage Lp1 protein 8 [Enterococcus faecium Com15] gi|257823074|gb|EEV50006.1| prophage Lp1 protein 8 [Enterococcus faecium 1,141,733] gi|257836087|gb|EEV61161.1| prophage Lp1 protein 8 [Enterococcus faecium Com15] Length = 127 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++R + TQ+E+A A +E+G L N ++++ D++ G Sbjct: 8 EKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDYLL-G 66 Query: 94 EVIDRRYEDVTNKKRLDPY 112 ++ D + LD Sbjct: 67 RNKTPKWADENDLIELDKM 85 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + ++K +R K M+Q E LG+ + YE G+ P+ + + + Sbjct: 1 MGVEMFPEKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVT 60 Query: 169 LDWIYFGDEV 178 D++ ++ Sbjct: 61 TDYLLGRNKT 70 >gi|169830948|ref|YP_001716930.1| helix-turn-helix domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169637792|gb|ACA59298.1| helix-turn-helix domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 123 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +R Q ++A S V +E G+ S+ + L + +S D + Sbjct: 4 FGETLKRLRHRMGLRQNDVAGMLGVERSTVANWERGVKQPSLDTLIKLSETFGVSLDELV 63 Query: 92 DGEVIDRRYED 102 Sbjct: 64 GAAQPTAPLPP 74 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK +R G+ Q + +LG+ ST++N+E+G P + K+ + LD Sbjct: 1 MNRFGETLKRLRHRMGLRQNDVAGMLGVERSTVANWERGVKQPSLDTLIKLSETFGVSLD 60 Query: 171 WIYFGDEVIVP 181 + + P Sbjct: 61 ELVGAAQPTAP 71 >gi|326781392|ref|ZP_08240657.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326661725|gb|EGE46571.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 203 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T E + V RI+ +R A + +E+A A +S ++ ENG ++ + L Sbjct: 1 MTQEDGELDSLVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKR 108 + S D + + D + Sbjct: 61 RALDTSLDQLVETASDDIVSNPTVDGAH 88 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + STLS E GR + + + LD + Sbjct: 13 RKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARALDTSLDQLVE 72 Query: 175 --GDEVIVPKSIKRAKGN 190 D+++ ++ A G Sbjct: 73 TASDDIVSNPTVDGAHGQ 90 >gi|317506633|ref|ZP_07964424.1| hypothetical protein HMPREF9336_00794 [Segniliparus rugosus ATCC BAA-974] gi|316255065|gb|EFV14344.1| hypothetical protein HMPREF9336_00794 [Segniliparus rugosus ATCC BAA-974] Length = 149 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 19/137 (13%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWIYDG 93 R+ +R ++ E+ A A+ +E+G+ + + S + Sbjct: 13 RLTRLRDKEGWSEAELGRLARVSPQAIRNWESGLTEGPQVDKLARVAAALGASMADLVKV 72 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 +R L +R G+ Q E +LLG+ S+ E+G Sbjct: 73 PPRER------------------YLSDLRVLAGLVQPEVARLLGVSTGYYSDLERGEKNL 114 Query: 154 EIKPARKIKQVTKKHLD 170 + A I + D Sbjct: 115 SDQHAAAIANLFHTTPD 131 Score = 36.9 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLDWIY 173 RL +R +G S+ E G+L + + N+E G T P++ ++ + + Sbjct: 11 PHRLTRLRDKEGWSEAELGRLARVSPQAIRNWESGLTEGPQVDKLARVAAALGASMADLV 70 Query: 174 F 174 Sbjct: 71 K 71 >gi|118578963|ref|YP_900213.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501673|gb|ABK98155.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 187 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R+ T + +A + ++ EN S I + +++ + Sbjct: 5 NIGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLSKIAKFFDVKIGYF 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + +E V +R + A + Sbjct: 65 FIEDDDECGFEIVHANQRKSVSKVFAPI 92 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IGA++K +R++K ++ K +G + +S E P I KI + Sbjct: 1 MSGLNIGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLSKIAKFFDVK 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKK 195 + + + D+ I A +S K Sbjct: 61 IGYFFIEDDDECGFEIVHANQRKSVSK 87 >gi|284800921|ref|YP_003412786.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284056483|gb|ADB67424.1| transcriptional regulator [Listeria monocytogenes 08-5578] Length = 108 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 2/107 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +R TQ ++ N + +++ +ENG + + + +S D++ Sbjct: 2 FGKILKTLRINRGMTQADLGSKLNISKVSISKYENGNQFPDTDTLKRIADIFNVSTDFLL 61 Query: 92 DGEVIDRRYEDVTNKKRL--DPYAIGARLKSIRKDKGMSQIEFGKLL 136 E + + + L D ++ K + E K L Sbjct: 62 GREEAIPQNLAFDDLRGLTEDDLKKVNNYIALIKKQRQELEEIEKEL 108 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G LK++R ++GM+Q + G L + ++S YE G P+ ++I + D++ Sbjct: 1 MFGKILKTLRINRGMTQADLGSKLNISKVSISKYENGNQFPDTDTLKRIADIFNVSTDFL 60 Query: 173 YFGDEVI 179 +E I Sbjct: 61 LGREEAI 67 >gi|254831247|ref|ZP_05235902.1| hypothetical protein Lmon1_07812 [Listeria monocytogenes 10403S] Length = 158 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK +Q ++A V +E G + L + + +S D++ Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 + + +D A +K I + E Sbjct: 64 DDNNLADTI---AAHIDSNATEEDIKEILAYIEEKRKEHAN 101 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 40/87 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL +RK KG SQ + LG ++NYEQG P+ + KI + D++ Sbjct: 1 MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 D+ + +I + ++++ K+ Sbjct: 61 LGRDDNNLADTIAAHIDSNATEEDIKE 87 >gi|83953755|ref|ZP_00962476.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841700|gb|EAP80869.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 236 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA N T ++ A A S ++ ENG S + L EIS + Sbjct: 55 DLGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQL 114 Query: 91 YDGEVIDRRYEDVTNKK 107 + + + K Sbjct: 115 FTPPSPGQINGRMAVTK 131 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + + G+ STLS E G+ P + +K+ + + ++ Sbjct: 58 ARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQLFT 116 >gi|303242127|ref|ZP_07328617.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590314|gb|EFL60072.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 196 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 35/90 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK +R+ N Q ++A ++ +E G S L L + + +S D++ Sbjct: 11 MSQRIKQLREENKINQHQLAEILGVKNQTISNYEAGEREPSYGVLLKLADYFNVSTDFLL 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 I + L+ A L+ I Sbjct: 71 GRTNISHSDLGQKTEYLLEHDAYSDTLQEI 100 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R++ ++Q + ++LG+ N T+SNYE G P K+ D++ Sbjct: 11 MSQRIKQLREENKINQHQLAEILGVKNQTISNYEAGEREPSYGVLLKLADYFNVSTDFLL 70 >gi|291560882|emb|CBL39682.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 253 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 5/101 (4%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G + ++RK N TQK++A + V+ +E G+ ++ + + + +++ Sbjct: 6 NEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVT 65 Query: 89 WIYDGEVIDRRYEDVTNKKRL-----DPYAIGARLKSIRKD 124 + GE ID + T + A+ + RK+ Sbjct: 66 ELLRGEKIDTQKNIDTKEVEELVVGSLDMAVRNSIHQHRKN 106 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 37/72 (51%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK+K ++Q + + L + + T+S +E+G ++P + I + + + G+++ Sbjct: 15 ELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELLRGEKID 74 Query: 180 VPKSIKRAKGNQ 191 K+I + + Sbjct: 75 TQKNIDTKEVEE 86 >gi|229000727|ref|ZP_04160239.1| hypothetical protein bmyco0003_52430 [Bacillus mycoides Rock3-17] gi|228759027|gb|EEM08061.1| hypothetical protein bmyco0003_52430 [Bacillus mycoides Rock3-17] Length = 145 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+++K R++ N +Q+++A AV +E+ I + L YE++ D + Sbjct: 5 NLGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDEL 64 Query: 91 YDG 93 G Sbjct: 65 IKG 67 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 36/71 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G++LK R+ K SQ + + +G+ + +E ++ P+I + ++ + Sbjct: 1 MNNMNLGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVT 60 Query: 169 LDWIYFGDEVI 179 +D + G E + Sbjct: 61 IDELIKGSEDV 71 >gi|221194780|ref|ZP_03567837.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] gi|221185684|gb|EEE18074.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] Length = 364 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK N +Q+E+A N +V+ +E+ I+ + + + +S D++ Sbjct: 3 LSEKIMSLRKRNGWSQEELARQLNVSRQSVSKWESMAAMPDIQKIMAMSELFGVSTDYLL 62 Query: 92 DGEVIDRR 99 E+ D Sbjct: 63 KDEMEDLP 70 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 41/92 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ S+RK G SQ E + L + ++S +E +P+I+ + ++ D+ Sbjct: 1 MLLSEKIMSLRKRNGWSQEELARQLNVSRQSVSKWESMAAMPDIQKIMAMSELFGVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + +P + + S +S + SS Sbjct: 61 LLKDEMEDLPATATSLDSAELSSESATPESSS 92 >gi|254387045|ref|ZP_05002322.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194345867|gb|EDX26833.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 223 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 4/91 (4%) Query: 20 IITPEIRQYWKDV----GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 + TPE + DV G R++ +R+ T ++ S ++ E+G ++ Sbjct: 1 MATPEQDEELADVLTAVGPRLRALRQQRGTTLAQLGEITGISLSTLSRLESGQRRPTLEL 60 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 L L + ++ D + Sbjct: 61 LLPLAKAHRVALDELVGAPETGDPRIRPRPF 91 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+ +G + + G++ G+ STLS E G+ P ++ + + + LD + Sbjct: 16 AVGPRLRALRQQRGTTLAQLGEITGISLSTLSRLESGQRRPTLELLLPLAKAHRVALDEL 75 Query: 173 YFGDEVIVPK 182 E P+ Sbjct: 76 VGAPETGDPR 85 >gi|291537380|emb|CBL10492.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 110 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK R TQ+ +A + + E G+ + S+ + L +S D++ Sbjct: 5 DLGVRIKQCRTMRKLTQENLAERIDVSSHYIYEIEKGLKNMSLNTLIDLSTVLNVSTDYL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 G D D + L Sbjct: 65 LFGTTSDTPCTDTIPQDNL 83 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++P +G R+K R + ++Q + + + + + E+G + + V Sbjct: 1 MNPIDLGVRIKQCRTMRKLTQENLAERIDVSSHYIYEIEKGLKNMSLNTLIDLSTVLNVS 60 Query: 169 LDWIYFGDEVIVP 181 D++ FG P Sbjct: 61 TDYLLFGTTSDTP 73 >gi|260655665|ref|ZP_05861138.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260629582|gb|EEX47776.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 247 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 29/82 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+++RK + + +A N V ENG S+ + + ++ D++ Sbjct: 8 MGANIRELRKKRGISARVLAEAVNISTPFVYDIENGRTLPSVPVLNAIAQYFGVTTDYLM 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + D A Sbjct: 68 GLDEPGAPSSADKQTAASDNEA 89 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +GA ++ +RK +G+S + + + + + E GRT+P + I Q D++ Sbjct: 8 MGANIRELRKKRGISARVLAEAVNISTPFVYDIENGRTLPSVPVLNAIAQYFGVTTDYLM 67 Query: 174 FGDEVIVPKSIKR 186 DE P S + Sbjct: 68 GLDEPGAPSSADK 80 >gi|317470678|ref|ZP_07930063.1| hypothetical protein HMPREF1011_00410 [Anaerostipes sp. 3_2_56FAA] gi|316901813|gb|EFV23742.1| hypothetical protein HMPREF1011_00410 [Anaerostipes sp. 3_2_56FAA] Length = 191 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK R + +Q E+A ++ +ENG ++ L L + IS D + Sbjct: 2 EFSKQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ + R + + Sbjct: 62 VKGDLEEMREQIKAEDIK 79 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K R D +SQ E + + + T+SN+E G+ P++K + + LD Sbjct: 1 MEFSKQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + GD + + IK + ++ S Sbjct: 61 LVKGDLEEMREQIKAEDIKKWNRDS 85 >gi|99081998|ref|YP_614152.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038278|gb|ABF64890.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 239 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 39/100 (39%) Query: 8 ETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG 67 E+S + ++ E ++ ++G R+K +R A T ++ A S + ENG Sbjct: 31 ESSFSADTHSAVLDEGEKQRIRLELGRRVKGLRSAAGMTLEQAAERTRLAVSTIYKIENG 90 Query: 68 MCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 S S L L Y + + + + +T + Sbjct: 91 KVSPSFENLLRLARGYGVGLEKLIAEPEDEVHTTRLTVTR 130 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +K+ +G R+K +R GM+ + + + ST+ E G+ P + ++ + Sbjct: 47 EKQRIRLELGRRVKGLRSAAGMTLEQAAERTRLAVSTIYKIENGKVSPSFENLLRLARGY 106 Query: 166 KKHLDWIYFGDEVIV 180 L+ + E V Sbjct: 107 GVGLEKLIAEPEDEV 121 >gi|328463951|gb|EGF35460.1| XRE family transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 105 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 42/89 (47%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 N + +L+ IR M+Q + + L + T+SN+E R +P+++ +I Sbjct: 9 TINPSEVIILNFSKQLQQIRTAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIA 68 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 ++ LD + D + K IK +K ++ Sbjct: 69 RIFSVSLDTLILDDSELNEKLIKDSKVSR 97 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ IR A++ TQ ++A + V+ +EN + + + +S D + Sbjct: 19 NFSKQLQQIRTAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDTL 78 Query: 91 YDGEVI 96 + Sbjct: 79 ILDDSE 84 >gi|313898557|ref|ZP_07832094.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956939|gb|EFR38570.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 125 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 12/124 (9%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 T +++A + + S V ++ENG A+ L + EI +Y Sbjct: 1 MTTRQLAEKLDIVPSTVVMYENGKHPIPYDVAIKLADVLEIEASLLY------------D 48 Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + LKS+R G+SQ F + +G+ S E+G P K +KI Sbjct: 49 DFSHFLSVPYTEALKSVRTALGLSQKAFAERIGIVPSYYYKIEEGNRRPSRKVYQKIYAA 108 Query: 165 TKKH 168 + Sbjct: 109 LETT 112 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 18/51 (35%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +K +R A +QK A + S E G S + + E + Sbjct: 62 LKSVRTALGLSQKAFAERIGIVPSYYYKIEEGNRRPSRKVYQKIYAALETT 112 >gi|302873538|ref|YP_003842171.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|307688282|ref|ZP_07630728.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] gi|302576395|gb|ADL50407.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 296 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIKD+RK N TQKE++ ++ V +E G + + +E++ D++ Sbjct: 5 LANRIKDLRKNNGYTQKELSSLLGIGQTTVANYEQGTRIPDTEKLNKMADLFEVTLDYLL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 K +D + Sbjct: 65 GRNEKISPSNKEVKSKTIDLKSANE 89 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 7/89 (7%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +RK+ G +Q E LLG+ +T++NYEQG IP+ + K+ + + LD++ Sbjct: 7 NRIKDLRKNNGYTQKELSSLLGIGQTTVANYEQGTRIPDTEKLNKMADLFEVTLDYLLGR 66 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +E I P N+ K D KS+N Sbjct: 67 NEKISPS-------NKEVKSKTIDLKSAN 88 >gi|42782397|ref|NP_979644.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42738322|gb|AAS42252.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 374 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYE 101 + Sbjct: 65 ICYTPQMEPED 75 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + P+ I+ Sbjct: 61 IDELICYTPQMEPEDIRD 78 >gi|319937786|ref|ZP_08012189.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319807221|gb|EFW03835.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 124 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 32/85 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R +Q+E+A + +V+ +E + L +E+S D++ G Sbjct: 5 KQLIHLRNIRGMSQEELAALMDVTRQSVSKWETNQTYPDSEKLIRLSEIFEVSTDYLLKG 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + A + Sbjct: 65 TETEITDGQYNSQAGVQMSAEVNDI 89 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +L +R +GMSQ E L+ + ++S +E +T P+ + ++ ++ + D+ Sbjct: 1 MAFSKQLIHLRNIRGMSQEELAALMDVTRQSVSKWETNQTYPDSEKLIRLSEIFEVSTDY 60 Query: 172 IYFGDEVIV 180 + G E + Sbjct: 61 LLKGTETEI 69 >gi|160893069|ref|ZP_02073857.1| hypothetical protein CLOL250_00614 [Clostridium sp. L2-50] gi|156865152|gb|EDO58583.1| hypothetical protein CLOL250_00614 [Clostridium sp. L2-50] Length = 222 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 +Q ++ E +G I RK TQK++A N + V+ +E G + Sbjct: 1 MQVCNNLVRKEADMDQISIGRFIAAERKRKGCTQKQLAEKLNISDKTVSKWECGKGFPEV 60 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 L L E +I+ + + G + ++ + +K Sbjct: 61 SLLLPLCKELDITVNELLSGARVSEEEYQKKAEENM-----VNMIKE 102 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 V + +D +IG + + RK KG +Q + + L + + T+S +E G+ PE+ Sbjct: 5 NNLVRKEADMDQISIGRFIAAERKRKGCTQKQLAEKLNISDKTVSKWECGKGFPEVSLLL 64 Query: 160 KIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSS--KKSKKDKKSSNP 205 + + ++ + G V + K+A+ N + K+ +++KK P Sbjct: 65 PLCKELDITVNELLSGARVSEEEYQKKAEENMVNMIKEREENKKKLIP 112 >gi|317471753|ref|ZP_07931093.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA] gi|316900776|gb|EFV22750.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA] Length = 159 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G IK RKA TQ E+A AV+ +ENG C + L + I+ + Sbjct: 4 QKIGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHITLNE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIG-ARLKSI 121 + G+ I+ +++ + L+S+ Sbjct: 64 LVAGQDIESTQLPEASEQNMKTMLGSCQHLRSL 96 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG +K RK +G++Q E LLG+ N +S +E G+ +P++ K+ Sbjct: 1 MDIQKIGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHIT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSS 193 L+ + G ++ + + ++ N + Sbjct: 61 LNELVAGQDIESTQLPEASEQNMKT 85 >gi|259047950|ref|ZP_05738351.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] gi|259035370|gb|EEW36625.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] Length = 166 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 35/87 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +I ++RK +Q+ +A +++ +E+G I + L ++++ D Sbjct: 1 MMKLAEKIYNLRKEKGWSQETLAEQIKVSRQSISKWESGQAVPEIEKIIELSTIFQVTTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIG 115 ++ E + + + D Y Sbjct: 61 YLLLDENTTKSQKIELTEDEKDRYYKE 87 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 40/82 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + ++ ++RK+KG SQ + + + ++S +E G+ +PEI+ ++ + + D Sbjct: 1 MMKLAEKIYNLRKEKGWSQETLAEQIKVSRQSISKWESGQAVPEIEKIIELSTIFQVTTD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQS 192 ++ + + I+ + + Sbjct: 61 YLLLDENTTKSQKIELTEDEKD 82 >gi|229182053|ref|ZP_04309349.1| transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228601468|gb|EEK58993.1| transcriptional regulator, XRE [Bacillus cereus 172560W] Length = 108 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 8/109 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G I+D+RK TQKE+A ES + ++E + + + +++S D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFKVSTD 60 Query: 89 WIY------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 ++ +G+ D E N +L P LK R K + Q E Sbjct: 61 FLLGRDFDAEGKRTDSELEQWLNDIKLAPSQKREELK--RFWKFIMQEE 107 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +RK KG++Q E + L + ST+ YE+ P+ +I K D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFKVSTD 60 Query: 171 WIYFGD 176 ++ D Sbjct: 61 FLLGRD 66 >gi|268589692|ref|ZP_06123913.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291315003|gb|EFE55456.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 103 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK+ RK + +A N + ++ +ENG+ I + + + +W + Sbjct: 7 IGIKIKNRRKELGLSGANLADKLNLSQQQISRYENGINKIPINHLVDIAEALNCPIEWFF 66 Query: 92 DGEVIDRRYEDVTNKKRLDP 111 G V + + L+ Sbjct: 67 QGYVSNSKSNKNEPSNELNQ 86 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K+ RK+ G+S L + +S YE G I I + ++W + G Sbjct: 11 IKNRRKELGLSGANLADKLNLSQQQISRYENGINKIPINHLVDIAEALNCPIEWFFQG 68 >gi|328954674|ref|YP_004372007.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328454998|gb|AEB06192.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 204 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 3/91 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I++ R +Q ++A ++ +EN ++ L L ++ + D + Sbjct: 2 QVGAHIREHRARLALSQDDLAARIYVSRQTISNWENDKTYPDVQSLLLLSAVFDATVDEL 61 Query: 91 YDGE---VIDRRYEDVTNKKRLDPYAIGARL 118 G+ + ED K+L+ YA+ + Sbjct: 62 IKGDVDAMDKTVNEDAGKMKQLEWYALACMV 92 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GA ++ R +SQ + + + T+SN+E +T P+++ + V +D Sbjct: 1 MQVGAHIREHRARLALSQDDLAARIYVSRQTISNWENDKTYPDVQSLLLLSAVFDATVDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + GD + K++ G Sbjct: 61 LIKGDVDAMDKTVNEDAGKMKQ 82 >gi|229102450|ref|ZP_04233157.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28] gi|228680935|gb|EEL35105.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28] Length = 149 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 IGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELI 62 Query: 92 DGEV 95 G Sbjct: 63 KGNQ 66 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 40/86 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +LK +R+ K SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSIGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + G++ K + K+++ Sbjct: 61 LIKGNQSFKEKIHIDEEEADFEKENE 86 >gi|194467418|ref|ZP_03073405.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454454|gb|EDX43351.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 185 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +I RK TQ+ +A + ++ +EN ++ L L Y +S D + Sbjct: 3 FGEQILSRRKELGLTQQNVANELHITRQTLSKWENNKSYPDLKLLLALSEIYHVSVDSLL 62 Query: 92 D 92 Sbjct: 63 R 63 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 34/69 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G ++ S RK+ G++Q L + TLS +E ++ P++K + ++ +D Sbjct: 1 MSFGEQILSRRKELGLTQQNVANELHITRQTLSKWENNKSYPDLKLLLALSEIYHVSVDS 60 Query: 172 IYFGDEVIV 180 + ++ + Sbjct: 61 LLRENKDLT 69 >gi|222096786|ref|YP_002530843.1| transcriptional regulator [Bacillus cereus Q1] gi|221240844|gb|ACM13554.1| transcriptional regulator [Bacillus cereus Q1] Length = 374 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + + Sbjct: 65 ISYKPQMEQEDIKD 78 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKD 78 >gi|167747135|ref|ZP_02419262.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662] gi|167654095|gb|EDR98224.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662] Length = 239 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +++K+ + RK +Q+E+ N V+ +E G + + + L +++S Sbjct: 2 EFYKN----LNRFRKEKGWSQEELGNRLNVSRQTVSKWELGTTTPEMNKLMELSRIFQVS 57 Query: 87 FDWIYDGEVID 97 D + Sbjct: 58 IDELVGNSNAP 68 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L RK+KG SQ E G L + T+S +E G T PE+ ++ ++ + +D Sbjct: 1 MEFYKNLNRFRKEKGWSQEELGNRLNVSRQTVSKWELGTTTPEMNKLMELSRIFQVSIDE 60 Query: 172 IYFGDEVIVPKSI 184 + K + Sbjct: 61 LVGNSNAPGEKEV 73 >gi|300172749|ref|YP_003771914.1| HTH-type transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887127|emb|CBL91095.1| HTH-type transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] Length = 140 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK IR+ +Q++MA N AV+ +E G I + L Y+IS D + Sbjct: 3 IGEKIKIIREDRKISQEQMAKSLNVSGQAVSNWERGKGHPDISNIIRLSEIYDISLDELI 62 Query: 92 DGEVI 96 + Sbjct: 63 REDKN 67 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 41/78 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K IR+D+ +SQ + K L + +SN+E+G+ P+I ++ ++ LD Sbjct: 1 MLIGEKIKIIREDRKISQEQMAKSLNVSGQAVSNWERGKGHPDISNIIRLSEIYDISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKG 189 + D+ +++ G Sbjct: 61 LIREDKNYKEVLLEKKIG 78 >gi|56419027|ref|YP_146345.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] gi|56378869|dbj|BAD74777.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] Length = 121 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +RK N TQK++A + ES + ++E S + L + + ++ D++ Sbjct: 3 FGKRLRFLRKKMNMTQKDLADKFSLGESTIGMYERDEREPSFEFVRQLADFFNVTTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E + L +G K + Sbjct: 63 GRTDHPNPSEQDDIPEELKDPELGLFFKEL 92 Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RL+ +RK M+Q + + ST+ YE+ P + R++ D+ Sbjct: 1 MTFGKRLRFLRKKMNMTQKDLADKFSLGESTIGMYERDEREPSFEFVRQLADFFNVTTDY 60 Query: 172 IYFGDEVIVPKS 183 + + P Sbjct: 61 LLGRTDHPNPSE 72 >gi|323126522|gb|ADX23819.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 112 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +RK TQ+E+A A +E G + + N + +S D++ Sbjct: 2 LSERLKTLRKEAGLTQEEVAKKLGISRPAYTYWEKGEKKPTPDKLTQIANLFGVSTDYLL 61 Query: 92 DGEVIDRRYEDVTN 105 + +V D Sbjct: 62 NNQVDDEIDLSEVE 75 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK++RK+ G++Q E K LG+ + +E+G P +I + D++ Sbjct: 1 MLSERLKTLRKEAGLTQEEVAKKLGISRPAYTYWEKGEKKPTPDKLTQIANLFGVSTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|125719034|ref|YP_001036167.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498951|gb|ABN45617.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 168 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 61/171 (35%), Gaps = 15/171 (8%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLANKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM--------PNST 142 + + V ++ + Y +KS + + + + T Sbjct: 62 LLEDSDKPEIKPVLSEDEKNRY--YKEVKSYGFWQVLYIFVSALAIFLFFAGSSFPAKFT 119 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKH---LDWIYFGDEVIVPKSIKRAKGN 190 + + I A I + K LD + DE + K N Sbjct: 120 ALVWLSFFLL--IASAMAINKALKIKKKYLDKVIGLDEDSKKEGAKDETKN 168 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLANKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E IK + K+ KS Sbjct: 61 LLL--EDSDKPEIKPVLSEDEKNRYYKEVKS 89 >gi|320528015|ref|ZP_08029181.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131641|gb|EFW24205.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 229 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 43/107 (40%), Gaps = 1/107 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +K +R+ ++ +Q+++A S + ++E+G + + + + + ++ Sbjct: 3 RKFSKSLKSLREEHHLSQRQLADALGVAYSTIGMYESGQREPNYETLEIIADFFNVDMNY 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + +I Y + LD + G+S F +L+ Sbjct: 63 LLGKSIIKNSYASELTEIPLDNIIFDDYF-PLHYWSGLSAGSFEELI 108 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LKS+R++ +SQ + LG+ ST+ YE G+ P + I ++++ Sbjct: 5 FSKSLKSLREEHHLSQRQLADALGVAYSTIGMYESGQREPNYETLEIIADFFNVDMNYLL 64 >gi|228959512|ref|ZP_04121199.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800192|gb|EEM47122.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 373 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKTIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVID 97 Sbjct: 65 ICYTPQM 71 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKTIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELICYTPQMGQEDIKN 78 >gi|167749516|ref|ZP_02421643.1| hypothetical protein EUBSIR_00472 [Eubacterium siraeum DSM 15702] gi|167657544|gb|EDS01674.1| hypothetical protein EUBSIR_00472 [Eubacterium siraeum DSM 15702] Length = 159 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RK+ TQ ++A S+ +E S S + + Y ++ D++ Sbjct: 3 EQLQQLRKSRGLTQDDLAEILGISLSSYQKYERDAISPSYETLCKIADFYHVTTDYLLGR 62 Query: 94 EVIDRRYEDVT 104 E ++ + Sbjct: 63 EPATDPFDMLQ 73 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +L+ +RK +G++Q + ++LG+ S+ YE+ P + KI D++ Sbjct: 1 MKEQLQQLRKSRGLTQDDLAEILGISLSSYQKYERDAISPSYETLCKIADFYHVTTDYLL 60 Query: 174 FGDEVIVP 181 + P Sbjct: 61 GREPATDP 68 >gi|153811873|ref|ZP_01964541.1| hypothetical protein RUMOBE_02266 [Ruminococcus obeum ATCC 29174] gi|149832007|gb|EDM87092.1| hypothetical protein RUMOBE_02266 [Ruminococcus obeum ATCC 29174] Length = 349 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 18/148 (12%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +++ I IR+ N +Q++ A AV+ +E G+ + +I + + ++ I Sbjct: 5 KDSNQNIAKTILKIRQDNKLSQEQFAEIVGVTRQAVSRWEMGISAPNINTLILMSEKFNI 64 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 D + +D + ++ T + + L + G+ + + Sbjct: 65 QVDEMLKSRDVDEKNDNKTTPPKKNKNYSITFL--LIGILGL----------ISTPFFAE 112 Query: 146 YEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++Q R + K A + D+I+ Sbjct: 113 WQQKRNMELFKTA------YEHSYDYIF 134 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 4/93 (4%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N+ + I + IR+D +SQ +F +++G+ +S +E G + P I + + Sbjct: 2 NRSKDSNQNIAKTILKIRQDNKLSQEQFAEIVGVTRQAVSRWEMGISAPNINTLILMSEK 61 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 +D + +V K KK+K Sbjct: 62 FNIQVDEMLKSRDVDE----KNDNKTTPPKKNK 90 >gi|167746942|ref|ZP_02419069.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662] gi|167653902|gb|EDR98031.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662] Length = 159 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G IK RKA TQ E+A AV+ +ENG C + L + I+ + Sbjct: 4 QKIGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHITLNE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIG-ARLKSI 121 + G+ I+ +++ + L+S+ Sbjct: 64 LVAGQDIESTQLPEASEQNMKTMLGSCQHLRSL 96 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG +K RK +G++Q E LLG+ N +S +E G+ +P++ K+ Sbjct: 1 MDIQKIGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHIT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSS 193 L+ + G ++ + + ++ N + Sbjct: 61 LNELVAGQDIESTQLPEASEQNMKT 85 >gi|314935353|ref|ZP_07842706.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] gi|313656688|gb|EFS20427.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] Length = 137 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 37/73 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +RK+ N +Q+++A +++ +E + + ++ L + + +S + + Sbjct: 4 KIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWERQVSNPDLKTILEITKLFNVSLNQL 63 Query: 91 YDGEVIDRRYEDV 103 G I + + V Sbjct: 64 IKGVEIMQVNKYV 76 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 38/65 (58%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +RK K MSQ + + LG+ ++SN+E+ + P++K +I ++ L+ + G Sbjct: 7 HQIQKLRKSKNMSQEKLAEKLGVSRHSISNWERQVSNPDLKTILEITKLFNVSLNQLIKG 66 Query: 176 DEVIV 180 E++ Sbjct: 67 VEIMQ 71 >gi|229197431|ref|ZP_04324158.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293] gi|228586055|gb|EEK44146.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293] Length = 374 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + Sbjct: 65 ICYTPQMEQEDIKD 78 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELICYTPQMEQEDIKD 78 >gi|217978763|ref|YP_002362910.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217504139|gb|ACK51548.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 217 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 4 NPFLETSLKSLQEYTLIITPE-----IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLE 58 PF+ +S K+ E TL R + +G +I+ RK + T E+A A Sbjct: 3 EPFVTSSGKARPEETLETGSSAPHVAERTLEEAIGAQIRMHRKRLDITGGELAAAAGLST 62 Query: 59 SAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ ENG S S+ L + Sbjct: 63 GMLSKIENGQISPSLSTLQSLARALNQPLSSFFT 96 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIGA+++ RK ++ E G+ LS E G+ P + + + + + L Sbjct: 35 AIGAQIRMHRKRLDITGGELAAAAGLSTGMLSKIENGQISPSLSTLQSLARALNQPLSSF 94 Query: 173 YF-GDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + +E +K +G ++ K Sbjct: 95 FTPFEEHHDCSFVKAGRGVNIERRGTKAGHH 125 >gi|145593721|ref|YP_001158018.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145303058|gb|ABP53640.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 196 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K + TR++ +R + E+A N S ++ E G + S+ L L + Sbjct: 6 EIEKVIRTRLRALRTTLGFSLDELAARTNLSPSTISRIETGKRTISLDVLLPLAAALHVD 65 Query: 87 FDWIYDGEVIDRRYEDVTNKK 107 D + D + + Sbjct: 66 LDSLLDVRNDEDVVIRPMPDR 86 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RL+++R G S E + ST+S E G+ + + LD + Sbjct: 10 VIRTRLRALRTTLGFSLDELAARTNLSPSTISRIETGKRTISLDVLLPLAAALHVDLDSL 69 Query: 173 Y 173 Sbjct: 70 L 70 >gi|224541898|ref|ZP_03682437.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM 15897] gi|224525132|gb|EEF94237.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 GT +K +R+ QKE+ + V+ +E + L + + +S D++ Sbjct: 4 KFGTNVKQLREKRGIDQKELGEIVGVSDKTVSSWEINRTEPKMGIVQQLADYFGVSTDYL 63 Query: 91 YDGEVIDRRYEDVT 104 G D YE+V Sbjct: 64 IKGNHDDAIYENVN 77 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 36/60 (60%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K +R+ +G+ Q E G+++G+ + T+S++E RT P++ +++ D++ G+ Sbjct: 8 NVKQLREKRGIDQKELGEIVGVSDKTVSSWEINRTEPKMGIVQQLADYFGVSTDYLIKGN 67 >gi|330822028|ref|YP_004350890.1| Transcriptional regulator, XRE family protein [Burkholderia gladioli BSR3] gi|327374023|gb|AEA65378.1| Transcriptional regulator, XRE family protein [Burkholderia gladioli BSR3] Length = 191 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 35/103 (33%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + I E +G RI+ +R+ T E+A+ A + ++ E G + S++ + Sbjct: 2 VPILDESMSASAAIGGRIRALRQRLKLTLDEVAVMAGISKPFLSQVERGRATPSLQSLVG 61 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +S + + + + + Sbjct: 62 IARALGVSMQYFVEAPTEAKSVRRAETLQFFSFADSANSFARL 104 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R++++R+ ++ E + G+ LS E+GR P ++ I + + + Sbjct: 14 AIGGRIRALRQRLKLTLDEVAVMAGISKPFLSQVERGRATPSLQSLVGIARALGVSMQYF 73 Query: 173 YFGDEVIVPKSIKRAK 188 + KS++RA+ Sbjct: 74 V--EAPTEAKSVRRAE 87 >gi|226310713|ref|YP_002770607.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226093661|dbj|BAH42103.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 203 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 4/85 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ RK TQ+E+A + ++ +EN + L + +++ DW+ Sbjct: 57 LSQRLRTARKTKGLTQEELAEHVCTTKGTISNYENNHSTPPNDMLRQLADVLDVTTDWLL 116 Query: 92 DGEV----IDRRYEDVTNKKRLDPY 112 TN + LD Sbjct: 117 GRTDEVTAYILPATGETNHRSLDEL 141 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL++ RK KG++Q E + + T+SNYE + P R++ V DW Sbjct: 55 LMLSQRLRTARKTKGLTQEELAEHVCTTKGTISNYENNHSTPPNDMLRQLADVLDVTTDW 114 Query: 172 IYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + DEV + N S +K +P Sbjct: 115 LLGRTDEVTAYILPATGETNHRSLDELLQEKIDDP 149 >gi|255282774|ref|ZP_05347329.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255266795|gb|EET60000.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 147 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K IR N+ TQ+EMA AV+ +ENG + +I + +++S + + Sbjct: 7 LKKIRIENSLTQEEMAERLAVTRQAVSRWENGDATPNIETLKQISTAFDVSINTLL 62 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK IR + ++Q E + L + +S +E G P I+ ++I ++ Sbjct: 1 METKDVLKKIRIENSLTQEEMAERLAVTRQAVSRWENGDATPNIETLKQISTAFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|160916079|ref|ZP_02078286.1| hypothetical protein EUBDOL_02106 [Eubacterium dolichum DSM 3991] gi|158431803|gb|EDP10092.1| hypothetical protein EUBDOL_02106 [Eubacterium dolichum DSM 3991] Length = 194 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 11/142 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK R+ +Q+E+A+ ++ +E I+ + L N + +S D Sbjct: 2 DIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDNF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-----------MP 139 ++ + R L + S F + Sbjct: 62 IKEDIKEMREIVEKATITKFNVISVVFLIELIVVAVSSYPLFSIKGNIGIVIWLCLFAIT 121 Query: 140 NSTLSNYEQGRTIPEIKPARKI 161 T S E+ + +I+ ++I Sbjct: 122 LYTASKIEKFKKSHDIQTYKEI 143 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++K R+ + +SQ E + + T+SN+E ++ P+IK + + LD D Sbjct: 6 QIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDNFIKED 65 Query: 177 EVIVPKSIKRA 187 + + +++A Sbjct: 66 IKEMREIVEKA 76 >gi|312126654|ref|YP_003991528.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776673|gb|ADQ06159.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 105 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG RIK++R+ + ++A A +S ++ ENG S +I + + N I+ Sbjct: 3 DVGKRIKELREQCGLSMSKLAKIAGVGQSTLSYIENGERSPTIDVIMKICNALGITLVEF 62 Query: 91 YDGEVI 96 + GE Sbjct: 63 FGGEEK 68 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 35/75 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +G R+K +R+ G+S + K+ G+ STLS E G P I KI L Sbjct: 1 MFDVGKRIKELREQCGLSMSKLAKIAGVGQSTLSYIENGERSPTIDVIMKICNALGITLV 60 Query: 171 WIYFGDEVIVPKSIK 185 + G+E +S K Sbjct: 61 EFFGGEEKTHLESPK 75 >gi|302672233|ref|YP_003832193.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396706|gb|ADL35611.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 364 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK R+ TQ ++A N E A++ +ENG I + + + ++ D + Sbjct: 6 ENIKRYRQQKCMTQSQLADVFNVSEQAISRWENGNTYPDITLLPAIADYFHVTIDELMGM 65 Query: 94 EVIDRRYEDVTNKKRL 109 E E ++ Sbjct: 66 ESYKDEREIEKVFEQC 81 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 4/95 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +K R+ K M+Q + + + +S +E G T P+I I +D Sbjct: 1 MIKLNENIKRYRQQKCMTQSQLADVFNVSEQAISRWENGNTYPDITLLPAIADYFHVTID 60 Query: 171 WIY----FGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + DE + K ++ + N K K Sbjct: 61 ELMGMESYKDEREIEKVFEQCRENDRKGHVHKSVK 95 >gi|229150820|ref|ZP_04279032.1| Transcriptional regulator (Phage-related) protein [Bacillus cereus m1550] gi|228632609|gb|EEK89226.1| Transcriptional regulator (Phage-related) protein [Bacillus cereus m1550] Length = 138 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 17/135 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +RK +N Q+++A + ESA +E G S+ L +Y++S ++ Sbjct: 9 IKERLKRLRKLHNLKQRDVAEYLDISESAYGYYEQGRNEPSLDSVRKLAEKYDVSVSYLL 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 GE + T+ + I ++ LG+ N + E+ + Sbjct: 69 -GETDEEGNYSKTSDEYDPITEISKYIQQ---------------LGIDNMGFFDIEKWKN 112 Query: 152 IPEIKPARKIKQVTK 166 + + +IK+ Sbjct: 113 L-SPEDVEEIKKHFD 126 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RLK +RK + Q + + L + S YEQGR P + RK+ + + Sbjct: 6 MSYIKERLKRLRKLHNLKQRDVAEYLDISESAYGYYEQGRNEPSLDSVRKLAEKYDVSVS 65 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 ++ + S + + ++ SK Sbjct: 66 YLLGETDEEGNYSKTSDEYDPITEISK 92 >gi|76818409|ref|YP_336666.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126445514|ref|YP_001061010.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126456620|ref|YP_001074047.1| DNA-binding cupin domain-containing protein [Burkholderia pseudomallei 1106a] gi|167721896|ref|ZP_02405132.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167847952|ref|ZP_02473460.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|237508050|ref|ZP_04520765.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei MSHR346] gi|242312736|ref|ZP_04811753.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254185569|ref|ZP_04892156.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254192180|ref|ZP_04898678.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur 52237] gi|254264681|ref|ZP_04955546.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] gi|76582882|gb|ABA52356.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126225005|gb|ABN88510.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126230388|gb|ABN93801.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a] gi|157987660|gb|EDO95427.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur 52237] gi|184209803|gb|EDU06846.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|235000255|gb|EEP49679.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei MSHR346] gi|242135975|gb|EES22378.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254215683|gb|EET05068.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] Length = 202 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 31/92 (33%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 + +P VG +I+ +R T +++ A +S ++ E + +I Sbjct: 8 RRTPAPASPATGATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIA 67 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 A L N IS D ++ Sbjct: 68 VAWRLTNALGISLDELFAQPKAPETIRVDGPH 99 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 27 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFA- 85 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 86 -QPKAPETIR 94 >gi|228963418|ref|ZP_04124579.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228796312|gb|EEM43759.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 117 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +RK+ + TQ+++ N + +N +EN M S+ L + + +++S D + Sbjct: 7 FGQNLKKLRKSKDLTQEQLGEQLNLSRNQINNYENAMFEPSMETLLQISSFFDVSLDLLC 66 Query: 92 DGEVIDRRYEDVTNKKRLDP-YAIGARLKSIRKDKGM 127 +G + K + YA + R K + Sbjct: 67 NGYSNTKEEMLRNTLKEVQQTYAALDEPRRERFCKQL 103 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G LK +RK K ++Q + G+ L + + ++NYE P ++ +I LD + Sbjct: 6 VFGQNLKKLRKSKDLTQEQLGEQLNLSRNQINNYENAMFEPSMETLLQISSFFDVSLDLL 65 Query: 173 YFGDEVIVPKSIKRA 187 G + ++ Sbjct: 66 CNGYSNTKEEMLRNT 80 >gi|212716513|ref|ZP_03324641.1| hypothetical protein BIFCAT_01439 [Bifidobacterium catenulatum DSM 16992] gi|212660594|gb|EEB21169.1| hypothetical protein BIFCAT_01439 [Bifidobacterium catenulatum DSM 16992] Length = 188 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 17/147 (11%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENG---MCSTSIRYALYLRNEYEISFDWIY 91 R++D+R + +++A + + +FEN + + + A + + ++ Sbjct: 42 RLQDLRLEEGMSLEQLAGLSGVDHDRLAMFENNPETVRNMHLDTACQIAKALHCNVLELH 101 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E + + L+ IR+ +G +Q E ++ G+P +S +E G Sbjct: 102 PDEGWRGG-----------IHCAESGLRDIRRTRGYTQSELSEMTGIPQPNISWFETGYR 150 Query: 152 IPE---IKPARKIKQVTKKHLDWIYFG 175 + AR++ + + Sbjct: 151 STSGMRLDTARRLSEALQCDPTDFLKE 177 Score = 39.9 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR---TIPEIKPARKIKQVTKK 167 A RL+ +R ++GMS + L G+ + L+ +E + A +I + Sbjct: 36 MEAQLMRLQDLRLEEGMSLEQLAGLSGVDHDRLAMFENNPETVRNMHLDTACQIAKALHC 95 Query: 168 HLDWI 172 ++ + Sbjct: 96 NVLEL 100 >gi|83589108|ref|YP_429117.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572022|gb|ABC18574.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 115 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K++R+ Q+++A V +E G + + L + +S D + Sbjct: 4 FGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQPGLETLVRLSRLFGVSLDELV 63 Query: 92 DGE 94 E Sbjct: 64 GVE 66 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 38/79 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK +R+ KG+ Q + +++G+ T++N+E+G P ++ ++ ++ LD Sbjct: 1 MLRFGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQPGLETLVRLSRLFGVSLD 60 Query: 171 WIYFGDEVIVPKSIKRAKG 189 + + P + + Sbjct: 61 ELVGVERAATPLPLASYRS 79 >gi|50122325|ref|YP_051492.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49612851|emb|CAG76301.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 136 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 6/122 (4%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 I+ E + + ++G RI +RK TQ ++A N + AV +E G I Sbjct: 12 TTMAAPISNEEQVFITELGKRITALRKEAGMTQTQVAQALNVSQQAVQAWEAGRRRIQIS 71 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 + +S + + E + K L Q + Sbjct: 72 ILPAVARVLSVSLEDLLGEEAEKAARKRGPTPKWQQLIEEIDSLPKA------KQKMISE 125 Query: 135 LL 136 +L Sbjct: 126 ML 127 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 ++N++++ +G R+ ++RK+ GM+Q + + L + + +E GR +I + Sbjct: 17 PISNEEQVFITELGKRITALRKEAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAV 76 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 +V L+ + G+E + R +G + ++ S P Sbjct: 77 ARVLSVSLEDLL-GEEA---EKAARKRGPTPKWQQLIEEIDSLP 116 >gi|331701810|ref|YP_004398769.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129153|gb|AEB73706.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 125 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +R+ +Q ++A N S + ++E + + L N +++S D++ Sbjct: 3 LGQTISSLRERRGLSQVQLAKKLNIGTSTLGMWETDKRKPNPDALVSLANYFDVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + D + L Sbjct: 63 -GNTASEKGSAPEWATEQDRKDLRKFL 88 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G + S+R+ +G+SQ++ K L + STL +E + P + D+ Sbjct: 1 MTLGQTISSLRERRGLSQVQLAKKLNIGTSTLGMWETDKRKPNPDALVSLANYFDVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + KG+ +++D+K Sbjct: 61 LLG--------NTASEKGSAPEWATEQDRKD 83 >gi|228998574|ref|ZP_04158161.1| hypothetical protein bmyco0003_31350 [Bacillus mycoides Rock3-17] gi|228761042|gb|EEM10001.1| hypothetical protein bmyco0003_31350 [Bacillus mycoides Rock3-17] Length = 143 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 4/132 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ RK TQ+ +A N + ++ +ENG + S L N ++ D++ Sbjct: 3 ERLKEARKMRKLTQQGLADKVNATKGTISNYENGHSTPSNEMLKDLANILGVTTDYLLGR 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + + + D I L+ + L + + + Sbjct: 63 DDELGPSNQLPELTKKDTRDIARDLEKTLE----DLENSEDALMFDGEPIDEHTREMIRI 118 Query: 154 EIKPARKIKQVT 165 ++ + ++ + Sbjct: 119 SLENSMRMAKEL 130 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 39/90 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK RK + ++Q + T+SNYE G + P + + + + D++ Sbjct: 1 MTERLKEARKMRKLTQQGLADKVNATKGTISNYENGHSTPSNEMLKDLANILGVTTDYLL 60 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 D+ + P + + ++ +D + + Sbjct: 61 GRDDELGPSNQLPELTKKDTRDIARDLEKT 90 >gi|167755197|ref|ZP_02427324.1| hypothetical protein CLORAM_00702 [Clostridium ramosum DSM 1402] gi|167705247|gb|EDS19826.1| hypothetical protein CLORAM_00702 [Clostridium ramosum DSM 1402] Length = 264 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G RI RK TQK++ N + AV+ +E G+ I L L ++S D Sbjct: 3 NKEIGIRILSARKNLGYTQKQLGNLINVSDKAVSKWERGIGCPDISLLLPLSEALKMSID 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + G V+D + KK + ++K+I Sbjct: 63 ELIGGTVVD-----KSEKKTVQNLINYTKIKAI 90 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG R+ S RK+ G +Q + G L+ + + +S +E+G P+I + + K Sbjct: 1 MDNKEIGIRILSARKNLGYTQKQLGNLINVSDKAVSKWERGIGCPDISLLLPLSEALKMS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 +D + G V + +K + K Sbjct: 61 IDELIGGTVVDKSEKKTVQNLINYTKIKAIENKER 95 >gi|110679954|ref|YP_682961.1| transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109456070|gb|ABG32275.1| transcriptional regulator HTH-3 family, putative [Roseobacter denitrificans OCh 114] Length = 207 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA + T ++ A A S ++ ENG S + L IS + Sbjct: 26 DLGVRVRELRKARDWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNISIPQL 85 Query: 91 YD 92 + Sbjct: 86 FT 87 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK + + + G+ STLS E G+ P +K+ + ++ Sbjct: 31 VRELRKARDWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNISIPQLFT--- 87 Query: 178 VIVPKSIKRAKGNQSSKKS 196 P ++A G + KS Sbjct: 88 ---PPHAEQASGRLAVTKS 103 >gi|315640497|ref|ZP_07895605.1| DNA-binding protein [Enterococcus italicus DSM 15952] gi|315483701|gb|EFU74189.1| DNA-binding protein [Enterococcus italicus DSM 15952] Length = 194 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 47/139 (33%), Gaps = 8/139 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++K R+ N +Q+ +A ++ +EN I + L ++I+ D + Sbjct: 2 NFSKQLKKYRELNGYSQEILAEKIYVTRQTISKWENDKTYPDIHNLIALSVLFDITLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL--------GMPNST 142 G+V + + + + + S FG G+ Sbjct: 62 VKGDVATMKKMVNSEHMDKNTKGMLFFILLALIVGVPSITIFGAKGYLPFGILWGISMVF 121 Query: 143 LSNYEQGRTIPEIKPARKI 161 E+ + +K ++I Sbjct: 122 ALKIEKEKKKANVKTLKEI 140 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ G SQ + + + T+S +E +T P+I + + LD Sbjct: 1 MNFSKQLKKYRELNGYSQEILAEKIYVTRQTISKWENDKTYPDIHNLIALSVLFDITLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + K + ++++K Sbjct: 61 LVKGDVATMKKMVNSEHMDKNTK 83 >gi|150018438|ref|YP_001310692.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904903|gb|ABR35736.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 36/90 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RKA +Q+++A +V +E G I + L +++S D + + Sbjct: 5 EQLQTLRKAKGLSQEKLAEFLGISRQSVAKWEVGQSYPDIARLIALSEFFKVSIDKLVND 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + R NK I L +K Sbjct: 65 YEENCRLSIEENKVNNINRNIIDFLCRAKK 94 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 43/83 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L+++RK KG+SQ + + LG+ +++ +E G++ P+I + + K +D Sbjct: 1 MSFQEQLQTLRKAKGLSQEKLAEFLGISRQSVAKWEVGQSYPDIARLIALSEFFKVSIDK 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + E SI+ K N ++ Sbjct: 61 LVNDYEENCRLSIEENKVNNINR 83 >gi|266621706|ref|ZP_06114641.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288866607|gb|EFC98905.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 291 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +RK NN TQ+++A AV+ +E+G + L + + + D + G Sbjct: 5 DNLQVLRKRNNMTQEQLAEQLEVSRQAVSKWESGQSYPEMEKLLIICDMFHCDMDSLVKG 64 Query: 94 E 94 + Sbjct: 65 D 65 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +RK M+Q + + L + +S +E G++ PE++ I + +D Sbjct: 1 MSFSDNLQVLRKRNNMTQEQLAEQLEVSRQAVSKWESGQSYPEMEKLLIICDMFHCDMDS 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVKGD 65 >gi|83942534|ref|ZP_00954995.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83846627|gb|EAP84503.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 229 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA N T ++ A A S ++ ENG S + L EIS + Sbjct: 48 DLGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQL 107 Query: 91 YDGEVIDRRYEDVTNKK 107 + + + K Sbjct: 108 FTPPSAGQINGRMAVTK 124 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + + G+ STLS E G+ P + +K+ + + ++ Sbjct: 51 ARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQLFT 109 >gi|225571208|ref|ZP_03780206.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM 15053] gi|225160039|gb|EEG72658.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM 15053] Length = 114 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D ++ +R +Q+E+A+ +SAVN++E G + + + +++ D Sbjct: 7 MADFANVLRLLRNGRGLSQQELALSLGISKSAVNMYERGERQPNFETLELIADFFKVDTD 66 Query: 89 WIYDGEVIDRRYEDVTNKKRLD 110 ++ R T D Sbjct: 67 YLLGRTNAARTAYPGTVAAHFD 88 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 L+ +R +G+SQ E LG+ S ++ YE+G P + I K D Sbjct: 7 MADFANVLRLLRNGRGLSQQELALSLGISKSAVNMYERGERQPNFETLELIADFFKVDTD 66 Query: 171 WIY 173 ++ Sbjct: 67 YLL 69 >gi|206974503|ref|ZP_03235419.1| DNA-binding protein [Bacillus cereus H3081.97] gi|206747146|gb|EDZ58537.1| DNA-binding protein [Bacillus cereus H3081.97] Length = 374 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + + Sbjct: 65 ISYKPQMEQEDIKD 78 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKD 78 >gi|166030732|ref|ZP_02233561.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC 27755] gi|166029524|gb|EDR48281.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC 27755] Length = 222 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 33/80 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K GT I + RK TQK + N + AV+ +E G + L E IS Sbjct: 5 KATGTFIAECRKEKGLTQKALGEKLNVTDRAVSKWETGRSFPDVAILEDLCQELGISVSE 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + G+ I+ + +K L Sbjct: 65 LLAGKKIEAEHYQEETEKIL 84 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G + RK+KG++Q G+ L + + +S +E GR+ P++ + Q + + Sbjct: 6 ATGTFIAECRKEKGLTQKALGEKLNVTDRAVSKWETGRSFPDVAILEDLCQELGISVSEL 65 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSK 197 G ++ + + S SK Sbjct: 66 LAGKKIEAEHYQEETEKILVSSISK 90 >gi|291523310|emb|CBK81603.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 336 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I + RK N +Q+E+A AV+ +E+ ++ L + + +S D++ Sbjct: 3 LADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFCVSTDYLL 62 Query: 92 DGEVIDRRYED 102 E+ Sbjct: 63 KDEMKAENITY 73 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + RK G SQ E LG+ +S +E +P+++ ++ ++ D++ + Sbjct: 7 ITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFCVSTDYLLKDE- 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + ++I + ++S + K N Sbjct: 66 -MKAENITYHESSESYAEPLKKVTMEN 91 >gi|320008070|gb|ADW02920.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R++ R+ + T ++ S ++ E G ++ L L EY +S D++ Sbjct: 13 MGPRLRAARERHGSTLAGVSCATGIAPSTLSRIETGRRKPTLEVVLRLAEEYGVSLDYL 71 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL++ R+ G + G+ STLS E GR P ++ ++ + LD++ Sbjct: 12 AMGPRLRAARERHGSTLAGVSCATGIAPSTLSRIETGRRKPTLEVVLRLAEEYGVSLDYL 71 >gi|237734947|ref|ZP_04565428.1| predicted protein [Mollicutes bacterium D7] gi|229381723|gb|EEO31814.1| predicted protein [Coprobacillus sp. D7] Length = 264 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G RI RK TQK++ N + AV+ +E G+ I L L ++S D Sbjct: 3 NKEIGIRILSARKNLGYTQKQLGNLINVSDKAVSKWERGIGCPDISLLLPLSEALKMSID 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + G V+D + KK + ++K+I Sbjct: 63 ELIGGTVVD-----KSEKKTVQNLINYTKIKAI 90 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG R+ S RK+ G +Q + G L+ + + +S +E+G P+I + + K Sbjct: 1 MDNKEIGIRILSARKNLGYTQKQLGNLINVSDKAVSKWERGIGCPDISLLLPLSEALKMS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 +D + G V + +K + K Sbjct: 61 IDELIGGTVVDKSEKKTVQNLINYTKIKAIENKER 95 >gi|229145898|ref|ZP_04274277.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24] gi|296503830|ref|YP_003665530.1| transcriptional repressor [Bacillus thuringiensis BMB171] gi|228637506|gb|EEK93957.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24] gi|296324882|gb|ADH07810.1| transcriptional repressor [Bacillus thuringiensis BMB171] Length = 374 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQIEFG 133 + + RL + + + +G+ + + Sbjct: 65 ISYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECRGIIKKYYS 108 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYTPQMEQEDIKN 78 >gi|293550683|ref|ZP_06673350.1| transcriptional regulator [Enterococcus faecium E1039] gi|291603210|gb|EFF33395.1| transcriptional regulator [Enterococcus faecium E1039] Length = 145 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 33/85 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +RK + T + +A + ++ +ENG I L Y I +++ Sbjct: 3 DKLKRLRKEHGITHENLAEKLHVSRQTISNWENGNTLPDIENLKLLSQFYHIPLSYLFAE 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++ K L I + Sbjct: 63 KEEEAFSPLESSNKDLKKLLIFLSI 87 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 39/80 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK +RK+ G++ + L + T+SN+E G T+P+I+ + + Q L +++ Sbjct: 1 MKDKLKRLRKEHGITHENLAEKLHVSRQTISNWENGNTLPDIENLKLLSQFYHIPLSYLF 60 Query: 174 FGDEVIVPKSIKRAKGNQSS 193 E ++ + + Sbjct: 61 AEKEEEAFSPLESSNKDLKK 80 >gi|227507976|ref|ZP_03938025.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192550|gb|EEI72617.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 196 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K RK N+ Q ++AI N ++ +E G + I + + + Y++ D + Sbjct: 7 ENLKFFRKQNHLNQNQLAIKLNVSRPTISSWETGRTTPDIDTLVRIASFYQVPVDQLLFT 66 Query: 94 EVIDRRYEDVTNK 106 + + + K Sbjct: 67 RSHSKGNINKSQK 79 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LK RK ++Q + L + T+S++E GRT P+I +I + +D + F Sbjct: 7 ENLKFFRKQNHLNQNQLAIKLNVSRPTISSWETGRTTPDIDTLVRIASFYQVPVDQLLF 65 >gi|118587212|ref|ZP_01544640.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118432354|gb|EAV39092.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 199 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 45/87 (51%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + S R++ GM+Q + +LL + LSN+E+G+ P++ ++ ++ LD Sbjct: 7 FMVFSEIISSKRRELGMTQDQVAELLHVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLD 66 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD+ ++ K + ++ + KK + Sbjct: 67 VLIKGDKEVMKKVQEDSQDLRKQKKLR 93 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I R+ TQ ++A + A++ +E G + + L Y++S D + G+ Sbjct: 14 ISSKRRELGMTQDQVAELLHVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDVLIKGDK 73 Query: 96 IDRRYEDVTNK 106 + ++ Sbjct: 74 EVMKKVQEDSQ 84 >gi|14141827|ref|NP_115293.1| hypothetical protein SAVP004 [Staphylococcus aureus subsp. aureus Mu50] gi|228475859|ref|ZP_04060571.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] gi|14020888|dbj|BAB47512.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|228270091|gb|EEK11556.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] Length = 137 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 37/73 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +RK+ N +Q+++A +++ +E + + ++ L + + +S + + Sbjct: 4 KIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSLNQL 63 Query: 91 YDGEVIDRRYEDV 103 G I + + V Sbjct: 64 IKGVEIMQVNKYV 76 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 38/65 (58%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +RK K MSQ + + LG+ ++SN+E+ + P++K +I ++ L+ + G Sbjct: 7 HQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSLNQLIKG 66 Query: 176 DEVIV 180 E++ Sbjct: 67 VEIMQ 71 >gi|228995259|ref|ZP_04154973.1| hypothetical protein bpmyx0001_58780 [Bacillus pseudomycoides DSM 12442] gi|228764497|gb|EEM13332.1| hypothetical protein bpmyx0001_58780 [Bacillus pseudomycoides DSM 12442] Length = 142 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+++K R++ N +Q+++A AV +E+ I + L YE++ D + Sbjct: 2 NLGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDEL 61 Query: 91 YDG 93 G Sbjct: 62 IKG 64 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 34/68 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G++LK R+ K SQ + + +G+ + +E ++ P+I + ++ + +D Sbjct: 1 MNLGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDE 60 Query: 172 IYFGDEVI 179 + G E + Sbjct: 61 LIKGSEDV 68 >gi|325567313|ref|ZP_08143980.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] gi|325158746|gb|EGC70892.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] Length = 284 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 17/159 (10%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +I RK N TQ +A AV+ +E G I L +S D Sbjct: 6 MRKIGQQIATKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAILGLSID 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + ++ + + + +K Q L+ S+ Sbjct: 66 ELLGKPAAAVQHYQAGTAQPKEIAELAPLIK--------PQELSA-LIQEEPFQESSL-- 114 Query: 149 GRTIPEIKPARKIKQVTK-KHLDWIYFGDEVIVPKSIKR 186 ++ ++ L + G E I ++ Sbjct: 115 -----DLDLLPRLAPHLNSADLQHLLNGAENIPEDVMEE 148 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 34/68 (50%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + IG ++ + RK+K ++Q L + +SN+E+G ++P+I+ ++ + Sbjct: 1 MSEFNMRKIGQQIATKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAIL 60 Query: 166 KKHLDWIY 173 +D + Sbjct: 61 GLSIDELL 68 >gi|262282360|ref|ZP_06060128.1| predicted protein [Streptococcus sp. 2_1_36FAA] gi|262261651|gb|EEY80349.1| predicted protein [Streptococcus sp. 2_1_36FAA] Length = 96 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 31/88 (35%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G ++K +R+ +Q +++ ++ +EN + L + Y+IS D Sbjct: 1 MQMLGKQLKLLREQKGYSQNQISEYLGTTRQTISNWENDKTIIDSHSLIRLADFYQISLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + I LD Sbjct: 61 ELCGRTKIPVYKNSKIKSMILDNACTLW 88 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +LK +R+ KG SQ + + LG T+SN+E +TI + ++ + LD Sbjct: 1 MQMLGKQLKLLREQKGYSQNQISEYLGTTRQTISNWENDKTIIDSHSLIRLADFYQISLD 60 Query: 171 WI 172 + Sbjct: 61 EL 62 >gi|229135297|ref|ZP_04264092.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196] gi|228648166|gb|EEL04206.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196] Length = 242 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K VG +IK RK TQKE+ + + + ++ +ENG + N + Sbjct: 16 KQNISKYVGQQIKHYRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDALFAIANALD 75 Query: 85 ISFDWIYDGEVIDRRYEDVTN 105 +S + ++ + T Sbjct: 76 VSINDLFPSTMEPYTITKETT 96 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ +G ++K RK K M+Q E G +G ++T+S+YE G PE I Sbjct: 15 MKQNISKYVGQQIKHYRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDALFAIANAL 74 Query: 166 KKHLDWIY 173 ++ ++ Sbjct: 75 DVSINDLF 82 >gi|49478178|ref|YP_037436.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329734|gb|AAT60380.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 374 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + + Sbjct: 65 ISYKPQMEQEDIKD 78 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKD 78 >gi|307265008|ref|ZP_07546569.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919993|gb|EFN50206.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 130 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK N TQ+++A S + +E + + + +S D++ Sbjct: 5 DRLKELRKEKNLTQEDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDYLLGR 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR 117 I +++T DP + Sbjct: 65 TDIRSPVDEITEAVSDDPELLEFW 88 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 37/70 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +RK+K ++Q + K+LG+ ST++ YE R P+ + +KI +D+ Sbjct: 1 MTFSDRLKELRKEKNLTQEDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDY 60 Query: 172 IYFGDEVIVP 181 + ++ P Sbjct: 61 LLGRTDIRSP 70 >gi|170755295|ref|YP_001781771.1| transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|169120507|gb|ACA44343.1| transcriptional regulator [Clostridium botulinum B1 str. Okra] Length = 149 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +RK + TQ+E+A S V ++E S + + +S D++ Sbjct: 4 ERIKKLRKERDITQEELAKNIGVSTSMVGMYETNARKPSYEVLSKIAKYFRVSTDYLLGE 63 Query: 94 EVIDRRYEDVTNKKRLD 110 E K D Sbjct: 64 TNYKTTGEKFDAKLNSD 80 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+K +RK++ ++Q E K +G+ S + YE P + KI + + D++ Sbjct: 1 MLNERIKKLRKERDITQEELAKNIGVSTSMVGMYETNARKPSYEVLSKIAKYFRVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 AK N K+++S Sbjct: 61 LGETNYKTTGEKFDAKLNSDKVDQIKEEES 90 >gi|163856318|ref|YP_001630616.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|163260046|emb|CAP42347.1| predicted transcriptional regulator [Bordetella petrii] Length = 219 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +RK + + ++A ++ E G+ S S++ L ++ +S D + Sbjct: 32 LGQQLRQLRKQHGLSLMQVAKACGISVGLLSQVERGLSSPSVKIVTLLAGQFGVSVDSLL 91 Query: 92 DG 93 G Sbjct: 92 RG 93 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 R + +D + +G +L+ +RK G+S ++ K G+ LS E+G Sbjct: 10 LASRRSARASREPAPASVIDFW-LGQQLRQLRKQHGLSLMQVAKACGISVGLLSQVERGL 68 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFG 175 + P +K + +D + G Sbjct: 69 SSPSVKIVTLLAGQFGVSVDSLLRG 93 >gi|119964507|ref|YP_946525.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119951366|gb|ABM10277.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 495 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 2/109 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK T +++ S ++L EN + L ++ D + Sbjct: 27 LGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENAKREPKLGLLQQLAASLNVTIDQLL 86 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA--RLKSIRKDKGMSQIEFGKLLGM 138 E RR +R + L IR + +G+ Sbjct: 87 GAEPPSRRAALEIELERYQRGPLYESLNLPKIRISSRLPLDVLESQVGL 135 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 32/86 (37%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 LD ++G R++ +RK G++ + +G S LS E + Sbjct: 4 VSWNREVASPSLPAASPELDVISLGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENAK 63 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGD 176 P++ +++ +D + + Sbjct: 64 REPKLGLLQQLAASLNVTIDQLLGAE 89 >gi|319936268|ref|ZP_08010686.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1] gi|319808644|gb|EFW05188.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1] Length = 212 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 6/85 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +RK N TQ+++A ++ +E I + + + +S D++ Sbjct: 8 KKLISLRKKYNFTQQDLADKLGISNKTISRWETSESYPDIDLLPKIADIFHVSIDYLLK- 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 ++D + D + + Sbjct: 67 -----EHDDFKELDKFDIISYIPWI 86 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +L S+RK +Q + LG+ N T+S +E + P+I KI + Sbjct: 1 MNENTFSKKLISLRKKYNFTQQDLADKLGISNKTISRWETSESYPDIDLLPKIADIFHVS 60 Query: 169 LDWIYFGDEVIVP 181 +D++ + Sbjct: 61 IDYLLKEHDDFKE 73 >gi|291549688|emb|CBL25950.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 253 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 5/101 (4%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G + ++RK N TQK++A + V+ +E G+ ++ + + + +++ Sbjct: 6 NEKFGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVT 65 Query: 89 WIYDGEVIDRRYEDVTNKKRL-----DPYAIGARLKSIRKD 124 + GE ID + T + A+ + RK+ Sbjct: 66 ELLRGEKIDTQKNIDTKEIEELVVGSLDMAVRDSIHQHRKN 106 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 37/72 (51%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK+K ++Q + + L + + T+S +E+G ++P + I + + + G+++ Sbjct: 15 ELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELLRGEKID 74 Query: 180 VPKSIKRAKGNQ 191 K+I + + Sbjct: 75 TQKNIDTKEIEE 86 >gi|20065987|ref|NP_612853.1| putative CI-like transcriptional repressor [Clostridium phage phi3626] gi|168211659|ref|ZP_02637284.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] gi|19908318|gb|AAL96794.1| putative CI-like transcriptional repressor [Clostridium phage phi3626] gi|170710397|gb|EDT22579.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] Length = 240 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 14/176 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 ++G RIK+ RK+ T E+A N+ + V +E+ + I L + + + Sbjct: 2 NIGQRIKEKRKSMGLTVDEVAKKLNKNRATVYRYESNDIENLPISILEPLAEILQTTPSY 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST-LSNYEQ 148 + E + + NK +LK + + S EF K++G+PNST S ++ Sbjct: 62 LMGWEDNELNSYENLNKS--------KKLKELILSRYNSIREFSKIVGIPNSTLTSALDK 113 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + KI V + E + S ++ + +D + N Sbjct: 114 SIGGMAVDRIIKICDVLNIDVKTF----EPLENVSSNTNNYSEEEQNHIEDLRKLN 165 Score = 42.2 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE-QGRTIPEIKPARKIKQVTKKHLD 170 IG R+K RK G++ E K L +T+ YE I + ++ + Sbjct: 1 MNIGQRIKEKRKSMGLTVDEVAKKLNKNRATVYRYESNDIENLPISILEPLAEILQTTPS 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 ++ ++ + K + Sbjct: 61 YLMGWEDNELNSYENLNKSKK 81 >gi|229170504|ref|ZP_04298155.1| transcriptional regulator, XRE [Bacillus cereus AH621] gi|228612974|gb|EEK70148.1| transcriptional regulator, XRE [Bacillus cereus AH621] Length = 108 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G I+D+RK TQKE+A ES + ++E + + + + +S D Sbjct: 1 MKTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPY 112 ++ D + NK LD + Sbjct: 61 FLL---GRDFNVTEDGNKIELDQW 81 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +RK +G++Q E L + ST+ YE+ P+ +I D Sbjct: 1 MKTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTD 60 Query: 171 WIYF--------GDEVIVPKSIKRAKGNQSSKKSK 197 ++ G+++ + + +K K S K+ + Sbjct: 61 FLLGRDFNVTEDGNKIELDQWLKDIKFAPSQKREE 95 >gi|152999279|ref|YP_001364960.1| putative phage repressor [Shewanella baltica OS185] gi|151363897|gb|ABS06897.1| putative phage repressor [Shewanella baltica OS185] Length = 240 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 36/99 (36%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + T + Y K +G RI++ RK TQK + AV +E + L Sbjct: 1 MSTKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFAL 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + W+ +G++ + + D + + L Sbjct: 61 AKSLKCDLSWLLNGQIATKPESNAEWAGGFDLWDNDSPL 99 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 T K +G R++ RK+ G++Q G L+G+ ++ +E+ T P+ + Sbjct: 1 MSTKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFAL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKS 183 + K L W+ G P+S Sbjct: 61 AKSLKCDLSWLLNGQIATKPES 82 >gi|260905597|ref|ZP_05913919.1| transcriptional regulator [Brevibacterium linens BL2] Length = 483 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 3/132 (2%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E +G RI+ RK T E+ + S ++ ENG TS+ + Sbjct: 12 EAEADTLSIGRRIRFFRKQRGLTLTELGEQVGRAASQISTIENGKRETSVTLLSAIAKAL 71 Query: 84 EISFDWIYDGEVID--RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 + D +D + E + + P L +R K + ++G+ Sbjct: 72 HTEVAELIDPTPVDGRQALELEAERNQASPMYSALGLPQVR-IKSLPHDALEAIVGLQRQ 130 Query: 142 TLSNYEQGRTIP 153 E+ P Sbjct: 131 LGQVLERRAATP 142 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +IG R++ RK +G++ E G+ +G S +S E G+ + I + + Sbjct: 16 DTLSIGRRIRFFRKQRGLTLTELGEQVGRAASQISTIENGKRETSVTLLSAIAKALHTEV 75 Query: 170 DWIY 173 + Sbjct: 76 AELI 79 >gi|52142223|ref|YP_084606.1| DNA-binding protein; transcriptional regulator [Bacillus cereus E33L] gi|51975692|gb|AAU17242.1| DNA-binding protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 374 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + + Sbjct: 65 ISYKPQMEQEDIKN 78 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKN 78 >gi|227364951|ref|ZP_03848993.1| bacteriophage transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325682427|ref|ZP_08161944.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|227070005|gb|EEI08386.1| bacteriophage transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324978266|gb|EGC15216.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 124 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 40/98 (40%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + ++ + +G RI D+R N+ +Q ++A S + ++E S + Sbjct: 3 ITVSNYKKVKDMSIGNRIADLRTNNHMSQFQLAKVLGIGTSTLGMYETNKRKPSPKVLNK 62 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + +++S D++ + + + T + L Sbjct: 63 IADYFDVSTDYLLGRKSKADQVHNATVDEALGTIMSFE 100 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 V+N K++ +IG R+ +R + MSQ + K+LG+ STL YE + P K KI Sbjct: 4 TVSNYKKVKDMSIGNRIADLRTNNHMSQFQLAKVLGIGTSTLGMYETNKRKPSPKVLNKI 63 Query: 162 KQVTKKHLDWIY 173 D++ Sbjct: 64 ADYFDVSTDYLL 75 >gi|228909080|ref|ZP_04072909.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228850588|gb|EEM95413.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] Length = 108 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 4/107 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G I+D+RK TQKE+A ES + ++E + + + +++S D Sbjct: 1 MKTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFDVSTD 60 Query: 89 WIYDGEVIDRRYED----VTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 ++ + + K + R + R K + Q E Sbjct: 61 FLLGRDFNVTEDRNKIELDQWLKDIKFAPSQKREELKRFWKFLMQEE 107 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +RK +G++Q E L + ST+ YE+ P+ +I D Sbjct: 1 MKTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFDVSTD 60 Query: 171 WIYFGDEVIVPKSIK 185 ++ D + K Sbjct: 61 FLLGRDFNVTEDRNK 75 >gi|255282960|ref|ZP_05347515.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255266499|gb|EET59704.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 228 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 11/153 (7%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 II + ++GT+IK R A+ +Q+E+A ++ +ENG ++ L L Sbjct: 24 IIECSQEECEMEIGTQIKKYRLASEMSQEELAEKIYVTRQTISNWENGRNYPDVKSLLLL 83 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTN-----KKRLDPYAIGARLKSIRK---DKGMSQIE 131 + + IS D + G++ + + + YA+ + + + Sbjct: 84 SSLFNISLDILVKGDIEEMKEKINEEDIRRLNNDGKIYAVLLFITVLSIAPLFLFLHIAG 143 Query: 132 FGKLLG---MPNSTLSNYEQGRTIPEIKPARKI 161 G + E+ + +I+ ++I Sbjct: 144 IAIWAGIYAVTMFYAHRIEKQKKAHDIQTYKEI 176 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 38/86 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K R MSQ E + + + T+SN+E GR P++K + + LD Sbjct: 34 MEIGTQIKKYRLASEMSQEELAEKIYVTRQTISNWENGRNYPDVKSLLLLSSLFNISLDI 93 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + + I + + K Sbjct: 94 LVKGDIEEMKEKINEEDIRRLNNDGK 119 >gi|166033316|ref|ZP_02236145.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC 27755] gi|166027673|gb|EDR46430.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G + ++RK N TQK++A + V+ +E G+ ++ + + + +++ Sbjct: 13 NEKFGLFVTELRKKKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVT 72 Query: 89 WIYDGEVIDRRYEDVTNK 106 + GE ID + T + Sbjct: 73 ELLRGEKIDTQKNIDTKE 90 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 36/72 (50%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK K ++Q + + L + + T+S +E+G ++P + I + + + G+++ Sbjct: 22 ELRKKKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELLRGEKID 81 Query: 180 VPKSIKRAKGNQ 191 K+I + + Sbjct: 82 TQKNIDTKEVEE 93 >gi|289178728|gb|ADC85974.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 348 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 59/161 (36%), Gaps = 23/161 (14%) Query: 25 IRQYWKDVG--TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ + +G ++ +R ++N TQ+++A+ +V+ +E+ + L L + Sbjct: 7 AKEKDRTMGFKDNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKAYPEMDKLLMLCDM 66 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + +S D + G+V + + + P A + + Q G Sbjct: 67 FGVSLDDLVMGDVRNGIAMSANHVEDGLPKAPMPE----MEGSALPQDITG--------- 113 Query: 143 LSNYEQGRTIPEIKP---ARKIKQVTKKHLDWIYFGDEVIV 180 YE+ ++ I + + ++ D I+ Sbjct: 114 ---YEEHMRKFDLMIPTGVSAI--IFGVSIGNLFDSDNSIL 149 >gi|154505562|ref|ZP_02042300.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC 29149] gi|153794220|gb|EDN76640.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC 29149] Length = 107 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + +Q+E+A +SAV+++E G + + +++ D++ Sbjct: 8 LKTLRTDKHLSQQELATRLGISKSAVSMYEQGRREPDFDILNKIADIFQVDADYLLGRSS 67 Query: 96 IDRRYEDVTNKKRLD 110 + E VT LD Sbjct: 68 LSHEPEPVTIAAHLD 82 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 LK++R DK +SQ E LG+ S +S YEQGR P+ KI + + D Sbjct: 1 MAVFANILKTLRTDKHLSQQELATRLGISKSAVSMYEQGRREPDFDILNKIADIFQVDAD 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|256847452|ref|ZP_05552898.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256716116|gb|EEU31091.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 110 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 39/83 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I ++R +Q ++A + + A+ +ENG S + N + +S D++ Sbjct: 2 IGDKIHELRTQKRMSQTDLAKAIHASQQAITKWENGKSEPSSSVINSIANYFNVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 +D++ ++L Y+I Sbjct: 62 GRTSEKLPDKDLSKNQKLIAYSI 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++ +R K MSQ + K + ++ +E G++ P I D++ Sbjct: 1 MIGDKIHELRTQKRMSQTDLAKAIHASQQAITKWENGKSEPSSSVINSIANYFNVSTDYL 60 Query: 173 YFGDEVIVP 181 +P Sbjct: 61 LGRTSEKLP 69 >gi|310658350|ref|YP_003936071.1| Xre family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825128|emb|CBH21166.1| Transcriptional regulator, XRE family [Clostridium sticklandii] Length = 328 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK + +Q+E+A N +++ +E + L L + +S D++ Sbjct: 3 LADKIILLRKKSGWSQEELAEKLNVSRQSISKWEGAQSVPGMDKILQLSEIFGVSTDYLL 62 Query: 92 DG 93 Sbjct: 63 KD 64 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +RK G SQ E + L + ++S +E +++P + ++ ++ D++ D Sbjct: 7 IILLRKKSGWSQEELAEKLNVSRQSISKWEGAQSVPGMDKILQLSEIFGVSTDYLLK-DS 65 Query: 178 VIVPKSI 184 + + + + Sbjct: 66 IELEEYV 72 >gi|302385536|ref|YP_003821358.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196164|gb|ADL03735.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 110 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 42/97 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K++G R+ D RK N TQ+ +A AN ++ E G + + + N E Sbjct: 1 MDDLLKEIGKRMYDRRKQKNLTQEALAEKANVTPQTISTAELGHKAMRPETIISVCNALE 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 IS D++ G++ Y + K + L+ I Sbjct: 61 ISTDYLLRGDITPSDYNTLIQKSSNLTPSQYRHLEDI 97 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 21/55 (38%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 RK K ++Q + + T+S E G + + + D++ GD Sbjct: 16 RKQKNLTQEALAEKANVTPQTISTAELGHKAMRPETIISVCNALEISTDYLLRGD 70 >gi|229550962|ref|ZP_04439687.1| XRE family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258538327|ref|YP_003172826.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|229315677|gb|EEN81650.1| XRE family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257150003|emb|CAR88975.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 373 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I RK TQ+ +A +++V+ +E G I L +++S D + Sbjct: 4 NVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDQL 63 Query: 91 YDGEVI 96 + Sbjct: 64 MAYDAQ 69 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A + + RK KG++Q +G+ +++S +E G++ P+I + +D + Sbjct: 7 AVISAFRKQKGVTQEALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDQLMAY 66 Query: 176 DEVIVPKSIKR 186 D + P I+R Sbjct: 67 DAQLQPSEIRR 77 >gi|325662004|ref|ZP_08150623.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471667|gb|EGC74886.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium 4_1_37FAA] Length = 186 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 38/98 (38%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + ++G +++++R TQ+E+A A + ++ E + S SI + L Sbjct: 2 ERMSVYMNIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCL 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + ++ + + ++ I Sbjct: 62 GTNLKDFFSDDSDEQIVFPKEDFFEKTDAELLNTIEWI 99 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +L+ +R +KG++Q E + +S E+ T P I + Q +L Sbjct: 7 YMNIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTNLK 66 Query: 171 WIYFGD 176 + D Sbjct: 67 DFFSDD 72 >gi|94313037|ref|YP_586246.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356889|gb|ABF10977.1| transcriptional regulator, Xre/Cro/CI family [Cupriavidus metallidurans CH34] Length = 212 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 37/87 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ ++RK N T +E+A A+ +S ++ E G+ S +I L L + ++ D + Sbjct: 30 IAERLAELRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLADALGVTVDQLI 89 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + R+ RL Sbjct: 90 TRSSRANEILHIRAADRIPFSPSTERL 116 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +RK G++ E + + S LS E+G + P I K+ +D + Sbjct: 32 ERLAELRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLADALGVTVDQLIT 90 >gi|332654058|ref|ZP_08419802.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332517144|gb|EGJ46749.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 223 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 24/73 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I+ +RK TQ+E+A V+L+E G + + + + + Sbjct: 7 IAKHIRSLRKRAGLTQEELAQRLYVTRQTVSLWELGKTRPDVETLQAIADCLGVDLLQVL 66 Query: 92 DGEVIDRRYEDVT 104 G Sbjct: 67 YGPEQTAPQSTTR 79 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 39/75 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I ++S+RK G++Q E + L + T+S +E G+T P+++ + I L Sbjct: 5 LSIAKHIRSLRKRAGLTQEELAQRLYVTRQTVSLWELGKTRPDVETLQAIADCLGVDLLQ 64 Query: 172 IYFGDEVIVPKSIKR 186 + +G E P+S R Sbjct: 65 VLYGPEQTAPQSTTR 79 >gi|328944742|gb|EGG38903.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 168 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 67/174 (38%), Gaps = 15/174 (8%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 KLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM--------PNST 142 + + + V ++ + Y +KS + + + + T Sbjct: 62 LLEDSDKPKIKPVLSEDEKNRY--YKEVKSYGFWQVLYIFISALAIFLFFAGSSFPAKFT 119 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 + + I A I + K ++ D+VI + + +G Q K+ Sbjct: 120 ALVWLSFFLL--IASAMAINKALKIKKKYL---DKVIGLDKVTKKEGAQDETKN 168 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + D IK + K+ KS Sbjct: 61 LLLEDSDKPK--IKPVLSEDEKNRYYKEVKS 89 >gi|253730391|ref|ZP_04864556.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733848|ref|ZP_04868013.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|253725871|gb|EES94600.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728151|gb|EES96880.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|329732444|gb|EGG68794.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 189 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A +++ +EN I L + + ++ D + Sbjct: 2 NLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D+ ++ L+ + + Sbjct: 62 VKG--TIPFVPDIKAQRSLNLWTYVMLI 87 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + L + ++SN+E +++P+I + ++ LD Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + G VP + N Sbjct: 61 LVKGTIPFVPDIKAQRSLN 79 >gi|293377825|ref|ZP_06624010.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] gi|292643535|gb|EFF61660.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] Length = 123 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++R + TQ+E+A A +E+G L N ++++ D++ G Sbjct: 4 EKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDYLL-G 62 Query: 94 EVIDRRYEDVTNKKRLDPY 112 ++ D + LD Sbjct: 63 RNKTPKWADENDLIELDKM 81 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++K +R K M+Q E LG+ + YE G+ P+ + + + D++ Sbjct: 1 MFPEKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDYL 60 Query: 173 YFGDEV 178 ++ Sbjct: 61 LGRNKT 66 >gi|296129256|ref|YP_003636506.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296021071|gb|ADG74307.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 75 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V RI+ +R TQ E+A V E G S S+ A + + D + Sbjct: 8 VTNRIRALRTERGDMTQAELARHLGVTRQTVIAIEQGRYSPSLETAFQIARALGVPLDEV 67 Query: 91 YD 92 +D Sbjct: 68 FD 69 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 115 GARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++++R ++G M+Q E + LG+ T+ EQGR P ++ A +I + LD ++ Sbjct: 9 TNRIRALRTERGDMTQAELARHLGVTRQTVIAIEQGRYSPSLETAFQIARALGVPLDEVF 68 >gi|283471920|emb|CAQ51131.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ST398] Length = 189 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A +++ +EN I L + + ++ D + Sbjct: 2 NLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D+ ++ L+ + + Sbjct: 62 VKG--TIPFVPDIKAQRSLNLWTYVMLI 87 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + L + ++SN+E +++P+I + ++ LD Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + G VP + N Sbjct: 61 LVKGTIPFVPDIKAQRSLN 79 >gi|255657067|ref|ZP_05402476.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] Length = 141 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +RK + TQ+E+A N ++ +E+G I + L Y + D + Sbjct: 2 INENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K Sbjct: 62 NHSEEKTGIIVPPKGKFF 79 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I LKS+RK +Q E + L + +++ +E G +IP+I K+ ++ LD + Sbjct: 1 MINENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60 Query: 173 YFGDEV 178 E Sbjct: 61 VNHSEE 66 >gi|160873890|ref|YP_001553206.1| putative phage repressor [Shewanella baltica OS195] gi|160859412|gb|ABX47946.1| putative phage repressor [Shewanella baltica OS195] Length = 240 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 36/99 (36%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + T + Y K +G RI++ RK TQK + AV +E + L Sbjct: 1 MSTKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFAL 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + W+ +G+V + + D + + L Sbjct: 61 AKSLKCDLSWLLNGQVAAKPESNAEWAGGFDLWDNDSPL 99 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 T K +G R++ RK+ G++Q G L+G+ ++ +E+ T P+ + Sbjct: 1 MSTKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFAL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKS 183 + K L W+ G P+S Sbjct: 61 AKSLKCDLSWLLNGQVAAKPES 82 >gi|28557093|dbj|BAC57552.1| immunity repressor protein [Clostridium sordellii] Length = 133 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + TR+K++RK T +MA N + ++ +ENG L + + +S D Sbjct: 1 METLSTRLKELRKEKGYTLDQMAQDLNTTKVTLSRYENGTREPKSETLNQLSDYFNVSID 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 +++ T + +D +K Sbjct: 61 YLF---GKTDERNPKTKDEIIDVKKAIEEIK 88 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK+KG + + + L TLS YE G P+ + ++ +D+++ + Sbjct: 8 LKELRKEKGYTLDQMAQDLNTTKVTLSRYENGTREPKSETLNQLSDYFNVSIDYLFGKTD 67 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 PK+ + + + KD+ Sbjct: 68 ERNPKTKDEIIDVKKAIEEIKDE 90 >gi|325849104|ref|ZP_08170596.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480349|gb|EGC83412.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 202 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R+K +RK++ KTQ+++A S++ ++E + S + +++S D+I Sbjct: 3 VGVRLKQLRKSSGKTQRDLAKLLYVTASSIGMYERDERTPSPDVLKKYADIFDVSLDYIL 62 Query: 92 DG 93 Sbjct: 63 GH 64 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +RK G +Q + KLL + S++ YE+ P +K + LD+I Sbjct: 7 LKQLRKSSGKTQRDLAKLLYVTASSIGMYERDERTPSPDVLKKYADIFDVSLDYIL 62 >gi|291167009|gb|EFE29055.1| transcriptional regulator, Cro/CI family [Filifactor alocis ATCC 35896] Length = 181 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I +RK +Q+E+A N A++ +E G + L L + ++ D++ + Sbjct: 5 EKILALRKQYGMSQEELAGKLNVSRQAISRWEMGTAQPDVSNILQLSKVFCVTTDYLLND 64 Query: 94 E 94 E Sbjct: 65 E 65 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 40/89 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ ++RK GMSQ E L + +S +E G P++ ++ +V D+ Sbjct: 1 MKLEEKILALRKQYGMSQEELAGKLNVSRQAISRWEMGTAQPDVSNILQLSKVFCVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + ++ G +KK+++ K Sbjct: 61 LLNDECEQEIHRSEKETGKGVTKKTQQKK 89 >gi|268609129|ref|ZP_06142856.1| hypothetical protein RflaF_06476 [Ruminococcus flavefaciens FD-1] Length = 163 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 35/78 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K++RK TQ+ + V+ +E G + + L + Y++S + I Sbjct: 6 IGKFLKELRKEKGYTQETLGEKIGVTNKTVSRWETGTYIPPVECLVMLSDIYDVSINEIV 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 G+ + + + ++ L Sbjct: 66 AGQRLSQSEFNDKAEENL 83 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 2/95 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG LK +RK+KG +Q G+ +G+ N T+S +E G IP ++ + + Sbjct: 1 MDTVMIGKFLKELRKEKGYTQETLGEKIGVTNKTVSRWETGTYIPPVECLVMLSDIYDVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSS--KKSKKDKK 201 ++ I G + + +A+ N S + S+ + K Sbjct: 61 INEIVAGQRLSQSEFNDKAEENLSEALRLSENEYK 95 >gi|259415871|ref|ZP_05739791.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259347310|gb|EEW59087.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 209 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RK + T + A A S ++ ENG S + L +IS + Sbjct: 26 DLGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYEALKKLAVGLQISVPQL 85 Query: 91 YDGEVIDRRYEDVTNKKR 108 + D+ + K Sbjct: 86 FTPPQRDQVNGRMIVTKF 103 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + G+ STLS E G+ P + +K+ + + ++ Sbjct: 29 ARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYEALKKLAVGLQISVPQLFT 87 >gi|218235252|ref|YP_002368031.1| DNA-binding protein [Bacillus cereus B4264] gi|218163209|gb|ACK63201.1| DNA-binding protein [Bacillus cereus B4264] Length = 374 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A+ +++V+ +E G I + L + + +S D + Sbjct: 5 NIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDEL 64 Query: 91 YDGEVIDRRY 100 Sbjct: 65 ICYTPQMEPE 74 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNVS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + P+ I+ Sbjct: 61 IDELICYTPQMEPEGIRN 78 >gi|323439707|gb|EGA97425.1| putative transcriptional regulator [Staphylococcus aureus O11] gi|323443280|gb|EGB00897.1| putative transcriptional regulator [Staphylococcus aureus O46] Length = 189 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A +++ +EN I L + + ++ D + Sbjct: 2 NLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D+ ++ L+ + + Sbjct: 62 VKG--TIPFVPDIKAQRSLNLWTYVMLI 87 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + L + ++SN+E +++P+I + ++ LD Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + G VP + N Sbjct: 61 LVKGTIPFVPDIKAQRSLN 79 >gi|332653329|ref|ZP_08419074.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] gi|332518475|gb|EGJ48078.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] Length = 194 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 1/89 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G I+ +R TQ+E+A + AV+ +E G + L + + Sbjct: 3 YEKIGALIRSLRTQQGLTQRELAQRLTVSDKAVSKWERGQGCPDVSLLPSLAQTLGVEVE 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + GE+++ + K L+ Y Sbjct: 63 GLLAGELLENE-QTGGTMKNLNFYVCPTC 90 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 37/68 (54%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IGA ++S+R +G++Q E + L + + +S +E+G+ P++ + Q Sbjct: 1 MDYEKIGALIRSLRTQQGLTQRELAQRLTVSDKAVSKWERGQGCPDVSLLPSLAQTLGVE 60 Query: 169 LDWIYFGD 176 ++ + G+ Sbjct: 61 VEGLLAGE 68 >gi|56696936|ref|YP_167298.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678673|gb|AAV95339.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 207 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E D+G R++++RKA + T ++ A A S ++ ENG S + L Sbjct: 19 EAEAEPLDLGARVRELRKARDWTLEQAASQAGLARSTLSKIENGQMSPTYDALKKLAVGL 78 Query: 84 EISFDWIYDGEVIDRRYEDVTNKK 107 +IS ++ + +T K Sbjct: 79 QISVPQLFTPPQKGQVNGRMTVTK 102 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 22/107 (20%) Query: 68 MCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 S + + E + LD +GAR++ +RK + Sbjct: 3 KRDPS--TLIRIARE-----------------NGAEAEAEPLD---LGARVRELRKARDW 40 Query: 128 SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 + + G+ STLS E G+ P +K+ + + ++ Sbjct: 41 TLEQAASQAGLARSTLSKIENGQMSPTYDALKKLAVGLQISVPQLFT 87 >gi|255025294|ref|ZP_05297280.1| hypothetical protein LmonocytFSL_01392 [Listeria monocytogenes FSL J2-003] Length = 158 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 5/108 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK +Q ++A V +E G + L + + +S D++ Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG--KLLGMP 139 + + +D A +K I + E K + + Sbjct: 64 DDNNLADTI---AAHIDSNATEEDIKEILAYIEEKRKEHANEKEINIT 108 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 40/87 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL +RK KG SQ + LG ++NYEQG P+ + KI + D++ Sbjct: 1 MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 D+ + +I + ++++ K+ Sbjct: 61 LGRDDNNLADTIAAHIDSNATEEDIKE 87 >gi|228911766|ref|ZP_04075535.1| transcriptional regulator [Bacillus thuringiensis IBL 200] gi|228847858|gb|EEM92743.1| transcriptional regulator [Bacillus thuringiensis IBL 200] Length = 186 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 37/75 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ RK +N +Q+++A + +++ +EN I L + + +S D + Sbjct: 2 NIGRQIQYFRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDL 61 Query: 91 YDGEVIDRRYEDVTN 105 G+V + E + Sbjct: 62 VKGDVKIMKEELQKS 76 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ RK MSQ + + + + ++SN+E R P+I + + LD Sbjct: 1 MNIGRQIQYFRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDD 60 Query: 172 IYFGDEVIVPKSIKRA 187 + GD I+ + ++++ Sbjct: 61 LVKGDVKIMKEELQKS 76 >gi|196032247|ref|ZP_03099661.1| DNA-binding protein [Bacillus cereus W] gi|228915928|ref|ZP_04079503.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|195994998|gb|EDX58952.1| DNA-binding protein [Bacillus cereus W] gi|228843746|gb|EEM88820.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 374 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + + Sbjct: 65 ISYKPQMEQEDIKN 78 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKN 78 >gi|317501814|ref|ZP_07960000.1| hypothetical protein HMPREF1026_01944 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088665|ref|ZP_08337575.1| hypothetical protein HMPREF1025_01158 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896847|gb|EFV18932.1| hypothetical protein HMPREF1026_01944 [Lachnospiraceae bacterium 8_1_57FAA] gi|330407188|gb|EGG86691.1| hypothetical protein HMPREF1025_01158 [Lachnospiraceae bacterium 3_1_46FAA] Length = 429 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + RK++GM+Q E +LLG+ N +S +E + +P+I ++ + +D I G Sbjct: 49 EFIARKRKERGMTQKEMAELLGVTNKAVSKWETSQGMPDIGILPELGKALGVTVDEILMG 108 Query: 176 DEVIVPKSIKRAKGNQSSK 194 +++ K + A ++ K Sbjct: 109 EQIEQEKRAETAVSDEDKK 127 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 4/115 (3%) Query: 13 SLQEYTLIITPEIRQYWK---DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 + E + PE R K G I RK TQKEMA AV+ +E Sbjct: 25 NTSENVIENRPEKRVKNKGGNKTGEFIARKRKERGMTQKEMAELLGVTNKAVSKWETSQG 84 Query: 70 STSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRK 123 I L ++ D I GE I++ T D + L ++ RK Sbjct: 85 MPDIGILPELGKALGVTVDEILMGEQIEQEKRAETAVSDEDKKLLEIVLERAERK 139 >gi|126736476|ref|ZP_01752217.1| DNA-binding protein, putative [Roseobacter sp. CCS2] gi|126714014|gb|EBA10884.1| DNA-binding protein, putative [Roseobacter sp. CCS2] Length = 214 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 36/78 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA+N T ++ A A S ++ ENG S + L EIS + Sbjct: 33 DLGARVRELRKASNWTLEQAAQQAGLARSTLSKIENGQMSPTYDALKKLAIGLEISVPQL 92 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + ++ + Sbjct: 93 FTPPSKGQVNGRMSVTRN 110 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + + G+ STLS E G+ P +K+ + + ++ Sbjct: 36 ARVRELRKASNWTLEQAAQQAGLARSTLSKIENGQMSPTYDALKKLAIGLEISVPQLFT 94 >gi|172057739|ref|YP_001814199.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990260|gb|ACB61182.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 294 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 5/164 (3%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + Q +G IK IR+ N TQ E+ G ++ ++ ENG S ++ + + Sbjct: 1 MNQLNVSIGNEIKRIRQERNWTQSELCQGI-CSQAEISKIENGRNSPTVDLLQQIAERFH 59 Query: 85 ISFDWIYDGEVIDRRY-EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 + + E + L A + R D+ +++ +++ + Sbjct: 60 VPVSSFFINEEKKTNFRMRDQEIIHLTRLNQYAEIFK-RIDQYLAEETDKEIIILLRYHK 118 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 E+ I + + I Q+ + + ++ I+ + Sbjct: 119 LIIEEQTNIIDYRTC--ISQLLNVSAEEKLIEESFLLYLRIQMS 160 >gi|291544366|emb|CBL17475.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 322 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +RK + +Q+E+A + +V+ +E + + L + ++ D++ Sbjct: 3 FADKLIQLRKKSGWSQEELAQQMHVSRQSVSKWEGAQSVPDLEKMVQLSRLFHVTTDYLL 62 Query: 92 DGEVIDRRYEDVTNK 106 E + + Sbjct: 63 KDEEGEPEPAPGEDP 77 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L +RK G SQ E + + + ++S +E +++P+++ ++ ++ D+ Sbjct: 1 MIFADKLIQLRKKSGWSQEELAQQMHVSRQSVSKWEGAQSVPDLEKMVQLSRLFHVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DE P+ + ++ ++ S+ Sbjct: 61 LLK-DEEGEPEPAPGEDPGEPLRRVSLEEASA 91 >gi|268590899|ref|ZP_06125120.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291313692|gb|EFE54145.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 102 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG+RIK +R+ T E+A+ N + + +E G+ I + + + ++S + Sbjct: 9 KIVGSRIKKLRREYGLTGTEVAMALNVSQQQFSRYERGINRIDIDSLVMIADFLKVSVHY 68 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + +++ + L Sbjct: 69 FLEDIDLEQSNSWTSEYNSL 88 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+K +R++ G++ E L + S YE+G +I I K + + Sbjct: 13 SRIKKLRREYGLTGTEVAMALNVSQQQFSRYERGINRIDIDSLVMIADFLKVSVHYFLED 72 Query: 176 DEVIVPKS 183 ++ S Sbjct: 73 IDLEQSNS 80 >gi|119716447|ref|YP_923412.1| helix-turn-helix domain-containing protein [Nocardioides sp. JS614] gi|119537108|gb|ABL81725.1| helix-turn-helix domain protein [Nocardioides sp. JS614] Length = 146 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 21/138 (15%) Query: 36 IKDIRKANNKTQKEMAIGANQLES-AVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ R+ TQ E+A ++ +E G + + L +I + E Sbjct: 10 LRAAREKAGLTQHELARLVGAAGGERISRWELGASVPRPDFLVKLARALDIPTLRLIHTE 69 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE--QGRTI 152 L+++R G++ E + + T +E + + Sbjct: 70 GEVPD------------------LRALRLKAGLTVPELAAAVNVAVPTYYAWEQGRWTRL 111 Query: 153 PEIKPARKIKQVTKKHLD 170 P + + + +D Sbjct: 112 PAARQLESLARGLGDTVD 129 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNS-TLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + L++ R+ G++Q E +L+G +S +E G ++P K+ + + Sbjct: 6 DPSVLRAAREKAGLTQHELARLVGAAGGERISRWELGASVPRPDFLVKLARALDIPTLRL 65 Query: 173 YFGDEVIVPKSIKRAK 188 + + R K Sbjct: 66 IHTEGEVPDLRALRLK 81 >gi|210621225|ref|ZP_03292531.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM 13275] gi|210154836|gb|EEA85842.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM 13275] Length = 118 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 2/100 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ ++RKA +Q+E+ ++ +E G + + L + + IS D + Sbjct: 5 EKLIELRKAKGLSQEELGNELGVSRQTISKWELGQSYPDFQKLVLLSDFFNISLDKLI-- 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + ID N+ + ++ + F Sbjct: 63 KDIDLDDVRENNQSDEKVSKMYEDFQTAKTALNYLLNFFA 102 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L +RK KG+SQ E G LG+ T+S +E G++ P+ + + LD Sbjct: 1 MKFNEKLIELRKAKGLSQEELGNELGVSRQTISKWELGQSYPDFQKLVLLSDFFNISLDK 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + ++ + + + ++ K +D +++ Sbjct: 61 LI--KDIDLDDVRENNQSDEKVSKMYEDFQTA 90 >gi|119962680|ref|YP_946768.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119949539|gb|ABM08450.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 213 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 31/88 (35%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + VG R++ +R N T E + S ++ E+G ++ L + Sbjct: 21 MTTDFSTMLDAVGPRLRAMRTQRNVTLAEASEATGISVSTLSRLESGQRKPTLELLLPIA 80 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKR 108 +++ + + D + Sbjct: 81 RLHQVPLEELIDAPETGDPRIHLKPHIH 108 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 Y LD A+G RL+++R + ++ E + G+ STLS E G+ P + Sbjct: 16 WQAGYMTTDFSTMLD--AVGPRLRAMRTQRNVTLAEASEATGISVSTLSRLESGQRKPTL 73 Query: 156 KPARKIKQVTKKHLDWIYFGDEVIVPK 182 + I ++ + L+ + E P+ Sbjct: 74 ELLLPIARLHQVPLEELIDAPETGDPR 100 >gi|302334320|gb|ADL24513.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus JKD6159] Length = 189 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A +++ +EN I L + + ++ D + Sbjct: 2 NLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D+ ++ L+ + + Sbjct: 62 VKG--TIPFVPDIKAQRSLNLWTYVMLI 87 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + L + ++SN+E +++P+I + ++ LD Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + G VP + N Sbjct: 61 LVKGTIPFVPDIKAQRSLN 79 >gi|325677709|ref|ZP_08157361.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110677|gb|EGC04841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 369 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 25/175 (14%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R+ + TQ+++A AV+ +E + I L N ++++ D + Sbjct: 3 IGATIKQLRQEQDITQEQLADALGITSRAVSQWETDRTAPDISQLPALANFFDVTTDHLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +D + I K Q + S EQ +T Sbjct: 63 G----------------VDIARKEEEIGKILKRVNGFQEQG----DHEASAKYLREQLKT 102 Query: 152 IPE-IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 P + + YF + +K+ K ++ ++ K P Sbjct: 103 YPNEPDLLTNLASALQT----FYFHQGKADTEELKKEKSDEIIALCERALKYYKP 153 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA +K +R+++ ++Q + LG+ + +S +E RT P+I + D Sbjct: 1 MTIGATIKQLRQEQDITQEQLADALGITSRAVSQWETDRTAPDISQLPALANFFDVTTDH 60 Query: 172 IYFGDEVIVPKSI 184 + D + I Sbjct: 61 LLGVDIARKEEEI 73 >gi|257871225|ref|ZP_05650878.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805389|gb|EEV34211.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 346 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 32/81 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I+ RK TQ+E+A AVN +E G I + +IS D + Sbjct: 2 EMGEVIRQYRKKKGLTQEELAKRLGVTAPAVNKWEKGHSHPDILLLAPIARLLDISLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + E E + LD Sbjct: 62 FSFEKELTVTEINQIIRELDH 82 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 38/75 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ RK KG++Q E K LG+ ++ +E+G + P+I I ++ LD Sbjct: 1 MEMGEVIRQYRKKKGLTQEELAKRLGVTAPAVNKWEKGHSHPDILLLAPIARLLDISLDT 60 Query: 172 IYFGDEVIVPKSIKR 186 ++ ++ + I + Sbjct: 61 LFSFEKELTVTEINQ 75 >gi|154497138|ref|ZP_02035834.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC 29799] gi|150273537|gb|EDN00665.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC 29799] Length = 417 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 25/76 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI RK +Q+ + A+ +E+ + + L + + W+ Sbjct: 3 VGQRIALKRKELGLSQEGLGDKLGVSRQAIYKWESDASLPEVEKLVALSRIFSVPVGWLL 62 Query: 92 DGEVIDRRYEDVTNKK 107 E D + Sbjct: 63 GEEEHPSGQTDTQPAE 78 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+ RK+ G+SQ G LG+ + +E ++PE++ + ++ + W Sbjct: 1 MTVGQRIALKRKELGLSQEGLGDKLGVSRQAIYKWESDASLPEVEKLVALSRIFSVPVGW 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 LLGEEE 66 >gi|229073601|ref|ZP_04206721.1| transcriptional regulator [Bacillus cereus F65185] gi|228709534|gb|EEL61588.1| transcriptional regulator [Bacillus cereus F65185] Length = 186 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I RK +N +Q+E+A + +++ +EN I L + + +S D + Sbjct: 2 NIGKQIHYFRKRDNMSQEELAAKIHVSRQSISNWENERNYPDIHNLLIMSILFNVSLDDL 61 Query: 91 YDGEVIDRRYEDVTN 105 G+V + E + Sbjct: 62 VKGDVKIMKEELQKS 76 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK MSQ E + + ++SN+E R P+I + + LD Sbjct: 1 MNIGKQIHYFRKRDNMSQEELAAKIHVSRQSISNWENERNYPDIHNLLIMSILFNVSLDD 60 Query: 172 IYFGDEVIVPKSIKRA 187 + GD I+ + ++++ Sbjct: 61 LVKGDVKIMKEELQKS 76 >gi|254512974|ref|ZP_05125040.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221532973|gb|EEE35968.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 195 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 34/67 (50%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ + +G +K++R++ ++ + +A + + ++ ENG+ S SI L + E+ Sbjct: 8 KRIDRAIGASLKELRQSRKQSARWLAEQSGISAAMISRIENGLVSPSIDTLAALADALEV 67 Query: 86 SFDWIYD 92 ++ Sbjct: 68 PIVSLFR 74 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + T KR+D AIGA LK +R+ + S + G+ + +S E G P I Sbjct: 2 QGDTPGKRIDR-AIGASLKELRQSRKQSARWLAEQSGISAAMISRIENGLVSPSIDTLAA 60 Query: 161 IKQVTKKHLDWIY 173 + + + ++ Sbjct: 61 LADALEVPIVSLF 73 >gi|256827543|ref|YP_003151502.1| putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256583686|gb|ACU94820.1| predicted transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 197 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+ + R+A +Q+++A + AV+ +E S + L Y I+ D + Sbjct: 4 EIAKRLYEYRRAAGLSQEQVAAKIDVSRQAVSKWECAEASPDTDNLIALALLYGITVDEL 63 Query: 91 YDGEVIDRRYEDV 103 + E Sbjct: 64 LFADPEKAIGEAP 76 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I RL R+ G+SQ + + + +S +E P+ + + +D Sbjct: 3 IEIAKRLYEYRRAAGLSQEQVAAKIDVSRQAVSKWECAEASPDTDNLIALALLYGITVDE 62 Query: 172 IYFGD 176 + F D Sbjct: 63 LLFAD 67 >gi|153815095|ref|ZP_01967763.1| hypothetical protein RUMTOR_01319 [Ruminococcus torques ATCC 27756] gi|145847663|gb|EDK24581.1| hypothetical protein RUMTOR_01319 [Ruminococcus torques ATCC 27756] Length = 429 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + RK++GM+Q E +LLG+ N +S +E + +P+I ++ + +D I G Sbjct: 49 EFIARKRKERGMTQKEMAELLGVTNKAVSKWETSQGMPDIGILPELGKALGVTVDEILMG 108 Query: 176 DEVIVPKSIKRAKGNQSSK 194 +++ K + A ++ K Sbjct: 109 EQIEQEKRAETAVSDEDKK 127 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 4/115 (3%) Query: 13 SLQEYTLIITPEIRQYWK---DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 + E + PE R K G I RK TQKEMA AV+ +E Sbjct: 25 NTSENVIENRPEKRVKNKGGNKTGEFIARKRKERGMTQKEMAELLGVTNKAVSKWETSQG 84 Query: 70 STSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRK 123 I L ++ D I GE I++ T D + L ++ RK Sbjct: 85 MPDIGILPELGKALGVTVDEILMGEQIEQEKRAETAVSDEDKKLLEIVLERAERK 139 >gi|212224500|ref|YP_002307736.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] gi|212009457|gb|ACJ16839.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] Length = 68 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++++R+A TQ+E+A + E G S++ A + + + + I+ Sbjct: 3 NRVRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGVLIEDIF 60 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+ +G++Q E K LG+ T+ E+G+ P +K A KI + ++ I+ Sbjct: 1 MKNRVRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGVLIEDIF 60 >gi|312899924|ref|ZP_07759242.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311292920|gb|EFQ71476.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 183 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|227507921|ref|ZP_03937970.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192635|gb|EEI72702.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 187 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G RIK IR N TQ ++A + V +EN I L +++ + Sbjct: 5 ETIGKRIKKIRIKNQLTQNQLAEKLFVTQQTVARWENDKHQPPITAVQDLAKLFDVDVSY 64 Query: 90 IYDGEVIDRRYEDV 103 + ++I R + Sbjct: 65 FFGEDLIIVRKFNF 78 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 D IG R+K IR ++Q + + L + T++ +E + P I + + ++ Sbjct: 1 MHDAETIGKRIKKIRIKNQLTQNQLAEKLFVTQQTVARWENDKHQPPITAVQDLAKLFDV 60 Query: 168 HLDWIYFGDEVIVPK 182 + + + D +IV K Sbjct: 61 DVSYFFGEDLIIVRK 75 >gi|295835325|ref|ZP_06822258.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74] gi|197696396|gb|EDY43329.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74] Length = 187 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +RK T ++ S ++ E+G+ ++ L L + ++ D + Sbjct: 4 VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 63 Query: 92 DGEVIDRRYED 102 + Sbjct: 64 GTRPVADPRVR 74 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ +RK++GM+ G+ STLS E G P ++ + + + LD + Sbjct: 6 ERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 63 >gi|150018771|ref|YP_001311025.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905236|gb|ABR36069.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 117 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +RK TQ+++A +S + + E S + L N + D++ Sbjct: 2 LGDKVKLLRKERKITQQKLAEAIGVSQSTIGMIEGNRQGASNDTLIKLANTLNTTVDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI-RKDKGMSQIEFGKLLGMPNSTLSNY 146 + + D +K+ DP ++ I R + M K++ + S Y Sbjct: 62 SDNIEE---LDFPDKRISDPGFGDDDIRRIERARRKMDPKNKEKMMKILRSAFDEY 114 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K +RK++ ++Q + + +G+ ST+ E R K+ +D++ + Sbjct: 6 VKLLRKERKITQQKLAEAIGVSQSTIGMIEGNRQGASNDTLIKLANTLNTTVDYLLSDN 64 >gi|99081186|ref|YP_613340.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99037466|gb|ABF64078.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 209 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RK + T + A A S ++ ENG S + L +IS + Sbjct: 26 DLGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYDALKKLAVGLQISVPQL 85 Query: 91 YDGEVIDRRYEDVTNKKR 108 + D+ + K Sbjct: 86 FTPPQRDQVNGRMIVTKF 103 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + G+ STLS E G+ P +K+ + + ++ Sbjct: 29 ARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYDALKKLAVGLQISVPQLFT 87 >gi|291542127|emb|CBL15237.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 68 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG + IRK +Q ++A+ + A++ +ENG+ ++ + L + + +S D Sbjct: 1 MKMVG--LHTIRKKKGYSQLKVAMDLSISREAISYYENGLRCPNLEMLVKLSDYFNVSID 58 Query: 89 WIYDGEVI 96 ++ G+ Sbjct: 59 YLITGKNF 66 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L +IRK KG SQ++ L + +S YE G P ++ K+ +D++ G Sbjct: 6 LHTIRKKKGYSQLKVAMDLSISREAISYYENGLRCPNLEMLVKLSDYFNVSIDYLITGK 64 >gi|323490301|ref|ZP_08095516.1| AnsR [Planococcus donghaensis MPA1U2] gi|323395971|gb|EGA88802.1| AnsR [Planococcus donghaensis MPA1U2] Length = 118 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + RIKD+R+A + +E+A +S V +E+G S+ + L + +EIS D Sbjct: 1 MKQLSKRIKDLREAKGLSTEELADAIGFAKSTVWAYESGKKQVSVVHLERLADYFEISVD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + D + + D + D+ ++Q E + Sbjct: 61 SLLDRDERTINVDLQNTSFLNDYNLMLD-------DQPLNQTEIAEAA 101 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+K +R+ KG+S E +G ST+ YE G+ + ++ + +D Sbjct: 1 MKQLSKRIKDLREAKGLSTEELADAIGFAKSTVWAYESGKKQVSVVHLERLADYFEISVD 60 Query: 171 WIYFGDEVIVPKSIKRA 187 + DE + ++ Sbjct: 61 SLLDRDERTINVDLQNT 77 >gi|322386543|ref|ZP_08060170.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269462|gb|EFX52395.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 169 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 10/87 (11%), Positives = 37/87 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + ++ ++RK +Q+ +A + +++ +E+G + + L ++++ D Sbjct: 1 MMKLADKLFELRKEKGWSQERLAEQISVSRQSISKWESGQALPELEKIVELSKIFQVTTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIG 115 ++ + + + ++ D Y Sbjct: 61 YLLLEDSDKPEIKPILSEDEKDRYYKE 87 >gi|256789205|ref|ZP_05527636.1| regulatory protein [Streptomyces lividans TK24] gi|289773098|ref|ZP_06532476.1| regulatory protein [Streptomyces lividans TK24] gi|289703297|gb|EFD70726.1| regulatory protein [Streptomyces lividans TK24] Length = 191 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +RK T ++ S ++ E+G+ S+ L + +++ D + Sbjct: 11 VGPRLRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAHQVPLDELV 70 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +RK++ ++ + G+ STLS E G P ++ I + + LD + Sbjct: 15 LRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAHQVPLDELVGAPP 74 Query: 178 VIVPKSIKR 186 V P+ R Sbjct: 75 VGDPRVRAR 83 >gi|21219711|ref|NP_625490.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|6468452|emb|CAB61612.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 191 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +RK T ++ S ++ E+G+ S+ L + +++ D + Sbjct: 11 VGPRLRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAHQVPLDELV 70 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +RK++ ++ + G+ STLS E G P ++ I + + LD + Sbjct: 15 LRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAHQVPLDELVGAPP 74 Query: 178 VIVPKSIKR 186 V P+ R Sbjct: 75 VGDPRVRAR 83 >gi|282909328|ref|ZP_06317144.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958772|ref|ZP_06376218.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] gi|282326896|gb|EFB57193.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789812|gb|EFC28634.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] Length = 239 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ K +G +I+ R N TQ ++ N ++ ++ +E G + + + Sbjct: 2 DKKELAKFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHIL 61 Query: 84 EISFDWIYDGEVIDRRYED 102 IS D ++ + Sbjct: 62 NISIDDLFPTRNNKKNDIT 80 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +++ R ++Q + G+ L +T+SNYE G P+ +I + +D + Sbjct: 9 FIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDL 68 Query: 173 Y 173 + Sbjct: 69 F 69 >gi|226322393|ref|ZP_03797911.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758] gi|225209193|gb|EEG91547.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758] Length = 109 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 31/76 (40%) Query: 37 KDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 K++R N+ TQ +MA SAV+++E G + + + + +++ V Sbjct: 9 KNLRMQNHYTQGQMADLLGISRSAVSMYETGNREPDLETLEKIAKFFNVDMNYLLGSSVT 68 Query: 97 DRRYEDVTNKKRLDPY 112 + + ++ Sbjct: 69 VTSDNPEPSYEDIEQM 84 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 K++R +Q + LLG+ S +S YE G P+++ KI + ++++ Sbjct: 4 FHNIFKNLRMQNHYTQGQMADLLGISRSAVSMYETGNREPDLETLEKIAKFFNVDMNYLL 63 >gi|229815595|ref|ZP_04445922.1| hypothetical protein COLINT_02647 [Collinsella intestinalis DSM 13280] gi|229808825|gb|EEP44600.1| hypothetical protein COLINT_02647 [Collinsella intestinalis DSM 13280] Length = 312 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +R + N TQ+ +A+ AV+ +E G + + + L +E+ D + G Sbjct: 5 DNLLYLRDSRNMTQEHLAMLLGVTRQAVSKWEAGASTPDMDKLVRLCEIFEVDLDELIRG 64 Query: 94 EVIDRRYEDV 103 +V R Sbjct: 65 DVTVRTVNQT 74 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L +R + M+Q LLG+ +S +E G + P++ ++ ++ + LD Sbjct: 1 MSFRDNLLYLRDSRNMTQEHLAMLLGVTRQAVSKWEAGASTPDMDKLVRLCEIFEVDLDE 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LIRGD 65 >gi|126459405|ref|YP_001055683.1| XRE family transcriptional regulator [Pyrobaculum calidifontis JCM 11548] gi|126249126|gb|ABO08217.1| transcriptional regulator, XRE family [Pyrobaculum calidifontis JCM 11548] Length = 528 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 25 IRQYWKD-VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + +Y K VG RI +R+ + E+A A +S + E G + S+ + N Sbjct: 1 MEEYLKRSVGERIAALRRERGLSLSELAERAGVSKSTLYEIEMGRVAPSVTTLWKIANAL 60 Query: 84 EI 85 E+ Sbjct: 61 EV 62 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH-----LD 170 R+ ++R+++G+S E + G+ STL E GR P + KI + + Sbjct: 11 ERIAALRRERGLSLSELAERAGVSKSTLYEIEMGRVAPSVTTLWKIANALEVGFGALVPE 70 Query: 171 WIYFGDEVIVPKSIKRAKG 189 W+ + + I+R G Sbjct: 71 WVLVSERSVDVLLIERGDG 89 >gi|149280145|ref|ZP_01886269.1| hypothetical protein PBAL39_11170 [Pedobacter sp. BAL39] gi|149229159|gb|EDM34554.1| hypothetical protein PBAL39_11170 [Pedobacter sp. BAL39] Length = 126 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 19/130 (14%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R QK++A E + +E + I+Y + N ++ Sbjct: 12 IGDHIRKKRMELKLLQKDVAKICGVSEDCITNWEKNRNTPQIQYYPRISNFLG----YL- 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +D + +LK+ R G+SQ + GK+LG+ +T+ ++E Sbjct: 67 --------------PFDVDLRTLPGKLKAHRYINGLSQKQLGKILGVDGATVCSWELEEN 112 Query: 152 IPEIKPARKI 161 P K+ Sbjct: 113 KPHKAILTKL 122 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ R + + Q + K+ G+ ++N+E+ R P+I+ +I Sbjct: 15 HIRKKRMELKLLQKDVAKICGVSEDCITNWEKNRNTPQIQYYPRISNFLG 64 >gi|332981863|ref|YP_004463304.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332699541|gb|AEE96482.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 132 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 32/84 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G R++ +R+ TQK A A++ +E G + + Y++S D+ Sbjct: 3 ETLGDRLRRLREKKEWTQKYAATVFGITSGALSNYERGERTPDAEMLKRIAEIYDVSIDY 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYA 113 + + + + D Sbjct: 63 LIGKRSLRESSQYLNESSLDDYIE 86 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 31/56 (55%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R+ K +Q + G+ + LSNYE+G P+ + ++I ++ +D++ Sbjct: 9 LRRLREKKEWTQKYAATVFGITSGALSNYERGERTPDAEMLKRIAEIYDVSIDYLI 64 >gi|257421865|ref|ZP_05598855.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|257163689|gb|EEU93649.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|315155430|gb|EFT99446.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 183 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|256961213|ref|ZP_05565384.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384161|ref|ZP_06630055.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293386975|ref|ZP_06631544.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|312907888|ref|ZP_07766871.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312978583|ref|ZP_07790321.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|256951709|gb|EEU68341.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078641|gb|EFE16005.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291083645|gb|EFE20608.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|310625979|gb|EFQ09262.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311288732|gb|EFQ67288.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 183 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|297204985|ref|ZP_06922381.1| helix-turn-helix domain protein [Lactobacillus jensenii JV-V16] gi|297149563|gb|EFH29860.1| helix-turn-helix domain protein [Lactobacillus jensenii JV-V16] Length = 136 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K++R+ANN +Q+E+A +++ +E G I L Y +S D++ Sbjct: 3 NLNERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLDYL 62 Query: 91 YDGEVIDRRYEDVT 104 + + Sbjct: 63 VGNSKSESIKINEQ 76 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK++R+ +SQ E L + ++S +E G +IP+I+ ++ ++ LD Sbjct: 1 MNNLNERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLD 60 Query: 171 WIY---FGDEVIVPKSIKRAKGN 190 ++ + + + + I R K N Sbjct: 61 YLVGNSKSESIKINEQILRKKRN 83 >gi|134103762|ref|YP_001109423.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916385|emb|CAM06498.1| transcriptional regulator, XRE family with cupin sensor [Saccharopolyspora erythraea NRRL 2338] Length = 194 Score = 75.0 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ E VG R++ +R+ + T ++ S ++ E+G + L L Sbjct: 1 MSDEFDTVLSAVGPRLRALRRRSGATLTALSETTGIPVSTLSRLESGHRKPGLELLLPLA 60 Query: 81 NEYEISFDWIY 91 N Y++ D + Sbjct: 61 NAYQVPLDELV 71 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+ G + + G+P STLS E G P ++ + + LD + Sbjct: 11 AVGPRLRALRRRSGATLTALSETTGIPVSTLSRLESGHRKPGLELLLPLANAYQVPLDEL 70 Query: 173 Y----FGDEVIVPKSIKR 186 GD + P+ I R Sbjct: 71 VGAPASGDPRVHPRPITR 88 >gi|315266122|gb|ADT92975.1| putative phage repressor [Shewanella baltica OS678] Length = 240 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 36/99 (36%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + T + Y K +G RI++ RK TQK + AV +E + L Sbjct: 1 MSTKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFAL 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + W+ +G+V + + D + + L Sbjct: 61 AKSLKCDLSWLLNGQVAVKPESNAEWAGGFDLWDNDSPL 99 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 T K +G R++ RK+ G++Q G L+G+ ++ +E+ T P+ + Sbjct: 1 MSTKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFAL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKS 183 + K L W+ G + P+S Sbjct: 61 AKSLKCDLSWLLNGQVAVKPES 82 >gi|34558590|gb|AAQ75063.1| putative CI-like repressor [Lactobacillus phage JCL1032] Length = 120 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 36/66 (54%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G+R+ +R++ ++ E+A + ++ + +E G+ ++ + L + +++S D+ Sbjct: 3 KALGSRLTQLRESLGLSKAEVARRLHVGNTSYSNWEYGLREPNVDMIVTLADFFDVSTDY 62 Query: 90 IYDGEV 95 + + Sbjct: 63 LLGRDS 68 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G+RL +R+ G+S+ E + L + N++ SN+E G P + + D++ Sbjct: 4 ALGSRLTQLRESLGLSKAEVARRLHVGNTSYSNWEYGLREPNVDMIVTLADFFDVSTDYL 63 Query: 173 YFGD 176 D Sbjct: 64 LGRD 67 >gi|290962183|ref|YP_003493365.1| regulatory protein [Streptomyces scabiei 87.22] gi|260651709|emb|CBG74834.1| putative regulatory protein [Streptomyces scabiei 87.22] Length = 198 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 31/84 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + VG R++ IRK T ++ S ++ E+G+ S+ L + ++ Sbjct: 11 TDEVLAGVGPRLRRIRKEREATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQ 70 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKR 108 + D + + +R Sbjct: 71 VPLDELIGEPPVGDPRVRSKPIRR 94 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+ IRK++ + + G+ STLS E G P ++ I + + LD + Sbjct: 22 LRRIRKEREATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDELIGEPP 81 Query: 175 -GDEVIVPKSIKR 186 GD + K I+R Sbjct: 82 VGDPRVRSKPIRR 94 >gi|257438888|ref|ZP_05614643.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198703|gb|EEU96987.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 99 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R K+ G RI+D+RK TQ++++I N + + E G SI L + Sbjct: 1 MRFDAKEFGGRIRDLRKKKGITQEQLSIMLNVSANHLAKVETGSRCCSIELLQDLSSCLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 + D++ +G+ + Sbjct: 61 VRTDYLLNGDAPHNNHLRER 80 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 R D G R++ +RK KG++Q + +L + + L+ E G I+ + + Sbjct: 1 MRFDAKEFGGRIRDLRKKKGITQEQLSIMLNVSANHLAKVETGSRCCSIELLQDLSSCLN 60 Query: 167 KHLDWIYFGD 176 D++ GD Sbjct: 61 VRTDYLLNGD 70 >gi|224541161|ref|ZP_03681700.1| hypothetical protein CATMIT_00314 [Catenibacterium mitsuokai DSM 15897] gi|224525912|gb|EEF95017.1| hypothetical protein CATMIT_00314 [Catenibacterium mitsuokai DSM 15897] Length = 319 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 36/78 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I + RK N +Q+E+A AV+ +E+ ++ L + + ++ D++ Sbjct: 3 LADKIIEERKKNGWSQEELASKLGVSRQAVSKWESSGSIPDLQRILQMSELFGVTTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 E+ + R + K + Sbjct: 63 KDEIEEERQNEYVETKTI 80 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-- 175 + RK G SQ E LG+ +S +E +IP+++ ++ ++ D++ Sbjct: 7 IIEERKKNGWSQEELASKLGVSRQAVSKWESSGSIPDLQRILQMSELFGVTTDYLLKDEI 66 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK--DKKSS 203 +E + ++ S +++ + D KS Sbjct: 67 EEERQNEYVETKTIKVSMEEANRYLDMKSR 96 >gi|29028568|ref|NP_803258.1| cI-like repressor [Staphylococcus phage 11] gi|57651248|ref|YP_185213.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|66395526|ref|YP_239894.1| ORF018 [Staphylococcus phage 42E] gi|88195767|ref|YP_500576.1| phage repressor protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|18920492|gb|AAL82233.1| cI-like repressor [Staphylococcus phage 11] gi|57285434|gb|AAW37528.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|62636019|gb|AAX91130.1| ORF018 [Staphylococcus phage 42E] gi|87203325|gb|ABD31135.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|315193399|gb|EFU23796.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus CGS00] Length = 239 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ K +G +I+ R N TQ ++ N ++ ++ +E G + + + Sbjct: 2 DKKELAKFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHIL 61 Query: 84 EISFDWIYDGEVIDRRYED 102 IS D ++ + Sbjct: 62 NISIDDLFPTRNNKKNDIT 80 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +++ R ++Q + G+ L +T+SNYE G P+ +I + +D + Sbjct: 9 FIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDL 68 Query: 173 Y 173 + Sbjct: 69 F 69 >gi|229070989|ref|ZP_04204216.1| transcriptional regulator, XRE [Bacillus cereus F65185] gi|228712171|gb|EEL64119.1| transcriptional regulator, XRE [Bacillus cereus F65185] Length = 108 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 8/109 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G I+D+RK TQKE+A+ ES + ++E + + + + +S D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELALSLKLSESTIGMYERNERQPDYNTLIRIADYFNVSTD 60 Query: 89 WIYDGEVIDRRYEDVT------NKKRLDPYAIGARLKSIRKDKGMSQIE 131 ++ + + + N +L P LK R + Q E Sbjct: 61 FLLGRDFNVKEGRNNKELDQWLNDIKLAPSQKREELK--RFWNFIMQEE 107 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +RK KG++Q E L + ST+ YE+ P+ +I D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELALSLKLSESTIGMYERNERQPDYNTLIRIADYFNVSTD 60 Query: 171 WIYFGD 176 ++ D Sbjct: 61 FLLGRD 66 >gi|219670548|ref|YP_002460983.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540808|gb|ACL22547.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 140 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 1/95 (1%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNE 82 + K +GTRIK +RK + +++ + + + ENG S + + + Sbjct: 2 NAESFKKALGTRIKQLRKNGKLSLADLSRHLPSISRANLGRIENGEVMPSAIFIYEISSF 61 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + +S DW+ G +RL Sbjct: 62 FNVSADWLLTGNTPALPIYLNAEHERLIEMFNLMN 96 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K +RK+ +S + + L + + L E G +P +I DW Sbjct: 9 ALGTRIKQLRKNGKLSLADLSRHLPSISRANLGRIENGEVMPSAIFIYEISSFFNVSADW 68 Query: 172 IYFGDEVIVP 181 + G+ +P Sbjct: 69 LLTGNTPALP 78 >gi|95929663|ref|ZP_01312405.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95134360|gb|EAT16017.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 176 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+GT+I+++RK T + +A + ++ EN + I L +++ + Sbjct: 4 DIGTKIRELRKNRGITLQYVANQTGFSAALISQIENNNITPPIATLARLSEFFDVKIGYF 63 Query: 91 YDGEVIDRRY 100 ++ E + R Sbjct: 64 FEDEALARYE 73 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y IG +++ +RK++G++ G + +S E P I ++ + + + Sbjct: 3 YDIGTKIRELRKNRGITLQYVANQTGFSAALISQIENNNITPPIATLARLSEFFDVKIGY 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 +F DE + + RA ++ KS Sbjct: 63 -FFEDEALARYEVVRADKGYTTNNPHFIYKS 92 >gi|239630941|ref|ZP_04673972.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065263|ref|YP_003787286.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|239527224|gb|EEQ66225.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437670|gb|ADK17436.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 373 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I RK TQ+ +A +++V+ +E G I L +++S D + Sbjct: 4 NVGAVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDKL 63 Query: 91 YDGEVI----DRRYEDVTNKKRLDPYAIGARLKSIR 122 + + R + K+ + A LKSIR Sbjct: 64 MAYDAQLSSTEIRRIYTSMKQAFETQTGKAVLKSIR 99 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A + + RK KG++Q +G+ +++S +E G++ P+I + +D + Sbjct: 7 AVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDKLMAY 66 Query: 176 DEVIVPKSIKR 186 D + I+R Sbjct: 67 DAQLSSTEIRR 77 >gi|22537855|ref|NP_688706.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76787796|ref|YP_330325.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76798410|ref|ZP_00780651.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77405968|ref|ZP_00783047.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] gi|77409450|ref|ZP_00786144.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|22534750|gb|AAN00579.1|AE014269_23 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76562853|gb|ABA45437.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76586242|gb|EAO62759.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77171942|gb|EAO75117.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77175420|gb|EAO78210.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] Length = 197 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I RK +Q+E+A +++ +EN I L L +++S D + Sbjct: 2 EIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++SN+E +T P+I + Q+ + LD Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTK 86 >gi|260426660|ref|ZP_05780639.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421152|gb|EEX14403.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 215 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 3/111 (2%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWK---DVGTRIKDIRKANNKTQKEMAIGANQL 57 M P+ T ++ + + D+G R++++RK + T ++ A A Sbjct: 1 MLRGPYSMTMMRDPKTLIRLARETGEDAMAEPLDLGARVRELRKERDWTLEQAAKQAGLA 60 Query: 58 ESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 S ++ ENG S + L I ++ D+ + + + Sbjct: 61 RSTLSKIENGQMSPTYDALKKLAVGLGIGVPQLFTPPKKDQVSGRMVHTRD 111 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK++ + + K G+ STLS E G+ P +K+ + ++ Sbjct: 37 ARVRELRKERDWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKKLAVGLGIGVPQLFT 95 >gi|167908369|ref|ZP_02495574.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] Length = 202 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 + T +P VG +I+ +R T +++ A +S ++ E + +I Sbjct: 8 RRTTAPASPATGATPPRVGEQIQRLRNERKFTLDDLSRAAGVSKSMLSEIERDKANPTIA 67 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 A L N IS D ++ Sbjct: 68 VAWRLTNALGISLDELFAQPKAPETIRVDGPH 99 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ + + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 27 EQIQRLRNERKFTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFA- 85 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 86 -QPKAPETIR 94 >gi|255975095|ref|ZP_05425681.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|307285607|ref|ZP_07565746.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|255967967|gb|EET98589.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|306502831|gb|EFM72096.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 183 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|257065249|ref|YP_003144921.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792902|gb|ACV23572.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 194 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG IKD+R + +Q+E+A V+ +EN ++ + + S D + Sbjct: 2 EVGKTIKDLRTRSGMSQEELAKNVFVSRQTVSSWENEKSYPDVQSLALIAELFNTSIDAL 61 Query: 91 YDGEVIDRR 99 G++ Sbjct: 62 VKGDLAMID 70 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 40/83 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +K +R GMSQ E K + + T+S++E ++ P+++ I ++ +D Sbjct: 1 MEVGKTIKDLRTRSGMSQEELAKNVFVSRQTVSSWENEKSYPDVQSLALIAELFNTSIDA 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD ++ I A+ + Sbjct: 61 LVKGDLAMIDLRIAEAEVKTLKR 83 >gi|229082960|ref|ZP_04215381.1| hypothetical protein bcere0023_55490 [Bacillus cereus Rock4-2] gi|228700360|gb|EEL52925.1| hypothetical protein bcere0023_55490 [Bacillus cereus Rock4-2] Length = 144 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G+++K R++ + +Q+++A AV +E+ I + L + YE++ D + Sbjct: 5 KLGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVTIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 G R D + Sbjct: 65 IKGSGDAREDLDKKDNDEC 83 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G++LK R+ K SQ + + +G+ + +E ++ P+I + + + Sbjct: 1 MNNMKLGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 +D + G K+ Sbjct: 61 IDELIKGSGDAREDLDKKDNDE 82 >gi|29376999|ref|NP_816153.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227554043|ref|ZP_03984090.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256616940|ref|ZP_05473786.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256763188|ref|ZP_05503768.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256853861|ref|ZP_05559226.1| transcriptional regulator [Enterococcus faecalis T8] gi|256963668|ref|ZP_05567839.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257079726|ref|ZP_05574087.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257087532|ref|ZP_05581893.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257090691|ref|ZP_05585052.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257419956|ref|ZP_05596950.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|294779679|ref|ZP_06745069.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|307270739|ref|ZP_07552030.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307271614|ref|ZP_07552885.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307276796|ref|ZP_07557907.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290439|ref|ZP_07570354.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312905231|ref|ZP_07764351.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|29344465|gb|AAO82223.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227176791|gb|EEI57763.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256596467|gb|EEU15643.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256684439|gb|EEU24134.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256710804|gb|EEU25847.1| transcriptional regulator [Enterococcus faecalis T8] gi|256954164|gb|EEU70796.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256987756|gb|EEU75058.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256995562|gb|EEU82864.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256999503|gb|EEU86023.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257161784|gb|EEU91744.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|294453233|gb|EFG21645.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|306498632|gb|EFM68134.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306506433|gb|EFM75592.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306511492|gb|EFM80491.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306513049|gb|EFM81690.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310631468|gb|EFQ14751.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315025312|gb|EFT37244.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315030397|gb|EFT42329.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315161820|gb|EFU05837.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315168539|gb|EFU12556.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315574702|gb|EFU86893.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315579274|gb|EFU91465.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315580922|gb|EFU93113.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|329578095|gb|EGG59508.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 183 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|227508343|ref|ZP_03938392.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192161|gb|EEI72228.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 209 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 30/77 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R TQ +A + V+ +ENG + + L + I D + Sbjct: 3 NLANKIKQYRTTKGLTQAGLAEKLSISRKTVSSWENGRSFPNFSTIIQLSKVFGIKVDDL 62 Query: 91 YDGEVIDRRYEDVTNKK 107 + + + +K+ Sbjct: 63 LKNDNKVIEHFNKQDKQ 79 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 8/92 (8%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A ++K R KG++Q + L + T+S++E GR+ P ++ +V Sbjct: 1 MDNLA--NKIKQYRTTKGLTQAGLAEKLSISRKTVSSWENGRSFPNFSTIIQLSKVFGIK 58 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 +D + D ++ N+ K+ K+DK Sbjct: 59 VDDLLKNDNKVIEHF------NKQDKQVKRDK 84 >gi|21284353|ref|NP_647441.1| hypothetical protein MW2624 [Staphylococcus aureus subsp. aureus MW2] gi|49487483|ref|YP_044704.1| hypothetical protein SAS2588 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651100|ref|YP_187518.1| transcriptional regulator, putative [Staphylococcus aureus subsp. aureus COL] gi|87161562|ref|YP_495274.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196661|ref|YP_501492.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222818|ref|YP_001333640.1| hypothetical protein NWMN_2606 [Staphylococcus aureus subsp. aureus str. Newman] gi|258451376|ref|ZP_05699407.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262050429|ref|ZP_06023259.1| hypothetical protein SAD30_1606 [Staphylococcus aureus D30] gi|262053275|ref|ZP_06025407.1| hypothetical protein SA930_0618 [Staphylococcus aureus 930918-3] gi|282920710|ref|ZP_06328429.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|284023029|ref|ZP_06377427.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294849819|ref|ZP_06790559.1| hypothetical protein SKAG_01908 [Staphylococcus aureus A9754] gi|297209460|ref|ZP_06925858.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911484|ref|ZP_07128933.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21205797|dbj|BAB96489.1| MW2624 [Staphylococcus aureus subsp. aureus MW2] gi|49245926|emb|CAG44407.1| putative membrane protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285286|gb|AAW37380.1| transcriptional regulator, putative [Staphylococcus aureus subsp. aureus COL] gi|87127536|gb|ABD22050.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87204219|gb|ABD32029.1| Helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375618|dbj|BAF68878.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|257860906|gb|EEV83723.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259158829|gb|EEW43941.1| hypothetical protein SA930_0618 [Staphylococcus aureus 930918-3] gi|259161476|gb|EEW46088.1| hypothetical protein SAD30_1606 [Staphylococcus aureus D30] gi|282594118|gb|EFB99106.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|294823367|gb|EFG39796.1| hypothetical protein SKAG_01908 [Staphylococcus aureus A9754] gi|296885921|gb|EFH24856.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887663|gb|EFK82859.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|315197909|gb|EFU28242.1| hypothetical protein CGSSa01_15080 [Staphylococcus aureus subsp. aureus CGS01] gi|320141409|gb|EFW33252.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144391|gb|EFW36156.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329731810|gb|EGG68170.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 189 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A +++ +EN I L + + ++ D + Sbjct: 2 NLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D+ ++ L+ + + Sbjct: 62 VKG--TIPFVPDIKAQRSLNLWTYVMLI 87 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + L + ++SN+E +++P+I + ++ LD Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + G VP + N Sbjct: 61 LVKGTIPFVPDIKAQRSLN 79 >gi|315144810|gb|EFT88826.1| helix-turn-helix protein [Enterococcus faecalis TX2141] Length = 183 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|229119513|ref|ZP_04248807.1| transcriptional regulator [Bacillus cereus Rock1-3] gi|228663945|gb|EEL19492.1| transcriptional regulator [Bacillus cereus Rock1-3] Length = 196 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 40/80 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R +G SQ + + + + T+SN+E R+ P+I + + LD Sbjct: 9 MNLSKQIKKYRDREGFSQEDLAEKIYVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDD 68 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + GD ++ ++++ K N+ Sbjct: 69 LVKGDMEMMKNNLQQVKFNK 88 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R +Q+++A ++ +EN I L L +++S D + Sbjct: 10 NLSKQIKKYRDREGFSQEDLAEKIYVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDDL 69 Query: 91 YDGEVIDRRYEDVT 104 G++ + Sbjct: 70 VKGDMEMMKNNLQQ 83 >gi|184155136|ref|YP_001843476.1| hypothetical protein LAF_0660 [Lactobacillus fermentum IFO 3956] gi|183226480|dbj|BAG26996.1| hypothetical phage protein [Lactobacillus fermentum IFO 3956] Length = 104 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI +RK+ + +Q ++A N S + ++E ++ L + + +S D++ Sbjct: 2 NIGERIAQLRKSRSMSQFQLAKTLNIATSTLGMYETNKRKPNMEMLEKLADFFGVSVDFL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 D G L Sbjct: 62 LGRPEKDDLKTADLADDDTIFTYKGQPL 89 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+ +RK + MSQ + K L + STL YE + P ++ K+ +D+ Sbjct: 1 MNIGERIAQLRKSRSMSQFQLAKTLNIATSTLGMYETNKRKPNMEMLEKLADFFGVSVDF 60 Query: 172 IYFGDE 177 + E Sbjct: 61 LLGRPE 66 >gi|167755998|ref|ZP_02428125.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402] gi|167703990|gb|EDS18569.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402] Length = 291 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +RK +Q+++A N AV+ +E+ + + L + +E + D + Sbjct: 3 LSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTIDDLL 62 Query: 92 DGE 94 + Sbjct: 63 KND 65 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 38/86 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ L+++RK KG SQ + + L + +S +E PE++ + + + +D Sbjct: 1 MSLSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTIDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + D + K+A S +K Sbjct: 61 LLKNDLTQHNPTAKQAYDKHYSLIAK 86 >gi|66395312|ref|YP_239602.1| ORF019 [Staphylococcus phage 69] gi|66396425|ref|YP_240780.1| ORF019 [Staphylococcus phage 92] gi|151221206|ref|YP_001332028.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257433183|ref|ZP_05609541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|296277282|ref|ZP_06859789.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus MR1] gi|62635663|gb|AAX90774.1| ORF019 [Staphylococcus phage 69] gi|62636839|gb|AAX91950.1| ORF019 [Staphylococcus phage 92] gi|104641720|gb|ABF73098.1| cI-like repressor [Staphylococcus aureus phage phiNM2] gi|150374006|dbj|BAF67266.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257281276|gb|EEV11413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] Length = 239 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ K +G +I+ R N TQ ++ N ++ ++ +E G + + + Sbjct: 2 DKKELAKFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHIL 61 Query: 84 EISFDWIYDGEVIDRRYED 102 IS D ++ + Sbjct: 62 NISIDDLFPTRNNKKNDIT 80 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +++ R ++Q + G+ L +T+SNYE G P+ +I + +D + Sbjct: 9 FIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDL 68 Query: 173 Y 173 + Sbjct: 69 F 69 >gi|254520499|ref|ZP_05132555.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226914248|gb|EEH99449.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 111 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +K +G RI+ R N TQ+++A + S + E G + S+ + + ++ Sbjct: 2 IYKLLGNRIRQERLKLNLTQEQLAEKVDLSTSYIGQIERGERNISLDTLVVICKSLGVTI 61 Query: 88 DWIYDGEVIDRRYEDVTNKKRL 109 D++ + +L Sbjct: 62 DYLLQDSINIEEDIVYNQLYQL 83 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 33/92 (35%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G R++ R ++Q + + + + S + E+G + I + Sbjct: 1 MIYKLLGNRIRQERLKLNLTQEQLAEKVDLSTSYIGQIERGERNISLDTLVVICKSLGVT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 +D++ I + S +S +K Sbjct: 61 IDYLLQDSINIEEDIVYNQLYQLISSRSLNEK 92 >gi|160894211|ref|ZP_02074989.1| hypothetical protein CLOL250_01765 [Clostridium sp. L2-50] gi|156864244|gb|EDO57675.1| hypothetical protein CLOL250_01765 [Clostridium sp. L2-50] Length = 203 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK R+ +Q+++A ++ +EN + + L ++IS D + Sbjct: 10 ELGKQIKKHRQEVQLSQEKLADRVYVSRQTISNWENDKSYPDVNSLVLLSEIFQISLDNL 69 Query: 91 YDGEVIDRRYEDVTNKK-RLDPYAIGARL 118 G++ + + +++ Y + Sbjct: 70 IKGDIEVMKDVIQKEEIVKMNRYGKIYTI 98 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 44/86 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K R++ +SQ + + + T+SN+E ++ P++ + ++ + LD Sbjct: 9 MELGKQIKKHRQEVQLSQEKLADRVYVSRQTISNWENDKSYPDVNSLVLLSEIFQISLDN 68 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD ++ I++ + + ++ K Sbjct: 69 LIKGDIEVMKDVIQKEEIVKMNRYGK 94 >gi|160935724|ref|ZP_02083099.1| hypothetical protein CLOBOL_00614 [Clostridium bolteae ATCC BAA-613] gi|158441468|gb|EDP19178.1| hypothetical protein CLOBOL_00614 [Clostridium bolteae ATCC BAA-613] Length = 194 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I +R TQK +A N + ++ +E G + L + ++ + I Sbjct: 5 KVGNLIYTLRTEKGMTQKALANAMNISDRTISKWERGAGCPDVSLLRELSDILGVNIEKI 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 G++ + +D N KR+ Y Sbjct: 65 LLGDL-EPNKKDGGNMKRIKFYVCPVC 90 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 38/75 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G + ++R +KGM+Q + + + T+S +E+G P++ R++ + + Sbjct: 1 MDCSKVGNLIYTLRTEKGMTQKALANAMNISDRTISKWERGAGCPDVSLLRELSDILGVN 60 Query: 169 LDWIYFGDEVIVPKS 183 ++ I GD K Sbjct: 61 IEKILLGDLEPNKKD 75 >gi|315926028|ref|ZP_07922230.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620668|gb|EFV00647.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 323 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK +Q+E+A +++ +E + L L + +S D++ Sbjct: 3 LADKIIYLRKRAEWSQEELAEQMGVSRQSISKWEGAQSIPDMNRLLKLSQIFGVSTDFLL 62 Query: 92 DGE 94 E Sbjct: 63 KDE 65 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD- 176 + +RK SQ E + +G+ ++S +E ++IP++ K+ Q+ D++ + Sbjct: 7 IIYLRKRAEWSQEELAEQMGVSRQSISKWEGAQSIPDMNRLLKLSQIFGVSTDFLLKDEL 66 Query: 177 --EVIVPKSIKRA 187 E + P A Sbjct: 67 GPEQLTPSVETDA 79 >gi|257081927|ref|ZP_05576288.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256989957|gb|EEU77259.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] Length = 183 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|295107152|emb|CBL04695.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 195 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G++IK R +Q ++A V+ +EN + L L ++++ D + Sbjct: 2 ELGSQIKRHRTERGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 G+V + + +++ A Sbjct: 62 IKGDVEAMKEAIENDYRKMIYLA 84 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 40/75 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G+++K R ++G+SQ + + + T+S++E +T P+++ + + +D Sbjct: 1 MELGSQIKRHRTERGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDE 60 Query: 172 IYFGDEVIVPKSIKR 186 + GD + ++I+ Sbjct: 61 LIKGDVEAMKEAIEN 75 >gi|229825438|ref|ZP_04451507.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC 49176] gi|229790001|gb|EEP26115.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC 49176] Length = 116 Score = 74.6 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K +R+ TQ E+A +A++ +E+ S + L E++++ D++ Sbjct: 2 NFHLRLKQLRQKKGLTQGELANILGLKPTAISNYESNRNEPSFDKLIALSKEFDVTCDYL 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R+ KG++Q E +LG+ + +SNYE R P + + D+ Sbjct: 1 MNFHLRLKQLRQKKGLTQGELANILGLKPTAISNYESNRNEPSFDKLIALSKEFDVTCDY 60 Query: 172 IYFGDEVIVP 181 + + +P Sbjct: 61 LLGISDSALP 70 >gi|257084469|ref|ZP_05578830.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256992499|gb|EEU79801.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|315172481|gb|EFU16498.1| helix-turn-helix protein [Enterococcus faecalis TX1346] Length = 183 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|228993099|ref|ZP_04153022.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] gi|228999148|ref|ZP_04158730.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|229006696|ref|ZP_04164330.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228754557|gb|EEM03968.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228760765|gb|EEM09729.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|228766747|gb|EEM15387.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] Length = 181 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 37/100 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I++IR+ T ++ G + ++ EN S SI + + ++ Sbjct: 2 NIGSAIREIRQRRGVTIAQICEGTGLSKGFMSQVENNKTSPSISTLETISKFLNVPLPYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + +K R++ + + G+ Sbjct: 62 LLEQKDHMKIVKKEERKYSVYGKDEQRIEHVAEQGGLRLS 101 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ ++ IR+ +G++ + + G+ +S E +T P I I + L + Sbjct: 1 MNIGSAIREIRQRRGVTIAQICEGTGLSKGFMSQVENNKTSPSISTLETISKFLNVPLPY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K + Sbjct: 61 LLLEQKDHMKIVKKEER 77 >gi|166153466|ref|YP_001653980.1| transcriptional regulator [Bacillus thuringiensis] gi|165875305|gb|ABY68462.1| putative transcriptional regulator [Bacillus thuringiensis] Length = 186 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 37/75 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ RK +N +Q+++A + +++ +EN I L + + +S D + Sbjct: 2 NIGRQIQYFRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDL 61 Query: 91 YDGEVIDRRYEDVTN 105 G+V + E + Sbjct: 62 VKGDVQIMKEELQKS 76 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 38/76 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ RK MSQ + + + + ++SN+E R P+I + + LD Sbjct: 1 MNIGRQIQYFRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDD 60 Query: 172 IYFGDEVIVPKSIKRA 187 + GD I+ + ++++ Sbjct: 61 LVKGDVQIMKEELQKS 76 >gi|153955543|ref|YP_001396308.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855938|ref|YP_002473060.1| hypothetical protein CKR_2595 [Clostridium kluyveri NBRC 12016] gi|146348401|gb|EDK34937.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569662|dbj|BAH07646.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 109 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 43/105 (40%), Gaps = 12/105 (11%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI++ R TQ+++A + S V E G S ++ + + ++ D Sbjct: 3 YIALGKRIREERLKLRLTQEKLAEDVDVSSSYVGQIERGEKSVTLDTLIRITKRLGVTVD 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 ++ ++ N +D ++K + + + + Q + Sbjct: 63 YLLK------DSVNMENDNFID------QIKQLLQGRNIKQKQMA 95 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 38/95 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ A+G R++ R ++Q + + + + +S + E+G + +I + Sbjct: 1 MNYIALGKRIREERLKLRLTQEKLAEDVDVSSSYVGQIERGEKSVTLDTLIRITKRLGVT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 +D++ + + ++ K K+ + Sbjct: 61 VDYLLKDSVNMENDNFIDQIKQLLQGRNIKQKQMA 95 >gi|325686748|gb|EGD28774.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 168 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 37/82 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ ++RK +Q+++A N +++ +E+G + + L ++++ D++ Sbjct: 5 DKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLE 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIG 115 + + V ++ + Y Sbjct: 65 DSDKPEIKPVLSEDEKNRYYKE 86 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK+KG SQ + + + + ++S +E G+ +PE++ ++ ++ + D+ Sbjct: 1 MKLNDKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + E IK + K+ KS Sbjct: 61 LLL--EDSDKPEIKPVLSEDEKNRYYKEVKS 89 >gi|311067740|ref|YP_003972663.1| Phage PBSX transcriptional regulator [Bacillus atrophaeus 1942] gi|310868257|gb|ADP31732.1| Phage PBSX transcriptional regulator [Bacillus atrophaeus 1942] Length = 113 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R TQ+E+A + + +ENG L + ++++ D++ Sbjct: 2 IGGRLKSLRGKK--TQEEIANHIGVSRARYSHYENGRSEPDYETLQKLADYFQVTTDYLL 59 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 G+ + ++ Y Sbjct: 60 TGKEKKSDDDIFSDPDLQIAYRDMR 84 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LKS+R K +Q E +G+ + S+YE GR+ P+ + +K+ + D++ G E Sbjct: 6 LKSLRGKK--TQEEIANHIGVSRARYSHYENGRSEPDYETLQKLADYFQVTTDYLLTGKE 63 Query: 178 VIVPKSI 184 I Sbjct: 64 KKSDDDI 70 >gi|282866082|ref|ZP_06275130.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559121|gb|EFB64675.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 206 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 9/149 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V R++D+R+ T + A A + ++ E G S+ L L Y + + Sbjct: 18 VAPRLRDLRRNRGLTLETAARRAELSPAHLSRLETGRRQPSLPMLLGLARIYGTTVSELL 77 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 GE+ R V R+ G + + +P+ T S E R Sbjct: 78 -GEMPPERDAIVRGGPLGAGAEADGW--RYRQAGGSGRAMQALRVHVPHGTES--ELVRV 132 Query: 152 IPEIKPAR----KIKQVTKKHLDWIYFGD 176 P + +++ + L + GD Sbjct: 133 HPGEEWLYVLEGRLRVALGESLHDLEAGD 161 >gi|229549329|ref|ZP_04438054.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255972038|ref|ZP_05422624.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256956771|ref|ZP_05560942.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|300860468|ref|ZP_07106555.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|312953579|ref|ZP_07772416.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|229305566|gb|EEN71562.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255963056|gb|EET95532.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256947267|gb|EEU63899.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|300849507|gb|EFK77257.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|310628417|gb|EFQ11700.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|315035920|gb|EFT47852.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315148523|gb|EFT92539.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315151846|gb|EFT95862.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315159274|gb|EFU03291.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315170200|gb|EFU14217.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|323481485|gb|ADX80924.1| helix-turn-helix family protein [Enterococcus faecalis 62] gi|327535779|gb|AEA94613.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 183 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|160897719|ref|YP_001563301.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363303|gb|ABX34916.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 214 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 55/143 (38%), Gaps = 5/143 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+++ RK +Q+ A ++ + +E G + Y + + + ++ Sbjct: 24 EFSQRLREERKRLGLSQEAFASLGGVSKNTQSNYETGANLPDVGYLNTI-RGFGVDSGYV 82 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 G + + + + A ARL RK ++ + G+ L +E+G Sbjct: 83 LTG-IRTFDPSAIEHAQPAATLA--ARLVQERKRLELTVGQLAAKSGVDRLALLKFEEGE 139 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 P+ K +++ V + ++ Sbjct: 140 FAPDAKALQQLHAV-GVDVGYVL 161 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 K++D ++ RL+ RK G+SQ F L G+ +T SNYE G +P++ I Sbjct: 16 NRFTKKMDEFS--QRLREERKRLGLSQEAFASLGGVSKNTQSNYETGANLPDVGYLNTI- 72 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAK 188 + ++ G P +I+ A+ Sbjct: 73 RGFGVDSGYVLTGIRTFDPSAIEHAQ 98 Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Q + R+ RK T ++A + A+ FE G + + L + Sbjct: 95 EHAQPAATLAARLVQERKRLELTVGQLAAKSGVDRLALLKFEEGEFAPDAKALQQL-HAV 153 Query: 84 EISFDWIY 91 + ++ Sbjct: 154 GVDVGYVL 161 >gi|159184228|ref|NP_353276.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139556|gb|AAK86061.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 193 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 32/90 (35%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 ++ E R + +G RIK +R + T + +A + + ++ E G S + + Sbjct: 1 MMETEDRILERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLARI 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 +S + ++L Sbjct: 61 CAALGLSLSGFFAENEEAVSPLVKKRDQQL 90 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + + R+ +IG R+K +R + G++ G+ + +S E+G P +I Sbjct: 1 MMETEDRILERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLARI 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGN 190 L + +E V +K+ Sbjct: 61 CAALGLSLSGFFAENEEAVSPLVKKRDQQ 89 >gi|332983091|ref|YP_004464532.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700769|gb|AEE97710.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 124 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK +N TQ+E ++S V+L+E+ + + + +S D++ Sbjct: 4 LGQRIKQLRKEHNMTQEEFGKLFGIVKSTVSLYEHDKSIPDDSIKKMIADYFNVSIDYLM 63 Query: 92 DGEVIDRRYEDVTNKK 107 I + + K Sbjct: 64 GRTDIRYPAKKTIDDK 79 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R+K +RK+ M+Q EFGKL G+ ST+S YE ++IP+ + I +D Sbjct: 1 MVTLGQRIKQLRKEHNMTQEEFGKLFGIVKSTVSLYEHDKSIPDDSIKKMIADYFNVSID 60 Query: 171 WIYFGDEVIVP 181 ++ ++ P Sbjct: 61 YLMGRTDIRYP 71 >gi|319745678|gb|EFV97977.1| DNA-binding protein [Streptococcus agalactiae ATCC 13813] Length = 197 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I RK +Q+E+A +++ +EN I L L +++S D + Sbjct: 2 EIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++SN+E +T P+I + Q+ + LD Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTK 86 >gi|283768814|ref|ZP_06341725.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104600|gb|EFC05973.1| DNA-binding protein [Bulleidia extructa W1219] Length = 331 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK N +Q+E+A +V+ +E + L L + +S D++ Sbjct: 3 LADKIITLRKKNGWSQEELADQLEVSRQSVSKWEGAQSIPDMNKILKLSKVFGVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKR 108 E++ E Sbjct: 63 KDEIVIAENETQPETDN 79 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 38/79 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + ++RK G SQ E L + ++S +E ++IP++ K+ +V D++ + Sbjct: 7 IITLRKKNGWSQEELADQLEVSRQSVSKWEGAQSIPDMNKILKLSKVFGVSTDYLLKDEI 66 Query: 178 VIVPKSIKRAKGNQSSKKS 196 VI + N S++ S Sbjct: 67 VIAENETQPETDNHSAEVS 85 >gi|269216832|ref|ZP_06160686.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269129639|gb|EEZ60723.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 200 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+ + R+A+ +Q+++A + AV+ +E S + L Y ++ D + Sbjct: 4 EIAKRLYEYRRASGLSQEQVAAKISVSRQAVSKWECAESSPDTDNLIALAMLYGVTVDEL 63 Query: 91 YDGEVIDRRYEDVT 104 + E Sbjct: 64 LFADPEKTAAETTK 77 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 2/93 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I RL R+ G+SQ + + + +S +E + P+ + + +D Sbjct: 3 IEIAKRLYEYRRASGLSQEQVAAKISVSRQAVSKWECAESSPDTDNLIALAMLYGVTVDE 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + F D + + KG + +++D +N Sbjct: 63 LLFAD--PEKTAAETTKGTIRTNDAEEDAGKTN 93 >gi|212710089|ref|ZP_03318217.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] gi|212687296|gb|EEB46824.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] Length = 94 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG+RIK +RK T E+A N + + +E G+ I + + + ++IS + Sbjct: 14 KIVGSRIKKLRKEYGLTGTEIAAYLNVSQQQFSRYERGINRIDIDSLVMIADFFKISIHY 73 Query: 90 IYDG 93 ++ Sbjct: 74 FFED 77 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +R+K +RK+ G++ E L + S YE+G +I I K + + + Sbjct: 18 SRIKKLRKEYGLTGTEIAAYLNVSQQQFSRYERGINRIDIDSLVMIADFFKISIHYFF 75 >gi|66395390|ref|YP_239683.1| ORF020 [Staphylococcus phage 53] gi|62635740|gb|AAX90851.1| ORF020 [Staphylococcus phage 53] Length = 239 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ K +G +I+ R N TQ ++ N ++ ++ +E G + + + Sbjct: 2 DKKELAKFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHIL 61 Query: 84 EISFDWIYDGEVIDRRYED 102 IS D ++ + Sbjct: 62 NISIDDLFPTRNNKKNDIT 80 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +++ R ++Q + G+ L +T+SNYE G P+ +I + +D + Sbjct: 9 FIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDL 68 Query: 173 Y 173 + Sbjct: 69 F 69 >gi|317500621|ref|ZP_07958840.1| HTH domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316897939|gb|EFV19991.1| HTH domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 151 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 25 IRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + Q D+ G +I+ +R + TQ+E+A N A++ +E + + + Sbjct: 1 MNQKQTDITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFL 60 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + D + + K++ + Y + L Sbjct: 61 FGVHMDDFAKEVITKMETCEKKEKRQFNKYDMAIGL 96 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 8/96 (8%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N+K+ D G +++ +R GM+Q E L + LSN+E+ P++ +KI + Sbjct: 2 NQKQTD-ITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFL 60 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 H+D + I + + + +K + +K Sbjct: 61 FGVHMDDF-------AKEVITKMETCEKKEKRQFNK 89 >gi|303238807|ref|ZP_07325339.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593686|gb|EFL63402.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 194 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +RK TQK++A N + ++ +E G+ + L ++ + I Sbjct: 5 KMGNLICSLRKEKGMTQKQLADTMNISDKTISKWERGLGCPDVSLLPELSALLGVNIEKI 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 G++ Y N KR+ Y Sbjct: 65 LSGDLNPNDYVGG-NMKRIQFYVCAEC 90 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 38/68 (55%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G + S+RK+KGM+Q + + + + T+S +E+G P++ ++ + + Sbjct: 1 MDCSKMGNLICSLRKEKGMTQKQLADTMNISDKTISKWERGLGCPDVSLLPELSALLGVN 60 Query: 169 LDWIYFGD 176 ++ I GD Sbjct: 61 IEKILSGD 68 >gi|296452101|ref|ZP_06893812.1| transcriptional regulator [Clostridium difficile NAP08] gi|296877457|ref|ZP_06901490.1| transcriptional regulator [Clostridium difficile NAP07] gi|296259051|gb|EFH05935.1| transcriptional regulator [Clostridium difficile NAP08] gi|296431469|gb|EFH17283.1| transcriptional regulator [Clostridium difficile NAP07] Length = 144 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +RK + TQ+E+A N ++ +E+G I + L Y + D + Sbjct: 5 INENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDLV 64 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K Sbjct: 65 NHSEEKTGIIVPPKGKFF 82 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LKS+RK +Q E + L + +++ +E G +IP+I K+ ++ LD Sbjct: 3 NMINENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDD 62 Query: 172 IYFGDEV 178 + E Sbjct: 63 LVNHSEE 69 >gi|323487601|ref|ZP_08092891.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum WAL-14163] gi|157816226|gb|ABV82119.1| HTH domain protein [Streptococcus parasanguinis] gi|198387264|gb|ACH87089.1| helix-turn-helix XRE-family-like protein [Escherichia coli] gi|323399100|gb|EGA91508.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum WAL-14163] Length = 151 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 25 IRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + Q D+ G +I+ +R + TQ+E+A N A++ +E + + + Sbjct: 1 MNQKQTDITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFL 60 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + D + + K++ + Y + L Sbjct: 61 FGVHMDDFAKEVITKMETCEKKEKRQFNKYDMAIGL 96 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 8/96 (8%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N+K+ D G +++ +R GM+Q E L + LSN+E+ P++ +KI + Sbjct: 2 NQKQTD-ITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFL 60 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 H+D + I + + + +K + +K Sbjct: 61 FGVHMDDF-------AKEVITKMETCEKKEKRQFNK 89 >gi|251797962|ref|YP_003012693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545588|gb|ACT02607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 187 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 4/89 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI+ IRK +TQ E++ +S ++ ENG ++ + + + + + Sbjct: 2 ELGKRIRLIRKEQKRTQDEVSAACGFTKSMLSKIENGSTMPAVATLMKIASALGVKVSDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + + D +K Sbjct: 62 LEPSPKSGTVYINAS----DYQEPEKWIK 86 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 34/89 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ IRK++ +Q E G S LS E G T+P + KI + Sbjct: 1 MELGKRIRLIRKEQKRTQDEVSAACGFTKSMLSKIENGSTMPAVATLMKIASALGVKVSD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + I + + K K DK Sbjct: 61 LLEPSPKSGTVYINASDYQEPEKWIKTDK 89 >gi|217960732|ref|YP_002339296.1| DNA-binding protein [Bacillus cereus AH187] gi|229139935|ref|ZP_04268500.1| hypothetical protein bcere0013_30420 [Bacillus cereus BDRD-ST26] gi|217067257|gb|ACJ81507.1| DNA-binding protein [Bacillus cereus AH187] gi|228643600|gb|EEK99866.1| hypothetical protein bcere0013_30420 [Bacillus cereus BDRD-ST26] Length = 374 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + Sbjct: 65 ISYTPQMEQEDIKD 78 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYTPQMEQEDIKD 78 >gi|332653067|ref|ZP_08418812.1| transcriptional regulator [Ruminococcaceae bacterium D16] gi|332518213|gb|EGJ47816.1| transcriptional regulator [Ruminococcaceae bacterium D16] Length = 285 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R +Q+++A AV+ +E G + L EIS D + Sbjct: 5 IGEIIQRERTRLGLSQEKLAEQVGVSRQAVSKWELGDAVPDTDKLVPLARVLEISVDTLL 64 Query: 92 DGEVIDRRYEDVT 104 D + Sbjct: 65 DHHPQETEETPKE 77 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ R G+SQ + + +G+ +S +E G +P+ + +V + +D Sbjct: 3 MTIGEIIQRERTRLGLSQEKLAEQVGVSRQAVSKWELGDAVPDTDKLVPLARVLEISVDT 62 Query: 172 IYFG---DEVIVPKSIKRAK 188 + + PK I+ K Sbjct: 63 LLDHHPQETEETPKEIEEKK 82 >gi|327441790|dbj|BAK18155.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 194 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G I +RK TQK++A + ++ +E G+ I +L ++I + Sbjct: 3 NEKIGQLIYTLRKGKGMTQKQVADALFLSDRTISKWERGIGCPDITLLPHLAALFDIPIE 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + GE+ ++ N K Y + Sbjct: 63 NLLTGEI-NQNELVGGNMKNSSYYVCPSC 90 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + ++RK KGM+Q + L + + T+S +E+G P+I + + Sbjct: 1 MDNEKIGQLIYTLRKGKGMTQKQVADALFLSDRTISKWERGIGCPDITLLPHLAALFDIP 60 Query: 169 LDWIYFGD 176 ++ + G+ Sbjct: 61 IENLLTGE 68 >gi|237733314|ref|ZP_04563795.1| predicted protein [Mollicutes bacterium D7] gi|229383695|gb|EEO33786.1| predicted protein [Coprobacillus sp. D7] Length = 297 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +RK +Q+++A N AV+ +E+ + + L + +E + D + Sbjct: 9 LSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTIDDLL 68 Query: 92 DGE 94 + Sbjct: 69 KND 71 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 38/86 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ L+++RK KG SQ + + L + +S +E PE++ + + + +D Sbjct: 7 MSLSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTIDD 66 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + D + K+A S +K Sbjct: 67 LLKNDLTQHNPTAKQAYDKHYSLIAK 92 >gi|229545084|ref|ZP_04433809.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|229309976|gb|EEN75963.1| transcriptional regulator [Enterococcus faecalis TX1322] Length = 183 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|146342719|ref|YP_001207767.1| transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195525|emb|CAL79550.1| putative transcriptional regulator with a putative HTH DNA-binding domain [Bradyrhizobium sp. ORS278] Length = 225 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 4/106 (3%) Query: 8 ETSLKSLQEYTLIITPEIRQ--YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE 65 ET + + T + P+ ++G ++ +RK + T E+ A ++ E Sbjct: 16 ETPRQEPELLTGSMAPKEATPTLETEIGAEVRRLRKDLDLTVAELGAAAGISAGMMSKIE 75 Query: 66 NGMCSTSIRYALYLRNEYEISFDWIY--DGEVIDRRYEDVTNKKRL 109 NG S S+ L + ++ +GE D + + R+ Sbjct: 76 NGSISPSLATLSALAKALNVPIARLFRENGEERDCSFVKAGHGVRI 121 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 7/111 (6%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + G + + + IGA ++ +RKD ++ E G G+ +S E Sbjct: 23 ELLTGSMAPKEATPTLETE------IGAEVRRLRKDLDLTVAELGAAAGISAGMMSKIEN 76 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGD-EVIVPKSIKRAKGNQSSKKSKK 198 G P + + + + ++ + E +K G + ++ K Sbjct: 77 GSISPSLATLSALAKALNVPIARLFRENGEERDCSFVKAGHGVRIERRGTK 127 >gi|327405551|ref|YP_004346389.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321059|gb|AEA45551.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 273 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K +RK+ K+Q+E+A S+ + +EN + I + L + Y + D + Sbjct: 2 KLGNNLKLVRKSKKKSQEEVAADLGLTRSSYSGYENQIAEPGIDTLIALSSYYGVPIDAL 61 Query: 91 YDGEVIDRRYED 102 + D Sbjct: 62 LTKDFSTFTDSD 73 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G LK +RK K SQ E LG+ S+ S YE P I + +D Sbjct: 1 MKLGNNLKLVRKSKKKSQEEVAADLGLTRSSYSGYENQIAEPGIDTLIALSSYYGVPIDA 60 Query: 172 IYFGD 176 + D Sbjct: 61 LLTKD 65 >gi|169350968|ref|ZP_02867906.1| hypothetical protein CLOSPI_01745 [Clostridium spiroforme DSM 1552] gi|169292030|gb|EDS74163.1| hypothetical protein CLOSPI_01745 [Clostridium spiroforme DSM 1552] Length = 335 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 42/97 (43%), Gaps = 4/97 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I ++RK N +Q+++A N +++ +E ++ + L + ++ D++ Sbjct: 17 LADKIIELRKKNGWSQEQLAQKLNVTRQSISKWEGEQSVPDLQKIILLSEIFGVTTDYLI 76 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 E+ + + + + +D L ++ + Sbjct: 77 KDEIEEEEFLN----EDVDLKVRKVTLTEAKEFLNIK 109 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 29/58 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + +RK G SQ + + L + ++S +E +++P+++ + ++ D++ Sbjct: 21 IIELRKKNGWSQEQLAQKLNVTRQSISKWEGEQSVPDLQKIILLSEIFGVTTDYLIKD 78 >gi|77412137|ref|ZP_00788460.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] gi|77161797|gb|EAO72785.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] Length = 197 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I RK +Q+E+A +++ +EN I L L +++S D + Sbjct: 2 EIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++SN+E +T P+I + Q+ + LD Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTK 86 >gi|262283609|ref|ZP_06061374.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260666|gb|EEY79367.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 67 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +RK TQ ++A N +S +ENG + SI A + + ++ D++ Sbjct: 1 MSNRLKKLRKEKGLTQADLAKVLNTNQSRYGKYENGKTNLSIENAKKVAKYFGVTIDYLL 60 Query: 92 DGEVI 96 E Sbjct: 61 GSESD 65 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +RK+KG++Q + K+L S YE G+T I+ A+K+ + +D++ Sbjct: 1 MSNRLKKLRKEKGLTQADLAKVLNTNQSRYGKYENGKTNLSIENAKKVAKYFGVTIDYLL 60 Query: 174 FGD 176 + Sbjct: 61 GSE 63 >gi|23455773|ref|NP_695143.1| repressor [Lactobacillus phage phig1e] gi|7450563|pir||T13178 repressor protein - Lactobacillus phage phi-gle gi|1926322|emb|CAA66782.1| repressor [Lactobacillus phage phig1e] gi|1926374|emb|CAA62089.1| gp132 [Lactobacillus phage phig1e] Length = 132 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K++R KTQ E+A + + EN L + YE+S D++ Sbjct: 6 IGNRLKELRNMQGKTQDEVAKSIGISRARYSHLENERNEPDNELLKLLASYYEVSTDYLL 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG RLK +R +G +Q E K +G+ + S+ E R P+ + + + + Sbjct: 1 MASSGIGNRLKELRNMQGKTQDEVAKSIGISRARYSHLENERNEPDNELLKLLASYYEVS 60 Query: 169 LDWIYFGDEVIVPK 182 D++ E Sbjct: 61 TDYLLGNSEKSHKS 74 >gi|319935094|ref|ZP_08009535.1| hypothetical protein HMPREF9488_00366 [Coprobacillus sp. 29_1] gi|319809989|gb|EFW06366.1| hypothetical protein HMPREF9488_00366 [Coprobacillus sp. 29_1] Length = 240 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 39/94 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ +Q+E+A + ++ +E+ + ++ L + Y++S + Sbjct: 3 IGKKLLYLRQQRGLSQEELASALHVSRQTISKWESDLSLPDMKMMLSISQFYDVSVTELL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + E + + + K +K + Sbjct: 63 GVDEKENSQESIEHIYEQTKVVLDKLTKETQKRR 96 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +L +R+ +G+SQ E L + T+S +E ++P++K I Q + Sbjct: 1 MSIGKKLLYLRQQRGLSQEELASALHVSRQTISKWESDLSLPDMKMMLSISQFYDVSVTE 60 Query: 172 IYFGDEVIVPKS 183 + DE + Sbjct: 61 LLGVDEKENSQE 72 >gi|300856338|ref|YP_003781322.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436453|gb|ADK16220.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 128 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ N T + +A N +S ++ +EN + + ++ + L + +S D++ Sbjct: 6 QRMKELRREKNITLENLAKALNTTKSTLSRYENNLRTPNVDFINQLAKYFNVSVDYLLGN 65 Query: 94 EVIDRRYE--DVTNKKRLDPYAIGARLKSI 121 + + T ++++ +++++ Sbjct: 66 SDDKTFPDSKEDTPEEKISKLVKENKIRTL 95 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 R+K +R++K ++ K L STLS YE P + ++ + +D Sbjct: 1 MATFTQRMKELRREKNITLENLAKALNTTKSTLSRYENNLRTPNVDFINQLAKYFNVSVD 60 Query: 171 WIYFG-DEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ D+ P S + + SK K++K Sbjct: 61 YLLGNSDDKTFPDSKEDTPEEKISKLVKENK 91 >gi|294678447|ref|YP_003579062.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477267|gb|ADE86655.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 249 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G R+ RK +Q+ + + ++ E+G S + L + +S DWI Sbjct: 4 EYGLRLSSWRKEQKLSQRALGSVLGVSQGYISDIESGRSEPSRNFLQALTERFGVSADWI 63 Query: 91 YDG 93 G Sbjct: 64 LYG 66 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L S RK++ +SQ G +LG+ +S+ E GR+ P + + + DWI +G Sbjct: 9 LSSWRKEQKLSQRALGSVLGVSQGYISDIESGRSEPSRNFLQALTERFGVSADWILYG 66 >gi|255103226|ref|ZP_05332203.1| hypothetical protein CdifQCD-6_20608 [Clostridium difficile QCD-63q42] Length = 149 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K +R Q E+A N +S + ++EN + + L + ++ D++ Sbjct: 2 FGERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKR 108 + Sbjct: 62 GHTKTNYSVSANIPGMP 78 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK +R G+ Q E ++L + ST+ YE + P + K+ + D++ Sbjct: 1 MFGERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|81427850|ref|YP_394849.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609491|emb|CAI54537.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 251 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK R TQ +A N S V+ +E G + + + + + IS D + Sbjct: 2 NIGHQIKQNRLKREWTQGYLAQLLNVSRSTVSSWEVGRNYPDLETIVAISDLFAISLDKL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + + I Sbjct: 62 LREDSVMTKEVSKRMHMNKYYKIVLTMIAVI 92 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 40/83 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K R + +Q +LL + ST+S++E GR P+++ I + LD Sbjct: 1 MNIGHQIKQNRLKREWTQGYLAQLLNVSRSTVSSWEVGRNYPDLETIVAISDLFAISLDK 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + D V+ + KR N+ K Sbjct: 61 LLREDSVMTKEVSKRMHMNKYYK 83 >gi|84516199|ref|ZP_01003559.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84509895|gb|EAQ06352.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 207 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA + T ++ A A S ++ ENG S + L +IS + Sbjct: 26 DLGARVRELRKARDWTLEQAARQAGLARSTLSKIENGQMSPTYDALKKLAVGLDISVPQL 85 Query: 91 YDGEVIDRRYEDV 103 + + + Sbjct: 86 FTPPAKGQVNGRM 98 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + + + G+ STLS E G+ P +K+ + ++ Sbjct: 29 ARVRELRKARDWTLEQAARQAGLARSTLSKIENGQMSPTYDALKKLAVGLDISVPQLFT 87 >gi|239932677|ref|ZP_04689630.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 181 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ IRK T ++ S ++ E+G+ S+ L + +++ D + Sbjct: 1 MGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 60 Query: 92 DGEVIDRRYEDVTNKKR 108 + +R Sbjct: 61 GAPPVGDPRVRSKPIER 77 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+ IRK++ ++ + G+ STLS E G P ++ I Q + LD + Sbjct: 5 LRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELVGAPP 64 Query: 175 -GDEVIVPKSIKR 186 GD + K I+R Sbjct: 65 VGDPRVRSKPIER 77 >gi|315032681|gb|EFT44613.1| helix-turn-helix protein [Enterococcus faecalis TX0017] Length = 183 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSDDHSY 92 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|116493699|ref|YP_805433.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116103849|gb|ABJ68991.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 373 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I RK TQ+ +A +++V+ +E G I L +++S D + Sbjct: 4 NVGAVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDKL 63 Query: 91 YDGEVI----DRRYEDVTNKKRLDPYAIGARLKSIR 122 + + R + K+ + A LKSIR Sbjct: 64 MAYDAQLSSTEIRRIYTSMKQAFETQPGDAVLKSIR 99 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A + + RK KG++Q +G+ +++S +E G++ P+I + +D + Sbjct: 7 AVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDKLMAY 66 Query: 176 DEVIVPKSIKR 186 D + I+R Sbjct: 67 DAQLSSTEIRR 77 >gi|291279081|ref|YP_003495916.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290753783|dbj|BAI80160.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 196 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 31/72 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + ++G RI+ +R T +++A ++ ++ EN + I + N Sbjct: 1 MADFDINIGERIRKLRNDRGMTLQDVANLTGFSKALISQIENNVVMPPITTLAKIANVLN 60 Query: 85 ISFDWIYDGEVI 96 + + ++ E+ Sbjct: 61 VKMTYFFEEEIN 72 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R D+GM+ + L G + +S E +P I KI V + + +F Sbjct: 10 ERIRKLRNDRGMTLQDVANLTGFSKALISQIENNVVMPPITTLAKIANVLNVKMTY-FFE 68 Query: 176 DEVIVPKSIKRAKGNQ 191 +E+ KG++ Sbjct: 69 EEINYKDYYVVKKGDR 84 >gi|78043349|ref|YP_359532.1| MerR family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995464|gb|ABB14363.1| transcriptional regulator, MerR family [Carboxydothermus hydrogenoformans Z-2901] Length = 274 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + VG ++K +R+ T +E++ G S ++ E+G + SI L Y Sbjct: 89 EKKGPRIAVGQKLKALREKKGLTLEEVSQGTGVSVSYLSRIESGQVNVSIATLQKLATFY 148 Query: 84 EISFDWIYDG 93 E + + ++G Sbjct: 149 EKNLLYFFEG 158 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 20/166 (12%) Query: 45 KTQKEMAIGANQLESAVNLFEN-GMCST-------------SIRYALYLR-----NEYE- 84 T + A + + + +E G+ I ++ + Sbjct: 8 FTIGDAAKLIGVVPATLRNWEKAGLVKPGRQNGNYRIYSLKDIERLKKIKYLMRVKGFNI 67 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + + + E V +K+ A+G +LK++R+ KG++ E + G+ S LS Sbjct: 68 VGVKEYLAAQGEELPAEPVKIEKKGPRIAVGQKLKALREKKGLTLEEVSQGTGVSVSYLS 127 Query: 145 NYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGN 190 E G+ I +K+ +K+L + + G + K ++ G Sbjct: 128 RIESGQVNVSIATLQKLATFYEKNLLYFFEGMDTKEQKLVRAGLGQ 173 >gi|322412918|gb|EFY03825.1| hypothetical protein SDD27957_00030 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 121 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 38/82 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 V ++K +R + +Q +A A++ +ENG ++ + + L ++++ D Sbjct: 1 MTKVAEQLKQLRVKHQLSQDALAEQLFISRQAISKWENGDTTSDLENLVRLTEIFDVNLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLD 110 ++ + + + E + K LD Sbjct: 61 ELFLAKPNEVKVERIYENKPLD 82 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +LK +R +SQ + L + +S +E G T +++ ++ ++ +LD Sbjct: 1 MTKVAEQLKQLRVKHQLSQDALAEQLFISRQAISKWENGDTTSDLENLVRLTEIFDVNLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ V ++R N+ K DK Sbjct: 61 ELFLAKPNEVK--VERIYENKPLDLQKYDK 88 >gi|163731757|ref|ZP_02139204.1| transcriptional regulator HTH-3 family, putative [Roseobacter litoralis Och 149] gi|161395211|gb|EDQ19533.1| transcriptional regulator HTH-3 family, putative [Roseobacter litoralis Och 149] Length = 207 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA T ++ A A S ++ ENG S + L IS + Sbjct: 26 DLGVRVRELRKARAWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNISIPQL 85 Query: 91 YDGEVIDRRYEDVTNKK 107 + ++ + K Sbjct: 86 FTPPHAEQANGRLAVTK 102 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK + + + G+ STLS E G+ P +K+ + ++ Sbjct: 31 VRELRKARAWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNISIPQLFT--- 87 Query: 178 VIVPKSIKRAKGNQSSKKS 196 P ++A G + KS Sbjct: 88 ---PPHAEQANGRLAVTKS 103 >gi|160939733|ref|ZP_02087080.1| hypothetical protein CLOBOL_04624 [Clostridium bolteae ATCC BAA-613] gi|158437167|gb|EDP14932.1| hypothetical protein CLOBOL_04624 [Clostridium bolteae ATCC BAA-613] Length = 185 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 28/76 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +RK +Q+ ++ A++ +E G + L + +S D++ Sbjct: 3 FGEKLKFLRKQKGFSQERLSQQLTVSRQAISKWELGESLPDTENVIQLSKLFSVSIDFLL 62 Query: 92 DGEVIDRRYEDVTNKK 107 + + Sbjct: 63 NDNICSEADIPAVQHN 78 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +RK KG SQ + L + +S +E G ++P+ + ++ ++ +D+ Sbjct: 1 MTFGEKLKFLRKQKGFSQERLSQQLTVSRQAISKWELGESLPDTENVIQLSKLFSVSIDF 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLNDN 65 >gi|254723300|ref|ZP_05185088.1| DNA-binding protein [Bacillus anthracis str. A1055] Length = 374 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + + Sbjct: 65 ISYKPQMEQEDIKN 78 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKN 78 >gi|238924797|ref|YP_002938313.1| hypothetical protein EUBREC_2448 [Eubacterium rectale ATCC 33656] gi|238876472|gb|ACR76179.1| Hypothetical protein EUBREC_2448 [Eubacterium rectale ATCC 33656] gi|291526055|emb|CBK91642.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 108 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK RK Q E+A N + ++ ENG S+ + + + ++ D++ Sbjct: 1 MGNRIKIRRKELRIKQAELAEKLNISNNHMSSIENGRQKPSLDIFIRICDLLNVTPDYLL 60 Query: 92 DGEVIDRRYEDV 103 G + Sbjct: 61 LGSMHAYNIPQD 72 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R+K RK+ + Q E + L + N+ +S+ E GR P + +I + D++ Sbjct: 1 MGNRIKIRRKELRIKQAELAEKLNISNNHMSSIENGRQKPSLDIFIRICDLLNVTPDYLL 60 Query: 174 FG 175 G Sbjct: 61 LG 62 >gi|297565618|ref|YP_003684590.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296850067|gb|ADH63082.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 73 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R+A +Q ++A A+ + + E + ++ L L N +S D + Sbjct: 2 IGERLKALREARQMSQYDLARAAHVSQGLIWQIEANRKNPGLKTLLRLANALSVSPDQLL 61 Query: 92 D 92 Sbjct: 62 P 62 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG RLK++R+ + MSQ + + + + E R P +K ++ D + Sbjct: 1 MIGERLKALREARQMSQYDLARAAHVSQGLIWQIEANRKNPGLKTLLRLANALSVSPDQL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|227494440|ref|ZP_03924756.1| possible transcriptional regulator [Actinomyces coleocanis DSM 15436] gi|226832174|gb|EEH64557.1| possible transcriptional regulator [Actinomyces coleocanis DSM 15436] Length = 354 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 30/73 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R TQ+ +A+ A++ +E+ + L + + + + D + G Sbjct: 29 ENLQHLRSTRGLTQERLAVLLGVSRQAISKWESDRAYPEMDKLLTICDLFGCTLDELVTG 88 Query: 94 EVIDRRYEDVTNK 106 ++ + + + Sbjct: 89 DLRTTDADTLEDP 101 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R +G++Q LLG+ +S +E R PE+ I + LD Sbjct: 25 MSFRENLQHLRSTRGLTQERLAVLLGVSRQAISKWESDRAYPEMDKLLTICDLFGCTLDE 84 Query: 172 IYFGD 176 + GD Sbjct: 85 LVTGD 89 >gi|254476225|ref|ZP_05089611.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214030468|gb|EEB71303.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 207 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 40/96 (41%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 KSL ++ D+G R++++RKA + T + A A S ++ ENG S Sbjct: 7 KSLITIARASGEDVSAEPLDLGARVRELRKARDWTLEYAANQAGLARSTLSKIENGQMSP 66 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 + L +I+ ++ D+ ++ K Sbjct: 67 TYEALKKLAEGLQITIPQLFTQPQRDQINGRLSVTK 102 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + G+ STLS E G+ P + +K+ + + + ++ Sbjct: 29 ARVRELRKARDWTLEYAANQAGLARSTLSKIENGQMSPTYEALKKLAEGLQITIPQLFT 87 >gi|15674195|ref|NP_268370.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12725279|gb|AAK06311.1|AE006450_4 transcription regulator [Lactococcus lactis subsp. lactis Il1403] Length = 102 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 34/81 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G +++ +R TQ ++A + ++V+ +E S+ + L +++S D Sbjct: 3 MEYFGDKLRALRMEKKLTQNDLAARLGIVGASVSSYEKNKQYPSVEVLIQLCQTFDVSAD 62 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 ++ +++L Sbjct: 63 YLLGLSDDKNFNTSTLTEEQL 83 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 35/65 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G +L+++R +K ++Q + LG+ +++S+YE+ + P ++ ++ Q Sbjct: 1 MGMEYFGDKLRALRMEKKLTQNDLAARLGIVGASVSSYEKNKQYPSVEVLIQLCQTFDVS 60 Query: 169 LDWIY 173 D++ Sbjct: 61 ADYLL 65 >gi|15894856|ref|NP_348205.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024531|gb|AAK79545.1|AE007667_10 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508994|gb|ADZ20630.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 110 Score = 74.6 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI++ RK+ N TQ+ +A + V+ E G ++ + + I+ +I Sbjct: 8 IGDRIRNSRKSKNYTQENLAEYLDVSTVYVSKIECGKTKINLETLMKICKFLNITPSYIL 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 G D + ++K I Sbjct: 68 TGSTTDSENYQKNEITDMLKTCPPEKIKLI 97 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D IG R+++ RK K +Q + L + +S E G+T ++ KI + Sbjct: 1 MYIDYSIIGDRIRNSRKSKNYTQENLAEYLDVSTVYVSKIECGKTKINLETLMKICKFLN 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 +I G K Sbjct: 61 ITPSYILTGSTTDSENYQKN 80 >gi|323693263|ref|ZP_08107481.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502746|gb|EGB18590.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] Length = 151 Score = 74.6 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 5/92 (5%) Query: 25 IRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + Q D+ G +I+ +R + TQ+E+A N A++ +E + + + Sbjct: 1 MNQKQTDITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFL 60 Query: 83 YEISFDWI---YDGEVIDRRYEDVTNKKRLDP 111 + + D ++ ++ + D Sbjct: 61 FGVHMDDFAKEIITKMETCEKKEKRQFNKYDM 92 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 8/96 (8%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N+K+ D G +++ +R GM+Q E L + LSN+E+ P++ +KI + Sbjct: 2 NQKQTD-ITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFL 60 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 H+D + I + + + +K + +K Sbjct: 61 FGVHMDDF-------AKEIITKMETCEKKEKRQFNK 89 >gi|163746908|ref|ZP_02154265.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161380022|gb|EDQ04434.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 205 Score = 74.6 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 34/75 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK+ T +A + S ++ ENG S ++ L L + ++S + Sbjct: 7 LGARLRHLRKSRKLTLSALASLSGVAVSTISKIENGALSPTLDKVLRLADGLDLSIGQLI 66 Query: 92 DGEVIDRRYEDVTNK 106 E ID ++ Sbjct: 67 GEEQIDDHKSQPNSR 81 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 36/77 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +A+GARL+ +RK + ++ L G+ ST+S E G P + ++ + Sbjct: 5 HALGARLRHLRKSRKLTLSALASLSGVAVSTISKIENGALSPTLDKVLRLADGLDLSIGQ 64 Query: 172 IYFGDEVIVPKSIKRAK 188 + +++ KS ++ Sbjct: 65 LIGEEQIDDHKSQPNSR 81 >gi|24379268|ref|NP_721223.1| transcription regulator [Streptococcus mutans UA159] gi|24377185|gb|AAN58529.1|AE014922_4 hypothetical protein; putative transcriptional regulator [Streptococcus mutans UA159] Length = 296 Score = 74.6 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 37/69 (53%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R++D RK +Q+++A + A+ +E+G + + + L + +++S D + G+ Sbjct: 8 RLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQLLFGK 67 Query: 95 VIDRRYEDV 103 +R+ +D Sbjct: 68 EANRQSKDF 76 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL+ RK G+SQ + + L + ++ +E G P++ + + +D Sbjct: 3 MTFETRLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQ 62 Query: 172 IYFGDE 177 + FG E Sbjct: 63 LLFGKE 68 >gi|30263282|ref|NP_845659.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528657|ref|YP_020006.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186132|ref|YP_029384.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65320613|ref|ZP_00393572.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165869231|ref|ZP_02213891.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631940|ref|ZP_02390267.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637201|ref|ZP_02395481.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685020|ref|ZP_02876245.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170705153|ref|ZP_02895618.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650111|ref|ZP_02933112.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564884|ref|ZP_03017805.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813847|ref|YP_002813856.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602441|ref|YP_002867542.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685897|ref|ZP_05149756.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254738367|ref|ZP_05196070.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742466|ref|ZP_05200151.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254752683|ref|ZP_05204719.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761198|ref|ZP_05213222.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257916|gb|AAP27145.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503805|gb|AAT32481.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180059|gb|AAT55435.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164715957|gb|EDR21474.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514708|gb|EDR90074.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532238|gb|EDR94874.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130008|gb|EDS98870.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170671280|gb|EDT22018.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084063|gb|EDT69122.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564201|gb|EDV18165.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227004554|gb|ACP14297.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229266849|gb|ACQ48486.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 374 Score = 74.6 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + + Sbjct: 65 ISYKPQMEQEDIKN 78 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKN 78 >gi|255652581|ref|ZP_05399483.1| hypothetical protein CdifQCD_20531 [Clostridium difficile QCD-37x79] Length = 149 Score = 74.6 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K +R Q E+A N +S + ++EN + + L + ++ D++ Sbjct: 2 FGERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKR 108 + Sbjct: 62 GHTKTNYLVSANIPGMP 78 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK +R G+ Q E ++L + ST+ YE + P + K+ + D++ Sbjct: 1 MFGERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|257867132|ref|ZP_05646785.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873466|ref|ZP_05653119.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257801188|gb|EEV30118.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807630|gb|EEV36452.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 191 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 39/83 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ +SQ + L + T+SN+E ++ P++ + + LD Sbjct: 1 MNLSKQIKKHRERLSLSQEGLAEKLYVSRQTISNWENEKSYPDVHNLLLLSVLFDVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + ++I++ + +K Sbjct: 61 LVKGDVEQMKETIEKTAMDHYTK 83 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A ++ +EN + L L +++S D + Sbjct: 2 NLSKQIKKHRERLSLSQEGLAEKLYVSRQTISNWENEKSYPDVHNLLLLSVLFDVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 G+V + + K +D Y Sbjct: 62 VKGDVEQMK--ETIEKTAMDHYTKIM 85 >gi|229162632|ref|ZP_04290592.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus R309803] gi|228620895|gb|EEK77761.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus R309803] Length = 117 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K++RK+ TQ+++ N + +N +EN + S+ L + + + + D ++ Sbjct: 7 FAQNLKELRKSRGLTQEQLGSELNLSRNQINNYENKLFEPSMETLLQISSFFNVPLDTLF 66 Query: 92 DGEVIDRRYEDVT 104 G + Sbjct: 67 SGYDQTKDTVLEQ 79 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK +RK +G++Q + G L + + ++NYE P ++ +I LD + Sbjct: 6 VFAQNLKELRKSRGLTQEQLGSELNLSRNQINNYENKLFEPSMETLLQISSFFNVPLDTL 65 Query: 173 YFGDEVIVPKSIKRA 187 + G + +++A Sbjct: 66 FSGYDQTKDTVLEQA 80 >gi|255280273|ref|ZP_05344828.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255269364|gb|EET62569.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 421 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 15/113 (13%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K G + RK TQKE A ESAV+ +E GM I + + E+S Sbjct: 12 KTFGAFVLRRRKELGMTQKEFAARLYVTESAVSKWERGMSYPDITLIRSICSVLEVSEHE 71 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF----GKLLGM 138 + G + + K +R + ++ LLG Sbjct: 72 LLTGSEDTEKRTSEKLAE-----------KYLRLTRNYRLAQYLLYGAILLGC 113 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 + + GA + RK+ GM+Q EF L + S +S +E+G + P+I R I Sbjct: 4 EDFNMENKKTFGAFVLRRRKELGMTQKEFAARLYVTESAVSKWERGMSYPDITLIRSICS 63 Query: 164 VTKKHLDWIYFGDEVIVPKSIKR 186 V + + G E ++ ++ Sbjct: 64 VLEVSEHELLTGSEDTEKRTSEK 86 >gi|116332766|ref|YP_794293.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116098113|gb|ABJ63262.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 104 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 11/91 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K R + TQ+ +A ++ +E G I + L N Y +S D + Sbjct: 3 LGAKLKQARADHQLTQQAVATQVAVSRQTISSWETGKSFPDIDSLVTLSNLYGLSLDILI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + LD L+ +R Sbjct: 63 KEDT-----------GMLDYLRKSEILRKLR 82 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GA+LK R D ++Q + + T+S++E G++ P+I + + LD Sbjct: 1 MTLGAKLKQARADHQLTQQAVATQVAVSRQTISSWETGKSFPDIDSLVTLSNLYGLSLDI 60 Query: 172 IYFGD 176 + D Sbjct: 61 LIKED 65 >gi|333022876|ref|ZP_08450940.1| putative regulatory protein [Streptomyces sp. Tu6071] gi|332742728|gb|EGJ73169.1| putative regulatory protein [Streptomyces sp. Tu6071] Length = 184 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 29/84 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK T ++ S ++ E+G+ ++ L L + ++ D + Sbjct: 1 MGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIG 115 + R Sbjct: 61 GTRPVADPRVRAEPIVRHHRRMYP 84 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G RL+ +RK++GM+ G+ STLS E G P ++ + + + LD + Sbjct: 1 MGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 60 >gi|256391179|ref|YP_003112743.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357405|gb|ACU70902.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 175 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 57/149 (38%), Gaps = 3/149 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+ ++ +++ R A + Q+ ++ + +E G + S+++ + + Sbjct: 9 ARRRLGEMQSQLLSARHAASLPQQTLSDTLGVAARTLRDWEKGYDTPSLKHLITWADALG 68 Query: 85 ---ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 + D + + ED +R + + L + RK + +SQ + LLG+ + Sbjct: 69 FRLVVVDSLGSADQEVVEAEDGEPFERHEMRRLTRPLWTRRKARKLSQGDLALLLGVSRA 128 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ +E P + ++ Sbjct: 129 SVQRWEDADKFPRPIALIAWAGRLECSVE 157 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 24/67 (35%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P R + + + RKA +Q ++A+ ++V +E+ + Sbjct: 91 EPFERHEMRRLTRPLWTRRKARKLSQGDLALLLGVSRASVQRWEDADKFPRPIALIAWAG 150 Query: 82 EYEISFD 88 E S + Sbjct: 151 RLECSVE 157 >gi|229092281|ref|ZP_04223456.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42] gi|228691098|gb|EEL44864.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42] Length = 374 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + + Sbjct: 65 ISYKPQMEQEDIKN 78 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKN 78 >gi|126737704|ref|ZP_01753434.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126721097|gb|EBA17801.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 207 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 38/96 (39%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 KSL E D+G R++++RKA + T + A A S ++ ENG S Sbjct: 7 KSLITIARANGEEGETEPLDLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSP 66 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 + L +IS ++ + +T K Sbjct: 67 TYDALKKLAIGLQISVPQLFTPPQRGQVNGRMTVTK 102 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + G+ STLS E G+ P +K+ + + ++ Sbjct: 29 ARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYDALKKLAIGLQISVPQLFT 87 >gi|47564457|ref|ZP_00235502.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47558609|gb|EAL16932.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 374 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 + Sbjct: 66 CYTPQMEPEDIKD 78 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + P+ IK Sbjct: 61 IDELICYTPQMEPEDIKD 78 >gi|291326970|ref|ZP_06126519.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312079|gb|EFE52532.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 95 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 41/89 (46%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+ K VG +I+ +R+++ + K+++I + + +ENG + + L + Sbjct: 2 KRKISKSVGLKIRSLRESHGMSGKDLSILLGISQQHQSRYENGEVNIHVDTIYQLAQIFN 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYA 113 +S + + + D +++ K+ A Sbjct: 62 VSPTYFFTETITDINSTELSVNKKNYFSA 90 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++S+R+ GMS + LLG+ S YE G + ++ Q+ + + E Sbjct: 13 IRSLRESHGMSGKDLSILLGISQQHQSRYENGEVNIHVDTIYQLAQIFNVSPTYFFT--E 70 Query: 178 VIVPKSIKRAKGNQSS 193 I + N+ + Sbjct: 71 TITDINSTELSVNKKN 86 >gi|322391296|ref|ZP_08064766.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145722|gb|EFX41113.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 150 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K IR+ + TQ E+A + + + +E ++ + L N + + D+ Sbjct: 4 LGENLKKIRQEHKLTQVELANMLGISQKSYSHWETQKTEPTLENVVKLANIFNTTTDYFL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ I + V D I K R Sbjct: 64 -GQTIYSKANLVRFLDDYDVSNIKNWTKEER 93 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G LK IR++ ++Q+E +LG+ + S++E +T P ++ K+ + D Sbjct: 1 MAFLGENLKKIRQEHKLTQVELANMLGISQKSYSHWETQKTEPTLENVVKLANIFNTTTD 60 Query: 171 WIY 173 + Sbjct: 61 YFL 63 >gi|226322738|ref|ZP_03798256.1| hypothetical protein COPCOM_00510 [Coprococcus comes ATCC 27758] gi|225208899|gb|EEG91253.1| hypothetical protein COPCOM_00510 [Coprococcus comes ATCC 27758] Length = 106 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK++R QK + +S ++ +ENG+ + S L + ++ +S DW++ Sbjct: 24 ISEKIKELRTDLKMNQKNFSAAIGIRQSTLSSYENGVVTPSNDVLLTIAQKFHVSLDWLF 83 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + +I ++K +R D M+Q F +G+ STLS+YE G P I Sbjct: 13 FKEVDNMQESSISEKIKELRTDLKMNQKNFSAAIGIRQSTLSSYENGVVTPSNDVLLTIA 72 Query: 163 QVTKKHLDWIY 173 Q LDW++ Sbjct: 73 QKFHVSLDWLF 83 >gi|225352439|ref|ZP_03743462.1| hypothetical protein BIFPSEUDO_04061 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156946|gb|EEG70315.1| hypothetical protein BIFPSEUDO_04061 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 167 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R + N TQ+++A+ A++ +E+ + L L + + ++ D + G Sbjct: 5 ENLQYLRGSRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMLCDMFGVTLDDLVMG 64 Query: 94 EVI 96 +V Sbjct: 65 DVR 67 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R + M+Q + LLG+ +S +E + PE+ + + LD Sbjct: 1 MSFKENLQYLRGSRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMLCDMFGVTLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVMGD 65 >gi|254488763|ref|ZP_05101968.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] gi|214045632|gb|EEB86270.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] Length = 207 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 36/83 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA + T ++ A A S ++ ENG S + L EIS + Sbjct: 26 DLGARVRELRKARSWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKLAVGLEISVPQL 85 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 + + + K D A Sbjct: 86 FTPPSAGQINGRMVVTKSGDGAA 108 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + + G+ STLS E G+ P +K+ + + ++ Sbjct: 29 ARVRELRKARSWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKLAVGLEISVPQLFT 87 >gi|293374278|ref|ZP_06620606.1| toxin-antitoxin system, antitoxin component, Xre family [Turicibacter sanguinis PC909] gi|292647111|gb|EFF65093.1| toxin-antitoxin system, antitoxin component, Xre family [Turicibacter sanguinis PC909] Length = 119 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R + TQKE+A N SAV+++E + + ++ D++ Sbjct: 2 LGKRLKQLRNSAGLTQKELANKMNISSSAVSMYEADRRDPDTETLVKFSKVFNVTTDYLL 61 Query: 92 DGEVIDRRYED 102 ++ Sbjct: 62 GETSNKPLTQE 72 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RLK +R G++Q E + + +S +S YE R P+ + K +V D++ Sbjct: 1 MLGKRLKQLRNSAGLTQKELANKMNISSSAVSMYEADRRDPDTETLVKFSKVFNVTTDYL 60 Query: 173 YFGDEVIVP 181 G+ P Sbjct: 61 L-GETSNKP 68 >gi|290580727|ref|YP_003485119.1| hypothetical protein SmuNN2025_1201 [Streptococcus mutans NN2025] gi|254997626|dbj|BAH88227.1| hypothetical protein [Streptococcus mutans NN2025] Length = 294 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 37/69 (53%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R++D RK +Q+++A + A+ +E+G + + + L + +++S D + G+ Sbjct: 6 RLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQLLFGK 65 Query: 95 VIDRRYEDV 103 +R+ +D Sbjct: 66 EANRQSKDF 74 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL+ RK G+SQ + + L + ++ +E G P++ + + +D Sbjct: 1 MTFETRLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQ 60 Query: 172 IYFGDE 177 + FG E Sbjct: 61 LLFGKE 66 >gi|300724595|ref|YP_003713920.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] gi|22094605|gb|AAM91936.1|AF525420_7 putative repressor of flagellae [Xenorhabdus nematophila] gi|297631137|emb|CBJ91828.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] Length = 91 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ RK T E+A ++ +E G S+ + + + DW Sbjct: 7 VGKRIQIKRKETGVTAAELADKIGVSHQQLSRYERGTNKISLEHLVAISIALNTPADWFL 66 Query: 92 DGEVIDRRYEDVTNK 106 + + + Sbjct: 67 EDCFTPPKVQMNNQY 81 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK+ G++ E +G+ + LS YE+G ++ I DW Sbjct: 9 KRIQIKRKETGVTAAELADKIGVSHQQLSRYERGTNKISLEHLVAISIALNTPADWFL-- 66 Query: 176 DEVIVPKSIK 185 ++ P ++ Sbjct: 67 EDCFTPPKVQ 76 >gi|288573106|ref|ZP_06391463.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568847|gb|EFC90404.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 212 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 10/155 (6%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK++RK TQ ++A + V +E + + L E + ++ Sbjct: 5 GDRIKELRKRKQLTQDQLAQKMGVSRTTVVSWEKSKFEPDRQNTIDLAAALETTTSYLM- 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 D + ++ D L +R++ G+S E L+ +P L E+ Sbjct: 64 ------GETDDPSPQKADRQVPSGILAPMRQETGLSLDEAAALIDLPAEDLELMEKYEDR 117 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 + +K+ + + ++ D ++ K+ Sbjct: 118 ADSVLKQKLIKAYGR---YLSARDGETQQETEKKK 149 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 36/76 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y G R+K +RK K ++Q + + +G+ +T+ ++E+ + P+ + + + Sbjct: 1 MYQTGDRIKELRKRKQLTQDQLAQKMGVSRTTVVSWEKSKFEPDRQNTIDLAAALETTTS 60 Query: 171 WIYFGDEVIVPKSIKR 186 ++ + P+ R Sbjct: 61 YLMGETDDPSPQKADR 76 >gi|255308106|ref|ZP_05352277.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 141 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +RK N TQ+E+A N ++ +E+G I + L Y + D + Sbjct: 2 INENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K Sbjct: 62 NHSEEKTGIIVPPKGKFF 79 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I LKS+RK +Q E + L + +++ +E G +IP+I K+ ++ LD + Sbjct: 1 MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60 Query: 173 YFGDEV 178 E Sbjct: 61 VNHSEE 66 >gi|225378210|ref|ZP_03755431.1| hypothetical protein ROSEINA2194_03870 [Roseburia inulinivorans DSM 16841] gi|225209941|gb|EEG92295.1| hypothetical protein ROSEINA2194_03870 [Roseburia inulinivorans DSM 16841] Length = 201 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I D RK TQK+++ + ++ +E G + L L NE EI+ + + Sbjct: 5 KIGKFIADERKRKGYTQKQLSEKLAISDKTISKWERGNGFPEVSLLLPLCNELEITVNEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 GE + ++ + Sbjct: 65 LSGERVSEEEYLKKAEENM 83 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 2/96 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + RK KG +Q + + L + + T+S +E+G PE+ + + Sbjct: 1 MDQIKIGKFIADERKRKGYTQKQLSEKLAISDKTISKWERGNGFPEVSLLLPLCNELEIT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSS--KKSKKDKKS 202 ++ + G+ V + +K+A+ N + +++++ KK Sbjct: 61 VNELLSGERVSEEEYLKKAEENMVNLVRETQESKKK 96 >gi|219854874|ref|YP_002471996.1| hypothetical protein CKR_1531 [Clostridium kluyveri NBRC 12016] gi|219568598|dbj|BAH06582.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 257 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 38/87 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R++++R+ NN TQ +A N ++ ++ +E G +I L + + +S D++ Sbjct: 52 NFAMRLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDYL 111 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 I + + ++ + Sbjct: 112 IGVTNIKKVESNYLSRIPIFQITKNHP 138 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 10/126 (7%) Query: 81 NEYEI-SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 N Y I SF I G + ++ RL+ +R++ ++Q +L + Sbjct: 22 NFYNIISFLEIKYGFYCIYYKIYLGVGTIMN---FAMRLRELREENNLTQGAIASILNLT 78 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +S YE GR P I+ + + +D++ +IK+ + N S+ Sbjct: 79 KANISKYELGRLQPNIETLKLLSDHFNVSIDYLIG------VTNIKKVESNYLSRIPIFQ 132 Query: 200 KKSSNP 205 ++P Sbjct: 133 ITKNHP 138 >gi|295101224|emb|CBK98769.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Faecalibacterium prausnitzii L2-6] Length = 272 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G I RK TQ ++A N + AV+ +E G C L L N ++ + + Sbjct: 5 DTGKFIAGCRKEKGLTQAQLAEKLNITDRAVSKWETGKCMPDASIMLELCNILGVTVNEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 GE I+ + + L Sbjct: 65 LSGERIEMNNYEEKVNENL 83 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 42/92 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ G + RK+KG++Q + + L + + +S +E G+ +P+ ++ + Sbjct: 1 MNQIDTGKFIAGCRKEKGLTQAQLAEKLNITDRAVSKWETGKCMPDASIMLELCNILGVT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ + G+ + + ++ N K K + Sbjct: 61 VNELLSGERIEMNNYEEKVNENLIELKRKDEN 92 >gi|261366338|ref|ZP_05979221.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571941|gb|EFB77476.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 399 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ RK +Q+ +A A+ +E S+ L ++S D + Sbjct: 3 LGENIQAARKKKGLSQEALAEQVGVSRQALGKWEKDTALPSLDNLQALAAALDVSVDGLL 62 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ RK KG+SQ + +G+ L +E+ +P + + + +D Sbjct: 1 MTLGENIQAARKKKGLSQEALAEQVGVSRQALGKWEKDTALPSLDNLQALAAALDVSVDG 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|300174134|ref|YP_003773300.1| hypothetical membrane protein [Leuconostoc gasicomitatum LMG 18811] gi|299888513|emb|CBL92481.1| hypothetical membrane protein [Leuconostoc gasicomitatum LMG 18811] Length = 156 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +++ R N TQ+++A V+ +ENG I L L + + S D I Sbjct: 2 NFGQKLQTARMNMNLTQQKIADDFFITRQTVSSWENGNSYPDIMTLLKLSDYFGFSIDEI 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 + R + D + K Sbjct: 62 LREDKKMRLFLDKKDVKH 79 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 8/90 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L++ R + ++Q + + T+S++E G + P+I K+ +D Sbjct: 1 MNFGQKLQTARMNMNLTQQKIADDFFITRQTVSSWENGNSYPDIMTLLKLSDYFGFSIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 I D K+ + K K D K Sbjct: 61 ILRED--------KKMRLFLDKKDVKHDLK 82 >gi|314937221|ref|ZP_07844566.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] gi|313654654|gb|EFS18401.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] Length = 137 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 37/73 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +RK+ N +Q+++A +++ +E + + ++ L + + +S + + Sbjct: 4 KIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSLNQL 63 Query: 91 YDGEVIDRRYEDV 103 G I + + V Sbjct: 64 IKGVEIMQVNKYV 76 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 38/65 (58%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +RK K MSQ + + LG+ ++SN+E+ + P++K +I ++ L+ + G Sbjct: 7 HQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSLNQLIKG 66 Query: 176 DEVIV 180 E++ Sbjct: 67 VEIMQ 71 >gi|313113184|ref|ZP_07798810.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624523|gb|EFQ07852.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 270 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G+ + +R+ TQKE+A + AV+ +E G+ I + L + ++ + Sbjct: 24 FGSFLAQLRREKGMTQKELAACLYVSDKAVSKWERGLSVPDISLLVPLAEQLNVTVAELL 83 Query: 92 DG------EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 G + R + +K L A + R K + +LG+ Sbjct: 84 HGCRVEEEQRFTREETEELIRKALTFSAEPPERRQARTQKFLPLYGVSVVLGL 136 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 48/106 (45%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + +++ L+ A G+ L +R++KGM+Q E L + + +S +E+G Sbjct: 1 MEPQTELLAHKEDKTMYELNKTAFGSFLAQLRREKGMTQKELAACLYVSDKAVSKWERGL 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 ++P+I + + + + G V + R + + +K+ Sbjct: 61 SVPDISLLVPLAEQLNVTVAELLHGCRVEEEQRFTREETEELIRKA 106 >gi|291558119|emb|CBL35236.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium siraeum V10Sc8a] Length = 373 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+ D+RKA + TQ E+A ++ +ENG+ I L +E+S D + + Sbjct: 9 RLSDLRKAKHITQGELAEFVGTSFQTISKWENGITMPDITVLPVLAAFFEVSIDELLGIK 68 Query: 95 VIDRRYEDVTNKKRLDPYAIG-ARLKSIR 122 + + + R Sbjct: 69 PLKGDVYSSEETDSEKFWDNHFEYIMRSR 97 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 9/93 (9%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D I RL +RK K ++Q E + +G T+S +E G T+P+I + + Sbjct: 1 MDKTVINFRLSDLRKAKHITQGELAEFVGTSFQTISKWENGITMPDITVLPVLAAFFEVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +D + IK KG+ S + +K Sbjct: 61 IDELLG---------IKPLKGDVYSSEETDSEK 84 >gi|271966668|ref|YP_003340864.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509843|gb|ACZ88121.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 201 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 33/80 (41%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ Q VG R++ +R+ + T +++ S ++ E+G ++ L L Sbjct: 1 MDNDLDQALGAVGPRLRTLRRQRDTTLADLSATTGISVSTLSRLESGARRPTLELLLPLA 60 Query: 81 NEYEISFDWIYDGEVIDRRY 100 + ++ D + D Sbjct: 61 RAHGVTLDELVDAPPTGDPR 80 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R+ + + + G+ STLS E G P ++ + + LD + Sbjct: 11 AVGPRLRTLRRQRDTTLADLSATTGISVSTLSRLESGARRPTLELLLPLARAHGVTLDEL 70 Query: 173 Y----FGDEVIVPKSIKR 186 GD I + + R Sbjct: 71 VDAPPTGDPRIHLRPVTR 88 >gi|149914872|ref|ZP_01903401.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] gi|149811060|gb|EDM70897.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] Length = 207 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R++D+RK+ T ++ A A S ++ ENG S + L EIS + Sbjct: 26 NLGERVRDLRKSRGWTLEQAASQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQL 85 Query: 91 YDGEVIDRRYEDVTNKK 107 + ++ ++ K Sbjct: 86 FTPPQREKISGRMSVTK 102 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 6/88 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK +G + + G+ STLS E G+ P + +K+ + + ++ Sbjct: 29 ERVRDLRKSRGWTLEQAASQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQLFT- 87 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 P ++ G S K+ + + + Sbjct: 88 -----PPQREKISGRMSVTKAGEGQHQA 110 >gi|291547752|emb|CBL20860.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 160 Score = 74.2 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK R+ + +Q+E+A ++ +EN + + L ++IS D + Sbjct: 2 ELGKQIKMHRQEAHLSQEELANRVYVSRQTISNWENDKSYPDVNSLVLLSEIFQISLDNL 61 Query: 91 YDGEVI-DRRYEDVTNKKRLDPYAIGARL 118 G++ + ++++ Y + Sbjct: 62 IKGDIEVMKDVIQKEEIEKMNRYGKSYTI 90 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 44/86 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K R++ +SQ E + + T+SN+E ++ P++ + ++ + LD Sbjct: 1 MELGKQIKMHRQEAHLSQEELANRVYVSRQTISNWENDKSYPDVNSLVLLSEIFQISLDN 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD ++ I++ + + ++ K Sbjct: 61 LIKGDIEVMKDVIQKEEIEKMNRYGK 86 >gi|218513526|ref|ZP_03510366.1| probable transcriptional regulator protein, LacI family [Rhizobium etli 8C-3] Length = 219 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 28/85 (32%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Q + +G RI+ +R T ++A + + ++ E S + + Sbjct: 2 EEQLEQAIGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALG 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +S + E +++ Sbjct: 62 LSLSAFFAEEGQQASPLARRQDQQV 86 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R++ +R +KG++ + G+ + +S E+ P +I L Sbjct: 8 AIGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAF 67 Query: 173 YFGDEVIVPKSIKRAKGN 190 + + +R Sbjct: 68 FAEEGQQASPLARRQDQQ 85 >gi|190889915|ref|YP_001976457.1| transcriptional regulator protein, LacI family [Rhizobium etli CIAT 652] gi|190695194|gb|ACE89279.1| probable transcriptional regulator protein, LacI family [Rhizobium etli CIAT 652] Length = 189 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 28/85 (32%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Q + +G RI+ +R T ++A + + ++ E S + + Sbjct: 2 EEQLEQAIGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALG 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +S + E +++ Sbjct: 62 LSLSAFFAEEGQQASPLARRQDQQV 86 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R++ +R +KG++ + G+ + +S E+ P +I L Sbjct: 8 AIGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAF 67 Query: 173 YFGDEVIVPKSIKRAKGN 190 + + +R Sbjct: 68 FAEEGQQASPLARRQDQQ 85 >gi|254245401|ref|ZP_04938722.1| Transcriptional regulator, MerR family [Burkholderia cenocepacia PC184] gi|124870177|gb|EAY61893.1| Transcriptional regulator, MerR family [Burkholderia cenocepacia PC184] Length = 216 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 32/83 (38%) Query: 10 SLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 S + + ++ E +G +I+ +R+ T E A A + ++ E G Sbjct: 18 STERFRSSMVLPPDESVLVAVSLGNKIRALRQRLKLTLDEAATTAGISKPFLSQVERGRA 77 Query: 70 STSIRYALYLRNEYEISFDWIYD 92 + SI + + ++ + D Sbjct: 78 TPSITSLVRIAKALGVTMQYFID 100 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 32/83 (38%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 E ++ L ++G +++++R+ ++ E G+ LS E+GR Sbjct: 17 ISTERFRSSMVLPPDESVLVAVSLGNKIRALRQRLKLTLDEAATTAGISKPFLSQVERGR 76 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 P I +I + + + Sbjct: 77 ATPSITSLVRIAKALGVTMQYFI 99 >gi|327398256|ref|YP_004339125.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM 10411] gi|327180885|gb|AEA33066.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM 10411] Length = 180 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 30/91 (32%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK RK T K +A ++ ++ E G SI + ++ + Sbjct: 2 NMAEKIKSYRKKQGLTLKALAEKVGCTDAYISQIETGKAVPSISVLQKIAQSLDVQVRDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E + + ++ Y + Sbjct: 62 LSDEQSNDKIFLTKEERTQIIYPGSHVYAEL 92 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++KS RK +G++ + +G ++ +S E G+ +P I +KI Q + Sbjct: 1 MNMAEKIKSYRKKQGLTLKALAEKVGCTDAYISQIETGKAVPSISVLQKIAQSLDVQVRD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + ++ + + + Q Sbjct: 61 LLSDEQSNDKIFLTKEERTQ 80 >gi|320532299|ref|ZP_08033153.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135486|gb|EFW27580.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 62 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ +R+A TQ ++ ++N E G S+ A+ + +E + + I+ Sbjct: 5 VRGLREARGLTQAQLGAALGVSRQSINSIEKGKYDPSLPLAIAIARYFETTVEEIFH 61 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 33/58 (56%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R+ +G++Q + G LG+ ++++ E+G+ P + A I + + ++ I+ Sbjct: 3 NDVRGLREARGLTQAQLGAALGVSRQSINSIEKGKYDPSLPLAIAIARYFETTVEEIF 60 >gi|315150068|gb|EFT94084.1| helix-turn-helix protein [Enterococcus faecalis TX0012] Length = 183 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQYSEDHSY 92 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|289579057|ref|YP_003477684.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528770|gb|ADD03122.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 182 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 33/88 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +RK T KE+ ++A +E SI + + + +++S D++ Sbjct: 2 IGDRLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 I + + K Sbjct: 62 GRTNIREPQFVEEANIQSEFLKEFEWSK 89 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 48/93 (51%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG RLK +RK+KG++ E G+++G+ ++ + YE+ R P I+ KI + LD++ Sbjct: 1 MIGDRLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + P+ ++ A K + K +P Sbjct: 61 LGRTNIREPQFVEEANIQSEFLKEFEWSKIGDP 93 >gi|30260593|ref|NP_842970.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Ames] gi|47777813|ref|YP_022528.1| prophage lambdaba04, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183444|ref|YP_026696.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Sterne] gi|65317858|ref|ZP_00390817.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|254686819|ref|ZP_05150677.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724894|ref|ZP_05186677.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A1055] gi|254738955|ref|ZP_05196657.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254756199|ref|ZP_05208228.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762018|ref|ZP_05213867.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30253961|gb|AAP24456.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Ames] gi|47551518|gb|AAT35262.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177371|gb|AAT52747.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Sterne] Length = 114 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G +K +RK+ TQ++++ N S + +E I + + + + +S D Sbjct: 1 MRHFGQILKKLRKSRGLTQEQLSHKLNLSRSQIKNWETDRYQPDIDTLVIIASFFNVSVD 60 Query: 89 WIY 91 + Sbjct: 61 ALI 63 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK +RK +G++Q + L + S + N+E R P+I I +D Sbjct: 1 MRHFGQILKKLRKSRGLTQEQLSHKLNLSRSQIKNWETDRYQPDIDTLVIIASFFNVSVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGN 190 + + + N Sbjct: 61 ALIGFTNEFDEEPLTELLSN 80 >gi|319938810|ref|ZP_08013174.1| cro/CI family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811860|gb|EFW08126.1| cro/CI family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 189 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +RK TQ ++A N +S +ENG + SI A L + +S ++ Sbjct: 1 MSNRLKVLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSIPYLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + + K+ + Sbjct: 61 GLDDNPVLVNPGSAKEIFKGFV 82 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +RK+KG++Q + K+L S YE G+T I+ A+ + + + ++ Sbjct: 1 MSNRLKVLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSIPYLL 60 Query: 174 FGDEVIV 180 D+ V Sbjct: 61 GLDDNPV 67 >gi|311900230|dbj|BAJ32638.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 200 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 10/146 (6%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + VG R++ IR+ + T +++ S ++ E+G ++ L L Sbjct: 1 MGEDFEAVLTGVGPRLRAIRQQHGTTLAQLSEQTGISVSTLSRLESGGRRPTLELLLPLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF-----GKL 135 + ++ D + D + R L R GM + G Sbjct: 61 RAHGVALDELVDAPPTGDPRVRLRPFVRHGW----TYLPLARSLGGMQAYKIVVPPGGGR 116 Query: 136 LGMPNSTLSNYEQGRTIPEIKPARKI 161 T +E + + K+ Sbjct: 117 ENCEQRTHEGHE-WLYVLSGELLLKL 141 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L++IR+ G + + + G+ STLS E G P ++ + + LD + Sbjct: 16 LRAIRQQHGTTLAQLSEQTGISVSTLSRLESGGRRPTLELLLPLARAHGVALDELV 71 >gi|229815035|ref|ZP_04445372.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM 13280] gi|229809265|gb|EEP45030.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM 13280] Length = 155 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 9/81 (11%) Query: 22 TPEIRQYWK---------DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 PE ++Y + + R+ D+R+ +Q+++A A++ +E Sbjct: 11 APEYQRYKEAFIMDDATTQLADRLLDLRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPE 70 Query: 73 IRYALYLRNEYEISFDWIYDG 93 + + L Y +S D+I G Sbjct: 71 VDNVVKLAQIYRVSTDFILTG 91 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+ G SQ + LLG+ +S +E + PE+ K+ Q+ + D+I G Sbjct: 37 LRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVDNVVKLAQIYRVSTDFILTG 91 >gi|89054805|ref|YP_510256.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864354|gb|ABD55231.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 208 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ R++++RKA + T ++ A A S ++ ENG S + L N IS + Sbjct: 27 DLAARVRELRKARSWTLEQAAGQAGLARSTLSKIENGQMSPTYDALKKLANGLGISVPQL 86 Query: 91 YDGEVIDRRYEDVTNKKR 108 + V + + KR Sbjct: 87 FTPSVAPQGGGRMVTTKR 104 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + + G+ STLS E G+ P +K+ + ++ Sbjct: 30 ARVRELRKARSWTLEQAAGQAGLARSTLSKIENGQMSPTYDALKKLANGLGISVPQLFT 88 >gi|317472207|ref|ZP_07931536.1| hypothetical protein HMPREF1011_01886 [Anaerostipes sp. 3_2_56FAA] gi|331088310|ref|ZP_08337229.1| hypothetical protein HMPREF1025_00812 [Lachnospiraceae bacterium 3_1_46FAA] gi|316900296|gb|EFV22281.1| hypothetical protein HMPREF1011_01886 [Anaerostipes sp. 3_2_56FAA] gi|330408554|gb|EGG88020.1| hypothetical protein HMPREF1025_00812 [Lachnospiraceae bacterium 3_1_46FAA] Length = 120 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RIK R TQ+ +A + + ++ E G S+ + + N +S D Sbjct: 5 YKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSVSVD 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + VI + K + ++ + Sbjct: 65 TLLCDNVIASKIVFEKEAKDIFSDCDEYEVRFL 97 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D AIG R+K R KG++Q L+ + + +SN E G+T + I Sbjct: 1 MEVDYKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALS 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 +D + + + ++ Sbjct: 61 VSVDTLLCDNVIASKIVFEK 80 >gi|291543870|emb|CBL16979.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 194 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+ I+ +R TQ +A + AV+ +E G + + L E+ D + Sbjct: 7 GSLIRRLRLEQGMTQLALAERLGVSDKAVSKWERGCGAPDLSILPLLSQALEVDTDTLLR 66 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGAR 117 G++ + N KR+ Y Sbjct: 67 GDL-EANDLTNGNLKRMRFYLCPEC 90 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 36/68 (52%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G+ ++ +R ++GM+Q+ + LG+ + +S +E+G P++ + Q + Sbjct: 1 MDQIRTGSLIRRLRLEQGMTQLALAERLGVSDKAVSKWERGCGAPDLSILPLLSQALEVD 60 Query: 169 LDWIYFGD 176 D + GD Sbjct: 61 TDTLLRGD 68 >gi|256545968|ref|ZP_05473323.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] gi|256398390|gb|EEU12012.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] Length = 166 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK+ RK N TQ+ +A N AV+ +E + S+ + L + + + Sbjct: 2 IGQKIKNKRKELNLTQEYLAKELNISRQAVSKWEKEISEPSMDNLIKLSEIFGVDIGYFK 61 Query: 92 DGEVIDRRYEDV 103 + + + + + Sbjct: 62 NEKEEESKIRKI 73 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++K+ RK+ ++Q K L + +S +E+ + P + K+ ++ + + Sbjct: 1 MIGQKIKNKRKELNLTQEYLAKELNISRQAVSKWEKEISEPSMDNLIKLSEIFGVDIGYF 60 Query: 173 YFGDEVIVP 181 E Sbjct: 61 KNEKEEESK 69 >gi|227533389|ref|ZP_03963438.1| DNA-binding protein; transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188955|gb|EEI69022.1| DNA-binding protein; transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 373 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I RK TQ+ +A +++V+ +E G I L +++S D + Sbjct: 4 NVGAVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDKL 63 Query: 91 YDGEVI----DRRYEDVTNKKRLDPYAIGARLKSIR 122 + + R + K+ + A LKSIR Sbjct: 64 MAYDAQLSSTEIRRIYTSMKQAFETQPGDAVLKSIR 99 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A + + RK KG++Q +G+ +++S +E G++ P+I + +D + Sbjct: 7 AVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDKLMAY 66 Query: 176 DEVIVPKSIKR 186 D + I+R Sbjct: 67 DAQLSSTEIRR 77 >gi|159044104|ref|YP_001532898.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911864|gb|ABV93297.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 208 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+R++D+RKA N T ++ A A S ++ ENG S + L + EI+ + Sbjct: 27 NLGSRVRDLRKARNWTLEQAAGQAGLARSTLSKIENGQMSPTYEALKKLADGLEITIPQL 86 Query: 91 YD 92 + Sbjct: 87 FT 88 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 + + + ++P +G+R++ +RK + + + G+ STLS E G+ P + + Sbjct: 14 HRESGDTIPVEPLNLGSRVRDLRKARNWTLEQAAGQAGLARSTLSKIENGQMSPTYEALK 73 Query: 160 KIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 K+ + + ++ ++A+ N ++ D ++P Sbjct: 74 KLADGLEITIPQLFT--------PPRKAQVNGRMAITRSDAGEAHP 111 >gi|313115714|ref|ZP_07801167.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] gi|310621932|gb|EFQ05434.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] Length = 102 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 8/105 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + IRK ++ TQ+E+A A +E+G L L + S D++ Sbjct: 2 ENLTAIRKESHATQQEVADYLGISRQAYGNYESGKREPDYETLLKLGEYFNCSIDYLLGS 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 R ++ L L+ R Q KLL + Sbjct: 62 SRSVRYPLLSEFERSL--------LEQYRNATPAIQSAVCKLLDL 98 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +IRK+ +Q E LG+ NYE G+ P+ + K+ + +D++ Sbjct: 1 MENLTAIRKESHATQQEVADYLGISRQAYGNYESGKREPDYETLLKLGEYFNCSIDYLL 59 >gi|228940374|ref|ZP_04102945.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973291|ref|ZP_04133880.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979854|ref|ZP_04140175.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407] gi|228779869|gb|EEM28115.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407] gi|228786487|gb|EEM34477.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819500|gb|EEM65554.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941011|gb|AEA16907.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 374 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 1/103 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I + RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 6 IHKIIANKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQIEFG 133 + + RL + + + +G+ + + Sbjct: 66 SYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECRGIIKKYYS 108 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIANKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYTPQMEQEDIKN 78 >gi|229151508|ref|ZP_04279711.1| hypothetical protein bcere0011_30530 [Bacillus cereus m1550] gi|228632051|gb|EEK88677.1| hypothetical protein bcere0011_30530 [Bacillus cereus m1550] Length = 374 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A+ +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + Sbjct: 65 ISYTPQMEQEDIKD 78 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYTPQMEQEDIKD 78 >gi|257416739|ref|ZP_05593733.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257158567|gb|EEU88527.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 158 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|52079718|ref|YP_078509.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52785086|ref|YP_090915.1| Xre [Bacillus licheniformis ATCC 14580] gi|52002929|gb|AAU22871.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52347588|gb|AAU40222.1| Xre [Bacillus licheniformis ATCC 14580] Length = 117 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R TQ+E+A + + +ENG L + Y+++ D++ Sbjct: 2 LGGRLKSLRGKR--TQEEVAKQIGVSRARYSHYENGRSEPDYETLKKLADYYKVTIDYLL 59 Query: 92 DGEVIDRRYEDVTNKKRL 109 G + ED L Sbjct: 60 TGTEKKKNIEDEIADPDL 77 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LKS+R + +Q E K +G+ + S+YE GR+ P+ + +K+ K +D++ G E Sbjct: 6 LKSLRGKR--TQEEVAKQIGVSRARYSHYENGRSEPDYETLKKLADYYKVTIDYLLTGTE 63 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 K+I+ + + + +D + +P Sbjct: 64 --KKKNIEDEIADPDLQIAYRDMQEFSP 89 >gi|297560849|ref|YP_003679823.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845297|gb|ADH67317.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 198 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 39/87 (44%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + +T E + V RI+ +R A + +E+A A+ +S+++ ENG ++ + Sbjct: 2 MPMTQEDGELDGLVRRRIRALRVAQGWSLEELAKRAHLSQSSLSRIENGRRRLALDQLVT 61 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTN 105 L + + D + + D + + Sbjct: 62 LARALDTTLDQLVETADDDVVISPMVD 88 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E K + S+LS E GR + + + LD + Sbjct: 16 RRRIRALRVAQGWSLEELAKRAHLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQLVE 75 Query: 175 --GDEVIVPKSIKRAKGNQ 191 D+V++ + A+G Sbjct: 76 TADDDVVISPMVDGARGRM 94 >gi|291550659|emb|CBL26921.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus torques L2-14] Length = 298 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 5/99 (5%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + RK GM+Q + + L M + ++S +E+G +P++ ++ ++ Sbjct: 1 MDLVKIGKYIAGKRKALGMTQKQLAEKLNMSDKSVSKWERGICLPDVSVYMELCEILGIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN-----QSSKKSKKDKKS 202 ++ G+++ K+++ N + SKK +K+ KS Sbjct: 61 INEFLAGEDIDAENVEKKSEDNIIQVTKDSKKKQKNLKS 99 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 5/96 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I RKA TQK++A N + +V+ +E G+C + + L IS + Sbjct: 5 KIGKYIAGKRKALGMTQKQLAEKLNMSDKSVSKWERGICLPDVSVYMELCEILGISINEF 64 Query: 91 YDGEVIDRRYEDVTNKKRL-----DPYAIGARLKSI 121 GE ID + ++ + D LKSI Sbjct: 65 LAGEDIDAENVEKKSEDNIIQVTKDSKKKQKNLKSI 100 >gi|225568758|ref|ZP_03777783.1| hypothetical protein CLOHYLEM_04837 [Clostridium hylemonae DSM 15053] gi|225162257|gb|EEG74876.1| hypothetical protein CLOHYLEM_04837 [Clostridium hylemonae DSM 15053] Length = 205 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+ IK++R+ TQ+++A + V+ +E G + L + +S + + Sbjct: 18 GSIIKELRERKGYTQRQLAESVCVSDKTVSKWETGKGLPDVGIITELASALGVSLAELLN 77 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGAR 117 GE + R N K++ Y Sbjct: 78 GEYAENRNRSG-NMKKISFYVCPLC 101 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 34/65 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y G+ +K +R+ KG +Q + + + + + T+S +E G+ +P++ ++ L Sbjct: 15 YVTGSIIKELRERKGYTQRQLAESVCVSDKTVSKWETGKGLPDVGIITELASALGVSLAE 74 Query: 172 IYFGD 176 + G+ Sbjct: 75 LLNGE 79 >gi|77408024|ref|ZP_00784773.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77413847|ref|ZP_00790025.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77160087|gb|EAO71220.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173386|gb|EAO76506.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 112 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 7/93 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +RK TQK++A + A +E+G S + + +S D++ Sbjct: 4 ERLKSLRKEAKLTQKDIASQFGFSQPAYQQWESGKKKPSAETLEKFASFFNVSTDYLL-- 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + N LD + LK G Sbjct: 62 -----GNTNKKNANDLDIEKVKESLKKSLGYNG 89 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 30/84 (35%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLKS+RK+ ++Q + G +E G+ P + K D++ Sbjct: 1 MFSERLKSLRKEAKLTQKDIASQFGFSQPAYQQWESGKKKPSAETLEKFASFFNVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKS 196 + K +S KKS Sbjct: 61 LGNTNKKNANDLDIEKVKESLKKS 84 >gi|291557731|emb|CBL34848.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 302 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 14/103 (13%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RK + TQ+++A AV+ +ENG + + +++S D +Y Sbjct: 7 KQLQKLRKQSGITQEQLADKLGVTAQAVSKWENG-SYPDGDLLPKIADIFDVSIDNLYGR 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 +E L +R SQ + L Sbjct: 66 GEEKCSFEQQV-------------LNHMRAIADSSQDSCAEWL 95 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +L+ +RK G++Q + LG+ +S +E + P+ KI + +D + Sbjct: 4 VFSKQLQKLRKQSGITQEQLADKLGVTAQAVSKWEN-GSYPDGDLLPKIADIFDVSIDNL 62 Query: 173 Y-FGDE 177 Y G+E Sbjct: 63 YGRGEE 68 >gi|223985090|ref|ZP_03635186.1| hypothetical protein HOLDEFILI_02491 [Holdemania filiformis DSM 12042] gi|223962912|gb|EEF67328.1| hypothetical protein HOLDEFILI_02491 [Holdemania filiformis DSM 12042] Length = 136 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 35/82 (42%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++Q K +G I +RKA TQ E+A + AV+ +E + I+ L E Sbjct: 1 MKQSGKTMGMVIASLRKAQGMTQAELAAKMQVTDKAVSKWERDLSCPDIQSLPRLAEILE 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNK 106 +S + + GE N+ Sbjct: 61 VSVEELMQGETRPASSVKRINE 82 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G + S+RK +GM+Q E + + + +S +E+ + P+I+ ++ ++ + ++ + Sbjct: 8 MGMVIASLRKAQGMTQAELAAKMQVTDKAVSKWERDLSCPDIQSLPRLAEILEVSVEELM 67 Query: 174 FGDEVIVPKSIKRAKG 189 G E S+KR Sbjct: 68 QG-ETRPASSVKRINE 82 >gi|169830890|ref|YP_001716872.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169637734|gb|ACA59240.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 245 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 6/98 (6%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RI R+ +QK++A A S ++ E+G S S+ + + ++ Sbjct: 2 DIGPRIARFRERAGMSQKKLAELAALDRSHISKIESGDTSPSLEALMRICESMGVTLAEF 61 Query: 91 YDGEVIDRRYEDV-----TNKKRLDPYAIGARL-KSIR 122 + +V + D Y L K R Sbjct: 62 FGSDVQPVPVVAGVVKARIPIRTEDYYEGFLELDKKCR 99 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + R+ GMSQ + +L + S +S E G T P ++ +I + L + D Sbjct: 7 IARFRERAGMSQKKLAELAALDRSHISKIESGDTSPSLEALMRICESMGVTLAEFFGSDV 66 Query: 178 VIVP 181 VP Sbjct: 67 QPVP 70 >gi|148544879|ref|YP_001272249.1| ABC transporter related [Lactobacillus reuteri DSM 20016] gi|184154216|ref|YP_001842557.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM 1112] gi|227364019|ref|ZP_03848119.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri MM2-3] gi|325683224|ref|ZP_08162740.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri MM4-1A] gi|148531913|gb|ABQ83912.1| ABC transporter related [Lactobacillus reuteri DSM 20016] gi|183225560|dbj|BAG26077.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM 1112] gi|227070941|gb|EEI09264.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri MM2-3] gi|324977574|gb|EGC14525.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri MM4-1A] Length = 293 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R +Q E+A AV+ +ENG SI + L + +S D + G Sbjct: 8 QLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLILGT 67 Query: 95 VIDRRYEDVTNK 106 + N Sbjct: 68 NDFNQPLVKLNN 79 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y+ +L +R +K +SQ E L + +S +E G P I + +V LD Sbjct: 3 YSFPHQLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLDR 62 Query: 172 IYFGDEVIVPKSIK 185 + G +K Sbjct: 63 LILGTNDFNQPLVK 76 >gi|255103138|ref|ZP_05332115.1| XRE family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255308330|ref|ZP_05352501.1| XRE family transcriptional regulator [Clostridium difficile ATCC 43255] Length = 121 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK++RK + TQKE+A ++ +E L L + + +S D++ Sbjct: 2 IGYRIKELRKEKDITQKELATFLGLTPKMISFYEKEERFPPHDIILKLSDFFNVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 G+V + ++++ + ++ +K K Sbjct: 62 -GKVNVKNIDNLSELELIENLNFSDDIKEALK 92 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R+K +RK+K ++Q E LG+ +S YE+ P K+ D++ Sbjct: 1 MIGYRIKELRKEKDITQKELATFLGLTPKMISFYEKEERFPPHDIILKLSDFFNVSTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|323487870|ref|ZP_08093128.1| immunity repressor protein [Planococcus donghaensis MPA1U2] gi|323398604|gb|EGA91392.1| immunity repressor protein [Planococcus donghaensis MPA1U2] Length = 114 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +R+ TQ+E+A + +++ +ENG S S+ + + N S D++ Sbjct: 2 LSKRLKLVRQKRKMTQEELARTLGTTKGSISNYENGRSSPSVEVLVNIANILNSSTDYLL 61 Query: 92 DGEVIDRRYEDVT 104 + + Sbjct: 62 GRTLESSDFLREK 74 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK +R+ + M+Q E + LG ++SNYE GR+ P ++ I + D++ Sbjct: 1 MLSKRLKLVRQKRKMTQEELARTLGTTKGSISNYENGRSSPSVEVLVNIANILNSSTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|256852137|ref|ZP_05557524.1| predicted protein [Lactobacillus jensenii 27-2-CHN] gi|260661294|ref|ZP_05862207.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|282931547|ref|ZP_06337045.1| DNA-binding protein [Lactobacillus jensenii 208-1] gi|256615549|gb|EEU20739.1| predicted protein [Lactobacillus jensenii 27-2-CHN] gi|260547749|gb|EEX23726.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|281304321|gb|EFA96425.1| DNA-binding protein [Lactobacillus jensenii 208-1] Length = 136 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K++R+ANN +Q+E+A +++ +E G I L Y +S D++ Sbjct: 3 NLNERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLDYL 62 Query: 91 YDGEVIDRRYEDVT 104 + + Sbjct: 63 VGNSKSESIKINEQ 76 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK++R+ +SQ E L + ++S +E G +IP+I+ ++ ++ LD Sbjct: 1 MNNLNERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLD 60 Query: 171 WIY---FGDEVIVPKSIKRAKGN 190 ++ + + + + I R K N Sbjct: 61 YLVGNSKSESIKINEQILRKKRN 83 >gi|75762759|ref|ZP_00742588.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489747|gb|EAO53134.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 136 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK +Q+ +A AV+ +ENG + + +E+S D++ Sbjct: 2 EFGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDYL 61 Query: 91 YD 92 Sbjct: 62 LK 63 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK+KG+SQ + L +S +E G+ PE + I +V + LD+ Sbjct: 1 MEFGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDY 60 Query: 172 IYFGDEVIVPKSIK 185 + ++++ Sbjct: 61 LLKETAEQSNENVE 74 >gi|320354394|ref|YP_004195733.1| XRE family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122896|gb|ADW18442.1| transcriptional regulator, XRE family [Desulfobulbus propionicus DSM 2032] Length = 436 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK +RK +QKE+A A S+++ E + S+ L I Sbjct: 255 DLGARIKAVRKKQGLSQKELAEKAGVTPSSISQIEKNLIYPSLPALFRLAESLSIGVASF 314 Query: 91 YDG 93 ++G Sbjct: 315 FEG 317 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 34/64 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +GAR+K++RK +G+SQ E + G+ S++S E+ P + ++ + + Sbjct: 254 FDLGARIKAVRKKQGLSQKELAEKAGVTPSSISQIEKNLIYPSLPALFRLAESLSIGVAS 313 Query: 172 IYFG 175 + G Sbjct: 314 FFEG 317 >gi|186472983|ref|YP_001860325.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195315|gb|ACC73279.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 204 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 2/114 (1%) Query: 8 ETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG 67 + ++ T + + VG +I+ +R T +++ A +S ++ E Sbjct: 3 SSGMRKGSSGTSVTAAQSASVPPRVGEQIQRLRNERKMTLDDLSRAAGVSKSMLSEIERD 62 Query: 68 MCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK--RLDPYAIGARLK 119 + +I A L N +S D ++ + + L+ + +L+ Sbjct: 63 KANPTIAVAWRLTNALGVSLDSLFAPQKAPDPIAVSGPHEIPTLNGHEARYQLR 116 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 32/69 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ M+ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 29 EQIQRLRNERKMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLFAP 88 Query: 176 DEVIVPKSI 184 + P ++ Sbjct: 89 QKAPDPIAV 97 >gi|268610635|ref|ZP_06144362.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G IK +R TQK++A N + AV+ +E G + L + + + Sbjct: 29 GQLIKRLRTELGMTQKQLAERINVSDKAVSKWERGNGCPDVSLLSALADVFGTDIRVLLS 88 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGAR 117 GE+ D+ + N K L Y Sbjct: 89 GEI-DKNESEKGNMKNLKFYVCKDC 112 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 4/103 (3%) Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 ++I + ++ +D G +K +R + GM+Q + + + + + +S +E+G Sbjct: 7 WDIIKTQSKNHKEVMNMDQVKTGQLIKRLRTELGMTQKQLAERINVSDKAVSKWERGNGC 66 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 P++ + V + + G+ KGN + K Sbjct: 67 PDVSLLSALADVFGTDIRVLLSGEIDKNESE----KGNMKNLK 105 >gi|251779375|ref|ZP_04822295.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083690|gb|EES49580.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 115 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 26/85 (30%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +RK TQ ++A + +E G L + + +S D++ Sbjct: 9 ERLVTLRKEKGLTQYDLATQLGFSRGQIGNYEQGSREPDQETLLKIAKFFNVSSDYLLGI 68 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 +D L L Sbjct: 69 SDKRNYTDDNEVTIALHSDTEYDDL 93 Score = 61.5 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + RL ++RK+KG++Q + LG + NYEQG P+ + KI + Sbjct: 1 MIKSVQFKERLVTLRKEKGLTQYDLATQLGFSRGQIGNYEQGSREPDQETLLKIAKFFNV 60 Query: 168 HLDWIY 173 D++ Sbjct: 61 SSDYLL 66 >gi|297190002|ref|ZP_06907400.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718661|gb|EDY62569.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 209 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E+ +G R++ R+ T ++ S ++ E G ++ L L EY Sbjct: 5 EVDGTLAAMGPRLRATREQRGATLAGISSATGISPSTLSRIETGRRKPTLEVVLRLVKEY 64 Query: 84 EISFDWI 90 +S D + Sbjct: 65 GVSLDEL 71 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL++ R+ +G + G+ STLS E GR P ++ ++ + LD + Sbjct: 12 AMGPRLRATREQRGATLAGISSATGISPSTLSRIETGRRKPTLEVVLRLVKEYGVSLDEL 71 >gi|160935455|ref|ZP_02082837.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] gi|158441813|gb|EDP19513.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] Length = 184 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ +RK T K++A ++ E G S+ + +S ++ Sbjct: 2 VGEKIRKLRKEKKLTLKDIAEATGLSIGYISQLERGAVEPSLSSLRKVSEFLGVSP-YLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++++ + + I Sbjct: 61 VDQSEHHPAMVKSDQRPIIKFPKSEIFYEI 90 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +++ +RK+K ++ + + G+ +S E+G P + RK+ + ++ Sbjct: 1 MVGEKIRKLRKEKKLTLKDIAEATGLSIGYISQLERGAVEPSLSSLRKVSEFLGVSP-YL 59 Query: 173 YFGDEVIVPKSIKRAK 188 P +K + Sbjct: 60 LVDQSEHHPAMVKSDQ 75 >gi|126348447|emb|CAJ90170.1| putative regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 191 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +RK T ++ S ++ E+G+ S+ L + +++ D + Sbjct: 11 VGPRLRQVRKEREVTLAALSETTGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 70 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+ +RK++ ++ + G+ STLS E G P ++ I Q + LD + Sbjct: 15 LRQVRKEREVTLAALSETTGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELVGAPP 74 Query: 175 -GDEVIVPKSIKR 186 GD + K I+R Sbjct: 75 VGDPRVRAKPIER 87 >gi|255102244|ref|ZP_05331221.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] Length = 141 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +RK N TQ+E+A N ++ +E+G I + L Y + D + Sbjct: 2 INENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K Sbjct: 62 NHSEEKTGIIVPPKGKFF 79 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I LKS+RK +Q E + L + +++ +E G +IP+I K+ ++ LD + Sbjct: 1 MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60 Query: 173 YFGDEV 178 E Sbjct: 61 VNHSEE 66 >gi|126699658|ref|YP_001088555.1| putative regulatory protein [Clostridium difficile 630] gi|255101172|ref|ZP_05330149.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|115251095|emb|CAJ68926.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 120 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 37/93 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RIK R TQ+ +A N S ++ E G S+ + + N +S D Sbjct: 5 YKAIGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALSVSVD 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + V+ + K + ++S+ Sbjct: 65 TLLCDNVLSSKVIFEKEAKDIFSDCDEYEIRSL 97 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D AIG R+K R KG++Q ++ M S +SN E G+T + I Sbjct: 1 MEIDYKAIGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALS 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 +D + + + ++ Sbjct: 61 VSVDTLLCDNVLSSKVIFEK 80 >gi|150398657|ref|YP_001329124.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030172|gb|ABR62289.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 197 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 +LI+ Q + VG R++ +R A + T ++A A + ++ E G S + + Sbjct: 3 SLIMENLGSQLDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQLLA 62 Query: 78 YLRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 L + + ++ V + +RL Sbjct: 63 RLCSALGTTLSALFASGVSEASPLARRQDQRL 94 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 30/76 (39%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + + N +G R++++R + ++ + G+ + +S E+G P + Sbjct: 1 MQSLIMENLGSQLDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQL 60 Query: 158 ARKIKQVTKKHLDWIY 173 ++ L ++ Sbjct: 61 LARLCSALGTTLSALF 76 >gi|255307046|ref|ZP_05351217.1| putative regulatory protein [Clostridium difficile ATCC 43255] Length = 120 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 37/93 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RIK R TQ+ +A N S ++ E G S+ + + N +S D Sbjct: 5 YKAIGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALSVSVD 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + V+ + K + ++S+ Sbjct: 65 TLLCDNVLSSKVIFEKEAKDIFSDCDEYEIRSL 97 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D AIG R+K R KG++Q ++ M S +SN E G+T + I Sbjct: 1 MEIDYKAIGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALS 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 +D + + + ++ Sbjct: 61 VSVDTLLCDNVLSSKVIFEK 80 >gi|325264845|ref|ZP_08131573.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029834|gb|EGB91121.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 693 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+ +R ++ TQ +MA S +E G + ++ + + + + S D + Sbjct: 5 EFHERLTALRTGSSLTQTQMAELLGISRSTYANYEVGKRTPDLKMLIKIADVFTCSLDEL 64 Query: 91 YDGEVIDRRYEDVTN 105 + Sbjct: 65 VGRNTPMPYIGNNCP 79 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + RL ++R ++Q + +LLG+ ST +NYE G+ P++K KI V Sbjct: 1 MAKTEFHERLTALRTGSSLTQTQMAELLGISRSTYANYEVGKRTPDLKMLIKIADVFTCS 60 Query: 169 LDWIY 173 LD + Sbjct: 61 LDELV 65 >gi|304406701|ref|ZP_07388356.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304344234|gb|EFM10073.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 121 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 43/93 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++R+ N TQ+++AI N+ + + +E S +I L + +++S D+++ Sbjct: 3 FGERLKELREQRNMTQQDVAIAVNKSRTDIAGYETKGTSPNIETVRRLADLFKVSIDYMF 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + + + R+ + K+ Sbjct: 63 GRTNDPYQLFTREEDMSPEQKNVIYRIAELIKN 95 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 10/82 (12%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK +R+ + M+Q + + + ++ YE T P I+ R++ + K +D+ Sbjct: 1 MTFGERLKELREQRNMTQQDVAIAVNKSRTDIAGYETKGTSPNIETVRRLADLFKVSIDY 60 Query: 172 ----------IYFGDEVIVPKS 183 ++ +E + P+ Sbjct: 61 MFGRTNDPYQLFTREEDMSPEQ 82 >gi|289705735|ref|ZP_06502119.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] gi|289557575|gb|EFD50882.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] Length = 476 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK T ++A S ++L EN + + + + + Sbjct: 6 LGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQRIAEVLGVPVEDLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G RR E +R A L Sbjct: 66 TGRAPTRRAELEIEVERFARSEHYASL 92 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 34/67 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A+G R++ +RK G++ + + G+ S LS E R P + ++I +V Sbjct: 1 MDAVALGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQRIAEVLGVP 60 Query: 169 LDWIYFG 175 ++ + G Sbjct: 61 VEDLLTG 67 >gi|210621162|ref|ZP_03292504.1| hypothetical protein CLOHIR_00447 [Clostridium hiranonis DSM 13275] gi|210154899|gb|EEA85905.1| hypothetical protein CLOHIR_00447 [Clostridium hiranonis DSM 13275] Length = 199 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 43/107 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ RK +N TQ+E+A +A++ +E+G SI + +++S D + Sbjct: 2 EFNEKLQYFRKKSNLTQEELAEKLFVSRTAISKWESGRGMPSISSLKAISEVFDVSIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 E I E + I + + + FGK + Sbjct: 62 LSSEEIIEAAEKEKKENMKSFKNIIFGIIDLMSIIFLFIPLFGKEIN 108 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ RK ++Q E + L + + +S +E GR +P I + I +V +D Sbjct: 1 MEFNEKLQYFRKKSNLTQEELAEKLFVSRTAISKWESGRGMPSISSLKAISEVFDVSIDE 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|239916764|ref|YP_002956322.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|281414779|ref|ZP_06246521.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|239837971|gb|ACS29768.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] Length = 488 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK T ++A S ++L EN + + + + + Sbjct: 18 LGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQRIAEVLGVPVEDLL 77 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G RR E +R A L Sbjct: 78 TGRAPTRRAELEIEVERFARSEHYASL 104 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + +D A+G R++ +RK G++ + + G+ S LS E R P + Sbjct: 1 MMTRPLPEDSATVDAVALGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLS 60 Query: 157 PARKIKQVTKKHLDWIYFG 175 ++I +V ++ + G Sbjct: 61 LVQRIAEVLGVPVEDLLTG 79 >gi|161508263|ref|YP_001569094.1| DNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734835|ref|ZP_04869000.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|282912706|ref|ZP_06320501.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|160369778|gb|ABX30747.1| DNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727208|gb|EES95937.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|270269068|gb|ACZ66060.1| hypothetical protein SAP035B_020 [Staphylococcus aureus] gi|270269096|gb|ACZ66088.1| hypothetical protein SAP036A_016 [Staphylococcus aureus] gi|270269128|gb|ACZ66120.1| hypothetical protein SAP042A_015 [Staphylococcus aureus] gi|270300247|gb|ACZ69053.1| hypothetical protein SAP058A_010 [Staphylococcus aureus] gi|270300466|gb|ACZ69272.1| hypothetical protein SAP071A_016 [Staphylococcus aureus] gi|282323431|gb|EFB53748.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|312439078|gb|ADQ78148.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH60] gi|320143353|gb|EFW35135.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 113 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 7/95 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK+ R+ +Q+E+A +V+ +E+ S+ + + + + I+ D + Sbjct: 2 KLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITIDHL 61 Query: 91 YDGEVIDRRYEDVTNKKR-------LDPYAIGARL 118 G+ ++ N + +D L Sbjct: 62 IKGDTCFKKVILEGNYRENNRVPFIVDFLYDFWWL 96 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R+ KG SQ E +L + ++S +E + P + + + +D Sbjct: 1 MKLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITIDH 60 Query: 172 IYFGDEVIVPKSIK 185 + GD ++ Sbjct: 61 LIKGDTCFKKVILE 74 >gi|24378898|ref|NP_720853.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|290581081|ref|YP_003485473.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|24376780|gb|AAN58159.1|AE014887_7 putative transcriptional regulator [Streptococcus mutans UA159] gi|254997980|dbj|BAH88581.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 135 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K R+ ++ TQ+ +A ++ +EN I + L + Y+IS D + Sbjct: 2 NIGEKLKTARQQSHLTQEAVADLILVSRQTISNWENEKSYPDIVNLIKLSDLYQISLDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + D T + L Sbjct: 62 LKDDGKMIEHLDKTTNAVKSNQKLQTFL 89 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 41/84 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK+ R+ ++Q L+ + T+SN+E ++ P+I K+ + + LD Sbjct: 1 MNIGEKLKTARQQSHLTQEAVADLILVSRQTISNWENEKSYPDIVNLIKLSDLYQISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D ++ K +S++K Sbjct: 61 LLKDDGKMIEHLDKTTNAVKSNQK 84 >gi|56964891|ref|YP_176622.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911134|dbj|BAD65661.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 109 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 48/104 (46%), Gaps = 6/104 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R++++RKA+ TQ+++A ESA +E G S+R L Y +S ++ Sbjct: 3 ELNKRLRELRKAHQLTQQDVASFLGITESAYGFYEQGRNEPSLRKLKQLAEIYHVSISYL 62 Query: 91 ------YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + + ++D+ +++ + IRK++ S Sbjct: 63 AGETDRINEQTQRYYFKDLDKEEQEFLEEQLKLFRKIRKNRRCS 106 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 36/75 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL+ +RK ++Q + LG+ S YEQGR P ++ +++ ++ + Sbjct: 1 MVELNKRLRELRKAHQLTQQDVASFLGITESAYGFYEQGRNEPSLRKLKQLAEIYHVSIS 60 Query: 171 WIYFGDEVIVPKSIK 185 ++ + I ++ + Sbjct: 61 YLAGETDRINEQTQR 75 >gi|95931163|ref|ZP_01313886.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95132769|gb|EAT14445.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 215 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 27/176 (15%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE-YEISFDWIY 91 G RIK+IR +Q E+A + V+ E+G S L L + ++ DW+ Sbjct: 3 GQRIKEIRLLLEMSQAELADELCISKGQVSNVESGNKVPS-EMLLELIIFKFGVNRDWLI 61 Query: 92 DGEVIDRRYEDVTNKK----------------------RLDPYAIGARLKSIRKDKGM-S 128 DG+ + + +K + G+ + Sbjct: 62 DGKGMPFEEVQPAKPSLSSKAMVTAAVVGTAFPQVSVGLIATVGAAKLVKKLCGAYGVEN 121 Query: 129 QIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 Q E G+ ST+SN+ Q +PE + + + T +D + + V KS Sbjct: 122 QSELASKCFGIRKSTVSNWIQQDKVPEKYVYKAL-RETGVSVDDLVNEEVYSVTKS 176 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G R+K IR MSQ E L + +SN E G +P I + DW+ Sbjct: 1 MKGQRIKEIRLLLEMSQAELADELCISKGQVSNVESGNKVPSEMLLELIIFKFGVNRDWL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSK 194 G + + ++ AK + SSK Sbjct: 61 IDGKGMPFEE-VQPAKPSLSSK 81 >gi|331092227|ref|ZP_08341055.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401659|gb|EGG81238.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] Length = 154 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I RK N TQ+++A ++ +E G C L +E EI+ ++ Sbjct: 6 IGKYISLKRKQKNMTQEQLAEKLGVSNKTISKWETGKCMPDYSIIKNLCDELEITVAELF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 DGE + + D L+ I++ Sbjct: 66 DGET-----SGEKSVRVYDKEQFLNLLRRIQE 92 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + RK K M+Q + + LG+ N T+S +E G+ +P+ + + + Sbjct: 1 MNQLVIGKYISLKRKQKNMTQEQLAEKLGVSNKTISKWETGKCMPDYSIIKNLCDELEIT 60 Query: 169 LDWIYFGDEVIVPKS 183 + ++ G+ Sbjct: 61 VAELFDGETSGEKSV 75 >gi|325687904|gb|EGD29924.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 94 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K IR+ +Q ++A ++ +EN + L + Y+IS D + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENNKTILDSASLIRLADFYQISLDEL 60 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +LK IR+ KG SQ + + LG T+SN+E +TI + ++ + LD + Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENNKTILDSASLIRLADFYQISLDEL 60 >gi|332653120|ref|ZP_08418865.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332518266|gb|EGJ47869.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 71 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K++R A Q+ + ++L E G + SI AL + + + D ++ Sbjct: 3 LGNRLKELRAAKGLNQQGLGSLVGASRQTISLIERGDYNPSITLALRIAKVFGTTVDEVF 62 Query: 92 DGEVIDRRY 100 D Sbjct: 63 YLTEEDEEQ 71 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G RLK +R KG++Q G L+G T+S E+G P I A +I +V +D Sbjct: 1 MPLGNRLKELRAAKGLNQQGLGSLVGASRQTISLIERGDYNPSITLALRIAKVFGTTVDE 60 Query: 172 IYFGDEVIVPK 182 +++ E + Sbjct: 61 VFYLTEEDEEQ 71 >gi|228924819|ref|ZP_04087976.1| transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834828|gb|EEM80310.1| transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 186 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I RK +N +Q+E+A + +++ +EN I L + + +S D + Sbjct: 2 NIGKQIHYFRKRDNMSQEELAAKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDNL 61 Query: 91 YDGEVIDRRYEDVTN 105 G+V + E + Sbjct: 62 VKGDVKIMKEELQKS 76 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK MSQ E + + ++SN+E R P+I + + LD Sbjct: 1 MNIGKQIHYFRKRDNMSQEELAAKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDN 60 Query: 172 IYFGDEVIVPKSIKRA 187 + GD I+ + ++++ Sbjct: 61 LVKGDVKIMKEELQKS 76 >gi|331087784|ref|ZP_08336710.1| hypothetical protein HMPREF1025_00293 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409765|gb|EGG89201.1| hypothetical protein HMPREF1025_00293 [Lachnospiraceae bacterium 3_1_46FAA] Length = 181 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 1/102 (0%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + + IK R+ N TQ+++A V +ENG + A L E Sbjct: 26 EREVWSMALNDNIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALEL 85 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 ++S D + E ++ + K + RL+ RK Sbjct: 86 DVSMDELISDEDVNDIQVNYVIGKS-ERIQNRMRLQEFRKKL 126 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +K R++K ++Q + L + T+ +E G P++ A+K+ +D Sbjct: 32 MALNDNIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALELDVSMDE 91 Query: 172 IYFGDEV 178 + ++V Sbjct: 92 LISDEDV 98 >gi|325663237|ref|ZP_08151687.1| hypothetical protein HMPREF0490_02428 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470691|gb|EGC73921.1| hypothetical protein HMPREF0490_02428 [Lachnospiraceae bacterium 4_1_37FAA] Length = 120 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RIK R TQ+ +A + + ++ E G S+ + + N +S D Sbjct: 5 YKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSVSVD 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + VI + K + ++ + Sbjct: 65 TLLCDNVIASKIVFEKEAKDIFSDCDEFEVRFL 97 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D AIG R+K R KG++Q L+ + + +SN E G+T + I Sbjct: 1 MEVDYKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALS 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 +D + + + ++ Sbjct: 61 VSVDTLLCDNVIASKIVFEK 80 >gi|295094077|emb|CBK83168.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 189 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G+ ++++RK TQ+++A +V+ +E G + + L + Y++ Sbjct: 3 QKKSGSFLRELRKEKQLTQEQLAERFGVTSRSVSRWETGSNMPDLSILVELADFYDVDIR 62 Query: 89 WIYDGEVIDRRYEDVTNKK 107 I DGE ++ Sbjct: 63 DIIDGERKGEDMNKEEKER 81 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G+ L+ +RK+K ++Q + + G+ + ++S +E G +P++ ++ Sbjct: 1 MDQKKSGSFLRELRKEKQLTQEQLAERFGVTSRSVSRWETGSNMPDLSILVELADFYDVD 60 Query: 169 LDWIYFGD---EVIVPKSIKRAKGNQSSKKSKKD 199 + I G+ E + + +R + +++K+ Sbjct: 61 IRDIIDGERKGEDMNKEEKERLQLVADYAETEKN 94 >gi|271964933|ref|YP_003339129.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508108|gb|ACZ86386.1| transcriptional regulator protein-like protein [Streptosporangium roseum DSM 43021] Length = 489 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 2/107 (1%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 E L +T E+ G R++ +RK T ++ ++ S ++L ENG + Sbjct: 7 EEPLSLTQELDLI--AFGQRLRHLRKQRGLTLSDLGERVSRAPSQLSLLENGKREPKLSL 64 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 L + + + + RR + + + A L R Sbjct: 65 LKSLATALNVPVEELLRRQAPSRRAQLEMALEEAQRDPLYAGLGLAR 111 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + LD A G RL+ +RK +G++ + G+ + S LS E G+ P++ + + Sbjct: 14 QELDLIAFGQRLRHLRKQRGLTLSDLGERVSRAPSQLSLLENGKREPKLSLLKSLATALN 73 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 ++ + +RA+ + +++++D Sbjct: 74 VPVEELL-----RRQAPSRRAQLEMALEEAQRD 101 >gi|225570544|ref|ZP_03779569.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] gi|225160741|gb|EEG73360.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] Length = 367 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I R+ TQ+++A +S+V+ +E G I L + IS D + Sbjct: 5 NIGKNIMKYRRETGITQEQLAEHMGVSKSSVSKWETGNAYPDICLLPELATLFNISVDTL 64 Query: 91 YDGEVI 96 E Sbjct: 65 MGYEPQ 70 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG + R++ G++Q + + +G+ S++S +E G P+I ++ + Sbjct: 1 MAAVNIGKNIMKYRRETGITQEQLAEHMGVSKSSVSKWETGNAYPDICLLPELATLFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + K I + Sbjct: 61 VDTLMGYEPQLTKKRIAK 78 >gi|124007647|ref|ZP_01692351.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] gi|123986945|gb|EAY26710.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] Length = 275 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 34 TRIKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ IR+ TQ +A SA++ +E+G I + + + +S D + + Sbjct: 5 KNLRYIREEKYKITQGALAEILGVSRSALSAYEDGRAEPRILLLIKIAQYFAVSIDEMVN 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + VT ++L+ Y ++K R Sbjct: 65 VNFAEAEQAYVTRIEQLNKYITAHQIKINR 94 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 112 YAIGARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 L+ IR++K ++Q ++LG+ S LS YE GR P I KI Q +D Sbjct: 1 MFFSKNLRYIREEKYKITQGALAEILGVSRSALSAYEDGRAEPRILLLIKIAQYFAVSID 60 Query: 171 W 171 Sbjct: 61 E 61 >gi|323691130|ref|ZP_08105410.1| hypothetical protein HMPREF9475_00271 [Clostridium symbiosum WAL-14673] gi|323504827|gb|EGB20609.1| hypothetical protein HMPREF9475_00271 [Clostridium symbiosum WAL-14673] Length = 130 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 36/74 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ N KTQ++++ + + +E +R+ L L + Y +S D++ Sbjct: 4 LGERLRLLREKNGKTQEDISKVIGTTQQIYSRYETNKTELPVRHLLNLSSYYNVSTDYLL 63 Query: 92 DGEVIDRRYEDVTN 105 + + +N Sbjct: 64 GRIDYPKIAPEFSN 77 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ +R+ G +Q + K++G S YE +T ++ + D++ Sbjct: 6 ERLRLLREKNGKTQEDISKVIGTTQQIYSRYETNKTELPVRHLLNLSSYYNVSTDYLL 63 >gi|220911413|ref|YP_002486722.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858291|gb|ACL38633.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 198 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + VG R+K +R + T +A S ++ E+G ++ L L Sbjct: 1 MEENLDDVLAAVGPRLKALRLRRDVTLTALAAATGISVSTLSRLESGQRRPNLELLLPLA 60 Query: 81 NEYEISFDWIY 91 +++ D + Sbjct: 61 QAHQVPLDELV 71 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RLK++R + ++ G+ STLS E G+ P ++ + Q + LD + Sbjct: 11 AVGPRLKALRLRRDVTLTALAAATGISVSTLSRLESGQRRPNLELLLPLAQAHQVPLDEL 70 Query: 173 Y 173 Sbjct: 71 V 71 >gi|154496374|ref|ZP_02035070.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC 29799] gi|150274457|gb|EDN01534.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC 29799] Length = 307 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 30/77 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R +Q+ + A++ +E + + L +E++ + Sbjct: 3 LGQKIQTLRHDAGLSQEGLGEKLGVSRQAISKWEADGAVPEVDKLIALSRLFEVNLHDLL 62 Query: 92 DGEVIDRRYEDVTNKKR 108 E R + + ++ Sbjct: 63 QVEGTSREEPEESGEQP 79 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 40/94 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++++R D G+SQ G+ LG+ +S +E +PE+ + ++ + +L Sbjct: 1 MTLGQKIQTLRHDAGLSQEGLGEKLGVSRQAISKWEADGAVPEVDKLIALSRLFEVNLHD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + + + + + +K P Sbjct: 61 LLQVEGTSREEPEESGEQPPEEAAENPLEKDQPP 94 >gi|194467173|ref|ZP_03073160.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454209|gb|EDX43106.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 293 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R +Q E+A AV+ +ENG SI + L + +S D + G Sbjct: 8 QLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLILGT 67 Query: 95 VIDRRYEDVTNK 106 + N Sbjct: 68 NDFNQPLVKLNN 79 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 PY+ +L +R +K +SQ E L + +S +E G P I + +V LD Sbjct: 2 PYSFPHQLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLD 61 Query: 171 WIYFGDEVIVPKSIK 185 + G +K Sbjct: 62 RLILGTNDFNQPLVK 76 >gi|323141521|ref|ZP_08076407.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413980|gb|EFY04813.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 104 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 44/98 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K VG RIK +R NN Q E+A ++ ++ E+G ++ + + N + D Sbjct: 7 YKAVGLRIKTLRLKNNIYQTELAKNIGVSQTHMSNIESGRAGLTLENLVKMTNIFNCGID 66 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 I GE ++ T+ + I L+ ++ KG Sbjct: 67 DIVFGEEKAKKETQTTSLENFTMQDIVQALQMLKTIKG 104 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 43/84 (51%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 K++D A+G R+K++R + Q E K +G+ + +SN E GR ++ K+ + Sbjct: 3 KQVDYKAVGLRIKTLRLKNNIYQTELAKNIGVSQTHMSNIESGRAGLTLENLVKMTNIFN 62 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGN 190 +D I FG+E ++ + N Sbjct: 63 CGIDDIVFGEEKAKKETQTTSLEN 86 >gi|308272863|emb|CBX29467.1| hypothetical protein N47_J04480 [uncultured Desulfobacterium sp.] Length = 225 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 11/147 (7%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNE 82 E + V I ++RK +Q E+A +S ++ E+ S+ + Sbjct: 30 EKERVNAQVARTIYELRKDAGLSQGELAELVETTQSVISRLEDADYDGHSLSMLQRIAKA 89 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + ++ K YA G +K +R + G S +F K G+ Sbjct: 90 LSCRL---------NVTFKKDDPKVTTLRYAFGELIKKLRLEGGWSIDQFVKKAGIDKEE 140 Query: 143 LSNYEQG-RTIPEIKPARKIKQVTKKH 168 + E+ P KI + K Sbjct: 141 ALSIERDLSYKPSPLTLYKIAEFYKIP 167 Score = 42.2 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 1/65 (1%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRN 81 P++ G IK +R + + A + E + S + Sbjct: 103 PKVTTLRYAFGELIKKLRLEGGWSIDQFVKKAGIDKEEALSIERDLSYKPSPLTLYKIAE 162 Query: 82 EYEIS 86 Y+I Sbjct: 163 FYKIP 167 Score = 42.2 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 +Y+ + + +K + + +RKD G+SQ E +L+ S +S E Sbjct: 14 LYNRYIKNDPKRHAALEKERVNAQVARTIYELRKDAGLSQGELAELVETTQSVISRLEDA 73 Query: 150 RTI-PEIKPARKIKQVTKKHLDWIYFGDEVIV 180 + ++I + L+ + D+ V Sbjct: 74 DYDGHSLSMLQRIAKALSCRLNVTFKKDDPKV 105 >gi|225378570|ref|ZP_03755791.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans DSM 16841] gi|225209584|gb|EEG91938.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans DSM 16841] Length = 150 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 40/97 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ +RK+ TQ+++A N +++ +E+G + + L ++++ D++ Sbjct: 2 EFAEKLITLRKSRELTQEQLAEQLNVSRQSISKWESGQVIPEVEKIVELSKVFDVTVDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 ID ++ + K + K + Sbjct: 62 LKPSEIDELSVKTEILEQQQKQMLVREQKRTQISKNI 98 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L ++RK + ++Q + + L + ++S +E G+ IPE++ ++ +V +D+ Sbjct: 1 MEFAEKLITLRKSRELTQEQLAEQLNVSRQSISKWESGQVIPEVEKIVELSKVFDVTVDY 60 Query: 172 IYFGDEV----IVPKSIKRAKGNQSSKKSKKDKKSSN 204 + E+ + + +++ + ++ K+ + S N Sbjct: 61 LLKPSEIDELSVKTEILEQQQKQMLVREQKRTQISKN 97 >gi|163789807|ref|ZP_02184244.1| possible transcriptional regulator [Carnobacterium sp. AT7] gi|159875029|gb|EDP69096.1| possible transcriptional regulator [Carnobacterium sp. AT7] Length = 104 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R TQ+E+A + ++ +ENG I + + Y IS D + G+ Sbjct: 6 RLKQRRNTLKMTQEEVAEKIHVSRQTISNWENGRNLPDINSLILISEIYAISLDKLMKGD 65 Query: 95 VIDRRYEDVTNKKRLDPYAIGARL 118 + D K+ Y + + Sbjct: 66 PKMVKKLDEKIKRGKFFYFLVIVI 89 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 38/77 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK R M+Q E + + + T+SN+E GR +P+I I ++ LD Sbjct: 1 MKLETRLKQRRNTLKMTQEEVAEKIHVSRQTISNWENGRNLPDINSLILISEIYAISLDK 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + GD +V K ++ K Sbjct: 61 LMKGDPKMVKKLDEKIK 77 >gi|118472418|ref|YP_885545.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118173705|gb|ABK74601.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 201 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+RI+ +RK T + +A A ++ E G + S + L + ++ + Sbjct: 19 DLGSRIRMLRKERQLTTERLAETAGVSAGLISQIERGNGNPSFATLVQLAHGLQMPIGQL 78 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + ++RLD + + Sbjct: 79 LEAPESKSVVVRKNERRRLDGHGLAN 104 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R++ +RK++ ++ + G+ +S E+G P ++ + + + Sbjct: 22 SRIRMLRKERQLTTERLAETAGVSAGLISQIERGNGNPSFATLVQLAHGLQMPIGQLL-- 79 Query: 176 DEVIVPKSIKRAKGNQ 191 E KS+ K + Sbjct: 80 -EAPESKSVVVRKNER 94 >gi|15925695|ref|NP_373229.1| hypothetical protein SAV2705 [Staphylococcus aureus subsp. aureus Mu50] gi|15928290|ref|NP_375823.1| hypothetical protein SA2495 [Staphylococcus aureus subsp. aureus N315] gi|148269137|ref|YP_001248080.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150395219|ref|YP_001317894.1| hypothetical protein SaurJH1_2785 [Staphylococcus aureus subsp. aureus JH1] gi|156981020|ref|YP_001443279.1| hypothetical protein SAHV_2689 [Staphylococcus aureus subsp. aureus Mu3] gi|253316707|ref|ZP_04839920.1| hypothetical protein SauraC_11280 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255007477|ref|ZP_05146078.2| hypothetical protein SauraM_13430 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793530|ref|ZP_05642509.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258411164|ref|ZP_05681443.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258420931|ref|ZP_05683865.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|258438571|ref|ZP_05689794.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258443973|ref|ZP_05692311.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446210|ref|ZP_05694370.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258449131|ref|ZP_05697237.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258454391|ref|ZP_05702359.1| transcriptional regulator [Staphylococcus aureus A5937] gi|269204343|ref|YP_003283612.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED98] gi|282894270|ref|ZP_06302500.1| hypothetical protein SGAG_01620 [Staphylococcus aureus A8117] gi|282927741|ref|ZP_06335355.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295406854|ref|ZP_06816658.1| hypothetical protein SMAG_02027 [Staphylococcus aureus A8819] gi|297245889|ref|ZP_06929751.1| hypothetical protein SLAG_01983 [Staphylococcus aureus A8796] gi|13702662|dbj|BAB43802.1| SA2495 [Staphylococcus aureus subsp. aureus N315] gi|14248480|dbj|BAB58867.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147742206|gb|ABQ50504.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149947671|gb|ABR53607.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|156723155|dbj|BAF79572.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257787502|gb|EEV25842.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840049|gb|EEV64514.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257843121|gb|EEV67536.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|257848130|gb|EEV72122.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257850857|gb|EEV74801.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257855036|gb|EEV77979.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257857564|gb|EEV80459.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257863485|gb|EEV86245.1| transcriptional regulator [Staphylococcus aureus A5937] gi|262076633|gb|ACY12606.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED98] gi|282590501|gb|EFB95579.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282763315|gb|EFC03445.1| hypothetical protein SGAG_01620 [Staphylococcus aureus A8117] gi|285818368|gb|ADC38855.1| Transcriptional regulator [Staphylococcus aureus 04-02981] gi|294968319|gb|EFG44344.1| hypothetical protein SMAG_02027 [Staphylococcus aureus A8819] gi|297177254|gb|EFH36507.1| hypothetical protein SLAG_01983 [Staphylococcus aureus A8796] gi|312831044|emb|CBX35886.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129534|gb|EFT85526.1| hypothetical protein CGSSa03_11146 [Staphylococcus aureus subsp. aureus CGS03] gi|329725645|gb|EGG62124.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 189 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R+ + +Q+ +A +++ +EN I L + + ++ D + Sbjct: 2 NLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D+ ++ L+ + + Sbjct: 62 VKG--TIPFVPDIKVQRSLNLWTYVMLI 87 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + L + ++SN+E +++P+I + ++ LD Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + G VP + N Sbjct: 61 LVKGTIPFVPDIKVQRSLN 79 >gi|229173997|ref|ZP_04301534.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3] gi|228609506|gb|EEK66791.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3] Length = 374 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDKL 64 Query: 91 YDGEVIDRRY 100 + Sbjct: 65 ICYTPQMEQE 74 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + ++I+ Sbjct: 61 IDKLICYTPQMEQEAIRE 78 >gi|225378376|ref|ZP_03755597.1| hypothetical protein ROSEINA2194_04037 [Roseburia inulinivorans DSM 16841] gi|225209813|gb|EEG92167.1| hypothetical protein ROSEINA2194_04037 [Roseburia inulinivorans DSM 16841] Length = 118 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +K++GTRIK RK Q E+A + ++ ENG S+ + + Sbjct: 1 MEFQYKEMGTRIKVRRKELKIKQAELAEALEISNNHMSSTENGRQKPSLDTFIGICRCLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKK 107 ++ D++ G + + K Sbjct: 61 VTPDYLLLGTMHAYNIPQDISDK 83 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +G R+K RK+ + Q E + L + N+ +S+ E GR P + I + Sbjct: 1 MEFQYKEMGTRIKVRRKELKIKQAELAEALEISNNHMSSTENGRQKPSLDTFIGICRCLN 60 Query: 167 KHLDWIYFG 175 D++ G Sbjct: 61 VTPDYLLLG 69 >gi|261343818|ref|ZP_05971463.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282568202|gb|EFB73737.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 103 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRIK+ RK + +A N + ++ +ENG+ I + L + + +W + Sbjct: 7 IGTRIKNRRKELGLSGANLASKLNLSQQQISRYENGINKIPIDHLLDIADILMCPIEWFF 66 Query: 92 DGEVIDRRYEDVTNK 106 G + + Sbjct: 67 KGYKNEDNDNEQVPF 81 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 6/92 (6%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-- 175 +K+ RK+ G+S L + +S YE G I I + ++W + G Sbjct: 11 IKNRRKELGLSGANLASKLNLSQQQISRYENGINKIPIDHLLDIADILMCPIEWFFKGYK 70 Query: 176 ----DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 D VP I + +++ K Sbjct: 71 NEDNDNEQVPFDITNKELQYAAESVIVSTKHQ 102 >gi|269797322|ref|YP_003311222.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269093951|gb|ACZ23942.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 290 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D ++++ RK + +Q ++A N A+ +E+G I L + +S D + Sbjct: 2 DFNEKLREYRKQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 E + RY + + +K Sbjct: 62 LSEEAVKPRYPYESIVEYDIDEIKHFDIK 90 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ RK G+SQ + + L + ++ +E G +P+I + + V +D Sbjct: 1 MDFNEKLREYRKQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVDE 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLSEE 65 >gi|223983505|ref|ZP_03633690.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] gi|223964500|gb|EEF68827.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] Length = 270 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ RK +Q+++A N AV+ +E+G + + L IS D + Sbjct: 2 NFAQKLQKRRKEVGFSQEQLAFELNVSRQAVSKWESGQGYPEVEKLIQLSELLGISLDEL 61 Query: 91 YD 92 Sbjct: 62 MK 63 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ RK+ G SQ + L + +S +E G+ PE++ ++ ++ LD Sbjct: 1 MNFAQKLQKRRKEVGFSQEQLAFELNVSRQAVSKWESGQGYPEVEKLIQLSELLGISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + IK + + + Sbjct: 61 LMKETREHPSAPIKPLDEEEQEWRDE 86 >gi|218960459|ref|YP_001740234.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans] gi|167729116|emb|CAO80027.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans] Length = 240 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K IR+ Q ++A SA++ E+G + S+ L Y ++ W+ Sbjct: 2 IGERLKQIRQVLGIKQVDLAKVLKINPSAISQMESGRTNPSLETLSELVVNYNVNLHWLI 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + T+ + L Sbjct: 62 TGIGKMFNTANDTSSQNGSWDNFQKLL 88 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG RLK IR+ G+ Q++ K+L + S +S E GRT P ++ ++ +L W+ Sbjct: 1 MIGERLKQIRQVLGIKQVDLAKVLKINPSAISQMESGRTNPSLETLSELVVNYNVNLHWL 60 Query: 173 YFG 175 G Sbjct: 61 ITG 63 >gi|218904463|ref|YP_002452297.1| DNA-binding protein [Bacillus cereus AH820] gi|229122857|ref|ZP_04252066.1| hypothetical protein bcere0016_31490 [Bacillus cereus 95/8201] gi|218535175|gb|ACK87573.1| DNA-binding protein [Bacillus cereus AH820] gi|228660721|gb|EEL16352.1| hypothetical protein bcere0016_31490 [Bacillus cereus 95/8201] Length = 374 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 6 IHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 66 SYKPQMEQEDIKN 78 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEISIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKN 78 >gi|25011800|ref|NP_736195.1| hypothetical protein gbs1761 [Streptococcus agalactiae NEM316] gi|77413672|ref|ZP_00789856.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|24413341|emb|CAD47420.1| Unknown [Streptococcus agalactiae NEM316] gi|77160272|gb|EAO71399.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 197 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I RK +Q+E+A +++ +EN I L L +++S D + Sbjct: 2 EIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIYSLLLLSQIFQVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++SN+E +T P+I + Q+ + LD Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIYSLLLLSQIFQVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTK 86 >gi|328478348|gb|EGF48126.1| XRE family transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 112 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 35/86 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ ++ TQ ++ + ++ +ENG I + + + Y+IS D + Sbjct: 2 QFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + ++ + +K+ Sbjct: 62 LREDQDIVQHYETISKQAQRYQKYFQ 87 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ ++Q++ G L + T+S++E GR+ P+I I + + LD Sbjct: 1 MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ IV +K Q +K Sbjct: 61 LLREDQDIVQHYETISKQAQRYQK 84 >gi|291529971|emb|CBK95556.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 122 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK +RKA +Q ++A + A +L+E G L + + D + Sbjct: 14 ERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTDTDTLL 71 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A R+K +RK KG SQ + + LG+ S YE G+ P KI + D + Sbjct: 11 AFSERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTDTDTL 70 Query: 173 Y 173 Sbjct: 71 L 71 >gi|227519769|ref|ZP_03949818.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227072857|gb|EEI10820.1| transcriptional regulator [Enterococcus faecalis TX0104] Length = 183 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +K IR+ T E+A + ++ E G + +I + N + Sbjct: 2 EINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + + + + + Sbjct: 62 YTYLLEDDYVKENPVVKKTETVTQHSEDHSY 92 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR++K ++ E + G+ LS E+G T P I KI ++ Sbjct: 9 NNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYLLED 68 Query: 176 DEVIVPKSIKRAK 188 D V +K+ + Sbjct: 69 DYVKENPVVKKTE 81 >gi|325262674|ref|ZP_08129410.1| DNA-binding protein [Clostridium sp. D5] gi|324031768|gb|EGB93047.1| DNA-binding protein [Clostridium sp. D5] Length = 545 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I RKA TQKE+A AV+ +E G + L E+S D + Sbjct: 6 GQFIARRRKAIGLTQKELAEKLGVTNKAVSKWETGGGMPDVSVLETLAGVLEVSVDELLK 65 Query: 93 GEVIDRRYEDVTNK 106 GE + E + + Sbjct: 66 GERQADQTELMIPQ 79 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 6/79 (7%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + RK G++Q E + LG+ N +S +E G +P++ + V + +D + G Sbjct: 7 QFIARRRKAIGLTQKELAEKLGVTNKAVSKWETGGGMPDVSVLETLAGVLEVSVDELLKG 66 Query: 176 D------EVIVPKSIKRAK 188 + E+++P+ ++R K Sbjct: 67 ERQADQTELMIPQPVQRMK 85 >gi|146296429|ref|YP_001180200.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410005|gb|ABP67009.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 44/107 (41%), Gaps = 1/107 (0%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +K +G ++++ RK TQ+++A + ++ +ENG+ SI L + Y + Sbjct: 5 ELYKRIGQKLQEARKKAGLTQEQVADYLGINKVQLSYYENGVREISIGTLQQLADLYGYT 64 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI-RKDKGMSQIEF 132 ++ +D E + + + R + Q++ Sbjct: 65 LNYFFDDEKSTDPAVSFSFRGEELEKEDLEVIAMANRFLINLEQMKM 111 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +L+ RK G++Q + LG+ LS YE G I +++ + L+ Sbjct: 7 YKRIGQKLQEARKKAGLTQEQVADYLGINKVQLSYYENGVREISIGTLQQLADLYGYTLN 66 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + + ++ P +G + K+ Sbjct: 67 YFFDDEKSTDPAVSFSFRGEELEKE 91 >gi|325066629|ref|ZP_08125302.1| transcriptional regulator [Actinomyces oris K20] Length = 62 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ +R+A TQ ++ +VN E G S+ A+ + +E + + I+ Sbjct: 5 VRGLREARGLTQAQLGAALGVSRQSVNSIEKGKYDPSLPLAIAIARYFETTVEEIFH 61 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 33/58 (56%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R+ +G++Q + G LG+ ++++ E+G+ P + A I + + ++ I+ Sbjct: 3 NDVRGLREARGLTQAQLGAALGVSRQSVNSIEKGKYDPSLPLAIAIARYFETTVEEIF 60 >gi|256397682|ref|YP_003119246.1| helix-turn-helix domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256363908|gb|ACU77405.1| helix-turn-helix domain protein [Catenulispora acidiphila DSM 44928] Length = 195 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 10/158 (6%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R + + +G ++ R +Q +A G A++ +E ++ + + E Sbjct: 10 ERAFARIIGG-LRSARLDAGLSQNALAAGMPVRGRAISEWETRAVEPTLGHLIQWARELG 68 Query: 85 -----ISFD-WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + D + G R + + + L++ R GM+Q E G L+G+ Sbjct: 69 RRLVIVGRDGELRVG---PVRQRPGETFEIFERRRLAVPLRNRRLALGMAQGELGALVGV 125 Query: 139 PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ +E R P Q LD + D Sbjct: 126 SRDSIQRWELVRVPPRPIAHVVWAQKLGCSLDILVVPD 163 >gi|160933365|ref|ZP_02080753.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753] gi|156867242|gb|EDO60614.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753] Length = 194 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+ IK +R+ TQ ++A + ++ +E G I L ++S + Sbjct: 7 GSTIKSLREKQRLTQSQLAEKLCVSDKTISKWETGRGFPDISLLKPLACALQVSIPELLS 66 Query: 93 GEVIDRRYED 102 GE I Sbjct: 67 GEQIVNTNRS 76 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 40/71 (56%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ Y G+ +KS+R+ + ++Q + + L + + T+S +E GR P+I + + + Sbjct: 1 MNHYVTGSTIKSLREKQRLTQSQLAEKLCVSDKTISKWETGRGFPDISLLKPLACALQVS 60 Query: 169 LDWIYFGDEVI 179 + + G++++ Sbjct: 61 IPELLSGEQIV 71 >gi|229119313|ref|ZP_04248616.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] gi|228664179|gb|EEL19717.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] Length = 228 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K VG +IK+ RK TQKE+ + + + ++ +ENG + + Sbjct: 2 KQDVSKYVGQQIKNFRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDVLFAIAQALD 61 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 IS + ++ + T Sbjct: 62 ISINDLFPPTNEVYKTNTPT 81 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++K+ RK K M+Q E G +G ++T+S+YE G PE I Q ++ + Sbjct: 8 YVGQQIKNFRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDVLFAIAQALDISINDL 67 Query: 173 Y 173 + Sbjct: 68 F 68 >gi|325291680|ref|YP_004277544.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059533|gb|ADY63224.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 197 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%) Query: 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 Y+ ++ E + +G RIK +R N T +A + + ++ E G S + Sbjct: 2 YSRMMENEDHILERSIGDRIKTLRAQNGLTLDRLAAESGVSRAMISRIERGEASPTASLL 61 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + +S + + ++L Sbjct: 62 ARICAALGLSLSGFFAEDEEAVSPLVKKRDQQL 94 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 35/93 (37%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + N+ + +IG R+K++R G++ G+ + +S E+G P Sbjct: 1 MYSRMMENEDHILERSIGDRIKTLRAQNGLTLDRLAAESGVSRAMISRIERGEASPTASL 60 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGN 190 +I L + DE V +K+ Sbjct: 61 LARICAALGLSLSGFFAEDEEAVSPLVKKRDQQ 93 >gi|302388982|ref|YP_003824803.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302199610|gb|ADL07180.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 135 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G R++++RK +++E+A SA+ +E + + + ++++ D++ Sbjct: 2 DFGERLQELRKEKGISREELARALQVSYSAIAKYETNVRKPDQETLKKIADYFDVTVDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + R+ Sbjct: 62 LGRSNHRQLTRRDERDIEKIIEETRHRI 89 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RL+ +RK+KG+S+ E + L + S ++ YE P+ + +KI +D+ Sbjct: 1 MDFGERLQELRKEKGISREELARALQVSYSAIAKYETNVRKPDQETLKKIADYFDVTVDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|325661078|ref|ZP_08149705.1| hypothetical protein HMPREF0490_00438 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085193|ref|ZP_08334279.1| hypothetical protein HMPREF0987_00582 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472585|gb|EGC75796.1| hypothetical protein HMPREF0490_00438 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407976|gb|EGG87466.1| hypothetical protein HMPREF0987_00582 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 195 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK R+ +Q+E+A+ ++ +E ++ + L N + +S D Sbjct: 2 DIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLISLSNIFNVSLDNF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + R + L + Sbjct: 62 IKEDIKEMREIVEKTTIKKFNVISVVFLIEL 92 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 34/71 (47%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++K R+ + +SQ E + + T+SN+E ++ P++K + + LD D Sbjct: 6 QIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLISLSNIFNVSLDNFIKED 65 Query: 177 EVIVPKSIKRA 187 + + +++ Sbjct: 66 IKEMREIVEKT 76 >gi|282849276|ref|ZP_06258661.1| DNA-binding protein [Veillonella parvula ATCC 17745] gi|282580980|gb|EFB86378.1| DNA-binding protein [Veillonella parvula ATCC 17745] Length = 290 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D ++++ R + +Q ++A N A+ +E+G I L + +S D + Sbjct: 2 DFNEKLREYRTQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 E + RY + + +K Sbjct: 62 LSEEAVKPRYPYESIVEYDIDEIKHFDIK 90 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ R G+SQ + + L + ++ +E G +P+I + + V +D Sbjct: 1 MDFNEKLREYRTQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVDE 60 Query: 172 IYFGDEVIVPKSIKRA 187 + +E + P+ + Sbjct: 61 LLS-EEAVKPRYPYES 75 >gi|253680970|ref|ZP_04861773.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253562819|gb|EES92265.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 195 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + T+IK R N +Q+E+A ++ +EN IR L L + IS D + Sbjct: 2 QLHTQIKKYRTNLNLSQEELAEKVYVTRQTISNWENNKTYPDIRSLLLLSTLFNISLDQL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G++ + + ++ Sbjct: 62 IKGDIKTMQEKINKSE 77 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 41/83 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R + +SQ E + + + T+SN+E +T P+I+ + + LD Sbjct: 1 MQLHTQIKKYRTNLNLSQEELAEKVYVTRQTISNWENNKTYPDIRSLLLLSTLFNISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + I +++ + ++ Sbjct: 61 LIKGDIKTMQEKINKSELQKFNR 83 >gi|291536229|emb|CBL09341.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 98 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK +R+A++ TQ E+A N S+VN +E G+ S Y + L + +S D++ Sbjct: 2 IADKIKRLREASHLTQTELAKKLNITRSSVNAWEMGISVPSTTYLIELALLFHVSTDFLL 61 Query: 92 DGEVIDRRYEDVTNKKR 108 E + +++ Sbjct: 62 GLEQNNTIDISTLSERE 78 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 32/65 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I ++K +R+ ++Q E K L + S+++ +E G ++P ++ + D++ Sbjct: 1 MIADKIKRLREASHLTQTELAKKLNITRSSVNAWEMGISVPSTTYLIELALLFHVSTDFL 60 Query: 173 YFGDE 177 ++ Sbjct: 61 LGLEQ 65 >gi|238917513|ref|YP_002931030.1| hypothetical protein EUBELI_01592 [Eubacterium eligens ATCC 27750] gi|238872873|gb|ACR72583.1| Hypothetical protein EUBELI_01592 [Eubacterium eligens ATCC 27750] Length = 107 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 5/99 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++K +R A+ TQ+++A ++ ENG ++R Y +S D++ Sbjct: 4 DLGAKVKKLRIAHGLTQEDVAKALEVTPGYISNVENGRNLMTLRMLSYYAELTGVSLDYL 63 Query: 91 YDGEVIDRRYEDVTNK-----KRLDPYAIGARLKSIRKD 124 + + N+ ++LD + + ++R Sbjct: 64 AGSVDKSYQNTALDNEIMQIVQKLDVDSKEKLISTLRIW 102 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K +R G++Q + K L + +SN E GR + ++ ++T LD++ Sbjct: 7 AKVKKLRIAHGLTQEDVAKALEVTPGYISNVENGRNLMTLRMLSYYAELTGVSLDYLAGS 66 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + + Q +K D K Sbjct: 67 VDKSYQNTALDNEIMQIVQKLDVDSKEK 94 >gi|148261636|ref|YP_001235763.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326405126|ref|YP_004285208.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146403317|gb|ABQ31844.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325051988|dbj|BAJ82326.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 110 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 41/107 (38%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + P+ + + VG RI+ +R ANN TQ E A SA+ +E + Sbjct: 1 MAPKKQTPPESVGQRIRALRLANNLTQDEFAAQLGVSRSAIAQWETDRAGQVRENLERIS 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 S ++ GE + +++ + A R +R K + Sbjct: 61 KVLGTSIAYLVSGETGSLQGDELALMRLYRACAAEDRQILLRTAKRL 107 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + KK+ P ++G R++++R ++Q EF LG+ S ++ +E R + +I Sbjct: 1 MAPKKQTPPESVGQRIRALRLANNLTQDEFAAQLGVSRSAIAQWETDRAGQVRENLERIS 60 Query: 163 QVTKKHLDWIYFGD 176 +V + ++ G+ Sbjct: 61 KVLGTSIAYLVSGE 74 >gi|295108150|emb|CBL22103.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 110 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G R++ +R N +QKE+AI + +A++ +E + L Y+IS D++ Sbjct: 2 EFGNRLRKLRNQNGLSQKEVAIAISVSVNAISQYETNKRFPEPDVLVRLCKYYKISADYL 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RL+ +R G+SQ E + + + +S YE + PE ++ + K D+ Sbjct: 1 MEFGNRLRKLRNQNGLSQKEVAIAISVSVNAISQYETNKRFPEPDVLVRLCKYYKISADY 60 Query: 172 IY-FGDEVIVPKSIKRAKGNQSSKK 195 + ++ P++ N S++ Sbjct: 61 LLGLTEQQRSPQTTGEVLENTLSRE 85 >gi|281334739|gb|ADA61823.1| hypothetical protein SAP047A_004 [Staphylococcus aureus] Length = 113 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 7/95 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK+ R+ +Q+E+A V+ +E+ S+ + + + + IS + + Sbjct: 2 KLAEAIKEQRELKGWSQEELANILKVSRQNVSKWESAKNYPSLDILIAMSDLFGISLEHL 61 Query: 91 YDGEV-------IDRRYEDVTNKKRLDPYAIGARL 118 G+ E +D L Sbjct: 62 IKGDACFKKVILEGNYRESNRAPSIVDFLYDFWWL 96 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R+ KG SQ E +L + +S +E + P + + + L+ Sbjct: 1 MKLAEAIKEQRELKGWSQEELANILKVSRQNVSKWESAKNYPSLDILIAMSDLFGISLEH 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD K I +S++ Sbjct: 61 LIKGD-ACFKKVILEGNYRESNR 82 >gi|254975202|ref|ZP_05271674.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092592|ref|ZP_05322070.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255314329|ref|ZP_05355912.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517008|ref|ZP_05384684.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650110|ref|ZP_05397012.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683237|ref|YP_003214522.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686833|ref|YP_003217966.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209400|emb|CBA62866.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212849|emb|CBE04052.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 404 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RK N TQ+++A AV+ +E+G I L + + +S D + Sbjct: 4 KIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + + K L+ + Sbjct: 64 LNYKIDLSEEKVMKIYKELESGFARIEI 91 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 34/74 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++ +RK++ ++Q + K +G+ +S +E G + P+I+ + +D Sbjct: 2 QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSID 61 Query: 171 WIYFGDEVIVPKSI 184 + + + + Sbjct: 62 KLLNYKIDLSEEKV 75 >gi|126699176|ref|YP_001088073.1| putative transcriptional regulator [Clostridium difficile 630] gi|115250613|emb|CAJ68437.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 404 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RK N TQ+++A AV+ +E+G I L + + +S D + Sbjct: 4 KIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ E + K L+ + Sbjct: 64 LNYKIDLSEEEVMKIYKELESGFAKIEI 91 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 34/74 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++ +RK++ ++Q + K +G+ +S +E G + P+I+ + +D Sbjct: 2 QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSID 61 Query: 171 WIYFGDEVIVPKSI 184 + + + + Sbjct: 62 KLLNYKIDLSEEEV 75 >gi|253699290|ref|YP_003020479.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774140|gb|ACT16721.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 209 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +Y + G RIK R A TQKE A ++ ++ E G S + L + + I+ Sbjct: 5 EYHAETGVRIKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGIN 64 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 W++DG + E ++ ++ + + Sbjct: 65 AQWLHDGSGESFKNELAADQPKVSRAPLLDVI 96 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K R G++Q EF LG+ LS E GR P + + W++ G Sbjct: 14 IKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGINAQWLHDG 71 >gi|284031797|ref|YP_003381728.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811090|gb|ADB32929.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 198 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 31/79 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R+K +R+ T E+A S ++ E G+ ++ L L + ++ D + Sbjct: 12 VGARLKHLRQRRTITLVELADQTGISISTLSRLEAGLRRPTLEQLLPLARVHGVTLDELV 71 Query: 92 DGEVIDRRYEDVTNKKRLD 110 D + + D Sbjct: 72 DAPPTGNPRVTLRPIRADD 90 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+GARLK +R+ + ++ +E G+ STLS E G P ++ + +V LD + Sbjct: 11 AVGARLKHLRQRRTITLVELADQTGISISTLSRLEAGLRRPTLEQLLPLARVHGVTLDEL 70 Query: 173 Y 173 Sbjct: 71 V 71 >gi|330719160|ref|ZP_08313760.1| transcription regulator [Leuconostoc fallax KCTC 3537] Length = 134 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK +R N+ TQ ++A N +V +E G +I L L +S D + Sbjct: 3 ISNKIKQLRIENHLTQDQLAQKINVSRQSVLKWEAGTNYPNIENILALSEALNVSIDELI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 ++ + +K R + L Sbjct: 63 KTDLKLENKLIIDSKARKYHLLVMLFL 89 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 34/80 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K +R + ++Q + + + + ++ +E G P I+ + + +D Sbjct: 1 MHISNKIKQLRIENHLTQDQLAQKINVSRQSVLKWEAGTNYPNIENILALSEALNVSIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D + K I +K + Sbjct: 61 LIKTDLKLENKLIIDSKARK 80 >gi|302549850|ref|ZP_07302192.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302467468|gb|EFL30561.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 190 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Q VG R++ +RK T ++ S ++ E+G+ S+ L + ++ Sbjct: 3 TDQVLAGVGPRLRQMRKEREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIARAHQ 62 Query: 85 ISFDWIY 91 ++ D + Sbjct: 63 VALDELV 69 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+ +RK++ ++ + G+ STLS E G P ++ I + + LD + Sbjct: 14 LRQMRKEREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIARAHQVALDELVGAPS 73 Query: 175 -GDEVIVPKSI 184 GD + K I Sbjct: 74 AGDPRVRSKPI 84 >gi|257065055|ref|YP_003144727.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792708|gb|ACV23378.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 338 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R + M+Q + ++G+ +++ +E R PE+ KI Q+ +D Sbjct: 1 MSFRDNLQYLRSTRSMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKISQIFDCTIDE 60 Query: 172 IYFGDEVIVPKSIKRA 187 + GD ++A Sbjct: 61 LVQGDLTHRDIQPEKA 76 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R + TQ+++A+ +V +E+ + L + ++ + D + G Sbjct: 5 DNLQYLRSTRSMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKISQIFDCTIDELVQG 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 D + D+ +K + + Sbjct: 65 ---DLTHRDIQPEKAMPVDMSSDSI 86 >gi|111025296|ref|YP_707716.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110824275|gb|ABG99558.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 254 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G +K R + +++A S ++ ENG S++ L E+S D Sbjct: 35 EEIGVALKRARLDKKLSLRQVADQLGISTSLLSQVENGKTQPSVKTLFGLATVLEVSLDK 94 Query: 90 IYDG 93 I G Sbjct: 95 ILSG 98 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK R DK +S + LG+ S LS E G+T P +K + V + LD I G Sbjct: 41 LKRARLDKKLSLRQVADQLGISTSLLSQVENGKTQPSVKTLFGLATVLEVSLDKILSG 98 >gi|295101547|emb|CBK99092.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 102 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 8/105 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + IRK ++ TQ+E+A A +E+G L L + S D++ Sbjct: 2 ENLTIIRKESHATQQEVADYLGISRQAYGNYESGKREPDYETLLKLGEYFNCSIDYLLGS 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 R ++ L L+ R Q KLL + Sbjct: 62 SRGVRYPLLSEFERNL--------LEQYRSATPAIQSAVCKLLDL 98 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L IRK+ +Q E LG+ NYE G+ P+ + K+ + +D++ Sbjct: 1 MENLTIIRKESHATQQEVADYLGISRQAYGNYESGKREPDYETLLKLGEYFNCSIDYLL 59 >gi|239626415|ref|ZP_04669446.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516561|gb|EEQ56427.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 146 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K+IR N TQ EMA + AV+ +ENG + +I + +++S + + Sbjct: 7 LKNIRVKNKLTQDEMAERLSVTRQAVSRWENGDSTPNIETLKQISIAFDVSINTLL 62 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK+IR ++Q E + L + +S +E G + P I+ ++I ++ Sbjct: 1 MDTKDVLKNIRVKNKLTQDEMAERLSVTRQAVSRWENGDSTPNIETLKQISIAFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|183601514|ref|ZP_02962884.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp. lactis HN019] gi|219683947|ref|YP_002470330.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|241190987|ref|YP_002968381.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196393|ref|YP_002969948.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219120|gb|EDT89761.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp. lactis HN019] gi|219621597|gb|ACL29754.1| predicted transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|240249379|gb|ACS46319.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250947|gb|ACS47886.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793976|gb|ADG33511.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis V9] Length = 335 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 21/150 (14%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R ++N TQ+++A+ +V+ +E+ + L L + + +S D + G Sbjct: 5 DNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKAYPEMDKLLMLCDMFGVSLDDLVMG 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 +V + + + P A + + Q G YE+ Sbjct: 65 DVRNGIAMSANHVEDGLPKAPMPE----MEGSALPQDITG------------YEEHMRKF 108 Query: 154 EIKP---ARKIKQVTKKHLDWIYFGDEVIV 180 ++ I + + ++ D I+ Sbjct: 109 DLMIPTGVSAI--IFGVSIGNLFDSDNSIL 136 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L+ +R M+Q + L+G+ ++S +E + PE+ + + LD Sbjct: 1 MGFKDNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKAYPEMDKLLMLCDMFGVSLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVMGD 65 >gi|153011249|ref|YP_001372463.1| hypothetical protein Oant_3929 [Ochrobactrum anthropi ATCC 49188] gi|151563137|gb|ABS16634.1| protein of unknown function DUF955 [Ochrobactrum anthropi ATCC 49188] Length = 483 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 17 YTLIITPEIRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 T ++ E + + + G RI+ IR TQ MA S +NL E +++ Sbjct: 4 KTAVMGREDQVSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQ 63 Query: 75 YALYLRNEYEISFDWI 90 L L + Y++ D + Sbjct: 64 LLLKLASVYKLDLDSL 79 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++G++Q + LG+ S L+ E+ + ++ K+ V K LD + Sbjct: 25 IRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 79 >gi|170722756|ref|YP_001750444.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760759|gb|ACA74075.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 76 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + P GTRI+++R A +Q+ A + ++ E G + SI Sbjct: 1 MPAPPPSPALQHQFGTRIRELRVAMGMSQEAFADRCGFARTYMSRIETGGANPSINAIKV 60 Query: 79 LRNEYEISFDWIYDG 93 L + +S +++G Sbjct: 61 LADALGVSISALFEG 75 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + G R++ +R GMSQ F G + +S E G P I + + + Sbjct: 11 QHQFGTRIRELRVAMGMSQEAFADRCGFARTYMSRIETGGANPSINAIKVLADALGVSIS 70 Query: 171 WIYFG 175 ++ G Sbjct: 71 ALFEG 75 >gi|118445204|ref|YP_891173.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196047678|ref|ZP_03114883.1| transcriptional regulator [Bacillus cereus 03BB108] gi|118419765|gb|ABK88183.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196021503|gb|EDX60205.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 116 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 40/90 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK++RK + TQ+++ + A++ FE G S + + + ++ D++ Sbjct: 2 IGEKIKELRKNSKMTQEQLGDAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E+ + I A ++S+ Sbjct: 62 GRSEDPELNEEEDKTVSEEGKNILAIIESL 91 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 36/82 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++K +RK+ M+Q + G +G+ +S +E+G+ P + KI D++ Sbjct: 1 MIGEKIKELRKNSKMTQEQLGDAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSK 194 E + ++ K Sbjct: 61 LGRSEDPELNEEEDKTVSEEGK 82 >gi|319651012|ref|ZP_08005147.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2] gi|317397368|gb|EFV78071.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2] Length = 149 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 126 GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 G SQ + + L + ++S +E G+ P I+ K+ + +D + DE + K IK Sbjct: 15 GWSQEDLAEKLFVSRQSVSKWENGQNYPSIEIIIKLSDLFGVTIDELLRSDEELTEKVIK 74 Query: 186 RAK 188 ++ Sbjct: 75 DSR 77 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%) Query: 44 NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 +Q+++A +V+ +ENG SI + L + + ++ D + + Sbjct: 15 GWSQEDLAEKLFVSRQSVSKWENGQNYPSIEIIIKLSDLFGVTIDELLRSDEE 67 >gi|317120863|ref|YP_004100866.1| hypothetical protein Tmar_0014 [Thermaerobacter marianensis DSM 12885] gi|315590843|gb|ADU50139.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 131 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R++ +R+A TQ+E+A A+ L+E G + L + S ++ Sbjct: 2 QFADRLRKMREARGLTQRELATAIGVSRQAIGLYEAGEREPDLTTIQKLAHVLRTSISYL 61 Query: 91 YDGEVIDRRYED 102 GE D Sbjct: 62 V-GETDDPSPLP 72 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL+ +R+ +G++Q E +G+ + YE G P++ +K+ V + + + Sbjct: 1 MQFADRLRKMREARGLTQRELATAIGVSRQAIGLYEAGEREPDLTTIQKLAHVLRTSISY 60 Query: 172 IYFGDEVIVP 181 + + P Sbjct: 61 LVGETDDPSP 70 >gi|222530426|ref|YP_002574308.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457273|gb|ACM61535.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 122 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 1/107 (0%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +K +G ++++ RK TQ+++A + ++ +ENG SI L + Y + Sbjct: 5 ELYKKIGQKLQEARKKAGLTQEQVADYLGVNKVQLSYYENGAREISIETLQQLADLYGYT 64 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI-RKDKGMSQIEF 132 ++ D E + + + R + Q++ Sbjct: 65 LNYFLDDEKSTDPAVSFSFRGEELEKEDLEVIALANRFLINLEQMKM 111 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +L+ RK G++Q + LG+ LS YE G I+ +++ + L+ Sbjct: 7 YKKIGQKLQEARKKAGLTQEQVADYLGVNKVQLSYYENGAREISIETLQQLADLYGYTLN 66 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + ++ P +G + K+ Sbjct: 67 YFLDDEKSTDPAVSFSFRGEELEKE 91 >gi|290474343|ref|YP_003467222.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] gi|289173655|emb|CBJ80435.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] Length = 121 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 36/89 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K R++++R+ +Q E+ A + + FE G L + +++ D+ Sbjct: 7 KKFAQRLRELRRQKGLSQSELGKLAELHYTHIGRFERGTSRPGSDTLKRLADVLDVTSDY 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +G D +++ L + +L Sbjct: 67 LLEGAETDAAKARFEDRELLRQFQAVEQL 95 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ +R+ KG+SQ E GKL + + + +E+G + P +++ V D++ Sbjct: 9 FAQRLRELRRQKGLSQSELGKLAELHYTHIGRFERGTSRPGSDTLKRLADVLDVTSDYLL 68 Query: 174 FGDEVIVPK 182 G E K Sbjct: 69 EGAETDAAK 77 >gi|282601042|ref|ZP_05980519.2| DNA-binding protein [Subdoligranulum variabile DSM 15176] gi|282570426|gb|EFB75961.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] Length = 269 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 16/152 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K IRK+ +Q+E+A+ N + ++ +E G+ + + E + Sbjct: 102 LSQNLKTIRKSKGLSQQELAVKLNVVRQTISKWEQGLSVPDSEMLISISEVLETPVSILL 161 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS---IRKDKGMSQIEFGKLLG----MPNSTLS 144 V+ + + + RK S I ++ + S Sbjct: 162 GENVVLPEADTLKAISEKLEVINLQMAQKKNTRRKIIHWSLIGLCAIIMAIFVVLYFWKS 221 Query: 145 NYEQGRTIPEIKPARKIKQVTKK---HLDWIY 173 Y+ + + A V L+W++ Sbjct: 222 PYQAWNYA-DPETA-----VLGVAFHSLEWLF 247 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + LK+IRK KG+SQ E L + T+S +EQG ++P+ + I +V + + I Sbjct: 101 MLSQNLKTIRKSKGLSQQELAVKLNVVRQTISKWEQGLSVPDSEMLISISEVLETPVS-I 159 Query: 173 YFGDEVIVPK 182 G+ V++P+ Sbjct: 160 LLGENVVLPE 169 >gi|168217416|ref|ZP_02643041.1| transcriptional regulator [Clostridium perfringens NCTC 8239] gi|182380504|gb|EDT77983.1| transcriptional regulator [Clostridium perfringens NCTC 8239] Length = 141 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++K++RK N +Q+++A N A++ +E+G I + LR + +S D Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIENLILLRKIFGVSLD 59 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK +RK+K +SQ + K L + +S +E G+ P+I+ ++++ LD Sbjct: 1 MGFNNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIENLILLRKIFGVSLD 59 >gi|328464227|gb|EGF35672.1| transcriptional regulator xre family protein [Lactobacillus rhamnosus MTCC 5462] Length = 236 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I RK TQ+ +A +++V+ +E G I L +++S D + Sbjct: 4 NVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDQL 63 Query: 91 YDGEVI 96 + Sbjct: 64 MAYDAQ 69 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A + + RK KG++Q +G+ +++S +E G++ P+I + +D + Sbjct: 7 AVISAFRKQKGVTQEALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSIDQLMAY 66 Query: 176 DEVIVPKSIKR 186 D + P I+R Sbjct: 67 DAQLQPSEIRR 77 >gi|255067367|ref|ZP_05319222.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC 29256] gi|255048337|gb|EET43801.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC 29256] Length = 218 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 1/74 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K +G RI+ RK TQ+E+A + A++ +E+ + L Sbjct: 2 NKTIGQRIRQKRKEFKWTQQELAKKLKDISHVAISQWESNTTKPNAENLYELSQVLGCDL 61 Query: 88 DWIYDGEVIDRRYE 101 W+ GE D Sbjct: 62 GWLLKGEGEDTNTN 75 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ RK+ +Q E K L + + +S +E T P + ++ QV L W+ Sbjct: 7 QRIRQKRKEFKWTQQELAKKLKDISHVAISQWESNTTKPNAENLYELSQVLGCDLGWLLK 66 Query: 175 GDEVIVPKSIKRAKGNQSSK 194 G+ ++ + + + K Sbjct: 67 GEGEDTNTNVVFIEDSNNRK 86 >gi|167841007|ref|ZP_02467691.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 194 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +I+ +R T +++ A +S ++ E + +I A L N IS D Sbjct: 11 PRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDE 70 Query: 90 IYDGEVIDRRYEDVTNK 106 ++ Sbjct: 71 LFAQPKAPETIRVDGPH 87 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 15 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFA- 73 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 74 -QPKAPETIR 82 >gi|83716369|ref|YP_438206.1| DNA-binding protein [Burkholderia thailandensis E264] gi|167579250|ref|ZP_02372124.1| DNA-binding protein [Burkholderia thailandensis TXDOH] gi|167614637|ref|ZP_02383272.1| DNA-binding protein [Burkholderia thailandensis Bt4] gi|257141225|ref|ZP_05589487.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83650194|gb|ABC34258.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 202 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +I+ +R T +++ A +S ++ E + +I A L N IS D Sbjct: 23 PRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDE 82 Query: 90 IYDGEVIDRRYEDVTNK 106 ++ Sbjct: 83 LFAQPKAPETIRVDGPH 99 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 27 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFA- 85 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 86 -QPKAPETIR 94 >gi|125974048|ref|YP_001037958.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714273|gb|ABN52765.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 374 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I +R+ TQ+++A +++V+ +E G I + L + IS D + Sbjct: 5 NIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDEL 64 Query: 91 YDGEVIDRRYE 101 E + + Sbjct: 65 MGYEPQMSKED 75 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 40/78 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + +R++KG++Q + +G+ +++S +E G++ P+I ++ + Sbjct: 1 MKEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + + I++ Sbjct: 61 IDELMGYEPQMSKEDIRK 78 >gi|291548789|emb|CBL25051.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 294 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK RK +Q+EMA+ N + V+ +E G+ + + N ++S + Sbjct: 2 INENIKHFRKTRGMSQEEMAVKLNVVRQTVSKWEKGLSIPDADVLIEMANLLDVSVSQLL 61 Query: 92 DGEV 95 E Sbjct: 62 GIEE 65 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I +K RK +GMSQ E L + T+S +E+G +IP+ ++ + + + Sbjct: 1 MINENIKHFRKTRGMSQEEMAVKLNVVRQTVSKWEKGLSIPDADVLIEMANLLDVSVSQL 60 Query: 173 YFGDEVIVPK---SIKRAKGNQSSKKSKKDKK 201 +E I + + A+ N+ + K+ +K Sbjct: 61 LGIEESIHSNGNLAEELAELNEQLARKKQKEK 92 >gi|299820781|ref|ZP_07052670.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|299817802|gb|EFI85037.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] Length = 111 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K +G +I+ R+ N +Q+++A V+ +ENG S L + S Sbjct: 2 ELNKYIGNKIRFFREENGYSQEKLAQLLRTSRQTVSRYENGDRKASQDVLYELAQLFGKS 61 Query: 87 FDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSI 121 D + ID ++ +D L+ I Sbjct: 62 MDDFFPPREIDPPNKNGLTIAAHIDDDVTEEELRDI 97 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +++ R++ G SQ + +LL T+S YE G ++ Q+ K +D Sbjct: 4 NKYIGNKIRFFREENGYSQEKLAQLLRTSRQTVSRYENGDRKASQDVLYELAQLFGKSMD 63 Query: 171 WIYFGDEVIVP 181 + E+ P Sbjct: 64 DFFPPREIDPP 74 >gi|253988423|ref|YP_003039779.1| phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988445|ref|YP_003039801.1| hypothetical protein PAU_00964 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638950|emb|CAR67565.1| similar to unknown protein of bacteriophage (similar to phag transcriptional repressor) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779873|emb|CAQ83034.1| putative phage regulatory protein [Photorhabdus asymbiotica] gi|253779895|emb|CAQ83056.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 130 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 6/124 (4%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 + + ++K++G RI RK TQ+++A + + +E G S Sbjct: 5 THRQIQAMKTKDETFFKELGARIALARKEQQLTQQQLADQLGIAQQTMAHYEGGRLKVSA 64 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 L +S D + + R + + + I ++L R Q Sbjct: 65 ALLPLLAQILNLSLDELLGLPSVRRNSKRGPSSRLEQQIEIISQLPKAR------QKFVS 118 Query: 134 KLLG 137 ++L Sbjct: 119 EMLD 122 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 5/103 (4%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 R+ + + K +GAR+ RK++ ++Q + LG+ T+++YE GR Sbjct: 7 RQIQAMKTKDETFFKELGARIALARKEQQLTQQQLADQLGIAQQTMAHYEGGRLKVSAAL 66 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + Q+ LD + +P + +K SS+ ++ + Sbjct: 67 LPLLAQILNLSLDELLG-----LPSVRRNSKRGPSSRLEQQIE 104 >gi|198282281|ref|YP_002218602.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246802|gb|ACH82395.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 152 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + D+G R+K IRK TQ E+ A +SAV+ +ENG + LR I Sbjct: 3 DHMDDIGDRVKKIRKRLGLTQAELGKHAGGLSKSAVHQWENGGTKPAWDALTALRKNLGI 62 Query: 86 SFDWIYDGEVIDRRYEDVTN 105 + DW+ GE + N Sbjct: 63 NPDWVMQGEGAMLQELGTPN 82 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 108 RLDPYAIG-ARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 LD R+K IRK G++Q E GK G + S + +E G T P +++ Sbjct: 1 MLDHMDDIGDRVKKIRKRLGLTQAELGKHAGGLSKSAVHQWENGGTKPAWDALTALRKNL 60 Query: 166 KKHLDWIYFGDEVIVPK 182 + DW+ G+ ++ + Sbjct: 61 GINPDWVMQGEGAMLQE 77 >gi|325264752|ref|ZP_08131481.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030044|gb|EGB91330.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 130 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 27/76 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + RKA + TQKE+A N A + +E G + I L + Y I+ D + + Sbjct: 8 ANLARYRKARHMTQKELAKMLNISRQAYSNYETGKRTPDIDLLLKISQIYNITLDQLINQ 67 Query: 94 EVIDRRYEDVTNKKRL 109 Sbjct: 68 PFSPDGTIREQKGPYQ 83 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + A L RK + M+Q E K+L + SNYE G+ P+I KI Q+ Sbjct: 1 MANIQLVANLARYRKARHMTQKELAKMLNISRQAYSNYETGKRTPDIDLLLKISQIYNIT 60 Query: 169 LDWIY 173 LD + Sbjct: 61 LDQLI 65 >gi|293402337|ref|ZP_06646474.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304184|gb|EFE45436.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 286 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 49/99 (49%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 V ++ +D G + RK+K ++Q + + L + + +S +E G+++P+ ++ Sbjct: 1 MVKGERSMDQIKTGKFIARCRKEKKLTQAQLAERLSITDRAVSKWETGKSMPDSSIMLEL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ ++ + G++V + ++A N + K K + Sbjct: 61 CKLLGITVNELLSGEKVTMDSLERKADENLIALKRKDEN 99 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I RK TQ ++A + + AV+ +E G L L I+ + + Sbjct: 14 GKFIARCRKEKKLTQAQLAERLSITDRAVSKWETGKSMPDSSIMLELCKLLGITVNELLS 73 Query: 93 GEVIDRRYEDVTNKKRL 109 GE + + + L Sbjct: 74 GEKVTMDSLERKADENL 90 >gi|218462689|ref|ZP_03502780.1| probable transcriptional regulator protein, LacI family [Rhizobium etli Kim 5] Length = 189 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 32/96 (33%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +Q + +G RI+ +R T ++A + + ++ E S + + Sbjct: 2 EQQLEQAIGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALG 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 +S + E ++++ ++ Sbjct: 62 LSLSAFFAEEGQQASPLARRQEQQVWRDPETGYIRR 97 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R++++R +KG++ + G+ + +S E+ P +I L Sbjct: 8 AIGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAF 67 Query: 173 YFGDEVIVPKSIKRAKGN 190 + + +R + Sbjct: 68 FAEEGQQASPLARRQEQQ 85 >gi|94991134|ref|YP_599234.1| transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94544642|gb|ABF34690.1| Transcriptional regulator [Streptococcus pyogenes MGAS10270] Length = 195 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ RK +Q+E+A +++ +EN I L L +++S D + Sbjct: 2 EIGQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G++ +Y K+ + Sbjct: 62 IKGDIEKMKYTITQVDKKNFKRDTKVMI 89 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++SN+E +T P+I + Q+ + LD Sbjct: 1 MEIGQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFKRDTK 86 >gi|85711364|ref|ZP_01042423.1| putative DNA-binding protein [Idiomarina baltica OS145] gi|85694865|gb|EAQ32804.1| putative DNA-binding protein [Idiomarina baltica OS145] Length = 174 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 28/77 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ V R+K +RK + A ++ + E S ++ L + Sbjct: 1 MQNNHHTVARRLKKLRKDKGWSLTACAEHTGVSKAMLGQIERQESSPTLATLWKLATGFN 60 Query: 85 ISFDWIYDGEVIDRRYE 101 +S W+ + E ++ Sbjct: 61 VSLSWLLNDEQQPMTFD 77 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + + + + RLK +RKDKG S + G+ + L E+ + P + K+ Sbjct: 1 MQNNHHTVARRLKKLRKDKGWSLTACAEHTGVSKAMLGQIERQESSPTLATLWKLATGFN 60 Query: 167 KHLDWIYFGDEVIV 180 L W+ ++ + Sbjct: 61 VSLSWLLNDEQQPM 74 >gi|324993115|gb|EGC25035.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|324995581|gb|EGC27493.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] gi|327461381|gb|EGF07712.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] gi|327489239|gb|EGF21032.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] gi|332361469|gb|EGJ39273.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 94 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K IR+ +Q ++A ++ +EN + L + Y+IS D + Sbjct: 2 LGKQLKFIREQRGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +LK IR+ +G SQ + + LG T+SN+E +TI + ++ + LD + Sbjct: 1 MLGKQLKFIREQRGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|300908619|ref|ZP_07126082.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|300894026|gb|EFK87384.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 207 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 26/78 (33%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R TQ+++A ++ +EN I + + + Y +S D + Sbjct: 2 KFADKMKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + Sbjct: 62 LREDHEMINNYKEEHTMN 79 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K R KG +Q + + L + T+S++E R+ P+I +I + LD Sbjct: 1 MKFADKMKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D ++ + N+ K Sbjct: 61 LLREDHEMINNYKEEHTMNKRVDK 84 >gi|288818628|ref|YP_003432976.1| transcriptional regulator of molybdate metabolism [Hydrogenobacter thermophilus TK-6] gi|288788028|dbj|BAI69775.1| transcriptional regulator of molybdate metabolism [Hydrogenobacter thermophilus TK-6] gi|308752218|gb|ADO45701.1| transcriptional regulator of molybdate metabolism, XRE family [Hydrogenobacter thermophilus TK-6] Length = 336 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ R +Q+E+A S ++ E+G S+ YA+ L + + ++ Sbjct: 3 NKVKEYRLKRGLSQEELAKLCGMPRSTLSAIESGRAVPSVEYAIKLSKALGCTVEELFGE 62 Query: 94 EVI 96 E Sbjct: 63 EEK 65 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 39/67 (58%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K R +G+SQ E KL GMP STLS E GR +P ++ A K+ + ++ ++ Sbjct: 1 MNNKVKEYRLKRGLSQEELAKLCGMPRSTLSAIESGRAVPSVEYAIKLSKALGCTVEELF 60 Query: 174 FGDEVIV 180 +E ++ Sbjct: 61 GEEEKLI 67 >gi|153815957|ref|ZP_01968625.1| hypothetical protein RUMTOR_02202 [Ruminococcus torques ATCC 27756] gi|317500717|ref|ZP_07958935.1| hypothetical protein HMPREF1026_00878 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089807|ref|ZP_08338700.1| hypothetical protein HMPREF1025_02283 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846776|gb|EDK23694.1| hypothetical protein RUMTOR_02202 [Ruminococcus torques ATCC 27756] gi|316897911|gb|EFV19964.1| hypothetical protein HMPREF1026_00878 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403504|gb|EGG83062.1| hypothetical protein HMPREF1025_02283 [Lachnospiraceae bacterium 3_1_46FAA] Length = 106 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G ++K IR + N TQ+ +A A+ S ++ EN S+ + + N + + D Sbjct: 6 FEQIGEKLKKIRLSKNLTQEYIANAADVNTSHISNIENNRVKVSLSVLVQICNALDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTN 105 +I E D Sbjct: 66 YILSDEYNDSSSAIEQE 82 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L+ IG +LK IR K ++Q + S +SN E R + +I Sbjct: 1 MDTLNFEQIGEKLKKIRLSKNLTQEYIANAADVNTSHISNIENNRVKVSLSVLVQICNAL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKR 186 +D+I + +I++ Sbjct: 61 DTTVDYILSDEYNDSSSAIEQ 81 >gi|330863911|emb|CBX74000.1| uncharacterized HTH-type transcriptional regulator ydcN [Yersinia enterocolitica W22703] Length = 206 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 36/86 (41%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 +E K ++ ++++ + +G ++K++R+ + + A ++ + E Sbjct: 1 MEFDKKLCSIKSIATGVKMKELTRHIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIER 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYD 92 G S ++ + + +SF + Sbjct: 61 GESSPTVATLWKIASGLNVSFSQFLE 86 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +LK++R+++G S + + G+ + L E+G + P + KI Sbjct: 25 HIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQF 84 Query: 173 Y 173 Sbjct: 85 L 85 >gi|316941295|gb|ADU75329.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 374 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I +R+ TQ+++A +++V+ +E G I + L + IS D + Sbjct: 5 NIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDEL 64 Query: 91 YDGEVIDRRYE 101 E + + Sbjct: 65 MGYEPQMSKED 75 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 40/78 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + +R++KG++Q + +G+ +++S +E G++ P+I ++ + Sbjct: 1 MKEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + + I++ Sbjct: 61 IDELMGYEPQMSKEDIRK 78 >gi|168998508|ref|YP_001687776.1| putative regulatory protein [Staphylococcus aureus] Length = 113 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK+ R+ +Q+E+A +V+ +E+ S+ + + + + IS + + Sbjct: 2 KLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G+ ++ N + Sbjct: 62 IKGDARFKKVILEGNYRE 79 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R+ KG SQ E +L + ++S +E + P + + + L+ Sbjct: 1 MKLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEH 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD K I +S++ Sbjct: 61 LIKGD-ARFKKVILEGNYRESNR 82 >gi|306520117|ref|ZP_07406464.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 405 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RK N TQ+++A AV+ +E+G I L + + +S D + Sbjct: 4 KIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + + K L+ + Sbjct: 64 LNYKIDLSEEKVMKIYKELESGFARIEI 91 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 34/74 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++ +RK++ ++Q + K +G+ +S +E G + P+I+ + +D Sbjct: 2 QIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSID 61 Query: 171 WIYFGDEVIVPKSI 184 + + + + Sbjct: 62 KLLNYKIDLSEEKV 75 >gi|154497045|ref|ZP_02035741.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC 29799] gi|150273444|gb|EDN00572.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC 29799] Length = 94 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++RKA TQ+E+A V ENG + SI A + +E + + ++ Sbjct: 29 NRLEELRKARGMTQEELAEALEVSRQTVGSLENGRYNPSILLAFKIARLFETTIEEVFLY 88 Query: 94 EVI 96 E Sbjct: 89 EEQ 91 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+ +RK +GM+Q E + L + T+ + E GR P I A KI ++ + ++ ++ Sbjct: 28 KNRLEELRKARGMTQEELAEALEVSRQTVGSLENGRYNPSILLAFKIARLFETTIEEVFL 87 Query: 175 GDEVIVP 181 +E Sbjct: 88 YEEQGEE 94 >gi|146297213|ref|YP_001180984.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410789|gb|ABP67793.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 145 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K +G +I+ +R+ Q E+A + ++ + +ENG I L + + +++S Sbjct: 6 EILKYLGLQIRVLREWAGLKQTELAKKLHISQTTLARYENGELRPPIETLLRIADFFDVS 65 Query: 87 FDWIYDGEV--IDRRYEDVTNKKRLDPYAIGARLKSI 121 D + + D + + + + +K + Sbjct: 66 IDALLGRKNSHKDPLSILQELRIQKEQNVLENEIKEL 102 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R+ G+ Q E K L + +TL+ YE G P I+ +I +D + Sbjct: 14 QIRVLREWAGLKQTELAKKLHISQTTLARYENGELRPPIETLLRIADFFDVSIDALL 70 >gi|326329678|ref|ZP_08195999.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325952443|gb|EGD44462.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 185 Score = 73.8 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RI+ IR + T +++A A S ++ E+G S+ + L + D Sbjct: 6 KQVGPRIRAIRHSKGWTLEQLAAMAEMSPSTLSRLESGKRQASLELLIPLTRHLGVGLDS 65 Query: 90 IYDGEVID 97 + V D Sbjct: 66 LVTPSVPD 73 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +++IR KG + + + M STLS E G+ ++ + + LD + Sbjct: 12 IRAIRHSKGWTLEQLAAMAEMSPSTLSRLESGKRQASLELLIPLTRHLGVGLDSLVT 68 >gi|295098976|emb|CBK88065.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 70 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ N+ TQ ++A N + + +EN + + + L Y S D++ + Sbjct: 4 KRIRDLREDNDLTQADIAKYLNVTQRTYSRYENDDRAIPLEQLVKLAEYYNTSVDYLLNR 63 Query: 94 EVIDRRY 100 Y Sbjct: 64 TDKKEPY 70 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R+D ++Q + K L + T S YE ++ K+ + +D++ Sbjct: 1 MKLKRIRDLREDNDLTQADIAKYLNVTQRTYSRYENDDRAIPLEQLVKLAEYYNTSVDYL 60 Query: 173 YFGDEVIVP 181 + P Sbjct: 61 LNRTDKKEP 69 >gi|228934608|ref|ZP_04097442.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825001|gb|EEM70799.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 374 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 66 SYKPQMEQEDIKN 78 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEISIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKN 78 >gi|229156920|ref|ZP_04285001.1| hypothetical protein bcere0010_31040 [Bacillus cereus ATCC 4342] gi|228626410|gb|EEK83156.1| hypothetical protein bcere0010_31040 [Bacillus cereus ATCC 4342] Length = 374 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + +S D + Sbjct: 6 IHKIIADKRKEKGITQEELATYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDELI 65 Query: 92 DGEVIDRRYEDVT 104 + + Sbjct: 66 SYTPQMEQEDIKD 78 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIADKRKEKGITQEELATYIGITKASVSKWETGQSYPDITFLPLLASYFNVS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYTPQMEQEDIKD 78 >gi|255655594|ref|ZP_05401003.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296878842|ref|ZP_06902842.1| probable transcriptional regulator [Clostridium difficile NAP07] gi|296430114|gb|EFH15961.1| probable transcriptional regulator [Clostridium difficile NAP07] Length = 403 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RK N TQ+++A AV+ +E+G I L + + +S D + Sbjct: 4 KIGKIIQALRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKL 63 Query: 91 YDGEVI 96 + ++ Sbjct: 64 LNYKID 69 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 36/76 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++++RK++ ++Q + K +G+ +S +E G + P+I+ + +D Sbjct: 2 QIKIGKIIQALRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSID 61 Query: 171 WIYFGDEVIVPKSIKR 186 + + + + + Sbjct: 62 KLLNYKIDLSEEEVTK 77 >gi|239627852|ref|ZP_04670883.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239517998|gb|EEQ57864.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 146 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 30/83 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K VG RIK RK N TQK++ ++ E G S + + L + Sbjct: 1 MDNIDKMVGIRIKTRRKELNLTQKDVYAATGISNGNLSEIERGNVLPSSKALVSLSKLLQ 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKK 107 S DWI GE Sbjct: 61 TSIDWILTGEASIIDNSSPKTSN 83 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 41/84 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ RK+ ++Q + G+ N LS E+G +P K + ++ + +DWI G+ Sbjct: 12 IKTRRKELNLTQKDVYAATGISNGNLSEIERGNVLPSSKALVSLSKLLQTSIDWILTGEA 71 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 I+ S + + S K + ++ Sbjct: 72 SIIDNSSPKTSNIEYSLKLNESEE 95 >gi|218705070|ref|YP_002412589.1| transcriptional repressor DicA [Escherichia coli UMN026] gi|291283201|ref|YP_003500019.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|300895972|ref|ZP_07114540.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|301326444|ref|ZP_07219796.1| transcriptional repressor DicA [Escherichia coli MS 78-1] gi|218432167|emb|CAR13055.1| putative repressor protein of division inhibition from phage origin [Escherichia coli UMN026] gi|290763074|gb|ADD57035.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|300360122|gb|EFJ75992.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|300846860|gb|EFK74620.1| transcriptional repressor DicA [Escherichia coli MS 78-1] gi|320652127|gb|EFX20458.1| transcriptional repressor DicA [Escherichia coli O157:H- str. H 2687] gi|320657721|gb|EFX25510.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 152 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI++ RK +Q ++ A S+++L+E+ + + L + S W Sbjct: 21 KTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTW 80 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIG-ARLKSIRK-DKGMSQIEFGKL 135 I G+ V+ LD L+ R K Q + +L Sbjct: 81 ILFGDEDKTPAPPVSLDSALDLSEDELEMLRLYRALPKSEQQAQLSEL 128 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 37/74 (50%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 ++ +G R++ RK G+SQ K G+ S++S +E T P + ++ +V + Sbjct: 17 NMNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQC 76 Query: 168 HLDWIYFGDEVIVP 181 WI FGDE P Sbjct: 77 SPTWILFGDEDKTP 90 >gi|167571834|ref|ZP_02364708.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 200 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ +R T +++ A +S ++ E + +I A L N IS D ++ Sbjct: 23 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 82 Query: 92 DGEVIDRRYEDVTNK 106 Sbjct: 83 AQPKAPETIRVDGPH 97 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 25 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFA- 83 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 84 -QPKAPETIR 92 >gi|167564668|ref|ZP_02357584.1| DNA-binding protein [Burkholderia oklahomensis EO147] Length = 200 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ +R T +++ A +S ++ E + +I A L N IS D ++ Sbjct: 23 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 82 Query: 92 DGEVIDRRYEDVTNK 106 Sbjct: 83 AQPKAPETIRVDGPH 97 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 25 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFA- 83 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 84 -QPKAPETIR 92 >gi|32470379|ref|NP_863294.1| hypothetical protein MWP024 [Staphylococcus aureus] gi|49398102|ref|YP_031701.1| putative regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253730993|ref|ZP_04865158.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208875|ref|ZP_06925281.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913080|ref|ZP_07130516.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|21205830|dbj|BAB96521.1| truncated conserved hypothetical protein [Staphylococcus aureus] gi|49168433|emb|CAG43234.1| putative regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253725270|gb|EES93999.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|270055309|gb|ACZ58802.1| hypothetical protein SAP032A_013 [Staphylococcus aureus] gi|270055397|gb|ACZ58890.1| hypothetical protein SAP037A_010 [Staphylococcus aureus] gi|270269036|gb|ACZ66028.1| hypothetical protein SAP111A_016 [Staphylococcus aureus] gi|270269153|gb|ACZ66145.1| hypothetical protein SAP043A_012 [Staphylococcus aureus] gi|270299957|gb|ACZ68763.1| hypothetical protein SAP072A_021 [Staphylococcus aureus] gi|281334960|gb|ADA62044.1| hypothetical protein SAP053A_001 [Staphylococcus aureus] gi|296886493|gb|EFH25420.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885633|gb|EFK80842.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|302334349|gb|ADL24541.1| putative bacteriophage CI repressor [Staphylococcus aureus subsp. aureus JKD6159] gi|304388021|gb|ADM29122.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] Length = 113 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK+ R+ +Q+E+A +V+ +E+ S+ + + + + IS + + Sbjct: 2 KLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G+ ++ N + Sbjct: 62 IKGDARFKKVILEGNYRE 79 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R+ KG SQ E +L + ++S +E + P + + + L+ Sbjct: 1 MKLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEH 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD K I +S++ Sbjct: 61 LIKGD-ARFKKVILEGNYRESNR 82 >gi|322378166|ref|ZP_08052651.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321280896|gb|EFX57911.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 110 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +RK TQK++A N + A FE+G ++ L + + +S D++ Sbjct: 2 IIERLKKLRKEGKLTQKDIAAFLNISQPAYQQFESGKKKMNLETMKKLADFFNVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIG 115 +V +D Sbjct: 62 GKTDFPDLDLEVDIDTAIDNSVAY 85 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RLK +RK+ ++Q + L + +E G+ ++ +K+ D++ Sbjct: 1 MIIERLKKLRKEGKLTQKDIAAFLNISQPAYQQFESGKKKMNLETMKKLADFFNVSTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|238922230|ref|YP_002935744.1| hypothetical protein EUBELI_20465 [Eubacterium eligens ATCC 27750] gi|238873902|gb|ACR73610.1| Hypothetical protein EUBELI_20465 [Eubacterium eligens ATCC 27750] Length = 110 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G ++K+IR + Q +A A S ++ EN S+ +Y+ N ++ D Sbjct: 10 FESIGKKLKEIRLSKGLPQDAVASVAEVNTSHISNIENNRVKVSLPTLIYICNALGVTVD 69 Query: 89 WIYDGEVIDRRYEDVTN-KKRLDPYAIGARLKSIRKDKGMS 128 ++ GE K L ++ + + +R + + Sbjct: 70 YVLSGEYASDDSAIDREIMKELQSFSDDEKERVLRVVRALK 110 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 39/100 (39%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 K +D +IG +LK IR KG+ Q + + S +SN E R + I Sbjct: 1 MEDFMKDIDFESIGKKLKEIRLSKGLPQDAVASVAEVNTSHISNIENNRVKVSLPTLIYI 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +D++ G+ +I R + S +K+ Sbjct: 61 CNALGVTVDYVLSGEYASDDSAIDREIMKELQSFSDDEKE 100 >gi|218694781|ref|YP_002402448.1| transcriptional repressor DicA [Escherichia coli 55989] gi|309793330|ref|ZP_07687757.1| transcriptional repressor DicA [Escherichia coli MS 145-7] gi|218351513|emb|CAU97222.1| putative repressor protein of division inhibition from phage origin [Escherichia coli 55989] gi|308122917|gb|EFO60179.1| transcriptional repressor DicA [Escherichia coli MS 145-7] Length = 152 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI++ RK +Q ++ A S+++L+E+ + + L + S W Sbjct: 21 KTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTW 80 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIG-ARLKSIRK-DKGMSQIEFGKL 135 I G+ V+ LD L+ R K Q + +L Sbjct: 81 ILFGDEDKTPAPPVSLDSTLDLSEDELEMLRLYRALPKSEQQAQLSEL 128 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 37/74 (50%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 ++ +G R++ RK G+SQ K G+ S++S +E T P + ++ +V + Sbjct: 17 NMNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQC 76 Query: 168 HLDWIYFGDEVIVP 181 WI FGDE P Sbjct: 77 SPTWILFGDEDKTP 90 >gi|169335627|ref|ZP_02862820.1| hypothetical protein ANASTE_02047 [Anaerofustis stercorihominis DSM 17244] gi|169258365|gb|EDS72331.1| hypothetical protein ANASTE_02047 [Anaerofustis stercorihominis DSM 17244] Length = 229 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I +R+ NN +Q+ +A AV+ +E C I + L + + D+I Sbjct: 3 IGNKIMTLRRENNFSQEILAEKLGVSRQAVSKWEAEQCLPDIDKIVKLSELFSVPTDYIL 62 Query: 92 DGEVI 96 + Sbjct: 63 KEDYE 67 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ ++R++ SQ + LG+ +S +E + +P+I K+ ++ D+ Sbjct: 1 MTIGNKIMTLRRENNFSQEILAEKLGVSRQAVSKWEAEQCLPDIDKIVKLSELFSVPTDY 60 Query: 172 IYFGD 176 I D Sbjct: 61 ILKED 65 >gi|167745559|ref|ZP_02417686.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662] gi|167654871|gb|EDR99000.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662] Length = 323 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 T + + K T++KD+R+ +Q++MA AV +E G I + + Sbjct: 13 TIKTEEEHKMFSTKLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIAS 72 Query: 82 EYEISFDWIYDGEVIDRRYED 102 ++IS D + + E R+ D Sbjct: 73 LFDISIDELLESEERSRQKGD 93 >gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] gi|262335884|gb|ACY49680.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] Length = 347 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 36/94 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R + +++A ++A++ +E G+ + + + L ++ + Sbjct: 3 IGARIKQARIRQGLSLRKLAKEVGVSQTAISKYEKGVITPDSQMLIRLARALDVKPSFFL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 ++R + L ++ +R Sbjct: 63 RPVRVERIKPIYRKRSALGKKVQRQIVEQVRIWL 96 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IGAR+K R +G+S + K +G+ + +S YE+G P+ + ++ + + Sbjct: 1 MSIGARIKQARIRQGLSLRKLAKEVGVSQTAISKYEKGVITPDSQMLIRLARALDVKPSF 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 V K I R + K ++ Sbjct: 61 FLRPVRVERIKPIYRKRSALGKKVQRQ 87 >gi|166153474|ref|YP_001653988.1| transcriptional regulator [Bacillus thuringiensis] gi|165875313|gb|ABY68470.1| putative transcriptional regulator [Bacillus thuringiensis] Length = 188 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 40/80 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R +G SQ + + + + T+SN+E R+ P+I + + LD Sbjct: 1 MNLSKQIKKYRDREGFSQEDLAEKIYVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + GD ++ ++++ K N+ Sbjct: 61 LVKGDMEMMKNNLQQVKFNK 80 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R +Q+++A ++ +EN I L L +++S D + Sbjct: 2 NLSKQIKKYRDREGFSQEDLAEKIYVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDDL 61 Query: 91 YDGEVIDRRYEDVT 104 G++ + Sbjct: 62 VKGDMEMMKNNLQQ 75 >gi|308179920|ref|YP_003924048.1| XRE family DNA-binding protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045411|gb|ADN97954.1| XRE family DNA-binding protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 102 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G ++K +RKA TQ E+A + + A+ +E G SI + + + + S D Sbjct: 1 MEYFGDKLKSLRKAKKLTQVELAQQLDISKWAITSYEQGKTYPSIEVLIKICSVLDTSSD 60 Query: 89 WIY 91 ++ Sbjct: 61 YLL 63 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +LKS+RK K ++Q+E + L + +++YEQG+T P I+ KI V D Sbjct: 1 MEYFGDKLKSLRKAKKLTQVELAQQLDISKWAITSYEQGKTYPSIEVLIKICSVLDTSSD 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|291528282|emb|CBK93868.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 104 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RIK R+A N TQ+E+A N + V++ E G+ T + + + N ++S D Sbjct: 4 KAVGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVSADA 63 Query: 90 IY 91 + Sbjct: 64 LL 65 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A+G R+K+ R+ K ++Q E L+ + + +S E+G + ++ I Sbjct: 1 MDLKAVGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 D + + + K K ++K Sbjct: 61 ADALLIDVVTHSVTGVTNELSDMIGKLPKDEQK 93 >gi|260855310|ref|YP_003229201.1| putative phage repressor CI [Escherichia coli O26:H11 str. 11368] gi|260868064|ref|YP_003234466.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|293405073|ref|ZP_06649065.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298380719|ref|ZP_06990318.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|331652950|ref|ZP_08353955.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli M718] gi|331683077|ref|ZP_08383678.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli H299] gi|257753959|dbj|BAI25461.1| predicted phage repressor CI [Escherichia coli O26:H11 str. 11368] gi|257764420|dbj|BAI35915.1| predicted phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|291427281|gb|EFF00308.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298278161|gb|EFI19675.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|320646852|gb|EFX15716.1| transcriptional repressor DicA [Escherichia coli O157:H- str. 493-89] gi|320663403|gb|EFX30700.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. USDA 5905] gi|331049048|gb|EGI21120.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli M718] gi|331079292|gb|EGI50489.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli H299] Length = 135 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI++ RK +Q ++ A S+++L+E+ + + L + S W Sbjct: 4 KTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTW 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIG-ARLKSIRK-DKGMSQIEFGKL 135 I G+ V+ LD L+ R K Q + +L Sbjct: 64 ILFGDEDKTPAPPVSLDSALDLSEDELEMLRLYRALPKSEQQAQLSEL 111 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R++ RK G+SQ K G+ S++S +E T P + ++ +V + Sbjct: 1 MNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCS 60 Query: 169 LDWIYFGDEVIVP 181 WI FGDE P Sbjct: 61 PTWILFGDEDKTP 73 >gi|229012522|ref|ZP_04169696.1| hypothetical protein bmyco0001_29650 [Bacillus mycoides DSM 2048] gi|228748682|gb|EEL98533.1| hypothetical protein bmyco0001_29650 [Bacillus mycoides DSM 2048] Length = 242 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 ++ + Sbjct: 66 CYTPQMKQEDIKN 78 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELICYTPQMKQEDIKN 78 >gi|229153736|ref|ZP_04281878.1| transcriptional regulator [Bacillus cereus m1550] gi|228629725|gb|EEK86411.1| transcriptional regulator [Bacillus cereus m1550] Length = 196 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 40/80 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R +G SQ + + + + T+SN+E R+ P+I + + LD Sbjct: 9 MNLSKQIKKYRDREGFSQEDLAEKIYVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDD 68 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + GD ++ ++++ K N+ Sbjct: 69 LVKGDMEMMKNNLQQVKFNK 88 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R +Q+++A ++ +EN I L L +++S D + Sbjct: 10 NLSKQIKKYRDREGFSQEDLAEKIYVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDDL 69 Query: 91 YDGEVIDRRYEDVT 104 G++ + Sbjct: 70 VKGDMEMMKNNLQQ 83 >gi|325262256|ref|ZP_08128994.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324033710|gb|EGB94987.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 197 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I +R+ TQK +A N + ++ +E G+ + L + E+ + I Sbjct: 5 KVGKLILTLRQEKGMTQKALADAMNISDRTISKWERGVGCPDVSLLRGLSDILEVDVEKI 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 G++ + N K++ Y Sbjct: 65 LSGDLRPNDIDRG-NMKKIKFYVCPDC 90 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G + ++R++KGM+Q + + + T+S +E+G P++ R + + + Sbjct: 1 MDCSKVGKLILTLRQEKGMTQKALADAMNISDRTISKWERGVGCPDVSLLRGLSDILEVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 ++ I GD + P I R + Sbjct: 61 VEKILSGD--LRPNDIDRGNMKK 81 >gi|238027673|ref|YP_002911904.1| putative phage repressor [Burkholderia glumae BGR1] gi|237876867|gb|ACR29200.1| Putative phage repressor [Burkholderia glumae BGR1] Length = 241 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 10/101 (9%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+RI++ R A+ T +++ SAV +E G L + S ++ Sbjct: 2 DIGSRIREKRLAHGLTLQQVGDMFGISRSAVASWERGATRPDQDKLPRLARILKTSIAFL 61 Query: 91 YDGE----------VIDRRYEDVTNKKRLDPYAIGARLKSI 121 GE D N LD + + + I Sbjct: 62 LSGERRHDIGGSDSPTDDDEVTEDNGYTLDAPPLRSDIVQI 102 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 36/65 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+R++ R G++ + G + G+ S ++++E+G T P+ ++ ++ K + + Sbjct: 1 MDIGSRIREKRLAHGLTLQQVGDMFGISRSAVASWERGATRPDQDKLPRLARILKTSIAF 60 Query: 172 IYFGD 176 + G+ Sbjct: 61 LLSGE 65 >gi|227873617|ref|ZP_03991855.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840535|gb|EEJ50927.1| transcriptional regulator [Oribacterium sinus F0268] Length = 158 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 37/102 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +R TQ E A ++++ +ENG S + +++S+ I Sbjct: 2 IGENIRKLRHTQGLTQPEFAERIGVSRNSLSRYENGSSPISTDIIDRICQAFQVSYREIV 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 E + E+ ++D + A R + Sbjct: 62 GEEKMINPLEEYQLSSKIDLFKERAASILARLYHFQDKHAIA 103 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++ +R +G++Q EF + +G+ ++LS YE G + +I Q + I Sbjct: 1 MIGENIRKLRHTQGLTQPEFAERIGVSRNSLSRYENGSSPISTDIIDRICQAFQVSYREI 60 Query: 173 YFGDEVIVP 181 +++I P Sbjct: 61 VGEEKMINP 69 >gi|126726502|ref|ZP_01742343.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126704365|gb|EBA03457.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 207 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +RK T ++ A A S ++ ENG S + L +IS + Sbjct: 26 DLGARVRQLRKDRQWTLEQAANHAGLARSTLSKIENGQMSPTYDALKKLALGLDISVPQL 85 Query: 91 YDGEVID 97 + Sbjct: 86 FTTPTNS 92 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 I + + N + LD +GAR++ +RKD+ + + G+ STLS E G+ Sbjct: 7 LAALQITQSDGETANAEPLD---LGARVRQLRKDRQWTLEQAANHAGLARSTLSKIENGQ 63 Query: 151 TIPEIKPARKIKQVTKKHLDWIYF 174 P +K+ + ++ Sbjct: 64 MSPTYDALKKLALGLDISVPQLFT 87 >gi|15675661|ref|NP_269835.1| hypothetical protein SPy_1834 [Streptococcus pyogenes M1 GAS] gi|71911371|ref|YP_282921.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|13622874|gb|AAK34556.1| hypothetical protein SPy_1834 [Streptococcus pyogenes M1 GAS] gi|71854153|gb|AAZ52176.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] Length = 195 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I RK +Q+++A +++ +EN I L L +++S D + Sbjct: 2 EIGQQIIRYRKQQALSQEKLAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ + + + + ++SN+E +T P+I + Q+ + LD Sbjct: 1 MEIGQQIIRYRKQQALSQEKLAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFKRDTK 86 >gi|75761993|ref|ZP_00741910.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490526|gb|EAO53825.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 143 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K R+ +Q+ +A + +V+ +E G +I + L + + I+ D + Sbjct: 3 FGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPNIGVIIDLSDLFGITIDELL 62 Query: 92 DGEVIDRRYEDVTNKKRLD 110 + + +K D Sbjct: 63 RSDGELKEKIIQDSKGSTD 81 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK R+ KG SQ + + ++S +E G+ P I + + +D Sbjct: 1 MFFGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPNIGVIIDLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + D + K I+ +KG+ Sbjct: 61 LLRSDGELKEKIIQDSKGSTD 81 >gi|312887464|ref|ZP_07747063.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311300104|gb|EFQ77174.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 262 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI+ +R + +Q +A N S + E G S + + Y S++W Sbjct: 8 KKIGERIRSVRLERHYSQAFVASILNISRSNYSQIEIGNQFPSFESLSKIASYYSKSYEW 67 Query: 90 IYDGEVIDRRYED 102 + G+ D E+ Sbjct: 68 LLHGQEADPYVEN 80 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ L IG R++S+R ++ SQ +L + S S E G P + KI Sbjct: 2 QEILSKKKIGERIRSVRLERHYSQAFVASILNISRSNYSQIEIGNQFPSFESLSKIASYY 61 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 K +W+ G E P A+ +Q + KK Sbjct: 62 SKSYEWLLHGQE-ADPYVENSARSSQEIQAEKK 93 >gi|308181771|ref|YP_003925899.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047262|gb|ADN99805.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 188 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R TQ ++A + V +ENG + ++ L +++ + + Sbjct: 5 IGQRIKAKRLELKLTQNQVAEKLFVTQQTVARWENGKHTLPVKAVQDLSELFDVPTAYFF 64 Query: 92 DGEVIDRRYEDV 103 + I R + Sbjct: 65 GEDQIIMRRFNF 76 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 33/65 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K+ R + ++Q + + L + T++ +E G+ +K + + ++ + + Sbjct: 7 QRIKAKRLELKLTQNQVAEKLFVTQQTVARWENGKHTLPVKAVQDLSELFDVPTAYFFGE 66 Query: 176 DEVIV 180 D++I+ Sbjct: 67 DQIIM 71 >gi|323343150|ref|ZP_08083381.1| transcription regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463214|gb|EFY08409.1| transcription regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 136 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +K +R+ N TQ ++A N AV+ +E G + + Y + D + Sbjct: 2 KLSDNLKRLREENALTQDKVAQSLNVSRQAVSNWEQGKRYPDAIMLIQISEFYGVPVDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + + IG ++ Sbjct: 62 LKSDRDYAKALVIDKARFEEVLFIGTQI 89 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK +R++ ++Q + + L + +SN+EQG+ P+ +I + +D Sbjct: 1 MKLSDNLKRLREENALTQDKVAQSLNVSRQAVSNWEQGKRYPDAIMLIQISEFYGVPVDD 60 Query: 172 IYFGDEVIVPKSI 184 + D + Sbjct: 61 LLKSDRDYAKALV 73 >gi|193214005|ref|YP_001995204.1| XRE family transcriptional regulator [Chloroherpeton thalassium ATCC 35110] gi|193087482|gb|ACF12757.1| transcriptional regulator, XRE family [Chloroherpeton thalassium ATCC 35110] Length = 270 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G R K +RKA Q + +S+++ ENG S L L + I +W Sbjct: 3 EMIGDRFKAVRKALMLNQDAFSKDIGISQSSLSEIENGKFSPGSDIILSLCRYFNIDSNW 62 Query: 90 IYDGEVIDRRYEDVTNKK 107 + G + ++ Sbjct: 63 LLTGTGKMFLEKKPESEN 80 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 K++RK ++Q F K +G+ S+LS E G+ P + + +W+ G Sbjct: 10 KAVRKALMLNQDAFSKDIGISQSSLSEIENGKFSPGSDIILSLCRYFNIDSNWLLTG 66 >gi|153814290|ref|ZP_01966958.1| hypothetical protein RUMTOR_00499 [Ruminococcus torques ATCC 27756] gi|145848686|gb|EDK25604.1| hypothetical protein RUMTOR_00499 [Ruminococcus torques ATCC 27756] Length = 125 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G RIK++R+ NN +Q ++A S ++ EN S+ + + N I+ D Sbjct: 10 HKQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENAKRKASLESIIRIVNALGITVD 69 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + G + T+ L Sbjct: 70 ELLAGVQLHNPTAYQTDLDLL 90 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + ++ IG R+K +R+ SQ + + + S +S+ E + ++ +I Sbjct: 1 MNESLASVNHKQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENAKRKASLESIIRI 60 Query: 162 KQVTKKHLDWIYFGDEVIVP 181 +D + G ++ P Sbjct: 61 VNALGITVDELLAGVQLHNP 80 >gi|229155430|ref|ZP_04283539.1| hypothetical protein bcere0010_16230 [Bacillus cereus ATCC 4342] gi|228627991|gb|EEK84709.1| hypothetical protein bcere0010_16230 [Bacillus cereus ATCC 4342] Length = 157 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +EN I + L Y ++ D + Sbjct: 3 LGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDKLI 62 Query: 92 DGEVIDRRY 100 G + Sbjct: 63 KGNQNTKEK 71 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +LK +R+ K SQ + K +G+ + +E ++ P+I + ++ LD Sbjct: 1 MSLGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDK 60 Query: 172 IYFGDEVIVPK 182 + G++ K Sbjct: 61 LIKGNQNTKEK 71 >gi|210608500|ref|ZP_03287876.1| hypothetical protein CLONEX_00055 [Clostridium nexile DSM 1787] gi|210152991|gb|EEA83997.1| hypothetical protein CLONEX_00055 [Clostridium nexile DSM 1787] Length = 119 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +KD+R+ N TQ ++A + +E L N + +S D++ Sbjct: 2 NFGNNLKDLRETRNVTQGQLAEYLQVSRPTIAGYETKSRQPDFEKLEKLANYFHVSIDYL 61 Query: 91 YDG---EVIDRRYEDVTNKKRLDPYAIGAR 117 G D + N+K LD A Sbjct: 62 VSGSETTSTDIPLKKEPNEKSLDRDVAMAY 91 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G LK +R+ + ++Q + + L + T++ YE P+ + K+ +D+ Sbjct: 1 MNFGNNLKDLRETRNVTQGQLAEYLQVSRPTIAGYETKSRQPDFEKLEKLANYFHVSIDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + G E + + N+ S Sbjct: 61 LVSGSETTSTDIPLKKEPNEKS 82 >gi|183599041|ref|ZP_02960534.1| hypothetical protein PROSTU_02486 [Providencia stuartii ATCC 25827] gi|188021257|gb|EDU59297.1| hypothetical protein PROSTU_02486 [Providencia stuartii ATCC 25827] Length = 104 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK + ++A N + V+ +ENG+ + + + + + DW + Sbjct: 7 IGIKIKTRRKELGLSGADLAKKLNISQQQVSRYENGINKIPLNHLVSIAIALKCPIDWFF 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 G + + Y + Sbjct: 67 QGCITEEDYSMQDETINI 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y IG ++K+ RK+ G+S + K L + +S YE G + I K +D Sbjct: 4 HYFIGIKIKTRRKELGLSGADLAKKLNISQQQVSRYENGINKIPLNHLVSIAIALKCPID 63 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 W + G S++ N S++ K Sbjct: 64 WFFQGCITEEDYSMQDETINIKSQELK 90 >gi|163838939|ref|YP_001623344.1| HTH transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952415|gb|ABY21930.1| HTH transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 551 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 2/109 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK+ N T ++ + + S +++ ENG + L +S + + Sbjct: 78 LGRRVRHLRKSANMTLDDLGLMVDAAPSQLSMIENGKREPKLSLLNSLAKSLGVSIEQLL 137 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR--LKSIRKDKGMSQIEFGKLLGM 138 E RR +R A+ L +R +S L+G+ Sbjct: 138 GSEPPSRRAALEIELERAQRGALYESLGLPKVRVSSRLSMDALEALVGL 186 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 35/85 (41%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + E + +D ++G R++ +RK M+ + G ++ S LS E G+ Sbjct: 56 TWQRPAPGTERAASNDEIDVISLGRRVRHLRKSANMTLDDLGLMVDAAPSQLSMIENGKR 115 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGD 176 P++ + + ++ + + Sbjct: 116 EPKLSLLNSLAKSLGVSIEQLLGSE 140 >gi|147677806|ref|YP_001212021.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] gi|146273903|dbj|BAF59652.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] Length = 224 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RIK R+ TQ E+ + +A+N +E G I + N ++ Sbjct: 4 KIGARIKKAREEKYLTQAELGVKLGVSATAINYYEKGKRKIGIDDLYRMANALGKPLEYF 63 Query: 91 YDGE 94 + Sbjct: 64 LGRD 67 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 35/66 (53%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + IGAR+K R++K ++Q E G LG+ + ++ YE+G+ I ++ K L+ Sbjct: 2 YFKIGARIKKAREEKYLTQAELGVKLGVSATAINYYEKGKRKIGIDDLYRMANALGKPLE 61 Query: 171 WIYFGD 176 + D Sbjct: 62 YFLGRD 67 >gi|49183978|ref|YP_027230.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|227816122|ref|YP_002816131.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684] gi|254682796|ref|ZP_05146657.1| hypothetical protein BantC_02950 [Bacillus anthracis str. CNEVA-9066] gi|254740143|ref|ZP_05197835.1| hypothetical protein BantKB_03819 [Bacillus anthracis str. Kruger B] gi|49177905|gb|AAT53281.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|227003523|gb|ACP13266.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684] Length = 92 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + DE + K I+ +K Sbjct: 61 LLRSDEELTQKVIEDSK 77 >gi|296450733|ref|ZP_06892486.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296260577|gb|EFH07419.1| XRE family transcriptional regulator [Clostridium difficile NAP08] Length = 130 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 37/94 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RIK R+A TQ+++A + V++ E G+ + + + + N E+S D Sbjct: 30 KAVGQRIKMAREAKGLTQEDLAAMVELSPTHVSVIERGLKAAKLDTFVAIANALEVSADS 89 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + V + K I K Sbjct: 90 LLIDVVAHSVTGVTNELSEMIGKLPKEEQKKIIK 123 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 4/117 (3%) Query: 90 IYDGEVIDRRYEDVTNKKR----LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 +Y G N + +D A+G R+K R+ KG++Q + ++ + + +S Sbjct: 4 LYIGTGGSYTNFRPKNSSKGGAAMDLKAVGQRIKMAREAKGLTQEDLAAMVELSPTHVSV 63 Query: 146 YEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 E+G ++ I + D + + K K+++K Sbjct: 64 IERGLKAAKLDTFVAIANALEVSADSLLIDVVAHSVTGVTNELSEMIGKLPKEEQKK 120 >gi|296269222|ref|YP_003651854.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092009|gb|ADG87961.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 432 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 8/105 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK +Q ++A +S V+L E+G + + + + S ++ Sbjct: 7 IGERIKMLRKQRGLSQAQLAHP-ELSDSYVSLIESGKRTPTPAVLELIAQKLGCSLTYLI 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 +G + E + L R+ + +LL Sbjct: 66 NGVTNEELEEIELALRFARLALENGDLAEARR-------RYAELL 103 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +RK +G+SQ + + +S +S E G+ P I Q L ++ G Sbjct: 9 ERIKMLRKQRGLSQAQLAHP-ELSDSYVSLIESGKRTPTPAVLELIAQKLGCSLTYLING 67 >gi|260427234|ref|ZP_05781213.1| DNA-binding protein [Citreicella sp. SE45] gi|260421726|gb|EEX14977.1| DNA-binding protein [Citreicella sp. SE45] Length = 212 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 34/93 (36%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 S K Q + + +G +++++RK T E+A ++ ENG+ Sbjct: 5 ASSKLTQNPHAVRELREKNLEVAIGRQVRELRKRQRMTGSELAQQTGLSVGMLSKIENGV 64 Query: 69 CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 S S+ L N + ++ G R Sbjct: 65 ISPSLNTLQALANALRVPLVQLFSGFEEPRGAM 97 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG +++ +RK + M+ E + G+ LS E G P + + + + L + Sbjct: 27 AIGRQVRELRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSLNTLQALANALRVPLVQL 86 Query: 173 YFG-DEVIVPKSIKRAKGNQSSKKSKK 198 + G +E +K +G + + + Sbjct: 87 FSGFEEPRGAMHVKAGQGVEIERAGTR 113 >gi|291287342|ref|YP_003504158.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884502|gb|ADD68202.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 178 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++IRK + T ++++ +S ++ ENG S SI + + +++ Sbjct: 4 GIKLREIRKKLSMTLEDISQKTGFTKSFISQIENGKNSPSIASLKKICYALGTTISELFE 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGA 116 E + K +I Sbjct: 64 DERNIVNIFSSPDFKVFKNKSISM 87 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G +L+ IRK M+ + + G S +S E G+ P I +KI + Sbjct: 1 MSYGIKLREIRKKLSMTLEDISQKTGFTKSFISQIENGKNSPSIASLKKICYALGTTISE 60 Query: 172 IYFGDEVIV 180 ++ + IV Sbjct: 61 LFEDERNIV 69 >gi|290889566|ref|ZP_06552656.1| hypothetical protein AWRIB429_0046 [Oenococcus oeni AWRIB429] gi|290480764|gb|EFD89398.1| hypothetical protein AWRIB429_0046 [Oenococcus oeni AWRIB429] Length = 198 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 45/87 (51%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + S R++ GM+Q + +LL + LSN+E+G+ P++ ++ ++ LD Sbjct: 6 FMVFSEIISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLD 65 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD+ ++ K + ++ + KK + Sbjct: 66 VLIKGDKKVMKKVQEDSQDLRKQKKLR 92 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I R+ TQ ++A A++ +E G + + L Y++S D + G+ Sbjct: 13 ISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDVLIKGDK 72 Query: 96 IDRRYEDVTNK 106 + ++ Sbjct: 73 KVMKKVQEDSQ 83 >gi|256004475|ref|ZP_05429455.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|255991616|gb|EEU01718.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] Length = 376 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I +R+ TQ+++A +++V+ +E G I + L + IS D + Sbjct: 7 NIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDEL 66 Query: 91 YDGEVIDRRYE 101 E + + Sbjct: 67 MGYEPQMSKED 77 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 41/80 (51%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ I + +R++KG++Q + +G+ +++S +E G++ P+I ++ + Sbjct: 1 MKMKEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFN 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 +D + + + + I++ Sbjct: 61 ISIDELMGYEPQMSKEDIRK 80 >gi|281418200|ref|ZP_06249220.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|281409602|gb|EFB39860.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] Length = 376 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I +R+ TQ+++A +++V+ +E G I + L + IS D + Sbjct: 7 NIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDEL 66 Query: 91 YDGEVIDRRYE 101 E + + Sbjct: 67 MGYEPQMSKED 77 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 41/80 (51%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ I + +R++KG++Q + +G+ +++S +E G++ P+I ++ + Sbjct: 1 MKMKEINIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFN 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 +D + + + + I++ Sbjct: 61 ISIDELMGYEPQMSKEDIRK 80 >gi|169334227|ref|ZP_02861420.1| hypothetical protein ANASTE_00625 [Anaerofustis stercorihominis DSM 17244] gi|169258944|gb|EDS72910.1| hypothetical protein ANASTE_00625 [Anaerofustis stercorihominis DSM 17244] Length = 194 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 2/90 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G IK +R + TQKE+ N + ++ +E G I L + D++ Sbjct: 5 KIGNLIKTLRIKKDMTQKEIGDMLNVSDKTISKWETGNGLPDISILSSLSEVLDTQIDYL 64 Query: 91 YDGE--VIDRRYEDVTNKKRLDPYAIGARL 118 GE D + ++ N K + Sbjct: 65 LTGEISTNDNKGGNMKNTKFYVCDKCDNII 94 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 38/68 (55%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +K++R K M+Q E G +L + + T+S +E G +P+I + +V Sbjct: 1 MNNIKIGNLIKTLRIKKDMTQKEIGDMLNVSDKTISKWETGNGLPDISILSSLSEVLDTQ 60 Query: 169 LDWIYFGD 176 +D++ G+ Sbjct: 61 IDYLLTGE 68 >gi|319937843|ref|ZP_08012245.1| DNA-binding protein [Coprobacillus sp. 29_1] gi|319807073|gb|EFW03689.1| DNA-binding protein [Coprobacillus sp. 29_1] Length = 194 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++IK R ++ +Q+E+A ++ +ENG I + L + IS D + Sbjct: 2 KISSQIKKYRLESSLSQEELADKIFVTRQTISNWENGKNYPDINSIVLLSTLFGISLDIL 61 Query: 91 YDGEVIDRRY 100 G++ + + Sbjct: 62 VKGDLEEMKE 71 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +++K R + +SQ E + + T+SN+E G+ P+I + + LD Sbjct: 1 MKISSQIKKYRLESSLSQEELADKIFVTRQTISNWENGKNYPDINSIVLLSTLFGISLDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + I+ + K Sbjct: 61 LVKGDLEEMKEHIRNEDIQRFHK 83 >gi|226305801|ref|YP_002765761.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226184918|dbj|BAH33022.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 194 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 35/73 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ ++ T +++ + S ++ E+G ++ L + + + D + Sbjct: 13 IGPRLRALRQQSDMTLADLSETTDISVSTLSRLESGTRRANLELLLPIAKAHGVPLDDLV 72 Query: 92 DGEVIDRRYEDVT 104 + ++ D R + Sbjct: 73 NSKIKDPRVREEP 85 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+++R+ M+ + + + STLS E G ++ I + LD + Sbjct: 17 LRALRQQSDMTLADLSETTDISVSTLSRLESGTRRANLELLLPIAKAHGVPLDDLV 72 >gi|254428879|ref|ZP_05042586.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] gi|196195048|gb|EDX90007.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] Length = 119 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R A TQ+++ +S ++ +ENG S R L+ +S D + G Sbjct: 15 ERLKAARLALGMTQEQLGFELEVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDHLICG 74 Query: 94 EVIDRRYEDVTNKK-RLDPYAIGARLKSIRK 123 + ++ E + ++ A LK R+ Sbjct: 75 DQVEGASELKSKYDAQVRNDAEAQLLKGYRR 105 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 37/76 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK+ R GM+Q + G L + ST+S +E GR P + K+K V LD Sbjct: 11 MSFPERLKAARLALGMTQEQLGFELEVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDH 70 Query: 172 IYFGDEVIVPKSIKRA 187 + GD+V +K Sbjct: 71 LICGDQVEGASELKSK 86 >gi|167749275|ref|ZP_02421402.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702] gi|167657768|gb|EDS01898.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702] gi|291556859|emb|CBL33976.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 122 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ RIK +RKA +Q ++A + A +L+E G L + Sbjct: 1 MSKNSGTVSGAFSERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIA 60 Query: 81 NEYEISFDWIY 91 + D + Sbjct: 61 EYFGTDTDTLL 71 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A R+K +RK KG SQ + + LG+ S YE G+ P KI + D + Sbjct: 11 AFSERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTDTDTL 70 Query: 173 Y 173 Sbjct: 71 L 71 >gi|160876601|ref|YP_001555917.1| putative phage repressor [Shewanella baltica OS195] gi|160862123|gb|ABX50657.1| putative phage repressor [Shewanella baltica OS195] gi|315268797|gb|ADT95650.1| putative phage repressor [Shewanella baltica OS678] Length = 229 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK RK TQ +A ++ V+L+E+G S L S +++ G Sbjct: 4 ERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYLLFG 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + L Sbjct: 64 NKETKPESNAEWAGGFEIWDSDTPL 88 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+K RK+ G +Q K +G+ +T+S +E G T P+ + + + +++ Sbjct: 1 MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYL 60 Query: 173 YFGDEVIVPKS 183 FG++ P+S Sbjct: 61 LFGNKETKPES 71 >gi|332298033|ref|YP_004439955.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181136|gb|AEE16824.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 331 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +I+ +RK N +Q+E+A +V+ +E+G + L L + +S D + Sbjct: 2 KLAEKIEILRKRNGWSQEELADKVAVSRQSVSKWESGGAVPELDKILLLSTLFGVSTDTL 61 Query: 91 YDGE 94 + Sbjct: 62 LKDD 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +++ +RK G SQ E + + ++S +E G +PE+ + + D Sbjct: 1 MKLAEKIEILRKRNGWSQEELADKVAVSRQSVSKWESGGAVPELDKILLLSTLFGVSTDT 60 Query: 172 IYFGDEVIVPKSIKRA 187 + D + + A Sbjct: 61 LLKDDLSVSAEPASSA 76 >gi|261209042|ref|ZP_05923446.1| predicted protein [Enterococcus faecium TC 6] gi|289566563|ref|ZP_06446985.1| predicted protein [Enterococcus faecium D344SRF] gi|294615927|ref|ZP_06695763.1| repressor [Enterococcus faecium E1636] gi|260076954|gb|EEW64677.1| predicted protein [Enterococcus faecium TC 6] gi|289161662|gb|EFD09540.1| predicted protein [Enterococcus faecium D344SRF] gi|291591214|gb|EFF22887.1| repressor [Enterococcus faecium E1636] Length = 250 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K++R T +E+A ++ ++ +ENG S ++ L N +++ W+ Sbjct: 8 QRLKELRAEKGITLEELAKKIGTTKTTLSRYENGERSPKLQLVGLLANYFQVEMSWL 64 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ RLK +R +KG++ E K +G +TLS YE G P+++ + + Sbjct: 1 MNEKLFPQRLKELRAEKGITLEELAKKIGTTKTTLSRYENGERSPKLQLVGLLANYFQVE 60 Query: 169 LDWI 172 + W+ Sbjct: 61 MSWL 64 >gi|296130851|ref|YP_003638101.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296022666|gb|ADG75902.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 198 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ T ++A+ S ++ E+G+ ++ L L +E++ D + Sbjct: 14 VGPRLRALREQREATLADVAVVTGISVSTLSRLESGLRRPTLELLLPLARFHEVTIDELV 73 Query: 92 DGEVIDRRYED 102 D D Sbjct: 74 DVPAGDDPRVP 84 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY---F 174 L+++R+ + + + + G+ STLS E G P ++ + + + +D + Sbjct: 18 LRALREQREATLADVAVVTGISVSTLSRLESGLRRPTLELLLPLARFHEVTIDELVDVPA 77 Query: 175 GDEVIVP 181 GD+ VP Sbjct: 78 GDDPRVP 84 >gi|218133013|ref|ZP_03461817.1| hypothetical protein BACPEC_00874 [Bacteroides pectinophilus ATCC 43243] gi|217991886|gb|EEC57890.1| hypothetical protein BACPEC_00874 [Bacteroides pectinophilus ATCC 43243] Length = 69 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 30/56 (53%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I+ +R N +QK++A + ++ EN + S+ + + + + +++S D++ Sbjct: 5 IRKLRLERNMSQKQLAKVVGTSQQTISRIENDVMSSPVDLLVNIADLFDVSVDYLL 60 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + ++ +R ++ MSQ + K++G T+S E + I + +D++ Sbjct: 1 MQSMIRKLRLERNMSQKQLAKVVGTSQQTISRIENDVMSSPVDLLVNIADLFDVSVDYLL 60 >gi|194467240|ref|ZP_03073227.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454276|gb|EDX43173.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 212 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 28/78 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ TQ+++A ++ +ENG I + + + Y +S D + Sbjct: 2 KFADKMKLYRRQKEWTQQDVAERLLISRKTISSWENGRSYPDIFMLVQISDLYHVSLDDL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + Sbjct: 62 LREDHEMIDNYKEEHTMN 79 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K R+ K +Q + + L + T+S++E GR+ P+I +I + LD Sbjct: 1 MKFADKMKLYRRQKEWTQQDVAERLLISRKTISSWENGRSYPDIFMLVQISDLYHVSLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + D ++ + N Sbjct: 61 LLREDHEMIDNYKEEHTMNAKK 82 >gi|251795933|ref|YP_003010664.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543559|gb|ACT00578.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 231 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + G RIK++R + +Q+ +A A S ++ E G + SI + + +I Sbjct: 2 DIRIEFGQRIKELRARSGMSQEHLAYRAGLDRSYISGVERGERNVSIINIEKIASALQIG 61 Query: 87 FDWIYDGEVIDRRYEDVTNK 106 +++ GE + Sbjct: 62 VAYLFSGERFSPKQAYQPKD 81 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+K +R GMSQ G+ S +S E+G I KI + + + Sbjct: 5 IEFGQRIKELRARSGMSQEHLAYRAGLDRSYISGVERGERNVSIINIEKIASALQIGVAY 64 Query: 172 IYFGDEVIVPKSIKRAK 188 ++ G E PK + K Sbjct: 65 LFSG-ERFSPKQAYQPK 80 >gi|153001880|ref|YP_001367561.1| putative phage repressor [Shewanella baltica OS185] gi|151366498|gb|ABS09498.1| putative phage repressor [Shewanella baltica OS185] Length = 229 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK RK TQ +A ++ V+L+E+G S L S +++ G Sbjct: 4 ERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYLLFG 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + L Sbjct: 64 NKETKPESNAEWAGGFEIWDSDTPL 88 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+K RK+ G +Q K +G+ +T+S +E G T P+ + + + +++ Sbjct: 1 MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYL 60 Query: 173 YFGDEVIVPKS 183 FG++ P+S Sbjct: 61 LFGNKETKPES 71 >gi|116695934|ref|YP_841510.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530433|emb|CAJ96780.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 199 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ +RK N T +E+A A+ +S ++ E G+ S +I L L +++ D + Sbjct: 16 IAERLAALRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLAEALDVTVDQLI 75 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 RL ++RK G++ E + + S LS E+G + P I K+ + +D + Sbjct: 18 ERLAALRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLAEALDVTVDQLIAK 77 Query: 174 --FGDEVIVPKSIKRAKGNQSSKK 195 G+E+++ K+ R + S+++ Sbjct: 78 PQRGNEILLVKAADRVPFSPSAER 101 >gi|158320084|ref|YP_001512591.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140283|gb|ABW18595.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 115 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 41/106 (38%), Gaps = 3/106 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R+ +Q E+A S ++++E+ + + + ++ D++ Sbjct: 2 LGDKIKLLREDRGLSQLELAKILEVGNSTLSMYESNTRKPDYEVIKKIADYFNVTTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQIEFGKLL 136 + + D I + L+ RK + +++ Sbjct: 62 GLTEVPNQQYHDQ--ILEDYPEIISILRRNKRKLNDQDKKRIARII 105 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +R+D+G+SQ+E K+L + NSTLS YE P+ + +KI D++ E Sbjct: 6 IKLLREDRGLSQLELAKILEVGNSTLSMYESNTRKPDYEVIKKIADYFNVTTDYLLGLTE 65 Query: 178 V 178 V Sbjct: 66 V 66 >gi|59714374|ref|YP_207148.1| DNA-binding protein RDGA [Vibrio fischeri ES114] gi|59482651|gb|AAW88260.1| DNA-binding protein RDGA [Vibrio fischeri ES114] Length = 203 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 42/101 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++ R+K+ RKA +Q+++A N SA++ +E + + + L + Sbjct: 1 MKEISIRLKEKRKALRYSQRKLADLVNVTTSAISQWEREETTPKGEHLVRLAEVLNCTVQ 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 W+ E Y D+ +++ A L + +S Sbjct: 61 WLVGTEDDICEYVDIPFYEQVKASAGHGFLCECKNVTYISL 101 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RLK RK SQ + L+ + S +S +E+ T P+ + ++ +V + Sbjct: 1 MKEISIRLKEKRKALRYSQRKLADLVNVTTSAISQWEREETTPKGEHLVRLAEVLNCTVQ 60 Query: 171 WIYFGDEVI 179 W+ ++ I Sbjct: 61 WLVGTEDDI 69 >gi|327183084|gb|AEA31531.1| DNA-binding membrane protein [Lactobacillus amylovorus GRL 1118] Length = 162 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 46/88 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K +RK+ +SQ+++ K L + +SN++ R + +++ +I +V LD Sbjct: 1 MEFSDQIKQLRKENNLSQVQYAKKLHVTRQAVSNWKNNRNLLDLEMLIEINRVFHISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + GD+ + + K K ++K+K + Sbjct: 61 LILGDDNMNKMTQKLIKDTDENRKAKYN 88 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK +RK NN +Q + A + AV+ ++N + + + + IS D + Sbjct: 2 EFSDQIKQLRKENNLSQVQYAKKLHVTRQAVSNWKNNRNLLDLEMLIEINRVFHISLDQL 61 Query: 91 YDGEVIDRR-YEDVTNKKRLDPYAIGARL 118 G+ + + + + A + Sbjct: 62 ILGDDNMNKMTQKLIKDTDENRKAKYNMI 90 >gi|300812901|ref|ZP_07093295.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496127|gb|EFK31255.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 122 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 38/78 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++D+R+ +Q+E+A+ + ++ +E G ++ + N + +S + I Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKTVEKIANIFGVSRNSIL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 G ++ ++ +R+ Sbjct: 66 AGLPVEMLEQEGQEDRRV 83 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG L+ +R+ +GMSQ E LG+ T+SN+E GR +P +K KI + Sbjct: 1 MEKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKTVEKIANIFGVS 60 Query: 169 LDWIYFG 175 + I G Sbjct: 61 RNSILAG 67 >gi|291518587|emb|CBK73808.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 251 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 8/106 (7%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+ I ++RK TQK++A + AV+ +E G L +I+ + + Sbjct: 8 GSFISEMRKEKGLTQKQLADLVGVSDKAVSRWETGKGLPDTSIMPELCKALDININELLS 67 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 GE ++ ++ + + S+ +LLG+ Sbjct: 68 GERLNPEAYRGKAEEIMVDLVK--------DVQNNSKARKAELLGL 105 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 50/101 (49%), Gaps = 11/101 (10%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 LD G+ + +RK+KG++Q + L+G+ + +S +E G+ +P+ ++ + Sbjct: 1 MLDLTKTGSFISEMRKEKGLTQKQLADLVGVSDKAVSRWETGKGLPDTSIMPELCKALDI 60 Query: 168 HLDWIYFGD-----------EVIVPKSIKRAKGNQSSKKSK 197 +++ + G+ E I+ +K + N ++K++ Sbjct: 61 NINELLSGERLNPEAYRGKAEEIMVDLVKDVQNNSKARKAE 101 >gi|207721990|ref|YP_002252428.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2] gi|206587163|emb|CAQ17747.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2] Length = 209 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 1/104 (0%) Query: 14 LQEYTLIITPEIRQ-YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 +QE T + + + + R++++R A T +A S ++L E G S + Sbjct: 1 MQETTAPPSDDTDAGVNERIARRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPT 60 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 L IS ++ GE + + + + + Sbjct: 61 AAVLDKLAAGLGISLASLFGGEREGMPAQPLMRRAQQTQWRDPE 104 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 31/84 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+G P K+ L ++ G Sbjct: 22 RRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLAAGLGISLASLFGG 81 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + +P + Q+ + + Sbjct: 82 EREGMPAQPLMRRAQQTQWRDPES 105 >gi|169335255|ref|ZP_02862448.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] gi|169257993|gb|EDS71959.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] Length = 143 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 R +G RIK++RK N TQ+E+ + ++++E G S A L + + Sbjct: 14 RNKMNTIGDRIKELRKENKLTQQELGEKLGVHSNTISMYEKGNRKVSAEMANKLSEIFNV 73 Query: 86 SFDWIYDGEVIDRRYED 102 S +I GE + ++ Sbjct: 74 SVGYITKGEDNKKIKDN 90 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 39/67 (58%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+K +RK+ ++Q E G+ LG+ ++T+S YE+G + A K+ ++ + Sbjct: 17 MNTIGDRIKELRKENKLTQQELGEKLGVHSNTISMYEKGNRKVSAEMANKLSEIFNVSVG 76 Query: 171 WIYFGDE 177 +I G++ Sbjct: 77 YITKGED 83 >gi|332799793|ref|YP_004461292.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332697528|gb|AEE91985.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 127 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K +G RIK RK TQ ++ ++ EN S + L+ E +S Sbjct: 2 ESLKTIGERIKYARKLKGLTQNDIYKLTGISSGNLSDIENNKVLPSANALISLKRELGVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 DWI GE + + + K + + Sbjct: 62 IDWILTGEADVAFDKKQNKSPSDIGKLSPNEIDILLKYRKLD 103 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K RK KG++Q + KL G+ + LS+ E + +P +K+ +DWI G Sbjct: 9 ERIKYARKLKGLTQNDIYKLTGISSGNLSDIENNKVLPSANALISLKRELGVSIDWILTG 68 Query: 176 D 176 + Sbjct: 69 E 69 >gi|315300972|ref|ZP_07872315.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] gi|313630659|gb|EFR98449.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] Length = 111 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 1/96 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K VG +IK R+ Q+ +A + ++ +ENG + L + Sbjct: 2 ELNKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKR 61 Query: 87 FDWIYD-GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 D + + +T +D L+ I Sbjct: 62 LDDFFPERNLPPVDERGMTVAAHIDDDVTDEELRDI 97 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K R+++G++Q + L T+S YE G ++ ++ K LD Sbjct: 4 NKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLD 63 Query: 171 WIY 173 + Sbjct: 64 DFF 66 >gi|23465550|ref|NP_696153.1| hypothetical protein BL0981 [Bifidobacterium longum NCC2705] gi|239621901|ref|ZP_04664932.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326214|gb|AAN24789.1| hypothetical protein with helix turn helix motif [Bifidobacterium longum NCC2705] gi|239515092|gb|EEQ54959.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517097|emb|CBK70713.1| Predicted transcriptional regulators [Bifidobacterium longum subsp. longum F8] Length = 277 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 R+ +G IK +R+ TQ + A + A++ +E G SI + +E+ Sbjct: 113 REVVMSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEV 172 Query: 86 SFDWIYD 92 + + Sbjct: 173 PMARLME 179 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +K +R+++G++Q +F L + LS +E+G P I R I + + Sbjct: 117 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 176 Query: 172 IY 173 + Sbjct: 177 LM 178 >gi|317489385|ref|ZP_07947897.1| hypothetical protein HMPREF1023_01596 [Eggerthella sp. 1_3_56FAA] gi|316911492|gb|EFV33089.1| hypothetical protein HMPREF1023_01596 [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G++IK R +Q ++A V+ +EN + L L ++++ D + Sbjct: 2 ELGSQIKRHRTERGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 G+V + + K++ Sbjct: 62 IKGDVEAMKEAISNDYKKM 80 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 39/75 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G+++K R ++G+SQ + + + T+S++E +T P+++ + + +D Sbjct: 1 MELGSQIKRHRTERGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDE 60 Query: 172 IYFGDEVIVPKSIKR 186 + GD + ++I Sbjct: 61 LIKGDVEAMKEAISN 75 >gi|253580586|ref|ZP_04857850.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847957|gb|EES75923.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 111 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 33/102 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI + R N TQ+++ + S ++ FE G SI + L + D+ Sbjct: 6 IGKRIAEARINLNITQEQLEELSGFSVSTISRFETGRTQPSIENLIKLSKVLNVGIDYFL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + K + + + +I Sbjct: 66 YDLIPHNETIQSPTVKDAVTVLSQMNERQAQYMLDIIKIYQA 107 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG R+ R + ++Q + +L G ST+S +E GRT P I+ K+ +V Sbjct: 1 MKKNTIGKRIAEARINLNITQEQLEELSGFSVSTISRFETGRTQPSIENLIKLSKVLNVG 60 Query: 169 LDWIYFG----DEVIVPKSIKRA 187 +D+ + +E I ++K A Sbjct: 61 IDYFLYDLIPHNETIQSPTVKDA 83 >gi|321314262|ref|YP_004206549.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5] gi|320020536|gb|ADV95522.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5] Length = 129 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K +R Q+E+A + +E G + + N +E++ D++ Sbjct: 2 NFSIRLKKLRDGKKMNQQEVADNLGIARTTYASYEQGKREPDHETLVKIANFFEVTVDYL 61 Query: 91 YDGEVIDRR 99 + + Sbjct: 62 LGHQPNSKP 70 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R K M+Q E LG+ +T ++YEQG+ P+ + KI + +D+ Sbjct: 1 MNFSIRLKKLRDGKKMNQQEVADNLGIARTTYASYEQGKREPDHETLVKIANFFEVTVDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + P + Sbjct: 61 LLGHQPNSKPVVHEEK 76 >gi|319399924|gb|EFV88170.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] Length = 189 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V +IK R+ + +Q+ +A ++ +EN I L + +++S D + Sbjct: 2 NVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + + +++ K LD + + Sbjct: 62 VEDDLKNVQIKNIK--KELDFWTRMMII 87 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + + + T+SN+E ++ P+I + Q+ K LD Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 172 IYFGD 176 + D Sbjct: 61 LVEDD 65 >gi|257063253|ref|YP_003142925.1| hypothetical protein Shel_05170 [Slackia heliotrinireducens DSM 20476] gi|256790906|gb|ACV21576.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM 20476] Length = 436 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I +RK TQ E+A AV+ +E G S+ L + +S D + Sbjct: 6 FGNYIFHLRKQAGLTQAELAKLVGVTNKAVSKWEVGKSKPSVESVRKLSGLFHVSVDELL 65 Query: 92 D 92 Sbjct: 66 R 66 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 37/65 (56%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ YA G + +RK G++Q E KL+G+ N +S +E G++ P ++ RK+ + Sbjct: 1 MNDYAFGNYIFHLRKQAGLTQAELAKLVGVTNKAVSKWEVGKSKPSVESVRKLSGLFHVS 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDELL 65 >gi|163736370|ref|ZP_02143789.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107] gi|163741095|ref|ZP_02148487.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161385448|gb|EDQ09825.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161390240|gb|EDQ14590.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107] Length = 207 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA + T + A A S ++ ENG S + L +IS + Sbjct: 26 DLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLQISVPQL 85 Query: 91 YDGEVIDRRYEDVTNKK 107 + D+ +T K Sbjct: 86 FTQPQRDQVNGRLTVTK 102 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + G+ STLS E G+ P + +K+ + + ++ Sbjct: 29 ARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLQISVPQLFT 87 >gi|145221887|ref|YP_001132565.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315446377|ref|YP_004079256.1| XRE family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145214373|gb|ABP43777.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] gi|315264680|gb|ADU01422.1| transcriptional regulator, XRE family [Mycobacterium sp. Spyr1] Length = 222 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 37/95 (38%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 P L + + ++ E + +G ++ +R+ T E A ++ ++ Sbjct: 12 PLLRNTSGTARDRDPGAPVEELEIESAIGRNVRLLRQQQGLTVAETAARVGISKAMMSKI 71 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 EN S S+ L +++ ++ G ++R Sbjct: 72 ENAQTSCSLSTLALLAKGFDVPVTSLFRGADVERP 106 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG ++ +R+ +G++ E +G+ + +S E +T + + + + + Sbjct: 38 AIGRNVRLLRQQQGLTVAETAARVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPVTSL 97 Query: 173 YFGDEVIVPKS-IKRAKGNQSSKKSKKDKKS 202 + G +V P + +K G + ++ ++ Sbjct: 98 FRGADVERPAAFVKAGTGARIVREGTREGHE 128 >gi|330839181|ref|YP_004413761.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|329746945|gb|AEC00302.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 207 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST-SIRYALYLRNEYEISFDW 89 G ++K +R+ ++ TQ ++A + A++ +EN + L +EI+ D Sbjct: 2 KFGEKLKALREKHHLTQTDVAKELGVTQRAISYYENNNVAPNDPEALNKLAKLFEITLDE 61 Query: 90 IYDGEVIDRRYEDVTNKKRLD 110 + + + + + K LD Sbjct: 62 LLNNDGQKSKLHKLIEKLLLD 82 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP-EIKPARKIKQVTKKHLD 170 G +LK++R+ ++Q + K LG+ +S YE P + + K+ ++ + LD Sbjct: 1 MKFGEKLKALREKHHLTQTDVAKELGVTQRAISYYENNNVAPNDPEALNKLAKLFEITLD 60 Query: 171 WIYFGD 176 + D Sbjct: 61 ELLNND 66 >gi|291562330|emb|CBL41146.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] Length = 96 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K+ G R+ D+R + TQ+E+A+ + V+ ENG + SI + L +S D Sbjct: 6 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERNCSIDLLIELSCILHVSTD 65 Query: 89 WIYDGEVIDRRYEDVT 104 ++ G + Sbjct: 66 YLLMGSEPSKEEVKND 81 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVT 165 D G RL +R +G++Q E LG+ +S E G I ++ + Sbjct: 1 MYFDAKEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERNCSIDLLIELSCIL 60 Query: 166 KKHLDWIYFGDEVIVPKS 183 D++ G E + Sbjct: 61 HVSTDYLLMGSEPSKEEV 78 >gi|210611542|ref|ZP_03288946.1| hypothetical protein CLONEX_01136 [Clostridium nexile DSM 1787] gi|210151943|gb|EEA82950.1| hypothetical protein CLONEX_01136 [Clostridium nexile DSM 1787] Length = 194 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK R+ +Q+E+A+ ++ +E ++ + L N + +S D Sbjct: 2 DIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDNF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + R + L + Sbjct: 62 IKEDIKEMREIVEKATIKKFNVISVVFLIEL 92 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++K R+ + +SQ E + + T+SN+E ++ P++K + + LD D Sbjct: 6 QIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDNFIKED 65 Query: 177 EVIVPKSIKRA 187 + + +++A Sbjct: 66 IKEMREIVEKA 76 >gi|192359942|ref|YP_001982170.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107] gi|190686107|gb|ACE83785.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107] Length = 201 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 4/107 (3%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 +I P + + D+G ++K IR+A+N +Q+E+A A S++++ E G S S++ Sbjct: 6 DTVIPPSLDSHM-DLGRKLKAIREAHNLSQRELAKRAGITNSSISMIEQGQVSPSVQSLE 64 Query: 78 YLRNEYEISFDWIYDGE---VIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + +S + + + D GA ++ + Sbjct: 65 RILTAFPLSLAEFFSPGGILPAPVLITRQLLELQQDNQVYGATIQHL 111 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +LK+IR+ +SQ E K G+ NS++S EQG+ P ++ +I L Sbjct: 16 HMDLGRKLKAIREAHNLSQRELAKRAGITNSSISMIEQGQVSPSVQSLERILTAFPLSLA 75 Query: 171 WIY 173 + Sbjct: 76 EFF 78 >gi|120406457|ref|YP_956286.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959275|gb|ABM16280.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 222 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 36/95 (37%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 P L + + ++ E + +G ++ +R T E A ++ ++ Sbjct: 12 PLLRNTSGTARDRDPAAPVEELEIEAAIGRNVRLLRLQQGLTVAETAARVGISKAMMSKI 71 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 EN S S+ L +++ ++ G ++R Sbjct: 72 ENAQTSCSLSTLALLAKGFDVPVTSLFRGADVERP 106 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG ++ +R +G++ E +G+ + +S E +T + + + + + Sbjct: 38 AIGRNVRLLRLQQGLTVAETAARVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPVTSL 97 Query: 173 YFGDEVIVPKS-IKRAKGNQSSKKSKKDKKS 202 + G +V P + +K G + ++ ++ Sbjct: 98 FRGADVERPAAFVKAGTGARIVREGTREGHE 128 >gi|323358883|ref|YP_004225279.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323275254|dbj|BAJ75399.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 474 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R A T ++A + S +++ ENG + + E D I Sbjct: 6 IGRRIRQLRTARGLTLDDLATAVGRAPSQMSMIENGRREAKLTLLQAIARALECKLDQIL 65 Query: 92 DGEVIDRRYEDVTNKKR 108 D E +D R + +R Sbjct: 66 DAEPLDARSTLELSVER 82 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 36/77 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG R++ +R +G++ + +G S +S E GR ++ + I + + Sbjct: 1 MDTLTIGRRIRQLRTARGLTLDDLATAVGRAPSQMSMIENGRREAKLTLLQAIARALECK 60 Query: 169 LDWIYFGDEVIVPKSIK 185 LD I + + +++ Sbjct: 61 LDQILDAEPLDARSTLE 77 >gi|310659824|ref|YP_003937545.1| hypothetical protein CLOST_2525 [Clostridium sticklandii DSM 519] gi|308826602|emb|CBH22640.1| protein of unknown function [Clostridium sticklandii] Length = 102 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R+ + TQ+E+A N S + E + SI+ + + + ++ Sbjct: 3 IGERIRQLRRIKDVTQRELAESVNFSHSYIGDLERNRTNPSIKALEIIAEYFNVDTSYLI 62 Query: 92 DGE 94 E Sbjct: 63 GSE 65 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R++ +R+ K ++Q E + + +S + + E+ RT P IK I + + Sbjct: 1 MTIGERIRQLRRIKDVTQRELAESVNFSHSYIGDLERNRTNPSIKALEIIAEYFNVDTSY 60 Query: 172 IYFGD 176 + + Sbjct: 61 LIGSE 65 >gi|302672228|ref|YP_003832188.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396701|gb|ADL35606.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 277 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I +RK TQ ++A N + A++ +E G L L I+ + + Sbjct: 7 GKFIAGLRKEKGLTQAQIAEMLNITDRAISKWETGKNMPDSSIMLELCGILGITVNELLS 66 Query: 93 GEVIDRRYEDVTNKKRL 109 GE I+ + + + L Sbjct: 67 GERIEMKDFENKANENL 83 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 46/93 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G + +RK+KG++Q + ++L + + +S +E G+ +P+ ++ + Sbjct: 1 MDQIKTGKFIAGLRKEKGLTQAQIAEMLNITDRAISKWETGKNMPDSSIMLELCGILGIT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 ++ + G+ + + +A N K ++++ Sbjct: 61 VNELLSGERIEMKDFENKANENLLELKRNEERR 93 >gi|257090410|ref|ZP_05584771.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|256999222|gb|EEU85742.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|315034707|gb|EFT46639.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0027] gi|315578682|gb|EFU90873.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] Length = 125 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R + NKTQ+++A +A + FEN + L ++++ D++ Sbjct: 2 LGNKLKQLRISKNKTQQQVADYLGITRAAYSHFENNRNDPDKETLVKLAILFDVTTDFLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPY 112 G + LD Sbjct: 62 -GRNHTPEWASKDEVIELDKI 81 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +LK +R K +Q + LG+ + S++E R P+ + K+ + D++ Sbjct: 1 MLGNKLKQLRISKNKTQQQVADYLGITRAAYSHFENNRNDPDKETLVKLAILFDVTTDFL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|291087268|ref|ZP_06571878.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] gi|291075626|gb|EFE12990.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] Length = 96 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K+ G R+ D+R + TQ+E+A+ + V+ ENG S SI + L +S D Sbjct: 6 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTD 65 Query: 89 WIYDGEVIDRRYEDVT 104 ++ G + Sbjct: 66 YLLMGSEPSKEEVKND 81 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVT 165 D G RL +R +G++Q E LG+ +S E G I ++ + Sbjct: 1 MYFDAKEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCIL 60 Query: 166 KKHLDWIYFGDEVIVPKS 183 D++ G E + Sbjct: 61 HVSTDYLLMGSEPSKEEV 78 >gi|225389221|ref|ZP_03758945.1| hypothetical protein CLOSTASPAR_02967 [Clostridium asparagiforme DSM 15981] gi|225044715|gb|EEG54961.1| hypothetical protein CLOSTASPAR_02967 [Clostridium asparagiforme DSM 15981] Length = 156 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I ++RK + TQ ++ ++ +ENG + L +++ + + Sbjct: 7 GKFIAELRKEKSLTQAQLGDLLGVTNKTISRWENGNYMPDLAVLQSLCAVLDVNINEMIS 66 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 G +D L AR + R+ K Sbjct: 67 GRRLDEADFRQQADNNLLLSLDQAR-RMRREYK 98 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 5/98 (5%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G + +RK+K ++Q + G LLG+ N T+S +E G +P++ + + V + Sbjct: 1 MDQVQTGKFIAELRKEKSLTQAQLGDLLGVTNKTISRWENGNYMPDLAVLQSLCAVLDVN 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN-----QSSKKSKKDKK 201 ++ + G + ++A N +++ +++ K Sbjct: 61 INEMISGRRLDEADFRQQADNNLLLSLDQARRMRREYK 98 >gi|163746251|ref|ZP_02153609.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] gi|161380136|gb|EDQ04547.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] Length = 207 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++++RKA N T ++ A A S ++ ENG+ S + L EI+ + Sbjct: 26 DLGARVRELRKARNWTLEQAARQAGLARSTLSKIENGLMSPTYDALKKLAVGLEITVPQL 85 Query: 91 YD 92 + Sbjct: 86 FT 87 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF- 174 AR++ +RK + + + + G+ STLS E G P +K+ + + ++ Sbjct: 29 ARVRELRKARNWTLEQAARQAGLARSTLSKIENGLMSPTYDALKKLAVGLEITVPQLFTP 88 Query: 175 --GDEVIVPKSIKRAKG 189 G+++ ++ RA+ Sbjct: 89 PAGEKITGRMAVTRAEE 105 >gi|154500782|ref|ZP_02038820.1| hypothetical protein BACCAP_04460 [Bacteroides capillosus ATCC 29799] gi|150270399|gb|EDM97722.1| hypothetical protein BACCAP_04460 [Bacteroides capillosus ATCC 29799] Length = 103 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 33/72 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I+ +R+ + TQ+++A + +ENG+ + + + L + Y+ S D++ Sbjct: 29 IRALREDRDWTQQQVADMLYLNRRTYSAYENGVNTITPELLIQLADLYQTSVDYLLGLTS 88 Query: 96 IDRRYEDVTNKK 107 + Y N+ Sbjct: 89 VKEPYPRSKNQS 100 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++++R+D+ +Q + +L + T S YE G + ++ + + +D++ Sbjct: 29 IRALREDRDWTQQQVADMLYLNRRTYSAYENGVNTITPELLIQLADLYQTSVDYLLGLTS 88 Query: 178 VIVPKSIKRAKGNQSS 193 V P R+K SS Sbjct: 89 VKEPYP--RSKNQSSS 102 >gi|153814064|ref|ZP_01966732.1| hypothetical protein RUMTOR_00272 [Ruminococcus torques ATCC 27756] gi|317499821|ref|ZP_07958059.1| hypothetical protein HMPREF1026_00001 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087904|ref|ZP_08336828.1| hypothetical protein HMPREF1025_00411 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848460|gb|EDK25378.1| hypothetical protein RUMTOR_00272 [Ruminococcus torques ATCC 27756] gi|316898723|gb|EFV20756.1| hypothetical protein HMPREF1026_00001 [Lachnospiraceae bacterium 8_1_57FAA] gi|330409391|gb|EGG88837.1| hypothetical protein HMPREF1025_00411 [Lachnospiraceae bacterium 3_1_46FAA] Length = 194 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK R+ +Q+E+A+ ++ +E I+ + L N + +S D Sbjct: 2 DIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDNF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + + + L + Sbjct: 62 IKEDIKEMKEIVEKATIKKFNVISVVFLIEL 92 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++K R+ + +SQ E + + T+SN+E ++ P+IK + + LD D Sbjct: 6 QIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDNFIKED 65 Query: 177 EVIVPKSIKRA 187 + + +++A Sbjct: 66 IKEMKEIVEKA 76 >gi|316932003|ref|YP_004106985.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599717|gb|ADU42252.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 104 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD +R++ R+ +Q E+A A SA+ FE G S L ++S D+ Sbjct: 8 KDFASRLRKTRETRELSQSELAREAGMQPSAIAHFEAGRRKPSFDNVRALAKALKVSADY 67 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + D D I + Sbjct: 68 LLGAQAATTAFRDEDKLSAKDRLFIQNII 96 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +RL+ R+ + +SQ E + GM S ++++E GR P R + + K D++ Sbjct: 10 FASRLRKTRETRELSQSELAREAGMQPSAIAHFEAGRRKPSFDNVRALAKALKVSADYLL 69 >gi|251772558|gb|EES53124.1| transcriptional regulator, XRE family [Leptospirillum ferrodiazotrophum] Length = 181 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K V R++++RK N + + +A A S+++ E+G S SI + E+ Sbjct: 1 MKQVSERLRELRKNQNLSLRTLAKKAGISASSLSQIESGQVSPSIATLEKVCAALELPIT 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 ++D + + + R Y+ + Sbjct: 61 TLFDETPGESDPLVMPARNRRRVYSTTSH 89 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL+ +RK++ +S K G+ S+LS E G+ P I K+ + + Sbjct: 1 MKQVSERLRELRKNQNLSLRTLAKKAGISASSLSQIESGQVSPSIATLEKVCAALELPIT 60 Query: 171 WIYFGDEVIVPKS 183 ++ DE Sbjct: 61 TLF--DETPGESD 71 >gi|218663328|ref|ZP_03519258.1| probable transcriptional regulator protein, LacI family [Rhizobium etli IE4771] Length = 190 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +Q + +G RI+ +R T ++A + + ++ E S + + Sbjct: 2 EQQLEQAIGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALG 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +S + E ++++ Sbjct: 62 LSLSAFFAEEGQQASPLARRQEQQV 86 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R++++R +KG++ + G+ + +S E+ P +I L Sbjct: 8 AIGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAF 67 Query: 173 YFGDEVIVPKSIKRAKGN 190 + + +R + Sbjct: 68 FAEEGQQASPLARRQEQQ 85 >gi|160879161|ref|YP_001558129.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427827|gb|ABX41390.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 370 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 31/84 (36%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +I +RK Q+E+A +V+ +E I + + +++S D + + Sbjct: 8 KIAQLRKRKGVNQQELADFLGVTFQSVSKWETKTTLPDITLLPLIADYFQVSVDELLGLK 67 Query: 95 VIDRRYEDVTNKKRLDPYAIGARL 118 I N + + A + Sbjct: 68 PIKDLQYMPRNTDNRENWKDRADV 91 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +RK KG++Q E LG+ ++S +E T+P+I I + +D + Sbjct: 9 IAQLRKRKGVNQQELADFLGVTFQSVSKWETKTTLPDITLLPLIADYFQVSVDELLGLKP 68 Query: 178 VIVPKSIKRAKGNQSSKKSKKD 199 + + + R N+ + K + D Sbjct: 69 IKDLQYMPRNTDNRENWKDRAD 90 >gi|310830109|ref|YP_003962466.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308741843|gb|ADO39503.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 111 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G R++ RK + TQ ++A A + +++ E G + + L N +S D Sbjct: 4 KYLGQRLRQFRKDAHLTQNQLAKKAGITPTYLSIIERGAQLPRLETFINLANVLSVSADD 63 Query: 90 IYDGEVIDRRYE 101 + + + R Sbjct: 64 LLMEDQTESRKN 75 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 36/76 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G RL+ RKD ++Q + K G+ + LS E+G +P ++ + V Sbjct: 1 MNTKYLGQRLRQFRKDAHLTQNQLAKKAGITPTYLSIIERGAQLPRLETFINLANVLSVS 60 Query: 169 LDWIYFGDEVIVPKSI 184 D + D+ K++ Sbjct: 61 ADDLLMEDQTESRKNL 76 >gi|116490172|ref|YP_809716.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1] gi|116090897|gb|ABJ56051.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1] Length = 192 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 45/86 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + S R++ GM+Q + +LL + LSN+E+G+ P++ ++ ++ LD Sbjct: 1 MVFSEIISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDV 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD+ ++ K + ++ + KK + Sbjct: 61 LIKGDKKVMKKVQEDSQDLRKQKKLR 86 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I R+ TQ ++A A++ +E G + + L Y++S D + G+ Sbjct: 7 ISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDVLIKGDK 66 Query: 96 IDRRYEDVTNK 106 + ++ Sbjct: 67 KVMKKVQEDSQ 77 >gi|16077549|ref|NP_388363.1| phage element (ICEBs1)transcriptional regulator (Xre family) [Bacillus subtilis subsp. subtilis str. 168] gi|221308307|ref|ZP_03590154.1| hypothetical protein Bsubs1_02728 [Bacillus subtilis subsp. subtilis str. 168] gi|221312629|ref|ZP_03594434.1| hypothetical protein BsubsN3_02704 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317552|ref|ZP_03598846.1| hypothetical protein BsubsJ_02663 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321828|ref|ZP_03603122.1| hypothetical protein BsubsS_02734 [Bacillus subtilis subsp. subtilis str. SMY] gi|38503281|sp|P96631|IMMR_BACSU RecName: Full=HTH-type transcriptional regulator immR gi|1881293|dbj|BAA19320.1| ydcN [Bacillus subtilis] gi|2632782|emb|CAB12289.1| phage element (ICEBs1)transcriptional regulator (Xre family) [Bacillus subtilis subsp. subtilis str. 168] gi|291482893|dbj|BAI83968.1| hypothetical protein BSNT_00832 [Bacillus subtilis subsp. natto BEST195] Length = 127 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+ R+ TQKE A N + ++ +E L L N Y +S D++ Sbjct: 3 LGKRLKEARQKAGYTQKEAAEKLNIGNNNLSNYERDYRDPDTDTLLKLSNLYNVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLD 110 + + ++ E K ++ Sbjct: 63 GKDEVSKKNETDLLNKTIN 81 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G RLK R+ G +Q E + L + N+ LSNYE+ P+ K+ + D+ Sbjct: 1 MSLGKRLKEARQKAGYTQKEAAEKLNIGNNNLSNYERDYRDPDTDTLLKLSNLYNVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DEV N++ ++ ++ K Sbjct: 61 LLGKDEVSKKNETDLL--NKTINEAIQELKDE 90 >gi|212711887|ref|ZP_03320015.1| hypothetical protein PROVALCAL_02962 [Providencia alcalifaciens DSM 30120] gi|212685409|gb|EEB44937.1| hypothetical protein PROVALCAL_02962 [Providencia alcalifaciens DSM 30120] Length = 103 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ RK + +A + + ++ +ENG+ I + L + +W + Sbjct: 7 IGLRIKNRRKELGLSGANLADRLHLSQQQISRYENGVNKIPIDHLLDISEILMCPIEWFF 66 Query: 92 DGEVIDRRYED 102 +G + + D Sbjct: 67 NGYKSEIKNND 77 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K+ RK+ G+S L + +S YE G I I ++ ++W + G Sbjct: 11 IKNRRKELGLSGANLADRLHLSQQQISRYENGVNKIPIDHLLDISEILMCPIEWFFNG 68 >gi|168206998|ref|ZP_02633003.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170661596|gb|EDT14279.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 340 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 W +K RK N TQ ++A N SA++ +E G SI + + L NE S D Sbjct: 3 WTVFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSID 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ G + + N + D + K Sbjct: 63 NLF-GFNREVTIDLPQNLTKEDLKPLEKEFKK 93 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D LK RKD ++Q + K L + S +S YE+G P I + Sbjct: 1 MDWTVFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCS 60 Query: 169 LDWIYFGDEVI---VPKSIKRAKGNQSSKKSKKDK 200 +D ++ + + +P+++ + K+ KK+ Sbjct: 61 IDNLFGFNREVTIDLPQNLTKEDLKPLEKEFKKEN 95 >gi|57641274|ref|YP_183752.1| transcription regulator [Thermococcus kodakarensis KOD1] gi|57159598|dbj|BAD85528.1| predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus kodakarensis KOD1] Length = 65 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R+ TQ+E+A + E G S++ A + + ++ + I+ Sbjct: 3 NRLRELREERGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGLNIEDIFIY 62 Query: 94 EVI 96 E Sbjct: 63 EGD 65 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 37/63 (58%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+++G++Q E K LG+ T+ E+G+ P +K A KI + +++ I+ Sbjct: 1 MKNRLRELREERGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGLNIEDIF 60 Query: 174 FGD 176 + Sbjct: 61 IYE 63 >gi|329769474|ref|ZP_08260885.1| hypothetical protein HMPREF0433_00649 [Gemella sanguinis M325] gi|328838805|gb|EGF88401.1| hypothetical protein HMPREF0433_00649 [Gemella sanguinis M325] Length = 130 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G I +RK TQK++A N + AV+ +E + + + +S + Sbjct: 3 NKSMGDIISTLRKEKGMTQKDLADMLNITDKAVSKWERNIAFPDTATLPKIAEIFGVSVE 62 Query: 89 WIYDGEVID 97 + + + I Sbjct: 63 ELMNAKSIP 71 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 34/65 (52%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + ++G + ++RK+KGM+Q + +L + + +S +E+ P+ KI ++ Sbjct: 1 MTNKSMGDIISTLRKEKGMTQKDLADMLNITDKAVSKWERNIAFPDTATLPKIAEIFGVS 60 Query: 169 LDWIY 173 ++ + Sbjct: 61 VEELM 65 >gi|313905283|ref|ZP_07838650.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469894|gb|EFR65229.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 184 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 40/87 (45%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E KD+G RIKD+R+ N TQ+E+A A + ++ E G+ S S+ +++ Sbjct: 2 EPIDLNKDIGRRIKDLRQRNGLTQQELADRAELTKGFISQLERGLGSPSVETLMHMIEIL 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLD 110 + + E + + ++ D Sbjct: 62 GSNPADFFKDEGEQVVFTEEDYSEKTD 88 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 4/84 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +R+ G++Q E + +S E+G P ++ + ++ + + Sbjct: 12 RRIKDLRQRNGLTQQELADRAELTKGFISQLERGLGSPSVETLMHMIEILGSNPADFFKD 71 Query: 176 DEV----IVPKSIKRAKGNQSSKK 195 + ++ N +S+K Sbjct: 72 EGEQVVFTEEDYSEKTDVNGNSRK 95 >gi|154506669|ref|ZP_02043126.1| hypothetical protein RUMGNA_03936 [Ruminococcus gnavus ATCC 29149] gi|153793318|gb|EDN75741.1| hypothetical protein RUMGNA_03936 [Ruminococcus gnavus ATCC 29149] Length = 68 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK +R+ + TQK + N ++ + +ENG I + L + +S D+I Sbjct: 5 ERIKALREDRDLTQKNICAYLNIAQNTYSQYENGKREIPISILIKLCLYFGVSSDYIL 62 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R+K++R+D+ ++Q L + +T S YE G+ I K+ D+ Sbjct: 1 MEYWERIKALREDRDLTQKNICAYLNIAQNTYSQYENGKREIPISILIKLCLYFGVSSDY 60 Query: 172 IY 173 I Sbjct: 61 IL 62 >gi|284045383|ref|YP_003395723.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949604|gb|ADB52348.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 253 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KDVG R++ R+A +E+A S ++ E G + SI + +E +S D Sbjct: 21 KDVGARLRRDREARGVGVRELARRIGVSPSLISAIELGKANPSIGTLYQIVDELNLSVDE 80 Query: 90 IY 91 + Sbjct: 81 LM 82 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ARL+ R+ +G+ E + +G+ S +S E G+ P I +I +D + Sbjct: 25 ARLRRDREARGVGVRELARRIGVSPSLISAIELGKANPSIGTLYQIVDELNLSVDELMLE 84 Query: 176 DEVIVPKSIKR 186 ++R Sbjct: 85 GATGPDTVVRR 95 >gi|257870000|ref|ZP_05649653.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804164|gb|EEV32986.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 112 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 3/89 (3%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK +R TQ+E+A A +E+G L + + +S D++ Sbjct: 6 IKKLRLEKKLTQQEVADKIGITRPAYTAYESGKREPDFSMLQVLADLFGVSTDYLLGRSD 65 Query: 96 IDRRYEDVTNK---KRLDPYAIGARLKSI 121 Y V + +D +K I Sbjct: 66 KRHLYPKVESDLISSHIDESISEEGIKEI 94 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +R +K ++Q E +G+ + YE G+ P+ + + + D++ Sbjct: 1 MFPQIIKKLRLEKKLTQQEVADKIGITRPAYTAYESGKREPDFSMLQVLADLFGVSTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|325842510|ref|ZP_08167681.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325489554|gb|EGC91918.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 367 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I RK TQ E+A ++A++ +E G I L + +S D + Sbjct: 5 NVGKMIILKRKEKKITQDELAKYIGVSKAAISKWETGQSYPDITLLPILAAYFNMSIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E + + RL Sbjct: 65 IGYEPQMVKEDIQKLYVRL 83 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 38/78 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G + RK+K ++Q E K +G+ + +S +E G++ P+I + Sbjct: 1 MKEINVGKMIILKRKEKKITQDELAKYIGVSKAAISKWETGQSYPDITLLPILAAYFNMS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + +V + I++ Sbjct: 61 IDELIGYEPQMVKEDIQK 78 >gi|322389322|ref|ZP_08062881.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] gi|321143986|gb|EFX39405.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] Length = 291 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K IRK +Q+ +A AV +E G I + + N + IS D + Sbjct: 3 FAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENIISISNLFNISIDELI 62 Query: 92 DGE 94 E Sbjct: 63 CNE 65 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LKSIRK GMSQ + +G+ ++ +E G IP+I+ I + +D Sbjct: 1 MTFAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENIISISNLFNISIDE 60 Query: 172 IYFGDEVIVPKS 183 + + + S Sbjct: 61 LICNERTTLKTS 72 >gi|163851665|ref|YP_001639708.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|218530471|ref|YP_002421287.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240138832|ref|YP_002963307.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254561435|ref|YP_003068530.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|163663270|gb|ABY30637.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] gi|218522774|gb|ACK83359.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] gi|240008804|gb|ACS40030.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254268713|emb|CAX24672.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 201 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 29/68 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E R K +G +++ +R+ + + ++ A ++ ENG S S+ + + Sbjct: 12 EERPLEKALGHQVRLLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIASAL 71 Query: 84 EISFDWIY 91 + ++ Sbjct: 72 NVPITALF 79 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G +++ +R+++ +S + G G+ +S E G P + I + + Sbjct: 19 ALGHQVRLLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIASALNVPITAL 78 Query: 173 Y-FGDEVIVPKSIKRAKGNQSSKKSKK 198 + +E +KR +G ++ K Sbjct: 79 FAAFEETRDCSYVKRGQGVPIERRGTK 105 >gi|229491001|ref|ZP_04384834.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229322117|gb|EEN87905.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 194 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 34/73 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ + T +++ + S ++ E+G ++ L + + + D + Sbjct: 13 IGPRLRALRQQSEMTLADLSEATDISVSTLSRLESGTRRANLELLLPIAKAHGVPLDDLV 72 Query: 92 DGEVIDRRYEDVT 104 + ++ D R + Sbjct: 73 NSKIKDPRVREEP 85 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+++R+ M+ + + + STLS E G ++ I + LD + Sbjct: 17 LRALRQQSEMTLADLSEATDISVSTLSRLESGTRRANLELLLPIAKAHGVPLDDLV 72 >gi|315644486|ref|ZP_07897618.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315279993|gb|EFU43290.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 272 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 1/82 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I RK TQ+ +A AV+ +E G + L E+S D ++ Sbjct: 5 LAKNINRYRKERGLTQEALAHKLGVTFQAVSKWETGQTMPDVALLPELSQLLEVSMDKLF 64 Query: 92 DGEVI-DRRYEDVTNKKRLDPY 112 K D Y Sbjct: 65 GYSSTGKSLSIYEEEYKTPDYY 86 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 33/61 (54%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + + RK++G++Q LG+ +S +E G+T+P++ ++ Q+ + +D + Sbjct: 4 MLAKNINRYRKERGLTQEALAHKLGVTFQAVSKWETGQTMPDVALLPELSQLLEVSMDKL 63 Query: 173 Y 173 + Sbjct: 64 F 64 >gi|295398102|ref|ZP_06808151.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] gi|294973621|gb|EFG49399.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] Length = 263 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 38/92 (41%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K +G RIK IRK +Q E + +SAV+ +ENG + + + N + Sbjct: 2 EQNKRLGERIKKIRKKLGMSQLEFSKAIGATKSAVSNWENGYNAPNNERIKAIANLGNTT 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 D + G + DR + D +L Sbjct: 62 VDALLYGSLNDRVGNLLNAAIDSDNPTYNKKL 93 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K IRK GMSQ+EF K +G S +SN+E G P + + I + +D + +G Sbjct: 9 ERIKKIRKKLGMSQLEFSKAIGATKSAVSNWENGYNAPNNERIKAIANLGNTTVDALLYG 68 >gi|188591420|ref|YP_001796019.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis] gi|170938815|emb|CAP63813.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis LMG 19424] Length = 120 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +R++ R+ Q E+A A SA++ FE G S L + +++ D++ Sbjct: 17 SRLRTAREYRGLNQGELAQKAGMQPSAISHFETGTRKPSFDNLRILADSLDVTTDYLL 74 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +RL++ R+ +G++Q E + GM S +S++E G P R + D++ Sbjct: 14 VFPSRLRTAREYRGLNQGELAQKAGMQPSAISHFETGTRKPSFDNLRILADSLDVTTDYL 73 Query: 173 YFGDEVIV 180 E Sbjct: 74 LGRVEDFK 81 >gi|170016280|ref|YP_001723002.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169804962|gb|ACA83578.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 193 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%) Query: 123 KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPK 182 +SQ + K L + T+SN+E R +P+I+ KI +V LD + G+ + K Sbjct: 1 MRHKLSQRQLAKKLNVSPKTISNWENERNLPDIELIIKISKVLDVTLDELITGNSQLENK 60 Query: 183 SIKRA 187 IK + Sbjct: 61 LIKDS 65 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 25/72 (34%) Query: 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 + +Q+++A N ++ +EN I + + +++ D + G Sbjct: 2 RHKLSQRQLAKKLNVSPKTISNWENERNLPDIELIIKISKVLDVTLDELITGNSQLENKL 61 Query: 102 DVTNKKRLDPYA 113 + K A Sbjct: 62 IKDSHKVFRDNA 73 >gi|227819893|ref|YP_002823864.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338892|gb|ACP23111.1| putative transcriptional regulator Xre familiy [Sinorhizobium fredii NGR234] Length = 201 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 34/87 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+++RK T +++A A+ ++ E I + + + +W + Sbjct: 23 IGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPIGVLKKISDTLGVHMNWFF 82 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + + +DV + L Sbjct: 83 HGSDVPAQEKDVVVRSHNRRKFTFTGL 109 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 40/88 (45%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + ++ AIG +++ +RK KG++ + + LS E+ +T I +KI Sbjct: 16 EAVEEMAIGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPIGVLKKISDTLG 75 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSK 194 H++W + G +V + + + K Sbjct: 76 VHMNWFFHGSDVPAQEKDVVVRSHNRRK 103 >gi|225016323|ref|ZP_03705515.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum DSM 5476] gi|224950928|gb|EEG32137.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum DSM 5476] Length = 119 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 45/91 (49%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +G+RI+ +R+ +Q+E+A A+ + + E + + ++ ++ + Sbjct: 7 MSELSRVLGSRIRTLRQQKGMSQEELAFKASLSAAHLGQIERALKNPTVDTVSHIADALG 66 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 I+ D ++ ++ + E+VT K L A Sbjct: 67 ITVDQLFQFDLPKQERENVTANKILAQLADM 97 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R++++R+ KGMSQ E + + L E+ P + I +D ++ Sbjct: 16 SRIRTLRQQKGMSQEELAFKASLSAAHLGQIERALKNPTVDTVSHIADALGITVDQLFQF 75 Query: 176 D 176 D Sbjct: 76 D 76 >gi|167628192|ref|YP_001678691.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] gi|167590932|gb|ABZ82680.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] Length = 193 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 10/85 (11%), Positives = 27/85 (31%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +RK +Q E+ +++ +E + I + + + +S D++ Sbjct: 7 ERLRGLRKGRKLSQNELGAALGLSRGSISYYEKQSRTAPIDVLYVVADYFNVSADFLLGL 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + L Sbjct: 67 KEEPDPDIAQLKPGPHRSSLYPPPL 91 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 31/81 (38%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +RK + +SQ E G LG+ ++S YE+ I + D++ Sbjct: 4 CFSERLRGLRKGRKLSQNELGAALGLSRGSISYYEKQSRTAPIDVLYVVADYFNVSADFL 63 Query: 173 YFGDEVIVPKSIKRAKGNQSS 193 E P + G S Sbjct: 64 LGLKEEPDPDIAQLKPGPHRS 84 >gi|36958742|gb|AAQ87210.1| Transcriptional regulator [Sinorhizobium fredii NGR234] Length = 181 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 34/87 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+++RK T +++A A+ ++ E I + + + +W + Sbjct: 3 IGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPIGVLKKISDTLGVHMNWFF 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + + +DV + L Sbjct: 63 HGSDVPAQEKDVVVRSHNRRKFTFTGL 89 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG +++ +RK KG++ + + LS E+ +T I +KI H++W Sbjct: 1 MAIGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPIGVLKKISDTLGVHMNW 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + G +V + + + K Sbjct: 61 FFHGSDVPAQEKDVVVRSHNRRK 83 >gi|323156532|gb|EFZ42685.1| repressor protein C2 [Escherichia coli EPECa14] Length = 211 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 29/87 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L + S D++ Sbjct: 1 MGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + Y + + + Sbjct: 61 KGEDSLSNIAYHSRHDPRGSYPLISWV 87 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 36/66 (54%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R+++ RK+ + Q GK++G+ N +S +E+ T P + + + + D++ Sbjct: 1 MGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLL 60 Query: 174 FGDEVI 179 G++ + Sbjct: 61 KGEDSL 66 >gi|295107365|emb|CBL04908.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 289 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 P + L+ +R + MSQ + + +G+ +++ +E ++ PE+ KI + LD Sbjct: 16 PMSFRDNLQHLRDLQDMSQADLAQRIGVSRQSVAKWEAEKSYPEMDKLIKICDLFGCSLD 75 Query: 171 WIYFGD 176 + GD Sbjct: 76 DLVRGD 81 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 26/71 (36%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + ++ +R + +Q ++A +V +E + + + + + Sbjct: 11 EREEMPMSFRDNLQHLRDLQDMSQADLAQRIGVSRQSVAKWEAEKSYPEMDKLIKICDLF 70 Query: 84 EISFDWIYDGE 94 S D + G+ Sbjct: 71 GCSLDDLVRGD 81 >gi|293375349|ref|ZP_06621631.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292646105|gb|EFF64133.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 367 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I RK TQ E+A ++A++ +E G I L + +S D + Sbjct: 5 NVGKMIILKRKEKKITQDELAKYIGVSKAAISKWETGQSYPDITLLPILAAYFNMSIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E + + RL Sbjct: 65 IGYEPQMVKEDIQKLYVRL 83 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 38/78 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G + RK+K ++Q E K +G+ + +S +E G++ P+I + Sbjct: 1 MKEINVGKMIILKRKEKKITQDELAKYIGVSKAAISKWETGQSYPDITLLPILAAYFNMS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + +V + I++ Sbjct: 61 IDELIGYEPQMVKEDIQK 78 >gi|269126718|ref|YP_003300088.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311676|gb|ACY98050.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 478 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 8/133 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +R+A T ++ + S ++L ENG + L E+ + + Sbjct: 10 FGQRLRHLRRARGMTLADLGAKVGRAPSQLSLLENGRREPKLSLLKSLAAALEVPVEELL 69 Query: 92 DGEVIDRRYEDVTNKK--RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + RR + + + DP L ++ K + +L + ++ Sbjct: 70 RRQPPSRRAQLEIALEEAQRDPLYRSLGLPYLKVGKRLPNDVIEHIL----ALYGELKRS 125 Query: 150 RTIP--EIKPARK 160 RT P + ARK Sbjct: 126 RTKPTASPEEARK 138 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D G RL+ +R+ +GM+ + G +G S LS E GR P++ + + + Sbjct: 3 SDVDLVTFGQRLRHLRRARGMTLADLGAKVGRAPSQLSLLENGRREPKLSLLKSLAAALE 62 Query: 167 KHLDWIY 173 ++ + Sbjct: 63 VPVEELL 69 >gi|225568854|ref|ZP_03777879.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM 15053] gi|225162353|gb|EEG74972.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM 15053] Length = 138 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ +RK N TQK+++ N A + +E + + LYL Y ++ D + Sbjct: 5 QLANNLRYLRKQNKLTQKDLSEMLNISRQAYSNYETSKRTPDLDSLLYLAGFYNVNLDSL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + D + + I L Sbjct: 65 VLGSLPSPDQADAAASESIAEQKIPYTL 92 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + L+ +RK ++Q + ++L + SNYE + P++ + + Sbjct: 1 MPNIQLANNLRYLRKQNKLTQKDLSEMLNISRQAYSNYETSKRTPDLDSLLYLAGFYNVN 60 Query: 169 LDWIYFG 175 LD + G Sbjct: 61 LDSLVLG 67 >gi|199597611|ref|ZP_03211039.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258509756|ref|YP_003172507.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199591418|gb|EDY99496.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257149683|emb|CAR88656.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259651020|dbj|BAI43182.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 189 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 30/87 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +R TQ ++A V+ +E G ++ L + Y+I+ D + Sbjct: 6 LGNHLKALRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQITVDELL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + A+ + Sbjct: 66 RPVPSKATKKTSARPVTFLGPALAIMI 92 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G LK++R + ++Q + L + T+S +E GR P+++ ++ + Sbjct: 1 MTTSVLGNHLKALRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQIT 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDELL 65 >gi|196042830|ref|ZP_03110069.1| DNA-binding protein [Bacillus cereus 03BB108] gi|229185561|ref|ZP_04312741.1| hypothetical protein bcere0004_31130 [Bacillus cereus BGSC 6E1] gi|196026314|gb|EDX64982.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228597956|gb|EEK55596.1| hypothetical protein bcere0004_31130 [Bacillus cereus BGSC 6E1] Length = 374 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 66 SYKPQMEQEDIKE 78 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKE 78 >gi|154502629|ref|ZP_02039689.1| hypothetical protein RUMGNA_00442 [Ruminococcus gnavus ATCC 29149] gi|153796821|gb|EDN79241.1| hypothetical protein RUMGNA_00442 [Ruminococcus gnavus ATCC 29149] Length = 125 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G RIK++R+ NN +Q ++A S ++ EN S+ + + N I+ D Sbjct: 10 HKQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENAKRKASLESIIRIVNALGITVD 69 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + G + T+ L Sbjct: 70 ELLAGVQLHNPTAYQTDLDLL 90 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + ++ IG R+K +R+ SQ + + + S +S+ E + ++ +I Sbjct: 1 MNESLSSVNHKQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENAKRKASLESIIRI 60 Query: 162 KQVTKKHLDWIYFGDEVIVP 181 +D + G ++ P Sbjct: 61 VNALGITVDELLAGVQLHNP 80 >gi|295094016|emb|CBK83107.1| Predicted transcriptional regulator [Coprococcus sp. ART55/1] Length = 73 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +R+ TQ ++A + + + +E + L + +++S D++ Sbjct: 3 FGEVLKSLREERGVTQDKLAQYLHVNRATIAGYEVKGKKPRYETLIKLADYFDVSIDYLV 62 Query: 92 DGEVID 97 GE Sbjct: 63 TGEENR 68 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 35/66 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G LKS+R+++G++Q + + L + +T++ YE P + K+ +D+ Sbjct: 1 MAFGEVLKSLREERGVTQDKLAQYLHVNRATIAGYEVKGKKPRYETLIKLADYFDVSIDY 60 Query: 172 IYFGDE 177 + G+E Sbjct: 61 LVTGEE 66 >gi|226323100|ref|ZP_03798618.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758] gi|225208290|gb|EEG90644.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758] Length = 316 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + RK G++Q + + L M + ++S +E+G +P++ ++ + + Sbjct: 1 MDLIKIGKYIAEKRKALGLTQKQLAEKLNMSDKSVSKWERGICLPDVSIYMELCSILRIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN--QSSKKSKKDKKS 202 ++ G+++ I+++ N Q +K+SKK +K+ Sbjct: 61 INEFLAGEDIGAENVIEKSDSNLIQITKESKKKQKN 96 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I + RKA TQK++A N + +V+ +E G+C + + L + IS + Sbjct: 5 KIGKYIAEKRKALGLTQKQLAEKLNMSDKSVSKWERGICLPDVSIYMELCSILRISINEF 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 GE I + L Sbjct: 65 LAGEDIGAENVIEKSDSNL 83 >gi|167761228|ref|ZP_02433355.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704] gi|167660894|gb|EDS05024.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704] Length = 234 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ RK + TQ+E+A ++ +E+G + L L + D + G Sbjct: 6 ENLQFYRKKADMTQEELAERMEVSRQTISKWESGATYPEMEKILQLCEMFRCDMDTLIRG 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGA 116 + + ED + A Sbjct: 66 DATESFAEDNAQYDQHKNEFSKA 88 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A L+ RK M+Q E + + + T+S +E G T PE++ ++ ++ + +D Sbjct: 1 MAAFSENLQFYRKKADMTQEELAERMEVSRQTISKWESGATYPEMEKILQLCEMFRCDMD 60 Query: 171 WIYFGD 176 + GD Sbjct: 61 TLIRGD 66 >gi|331090732|ref|ZP_08339579.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399840|gb|EGG79499.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium 2_1_46FAA] Length = 150 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK R+ N TQ+++A + +ENG + A L E ++S D + Sbjct: 3 LSDNIKKFREEKNLTQQQLADKLYVSRQTICRWENGSRCPDLITAKKLALELDVSMDELI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 E ++ + K + RL+ +RK Sbjct: 63 SDEDVNDTRVNYGIWKS-ERIQNRTRLQELRKKL 95 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +K R++K ++Q + L + T+ +E G P++ A+K+ +D Sbjct: 1 MALSDNIKKFREEKNLTQQQLADKLYVSRQTICRWENGSRCPDLITAKKLALELDVSMDE 60 Query: 172 IYFGDEV 178 + ++V Sbjct: 61 LISDEDV 67 >gi|302390667|ref|YP_003826488.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302201295|gb|ADL08865.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 114 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + K +G R+++ RK TQ ++A + ++ +E G +I L N Y S Sbjct: 5 FLKSLGERLQEARKKCGLTQDQVAKILGINKVQLSYYETGAREINITLLQELANLYGYSI 64 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 D+ E ++ + + Sbjct: 65 DYFLGNEDKKEPEVEIAFRADEFCEEDLETI 95 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ RK G++Q + K+LG+ LS YE G I +++ + +D+ Sbjct: 11 ERLQEARKKCGLTQDQVAKILGINKVQLSYYETGAREINITLLQELANLYGYSIDYFLGN 70 Query: 176 DEVIVPKS 183 ++ P+ Sbjct: 71 EDKKEPEV 78 >gi|320007252|gb|ADW02102.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 204 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 8/149 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++D+R+ T + A A + ++ E G S+ L L Y + + Sbjct: 15 IAPRLRDLRRNRGLTLEAAAGRAGLSPAHLSRLETGRRQPSLPMLLGLARVYGTTVSELL 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +R G L R+ G + + +P T + R Sbjct: 75 GEMPPERDAIVRGGPLEGAGGEGGGWL--YRQAGGSGRAMQALRVRVPYGTEGDL--VRV 130 Query: 152 IPEIKPAR----KIKQVTKKHLDWIYFGD 176 P + +++ V + + + GD Sbjct: 131 HPGEEWLYVLDGRLRVVLGETVHDLDPGD 159 >gi|188581450|ref|YP_001924895.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179344948|gb|ACB80360.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 201 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 29/68 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E R K +G +++ +R+ + + ++ A ++ ENG S S+ + + Sbjct: 12 EERPLEKALGHQVRVLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIASAL 71 Query: 84 EISFDWIY 91 + ++ Sbjct: 72 NVPITALF 79 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G +++ +R+++ +S + G G+ +S E G P + I + + Sbjct: 19 ALGHQVRVLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIASALNVPITAL 78 Query: 173 Y-FGDEVIVPKSIKRAKGNQSSKKSKK 198 + +E +KR +G ++ K Sbjct: 79 FAAFEETRDCSHVKRGQGVPIERRGTK 105 >gi|154504923|ref|ZP_02041661.1| hypothetical protein RUMGNA_02433 [Ruminococcus gnavus ATCC 29149] gi|153794806|gb|EDN77226.1| hypothetical protein RUMGNA_02433 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RIK R TQ+ +A + + ++ E G S+ + + N +S D Sbjct: 5 YKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSVSVD 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + VI + K + ++ + Sbjct: 65 TLLCDNVITSKIVFEKEAKDILSDCDEYEVRFL 97 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D AIG R+K R KG++Q L+ + + +SN E G+T + I Sbjct: 1 MEVDYKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALS 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 +D + + + ++ Sbjct: 61 VSVDTLLCDNVITSKIVFEK 80 >gi|254475536|ref|ZP_05088922.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214029779|gb|EEB70614.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 131 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 1/104 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R+A TQ ++A ++ + +E + + +S W+ Sbjct: 16 FGDRVAAAREAAGMTQAQLARRLGVKKTTLTGWEQDLSEPRANKLTMMAGLLNVSMGWLL 75 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 GE D AI L+ +R++ + +L Sbjct: 76 TGEGEGMDAPAGEQV-PQDLAAILTELRQLREEMRGNVERAARL 118 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + + R+ GM+Q + + LG+ +TL+ +EQ + P + + + W+ G+ Sbjct: 20 VAAAREAAGMTQAQLARRLGVKKTTLTGWEQDLSEPRANKLTMMAGLLNVSMGWLLTGE 78 >gi|303243062|ref|ZP_07329512.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302589397|gb|EFL59195.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 114 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RI+ R N TQ+++A + S V E G S+ + L NE IS D Sbjct: 3 YKALGERIRKQRLKVNLTQEQLAEKIDMSYSFVGQIERGDRVLSLETLVRLANELSISVD 62 Query: 89 WIYDG 93 ++ Sbjct: 63 YLIQD 67 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 38/93 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A+G R++ R ++Q + + + M S + E+G + ++ ++ Sbjct: 1 MDYKALGERIRKQRLKVNLTQEQLAEKIDMSYSFVGQIERGDRVLSLETLVRLANELSIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +D++ P+ + K++K K Sbjct: 61 VDYLIQDSLKFTPEVFISSALTNLQGKNEKKLK 93 >gi|257438000|ref|ZP_05613755.1| putative toxin-antitoxin system, toxin component [Faecalibacterium prausnitzii A2-165] gi|257199660|gb|EEU97944.1| putative toxin-antitoxin system, toxin component [Faecalibacterium prausnitzii A2-165] Length = 96 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K+ G R+ D+R + TQ+E+A+ + V+ ENG S SI + L +S D Sbjct: 6 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTD 65 Query: 89 WIYDGEVIDRRYEDVT 104 ++ G + Sbjct: 66 YLLMGSEPSKEKVKND 81 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVT 165 D G RL +R +G++Q E LG+ +S E G I ++ + Sbjct: 1 MYFDAKEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCIL 60 Query: 166 KKHLDWIYFGDEVIVPKS 183 D++ G E K Sbjct: 61 HVSTDYLLMGSEPSKEKV 78 >gi|253988431|ref|YP_003039787.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988437|ref|YP_003039793.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638957|emb|CAR67572.1| putative phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779881|emb|CAQ83042.1| putative phage regulator [Photorhabdus asymbiotica] gi|253779887|emb|CAQ83048.1| putative phage regulator [Photorhabdus asymbiotica] Length = 133 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 29/68 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++ +R+A N +Q +A A N +E G + + + + + +++ D + Sbjct: 16 FAERLRLLREARNLSQVRLAELLGVDPRAYNRWEKGASAPHLETVIKIADVLQVTIDELV 75 Query: 92 DGEVIDRR 99 + I Sbjct: 76 GRKAISDE 83 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 LD A RL+ +R+ + +SQ+ +LLG+ + +E+G + P ++ KI V + Sbjct: 11 LDMSAFAERLRLLREARNLSQVRLAELLGVDPRAYNRWEKGASAPHLETVIKIADVLQVT 70 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + I+ Sbjct: 71 IDELVGRKAISDEVKIRN 88 >gi|83746380|ref|ZP_00943432.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551] gi|207744667|ref|YP_002261059.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609] gi|83726921|gb|EAP74047.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551] gi|206596074|emb|CAQ63001.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609] Length = 209 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 1/104 (0%) Query: 14 LQEYTLIITPEIRQ-YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 +QE T + + + + R++++R A T +A S ++L E G S + Sbjct: 1 MQETTAPPSDDTDAGVNERIARRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPT 60 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 L +S ++ GE + + + + + Sbjct: 61 AAVLDKLAAGLGVSLASLFGGEREGVSAQPLMRRAQQTQWRDPE 104 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+G P K+ L ++ G Sbjct: 22 RRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLAAGLGVSLASLFGG 81 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + V + Q+ + + Sbjct: 82 EREGVSAQPLMRRAQQTQWRDPES 105 >gi|295110215|emb|CBL24168.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 372 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 1/104 (0%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + R TQ E+A + AV+ +E G I L + ++IS D + Sbjct: 5 NIGRVLIKNRHKRGITQDELATHLGVSKGAVSKWETGSSLPDILLLPQLASYFDISIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQIEFG 133 + + + RL + + + +++ + Sbjct: 65 IGYQPQMEQEDIKKLYIRLSKDFSMLSFEEVLAECLKIAKKFYA 108 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG L R +G++Q E LG+ +S +E G ++P+I ++ Sbjct: 1 MKEINIGRVLIKNRHKRGITQDELATHLGVSKGAVSKWETGSSLPDILLLPQLASYFDIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK+ Sbjct: 61 IDELIGYQPQMEQEDIKK 78 >gi|225869491|ref|YP_002745438.1| DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|225698895|emb|CAW91878.1| putative DNA-binding protein [Streptococcus equi subsp. equi 4047] Length = 120 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 31/92 (33%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++K R +Q +A A++ +ENG + + + L E++ D Sbjct: 1 MTKFAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + G+ + T K + K Sbjct: 61 ELVTGKEPAIKVIKKTEKPMNVWEFLTEESKR 92 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK R +K +SQ + L + +S +E G P+++ + V + LD Sbjct: 1 MTKFAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLD 60 Query: 171 WIYFGDEVIVPKSIKRAK 188 + G E + K K Sbjct: 61 ELVTGKEPAIKVIKKTEK 78 >gi|118478614|ref|YP_895765.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118417839|gb|ABK86258.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 374 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 66 SYKPQMEQEDIKE 78 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKE 78 >gi|323702873|ref|ZP_08114531.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323532131|gb|EGB22012.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 132 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 1/101 (0%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ K +G RI++ R+ +++E A V E G S+ + + Sbjct: 1 MENKVEIDNKTIGQRIREEREKLGLSREEFAEIIGLSNYYVGQLERGERQMSLPVLVKIV 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 N +S D++ G+ + +V + + ++K I Sbjct: 61 NCLHVSLDYLIFGKDY-QNAGNVNESQIVYEACNYNKVKEI 100 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 48/102 (47%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + NK +D IG R++ R+ G+S+ EF +++G+ N + E+G + KI Sbjct: 1 MENKVEIDNKTIGQRIREEREKLGLSREEFAEIIGLSNYYVGQLERGERQMSLPVLVKIV 60 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 LD++ FG + ++ ++ + K K+ +N Sbjct: 61 NCLHVSLDYLIFGKDYQNAGNVNESQIVYEACNYNKVKEINN 102 >gi|319936820|ref|ZP_08011232.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808088|gb|EFW04660.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 220 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ RK N TQ+E+A + +ENG+ + S+ Y + L + + I+ D Sbjct: 2 LHDKMIYYRKKNMLTQEELAEKLCVSRQTITKWENGVITPSLEYLIDLSHIFGITIDHFI 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 + VTN +L Sbjct: 62 KDDDCRSDTPQVTNTNQL 79 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK ++Q E + L + T++ +E G P ++ + + +D D+ Sbjct: 9 YRKKNMLTQEELAEKLCVSRQTITKWENGVITPSLEYLIDLSHIFGITIDHFIKDDDCRS 68 Query: 181 PKSIKRAKGNQSSKKSKKDKKSS 203 + NQ + KKS+ Sbjct: 69 DTP-QVTNTNQLVSFLVEAKKST 90 >gi|260887041|ref|ZP_05898304.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|260863103|gb|EEX77603.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] Length = 214 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST-SIRYALYLRNEYEISFDW 89 G ++K +R+ ++ TQ ++A + A++ +EN + L +EI+ D Sbjct: 9 KFGEKLKALREKHHLTQTDVAKELGVTQRAISYYENNNVAPNDPEALNKLAKLFEITLDE 68 Query: 90 IYDGEVIDRRYEDVTNKKRLD 110 + + + + + K LD Sbjct: 69 LLNNDGQKSKLHKLIEKLLLD 89 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP-EIKPARKIKQV 164 K + P G +LK++R+ ++Q + K LG+ +S YE P + + K+ ++ Sbjct: 2 YKEVIPMKFGEKLKALREKHHLTQTDVAKELGVTQRAISYYENNNVAPNDPEALNKLAKL 61 Query: 165 TKKHLDWIYFGD 176 + LD + D Sbjct: 62 FEITLDELLNND 73 >gi|255306587|ref|ZP_05350758.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 404 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RK N TQ+++A AV+ +E+G I L + + +S D + Sbjct: 4 KIGKVIQCLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ E + K L+ + Sbjct: 64 LNYKIDLSEEEVMKIYKELESGFARIEI 91 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 34/74 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++ +RK++ ++Q + K +G+ +S +E G + P+I+ + +D Sbjct: 2 QIKIGKVIQCLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSID 61 Query: 171 WIYFGDEVIVPKSI 184 + + + + Sbjct: 62 KLLNYKIDLSEEEV 75 >gi|209551825|ref|YP_002283742.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537581|gb|ACI57516.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 189 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 29/85 (34%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Q + +G RI+ +R T ++A + + ++ E S + + Sbjct: 2 EEQLEQAIGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALG 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +S + E ++++ Sbjct: 62 LSLSAFFAEEGEQAAPLARRQEQQV 86 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R++ +R DKG++ + G+ + +S E+ P +I L Sbjct: 8 AIGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAF 67 Query: 173 YFGDEVIVPKSIKRAKGN 190 + + +R + Sbjct: 68 FAEEGEQAAPLARRQEQQ 85 >gi|168210976|ref|ZP_02636601.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710994|gb|EDT23176.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 354 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 W +K RK N TQ ++A N SA++ +E G SI + + L NE S D Sbjct: 3 WTVFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSID 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ G + + N + D + K Sbjct: 63 NLF-GFNREVTIDLPQNLTKEDLKPLEKEFKK 93 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D LK RKD ++Q + K L + S +S YE+G P I + Sbjct: 1 MDWTVFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCS 60 Query: 169 LDWIYFGDEVI---VPKSIKRAKGNQSSKKSKKDK 200 +D ++ + + +P+++ + K+ KK+ Sbjct: 61 IDNLFGFNREVTIDLPQNLTKEDLKPLEKEFKKEN 95 >gi|328880928|emb|CCA54167.1| putative transcriptional regulatory protein [Streptomyces venezuelae ATCC 10712] Length = 190 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 29/84 (34%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ Q + + +K RK T +A A + E + S+ + L + Sbjct: 2 SDLDQLTQSLARNLKRWRKERGLTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADA 61 Query: 83 YEISFDWIYDGEVIDRRYEDVTNK 106 +S + D E + ++ Sbjct: 62 LGVSITTLLDYEQGPQVRIVPPDQ 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK RK++G++ G+ + EQ RT P + K+ + + Sbjct: 13 RNLKRWRKERGLTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 72 Query: 176 DE 177 ++ Sbjct: 73 EQ 74 >gi|291521205|emb|CBK79498.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 111 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 36/107 (33%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + + ++G RIK R + Q E+A + + ++ E G+ + + + + Sbjct: 2 KNENERFVEMGKRIKARRVSLGMKQMELAERIDISNNHISSIERGIERPGLESFIRICDV 61 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 +++ D++ G + R + Q Sbjct: 62 LDVTPDYLLLGSMKANDIPKNITDNLKLCTDEEVRFVEAMTQYMIEQ 108 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G R+K+ R GM Q+E + + + N+ +S+ E+G P ++ +I V Sbjct: 2 KNENERFVEMGKRIKARRVSLGMKQMELAERIDISNNHISSIERGIERPGLESFIRICDV 61 Query: 165 TKKHLDWIYFG 175 D++ G Sbjct: 62 LDVTPDYLLLG 72 >gi|326772673|ref|ZP_08231957.1| transcriptional regulator, XRE family [Actinomyces viscosus C505] gi|326637305|gb|EGE38207.1| transcriptional regulator, XRE family [Actinomyces viscosus C505] Length = 65 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K V ++ +R+A TQ ++ + ++N E G S+ A+ + +E + + Sbjct: 1 MKTVDNDVRSLREACGLTQAQLGVALGVSRQSINSIEKGKYDPSLPLAIAIARYFETTVE 60 Query: 89 WIYD 92 I+ Sbjct: 61 EIFH 64 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 33/58 (56%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++S+R+ G++Q + G LG+ ++++ E+G+ P + A I + + ++ I+ Sbjct: 6 NDVRSLREACGLTQAQLGVALGVSRQSINSIEKGKYDPSLPLAIAIARYFETTVEEIF 63 >gi|228926912|ref|ZP_04089978.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936979|ref|ZP_04099721.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822694|gb|EEM68584.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832647|gb|EEM78218.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 118 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI ++RK Q+E+ + ++ +E G S L + + + D++ Sbjct: 4 IGERIFELRKEKKLVQEELGKYIGVSKQTISKYEKGTKIPSRENIEKLADFFSVPVDYLL 63 Query: 92 DGEVIDRRYEDVTNKKR 108 + + + Sbjct: 64 GKSDSTNKSSNNIKEIF 80 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+ +RK+K + Q E GK +G+ T+S YE+G IP + K+ +D Sbjct: 1 MNIIGERIFELRKEKKLVQEELGKYIGVSKQTISKYEKGTKIPSRENIEKLADFFSVPVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ G KS K S + D + +P Sbjct: 61 YLL-GKSDSTNKSSNNIKEIFESDELHWDGRKLSP 94 >gi|261345516|ref|ZP_05973160.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282566568|gb|EFB72103.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 106 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK + +A N + ++ +ENG+ + + + + + DW + Sbjct: 7 IGIKIKARRKELGLSGAGLAKILNISQQQISRYENGINKIPLNHLVSIAVALKCPIDWFF 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 G + D Y + + Sbjct: 67 QGCISDEDYSIQDSNMGI 84 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y IG ++K+ RK+ G+S K+L + +S YE G + I K +D Sbjct: 4 HYFIGIKIKARRKELGLSGAGLAKILNISQQQISRYENGINKIPLNHLVSIAVALKCPID 63 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 W + G SI+ + +++ K Sbjct: 64 WFFQGCISDEDYSIQDSNMGIKNQELK 90 >gi|89071275|ref|ZP_01158446.1| transcriptional regulator, XRE family protein [Oceanicola granulosus HTCC2516] gi|89043205|gb|EAR49438.1| transcriptional regulator, XRE family protein [Oceanicola granulosus HTCC2516] Length = 134 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 5/107 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R+A +QK++A + +E+ + L +S W+ Sbjct: 20 FGDRLAAAREAAGLSQKDLARRLGVKHQTLKHWEDDIAEPRANKLQMLSGLLSVSLRWLL 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 G D A+ A ++++R + LG+ Sbjct: 80 TGHGEGVEPPGAAEIAP-DVSAVLAEMRALRAQA----DRMAERLGV 121 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G RL + R+ G+SQ + + LG+ + TL ++E P + + + L Sbjct: 16 DAATFGDRLAAAREAAGLSQKDLARRLGVKHQTLKHWEDDIAEPRANKLQMLSGLLSVSL 75 Query: 170 DWIYFG 175 W+ G Sbjct: 76 RWLLTG 81 >gi|227545304|ref|ZP_03975353.1| XRE family transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|227184700|gb|EEI64771.1| XRE family transcriptional regulator [Lactobacillus reuteri CF48-3A] Length = 201 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R KG +Q + + L + T+S++E R+ P+I +I + LD + D Sbjct: 1 MKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDDLLREDH 60 Query: 178 VIVPKSIKRAKGNQSSKK 195 ++ + N+ K Sbjct: 61 EMINNYKEEHTMNKRVDK 78 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 25/73 (34%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R TQ+++A ++ +EN I + + + Y +S D + + Sbjct: 1 MKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDDLLREDH 60 Query: 96 IDRRYEDVTNKKR 108 + Sbjct: 61 EMINNYKEEHTMN 73 >gi|302541927|ref|ZP_07294269.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302459545|gb|EFL22638.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 509 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 19/180 (10%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 TDDYLSRIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 I + V +RL K+ LL +TL Sbjct: 62 ---SEIVSLGYAGPMHLRVVGGRRLSGAIDVKTSKNACVAL-----LCATLLNAGRTTLR 113 Query: 145 NYEQGRTIPEIKPARKIKQVT---KKHLDWIYFGD--EVIVPKSIKRAKGNQSSKKSKKD 199 + I+ +I +V W+ G+ E++ P + + + + + Sbjct: 114 RVAR------IEEVYRILEVLGSIGVRTRWLNDGNDLEIVPPAELDLGSMDTEAARRTRS 167 >gi|324327242|gb|ADY22502.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 374 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A+ +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + Sbjct: 65 ISYTPQMEQEDIKD 78 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYTPQMEQEDIKD 78 >gi|291449844|ref|ZP_06589234.1| regulatory protein [Streptomyces albus J1074] gi|291352793|gb|EFE79695.1| regulatory protein [Streptomyces albus J1074] Length = 202 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +RK T ++ S ++ E+G S+ L + +++ D + Sbjct: 18 VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGNRRPSLELLLPIAAAHDVPLDRLV 77 Query: 92 DGEVIDRRYEDVTNKKR 108 + ++ Sbjct: 78 GAPPAGDPRVRLEPIEQ 94 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+++RK++G + G+ STLS E G P ++ I LD + Sbjct: 22 LRALRKERGATLAGLSAATGISVSTLSRLESGNRRPSLELLLPIAAAHDVPLDRLVGAPP 81 Query: 175 -GDEVIVPKSIKRAK 188 GD + + I++ Sbjct: 82 AGDPRVRLEPIEQGN 96 >gi|239977932|ref|ZP_04700456.1| putative transcriptional regulator [Streptomyces albus J1074] Length = 211 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +RK T ++ S ++ E+G S+ L + +++ D + Sbjct: 27 VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGNRRPSLELLLPIAAAHDVPLDRLV 86 Query: 92 DGEVIDRRYEDVTNKKR 108 + ++ Sbjct: 87 GAPPAGDPRVRLEPIEQ 103 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 L+++RK++G + G+ STLS E G P ++ I LD + Sbjct: 31 LRALRKERGATLAGLSAATGISVSTLSRLESGNRRPSLELLLPIAAAHDVPLDRLVGAPP 90 Query: 175 -GDEVIVPKSIKRAK 188 GD + + I++ Sbjct: 91 AGDPRVRLEPIEQGN 105 >gi|300118308|ref|ZP_07056055.1| transcriptional regulator [Bacillus cereus SJ1] gi|298724277|gb|EFI64972.1| transcriptional regulator [Bacillus cereus SJ1] Length = 373 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIYKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVID 97 Sbjct: 65 ICYTPQM 71 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIYKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELICYTPQMGQEDIKN 78 >gi|255975390|ref|ZP_05425976.1| prophage Lp1 protein 8 [Enterococcus faecalis T2] gi|255968262|gb|EET98884.1| prophage Lp1 protein 8 [Enterococcus faecalis T2] Length = 125 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK++R TQ+E+A A +E+G L + ++ D++ G Sbjct: 5 KIKELRNEKKLTQQEVADYLGITRPAYTAYESGKRQPDFETLQKLATLFNVTTDFLL-GR 63 Query: 95 VIDRRYEDVTNKKRLDPY 112 + + LD Sbjct: 64 NYTPEWANKEEVMELDKI 81 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++K +R +K ++Q E LG+ + YE G+ P+ + +K+ + D++ Sbjct: 1 MFHVKIKELRNEKKLTQQEVADYLGITRPAYTAYESGKRQPDFETLQKLATLFNVTTDFL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|111025461|ref|YP_707881.1| repressor protein [Rhodococcus jostii RHA1] gi|110824440|gb|ABG99723.1| possible repressor protein [Rhodococcus jostii RHA1] Length = 148 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 18/133 (13%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 R+ +Q ++A ++ + + +E G S + + E+ + V +R Sbjct: 18 RRNAGWSQADLARLSDVGVATIRRWEKGTASPQVDVLARVAAVLEVPISDFVNIPVSERF 77 Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 D R G++Q + G G+ + + + E+G T A Sbjct: 78 PGD------------------WRVLLGLTQPQLGARAGVRTAVVGSIERGETALSDNVAE 119 Query: 160 KIKQVTKKHLDWI 172 ++ + + Sbjct: 120 RLSSALDISIAEL 132 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 25/53 (47%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ G SQ + +L + +T+ +E+G P++ ++ V + + Sbjct: 17 ARRNAGWSQADLARLSDVGVATIRRWEKGTASPQVDVLARVAAVLEVPISDFV 69 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 D R TQ ++ A + V E G + S A L + +IS + D Sbjct: 80 DWRVLLGLTQPQLGARAGVRTAVVGSIERGETALSDNVAERLSSALDISIAELRDAHQRA 139 Query: 98 RRYED 102 R Sbjct: 140 RSRPP 144 >gi|327474019|gb|EGF19432.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 94 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K IR+ +Q ++A ++ +EN + L + Y+IS D + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +LK IR+ KG SQ + + LG T+SN+E +TI + ++ + LD + Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|309701005|emb|CBJ00303.1| putative prophage repressor [Escherichia coli ETEC H10407] Length = 211 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 29/87 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L + S D++ Sbjct: 1 MGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + Y + + + Sbjct: 61 KGEDSLSNIAYHSRHDPRGSYPLISWV 87 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 36/66 (54%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R+++ RK+ + Q GK++G+ N +S +E+ T P + + + + D++ Sbjct: 1 MGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLL 60 Query: 174 FGDEVI 179 G++ + Sbjct: 61 KGEDSL 66 >gi|157159743|ref|YP_001457061.1| P22 repressor protein c2 [Escherichia coli HS] gi|253774261|ref|YP_003037092.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260856262|ref|YP_003230153.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|291283947|ref|YP_003500765.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615] gi|157065423|gb|ABV04678.1| P22 repressor protein c2 [Escherichia coli HS] gi|194021560|gb|ACF32369.1| repressor protein C2 [Enterobacteria phage DE3] gi|253325305|gb|ACT29907.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976933|gb|ACT42603.1| Repressor protein C2 [Escherichia coli BL21(DE3)] gi|257754911|dbj|BAI26413.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|290763820|gb|ADD57781.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615] gi|313848585|emb|CBY77813.1| P22 repressor protein c2 [Escherichia coli BL21(DE3)] gi|324114861|gb|EGC08828.1| peptidase S24 [Escherichia fergusonii B253] Length = 216 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 29/87 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L + S D++ Sbjct: 6 MGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + Y + + + Sbjct: 66 KGEDSLSNIAYHSRHDPRGSYPLISWV 92 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 38/71 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+++ RK+ + Q GK++G+ N +S +E+ T P + + + + Sbjct: 1 MNTQLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCS 60 Query: 169 LDWIYFGDEVI 179 D++ G++ + Sbjct: 61 PDYLLKGEDSL 71 >gi|71904207|ref|YP_281010.1| transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71803302|gb|AAX72655.1| transcriptional regulator [Streptococcus pyogenes MGAS6180] Length = 128 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + ++G +I RK +Q+++A +++ +EN I L L +++S Sbjct: 2 IFMEIGQQIIRYRKQQALSQEKLAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSL 61 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D + G++ +Y K+ Sbjct: 62 DQLIKGDIEKMKYTITQVDKK 82 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 42/89 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG ++ RK + +SQ + + + + ++SN+E +T P+I + Q+ + Sbjct: 1 MIFMEIGQQIIRYRKQQALSQEKLAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 LD + GD + +I + + +K Sbjct: 61 LDQLIKGDIEKMKYTITQVDKKNFKRDTK 89 >gi|89896477|ref|YP_519964.1| hypothetical protein DSY3731 [Desulfitobacterium hafniense Y51] gi|89335925|dbj|BAE85520.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 373 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 R+ TQ E+A +++V+ +E G I + L + IS D + R Sbjct: 19 RREKGITQDELAAYIGVSKASVSKWETGQSYPDITFLPLLAAYFNISIDELMSYSPQMER 78 Query: 100 YE 101 + Sbjct: 79 SD 80 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + + L + R++KG++Q E +G+ +++S +E G++ P+I + Sbjct: 6 MKEINLASVLVAKRREKGITQDELAAYIGVSKASVSKWETGQSYPDITFLPLLAAYFNIS 65 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + I + Sbjct: 66 IDELMSYSPQMERSDIAK 83 >gi|118593092|ref|ZP_01550479.1| Transcriptional repressor [Stappia aggregata IAM 12614] gi|118434399|gb|EAV41053.1| Transcriptional repressor [Stappia aggregata IAM 12614] Length = 313 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK++R+ N +Q E+A ++ + V+ +E+G I + + S D I E Sbjct: 2 KIKELREKMNWSQGELAKLLSRTQQTVSRWESGATEPGIEALRDMAMIFGCSVDDILGLE 61 Query: 95 VIDRRYEDVTNKKRLDPYA 113 I + + D A Sbjct: 62 GISPSNKLTVSISHADALA 80 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K +R+ SQ E KLL T+S +E G T P I+ R + + +D I Sbjct: 1 MKIKELREKMNWSQGELAKLLSRTQQTVSRWESGATEPGIEALRDMAMIFGCSVDDILGL 60 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + + + + + + + D Sbjct: 61 EGISPSNKLTVSISHADALAEEFD 84 >gi|160944105|ref|ZP_02091335.1| hypothetical protein FAEPRAM212_01607 [Faecalibacterium prausnitzii M21/2] gi|158444781|gb|EDP21785.1| hypothetical protein FAEPRAM212_01607 [Faecalibacterium prausnitzii M21/2] Length = 163 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 36/99 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++R A Q+E SAV+ E+G + A+ + E+ ++ DW+ +G Sbjct: 5 DRIKELRLALGLNQQEFGARIGIKVSAVSYLESGKSRLTESNAILICREFNVNRDWLLNG 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + L L+ + + Sbjct: 65 AGEMFQPNSQDAVDALAEQYDLTPLERDMVENYCRLSKA 103 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +R G++Q EFG +G+ S +S E G++ A I + + DW+ Sbjct: 4 NDRIKELRLALGLNQQEFGARIGIKVSAVSYLESGKSRLTESNAILICREFNVNRDWLLN 63 Query: 175 GDEVIVPKSIKRA 187 G + + + A Sbjct: 64 GAGEMFQPNSQDA 76 >gi|304436877|ref|ZP_07396841.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370076|gb|EFM23737.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 86 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ IRK TQKE A A E +E G + + L + +++S D++ Sbjct: 8 LRAIRKERKHTQKEAAAAAGVTERNYQDWEYGKTKPTFDTLIALADYFDVSLDYLVGRSD 67 Query: 96 IDRRYEDVTNKKR 108 + Sbjct: 68 NPTISRQSNERIE 80 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 L++IRK++ +Q E G+ ++E G+T P + LD Sbjct: 1 MVIFKDHLRAIRKERKHTQKEAAAAAGVTERNYQDWEYGKTKPTFDTLIALADYFDVSLD 60 Query: 171 WIY--FGDEVIVPKSIKRAKGNQS 192 ++ + I +S +R + N+S Sbjct: 61 YLVGRSDNPTISRQSNERIERNES 84 >gi|229814963|ref|ZP_04445301.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM 13280] gi|229809450|gb|EEP45214.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM 13280] Length = 217 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT I+ R+ +Q+++A ++ +E G I+ YL + ++ D + Sbjct: 6 IGTGIRIQRERLGMSQQDLAQACMVSRQTISNWETGKTLPDIQSMAYLAEVFGVTVDDLV 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + +K+ L Sbjct: 66 NQVAPELGKRVSVDKREL 83 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG ++ R+ GMSQ + + + T+SN+E G+T+P+I+ + +V Sbjct: 1 MEGTGIGTGIRIQRERLGMSQQDLAQACMVSRQTISNWETGKTLPDIQSMAYLAEVFGVT 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDDLV 65 >gi|307153159|ref|YP_003888543.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7822] gi|306983387|gb|ADN15268.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7822] Length = 377 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++ IK IR +Q+++A A A++ E+G + S AL L + Sbjct: 5 KELRNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVED 64 Query: 90 IYDGEVIDRRYEDVTNKK 107 ++ E D E + Sbjct: 65 LFWLEDDDAVIEAQPTES 82 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 30/64 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +K IR G+SQ + ++ G+ +S E G+ P A ++ + ++ +++ Sbjct: 8 RNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVEDLFW 67 Query: 175 GDEV 178 ++ Sbjct: 68 LEDD 71 >gi|170690931|ref|ZP_02882097.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170144180|gb|EDT12342.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 207 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 TP VG +I+ +R T +++ A +S ++ E + +I A L N Sbjct: 20 TPSAIAAPPRVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTN 79 Query: 82 EYEISFDWIYDGEVIDR 98 +S D ++ + Sbjct: 80 ALGVSLDSLFAPQKTPE 96 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ M+ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 32 EQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 89 >gi|325689902|gb|EGD31906.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] gi|325696861|gb|EGD38749.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] gi|327459814|gb|EGF06154.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 94 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K IR+ +Q ++A ++ +EN + L + Y+IS D + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSVSLIRLADFYQISLDEL 60 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +LK IR+ KG SQ + + LG T+SN+E +TI + ++ + LD + Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSVSLIRLADFYQISLDEL 60 >gi|319945801|ref|ZP_08020052.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|322387055|ref|ZP_08060666.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|319748161|gb|EFW00404.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|321142042|gb|EFX37536.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 148 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 33/83 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +RK+ TQ +++ + + +ENG + + + L N + + D++ Sbjct: 10 ERLKTLRKSKKLTQVQISELIGVQQGTYSRWENGTLEPGLEFVVKLANIFGTTTDYLLGQ 69 Query: 94 EVIDRRYEDVTNKKRLDPYAIGA 116 + + L A + Sbjct: 70 KPYSIISSLPLEQLDLTNIANFS 92 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y RLK++RK K ++Q++ +L+G+ T S +E G P ++ K+ + D+ Sbjct: 6 YKFSERLKTLRKSKKLTQVQISELIGVQQGTYSRWENGTLEPGLEFVVKLANIFGTTTDY 65 Query: 172 IY 173 + Sbjct: 66 LL 67 >gi|317120864|ref|YP_004100867.1| hypothetical protein Tmar_0015 [Thermaerobacter marianensis DSM 12885] gi|315590844|gb|ADU50140.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 73 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +RKA TQ ++A + + +E G+ + I A+ L + + + ++ Sbjct: 8 QLRKARGWTQYDVARMLGISRARYSQYELGLRNPPIDVAIRLADLFGVPIQELFP 62 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +RK +G +Q + ++LG+ + S YE G P I A ++ + + ++ Sbjct: 8 QLRKARGWTQYDVARMLGISRARYSQYELGLRNPPIDVAIRLADLFGVPIQELF 61 >gi|256848879|ref|ZP_05554313.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256714418|gb|EEU29405.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 115 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 29/79 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + IK +RK N Q E+ + + + +E G L + +++S D Sbjct: 6 RKKLANNIKTLRKQKNLNQAELGEILHVSQQTIGSWETGRAIPGSDTLKILADYFQVSTD 65 Query: 89 WIYDGEVIDRRYEDVTNKK 107 + + + ++ Sbjct: 66 ELLGRKTSGSANDTDLSEM 84 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K D + +K++RK K ++Q E G++L + T+ ++E GR IP + + Sbjct: 1 MKDYDRKKLANNIKTLRKQKNLNQAELGEILHVSQQTIGSWETGRAIPGSDTLKILADYF 60 Query: 166 KKHLDWIY 173 + D + Sbjct: 61 QVSTDELL 68 >gi|237794603|ref|YP_002862155.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|229262963|gb|ACQ53996.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657] Length = 136 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK+ N TQ+E+ S V ++E S + + + +S D++ Sbjct: 2 LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFLL 61 Query: 92 DGEVI 96 + E Sbjct: 62 NTEEK 66 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK K ++Q E GK +G+ S + YE P + KI + D++ +E Sbjct: 6 IKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFLLNTEE 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 + K K++ ++ Sbjct: 66 KLDMTLDSVKKVYNMVKEATEEY 88 >gi|242243266|ref|ZP_04797711.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis W23144] gi|242233215|gb|EES35527.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis W23144] Length = 189 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V +IK R+ + +Q+ +A ++ +EN I L + +++S D + Sbjct: 2 NVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + + +++ K LD + + Sbjct: 62 VEDDLKNVQIKNIK--KELDFWTWMMII 87 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + + + T+SN+E ++ P+I + Q+ K LD Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 172 IYFGD 176 + D Sbjct: 61 LVEDD 65 >gi|27469327|ref|NP_765964.1| hypothetical protein SE2409 [Staphylococcus epidermidis ATCC 12228] gi|282874710|ref|ZP_06283589.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|27316877|gb|AAO06052.1|AE016752_85 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|281296426|gb|EFA88941.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|329724169|gb|EGG60687.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] Length = 189 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V +IK R+ + +Q+ +A ++ +EN I L + +++S D + Sbjct: 2 NVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + + +++ K LD + + Sbjct: 62 VEDDLKNVQIKNIK--KELDFWTWMMII 87 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + + + T+SN+E ++ P+I + Q+ K LD Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 172 IYFGD 176 + D Sbjct: 61 LVEDD 65 >gi|329667149|gb|AEB93097.1| transcriptional regulator, XRE family [Lactobacillus johnsonii DPC 6026] Length = 114 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I ++RK+ +Q ++A S + ++E S + L + + ++ + D + Sbjct: 4 LGENISNLRKSRGLSQAQLADRLGIATSTLGMYETNKREPSNQTLLLIADFFDKTVDELL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 G N + L G + + + ++ + +P Sbjct: 64 -GRQTSTHTSTELNYEDLGLPYKGVISEDLNDTFRLLAQQYAEKHNLPKK 112 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++G + ++RK +G+SQ + LG+ STL YE + P + I K +D Sbjct: 1 MASLGENISNLRKSRGLSQAQLADRLGIATSTLGMYETNKREPSNQTLLLIADFFDKTVD 60 Query: 171 WIY 173 + Sbjct: 61 ELL 63 >gi|329920508|ref|ZP_08277240.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] gi|328936184|gb|EGG32637.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] Length = 87 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++ R TQ+E+A +AV +E G + + + ++ D++ Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLL 62 Query: 92 DGEV 95 D + Sbjct: 63 DKDN 66 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 37/71 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++++ R + G++Q E +++ + + ++ +E GR +P++ + I +D++ Sbjct: 5 EKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLLDK 64 Query: 176 DEVIVPKSIKR 186 D I IK+ Sbjct: 65 DNAIDLSIIKK 75 >gi|319936780|ref|ZP_08011192.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] gi|319808048|gb|EFW04620.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] Length = 191 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG I +RK TQKE+A + ++ +E G+ + L ++I+ + Sbjct: 4 QKVGDLIYRLRKEKQLTQKELANQIGISDKTISKWERGLGCPDVSLLKDLSEIFQINIEK 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 I DG++ N KR++ Y Sbjct: 64 ILDGKLTS-NIRKGGNMKRIEFYVCPLC 90 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 38/68 (55%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G + +RK+K ++Q E +G+ + T+S +E+G P++ + + ++ + + Sbjct: 1 MDCQKVGDLIYRLRKEKQLTQKELANQIGISDKTISKWERGLGCPDVSLLKDLSEIFQIN 60 Query: 169 LDWIYFGD 176 ++ I G Sbjct: 61 IEKILDGK 68 >gi|331657741|ref|ZP_08358703.1| repressor protein C2 [Escherichia coli TA206] gi|315299798|gb|EFU59038.1| peptidase S24-like domain protein [Escherichia coli MS 16-3] gi|331055989|gb|EGI27998.1| repressor protein C2 [Escherichia coli TA206] Length = 216 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 29/87 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L + S D++ Sbjct: 6 MGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + Y + + + Sbjct: 66 KGEDSLSNIAYHSRHDPRGSYPLISWV 92 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 38/71 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+++ RK+ + Q GK++G+ N +S +E+ T P + + + + Sbjct: 1 MNTQLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCS 60 Query: 169 LDWIYFGDEVI 179 D++ G++ + Sbjct: 61 PDYLLKGEDSL 71 >gi|262204600|ref|YP_003275808.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262087947|gb|ACY23915.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 233 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 41/104 (39%) Query: 4 NPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 P + + +E T+ E + + ++ +R + +MA ++ ++ Sbjct: 22 EPLIRNQSGTARERTVDQPVEELELEAAIARNVRRLRLQEGLSVGDMAARVGISKAMLSK 81 Query: 64 FENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 EN S S+ L +++S ++ G I+R V N + Sbjct: 82 IENAQTSCSLSTLARLATAFDVSPTSLFRGADIERSAVFVKNGE 125 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI ++ +R +G+S + +G+ + LS E +T + ++ + Sbjct: 49 AIARNVRRLRLQEGLSVGDMAARVGISKAMLSKIENAQTSCSLSTLARLATAFDVSPTSL 108 Query: 173 YFGDEVIVPKS-IKRAKGNQSSKKSKKDKKS 202 + G ++ +K +G+Q ++ ++ Sbjct: 109 FRGADIERSAVFVKNGEGSQIIREGSREGHE 139 >gi|152967479|ref|YP_001363263.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216] gi|151361996|gb|ABS04999.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216] Length = 513 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 9/183 (4%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 +L+ L + L P+ VG RI+ R T ++ +S ++ ENG Sbjct: 10 AALEPLTDPALAPEPDTGLDALTVGRRIRYHRGVRGWTLAQLGEAVGTAQSQLSQVENGK 69 Query: 69 CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT---NKKRLDPYAIGARLKSIRKDK 125 + + E++ + D R + ++ + P A L +R + Sbjct: 70 REPRLSLVAAVARALEVTPADLLDPAPPPSRRAALEIELDRAQRSPLARALGLTEVRAGR 129 Query: 126 GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 + L+ + ++ PE + + + G + +P+ + Sbjct: 130 ALPTDALEALVRLHRELARRHDAANATPEE------ARRANTEIRLLMRGSDNHLPEIEE 183 Query: 186 RAK 188 A+ Sbjct: 184 LAE 186 >gi|124008127|ref|ZP_01692825.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC 23134] gi|123986375|gb|EAY26188.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC 23134] Length = 269 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNK-TQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +K +R+ N K TQ+ +A SA++ +E+G + + + I+ D + Sbjct: 3 LSKNLKHLRERNGKQTQENLANALGITRSAISSYEDGRAEPKLVVMNRIAQYFNITLDQL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E+ D+ +K + YA L+ + Sbjct: 63 LNVELATLGDVDLQQQKEVKKYASAENLRIL 93 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 112 YAIGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + LK +R+ G +Q LG+ S +S+YE GR P++ +I Q LD Sbjct: 1 MFLSKNLKHLRERNGKQTQENLANALGITRSAISSYEDGRAEPKLVVMNRIAQYFNITLD 60 Query: 171 WIYFGD 176 + + Sbjct: 61 QLLNVE 66 >gi|257865722|ref|ZP_05645375.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257872057|ref|ZP_05651710.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257799656|gb|EEV28708.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257806221|gb|EEV35043.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 396 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I RK TQ+E+A+ N +++V+ +E G I L ++ S D + Sbjct: 5 IGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQSYPDITSLPLLAAYFDCSVDELL 64 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + RK +G++Q E + + +++S +E G++ P+I + +D + Sbjct: 7 EEIARRRKQRGITQQELAVFMNVSKASVSKWETGQSYPDITSLPLLAAYFDCSVDELLIL 66 Query: 176 DEVIVPKSIKR 186 D + PK I+R Sbjct: 67 DSQLSPKEIQR 77 >gi|254388135|ref|ZP_05003371.1| hypothetical protein SSCG_00698 [Streptomyces clavuligerus ATCC 27064] gi|294817387|ref|ZP_06776029.1| Putative Xre family DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197701858|gb|EDY47670.1| hypothetical protein SSCG_00698 [Streptomyces clavuligerus ATCC 27064] gi|294322202|gb|EFG04337.1| Putative Xre family DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 349 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 27/181 (14%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++D R +Q ++A + +AV +ENG+ + + D ++ Sbjct: 26 GNKLRDYRVIRRMSQSDLAAALDIRTNAVYRWENGLATPPQERLPGIAAMLGADLDELFP 85 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRT 151 L +R D GM Q + + M + EQGR Sbjct: 86 RPAPPN-------------------LADLRCDAGMRQSDTTRYTNSMSPMPIRAAEQGRR 126 Query: 152 IPEIKPARKIKQVTKKHLDWI-------YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + + D+ VP+ + + ++ + Sbjct: 127 ALSDEAVTALARAYNVTRAELLAAQRRSFGFDQPAVPEQTAPTAPTALVAQGARARRGDH 186 Query: 205 P 205 P Sbjct: 187 P 187 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 28/84 (33%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + D G +L+ R + MSQ + L + + + +E G Sbjct: 1 MICSRGSRPSSAHSRSNPMPDRIFDGNKLRDYRVIRRMSQSDLAAALDIRTNAVYRWENG 60 Query: 150 RTIPEIKPARKIKQVTKKHLDWIY 173 P + I + LD ++ Sbjct: 61 LATPPQERLPGIAAMLGADLDELF 84 >gi|315231266|ref|YP_004071702.1| HTH-type transcriptional regulator protein [Thermococcus barophilus MP] gi|315184294|gb|ADT84479.1| HTH-type transcriptional regulator protein [Thermococcus barophilus MP] Length = 65 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R+A TQ+E+A + E G S+R A + + + + I+ Sbjct: 3 NRLRELREARGLTQEELAKILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVKIEDIFIY 62 Query: 94 EVI 96 E Sbjct: 63 EGD 65 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 36/63 (57%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+ +G++Q E K+LG+ T+ E+G+ P ++ A KI + ++ I+ Sbjct: 1 MKNRLRELREARGLTQEELAKILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVKIEDIF 60 Query: 174 FGD 176 + Sbjct: 61 IYE 63 >gi|169351280|ref|ZP_02868218.1| hypothetical protein CLOSPI_02059 [Clostridium spiroforme DSM 1552] gi|169292342|gb|EDS74475.1| hypothetical protein CLOSPI_02059 [Clostridium spiroforme DSM 1552] Length = 160 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + + +RKANN T +E+A N AV +ENG + + L + Y++S D + Sbjct: 10 NLHSNLIFLRKANNMTLEEVANEINVSRQAVAKWENGDSVPDLINCVALADLYDVSVDDL 69 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + K L Sbjct: 70 LHYDGEKEEASIAPKGKHL 88 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 + L +RK M+ E + + ++ +E G ++P++ + + +D + Sbjct: 12 HSNLIFLRKANNMTLEEVANEINVSRQAVAKWENGDSVPDLINCVALADLYDVSVDDLLH 71 Query: 175 GDEVIVPKSI 184 D SI Sbjct: 72 YDGEKEEASI 81 >gi|196037154|ref|ZP_03104469.1| transcriptional regulator [Bacillus cereus W] gi|195990258|gb|EDX54311.1| transcriptional regulator [Bacillus cereus W] Length = 116 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK++RK N TQ+++ + A++ FE G S + + + ++ D++ Sbjct: 2 IGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFNVTTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E+ + I A ++S+ Sbjct: 62 GRSEDPELSEEENKIVTEEGKNIMALIESL 91 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++K +RK+ ++Q + G +G+ +S +E+G+ P + KI D++ Sbjct: 1 MIGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFNVTTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSK 194 E + + K Sbjct: 61 LGRSEDPELSEEENKIVTEEGK 82 >gi|260430250|ref|ZP_05784224.1| DNA-binding protein [Citreicella sp. SE45] gi|260418722|gb|EEX11978.1| DNA-binding protein [Citreicella sp. SE45] Length = 213 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 P + S Q + P + +G +++++RK T ++A ++ Sbjct: 2 PIKKRSAALSQNPHAVGEPREKNLEVAIGRQVRELRKRQRMTGGDLAGKTGLSVGMLSKI 61 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 ENG+ S S+ L N + ++ G R Sbjct: 62 ENGVISPSLNTMSALANALGVPLVQLFSGFEEPRGAM 98 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG +++ +RK + M+ + G+ LS E G P + + L + Sbjct: 28 AIGRQVRELRKRQRMTGGDLAGKTGLSVGMLSKIENGVISPSLNTMSALANALGVPLVQL 87 Query: 173 YFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + G +E +K +G + + + N Sbjct: 88 FSGFEEPRGAMHVKAGQGAEIERAGTRAGHQYN 120 >gi|166032548|ref|ZP_02235377.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC 27755] gi|166026905|gb|EDR45662.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC 27755] Length = 150 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK R+ N TQ+++A V +ENG + A L E ++S D + Sbjct: 5 DNIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALELDVSMDELISD 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 E ++ + K + RL+ RK Sbjct: 65 EDVNDMQVNYVIGKS-ERIQNRMRLQEFRKKL 95 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +K R++K ++Q + L + T+ +E G P++ A+K+ +D Sbjct: 1 MALNDNIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALELDVSMDE 60 Query: 172 IYFGDEV 178 + ++V Sbjct: 61 LISDEDV 67 >gi|160894096|ref|ZP_02074874.1| hypothetical protein CLOL250_01650 [Clostridium sp. L2-50] gi|156864129|gb|EDO57560.1| hypothetical protein CLOL250_01650 [Clostridium sp. L2-50] Length = 222 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK++R QK + +S ++ +ENG+ + S L + ++ +S DW++ Sbjct: 24 ISEKIKELRTDLKMNQKNFSAAIGIRQSTLSSYENGVVTPSNDVLLTIAQKFHVSLDWLF 83 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + D + +I ++K +R D M+Q F +G+ STLS+YE G Sbjct: 1 MIFIICDILIIAFKEVDNMQESSISEKIKELRTDLKMNQKNFSAAIGIRQSTLSSYENGV 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 P I Q LDW++ Sbjct: 61 VTPSNDVLLTIAQKFHVSLDWLF 83 >gi|15615472|ref|NP_243775.1| hypothetical protein BH2909 [Bacillus halodurans C-125] gi|10175531|dbj|BAB06628.1| BH2909 [Bacillus halodurans C-125] Length = 189 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G R+K IR T ++A + + E G + ++ + +SF Sbjct: 8 KRIGQRLKRIRSDRGMTLDQLAKKTGVSKPMLGQIERGESNPTVSTLWKIATGLHVSFTA 67 Query: 90 IYDGEVID 97 + E + Sbjct: 68 FIEDEKPN 75 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K + IG RLK IR D+GM+ + K G+ L E+G + P + KI Sbjct: 2 NKEMLSKRIGQRLKRIRSDRGMTLDQLAKKTGVSKPMLGQIERGESNPTVSTLWKIATGL 61 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 DE IKR + Sbjct: 62 HVSFTAFI-EDEKPNVTVIKRDQ 83 >gi|237802182|ref|ZP_04590643.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025039|gb|EGI05095.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 160 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 39/108 (36%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K G R++++R A+ +Q+ A A+ S ++ E G + S+ L + Sbjct: 5 LRKRFGLRVRELRIASGMSQEAFADHASIARSYMSRIERGGANPSLDAIQVLAEALGVDA 64 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 +++ Y+ V D L S R + +L Sbjct: 65 GALFEIVEPATSYDAVEVPYAEDGTCFNPGLASPRDGSFRVGEKSAEL 112 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +R GMSQ F + S +S E+G P + + + + ++ E Sbjct: 13 VRELRIASGMSQEAFADHASIARSYMSRIERGGANPSLDAIQVLAEALGVDAGALF---E 69 Query: 178 VIVPKSIKRA 187 ++ P + A Sbjct: 70 IVEPATSYDA 79 >gi|229030998|ref|ZP_04187014.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271] gi|228730345|gb|EEL81309.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271] Length = 374 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 QIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YD 92 Sbjct: 65 IC 66 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIQIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELICFTPQMEQEDIKN 78 >gi|300767755|ref|ZP_07077665.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494740|gb|EFK29898.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 250 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R TQ ++A AV+ +E G SI L L + Y +S D + G Sbjct: 7 LKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDELVRG 64 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+ R G++Q + L + +S +E+G+ IP I + + LD + G Sbjct: 7 LKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDELVRG 64 >gi|28377772|ref|NP_784664.1| hypothetical protein lp_0949 [Lactobacillus plantarum WCFS1] gi|254555954|ref|YP_003062371.1| hypothetical protein JDM1_0787 [Lactobacillus plantarum JDM1] gi|308179946|ref|YP_003924074.1| hypothetical protein LPST_C0760 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270605|emb|CAD63511.1| unknown [Lactobacillus plantarum WCFS1] gi|254044881|gb|ACT61674.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|308045437|gb|ADN97980.1| hypothetical protein LPST_C0760 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 250 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R TQ ++A AV+ +E G SI L L + Y +S D + G Sbjct: 7 LKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDELVRG 64 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+ R G++Q + L + +S +E+G+ IP I + + LD + G Sbjct: 7 LKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDELVRG 64 >gi|327191555|gb|EGE58568.1| putative transcriptional regulator protein, LacI family [Rhizobium etli CNPAF512] Length = 189 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Q + +G RI+ +R T +++ + + ++ E S + + Sbjct: 2 EEQLEQAIGIRIRKLRLEKGLTLDDLSTASGVSRAMISRIERAEASPTASLLARICAALG 61 Query: 85 ISFDWIYDGE 94 +S + E Sbjct: 62 LSLSAFFAEE 71 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R++ +R +KG++ + G+ + +S E+ P +I L Sbjct: 8 AIGIRIRKLRLEKGLTLDDLSTASGVSRAMISRIERAEASPTASLLARICAALGLSLSAF 67 Query: 173 YFGDEVIVPKSIKRAKGN 190 + + +R Sbjct: 68 FAEERQQASPLARRQDQQ 85 >gi|218281836|ref|ZP_03488175.1| hypothetical protein EUBIFOR_00743 [Eubacterium biforme DSM 3989] gi|218217125|gb|EEC90663.1| hypothetical protein EUBIFOR_00743 [Eubacterium biforme DSM 3989] Length = 104 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RIK R+A N TQ+E+A N + V++ E G+ T + + + N ++S D Sbjct: 4 KAVGQRIKAAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFIAIANALDVSADT 63 Query: 90 IY 91 + Sbjct: 64 LL 65 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A+G R+K+ R+ K ++Q E L+ + + +S E+G + ++ I Sbjct: 1 MDLKAVGQRIKAAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFIAIANALDVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 D + + K K+ Sbjct: 61 ADTLLIDVVTHSVSGVTNELSEMIEKLPKE 90 >gi|154496775|ref|ZP_02035471.1| hypothetical protein BACCAP_01068 [Bacteroides capillosus ATCC 29799] gi|150274027|gb|EDN01127.1| hypothetical protein BACCAP_01068 [Bacteroides capillosus ATCC 29799] Length = 348 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 52/159 (32%), Gaps = 20/159 (12%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +IK +R + TQ+ +A + V+ +ENG I + + + D Sbjct: 2 RAELGNKIKQLRLQKSVTQETLAKTLHISCQTVSKWENGTSMPDILLLPEIAVYFGCTID 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 ++D + + + R+ + + + G+ E+ Sbjct: 62 DLFDL----SEQARFERIEHMLEMQEALSTEEFRQTEAFLKGKLGEK-----------ER 106 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 R + + D + E ++++ A Sbjct: 107 KS-----DALRLLSSLFNHKADELRRAAEFYAKEALELA 140 >gi|293401673|ref|ZP_06645815.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304931|gb|EFE46178.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 67 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ ++ +Q ++A N + + +E G I+ + L + Y S D++ + Sbjct: 5 RLKNLREDHDLSQSDIAKYLNISQRTYSYYETGGRDIPIQILIKLADYYNTSIDYLVNRT 64 Query: 95 VID 97 Sbjct: 65 NSK 67 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK++R+D +SQ + K L + T S YE G I+ K+ +D++ Sbjct: 6 LKNLREDHDLSQSDIAKYLNISQRTYSYYETGGRDIPIQILIKLADYYNTSIDYLV 61 >gi|254254842|ref|ZP_04948159.1| transcriptional regulator XRE family with cupin sensor domain [Burkholderia dolosa AUO158] gi|124899487|gb|EAY71330.1| transcriptional regulator XRE family with cupin sensor domain [Burkholderia dolosa AUO158] Length = 203 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 34/100 (34%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +S S + + VG +I+ +R T +++ A +S ++ E Sbjct: 1 MASSSGSRRTPASAVPQPPATTPPRVGEQIQRLRNERRLTLDDLSRAAGVSKSMLSEIER 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 + +I A L N I+ D ++ Sbjct: 61 DKANPTIAVAWRLTNALGITLDELFSQPKTPETIRVDGPH 100 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERRLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELFS- 86 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 87 -QPKTPETIR 95 >gi|84501143|ref|ZP_00999378.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391210|gb|EAQ03628.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 207 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++++RKA + T ++ A A S ++ ENG S + L IS ++ Sbjct: 27 LGDRVRELRKARDWTLEQAAREAGLARSTLSKIENGQMSPTYDALRKLATGLGISVPQLF 86 Query: 92 D 92 Sbjct: 87 T 87 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ +RK + + + + G+ STLS E G+ P RK+ + ++ Sbjct: 31 VRELRKARDWTLEQAAREAGLARSTLSKIENGQMSPTYDALRKLATGLGISVPQLFT 87 >gi|310286841|ref|YP_003938099.1| transcriptional regulator with helix-turn-helix domain [Bifidobacterium bifidum S17] gi|309250777|gb|ADO52525.1| Transcriptional regulator with helix-turn-helix domain [Bifidobacterium bifidum S17] Length = 415 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 30/71 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R N TQ+ +A+ A++ +E+ + L + + + + D + G+ Sbjct: 6 NLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLGD 65 Query: 95 VIDRRYEDVTN 105 V ++ Sbjct: 66 VSVSTSRPDSH 76 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R + M+Q LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRTNLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 172 IYFGDEVIVPKS 183 + GD + Sbjct: 61 LVLGDVSVSTSR 72 >gi|291456508|ref|ZP_06595898.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] gi|291381785|gb|EFE89303.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] Length = 161 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R+ TQ + A + A++ +E G SI + +E+ + Sbjct: 3 IGQVIKVVREERGLTQSQFAHKLFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMARLM 62 Query: 92 D 92 + Sbjct: 63 E 63 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +K +R+++G++Q +F L + LS +E+G P I R I + + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHKLFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 172 IY 173 + Sbjct: 61 LM 62 >gi|224282399|ref|ZP_03645721.1| Xre-type transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313139541|ref|ZP_07801734.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132051|gb|EFR49668.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 415 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 30/71 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R N TQ+ +A+ A++ +E+ + L + + + + D + G+ Sbjct: 6 NLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLGD 65 Query: 95 VIDRRYEDVTN 105 V ++ Sbjct: 66 VSVSTSRPDSH 76 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R + M+Q LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRTNLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 172 IYFGDEVIVPKS 183 + GD + Sbjct: 61 LVLGDVSVSTSR 72 >gi|206975640|ref|ZP_03236552.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] gi|206746102|gb|EDZ57497.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] Length = 110 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RI++ R N TQ+ +A N S + E G + S+ + L ++ D Sbjct: 3 YKKLGNRIREERLKLNLTQEILAEDINISVSYMGQIERGERNLSLDTLVKLAYRLSVTVD 62 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 ++ V + L Sbjct: 63 YLLLDSVQANNENSIKQFASL 83 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 35/91 (38%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G R++ R ++Q + + + S + E+G + K+ Sbjct: 1 MDYKKLGNRIREERLKLNLTQEILAEDINISVSYMGQIERGERNLSLDTLVKLAYRLSVT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 +D++ ++ + + +S+K+ Sbjct: 61 VDYLLLDSVQANNENSIKQFASLIDGRSQKE 91 >gi|70730070|ref|YP_259809.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344369|gb|AAY91975.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 208 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI+ +RK T E+A + ++ E + SI + ++ W + Sbjct: 29 LGTRIRGLRKRRGLTLSELAQQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWFF 88 Query: 92 DGEVIDRRYED 102 E + Sbjct: 89 ASETQTAPEDQ 99 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 32/86 (37%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 N+ P +G R++ +RK +G++ E + + +S E+ P I Sbjct: 13 PPETGTDNQAPGGPQFLGTRIRGLRKRRGLTLSELAQQSELTAGYISQLERNLAYPSIPA 72 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKS 183 I + + W + + P+ Sbjct: 73 LFNIARSLGVTIQWFFASETQTAPED 98 >gi|311063744|ref|YP_003970469.1| transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|310866063|gb|ADP35432.1| Transcriptional regulator [Bifidobacterium bifidum PRL2010] Length = 415 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 31/71 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R N TQ+ +A+ A++ +E+ + L + + + + D + G+ Sbjct: 6 NLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLGD 65 Query: 95 VIDRRYEDVTN 105 V + ++ Sbjct: 66 VSVSASQPDSH 76 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R + M+Q LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRTNLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVLGD 65 >gi|306826725|ref|ZP_07460027.1| DNA-binding protein [Streptococcus pyogenes ATCC 10782] gi|304431014|gb|EFM34021.1| DNA-binding protein [Streptococcus pyogenes ATCC 10782] Length = 195 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ RK +Q+E+A +++ +EN I L L +++S D + Sbjct: 2 EIGQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++SN+E +T P+I + Q+ + LD Sbjct: 1 MEIGQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFKRDTK 86 >gi|229551306|ref|ZP_04440031.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540940|ref|YP_003175439.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|229315265|gb|EEN81238.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257152616|emb|CAR91588.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 189 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 30/87 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +R TQ ++A V+ +E G ++ L + Y+I+ D + Sbjct: 6 LGNHLKTLRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQITVDELL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + A+ + Sbjct: 66 RPVPSKATKKTSARPVTFLGPALAIMI 92 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G LK++R + ++Q + L + T+S +E GR P+++ ++ + Sbjct: 1 MTTSVLGNHLKTLRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQIT 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDELL 65 >gi|166032344|ref|ZP_02235173.1| hypothetical protein DORFOR_02047 [Dorea formicigenerans ATCC 27755] gi|166028067|gb|EDR46824.1| hypothetical protein DORFOR_02047 [Dorea formicigenerans ATCC 27755] Length = 116 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 5/103 (4%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +++G+R+K +R+ N TQ E+A + ++ EN + S+R +Y + Sbjct: 13 NFEENLGSRVKKLRQEMNLTQAEVADALHVTPGYISNVENNRTAMSLRILIYYAKLMNTT 72 Query: 87 FDWIYDGEVIDRRYEDVTNK-----KRLDPYAIGARLKSIRKD 124 D + + + N+ +++ + ++R Sbjct: 73 LDSLVGSLEPAYKENALDNEVMHLVAQMNDLEKQKLINTLRIW 115 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+K +R++ ++Q E L + +SN E RT ++ ++ LD + Sbjct: 20 SRVKKLRQEMNLTQAEVADALHVTPGYISNVENNRTAMSLRILIYYAKLMNTTLDSLVGS 79 Query: 176 DEVIVPKS 183 E ++ Sbjct: 80 LEPAYKEN 87 >gi|114767315|ref|ZP_01446138.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114540568|gb|EAU43642.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 212 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 K Q + + +G +++D+RK T E+A ++ ENG+ S Sbjct: 8 KLTQNPHAVREQREKNLEVAIGRQVRDLRKRQRMTGSELAQQTGLSVGMLSKIENGVISP 67 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 S+ L N + ++ G R Sbjct: 68 SLNTLQALANALRVPLVQLFSGFEEPRGAM 97 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG +++ +RK + M+ E + G+ LS E G P + + + + L + Sbjct: 27 AIGRQVRDLRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSLNTLQALANALRVPLVQL 86 Query: 173 YFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + G +E +K +G + + + N Sbjct: 87 FSGFEEPRGAMHVKAGQGVEIERAGTRAGHQYN 119 >gi|90962310|ref|YP_536226.1| DNA-binding protein [Lactobacillus salivarius UCC118] gi|90821504|gb|ABE00143.1| DNA-binding protein [Lactobacillus salivarius UCC118] Length = 203 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 10/139 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G I RK + TQ +A + AV+ +ENG L L EI+ + Sbjct: 3 QKKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLDLCQLLEINVN 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + GE I + ++ L K+ R+ + L + L Sbjct: 63 ELLTGEQIVMKDYKKIAEQNLIELRNQKE-KADRRLL-TTVKILATLSCISAVVLILM-- 118 Query: 149 GRTIPEIKPARKIKQVTKK 167 KI Q Sbjct: 119 ------GTLLTKISQFLGI 131 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 49/92 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + RKD +Q K LG+ + +S +E G++IP+ + Q+ + + Sbjct: 1 MEQKKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLDLCQLLEIN 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ + G+++++ K A+ N +++K+K Sbjct: 61 VNELLTGEQIVMKDYKKIAEQNLIELRNQKEK 92 >gi|148253455|ref|YP_001238040.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405628|gb|ABQ34134.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 225 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 2/74 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ +RK + T E+ A ++ ENG S S+ L + + Sbjct: 41 EIGAEVRRLRKDLDLTVSELGAAAGISAGMLSKIENGSISPSLATLSALAKALNVPIARL 100 Query: 91 Y--DGEVIDRRYED 102 + +GE D + Sbjct: 101 FRENGEERDCSFVK 114 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 7/111 (6%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + G + + + IGA ++ +RKD ++ E G G+ LS E Sbjct: 23 ELLTGSLAPKDATPTLESE------IGAEVRRLRKDLDLTVSELGAAAGISAGMLSKIEN 76 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGD-EVIVPKSIKRAKGNQSSKKSKK 198 G P + + + + ++ + E +K +G + ++ K Sbjct: 77 GSISPSLATLSALAKALNVPIARLFRENGEERDCSFVKAGQGVRIERRGTK 127 >gi|332366465|gb|EGJ44213.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 94 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 31/85 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K IR+ +Q ++A ++ +EN + L + Y+IS D + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDELC 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + L Sbjct: 62 GRKTLSISKDSSIKSMILTNACTLW 86 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +LK IR+ KG SQ + + LG T+SN+E +TI + ++ + LD + Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|228994922|ref|ZP_04154700.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] gi|228764824|gb|EEM13600.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] Length = 116 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK++RK N TQ+++ + A++ FE G S + + + ++ D++ Sbjct: 2 IGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E+ + I A ++S+ Sbjct: 62 GRSEDPELSEEENKIVTEEGKNILALIESL 91 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++K +RK+ ++Q + G +G+ +S +E+G+ P + KI D++ Sbjct: 1 MIGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSK 194 E + + K Sbjct: 61 LGRSEDPELSEEENKIVTEEGK 82 >gi|229029511|ref|ZP_04185592.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] gi|228731793|gb|EEL82694.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] Length = 181 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ G+ S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMAGITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|160938794|ref|ZP_02086145.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC BAA-613] gi|158437757|gb|EDP15517.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC BAA-613] Length = 230 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + P VG I +RK +Q+++A + AV+ +E G + L Sbjct: 1 MVPGGTAMKNTVGKNIVKLRKEQGMSQEQLAQKIHVTRQAVSNWETGRSQPDLDMLETLA 60 Query: 81 NEYEISF 87 + + Sbjct: 61 SAFGTDI 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 34/81 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + +RK++GMSQ + + + + +SN+E GR+ P++ + + + +G Sbjct: 14 KNIVKLRKEQGMSQEQLAQKIHVTRQAVSNWETGRSQPDLDMLETLASAFGTDILVVIYG 73 Query: 176 DEVIVPKSIKRAKGNQSSKKS 196 R+ + K Sbjct: 74 QMPAGADEETRSAVRKRHLKK 94 >gi|116751481|ref|YP_848168.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700545|gb|ABK19733.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 432 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 32/79 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+K++R +Q E+A S ++ E+ + S+ + + + Sbjct: 252 DLGLRLKELRTKRGISQTELAKSVGVTPSTISQVESNLIYPSLPALMKMAEVLSVDISSF 311 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + + ++ + + L Sbjct: 312 FQERLAGKKKFVFSAMESL 330 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R +G+SQ E K +G+ ST+S E P + K+ +V + + Sbjct: 257 LKELRTKRGISQTELAKSVGVTPSTISQVESNLIYPSLPALMKMAEVLSVDISSFF 312 >gi|219667669|ref|YP_002458104.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537929|gb|ACL19668.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 368 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 R+ TQ E+A +++V+ +E G I + L + IS D + R Sbjct: 14 RREKGITQDELAAYIGVSKASVSKWETGQSYPDITFLPLLAAYFNISIDELMSYSPQMER 73 Query: 100 YE 101 + Sbjct: 74 SD 75 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + + L + R++KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINLASVLVAKRREKGITQDELAAYIGVSKASVSKWETGQSYPDITFLPLLAAYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + I + Sbjct: 61 IDELMSYSPQMERSDIAK 78 >gi|331085854|ref|ZP_08334937.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406777|gb|EGG86282.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 179 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 36/91 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R TQ+E+A A + ++ E + S SI + L + Sbjct: 2 NIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTNLKDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ + + ++ I Sbjct: 62 FSDDSDEQIVFPKEDFFEKTDAELLNTIEWI 92 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+ +R +KG++Q E + +S E+ T P I + Q +L Sbjct: 1 MNIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTNLKD 60 Query: 172 IYFGD 176 + D Sbjct: 61 FFSDD 65 >gi|325264449|ref|ZP_08131179.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030111|gb|EGB91396.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 100 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +R NN TQ ++A +S ++ +E G+ S + + ++++ D++ Sbjct: 4 FGNTLKTLRLLNNLTQAKLAQRLGVTKSVISAYETGLRMPSYDILISISQIFKVTTDYLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 E + A+ +K++++ G Sbjct: 64 GLEKKQDLDLSGLTADEI--QALTDLIKAMKRRSG 96 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK++R ++Q + + LG+ S +S YE G +P I Q+ K D Sbjct: 1 MVYFGNTLKTLRLLNNLTQAKLAQRLGVTKSVISAYETGLRMPSYDILISISQIFKVTTD 60 Query: 171 WIYFGDE 177 ++ ++ Sbjct: 61 YLLGLEK 67 >gi|322374490|ref|ZP_08049004.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C300] gi|321279990|gb|EFX57029.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C300] Length = 96 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G ++K R+ N +Q ++A ++ +EN + L + Y+IS D Sbjct: 1 MQMLGKQLKLFREQNGYSQNQIAEYLGTTRQTISNWENDKTIIDSHSLIRLADFYQISLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + + I L Sbjct: 61 ELCGRKKIPVYKNSKIKSMIL 81 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +LK R+ G SQ + + LG T+SN+E +TI + ++ + LD Sbjct: 1 MQMLGKQLKLFREQNGYSQNQIAEYLGTTRQTISNWENDKTIIDSHSLIRLADFYQISLD 60 Query: 171 WIYFGDEVIVPKSIK 185 + ++ V K+ K Sbjct: 61 ELCGRKKIPVYKNSK 75 >gi|222032723|emb|CAP75462.1| Repressor protein [Escherichia coli LF82] Length = 216 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 30/87 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L N + S D++ Sbjct: 6 MGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDYLI 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + Y + + + Sbjct: 66 KGEESLSNIAYHSRHDPRGSYPLISWV 92 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 36/71 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G R+++ RK+ + Q GK++G+ N +S +E+ T P + + K Sbjct: 1 MKTQLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCS 60 Query: 169 LDWIYFGDEVI 179 D++ G+E + Sbjct: 61 PDYLIKGEESL 71 >gi|160933518|ref|ZP_02080906.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] gi|156867395|gb|EDO60767.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] Length = 169 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK IRK+ +Q+E+A+ N + ++ +ENG+ + + E + Sbjct: 4 ENIKAIRKSKGLSQEELAVKLNVVRQTISKWENGLSVPDSDMLISISEALETPVSVLLGE 63 Query: 94 EVIDRRYEDVT 104 V + +D+ Sbjct: 64 PVAEPEADDLK 74 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +E G ++P+ I + + + + Sbjct: 1 MLNENIKAIRKSKGLSQEELAVKLNVVRQTISKWENGLSVPDSDMLISISEALETPVSVL 60 Query: 173 YFGDEVIVPK 182 G+ V P+ Sbjct: 61 L-GEPVAEPE 69 >gi|91211688|ref|YP_541674.1| repressor protein [Escherichia coli UTI89] gi|117624572|ref|YP_853485.1| putative phage repressor protein [Escherichia coli APEC O1] gi|218559304|ref|YP_002392217.1| Repressor protein CII [Escherichia coli S88] gi|218695990|ref|YP_002403657.1| Repressor protein CII [Escherichia coli 55989] gi|91073262|gb|ABE08143.1| repressor protein [Escherichia coli UTI89] gi|115513696|gb|ABJ01771.1| putative phage repressor protein [Escherichia coli APEC O1] gi|148566149|gb|ABQ88424.1| prophage repressor [Enterobacteria phage CUS-3] gi|218352722|emb|CAU98505.1| Repressor protein CII [Escherichia coli 55989] gi|218366073|emb|CAR03818.1| Repressor protein CII [Escherichia coli S88] gi|294490247|gb|ADE89003.1| repressor protein C2 [Escherichia coli IHE3034] gi|307626074|gb|ADN70378.1| Repressor protein CII [Escherichia coli UM146] gi|312945519|gb|ADR26346.1| Repressor protein CII [Escherichia coli O83:H1 str. NRG 857C] gi|323948802|gb|EGB44701.1| peptidase S24 [Escherichia coli H252] gi|324117735|gb|EGC11634.1| peptidase S24 [Escherichia coli E1167] Length = 216 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 30/87 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L N + S D++ Sbjct: 6 MGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDYLM 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + Y + + + Sbjct: 66 KGEESLSNIAYHSRHDPRGSYPLISWV 92 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 36/71 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G R+++ RK+ + Q GK++G+ N +S +E+ T P + + K Sbjct: 1 MKTQLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCS 60 Query: 169 LDWIYFGDEVI 179 D++ G+E + Sbjct: 61 PDYLMKGEESL 71 >gi|57865959|ref|YP_187612.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|293367592|ref|ZP_06614245.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|57636617|gb|AAW53405.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|291318305|gb|EFE58698.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329736040|gb|EGG72313.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 189 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V +IK R+ + +Q+ +A ++ +EN I L + +++S D + Sbjct: 2 NVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + + +++ K LD + + Sbjct: 62 VEDDLKNVQIKNIK--KELDFWTWMMII 87 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + + + T+SN+E ++ P+I + Q+ K LD Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 172 IYFGD 176 + D Sbjct: 61 LVEDD 65 >gi|325694303|gb|EGD36217.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] Length = 94 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K IR+ +Q ++A ++ +EN + L + Y+IS D + Sbjct: 2 LGKQLKLIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +LK IR+ KG SQ + + LG T+SN+E +TI + ++ + LD + Sbjct: 1 MLGKQLKLIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|317055585|ref|YP_004104052.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447854|gb|ADU21418.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 313 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 7/99 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G+ I+ +R+ + TQ+++A AV+ +E + I L N ++++ D Sbjct: 1 MMTIGSTIRQLRQEQDITQEQLAEALGITSRAVSQWECDRTTPDISQLPALANFFDVTTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRL-------DPYAIGARLKS 120 + ++ + YE K + D L+ Sbjct: 61 HLLGVDISRKEYEISKILKHIQISGVSGDREETERYLRE 99 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG+ ++ +R+++ ++Q + + LG+ + +S +E RT P+I + D Sbjct: 1 MMTIGSTIRQLRQEQDITQEQLAEALGITSRAVSQWECDRTTPDISQLPALANFFDVTTD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + D I + Sbjct: 61 HLLGVDISRKEYEISK 76 >gi|229018544|ref|ZP_04175403.1| hypothetical protein bcere0030_30680 [Bacillus cereus AH1273] gi|229024800|ref|ZP_04181236.1| hypothetical protein bcere0029_31090 [Bacillus cereus AH1272] gi|228736511|gb|EEL87070.1| hypothetical protein bcere0029_31090 [Bacillus cereus AH1272] gi|228742756|gb|EEL92897.1| hypothetical protein bcere0030_30680 [Bacillus cereus AH1273] Length = 374 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 + + Sbjct: 66 SYTPQMEQEDIKN 78 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYTPQMEQEDIKN 78 >gi|160878258|ref|YP_001557226.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426924|gb|ABX40487.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 163 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G I D RK TQ+++A A++ +E G I L I+ + Sbjct: 4 EKIGKFIADRRKVRGLTQQQLADDLGLTNKAISKWETGQGMPDITTLPILAEMLGITVNE 63 Query: 90 IYDGEVIDRRYEDVT 104 + GE+ + Sbjct: 64 LLKGELNQSIDKKEN 78 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + RK +G++Q + LG+ N +S +E G+ +P+I + ++ Sbjct: 1 MDTEKIGKFIADRRKVRGLTQQQLADDLGLTNKAISKWETGQGMPDITTLPILAEMLGIT 60 Query: 169 LDWIYFGD 176 ++ + G+ Sbjct: 61 VNELLKGE 68 >gi|332685598|ref|YP_004455372.1| XRE family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332369607|dbj|BAK20563.1| transcriptional regulator, XRE family [Melissococcus plutonius ATCC 35311] Length = 193 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK R+++G +Q + +L + ++SN+E ++ P++ ++ Q LD Sbjct: 1 MLLSKVLKKKRQERGETQQQVADMLHISRQSISNWENNKSYPDVPTLIELSQYFDFSLD- 59 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + GD+ ++ K K + K++KK Sbjct: 60 VLKGDDDLMKKIKKDYEFIHKEKENKK 86 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K R+ +TQ+++A + +++ +EN + + L ++ S D + Sbjct: 3 LSKVLKKKRQERGETQQQVADMLHISRQSISNWENNKSYPDVPTLIELSQYFDFSLDVLK 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++ + + +L Sbjct: 63 GDDDLMKKIKKDYEFIHKEKENKKYQL 89 >gi|270290740|ref|ZP_06196964.1| XRE family DNA-binding protein [Pediococcus acidilactici 7_4] gi|270280800|gb|EFA26634.1| XRE family DNA-binding protein [Pediococcus acidilactici 7_4] Length = 108 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K RK + TQ ++A + + V+ +E G+ S+ + + N + S D++ Sbjct: 16 RLKSARKLKHFTQLDLANRLDVSKGTVSAYEQGLSYPSLETLVKICNILDTSADYLL 72 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 35/72 (48%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 +K ++ + RLKS RK K +Q++ L + T+S YEQG + P ++ KI Sbjct: 1 MNGGQKHMNITSFNTRLKSARKLKHFTQLDLANRLDVSKGTVSAYEQGLSYPSLETLVKI 60 Query: 162 KQVTKKHLDWIY 173 + D++ Sbjct: 61 CNILDTSADYLL 72 >gi|268317796|ref|YP_003291515.1| transcriptional regulator, XRE family [Rhodothermus marinus DSM 4252] gi|262335330|gb|ACY49127.1| transcriptional regulator, XRE family [Rhodothermus marinus DSM 4252] Length = 505 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 31/70 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R+ T +++A A S ++ E G + L + + +S++ + Sbjct: 12 LGLKLKALRQQRGLTLQDVASRAGLSVSYLSEIEKGKKFPKPDKLIDLASVFSVSYEELI 71 Query: 92 DGEVIDRRYE 101 + +R Sbjct: 72 SPRLDERLDP 81 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-- 175 LK++R+ +G++ + G+ S LS E+G+ P+ + V + + Sbjct: 16 LKALRQQRGLTLQDVASRAGLSVSYLSEIEKGKKFPKPDKLIDLASVFSVSYEELISPRL 75 Query: 176 DEVIVP 181 DE + P Sbjct: 76 DERLDP 81 >gi|327468544|gb|EGF14023.1| hypothetical protein HMPREF9386_1402 [Streptococcus sanguinis SK330] Length = 88 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RKA +Q+ +A AV+ +E+ + + + + + ++ D++ Sbjct: 2 NLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + E+ + K Sbjct: 62 LKGIEPVVQKEEEQSIKY 79 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +RK +G+SQ LG+ +S +E +++P++ + D+ Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + G E +V K +++ Sbjct: 61 LLKGIEPVVQKEEEQS 76 >gi|329116452|ref|ZP_08245169.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906857|gb|EGE53771.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 122 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 34/77 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N +Q +A A++ +EN + + L +E+S D + G Sbjct: 6 EQLKHFRLEKNFSQDYLADQLFISRQAISKWENNEAYPDMTNLIKLSTIFEVSLDQLILG 65 Query: 94 EVIDRRYEDVTNKKRLD 110 + ++ E + KK L+ Sbjct: 66 KNPEKTVERIVEKKTLN 82 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK R +K SQ L + +S +E P++ K+ + + LD Sbjct: 1 MNKFSEQLKHFRLEKNFSQDYLADQLFISRQAISKWENNEAYPDMTNLIKLSTIFEVSLD 60 Query: 171 WIYFGD--EVIVPKSIKRAKGNQSS 193 + G E V + +++ N S Sbjct: 61 QLILGKNPEKTVERIVEKKTLNIKS 85 >gi|293115444|ref|ZP_05791516.2| DNA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292809724|gb|EFF68929.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 202 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 35/87 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I + RK TQK ++ + ++ +E G + + L +E +I+ + + Sbjct: 6 KIGGFIAEERKRKGYTQKILSEKLGISDKTISKWERGNGFPEVSLLIPLCSELDITVNEL 65 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 GE + ++ + A+ Sbjct: 66 LSGERVSEEQYRKKAEENMVNLVKEAQ 92 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D IG + RK KG +Q + LG+ + T+S +E+G PE+ + Sbjct: 1 MMDQIKIGGFIAEERKRKGYTQKILSEKLGISDKTISKWERGNGFPEVSLLIPLCSELDI 60 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSS--KKSKKDKKS 202 ++ + G+ V + K+A+ N + K+++++KK Sbjct: 61 TVNELLSGERVSEEQYRKKAEENMVNLVKEAQENKKK 97 >gi|229818666|ref|YP_002880192.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564579|gb|ACQ78430.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 201 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++D+R+ + T +++A + ++ ENG SI L ++ ++ Sbjct: 25 LGDRLRDLRRQHGLTLRDVAGQTGLSVALLSQIENGRTDPSITSLRKLARAFDAEVATLF 84 Query: 92 DGEVIDRRYEDVTNKKRL 109 + ++ L Sbjct: 85 HEPDAPSVHISRPGERFL 102 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +G RL+ +R+ G++ + G+ + LS E GRT P I RK+ + + Sbjct: 23 HVLGDRLRDLRRQHGLTLRDVAGQTGLSVALLSQIENGRTDPSITSLRKLARAFDAEVAT 82 Query: 172 IYFGDE 177 ++ + Sbjct: 83 LFHEPD 88 >gi|255021528|ref|ZP_05293572.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus ATCC 51756] gi|254969056|gb|EET26574.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus ATCC 51756] Length = 181 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 36/89 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +++ +R+ + + + A SA++ E G S SI + N + Sbjct: 1 MEQLGRQLQKLREERQLSLRSLGELAGVSASAISQMEAGKVSPSIATLEKICNALGVHIA 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 ++D D+ + +R Y+ + Sbjct: 61 SLFDEPQGDQGPILLRTNERRRVYSADSH 89 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +L+ +R+++ +S G+L G+ S +S E G+ P I KI H+ ++ Sbjct: 6 RQLQKLREERQLSLRSLGELAGVSASAISQMEAGKVSPSIATLEKICNALGVHIASLF-- 63 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 DE + + N+ + D +S Sbjct: 64 DEPQGDQGPILLRTNERRRVYSADSHAS 91 >gi|311900507|dbj|BAJ32915.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 192 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 33/75 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R A + +E+A AN +S+++ ENG ++ + L N + + D + + Sbjct: 14 KRIRALRVAQGWSLEELAARANLSQSSLSRIENGQRRLALDQLVTLANALDTTLDQLVET 73 Query: 94 EVIDRRYEDVTNKKR 108 D + Sbjct: 74 AAEDVVISPTVDGPH 88 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++++R +G S E + S+LS E G+ + + LD + Sbjct: 13 RKRIRALRVAQGWSLEELAARANLSQSSLSRIENGQRRLALDQLVTLANALDTTLDQLV 71 >gi|229070774|ref|ZP_04204003.1| hypothetical protein bcere0025_29500 [Bacillus cereus F65185] gi|228712353|gb|EEL64299.1| hypothetical protein bcere0025_29500 [Bacillus cereus F65185] Length = 374 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 6 IHKIIADKRKEKGITQEELATYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 ++ + Sbjct: 66 SYTPQMKQEDIKN 78 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIADKRKEKGITQEELATYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYTPQMKQEDIKN 78 >gi|225867621|ref|YP_002743569.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus] gi|225700897|emb|CAW97557.1| putative DNA-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 120 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 31/92 (33%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++K R +Q +A A++ +ENG + + + L E++ D Sbjct: 1 MTKFAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + G+ + T K + K Sbjct: 61 ELVTGKEPAIKVIKKTEKPMNVWEFLTEESKR 92 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK R +K +SQ + L + +S +E G P+++ + V + LD Sbjct: 1 MTKFAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLD 60 Query: 171 WIYFGDEVIVPKSIKRAK 188 + G E + K K Sbjct: 61 ELVTGKEPAIKVIKKTEK 78 >gi|291560817|emb|CBL39617.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 110 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +VG R+K +RK TQ+++A + + ++ EN ++R Y +S D Sbjct: 6 YTNVGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSID 65 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 ++ E + +D K + Sbjct: 66 YLLRPESDENGEKDDVLNKEI 86 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++D +G R+K++RK G +Q + L + + +SN E R ++ ++ Sbjct: 1 MYQIDYTNVGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLL 60 Query: 166 KKHLDWIYFG--DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 +D++ DE + + + +K D K Sbjct: 61 NVSIDYLLRPESDENGEKDDVLNKEILRLLEKFSTDDKEK 100 >gi|9630190|ref|NP_046617.1| putative SPbeta phage repressor [Bacillus phage SPBc2] gi|16079161|ref|NP_389985.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221310009|ref|ZP_03591856.1| hypothetical protein Bsubs1_11581 [Bacillus subtilis subsp. subtilis str. 168] gi|221314331|ref|ZP_03596136.1| hypothetical protein BsubsN3_11502 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319253|ref|ZP_03600547.1| hypothetical protein BsubsJ_11428 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323529|ref|ZP_03604823.1| hypothetical protein BsubsS_11557 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342058|sp|O31943|YONR_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized HTH-type transcriptional regulator yonR gi|2634522|emb|CAB14020.1| putative transcriptional regulator (Xre family); phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|3025543|gb|AAC13038.1| putative SPbeta phage repressor [Bacillus phage SPbeta] Length = 108 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 29/89 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K R + +Q+ MA +E G ++ L N +S D++ Sbjct: 2 FGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 G +++ N + Sbjct: 62 KGTHAQFDLDEILNDPETLIAGYNGMISE 90 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK R KG SQ LG+ YE G+ P++K K+ + D++ Sbjct: 1 MFGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFL 60 Query: 173 YFG 175 G Sbjct: 61 LKG 63 >gi|325262886|ref|ZP_08129622.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324031980|gb|EGB93259.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 81 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +RK N TQ++MA N ++ +E G I + + + ++IS D I Sbjct: 5 KIGCKIRALRKMNYLTQEQMAKKLNMTRQTLSNYELGKRIPDIFELIRIADLFQISLDEI 64 Query: 91 YDGEVIDRRYED 102 + + +D Sbjct: 65 VGRNPNNLKNKD 76 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++++RK ++Q + K L M TLSNYE G+ IP+I +I + + LD I Sbjct: 8 CKIRALRKMNYLTQEQMAKKLNMTRQTLSNYELGKRIPDIFELIRIADLFQISLDEIV 65 >gi|325263078|ref|ZP_08129813.1| DNA-binding protein [Clostridium sp. D5] gi|324031471|gb|EGB92751.1| DNA-binding protein [Clostridium sp. D5] Length = 207 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G I+ IRK TQ+E++ +++ E G+ + L +++ + Sbjct: 8 YKWLGHNIQVIRKLKGLTQQELSEQIGINLQSLSKIERGINYPTFDTLQKLAEILDVTPN 67 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + GE+ + + K L+ Sbjct: 68 ELLAGELKSTSHIEANILKFLEHEERLN 95 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 35/69 (50%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D +G ++ IRK KG++Q E + +G+ +LS E+G P +K+ ++ Sbjct: 5 FMDYKWLGHNIQVIRKLKGLTQQELSEQIGINLQSLSKIERGINYPTFDTLQKLAEILDV 64 Query: 168 HLDWIYFGD 176 + + G+ Sbjct: 65 TPNELLAGE 73 >gi|261344094|ref|ZP_05971738.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567684|gb|EFB73219.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 91 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 29/83 (34%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E +Y +G RIK +R N + + + ++ +E G+ + Sbjct: 1 MENERYKYSLSIGQRIKSLRLQNGWSGDALGKVTGISQQQISRYERGVNRIDVESLAKFA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDV 103 N + +S + + + Sbjct: 61 NAFNVSIVVLLSDYDKTIYDKSI 83 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + N++ +IG R+KS+R G S GK+ G+ +S YE+G +++ K Sbjct: 1 MENERYKYSLSIGQRIKSLRLQNGWSGDALGKVTGISQQQISRYERGVNRIDVESLAKFA 60 Query: 163 QVTKKHLDWIYFG-DEVIVPKSI 184 + + D+ I KSI Sbjct: 61 NAFNVSIVVLLSDYDKTIYDKSI 83 >gi|223986398|ref|ZP_03636404.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] gi|223961640|gb|EEF66146.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] Length = 358 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 8/111 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G I RK TQ ++A + AV+ +E G L I+ Sbjct: 3 QMKIGGFIALCRKEKGWTQSQLAEILGITDKAVSKWETGKSLPDYALLTPLSEALGITLS 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 ++ GE I + L L+ I G + + Sbjct: 63 ELFSGERIRAEDLMEKTDQVL--------LEVIAGWLGRDEQAPADKSSLS 105 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 40/80 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + RK+KG +Q + ++LG+ + +S +E G+++P+ + + Sbjct: 1 MDQMKIGGFIALCRKEKGWTQSQLAEILGITDKAVSKWETGKSLPDYALLTPLSEALGIT 60 Query: 169 LDWIYFGDEVIVPKSIKRAK 188 L ++ G+ + +++ Sbjct: 61 LSELFSGERIRAEDLMEKTD 80 >gi|254933343|ref|ZP_05266702.1| transcriptional regulator [Listeria monocytogenes HPB2262] gi|293584903|gb|EFF96935.1| transcriptional regulator [Listeria monocytogenes HPB2262] Length = 158 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + +RK+ N TQ ++A + + +E + + + +++S D++ Sbjct: 2 FGDILMKLRKSKNLTQSDIAKILGVARTTYSSYEQNRRMPDAEIQIKIADYFDVSLDYL- 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + T +D A +K I Sbjct: 61 --HGRGKNNIADTIAAHIDSNASEEDIKEI 88 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G L +RK K ++Q + K+LG+ +T S+YEQ R +P+ + KI LD++ Sbjct: 1 MFGDILMKLRKSKNLTQSDIAKILGVARTTYSSYEQNRRMPDAEIQIKIADYFDVSLDYL 60 >gi|328947407|ref|YP_004364744.1| hypothetical protein Tresu_0498 [Treponema succinifaciens DSM 2489] gi|328447731|gb|AEB13447.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 195 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ + + G +++ +R+ + T K +A A ES V+ E S +I L + Sbjct: 1 MSEDENKRQYQFGEKLRAVRERKHLTLKAVAAHAKVSESLVSQIERNKVSPAIDTLLDIA 60 Query: 81 NEYEISFDWIYDGEVIDRR 99 + +IS +++++ R Sbjct: 61 DALDISLEFLFEEYSRRRP 79 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 36/95 (37%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 ++ + Y G +L+++R+ K ++ + S +S E+ + P I I Sbjct: 1 MSEDENKRQYQFGEKLRAVRERKHLTLKAVAAHAKVSESLVSQIERNKVSPAIDTLLDIA 60 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 L++++ P S+ + + + Sbjct: 61 DALDISLEFLFEEYSRRRPVSVIHREDRRKINEED 95 >gi|256957168|ref|ZP_05561339.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256947664|gb|EEU64296.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|315034185|gb|EFT46117.1| helix-turn-helix protein [Enterococcus faecalis TX0027] Length = 191 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK+ R+ N +Q+E+A ++ +EN I L L +++S D + Sbjct: 2 NLNKQIKNYREEFNFSQEELAKKLFVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDEL 61 Query: 91 YDGEVIDRRYE 101 G+V + + Sbjct: 62 VKGDVEKMKEK 72 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 39/83 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K+ R++ SQ E K L + T+SN+E R+ P+I + + LD Sbjct: 1 MNLNKQIKNYREEFNFSQEELAKKLFVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD + + I ++ +K Sbjct: 61 LVKGDVEKMKEKIANVNMDKYTK 83 >gi|229162203|ref|ZP_04290172.1| hypothetical protein bcere0009_29800 [Bacillus cereus R309803] gi|228621253|gb|EEK78110.1| hypothetical protein bcere0009_29800 [Bacillus cereus R309803] Length = 374 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 1/104 (0%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I D RK TQ+E+ +++V+ +E G I + L + + IS D + Sbjct: 5 QIHKIIADKRKEKGITQEELGAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQIEFG 133 + + RL K + + + M + + Sbjct: 65 ISYTPQMEQEDIKNLYHRLAEAFSEEPFDKVMIECREMIKKYYS 108 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E G +G+ +++S +E G++ P+I + Sbjct: 1 MREIQIHKIIADKRKEKGITQEELGAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYTPQMEQEDIKN 78 >gi|328887776|emb|CAJ70012.2| Transcriptional regulator, AbrB family [Clostridium difficile] Length = 141 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +RK N TQ+E+A N ++ +E+G I + L Y + D + Sbjct: 2 INENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDICSCIKLAKLYNVKLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K Sbjct: 62 NHSEEKTGIIVPPKGKFF 79 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I LKS+RK +Q E + L + +++ +E G +IP+I K+ ++ LD + Sbjct: 1 MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDICSCIKLAKLYNVKLDDL 60 Query: 173 YFGDEV 178 E Sbjct: 61 VNHSEE 66 >gi|313114612|ref|ZP_07800120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623076|gb|EFQ06523.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 210 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K RK +Q E+A + AV +E+G S + + D++ Sbjct: 7 LKQCRKKQGISQAELASKLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADYLL 62 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK RK +G+SQ E LG+ + +E G++ P+ +I ++ D+ Sbjct: 1 MSFSELLKQCRKKQGISQAELASKLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|310778021|ref|YP_003966354.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM 2926] gi|309747344|gb|ADO82006.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM 2926] Length = 182 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 38/88 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R + +++A + S ++ E G S SI + N ++ ++ Sbjct: 3 LGERIKKNRNEKGLSLRDLAGRVDLSASFLSQIEQGKASPSIENLKKIANCLDVRVSYLI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + + + + + + +R +I + K Sbjct: 63 EDDEVKKNTDIIRKGERHFIESIDSNTK 90 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 40/92 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G R+K R +KG+S + + + S LS EQG+ P I+ +KI + + Sbjct: 1 MSLGERIKKNRNEKGLSLRDLAGRVDLSASFLSQIEQGKASPSIENLKKIANCLDVRVSY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DEV I R + + K S Sbjct: 61 LIEDDEVKKNTDIIRKGERHFIESIDSNTKIS 92 >gi|227892275|ref|ZP_04010080.1| DNA-binding protein [Lactobacillus salivarius ATCC 11741] gi|227865916|gb|EEJ73337.1| DNA-binding protein [Lactobacillus salivarius ATCC 11741] Length = 211 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 10/139 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G I RK + TQ +A + AV+ +ENG L L EI+ + Sbjct: 11 QEKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLDLCQLLEINVN 70 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + GE I + ++ L K+ R+ + L + L Sbjct: 71 ELLTGEQIVMKDYKKIAEQNLIELRNQKE-KADRRLL-TTVKILATLSCISAVVLILM-- 126 Query: 149 GRTIPEIKPARKIKQVTKK 167 KI Q Sbjct: 127 ------GTLLTKISQFLGI 139 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 49/100 (49%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 ++ IG + RKD +Q K LG+ + +S +E G++IP+ Sbjct: 1 MSFEGGIFMEQEKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLD 60 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + Q+ + +++ + G+++++ K A+ N +++K+K Sbjct: 61 LCQLLEINVNELLTGEQIVMKDYKKIAEQNLIELRNQKEK 100 >gi|256024105|ref|ZP_05437970.1| Repressor protein C2 [Escherichia sp. 4_1_40B] Length = 208 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RIK +R+ +QKE+ + AV +E + + L + S D Sbjct: 1 METVGQRIKALRRVTGTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSID 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +I G + + + + + + R Sbjct: 61 YILYGAEFEGKLVTNMRRVPVISWVQAGQFTECR 94 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K++R+ G SQ E GK G+ + + +E+ P + K+ + +D+I +G Sbjct: 6 QRIKALRRVTGTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSIDYILYG 65 Query: 176 DE 177 E Sbjct: 66 AE 67 >gi|167767683|ref|ZP_02439736.1| hypothetical protein CLOSS21_02218 [Clostridium sp. SS2/1] gi|167710700|gb|EDS21279.1| hypothetical protein CLOSS21_02218 [Clostridium sp. SS2/1] Length = 120 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 7/96 (7%) Query: 21 ITPEIRQY-------WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 + E R++ + +VG R+K +RK TQ+++A + + ++ EN ++ Sbjct: 1 MRYEEREFITMYQIDYTNVGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNL 60 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 R Y +S D++ E + +D K + Sbjct: 61 RVLSYYAKLLNVSIDYLLRPESDENGEKDDVLNKEI 96 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 2/109 (1%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + ++D +G R+K++RK G +Q + L + + +SN E R ++ Sbjct: 2 RYEEREFITMYQIDYTNVGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLR 61 Query: 157 PARKIKQVTKKHLDWIYFG--DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ +D++ DE + + + +K D K Sbjct: 62 VLSYYAKLLNVSIDYLLRPESDENGEKDDVLNKEILRLLEKFSTDDKEK 110 >gi|19745754|ref|NP_606890.1| repressor protein [Streptococcus pyogenes MGAS8232] gi|139474145|ref|YP_001128861.1| phage repressor protein [Streptococcus pyogenes str. Manfredo] gi|306827718|ref|ZP_07460990.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] gi|19747895|gb|AAL97389.1| putative repressor protein [Streptococcus pyogenes MGAS8232] gi|134272392|emb|CAM30648.1| putative phage repressor protein [Streptococcus pyogenes str. Manfredo] gi|304430036|gb|EFM33073.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] Length = 254 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 34/67 (50%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ +G++IK++RK TQKE+AI N ++ + +E G + L N + Sbjct: 4 KELALYIGSKIKELRKNKGLTQKELAILVNMGDTTIANYEKGFRTPKKNTLFKLANALSV 63 Query: 86 SFDWIYD 92 + D ++ Sbjct: 64 TIDDLFP 70 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 37/62 (59%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+++K +RK+KG++Q E L+ M ++T++NYE+G P+ K+ +D Sbjct: 8 LYIGSKIKELRKNKGLTQKELAILVNMGDTTIANYEKGFRTPKKNTLFKLANALSVTIDD 67 Query: 172 IY 173 ++ Sbjct: 68 LF 69 >gi|319936560|ref|ZP_08010974.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] gi|319808358|gb|EFW04918.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] Length = 110 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 32/71 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +RK +Q+++A + +V+ +E I+ + + + +S D++ Sbjct: 5 EKLLQLRKERGLSQQQLAEQLDVSRQSVSKWELNESIPDIQNIVAMSELFHVSTDYLLKD 64 Query: 94 EVIDRRYEDVT 104 E+ + +D Sbjct: 65 EMEKNQADDNR 75 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 34/65 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK++G+SQ + + L + ++S +E +IP+I+ + ++ D+ Sbjct: 1 MKLNEKLLQLRKERGLSQQQLAEQLDVSRQSVSKWELNESIPDIQNIVAMSELFHVSTDY 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLKDE 65 >gi|75761153|ref|ZP_00741144.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904571|ref|ZP_04068647.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74491352|gb|EAO54577.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855052|gb|EEM99635.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 194 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++G IK+IRKA + + + A++ +ENG S + + D Sbjct: 2 QENIGKVIKEIRKAKGISAFVLGEMIGVSQQAISQYENGKRKISFEVLNNIAKALNVPMD 61 Query: 89 WIYD 92 + Sbjct: 62 TLLF 65 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K IRK KG+S G+++G+ +S YE G+ + I + +D + F Sbjct: 7 KVIKEIRKAKGISAFVLGEMIGVSQQAISQYENGKRKISFEVLNNIAKALNVPMDTLLFV 66 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + + + I K+ Sbjct: 67 NHEAIEQKIAERGVEALEKE 86 >gi|315037793|ref|YP_004031361.1| DNA-binding membrane protein [Lactobacillus amylovorus GRL 1112] gi|312275926|gb|ADQ58566.1| DNA-binding membrane protein [Lactobacillus amylovorus GRL 1112] Length = 157 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 46/88 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K +RK+ +SQ+++ K L + +SN++ R + +++ +I +V LD Sbjct: 1 MEFSDQIKQLRKENNLSQVQYAKKLYVTRQAVSNWKNNRNLLDLEMLIEINRVFHISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + GD+ + + K K ++K+K + Sbjct: 61 LILGDDNMNKMTQKLIKDTDENRKAKYN 88 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK +RK NN +Q + A AV+ ++N + + + + IS D + Sbjct: 2 EFSDQIKQLRKENNLSQVQYAKKLYVTRQAVSNWKNNRNLLDLEMLIEINRVFHISLDQL 61 Query: 91 YDGEVIDRR-YEDVTNKKRLDPYAIGARL 118 G+ + + + + A + Sbjct: 62 ILGDDNMNKMTQKLIKDTDENRKAKYNMI 90 >gi|257875354|ref|ZP_05655007.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257809520|gb|EEV38340.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 396 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I RK TQ+E+A+ N +++V+ +E G I L ++ S D + Sbjct: 5 IGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQSYPDITSLPLLAAYFDCSVDELL 64 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG + RK +G++Q E + + +++S +E G++ P+I + +D Sbjct: 3 LPIGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQSYPDITSLPLLAAYFDCSVDE 62 Query: 172 IYFGDEVIVPKSIKR 186 + D + K I+R Sbjct: 63 LLILDSQLSAKEIQR 77 >gi|166033247|ref|ZP_02236076.1| hypothetical protein DORFOR_02972 [Dorea formicigenerans ATCC 27755] gi|166027604|gb|EDR46361.1| hypothetical protein DORFOR_02972 [Dorea formicigenerans ATCC 27755] Length = 354 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 35/92 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K G I IRK TQ E+A + + A++ +E G+ I+ L IS Sbjct: 4 KQFGQFIAGIRKEKKMTQAELAEKIHVTDKAISRWERGLGFPDIQTLEPLAQVLGISVLE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E + T + + + L++ Sbjct: 64 LMRSEKKKPTGDMDTTETQYTQKEVAEMLQNA 95 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 39/87 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ G + IRK+K M+Q E + + + + +S +E+G P+I+ + QV Sbjct: 1 MEAKQFGQFIAGIRKEKKMTQAELAEKIHVTDKAISRWERGLGFPDIQTLEPLAQVLGIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKK 195 + + ++ + + + K+ Sbjct: 61 VLELMRSEKKKPTGDMDTTETQYTQKE 87 >gi|94266062|ref|ZP_01289781.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93453384|gb|EAT03812.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 109 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RI+ R+ +Q+E+A A+ +E G L E+ DW+ Sbjct: 2 NVGQRIRSRRQVLGLSQRELAARLGITFQAIQRWERGETFPRKETLPQLLAILEVGADWL 61 Query: 91 Y 91 Sbjct: 62 V 62 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 10/104 (9%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++S R+ G+SQ E LG+ + +E+G T P + ++ + + DW Sbjct: 1 MNVGQRIRSRRQVLGLSQRELAARLGITFQAIQRWERGETFPRKETLPQLLAILEVGADW 60 Query: 172 IYFGDEVIVP----------KSIKRAKGNQSSKKSKKDKKSSNP 205 + + P ++++ + Q + + K K P Sbjct: 61 LVGTPSLAGPDVSTIPPDVLEAVRDPRIQQIVRTAAKVLKQPAP 104 >gi|88856689|ref|ZP_01131345.1| putative regulatory protein [marine actinobacterium PHSC20C1] gi|88814150|gb|EAR24016.1| putative regulatory protein [marine actinobacterium PHSC20C1] Length = 195 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + + I + R++ R+ N T ++A +S ++ E+G S+ L Sbjct: 1 MSTSQRIETELGQIAPRLRRARQNKNLTLDDLAQATGISKSTLSRLESGQRKPSLELLLP 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + D I I + + A G L + + G Q Sbjct: 61 VVAALSVPLDQIVTSPRIADPRVAQKSTR-----ADGRMLTPLSQHLGKPQA 107 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ R++K ++ + + G+ STLS E G+ P ++ + LD I Sbjct: 18 LRRARQNKNLTLDDLAQATGISKSTLSRLESGQRKPSLELLLPVVAALSVPLDQIVTSPR 77 Query: 178 VIVPKSIKRA 187 + P+ +++ Sbjct: 78 IADPRVAQKS 87 >gi|296453887|ref|YP_003661030.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum JDM301] gi|296183318|gb|ADH00200.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum JDM301] Length = 161 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R+ TQ + A + A++ +E G SI + +E+ + Sbjct: 3 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAKLM 62 Query: 92 D 92 + Sbjct: 63 E 63 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +K +R+++G++Q +F L + LS +E+G P I R I + + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAK 60 Query: 172 IY 173 + Sbjct: 61 LM 62 >gi|300857312|ref|YP_003782296.1| putative membrane-associated gene regulator [Clostridium ljungdahlii DSM 13528] gi|300437427|gb|ADK17194.1| putative membrane-associated gene regulator with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 344 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I RK NN TQKE+A ESAV+ +E G+ I L + + +IS + Sbjct: 7 FGKFIIKKRKENNLTQKELAEKLYVSESAVSKWERGISYPDISLILSICDALKISEHELI 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 ++E +L Sbjct: 67 TASEDLHQHEIERQAMKL 84 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A G + RK+ ++Q E + L + S +S +E+G + P+I I K Sbjct: 3 DKAAFGKFIIKKRKENNLTQKELAEKLYVSESAVSKWERGISYPDISLILSICDALKISE 62 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + E + I+R K++ K K Sbjct: 63 HELITASEDLHQHEIERQ--AMKLKRAIKTYK 92 >gi|260428966|ref|ZP_05782943.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260419589|gb|EEX12842.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 205 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK++ + KE++ A+ +++ E + S S+R L +++ + + Sbjct: 25 LGLRLRALRKSHGLSLKELSARASLSVGSLSQIERDLSSPSVRTLNKLATSFDVPLSYFF 84 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR-LKS 120 D V + + A+ ++ Sbjct: 85 ADPAADEVDGIVIRRDTGHEMDVSAQGIRK 114 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-- 175 L+++RK G+S E + +LS E+ + P ++ K+ L + + Sbjct: 29 LRALRKSHGLSLKELSARASLSVGSLSQIERDLSSPSVRTLNKLATSFDVPLSYFFADPA 88 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + I+R G++ ++ +K Sbjct: 89 ADEVDGIVIRRDTGHEMDVSAQGIRKH 115 >gi|56808631|ref|ZP_00366358.1| COG1396: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] Length = 195 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I RK +Q+E+A +++ +EN I L L +++S + + Sbjct: 2 EIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLNQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++SN+E +T P+I + Q+ + L+ Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLNQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTK 86 >gi|210615280|ref|ZP_03290495.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787] gi|210150392|gb|EEA81401.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787] Length = 252 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 32/77 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G + ++RK TQK++A + V+ +E G ++ + + + I+ Sbjct: 6 NEKFGQFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVLGITVT 65 Query: 89 WIYDGEVIDRRYEDVTN 105 + GE + ++ Sbjct: 66 ELLQGEKLKENKTLNSD 82 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 39/79 (49%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +++ G L +RK+K M+Q + L + + T+S +E+G ++P + I V Sbjct: 1 MYQINNEKFGQFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVL 60 Query: 166 KKHLDWIYFGDEVIVPKSI 184 + + G+++ K++ Sbjct: 61 GITVTELLQGEKLKENKTL 79 >gi|228911365|ref|ZP_04075168.1| Prophage repressor [Bacillus thuringiensis IBL 200] gi|228848302|gb|EEM93153.1| Prophage repressor [Bacillus thuringiensis IBL 200] Length = 138 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 26/84 (30%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Y VG R+ RK TQ ++A N +E + + + Sbjct: 26 ERVVYMATVGERLIHFRKKRGLTQYDIAGYLNVARPTYTNWEANRAEPDLSTLIKISEYL 85 Query: 84 EISFDWIYDGEVIDRRYEDVTNKK 107 IS D + + + K Sbjct: 86 GISLDTLVGRKCDIDVQLEEIKTK 109 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ + +G RL RK +G++Q + L + T +N+E R P++ KI + Sbjct: 26 ERVVYMATVGERLIHFRKKRGLTQYDIAGYLNVARPTYTNWEANRAEPDLSTLIKISEYL 85 Query: 166 KKHLDWIY 173 LD + Sbjct: 86 GISLDTLV 93 >gi|170699355|ref|ZP_02890402.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170135727|gb|EDT04008.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 203 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +S S + VG +I+ +R T +++ A +S ++ E Sbjct: 1 MASSSASRRTPAAAAPQPSGVTPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIER 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIY 91 + +I A L N I+ D ++ Sbjct: 61 DKANPTIAVAWRLTNALGITLDELF 85 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|115359716|ref|YP_776854.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285004|gb|ABI90520.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] Length = 203 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +S S + VG +I+ +R T +++ A +S ++ E Sbjct: 1 MASSSASRRTPAAAAPQPSGVTPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIER 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIY 91 + +I A L N I+ D ++ Sbjct: 61 DKANPTIAVAWRLTNALGITLDELF 85 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|227545776|ref|ZP_03975825.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213892|gb|EEI81731.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 362 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N TQ+ +A+ A++ +E+ + L + + + + D + G Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 94 EVIDR 98 +V Sbjct: 65 DVSRP 69 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + A L+ +R + ++Q LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVLGD 65 >gi|269957018|ref|YP_003326807.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305699|gb|ACZ31249.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 190 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R++ R+A T ++A S ++ E ++ L L Y + D + Sbjct: 10 NVGPRLRAFRQALRLTLSDLAEQTGLTSSTISRLERSQIRPTLEQLLPLARVYGVPLDEL 69 Query: 91 Y 91 Sbjct: 70 V 70 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY---- 173 L++ R+ ++ + + G+ +ST+S E+ + P ++ + +V LD + Sbjct: 15 LRAFRQALRLTLSDLAEQTGLTSSTISRLERSQIRPTLEQLLPLARVYGVPLDELVAAPA 74 Query: 174 FGDEVIVPKSIKR 186 GD + + I+R Sbjct: 75 HGDPRVHLRPIRR 87 >gi|253574793|ref|ZP_04852133.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845839|gb|EES73847.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 127 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 10/108 (9%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RIK +R+ TQK++A A ++ +E + + + S D Sbjct: 10 MQTLGERIKYLRELRQLTQKDLASQAEISVVQLSRYETNDRKPDPEVLRNIVDALDTSAD 69 Query: 89 WIYDGEVIDRR----------YEDVTNKKRLDPYAIGARLKSIRKDKG 126 ++ + + + A LK+ R+ K Sbjct: 70 YLLGRTNDPSPAAEKGMSLSFFGGPEAYTADEIAMMEAALKAYREQKK 117 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + + +G R+K +R+ + ++Q + + LS YE P+ + R I Sbjct: 6 RGVTMQTLGERIKYLRELRQLTQKDLASQAEISVVQLSRYETNDRKPDPEVLRNIVDALD 65 Query: 167 KHLDWIYFGDEVIVPKSIK 185 D++ P + K Sbjct: 66 TSADYLLGRTNDPSPAAEK 84 >gi|23464934|ref|NP_695537.1| hypothetical protein BL0333 [Bifidobacterium longum NCC2705] gi|239622527|ref|ZP_04665558.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23325529|gb|AAN24173.1| hypothetical protein with helix turn helix motif [Bifidobacterium longum NCC2705] gi|239514524|gb|EEQ54391.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 298 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + A L+ +R + M Q + LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRANLQYLRAQRNMPQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVLGD 65 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N Q+++A+ A++ +E+ + L + + + + D + G Sbjct: 5 ANLQYLRAQRNMPQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 94 E 94 + Sbjct: 65 D 65 >gi|300174082|ref|YP_003773248.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888461|emb|CBL92429.1| Transcription regulator [Leuconostoc gasicomitatum LMG 18811] Length = 204 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K++R N TQ ++A ++ +EN I + L + Y IS D + Sbjct: 3 FGNHLKNVRLQKNLTQDQVAKDFFVTRQTISSWENEKTYPDITNLINLSDYYHISLDTLL 62 Query: 92 DGE 94 + Sbjct: 63 KED 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G LK++R K ++Q + K + T+S++E +T P+I + LD Sbjct: 1 MTFGNHLKNVRLQKNLTQDQVAKDFFVTRQTISSWENEKTYPDITNLINLSDYYHISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + ++ + I++ +QS K Sbjct: 61 LLK-EDAGLRDHIEKKDVSQSLK 82 >gi|291557516|emb|CBL34633.1| Helix-turn-helix [Eubacterium siraeum V10Sc8a] Length = 221 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 29/73 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 + +RK TQK++A ++ ++ +E G + + + + Y +S D++ Sbjct: 9 LSLLRKERGLTQKQVAADLGIAQALLSHYEKGKRKCGLEFLVKAADYYNVSTDYLLGRSP 68 Query: 96 IDRRYEDVTNKKR 108 + + Sbjct: 69 VSNGGIITESDIP 81 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK++G++Q + LG+ + LS+YE+G+ ++ K D++ Sbjct: 5 FPRILSLLRKERGLTQKQVAADLGIAQALLSHYEKGKRKCGLEFLVKAADYYNVSTDYLL 64 >gi|167749863|ref|ZP_02421990.1| hypothetical protein EUBSIR_00831 [Eubacterium siraeum DSM 15702] gi|167657175|gb|EDS01305.1| hypothetical protein EUBSIR_00831 [Eubacterium siraeum DSM 15702] gi|291531021|emb|CBK96606.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 221 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 29/73 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 + +RK TQK++A ++ ++ +E G + + + + Y +S D++ Sbjct: 9 LSLLRKERGLTQKQVAADLGIAQALLSHYEKGKRECGLEFLVKAADYYNVSTDYLLGRSP 68 Query: 96 IDRRYEDVTNKKR 108 + + Sbjct: 69 VSNGGIITESDIP 81 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK++G++Q + LG+ + LS+YE+G+ ++ K D++ Sbjct: 5 FPRILSLLRKERGLTQKQVAADLGIAQALLSHYEKGKRECGLEFLVKAADYYNVSTDYLL 64 >gi|255531529|ref|YP_003091901.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344513|gb|ACU03839.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 121 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G RIKD+R +N +Q +A N S + E G S + Y ++DW Sbjct: 8 KEIGERIKDLRTQHNLSQAFIANILNLSRSNYSQIELGNQYPSFNTLHEIARYYSKTYDW 67 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + G E+ + Sbjct: 68 LLHGTDTKAATENPAKIDLI 87 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ L IG R+K +R +SQ +L + S S E G P +I + Sbjct: 2 QEILSKKEIGERIKDLRTQHNLSQAFIANILNLSRSNYSQIELGNQYPSFNTLHEIARYY 61 Query: 166 KKHLDWIYFGDEV 178 K DW+ G + Sbjct: 62 SKTYDWLLHGTDT 74 >gi|210611267|ref|ZP_03288822.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] gi|210152031|gb|EEA83038.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] Length = 122 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K +G RIK R+ TQ+E A + ++ E G + L N E+S Sbjct: 13 IDKRIGKRIKQCRERLGLTQEEFAEKTGFTANYISTLERGASFPRCENLILLLNALEVSA 72 Query: 88 DWIYDG 93 D I+ Sbjct: 73 DAIFCD 78 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG R+K R+ G++Q EF + G + +S E+G + P + + + Sbjct: 12 MIDKRIGKRIKQCRERLGLTQEEFAEKTGFTANYISTLERGASFPRCENLILLLNALEVS 71 Query: 169 LDWIY 173 D I+ Sbjct: 72 ADAIF 76 >gi|329948033|ref|ZP_08294934.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523172|gb|EGF50273.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 62 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ +R+A TQ ++ ++N E G S+ A+ + +E + + I+ Sbjct: 5 VRSLREARGLTQAQLGAALGVSRQSINSIEKGKYDPSLPLAIAIARYFETAVEEIFH 61 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 34/58 (58%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++S+R+ +G++Q + G LG+ ++++ E+G+ P + A I + + ++ I+ Sbjct: 3 NDVRSLREARGLTQAQLGAALGVSRQSINSIEKGKYDPSLPLAIAIARYFETAVEEIF 60 >gi|313902610|ref|ZP_07836010.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313467176|gb|EFR62690.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 456 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 33/84 (39%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 E R + V +R+++ R+ +Q+E+A+ A A+ E G + S+ Sbjct: 39 EAGPEARGRARPGREGVASRLREARRRLGLSQRELAVRAGVSRQAIGAIEAGRMTPSLAV 98 Query: 76 ALYLRNEYEISFDWIYDGEVIDRR 99 A+ L + ++ + Sbjct: 99 AMRLARALGCRVEDLFRLDEPAPE 122 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RL+ R+ G+SQ E G+ + E GR P + A ++ + ++ ++ Sbjct: 57 SRLREARRRLGLSQRELAVRAGVSRQAIGAIEAGRMTPSLAVAMRLARALGCRVEDLFRL 116 Query: 176 DEVIVPKSIKRA 187 DE ++ A Sbjct: 117 DEPAPEMVVELA 128 >gi|257451797|ref|ZP_05617096.1| SOS-response transcriptional repressors [Fusobacterium sp. 3_1_5R] gi|317058353|ref|ZP_07922838.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] gi|313684029|gb|EFS20864.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] Length = 208 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 35/81 (43%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + +G +I +RK TQ++ + A ++ +E+G SI L + N + Sbjct: 2 KEKKLSETIGDKILKLRKETALTQEQFSKIAGVTPLSILKYESGERLISIETLLNIANYF 61 Query: 84 EISFDWIYDGEVIDRRYEDVT 104 +I + ++ + Sbjct: 62 KIPISYFLGENILKVDENMIK 82 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +RK+ ++Q +F K+ G+ ++ YE G + I+ I K + + + Sbjct: 14 ILKLRKETALTQEQFSKIAGVTPLSILKYESGERLISIETLLNIANYFKIPISYFLGENI 73 Query: 178 VIVPKS 183 + V ++ Sbjct: 74 LKVDEN 79 >gi|291287070|ref|YP_003503886.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884230|gb|ADD67930.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 196 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 7/110 (6%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ +G R++ IR T +++A ++ ++ EN + I + Sbjct: 1 MQDTEVKIGERVRKIRNERGLTLQDVANFTGFSKALISQIENNIVMPPINTLSKIAKVLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 + + ++ E+ + Y V + + G E K Sbjct: 61 VKMTYFFEEEINQKDYYVVKKDQ-------KKFIFREGVKHGYMYEELAK 103 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 30/76 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ IR ++G++ + G + +S E +P I KI +V + + + Sbjct: 10 ERVRKIRNERGLTLQDVANFTGFSKALISQIENNIVMPPINTLSKIAKVLNVKMTYFFEE 69 Query: 176 DEVIVPKSIKRAKGNQ 191 + + + + Sbjct: 70 EINQKDYYVVKKDQKK 85 >gi|16079688|ref|NP_390512.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221310566|ref|ZP_03592413.1| hypothetical protein Bsubs1_14416 [Bacillus subtilis subsp. subtilis str. 168] gi|221314890|ref|ZP_03596695.1| hypothetical protein BsubsN3_14337 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319812|ref|ZP_03601106.1| hypothetical protein BsubsJ_14253 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324091|ref|ZP_03605385.1| hypothetical protein BsubsS_14387 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312135|ref|YP_004204422.1| putative Xre family transcriptional regulator [Bacillus subtilis BSn5] gi|1176724|sp|P45902|YQAE_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yqaE gi|1217833|dbj|BAA06918.1| ORF7 [Bacillus subtilis] gi|1303723|dbj|BAA12379.1| YqaE [Bacillus subtilis] gi|2635080|emb|CAB14576.1| putative transcriptional regulator (Xre family); skin element [Bacillus subtilis subsp. subtilis str. 168] gi|320018409|gb|ADV93395.1| putative transcriptional regulator (Xre family); skin element [Bacillus subtilis BSn5] Length = 116 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K RK TQ+ MA A +E G + + + N ++S D++ G Sbjct: 4 ENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYLLKG 63 Query: 94 EVIDRRYEDVTNKKRLDP 111 E ++ ++D K DP Sbjct: 64 ESNEKVFQDEAKKVLNDP 81 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK RK K ++Q LG+ + YE G P+ K I + LD++ Sbjct: 1 MFSENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYL 60 Query: 173 YFGD 176 G+ Sbjct: 61 LKGE 64 >gi|329116090|ref|ZP_08244807.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906495|gb|EGE53409.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 284 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESA-VNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K +RK TQ E+A + + ++ +E G + + + IS D + Sbjct: 8 LGENLKKLRKLFGHTQDELAEILHFSKGNVISYYEKGERYPDQETLEKISDYFHISLDDL 67 Query: 91 YDGEVIDRRYEDVTNKKR 108 + E+ + +K Sbjct: 68 LNQELSEPGRLSNYFEKM 85 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNST-LSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +RK G +Q E ++L +S YE+G P+ + KI LD + Sbjct: 10 ENLKKLRKLFGHTQDELAEILHFSKGNVISYYEKGERYPDQETLEKISDYFHISLDDLL 68 >gi|297242658|ref|ZP_06926596.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD] gi|296888869|gb|EFH27603.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD] Length = 214 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 1/98 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ R TQ+E++ +AV +E I ++ + +S D++ Sbjct: 7 LGEKIRKARLEAGLTQEELSELLMVSRAAVAKWETNRGLPDIENLKFIASALSVSVDYLL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 D E + L+ Y R+ S +K K Q Sbjct: 67 D-ENNSVDFSITKKPINLNKYCFDGRVSSFKKSKIKEQ 103 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 35/71 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ R + G++Q E +LL + + ++ +E R +P+I+ + I +D++ Sbjct: 9 EKIRKARLEAGLTQEELSELLMVSRAAVAKWETNRGLPDIENLKFIASALSVSVDYLLDE 68 Query: 176 DEVIVPKSIKR 186 + + K+ Sbjct: 69 NNSVDFSITKK 79 >gi|289422954|ref|ZP_06424776.1| helix-turn-helix domain protein [Peptostreptococcus anaerobius 653-L] gi|289156634|gb|EFD05277.1| helix-turn-helix domain protein [Peptostreptococcus anaerobius 653-L] Length = 344 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 37/89 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK +Q+E+A N +V+ +E G+ + + + + ++ D++ Sbjct: 3 MSEKIMSLRKKMGWSQEELANELNVSRQSVSKWETGVSIPDMAKIVMMSEVFGVTTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 D E ++ + + I K Sbjct: 63 KEGANDEILELNSSSQEITSSDIKKDYKK 91 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ S+RK G SQ E L + ++S +E G +IP++ + +V D+ Sbjct: 1 MIMSEKIMSLRKKMGWSQEELANELNVSRQSVSKWETGVSIPDMAKIVMMSEVFGVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS--KKDKKSS 203 + E + ++ +Q S KKD K Sbjct: 61 LL--KEGANDEILELNSSSQEITSSDIKKDYKKE 92 >gi|256849871|ref|ZP_05555302.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256713360|gb|EEU28350.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 71 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G R+ RK TQ ++A + ++ +ENG+ S R + + + DW Sbjct: 4 KLLGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLSFPSKRRLSEIAHFLGVKVDW 63 Query: 90 IYDGEVID 97 + G D Sbjct: 64 LLTGFKED 71 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 34/67 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RL RK++ ++Q++ + +G +T+S YE G + P + +I Sbjct: 1 MQTKLLGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLSFPSKRRLSEIAHFLGVK 60 Query: 169 LDWIYFG 175 +DW+ G Sbjct: 61 VDWLLTG 67 >gi|116617253|ref|YP_817624.1| XRE-family DNA-binding domain-containing protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096100|gb|ABJ61251.1| XRE-family DNA-binding domain and ATPase component of ABC transporter [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 296 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 28/65 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R+ + +Q+ +A +V+ +E G I + L + + + +++ G+ Sbjct: 8 QLNMLRQKKSLSQEIIAQKLYVSRQSVSKWERGDAEPDIDKLIALADIFGVDLNYLLAGQ 67 Query: 95 VIDRR 99 Sbjct: 68 QSPEE 72 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +L +R+ K +SQ + L + ++S +E+G P+I + + L+++ Sbjct: 5 FSYQLNMLRQKKSLSQEIIAQKLYVSRQSVSKWERGDAEPDIDKLIALADIFGVDLNYLL 64 Query: 174 FGDEVIVPKSIKRAKGNQSSKK 195 G + +K + KK Sbjct: 65 AGQQSPEELLLKLTAVRKGFKK 86 >gi|313499113|gb|ADR60479.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 199 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI+ +RK T E+A + ++ E + SI + ++ W + Sbjct: 20 LGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWFF 79 Query: 92 DGEVIDRRYED 102 E + Sbjct: 80 ASEATTAPEDQ 90 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK +GM+ E + +S E+ + P I I + + W + + Sbjct: 24 IRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWFFASEA 83 Query: 178 VIVPKS 183 P+ Sbjct: 84 TTAPED 89 >gi|313898251|ref|ZP_07831789.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957015|gb|EFR38645.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 357 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G I +R TQ+ +A + +AV+ +E+G I L ++IS D + Sbjct: 2 DIGKNIVRLRNEKGYTQEMLASLLHVSSAAVSKWEHGSSCPDISTLPILARIFDISIDEL 61 Query: 91 YDGEVI 96 + E Sbjct: 62 LNFEKN 67 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 36/75 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG + +R +KG +Q LL + ++ +S +E G + P+I + ++ +D Sbjct: 1 MDIGKNIVRLRNEKGYTQEMLASLLHVSSAAVSKWEHGSSCPDISTLPILARIFDISIDE 60 Query: 172 IYFGDEVIVPKSIKR 186 + ++ + + + R Sbjct: 61 LLNFEKNLSEEQVNR 75 >gi|293401810|ref|ZP_06645951.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304762|gb|EFE46010.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 371 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +R+ N TQ ++A +S+V+ +E I + L + ++ D + Sbjct: 5 KLGENIAALRRKANITQDQLANWIGVSKSSVSKWETNTSYPDIIFLPQLATLFNVTVDEL 64 Query: 91 YDGEVI 96 E Sbjct: 65 MGYEPQ 70 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 37/76 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + P +G + ++R+ ++Q + +G+ S++S +E + P+I ++ + Sbjct: 1 MKPLKLGENIAALRRKANITQDQLANWIGVSKSSVSKWETNTSYPDIIFLPQLATLFNVT 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + ++I Sbjct: 61 VDELMGYEPQLTQEAI 76 >gi|160942173|ref|ZP_02089488.1| hypothetical protein CLOBOL_07061 [Clostridium bolteae ATCC BAA-613] gi|158435064|gb|EDP12831.1| hypothetical protein CLOBOL_07061 [Clostridium bolteae ATCC BAA-613] Length = 204 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 37/88 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +R N TQ+++A +A++ +E+G +I + + I+ D + Sbjct: 2 EFNEKLQQLRIGKNLTQQQLAEQLYVSRTAISKWESGKGYPNIESLKCISRFFSITIDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 E + E + + I + + Sbjct: 62 LSSEELITLAEAENHSNVNRIHNIISGI 89 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 33/69 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +R K ++Q + + L + + +S +E G+ P I+ + I + +D Sbjct: 1 MEFNEKLQQLRIGKNLTQQQLAEQLYVSRTAISKWESGKGYPNIESLKCISRFFSITIDE 60 Query: 172 IYFGDEVIV 180 + +E+I Sbjct: 61 LLSSEELIT 69 >gi|167033912|ref|YP_001669143.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166860400|gb|ABY98807.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 199 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI+ +RK T E+A + ++ E + SI + ++ W + Sbjct: 20 LGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWFF 79 Query: 92 DGEVIDRRYED 102 E + Sbjct: 80 ASEATTAPEDQ 90 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK +GM+ E + +S E+ + P I I + + W + + Sbjct: 24 IRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWFFASEA 83 Query: 178 VIVPKS 183 P+ Sbjct: 84 TTAPED 89 >gi|124486416|ref|YP_001031032.1| adenine deaminase [Methanocorpusculum labreanum Z] gi|124363957|gb|ABN07765.1| helix-turn-helix domain protein [Methanocorpusculum labreanum Z] Length = 347 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K RK + TQ+E+ + + ++ +E G S S + L + D+ + Sbjct: 2 FGERLKQARKLSGLTQEELGELVSVEKMTISKYEAGKISPSSSTLISLSRALHVDIDYFF 61 Query: 92 D 92 Sbjct: 62 R 62 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK RK G++Q E G+L+ + T+S YE G+ P + + +D+ Sbjct: 1 MFGERLKQARKLSGLTQEELGELVSVEKMTISKYEAGKISPSSSTLISLSRALHVDIDYF 60 Query: 173 YFGDEVIVPKSIKRAKGN 190 + V++ + + N Sbjct: 61 FRETSVVLASTPQFRLAN 78 >gi|26989587|ref|NP_745012.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24984467|gb|AAN68476.1|AE016480_3 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 199 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI+ +RK T E+A + ++ E + SI + ++ W + Sbjct: 20 LGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWFF 79 Query: 92 DGEVIDRRYED 102 E + Sbjct: 80 ASEATTAPEDQ 90 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK +GM+ E + +S E+ + P I I + + W + + Sbjct: 24 IRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWFFASEA 83 Query: 178 VIVPKS 183 P+ Sbjct: 84 TTAPED 89 >gi|148548035|ref|YP_001268137.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512093|gb|ABQ78953.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 199 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI+ +RK T E+A + ++ E + SI + ++ W + Sbjct: 20 LGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWFF 79 Query: 92 DGEVIDRRYED 102 E + Sbjct: 80 ASEATTAPEDQ 90 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK +GM+ E + +S E+ + P I I + + W + + Sbjct: 24 IRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWFFASEA 83 Query: 178 VIVPKS 183 P+ Sbjct: 84 TTAPED 89 >gi|331086629|ref|ZP_08335706.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409795|gb|EGG89230.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 193 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I+ +R + TQKE+A N + ++ +E I L +S ++ Sbjct: 6 GNTIRTLRIKHGITQKELAEKLNVSDKTISKWETEKGLPDISIVEELAKALHVSLTELFT 65 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGAR 117 G++ N KR+ Y Sbjct: 66 GDLKTNENVSG-NIKRIQFYVCPIC 89 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y G ++++R G++Q E + L + + T+S +E + +P+I ++ + L Sbjct: 3 YVTGNTIRTLRIKHGITQKELAEKLNVSDKTISKWETEKGLPDISIVEELAKALHVSLTE 62 Query: 172 IYFGD 176 ++ GD Sbjct: 63 LFTGD 67 >gi|255262604|ref|ZP_05341946.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255104939|gb|EET47613.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 225 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R++++RKA + T ++ A A S ++ ENG S + L IS + Sbjct: 44 NLGERVRELRKARSWTLEQAAQKAGLARSTLSKIENGQMSPTYDALKKLAVGLAISVPQL 103 Query: 91 YDGEVIDRRYEDV 103 + V + + Sbjct: 104 FTPPVKGQVNGRM 116 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 25/124 (20%) Query: 56 QLESAVNLFENG-----MCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 +++ + NG M S+ + + + E +GE D ++ Sbjct: 2 VSLASLARYGNGAIYERMTSSDPKSLIRIARE---------NGENADATPVNLG------ 46 Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 R++ +RK + + + + G+ STLS E G+ P +K+ + Sbjct: 47 -----ERVRELRKARSWTLEQAAQKAGLARSTLSKIENGQMSPTYDALKKLAVGLAISVP 101 Query: 171 WIYF 174 ++ Sbjct: 102 QLFT 105 >gi|126652726|ref|ZP_01724878.1| hypothetical protein BB14905_21323 [Bacillus sp. B14905] gi|126590415|gb|EAZ84534.1| hypothetical protein BB14905_21323 [Bacillus sp. B14905] Length = 134 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K RKA TQ+++A + ++ +ENG + S + L +++ D++ Sbjct: 6 RLKAARKAKKLTQEQLAGKLQTTKGTISNYENGHSTPSNEMLVLLSKILDVTTDYLLGVT 65 Query: 95 VIDRRYEDV 103 + Sbjct: 66 DNPTPVDYK 74 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK+ RK K ++Q + L T+SNYE G + P + + ++ D+ Sbjct: 1 MMFNHRLKAARKAKKLTQEQLAGKLQTTKGTISNYENGHSTPSNEMLVLLSKILDVTTDY 60 Query: 172 IYFGDEVIVPKSIKRA 187 + + P K A Sbjct: 61 LLGVTDNPTPVDYKLA 76 >gi|111021088|ref|YP_704060.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820618|gb|ABG95902.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 207 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P++ VG R+K +R+ T +++ S ++ E+G ++ L L Sbjct: 9 PDLDGVLDAVGPRLKALRQQRGATLAQLSESTGISVSTLSRLESGQRKPTLELMLLLARA 68 Query: 83 YEISFDWIYD 92 +++ D + D Sbjct: 69 HQLPLDELVD 78 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RLK++R+ +G + + + G+ STLS E G+ P ++ + + + LD + Sbjct: 17 AVGPRLKALRQQRGATLAQLSESTGISVSTLSRLESGQRKPTLELMLLLARAHQLPLDEL 76 Query: 173 Y----FGDEVIVPKSIKR 186 GD + + ++R Sbjct: 77 VDAPATGDPRVHLRPLER 94 >gi|326693522|ref|ZP_08230527.1| HTH-type transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 137 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK +R+ N TQKE+A+ + AV+ +E I + L + ++I+ D + Sbjct: 3 ISEKIKLLRQDNRLTQKELALKLHVSAQAVSNWELNKGFPDISNLIMLSDLFDITLDSLI 62 Query: 92 DGEVIDRRYEDVTN 105 + + Sbjct: 63 KEDADMKEQLLQDK 76 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 34/82 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K +R+D ++Q E L + +SN+E + P+I + + LD Sbjct: 1 MLISEKIKLLRQDNRLTQKELALKLHVSAQAVSNWELNKGFPDISNLIMLSDLFDITLDS 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + D + + ++ + Sbjct: 61 LIKEDADMKEQLLQDKASKNIN 82 >gi|312865953|ref|ZP_07726174.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098357|gb|EFQ56580.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 158 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +RK+++ TQ E A ++++ +ENG S S + ++ +S+ + Sbjct: 2 IGDNLKALRKSHHLTQPEFAAMIGISRNSLSRYENGTSSVSTELLDRICQKFNVSYIDLV 61 Query: 92 DGEV 95 E Sbjct: 62 GQEK 65 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG LK++RK ++Q EF ++G+ ++LS YE G + + +I Q + Sbjct: 1 MIGDNLKALRKSHHLTQPEFAAMIGISRNSLSRYENGTSSVSTELLDRICQKFNVSYIDL 60 Query: 173 YFGDEVIVP 181 ++++ P Sbjct: 61 VGQEKMLGP 69 >gi|281491219|ref|YP_003353199.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374960|gb|ADA64478.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 104 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K RK+ N TQKE+A N V +E G SI + + IS D++ Sbjct: 6 LGDKLKASRKSKNLTQKELADKINVKTRTVASYEQGSAYPSIEVLGKICDTLGISSDYLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 ++ + + Sbjct: 66 GISDKTPLEMGGLTDDQMQLFLQLISI 92 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G +LK+ RK K ++Q E + + T+++YEQG P I+ KI Sbjct: 1 MNLEYLGDKLKASRKSKNLTQKELADKINVKTRTVASYEQGSAYPSIEVLGKICDTLGIS 60 Query: 169 LDWIY 173 D++ Sbjct: 61 SDYLL 65 >gi|255280255|ref|ZP_05344810.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255269346|gb|EET62551.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 106 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK++R+ + TQ ++I + ++ +E G S + + L + + +S D++ Sbjct: 2 NRIKELREEKHITQIRLSIDLEVSQETISAYEKGKYYPSAKSLIKLADIFGVSIDYLL 59 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +R++K ++QI L + T+S YE+G+ P K K+ + +D++ Sbjct: 1 MNRIKELREEKHITQIRLSIDLEVSQETISAYEKGKYYPSAKSLIKLADIFGVSIDYLLG 60 Query: 175 GDEVIVPKSIKRAK 188 ++ + K Sbjct: 61 ISDIRMSVDATNLK 74 >gi|167757513|ref|ZP_02429640.1| hypothetical protein CLORAM_03063 [Clostridium ramosum DSM 1402] gi|237735075|ref|ZP_04565556.1| predicted protein [Mollicutes bacterium D7] gi|167702510|gb|EDS17089.1| hypothetical protein CLORAM_03063 [Clostridium ramosum DSM 1402] gi|229381851|gb|EEO31942.1| predicted protein [Coprobacillus sp. D7] Length = 153 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK +Q+E+A + ++ +E ++ A+ L Y IS D + Sbjct: 2 LGEKLMRLRKKQGYSQQEVADKLSVSRQTISNWECDQALPAVDKAMELAQLYNISLDDLM 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 + E+ + L Sbjct: 62 ENEIEIVSNNKTKDLHLLQYLIGKTC 87 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 37/74 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +L +RK +G SQ E L + T+SN+E + +P + A ++ Q+ LD + Sbjct: 1 MLGEKLMRLRKKQGYSQQEVADKLSVSRQTISNWECDQALPAVDKAMELAQLYNISLDDL 60 Query: 173 YFGDEVIVPKSIKR 186 + IV + + Sbjct: 61 MENEIEIVSNNKTK 74 >gi|160933079|ref|ZP_02080468.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753] gi|156868153|gb|EDO61525.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753] Length = 152 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 37/104 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + RK +Q+++A ++ +E G IR L Y++S D + Sbjct: 2 NLGNSLFHARKRRGLSQEDVAEKLGVSRQTISKWETGETIPDIRQCKRLAVLYQMSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 D ++ +++ K K + GK Sbjct: 62 IDFDINTAEIQEMIKKSGEKADEKINWTNEWGKKYPILLTYQGK 105 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G L RK +G+SQ + + LG+ T+S +E G TIP+I+ +++ + + LD Sbjct: 1 MNLGNSLFHARKRRGLSQEDVAEKLGVSRQTISKWETGETIPDIRQCKRLAVLYQMSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + D K + + + Sbjct: 61 LIDFDINTAEIQEMIKKSGEKADEK 85 >gi|153954271|ref|YP_001395036.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347152|gb|EDK33688.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 207 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 38/87 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R++++R+ NN TQ +A N ++ ++ +E G +I L + + +S D++ Sbjct: 2 NFAMRLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 I + + ++ + Sbjct: 62 IGVTNIKKVESNYLSRIPIFQITKNHP 88 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 6/94 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL+ +R++ ++Q +L + + +S YE GR P I+ + + +D+ Sbjct: 1 MNFAMRLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + +IK+ + N S+ ++P Sbjct: 61 LIG------VTNIKKVESNYLSRIPIFQITKNHP 88 >gi|21242245|ref|NP_641827.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21107669|gb|AAM36363.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 109 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 31/88 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++ R TQ E+ A+ + ++ FE+G S L +S D++ Sbjct: 7 ARLREARDRRGLTQAELGKEASLPSTTISHFESGSRKPSFDNLRRLTKVLGVSTDYLMGL 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + R A +K + Sbjct: 67 VDSPDDMAAASRIARHLGQATEDDIKML 94 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ARL+ R +G++Q E GK +P++T+S++E G P R++ +V D++ Sbjct: 5 FPARLREARDRRGLTQAELGKEASLPSTTISHFESGSRKPSFDNLRRLTKVLGVSTDYLM 64 Query: 174 ----FGDEVIVPKSIKRAKGNQSSKKSKK 198 D++ I R G + K Sbjct: 65 GLVDSPDDMAAASRIARHLGQATEDDIKM 93 >gi|325262061|ref|ZP_08128799.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324033515|gb|EGB94792.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 95 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 30/85 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +RK N TQ +A + + + +E G I + + + +E+S D + Sbjct: 7 IGRNIRRLRKERNMTQLHLAKILHLHRATLCSYEIGKRLPDIFILISIADAFEVSLDILV 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 D + Sbjct: 67 DRNTFITNPSAQVPGNYIPNPERRN 91 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 32/58 (55%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +RK++ M+Q+ K+L + +TL +YE G+ +P+I I + LD + Sbjct: 9 RNIRRLRKERNMTQLHLAKILHLHRATLCSYEIGKRLPDIFILISIADAFEVSLDILV 66 >gi|119491284|ref|ZP_01623338.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Lyngbya sp. PCC 8106] gi|119453448|gb|EAW34610.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Lyngbya sp. PCC 8106] Length = 377 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K IR +Q+++A ++ E+G + S R AL L + + Sbjct: 6 ELQNRLKQIRTRLGLSQQDLAKVVGVSRQTISGVESGQYAPSARIALRLAKALGCQMEDL 65 Query: 91 YDGEVI 96 + E Sbjct: 66 FWLEED 71 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 35/67 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK IR G+SQ + K++G+ T+S E G+ P + A ++ + ++ Sbjct: 5 NELQNRLKQIRTRLGLSQQDLAKVVGVSRQTISGVESGQYAPSARIALRLAKALGCQMED 64 Query: 172 IYFGDEV 178 +++ +E Sbjct: 65 LFWLEED 71 >gi|295106173|emb|CBL03716.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 384 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 3/87 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+ TQ+ +A V+ +E G + L L + + + D + Sbjct: 3 FADNLVYLRQHYGVTQEGLAEQLGVSRQTVSKWEAGTNYPEMDKLLALCDLFHTNLDDLM 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + + +R D + L Sbjct: 63 RG---SVHVANKGDTERYDHHMNRHSL 86 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L +R+ G++Q + LG+ T+S +E G PE+ + + +LD Sbjct: 1 MSFADNLVYLRQHYGVTQEGLAEQLGVSRQTVSKWEAGTNYPEMDKLLALCDLFHTNLDD 60 Query: 172 IYFG 175 + G Sbjct: 61 LMRG 64 >gi|257874773|ref|ZP_05654426.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257808939|gb|EEV37759.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 112 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 3/89 (3%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK++R N TQ+E+A A +E G L + + +S D + E Sbjct: 6 IKELRLKKNFTQQEIAERIGITRPAYTAYELGKREPDFSTLQALADLFGVSTDQLLGRES 65 Query: 96 IDRRYEDVTN---KKRLDPYAIGARLKSI 121 + + +D ++ I Sbjct: 66 SSDPFLSENSVIVASAVDDSISPEGIQEI 94 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +R K +Q E + +G+ + YE G+ P+ + + + D + Sbjct: 1 MFPCVIKELRLKKNFTQQEIAERIGITRPAYTAYELGKREPDFSTLQALADLFGVSTDQL 60 Query: 173 YFGDEVIVP 181 + P Sbjct: 61 LGRESSSDP 69 >gi|227511268|ref|ZP_03941317.1| possible XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227085519|gb|EEI20831.1| possible XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 75 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R TQ+E+++ N V+ +ENG I+ + L N +EIS D Sbjct: 5 DKVKVCRNKMGLTQEELSVKLNVSRKTVSAWENGRSYPDIQMLILLSNFFEISIDAFLRD 64 Query: 94 EVIDRRYEDVT 104 EV + Y Sbjct: 65 EVRVKIYTSFK 75 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K R G++Q E L + T+S +E GR+ P+I+ + + +D Sbjct: 1 MKFSDKVKVCRNKMGLTQEELSVKLNVSRKTVSAWENGRSYPDIQMLILLSNFFEISIDA 60 Query: 172 IYFGD 176 + Sbjct: 61 FLRDE 65 >gi|225019956|ref|ZP_03709148.1| hypothetical protein CLOSTMETH_03915 [Clostridium methylpentosum DSM 5476] gi|224947320|gb|EEG28529.1| hypothetical protein CLOSTMETH_03915 [Clostridium methylpentosum DSM 5476] Length = 122 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +IK++R + QKE+A S+++ +E + + L + +S D++ Sbjct: 3 FGDKIKNLRTDADLKQKEVAEILKVSRSSISSYEQNKNQPDLHAVIELAKLFNVSTDYLL 62 Query: 92 DGEVIDRRYEDV-----TNKKRLDPYAIGARLKSI 121 + D TN + + +K + Sbjct: 63 GLSEYKTSWVDETECISTNSDNVKIVELLNDIKKL 97 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 34/62 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++K++R D + Q E ++L + S++S+YEQ + P++ ++ ++ D+ Sbjct: 1 MRFGDKIKNLRTDADLKQKEVAEILKVSRSSISSYEQNKNQPDLHAVIELAKLFNVSTDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|327473016|gb|EGF18443.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 158 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQK++A + +E+G + + +S D++ Sbjct: 42 ERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDYLLGK 101 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + E ++ + L +K Sbjct: 102 TDNKKSDEINLSEFEILYRKTSKNLTERQK 131 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK +RK+ G++Q + + G+ +E G+ P + +K +D Sbjct: 37 NLMFPERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSID 96 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 ++ + I ++ +K+ K+ Sbjct: 97 YLLGKTDNKKSDEINLSEFEILYRKTSKN 125 >gi|332655107|ref|ZP_08420848.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332515967|gb|EGJ45576.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 316 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 2/93 (2%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I R+ TQKE+A + AV+ +E G+ + L ++ ++ + Sbjct: 15 GALIGQARREKGLTQKELAQALHVSPQAVSKWERGLNFPDLALLEALSDQLGLTVSELLS 74 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 G + E + + +R+ + Sbjct: 75 GTPGEPPQEKLLRDSLHLLLVQAG--RKLRRWR 105 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + +D GA + R++KG++Q E + L + +S +E+G P++ + Sbjct: 7 EGMDAQKTGALIGQARREKGLTQKELAQALHVSPQAVSKWERGLNFPDLALLEALSDQLG 66 Query: 167 KHLDWIYFGDEVIVPKS 183 + + G P+ Sbjct: 67 LTVSELLSGTPGEPPQE 83 >gi|229488922|ref|ZP_04382788.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229324426|gb|EEN90181.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 208 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 29/81 (35%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P I +G R+K IR N T ++ +S ++ E G S+ L + Sbjct: 18 GPHIDAAISQIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELLLPIAL 77 Query: 82 EYEISFDWIYDGEVIDRRYED 102 +++ D + + Sbjct: 78 AHQVPLDQLVAAPQVADPRIQ 98 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 101 EDVTNKKRLD--PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 N +D IGARLK IR + ++ + G+ STLS E G P ++ Sbjct: 13 TMNVNGPHIDAAISQIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELL 72 Query: 159 RKIKQVTKKHLDWIYFGDEVIVPK 182 I + LD + +V P+ Sbjct: 73 LPIALAHQVPLDQLVAAPQVADPR 96 >gi|226308038|ref|YP_002767998.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187155|dbj|BAH35259.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 195 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 29/81 (35%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P I +G R+K IR N T ++ +S ++ E G S+ L + Sbjct: 5 GPHIDAAISQIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELLLPIAL 64 Query: 82 EYEISFDWIYDGEVIDRRYED 102 +++ D + + Sbjct: 65 AHQVPLDQLVAAPQVADPRIQ 85 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 102 DVTNKKRLD--PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 N +D IGARLK IR + ++ + G+ STLS E G P ++ Sbjct: 1 MNVNGPHIDAAISQIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELLL 60 Query: 160 KIKQVTKKHLDWIYFGDEVIVPK 182 I + LD + +V P+ Sbjct: 61 PIALAHQVPLDQLVAAPQVADPR 83 >gi|255283309|ref|ZP_05347864.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255266163|gb|EET59368.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 224 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +++ +RK N +Q+++A V+ +ENG + + L Y ++ D I Sbjct: 2 NLEEKLQMLRKKNGYSQEQLADKIGIARQTVSKWENGQAIPELNGLILLSELYGVTIDRI 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + D + +D + + L Sbjct: 62 V--KDDDECNILLCKSADIDLNKVVSFL 87 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L+ +RK G SQ + +G+ T+S +E G+ IPE+ + ++ +D Sbjct: 1 MNLEEKLQMLRKKNGYSQEQLADKIGIARQTVSKWENGQAIPELNGLILLSELYGVTIDR 60 Query: 172 IYFGDEV 178 I D+ Sbjct: 61 IVKDDDE 67 >gi|237736543|ref|ZP_04567024.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229420405|gb|EEO35452.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 183 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R + +E+A S ++ E G S SI + ++ ++ Sbjct: 4 IGERIKKSRNDRGLSLRELATKVELSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLI 63 Query: 92 DGEVIDRRYEDVTNKKR 108 + E + E V R Sbjct: 64 EDEEEKQNTELVRKDNR 80 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IG R+K R D+G+S E + + S LS EQG+ P I+ +KI + Sbjct: 1 MSSIGERIKKSRNDRGLSLRELATKVELSASFLSQIEQGKASPSIENLKKIATSLDVKVS 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ +E + R + + + K + Sbjct: 61 YLIEDEEEKQNTELVRKDNRKYIESLDSNTKMA 93 >gi|302520734|ref|ZP_07273076.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302429629|gb|EFL01445.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 241 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + V R++ +R A + +E+A AN +S ++ ENG ++ + L Sbjct: 1 MTQDDDDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTN 105 + S D + + D + + Sbjct: 61 RALDTSLDQLVETTSDDVVTNPMID 85 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY- 173 R++++R +G S E + + STLS E G+ + + + LD + Sbjct: 13 RKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQLVE 72 Query: 174 -FGDEVIVPKSIKRAKGNQ 191 D+V+ I A+G Sbjct: 73 TTSDDVVTNPMIDGARGQM 91 >gi|226324192|ref|ZP_03799710.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758] gi|225207741|gb|EEG90095.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758] Length = 169 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK IRK+ +Q+E+AI N + V+ +ENG+ + L NE + + Sbjct: 4 ENIKRIRKSKGLSQEELAIKLNVVRQTVSKWENGLSVPDSSMLIILANELNTTVSELLGE 63 Query: 94 EVIDRRYEDVT 104 V + +D+ Sbjct: 64 PVAEPTTDDLK 74 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K IRK KG+SQ E L + T+S +E G ++P+ + + + Sbjct: 1 MLNENIKRIRKSKGLSQEELAIKLNVVRQTVSKWENGLSVPDSSMLIILANELNTTVSEL 60 Query: 173 YFGDEVIVPKS 183 G+ V P + Sbjct: 61 L-GEPVAEPTT 70 >gi|160894531|ref|ZP_02075307.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50] gi|156863842|gb|EDO57273.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50] Length = 118 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G R+++IRK + TQ E+ + ++ E G S+ + L N +++ D+ Sbjct: 10 EMFGQRLREIRKKHGMTQAELGEKTGLADKYISRIETGKADVSLDCFVKLVNAFDVPADY 69 Query: 90 IYDG 93 Sbjct: 70 YLQD 73 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + N +D G RL+ IRK GM+Q E G+ G+ + +S E G+ + K+ Sbjct: 1 MDNLAGIDKEMFGQRLREIRKKHGMTQAELGEKTGLADKYISRIETGKADVSLDCFVKLV 60 Query: 163 QVTKKHLDW 171 D+ Sbjct: 61 NAFDVPADY 69 >gi|67078040|ref|YP_245660.1| transcriptional regulator [Bacillus cereus E33L] gi|66970346|gb|AAY60322.1| transcriptional regulator [Bacillus cereus E33L] Length = 145 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+++K R++ + +Q+++A AV +E+ I + L YE++ D + Sbjct: 5 NLGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 G R D Sbjct: 65 IKGSEDAREELDKK 78 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 38/78 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G++LK R+ K SQ + + +G+ + +E ++ P+I + ++ + Sbjct: 1 MNNMNLGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVT 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + G E + K+ Sbjct: 61 IDELIKGSEDAREELDKK 78 >gi|317122090|ref|YP_004102093.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592070|gb|ADU51366.1| transcriptional regulator, XRE family [Thermaerobacter marianensis DSM 12885] Length = 216 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDW 89 +VG RI+D+R+ + +++A + ++ ++ EN S+ L + +S Sbjct: 2 EVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVILRIATALGVSLTE 61 Query: 90 IY 91 + Sbjct: 62 LL 63 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLD 170 +G R++ +R+ +G+S + + G+ + LS E P + +I L Sbjct: 1 MEVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVILRIATALGVSLT 60 Query: 171 WIY 173 + Sbjct: 61 ELL 63 >gi|161521857|ref|YP_001585284.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189351982|ref|YP_001947609.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160345907|gb|ABX18992.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189336004|dbj|BAG45073.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 203 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 33/100 (33%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +S S + VG +I+ +R T +++ A +S ++ E Sbjct: 1 MASSSGSRRTTAGAAPQPPAATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIER 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 + +I A L N I+ D ++ Sbjct: 61 DKANPTIAVAWRLTNALGITLDELFSQPKAPEAIRVDGPH 100 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELFS- 86 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 87 -QPKAPEAIR 95 >gi|170736907|ref|YP_001778167.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819095|gb|ACA93677.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 203 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ +R T +++ A +S ++ E + +I A L N I+ D ++ Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 92 DGEVIDRRYEDVTNK 106 Sbjct: 86 SQPKTPETIRVDGPH 100 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELFS- 86 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 87 -QPKTPETIR 95 >gi|323483371|ref|ZP_08088759.1| hypothetical protein HMPREF9474_00508 [Clostridium symbiosum WAL-14163] gi|323403225|gb|EGA95535.1| hypothetical protein HMPREF9474_00508 [Clostridium symbiosum WAL-14163] Length = 130 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 36/74 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ N KTQ++++ + + +E +R+ L L + Y +S D++ Sbjct: 4 LGERLRLLREKNGKTQEDISKVIGTTQQIYSRYETNKTELPVRHLLNLSSYYNVSTDYLL 63 Query: 92 DGEVIDRRYEDVTN 105 + + ++ Sbjct: 64 GRIDYPKIAPEFSS 77 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ +R+ G +Q + K++G S YE +T ++ + D++ Sbjct: 6 ERLRLLREKNGKTQEDISKVIGTTQQIYSRYETNKTELPVRHLLNLSSYYNVSTDYLL 63 >gi|296876651|ref|ZP_06900699.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] gi|296432153|gb|EFH17952.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] Length = 295 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K IRK +Q+ +A AV +E G I + + N + IS D + Sbjct: 3 FAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDELI 62 Query: 92 DGE 94 E Sbjct: 63 CNE 65 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LKSIRK GMSQ + +G+ ++ +E G IP+I+ I + +D Sbjct: 1 MTFAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDE 60 Query: 172 IYFGDEVIVPKS 183 + + + S Sbjct: 61 LICNERTSLKTS 72 >gi|229168069|ref|ZP_04295797.1| hypothetical protein bcere0007_30280 [Bacillus cereus AH621] gi|228615313|gb|EEK72410.1| hypothetical protein bcere0007_30280 [Bacillus cereus AH621] Length = 242 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+ +++V+ +E G I + L + + IS D + Sbjct: 6 IHKIIADKRKEKGITQEELVAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 ++ + Sbjct: 66 CYTPQMKQEDIKN 78 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIADKRKEKGITQEELVAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELICYTPQMKQEDIKN 78 >gi|225351585|ref|ZP_03742608.1| hypothetical protein BIFPSEUDO_03182 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157929|gb|EEG71212.1| hypothetical protein BIFPSEUDO_03182 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 153 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 17/147 (11%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENG---MCSTSIRYALYLRNEYEISFDWIY 91 R++D+R + +++A + + +FEN + + + A + + ++ Sbjct: 7 RLQDLRLKEGMSLEQLAELSGVDHDRLVMFENNPETIRNMHLDTARQIAKALHCNVLELH 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E + + L+ IR+ +G +Q E ++ G+P +S +E G Sbjct: 67 PDEGWRGG-----------IHCAESGLRDIRRTRGYTQNELSEMTGIPQPNISWFETGYR 115 Query: 152 IPE---IKPARKIKQVTKKHLDWIYFG 175 + AR++ + + Sbjct: 116 STSGMRLDTARRLSEALRCDPTDFLKE 142 Score = 43.0 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG---RTIPEIKPARKIKQVTKK 167 A RL+ +R +GMS + +L G+ + L +E + AR+I + Sbjct: 1 MEAQPMRLQDLRLKEGMSLEQLAELSGVDHDRLVMFENNPETIRNMHLDTARQIAKALHC 60 Query: 168 HLDWI 172 ++ + Sbjct: 61 NVLEL 65 >gi|167749663|ref|ZP_02421790.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702] gi|167657416|gb|EDS01546.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702] Length = 302 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RK + TQ+++A AV+ +ENG + + +++S D +Y Sbjct: 7 KQLQMLRKQSGITQEQLAAKLGVTAQAVSKWENG-SYPDGDLLPKIADIFDVSIDNLYGR 65 Query: 94 EVIDRRYEDV 103 +E Sbjct: 66 GEERCSFEQQ 75 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +L+ +RK G++Q + LG+ +S +E + P+ KI + +D + Sbjct: 4 FFSKQLQMLRKQSGITQEQLAAKLGVTAQAVSKWEN-GSYPDGDLLPKIADIFDVSIDNL 62 Query: 173 Y-FGDE 177 Y G+E Sbjct: 63 YGRGEE 68 >gi|110800265|ref|YP_696047.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110674912|gb|ABG83899.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 114 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K +RK + TQ ++A SA+ ++E + L N + +S D++ Sbjct: 2 FGNRLKTLRKEKDLTQAQLANILKTSASAIGMYEQNRRTPDTETLQTLSNYFNVSVDYLI 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 I E + K + Sbjct: 62 GKTEIRESAEQLLEDKSV 79 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK++RK+K ++Q + +L S + YEQ R P+ + + + +D++ Sbjct: 1 MFGNRLKTLRKEKDLTQAQLANILKTSASAIGMYEQNRRTPDTETLQTLSNYFNVSVDYL 60 Query: 173 YFGDEVIV 180 E+ Sbjct: 61 IGKTEIRE 68 >gi|297195428|ref|ZP_06912826.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152779|gb|EDY63104.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 206 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 L +T + + V RI+ +R A + +E+A +S ++ ENG ++ + Sbjct: 8 LPMTQDNGELDSLVRKRIRALRVAQGWSLEELAARGRLSQSTLSRIENGHRRLALDQLVT 67 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 L + S D + + D + + Sbjct: 68 LARALDTSLDQLVETATDDVVSNPMIDGAH 97 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++++R +G S E + STLS E G + + + LD + Sbjct: 22 RKRIRALRVAQGWSLEELAARGRLSQSTLSRIENGHRRLALDQLVTLARALDTSLDQLV 80 >gi|282851951|ref|ZP_06261311.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556960|gb|EFB62562.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 153 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +R+ +Q ++A AV+L+E G + + L + +E+S ++ Sbjct: 2 NRIKQLREEKGVSQSDVANAVGITRQAVSLYEQGKRAPKLEIWQKLADLFEVSVPYLQGL 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + L AI + Sbjct: 62 SEMSEQVYLIQSTDCLVDRAIQNAI 86 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 35/58 (60%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+K +R++KG+SQ + +G+ +S YEQG+ P+++ +K+ + + + ++ Sbjct: 1 MNRIKQLREEKGVSQSDVANAVGITRQAVSLYEQGKRAPKLEIWQKLADLFEVSVPYL 58 >gi|169334840|ref|ZP_02862033.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis DSM 17244] gi|169257578|gb|EDS71544.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis DSM 17244] Length = 132 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 35/86 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I +RK N TQ+E+A N + AV+ +E G+ I L + +I + + Sbjct: 4 EMGRLISSLRKEKNMTQQELADKLNITDKAVSKWERGLSYPDISLIPKLADILDIDPNKL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + D +N K Sbjct: 64 LGSSNNEISKTDKSNIKDTIMLVFKC 89 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + S+RK+K M+Q E L + + +S +E+G + P+I K+ + + + Sbjct: 9 ISSLRKEKNMTQQELADKLNITDKAVSKWERGLSYPDISLIPKLADILDIDPNKLLGSSN 68 Query: 178 VIVPKSIKR 186 + K+ K Sbjct: 69 NEISKTDKS 77 >gi|196035367|ref|ZP_03102772.1| transcriptional regulator SinR [Bacillus cereus W] gi|195992044|gb|EDX56007.1| transcriptional regulator SinR [Bacillus cereus W] Length = 107 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + R+ Q + Sbjct: 62 LHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREFREFTKWKQNQ 106 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|332798913|ref|YP_004460412.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696648|gb|AEE91105.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 184 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 35/88 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ T +E+A A S ++ ENG + SI + + Sbjct: 5 NIGKKLQLYREQKKITMRELAEKAGITPSMLSQIENGQVNPSINTLKMISIALNVPMFKF 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++Y + ++ + + Sbjct: 65 FITDDDTKKYIVRKDSRKTIGWPSEEDI 92 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +L+ R+ K ++ E + G+ S LS E G+ P I + I Sbjct: 1 MENANIGKKLQLYREQKKITMRELAEKAGITPSMLSQIENGQVNPSINTLKMISIALNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + + D+ +++ S++D Sbjct: 61 MFKFFITDDDTKKYIVRKDSRKTIGWPSEED 91 >gi|325685380|gb|EGD27486.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 122 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 37/78 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++D+R+ +Q+E+A+ + ++ +E G ++ + N + +S + I Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVSRNSIL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 G ++ ++ + + Sbjct: 66 AGLPVEMLVQEGQEDRGV 83 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG L+ +R+ +GMSQ E LG+ T+SN+E GR +P +K KI + Sbjct: 1 MEKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVS 60 Query: 169 LDWIYFG 175 + I G Sbjct: 61 RNSILAG 67 >gi|255316576|ref|ZP_05358159.1| putative regulatory protein [Clostridium difficile QCD-76w55] Length = 120 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RIK R TQ+ +A + S ++ E G S+ + + N I+ D Sbjct: 5 YKALGKRIKIARIKKGITQESIANEIDITPSHLSNVETGKTKVSLPTLIDIANALSINID 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +++ + K + ++ + Sbjct: 65 SLLCDNILNSKVVFEGEAKEVFDDCDEYEIRML 97 Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D A+G R+K R KG++Q + + S LSN E G+T + I Sbjct: 1 MEMDYKALGKRIKIARIKKGITQESIANEIDITPSHLSNVETGKTKVSLPTLIDIANALS 60 Query: 167 KHLDWIYFGD 176 ++D + + Sbjct: 61 INIDSLLCDN 70 >gi|333025545|ref|ZP_08453609.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332745397|gb|EGJ75838.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 209 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + V R++ +R A + +E+A AN +S ++ ENG ++ + L Sbjct: 1 MTQDDDDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTN 105 + S D + + D + + Sbjct: 61 RALDTSLDQLVETASDDVVTNPMID 85 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + + STLS E G+ + + + LD + Sbjct: 13 RKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQLVE 72 Query: 175 --GDEVIVPKSIKRAKGNQ 191 D+V+ I A+G Sbjct: 73 TASDDVVTNPMIDGARGQM 91 >gi|318061096|ref|ZP_07979817.1| putative transcriptional regulator [Streptomyces sp. SA3_actG] Length = 243 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + V R++ +R A + +E+A AN +S ++ ENG ++ + L Sbjct: 1 MTQDDDDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTN 105 + S D + + D + + Sbjct: 61 RALDTSLDQLVETASDDVVTNPMID 85 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + + STLS E G+ + + + LD + Sbjct: 13 RKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQLVE 72 Query: 175 --GDEVIVPKSIKRAKGNQ 191 D+V+ I A+G Sbjct: 73 TASDDVVTNPMIDGARGQM 91 >gi|164688807|ref|ZP_02212835.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM 16795] gi|164602283|gb|EDQ95748.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM 16795] Length = 364 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I R++ TQ E+A +S+V+ +EN + I L + IS D + Sbjct: 5 NIGKNITKFRRSKGITQDELASYIGVSKSSVSKWENSITYPDIMLLPQLATLFNISLDEL 64 Query: 91 YDGEVI 96 E Sbjct: 65 MGYEPQ 70 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 39/78 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + R+ KG++Q E +G+ S++S +E T P+I ++ + Sbjct: 1 MNEINIGKNITKFRRSKGITQDELASYIGVSKSSVSKWENSITYPDIMLLPQLATLFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 LD + + ++ + I++ Sbjct: 61 LDELMGYEPQLIKEDIQK 78 >gi|326774009|ref|ZP_08233291.1| transcriptional regulator [Actinomyces viscosus C505] gi|326636148|gb|EGE37052.1| transcriptional regulator [Actinomyces viscosus C505] Length = 146 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I + + ++RK +Q +G+ T++ +E P+I ++ V +D + Sbjct: 1 MINSNIATLRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCVRLAHVFDVSIDDL 60 Query: 173 YFGDEVIVPKSIKRAK 188 GD V + K Sbjct: 61 VNGDTSFVAMLDRPGK 76 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + I +RK + TQ+ +A + +E + I + L + +++S D + Sbjct: 2 INSNIATLRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCVRLAHVFDVSIDDLV 61 Query: 92 DGEV 95 +G+ Sbjct: 62 NGDT 65 >gi|221197606|ref|ZP_03570653.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2M] gi|221204279|ref|ZP_03577297.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2] gi|221176445|gb|EEE08874.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2] gi|221184160|gb|EEE16560.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2M] Length = 203 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 33/100 (33%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +S S + VG +I+ +R T +++ A +S ++ E Sbjct: 1 MASSSGSRRTAAGAAPQPPAATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIER 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 + +I A L N I+ D ++ Sbjct: 61 DKANPTIAVAWRLTNALGITLDELFSQPKAPETIRVDGPH 100 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELFS- 86 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 87 -QPKAPETIR 95 >gi|320120590|gb|EFE29126.2| GTP pyrophosphokinase [Filifactor alocis ATCC 35896] Length = 271 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I+ +R+ TQ+++A N AV+ +E + + L ++S I Sbjct: 2 NIGMNIRRLREERGFTQEKLAEKLNVSFQAVSAWEREEYKPDLDNLIKLTEILDVSLSAI 61 Query: 91 YDGEVIDRRYEDV 103 + + + DV Sbjct: 62 VEQQETRFQTSDV 74 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ +R+++G +Q + + L + +S +E+ P++ K+ ++ L Sbjct: 1 MNIGMNIRRLREERGFTQEKLAEKLNVSFQAVSAWEREEYKPDLDNLIKLTEILDVSLSA 60 Query: 172 IYFGDEV 178 I E Sbjct: 61 IVEQQET 67 >gi|310764970|gb|ADP09920.1| RstR1 [Erwinia sp. Ejp617] gi|310764977|gb|ADP09927.1| RstR1 [Erwinia sp. Ejp617] Length = 122 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + AR +RK G++Q + +G+ + + YE G T P + ++I D Sbjct: 12 WMSFSARFLQLRKQHGLTQPQMADKVGIHLTQVRRYESGETQPSLDILKRIAVTFSVSAD 71 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 W+ F + P+ + K + K+++KS Sbjct: 72 WLIFEEGEREPQDEMKLKFEAVKQMDKEEQKS 103 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 IT +W R +RK + TQ +MA + V +E+G S+ + Sbjct: 3 AITINQGTFWMSFSARFLQLRKQHGLTQPQMADKVGIHLTQVRRYESGETQPSLDILKRI 62 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVT 104 + +S DW+ E +++ Sbjct: 63 AVTFSVSADWLIFEEGEREPQDEMK 87 >gi|295108102|emb|CBL22055.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 174 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 40/95 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +++ +++ + IR+ N +Q++ A AV+ +E G+ +I + + ++ Sbjct: 35 KVKDSNQNIAKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKF 94 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +I D + + + ++ + D L Sbjct: 95 DIPVDEMLKSGYVVEKIDNNKTSFKKDRNYSIVFL 129 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 IR+D +SQ +F +++G+ +S +E G ++P I I + +D + Sbjct: 49 KIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFDIPVDEMLK----- 103 Query: 180 VPKSIKRAKGNQSSKKSKKDK 200 +++ N++S K ++ Sbjct: 104 SGYVVEKIDNNKTSFKKDRNY 124 >gi|78066472|ref|YP_369241.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77967217|gb|ABB08597.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 191 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R+ T E + A + ++ E G + SI + + ++ + Sbjct: 15 LGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLVRIAKALGVTMQYFI 74 Query: 92 D 92 D Sbjct: 75 D 75 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 32/71 (45%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 ++ L ++G +++++R+ ++ E + G+ LS E+GR P I +I Sbjct: 4 PPDESVLVAMSLGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLVRIA 63 Query: 163 QVTKKHLDWIY 173 + + + Sbjct: 64 KALGVTMQYFI 74 >gi|224283083|ref|ZP_03646405.1| Hypothetical transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140233|ref|ZP_07802426.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132743|gb|EFR50360.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 161 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R+ TQ + A + A++ +E G SI + +E+ + Sbjct: 3 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMPRLM 62 Query: 92 D 92 + Sbjct: 63 E 63 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +IG +K +R+++G++Q +F L + LS +E+G P I R I + + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPM 58 >gi|15964024|ref|NP_384377.1| hypothetical protein SMc00351 [Sinorhizobium meliloti 1021] gi|15073200|emb|CAC41708.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] Length = 197 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 33/81 (40%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ I + + R++++R A + T ++A + + ++ E G S + + L Sbjct: 5 IMENAIAPLEETMAMRLRELRMARDLTLDDLAGRSGVSRAMISRIERGEASPTAQLLAKL 64 Query: 80 RNEYEISFDWIYDGEVIDRRY 100 + + ++ E + Sbjct: 65 CSALGTTLSALFASERSEASP 85 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 32/93 (34%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + + N + RL+ +R + ++ + G+ + +S E+G P + Sbjct: 1 MQSPIMENAIAPLEETMAMRLRELRMARDLTLDDLAGRSGVSRAMISRIERGEASPTAQL 60 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGN 190 K+ L ++ + + A+ Sbjct: 61 LAKLCSALGTTLSALFASERSEASPLARHAEQR 93 >gi|314937188|ref|ZP_07844534.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] gi|313654699|gb|EFS18445.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] Length = 178 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K R A TQ E+A V+ +E G +I L + Y+IS D + Sbjct: 2 ISNKLKSARLAKELTQSEVAKKLYVTRQTVSRWEQGKTLPNIYVIQELSDLYDISLDELV 61 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I +LKS R K ++Q E K L + T+S +EQG+T+P I +++ + LD + Sbjct: 1 MISNKLKSARLAKELTQSEVAKKLYVTRQTVSRWEQGKTLPNIYVIQELSDLYDISLDEL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|75758326|ref|ZP_00738450.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494188|gb|EAO57280.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 145 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+++K R++ + +Q+++A AV +E+ I + L YE++ D + Sbjct: 5 NLGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 G R + +K + Sbjct: 65 IKGSEDAREELNKKDKDECEDDENEN 90 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 43/91 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G++LK R+ K SQ + + +G+ + +E ++ P+I + ++ + Sbjct: 1 MNNMNLGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 +D + G E + K+ K +++ D Sbjct: 61 IDELIKGSEDAREELNKKDKDECEDDENEND 91 >gi|331699234|ref|YP_004335473.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953923|gb|AEA27620.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 196 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R+ ++R+ + T ++ S ++ E+G ++ L + Y + D + Sbjct: 15 VGPRLAELRRERDLTLAALSRTTGISTSTLSRLESGHRRATLELLLPIARAYGVGLDDLV 74 Query: 92 DGEVIDRRYE 101 E Sbjct: 75 GAEPSVPDPR 84 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L +R+++ ++ + G+ STLS E G ++ I + LD + + Sbjct: 19 LAELRRERDLTLAALSRTTGISTSTLSRLESGHRRATLELLLPIARAYGVGLDDLVGAEP 78 Query: 178 VIVPKSIK 185 + ++ Sbjct: 79 SVPDPRVR 86 >gi|326791080|ref|YP_004308901.1| hypothetical protein Clole_1987 [Clostridium lentocellum DSM 5427] gi|326541844|gb|ADZ83703.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 194 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG I+ +R TQK++A N + V+ +E G+ I L +++ + Sbjct: 4 EKVGELIRSLRIECGLTQKQLADAMNISDKTVSKWERGLGCPDISLLPELSILLKVNIEK 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 I G++ N + Y Sbjct: 64 ILSGDLNPNE-LLGGNMRMTQFYVCSEC 90 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 38/68 (55%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G ++S+R + G++Q + + + + T+S +E+G P+I ++ + K + Sbjct: 1 MDCEKVGELIRSLRIECGLTQKQLADAMNISDKTVSKWERGLGCPDISLLPELSILLKVN 60 Query: 169 LDWIYFGD 176 ++ I GD Sbjct: 61 IEKILSGD 68 >gi|229100213|ref|ZP_04231113.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] gi|228683255|gb|EEL37233.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] Length = 114 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +RK+ + TQ E+A N +S + +E G I+ + + + +S D + Sbjct: 4 FGQTLKQLRKSRDLTQSELAEILNLSQSQIKNWETGRFQPDIQTLASIASFFNVSLDVLV 63 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK +RK + ++Q E ++L + S + N+E GR P+I+ I LD Sbjct: 1 MIIFGQTLKQLRKSRDLTQSELAEILNLSQSQIKNWETGRFQPDIQTLASIASFFNVSLD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + + I++ Sbjct: 61 VLVGFSNNFEDEPIQQ 76 >gi|331085319|ref|ZP_08334405.1| hypothetical protein HMPREF0987_00708 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408102|gb|EGG87592.1| hypothetical protein HMPREF0987_00708 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 150 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +K R++K ++Q + L + T+ +E+G P++ A+K+ +D Sbjct: 1 MALNDNIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALELDVSVDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + ++V K ++ G S + KDKK Sbjct: 61 LISDEDV---KDLQVNYGIWKS-ERIKDKKH 87 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK R+ N TQ+++A V +E G + A L E ++S D + Sbjct: 5 DNIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALELDVSVDELISD 64 Query: 94 EVIDRRYED 102 E + + Sbjct: 65 EDVKDLQVN 73 >gi|126700737|ref|YP_001089634.1| putative transcriptional regulator [Clostridium difficile 630] Length = 144 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +RK N TQ+E+A N ++ +E+G I + L Y + D + Sbjct: 5 INENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDICSCIKLAKLYNVKLDDLV 64 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K Sbjct: 65 NHSEEKTGIIVPPKGKFF 82 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LKS+RK +Q E + L + +++ +E G +IP+I K+ ++ LD Sbjct: 3 NMINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDICSCIKLAKLYNVKLDD 62 Query: 172 IYFGDEV 178 + E Sbjct: 63 LVNHSEE 69 >gi|95931307|ref|ZP_01314023.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95132638|gb|EAT14321.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 219 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++RKA T + +A + ++ EN S I L +++ Sbjct: 37 NIGAKIKELRKARKLTLQAVATETGFSPALISQIENNNVSPPIATLSKLARFFDVKISHF 96 Query: 91 Y 91 + Sbjct: 97 F 97 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y IGA++K +RK + ++ G + +S E P I K+ + + Sbjct: 36 YNIGAKIKELRKARKLTLQAVATETGFSPALISQIENNNVSPPIATLSKLARFFDVKISH 95 Query: 172 IY 173 + Sbjct: 96 FF 97 >gi|329910926|ref|ZP_08275406.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium IMCC9480] gi|327546048|gb|EGF31123.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium IMCC9480] Length = 191 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 TP + +VG ++ +R + T ++++ A +S ++ E + +I A L N Sbjct: 3 TPALPATPPEVGATLQRMRLERDLTLEDLSRAAGVSKSMLSQIEREKANPTIAVAWRLAN 62 Query: 82 EYEISFDWIYDGEVID 97 +S + E Sbjct: 63 ALGVSIAELLSTEARP 78 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A L+ +R ++ ++ + + G+ S LS E+ + P I A ++ + + Sbjct: 15 ATLQRMRLERDLTLEDLSRAAGVSKSMLSQIEREKANPTIAVAWRLANALGVSIAELLST 74 Query: 176 D 176 + Sbjct: 75 E 75 >gi|325569676|ref|ZP_08145723.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] gi|325157232|gb|EGC69397.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] Length = 396 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I RK TQ+E+A N +++V+ +E G I L ++ S D + Sbjct: 5 IGEEIARRRKHRGVTQQELAAFMNVSKASVSKWETGQTYPDITSLPLLAAYFDCSVDELL 64 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + RK +G++Q E + + +++S +E G+T P+I + +D + Sbjct: 7 EEIARRRKHRGVTQQELAAFMNVSKASVSKWETGQTYPDITSLPLLAAYFDCSVDELLIL 66 Query: 176 DEVIVPKSIKR 186 D + PK I+R Sbjct: 67 DSQLSPKEIQR 77 >gi|302671595|ref|YP_003831555.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396068|gb|ADL34973.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 370 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK RK+ N TQ+E+A AV+ +E+G I + L + + IS D + Sbjct: 7 ENIKKYRKSMNLTQEELAEAFGVTVGAVSKWESGANVPDILTLMQLADFFSISVDVLLGY 66 Query: 94 EVIDRRYEDVTNK 106 + + +D++++ Sbjct: 67 SMSSKNIKDISDR 79 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +K RK ++Q E + G+ +S +E G +P+I ++ +D Sbjct: 2 QIKLNENIKKYRKSMNLTQEELAEAFGVTVGAVSKWESGANVPDILTLMQLADFFSISVD 61 Query: 171 WIY 173 + Sbjct: 62 VLL 64 >gi|300811797|ref|ZP_07092268.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497213|gb|EFK32264.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 136 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++++D+RK N +QKE+A ++ V +ENG +I Y L Y++S D++ Sbjct: 5 SKLRDLRKKNGLSQKELAEKLMTTQAKVASWENGDSVPNISYIAKLAVLYDVSADYLLKD 64 Query: 94 EVIDRRYEDVT 104 + + Sbjct: 65 DKQEGHEPGEE 75 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 38/83 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++L+ +RK G+SQ E + L + ++++E G ++P I K+ + D+ Sbjct: 1 MMLPSKLRDLRKKNGLSQKELAEKLMTTQAKVASWENGDSVPNISYIAKLAVLYDVSADY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + D+ + + + + Sbjct: 61 LLKDDKQEGHEPGEEMDRPNTKR 83 >gi|315147042|gb|EFT91058.1| helix-turn-helix protein [Enterococcus faecalis TX4244] Length = 257 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R N+ TQ+++A + A++ +E G SI L L + Y +S D + G Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 Query: 96 I 96 Sbjct: 67 Y 67 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK+ R + +Q + + L + +S +E G++IP I + + +D Sbjct: 1 MLIQTILKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDE 60 Query: 172 IYFG 175 + G Sbjct: 61 LIQG 64 >gi|75761861|ref|ZP_00741789.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490644|gb|EAO53932.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK IR N +Q+E+A N SA++L+E S S + +S D++ Sbjct: 4 LGDRIKFIRTKKNISQQELADILNVNRSAISLYETNRKSPSRENTYKIATALGVSIDYLL 63 Query: 92 DGEVIDRRYEDVTNKK 107 + D + + Sbjct: 64 GLQTDPSFQTDNIHSE 79 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K IR K +SQ E +L + S +S YE R P + KI +D++ Sbjct: 8 IKFIRTKKNISQQELADILNVNRSAISLYETNRKSPSRENTYKIATALGVSIDYLL 63 >gi|285018770|ref|YP_003376481.1| transcriptional regulator transcription regulator protein [Xanthomonas albilineans GPE PC73] gi|283473988|emb|CBA16489.1| putative transcriptional regulator transcription regulator protein [Xanthomonas albilineans] Length = 115 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G R+++ RKA TQ+++ +S+++ +EN + S R LR + S D Sbjct: 1 MKSFGDRLREARKAAGLTQEQLGFSLGVTKSSISAWENDRETPSFRLLPMLRVVLKRSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGAR--LKSIRKD 124 + G V R ++ + L + L R Sbjct: 61 DLVCGHVPSARLQEASPDYALQARDPHEQALLTRYRNM 98 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + G RL+ RK G++Q + G LG+ S++S +E R P + ++ V K+ LD Sbjct: 1 MKSFGDRLREARKAAGLTQEQLGFSLGVTKSSISAWENDRETPSFRLLPMLRVVLKRSLD 60 Query: 171 WIYFG 175 + G Sbjct: 61 DLVCG 65 >gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] Length = 295 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K +RK +Q+++A AV +E G I + + ++IS D + Sbjct: 5 FAENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETGAGIPDIENIMAISMLFDISIDDLL 64 Query: 92 DGEVIDRRYEDVT 104 E ++ + Sbjct: 65 SNERDSKKVVETE 77 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K +RK GMSQ + + LG+ ++ +E G IP+I+ I + +D Sbjct: 3 MTFAENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETGAGIPDIENIMAISMLFDISIDD 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + +E K ++ +S + D+ Sbjct: 63 LLS-NERDSKKVVETEYLYESITEYDIDESK 92 >gi|319946827|ref|ZP_08021061.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] gi|319746875|gb|EFV99134.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] Length = 295 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K IRK +Q+ +A AV +E G I + + N + IS D + Sbjct: 3 FAENLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDELI 62 Query: 92 DGE 94 E Sbjct: 63 CNE 65 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LKSIRK GMSQ + +G+ ++ +E G IP+I+ I + +D Sbjct: 1 MTFAENLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDE 60 Query: 172 IYFGDEVIVPKS 183 + + + S Sbjct: 61 LICNERTSLKTS 72 >gi|317481961|ref|ZP_07940986.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916528|gb|EFV37925.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 362 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N TQ+ +A+ A++ +E+ + L + + + + D + G Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 94 E 94 + Sbjct: 65 D 65 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + A L+ +R + ++Q LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVLGD 65 >gi|296453479|ref|YP_003660622.1| transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182910|gb|ADG99791.1| Predicted transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] Length = 356 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N TQ+ +A+ A++ +E+ + L + + + + D + G Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 94 E 94 + Sbjct: 65 D 65 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + A L+ +R + ++Q LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVLGD 65 >gi|291517434|emb|CBK71050.1| Predicted transcriptional regulators [Bifidobacterium longum subsp. longum F8] Length = 356 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N TQ+ +A+ A++ +E+ + L + + + + D + G Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 94 E 94 + Sbjct: 65 D 65 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + A L+ +R + ++Q LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVLGD 65 >gi|228928376|ref|ZP_04091417.1| hypothetical protein bthur0010_30750 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946950|ref|ZP_04109247.1| hypothetical protein bthur0007_30810 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812682|gb|EEM59006.1| hypothetical protein bthur0007_30810 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831423|gb|EEM77019.1| hypothetical protein bthur0010_30750 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 374 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVT 104 + + + Sbjct: 65 ISYKPQMEQEDIKN 78 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+K ++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKN 78 >gi|291457121|ref|ZP_06596511.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] gi|291380956|gb|EFE88474.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] Length = 356 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N TQ+ +A+ A++ +E+ + L + + + + D + G Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 94 E 94 + Sbjct: 65 D 65 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + A L+ +R + ++Q LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVLGD 65 >gi|206561879|ref|YP_002232642.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037919|emb|CAR53864.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 203 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ +R T +++ A +S ++ E + +I A L N I+ D ++ Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 92 DGEVIDRRYEDVTNK 106 Sbjct: 86 SQPKAPETIRVDGPH 100 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELFS- 86 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 87 -QPKAPETIR 95 >gi|172034932|ref|YP_001801433.1| hypothetical protein cce_0015 [Cyanothece sp. ATCC 51142] gi|171696386|gb|ACB49367.1| unknown [Cyanothece sp. ATCC 51142] Length = 361 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 37/94 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G +++ R N +Q+++A N + ++L E G + S+ L Sbjct: 8 KDEILRQFGQKLQKWRLIQNLSQEQLAEIINVDRTYISLLERGKRNPSLICIKSLAEALN 67 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 I+ + + ++ +K +D + L Sbjct: 68 INLNELILIPEWQENLQNFCHKYNIDMENLADVL 101 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 31/64 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G +L+ R + +SQ + +++ + + +S E+G+ P + + + + +L+ + Sbjct: 15 FGQKLQKWRLIQNLSQEQLAEIINVDRTYISLLERGKRNPSLICIKSLAEALNINLNELI 74 Query: 174 FGDE 177 E Sbjct: 75 LIPE 78 >gi|53690271|ref|ZP_00121920.2| COG1396: Predicted transcriptional regulators [Bifidobacterium longum DJO10A] gi|189439959|ref|YP_001955040.1| Xre family transcriptional regulator [Bifidobacterium longum DJO10A] gi|189428394|gb|ACD98542.1| Xre-type transcriptional regulator [Bifidobacterium longum DJO10A] Length = 362 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N TQ+ +A+ A++ +E+ + L + + + + D + G Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 94 E 94 + Sbjct: 65 D 65 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + A L+ +R + ++Q LLG+ +S +E + PE+ I + LD Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVLGD 65 >gi|107027495|ref|YP_625006.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693793|ref|YP_839326.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|254249535|ref|ZP_04942855.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|105896869|gb|ABF80033.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651793|gb|ABK12433.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|124876036|gb|EAY66026.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 203 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ +R T +++ A +S ++ E + +I A L N I+ D ++ Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 92 DGEVIDRRYEDVTNK 106 Sbjct: 86 SQPKAPETIRVDGPH 100 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELFS- 86 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 87 -QPKAPETIR 95 >gi|134292501|ref|YP_001116237.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135658|gb|ABO56772.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 203 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ +R T +++ A +S ++ E + +I A L N I+ D ++ Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 92 DGEVIDRRYEDVTNK 106 Sbjct: 86 SQPKAPETIRVDGPH 100 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELFS- 86 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 87 -QPKAPETIR 95 >gi|318605629|emb|CBY27127.1| transcriptional regulator yidN, Cro/CI family [Yersinia enterocolitica subsp. palearctica Y11] Length = 188 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + +G ++K++R+ + + A ++ + E G S ++ + + Sbjct: 1 MKELTRHIGNQLKNVRRERGWSLSQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLN 60 Query: 85 ISFDWIYD 92 +SF + Sbjct: 61 VSFSQFLE 68 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +LK++R+++G S + + G+ + L E+G + P + KI Sbjct: 7 HIGNQLKNVRRERGWSLSQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQF 66 Query: 173 Y 173 Sbjct: 67 L 67 >gi|300690045|ref|YP_003751040.1| transcription regulator protein (modular protein) [Ralstonia solanacearum PSI07] gi|299077105|emb|CBJ49726.1| putative transcription regulator protein (modular protein) [Ralstonia solanacearum PSI07] Length = 209 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 1/104 (0%) Query: 14 LQEYTLIITPEIRQ-YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 +QEY T + + + R++++R A T +A S ++L E G S + Sbjct: 1 MQEYAEPSTADTDAGVNERIARRVRELRAARGYTLDVLATRCGVSRSMISLIERGAASPT 60 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 L +S ++ GE + + + + + Sbjct: 61 AAVLDKLAAGLGVSLASLFGGEREGVPAQPLMRRAQQAQWRDPE 104 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 31/84 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+G P K+ L ++ G Sbjct: 22 RRVRELRAARGYTLDVLATRCGVSRSMISLIERGAASPTAAVLDKLAAGLGVSLASLFGG 81 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + VP + Q+ + + Sbjct: 82 EREGVPAQPLMRRAQQAQWRDPES 105 >gi|154496755|ref|ZP_02035451.1| hypothetical protein BACCAP_01048 [Bacteroides capillosus ATCC 29799] gi|150274007|gb|EDN01107.1| hypothetical protein BACCAP_01048 [Bacteroides capillosus ATCC 29799] Length = 82 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +K +R+ TQ EMA + E G + + +L + + ++ D+ Sbjct: 11 EKFSANLKYLRQKKGLTQGEMAKLLGVTTNHYQKIEYGKVNIPVLTLCFLADYFGVTTDY 70 Query: 90 IYDGEVI 96 + E Sbjct: 71 LLGREEK 77 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 K ++ A LK +R+ KG++Q E KLLG+ + E G+ + + Sbjct: 3 QEVKSMNLEKFSANLKYLRQKKGLTQGEMAKLLGVTTNHYQKIEYGKVNIPVLTLCFLAD 62 Query: 164 VTKKHLDWIYFGDE 177 D++ +E Sbjct: 63 YFGVTTDYLLGREE 76 >gi|289549615|ref|YP_003470519.1| putativetranscriptional regulator [Staphylococcus lugdunensis HKU09-01] gi|289179147|gb|ADC86392.1| putativetranscriptional regulator [Staphylococcus lugdunensis HKU09-01] Length = 368 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + IK R TQ ++A + + ++ +ENG I+ L + +S D Sbjct: 1 MIKINKVIKAQRTKLGLTQDKLAAYLDITKPTISKWENGSLMPDIQLLPKLAKLFNMSVD 60 Query: 89 WIYDGEV 95 + D + Sbjct: 61 ELLDYQD 67 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +K+ R G++Q + L + T+S +E G +P+I+ K+ ++ +D Sbjct: 1 MIKINKVIKAQRTKLGLTQDKLAAYLDITKPTISKWENGSLMPDIQLLPKLAKLFNMSVD 60 Query: 171 WIYFGDEVIVPKS 183 + +V+ + Sbjct: 61 ELLDYQDVLTKED 73 >gi|251794968|ref|YP_003009699.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542594|gb|ACS99612.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 272 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 31/84 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + I RK TQ+E+A AV+ +EN + + L E+S D Sbjct: 3 EKLARSIAIYRKERGFTQEELATKLGISFQAVSKWENALTMPDLSLLPELCRTLEVSIDK 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYA 113 + D+ + + + Y Sbjct: 63 LLGYVSQDKTITIYEEEYKTENYY 86 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 28/56 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RK++G +Q E LG+ +S +E T+P++ ++ + + +D + Sbjct: 9 IAIYRKERGFTQEELATKLGISFQAVSKWENALTMPDLSLLPELCRTLEVSIDKLL 64 >gi|229087336|ref|ZP_04219477.1| hypothetical protein bcere0022_39060 [Bacillus cereus Rock3-44] gi|228695973|gb|EEL48817.1| hypothetical protein bcere0022_39060 [Bacillus cereus Rock3-44] Length = 185 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 32/82 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G +IK +R T K+++ N S ++ E S ++ L +S + Sbjct: 3 ENIGNKIKALRLEKRMTLKQVSEKTNLSISFISQVERSKSSITLESLKKLSEALHVSPSY 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDP 111 + E +++ + Sbjct: 63 FFAAEQKSNTNIIRRGQQQEEH 84 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 35/77 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++R +K M+ + + + S +S E+ ++ ++ +K+ + + + Sbjct: 7 NKIKALRLEKRMTLKQVSEKTNLSISFISQVERSKSSITLESLKKLSEALHVSPSYFFAA 66 Query: 176 DEVIVPKSIKRAKGNQS 192 ++ I+R + + Sbjct: 67 EQKSNTNIIRRGQQQEE 83 >gi|257789927|ref|YP_003180533.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257473824|gb|ACV54144.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 197 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G++IK R +Q ++A V+ +EN + L L ++++ D + Sbjct: 2 ELGSQIKRHRTDRGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 G+V + + K++ Sbjct: 62 IKGDVEAMKKAIANDYKKM 80 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 39/73 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G+++K R D+G+SQ + + + T+S++E +T P+++ + + +D Sbjct: 1 MELGSQIKRHRTDRGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDE 60 Query: 172 IYFGDEVIVPKSI 184 + GD + K+I Sbjct: 61 LIKGDVEAMKKAI 73 >gi|284991477|ref|YP_003410031.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064722|gb|ADB75660.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 195 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R +T +++ S ++ E+G ++ L L + + D + Sbjct: 14 VGPRLRALRVRRGRTLAQLSEETGISVSTLSRLESGQRRPTLELLLPLARSHRVPLDELV 73 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 36/74 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R +G + + + G+ STLS E G+ P ++ + + + LD + Sbjct: 13 AVGPRLRALRVRRGRTLAQLSEETGISVSTLSRLESGQRRPTLELLLPLARSHRVPLDEL 72 Query: 173 YFGDEVIVPKSIKR 186 E P+ R Sbjct: 73 VGAPETGDPRVHPR 86 >gi|221210520|ref|ZP_03583500.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia multivorans CGD1] gi|221169476|gb|EEE01943.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia multivorans CGD1] Length = 203 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 33/100 (33%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +S S + VG +I+ +R T +++ A +S ++ E Sbjct: 1 MASSSGSRRTAAGAAPQPPAATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIER 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 + +I A L N I+ D ++ Sbjct: 61 DKANPTIAVAWRLTNALGITLDELFSQPKAPEAIRVDGPH 100 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELFS- 86 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 87 -QPKAPEAIR 95 >gi|160947469|ref|ZP_02094636.1| hypothetical protein PEPMIC_01403 [Parvimonas micra ATCC 33270] gi|158446603|gb|EDP23598.1| hypothetical protein PEPMIC_01403 [Parvimonas micra ATCC 33270] Length = 200 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K V R+K +R N KTQKE A + +++ +ENG + +I + + ++ ++S D Sbjct: 3 NKTVSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCKVSLD 62 Query: 89 WIYDGEVIDRRYEDVTNKK-RLDPYAIGARL 118 W+ + + + A+ + Sbjct: 63 WLAGRSDYTFALSSMRDFVLFMYELAMKKEI 93 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + RLK +R +Q EF + LG+P ++S YE G+ P I I K Sbjct: 1 MNNKTVSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCKVS 60 Query: 169 LDWI 172 LDW+ Sbjct: 61 LDWL 64 >gi|332798162|ref|YP_004459661.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695897|gb|AEE90354.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 123 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI++ R+ +++E A + + E G S+ + + N +S D++ Sbjct: 8 IGKRIREEREKLGLSREEFAEIIGLSDYYIGQLERGERQMSMPTLIKVANCLHVSLDYLV 67 Query: 92 DG 93 G Sbjct: 68 LG 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D AIG R++ R+ G+S+ EF +++G+ + + E+G + K+ Sbjct: 1 MEIDNDAIGKRIREEREKLGLSREEFAEIIGLSDYYIGQLERGERQMSMPTLIKVANCLH 60 Query: 167 KHLDWIYFG 175 LD++ G Sbjct: 61 VSLDYLVLG 69 >gi|262046886|ref|ZP_06019846.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|260572868|gb|EEX29428.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 74 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K G R+ RK TQ ++A + ++ +ENG+ S R + + + DW Sbjct: 7 KLFGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLSFPSKRRLSEIAHFLGVKVDW 66 Query: 90 IYDGEVID 97 + G D Sbjct: 67 LLTGFKED 74 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + G RL RK++ ++Q++ + +G +T+S YE G + P + +I Sbjct: 1 MMTMQAKLFGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLSFPSKRRLSEIAHFL 60 Query: 166 KKHLDWIYFG 175 +DW+ G Sbjct: 61 GVKVDWLLTG 70 >gi|239623815|ref|ZP_04666846.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521846|gb|EEQ61712.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 186 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I+ +R+A T A S + E G + +I + N Y++SF + Sbjct: 8 EVGRNIRRLREAKKLTLDGAAAATGVSRSMLAQIEKGDVNPTISVLWKIANGYKVSFTSL 67 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + + D + + Sbjct: 68 VETGMEDAAVIRAGDITPI 86 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +G ++ +R+ K ++ G+ S L+ E+G P I KI K Sbjct: 6 NLEVGRNIRRLREAKKLTLDGAAAATGVSRSMLAQIEKGDVNPTISVLWKIANGYKVS 63 >gi|229150033|ref|ZP_04278258.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|228633471|gb|EEK90075.1| Transcriptional regulator, MerR [Bacillus cereus m1550] Length = 181 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A AN S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|218233568|ref|YP_002366514.1| DNA-binding protein [Bacillus cereus B4264] gi|218161525|gb|ACK61517.1| DNA-binding protein [Bacillus cereus B4264] Length = 181 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A AN S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|167754531|ref|ZP_02426658.1| hypothetical protein CLORAM_00033 [Clostridium ramosum DSM 1402] gi|237733830|ref|ZP_04564311.1| transcriptional regulator [Mollicutes bacterium D7] gi|167705363|gb|EDS19942.1| hypothetical protein CLORAM_00033 [Clostridium ramosum DSM 1402] gi|229383168|gb|EEO33259.1| transcriptional regulator [Coprobacillus sp. D7] Length = 135 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK R TQ+ +A ++ +EN I + L + Y+IS D + Sbjct: 2 EIAKKIKTARIKVELTQEHVADELQVSRQTISNWENAKTYPDIISIIKLSDLYQISLDEL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G+ + + + Sbjct: 62 LKGDDKMIEHLNESTN 77 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 39/84 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K+ R ++Q L + T+SN+E +T P+I K+ + + LD Sbjct: 1 MEIAKKIKTARIKVELTQEHVADELQVSRQTISNWENAKTYPDIISIIKLSDLYQISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + GD+ ++ + S+KK Sbjct: 61 LLKGDDKMIEHLNESTNIVSSNKK 84 >gi|312901966|ref|ZP_07761228.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311290902|gb|EFQ69458.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 69 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I+ IR+ N+ TQ++MA N ++ + +E G + + + + +++S D++ D Sbjct: 4 KNIRSIREDNDVTQQQMAELLNVSQNTYSQYETGKIEWTASTLIKVADYFDVSVDYLLDR 63 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++SIR+D ++Q + +LL + +T S YE G+ K+ +D++ Sbjct: 1 MKYKNIRSIREDNDVTQQQMAELLNVSQNTYSQYETGKIEWTASTLIKVADYFDVSVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|183601133|ref|ZP_02962626.1| hypothetical protein PROSTU_04762 [Providencia stuartii ATCC 25827] gi|188019477|gb|EDU57517.1| hypothetical protein PROSTU_04762 [Providencia stuartii ATCC 25827] Length = 131 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + K +G I +RK + T K++A N + ++ +E G+C+ +I + + N ++S Sbjct: 20 FTKAIGKEIHKLRKERSMTGKDLAKLVNVSQQQISRYECGVCNITIDTLIVILNALDVSL 79 Query: 88 DWIYD 92 ++ Sbjct: 80 TDFFN 84 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 31/83 (37%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + + + + + AIG + +RK++ M+ + KL+ + +S YE G Sbjct: 1 MRVDAVQMPKNKLDDSRTVFTKAIGKEIHKLRKERSMTGKDLAKLVNVSQQQISRYECGV 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 I I L + Sbjct: 61 CNITIDTLIVILNALDVSLTDFF 83 >gi|160932614|ref|ZP_02080004.1| hypothetical protein CLOLEP_01456 [Clostridium leptum DSM 753] gi|156868573|gb|EDO61945.1| hypothetical protein CLOLEP_01456 [Clostridium leptum DSM 753] Length = 86 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 36/77 (46%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 + II ++ + + RI+D+R+ + +Q +A N +S + +E+G Sbjct: 6 KSQYAIIALDMINTVRKMYQRIRDLREDRDLSQAALAKLLNVSQSTYSRYESGYLDIPSN 65 Query: 75 YALYLRNEYEISFDWIY 91 + L Y++S D+I Sbjct: 66 ILIALARFYQVSVDYIL 82 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D+ +SQ KLL + ST S YE G + + + +D+I Sbjct: 23 MYQRIRDLREDRDLSQAALAKLLNVSQSTYSRYESGYLDIPSNILIALARFYQVSVDYIL 82 >gi|323703828|ref|ZP_08115464.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323531185|gb|EGB21088.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 133 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Query: 32 VGTRIKDIRKANN--KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 R+K +R+ + QKE+A A+ ++E G L + + +S D+ Sbjct: 3 FADRLKHLREKHKPKIYQKELADAIGVSRQAITMWETGQRIPDTVTLKKLADFFGVSTDY 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + I D + L+ A + Sbjct: 63 LLGRTDIPNNVNDEPTPQELEKVLREANI 91 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 112 YAIGARLKSIRKDKG--MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 RLK +R+ + Q E +G+ ++ +E G+ IP+ +K+ Sbjct: 1 MTFADRLKHLREKHKPKIYQKELADAIGVSRQAITMWETGQRIPDTVTLKKLADFFGVST 60 Query: 170 DWIYFGDEV 178 D++ ++ Sbjct: 61 DYLLGRTDI 69 >gi|266619410|ref|ZP_06112345.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288869037|gb|EFD01336.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 177 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++K++R TQ+E+A A + ++ E + S SI + + S Sbjct: 2 DIGAKLKELRILKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTSIGEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ T+ + +K I Sbjct: 62 FNETPEEQIVFGKTDYFEKHDQELKNEIKWI 92 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA+LK +R KG++Q E + +S E+ T P I I Q + Sbjct: 1 MDIGAKLKELRILKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTSIGE 60 Query: 172 IYF---GDEVIVPKSIKRAKGNQSSKKSKK 198 + ++++ K+ K +Q K K Sbjct: 61 FFNETPEEQIVFGKTDYFEKHDQELKNEIK 90 >gi|126697864|ref|YP_001086761.1| DNA-binding protein [Clostridium difficile 630] gi|255099463|ref|ZP_05328440.1| DNA-binding protein [Clostridium difficile QCD-63q42] gi|255305320|ref|ZP_05349492.1| DNA-binding protein [Clostridium difficile ATCC 43255] gi|115249301|emb|CAJ67114.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 364 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + RK TQ E+A +++V+ +E G I + L + I+ D + Sbjct: 5 NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYPDITFLPQLATYFNITVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E + + +L Sbjct: 65 ICYEPQMMKEDINKLYNKL 83 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 39/78 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ I L RK+KG++Q E +G+ +++S +E G++ P+I ++ Sbjct: 1 MNELNIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYPDITFLPQLATYFNIT 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + ++ + I + Sbjct: 61 VDELICYEPQMMKEDINK 78 >gi|293402557|ref|ZP_06646692.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304071|gb|EFE45325.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 173 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK IRKA +Q+E+AI N + ++ +ENG+ + + +E + G Sbjct: 4 ENIKAIRKAKGLSQEELAIKLNVVRQTISKWENGLSVPDSDMLISISEIFETPVSALL-G 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 E I + D I +L ++ + Sbjct: 63 ESIIEQEADDVKVIAEKLEVINLQLAKRKEIRRKILHWV 101 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +E G ++P+ I ++ + + + Sbjct: 1 MLNENIKAIRKAKGLSQEELAIKLNVVRQTISKWENGLSVPDSDMLISISEIFETPVSAL 60 Query: 173 YFGDEVIVPK 182 G+ +I + Sbjct: 61 L-GESIIEQE 69 >gi|83593475|ref|YP_427227.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576389|gb|ABC22940.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 196 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 28/81 (34%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G RI + RK +Q +A +S + +E G + L +S Sbjct: 1 MIEIGKRIAEARKDQGMSQYALAKLLGVNQSTIAYYERGRNTPKPWIVEDLARILNVSAA 60 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 ++ G V + L Sbjct: 61 FLLYGRERTDPLVPVVGRVGL 81 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+ RKD+GMSQ KLLG+ ST++ YE+GR P+ + ++ Sbjct: 1 MIEIGKRIAEARKDQGMSQYALAKLLGVNQSTIAYYERGRNTPKPWIVEDLARILNVSAA 60 Query: 171 WIYFGDEVIVP 181 ++ +G E P Sbjct: 61 FLLYGRERTDP 71 >gi|330816861|ref|YP_004360566.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] gi|327369254|gb|AEA60610.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] Length = 207 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + E + + G R++ +R A T ++++ + + ++ E G S +I A + Sbjct: 18 SSEADELSEAFGARVRKLRAAAGMTLEQLSERSGVSRAMLSKVERGEKSPTIGIATRIAQ 77 Query: 82 EYEISFDWIYDG 93 S + G Sbjct: 78 SLRTSLTELVGG 89 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A GAR++ +R GM+ + + G+ + LS E+G P I A +I Q + L + Sbjct: 27 AFGARVRKLRAAAGMTLEQLSERSGVSRAMLSKVERGEKSPTIGIATRIAQSLRTSLTEL 86 Query: 173 YFG 175 G Sbjct: 87 VGG 89 >gi|296159361|ref|ZP_06842186.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295890345|gb|EFG70138.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 191 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E+A A + ++ E G + SI + + ++ + Sbjct: 15 IGSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLVGIARALGVTVQYFV 74 Query: 92 DGEVIDRRYEDVTNKKRL 109 D D+ ++ K Sbjct: 75 DTPTEDKSVRRGSDLKYF 92 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 N K +IG++++++R+ + E K G+ LS E+G P I I Sbjct: 4 PLNNKAHVAVSIGSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLVGIA 63 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKR 186 + + + D KS++R Sbjct: 64 RALGVTVQYFV--DTPTEDKSVRR 85 >gi|119503754|ref|ZP_01625836.1| transcriptional regulator, Cro/CI family protein [marine gamma proteobacterium HTCC2080] gi|119460262|gb|EAW41355.1| transcriptional regulator, Cro/CI family protein [marine gamma proteobacterium HTCC2080] Length = 66 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R ++ TQ ++A N VN E G S+ A + +++ D I+ Sbjct: 3 NRLKVLRAEHDWTQADLAAQLNVTRQTVNAIEKGKYDPSLPLAFKIAGVFQMPIDHIFFP 62 Query: 94 EV 95 + Sbjct: 63 KD 64 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R + +Q + L + T++ E+G+ P + A KI V + +D I+ Sbjct: 1 MKNRLKVLRAEHDWTQADLAAQLNVTRQTVNAIEKGKYDPSLPLAFKIAGVFQMPIDHIF 60 Query: 174 FGDE 177 F + Sbjct: 61 FPKD 64 >gi|166032956|ref|ZP_02235785.1| hypothetical protein DORFOR_02677 [Dorea formicigenerans ATCC 27755] gi|166027313|gb|EDR46070.1| hypothetical protein DORFOR_02677 [Dorea formicigenerans ATCC 27755] Length = 104 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RIK R+A N TQ+E+A N + V++ E G+ T + + + N ++S D Sbjct: 4 KAVGQRIKAAREAKNLTQEELAGLVNLSPTHVSVIERGLKVTKLDTFIAIANALDVSADT 63 Query: 90 IY 91 + Sbjct: 64 LL 65 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A+G R+K+ R+ K ++Q E L+ + + +S E+G + ++ I Sbjct: 1 MDLKAVGQRIKAAREAKNLTQEELAGLVNLSPTHVSVIERGLKVTKLDTFIAIANALDVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 D + + K K+ Sbjct: 61 ADTLLIDVVTHSVSGVTNELSEMIEKLPKE 90 >gi|255654357|ref|ZP_05399766.1| DNA-binding protein [Clostridium difficile QCD-23m63] Length = 364 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + RK TQ E+A +++V+ +E G I + L + I+ D + Sbjct: 5 NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYPDITFLPQLATYFNITVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E + + +L Sbjct: 65 ICYEPQMMKEDINKLYNKL 83 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 39/78 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ I L RK+KG++Q E +G+ +++S +E G++ P+I ++ Sbjct: 1 MNELNIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYPDITFLPQLATYFNIT 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + ++ + I + Sbjct: 61 VDELICYEPQMMKEDINK 78 >gi|223986671|ref|ZP_03636661.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM 12042] gi|223961357|gb|EEF65879.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM 12042] Length = 124 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R N TQ+ +A ++ E G S+ + + N ++ D + Sbjct: 14 LGQRVRRARMKLNLTQEVLAEKVGVSIPTISHIETGTNKVSLELFVSIANALNVTPDELI 73 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 V + + + A K + Sbjct: 74 MDSVPKLTAFYMKDIREELKDCSPAEYKIL 103 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 K +D +G R++ R ++Q + +G+ T+S+ E G ++ Sbjct: 1 MSKEKKDHVDYCLLGQRVRRARMKLNLTQEVLAEKVGVSIPTISHIETGTNKVSLELFVS 60 Query: 161 IKQVTKKHLDWIYFG 175 I D + Sbjct: 61 IANALNVTPDELIMD 75 >gi|154499861|ref|ZP_02037899.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] gi|150271459|gb|EDM98716.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] Length = 409 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI +RK +Q+ + AV+ +E + + + + IS + Sbjct: 3 LGQRIAALRKEKGLSQEGLGELVGVSRQAVSKWEADKTVPDVNNCIAMSRVFGISLAGLL 62 Query: 92 DGEV 95 + E Sbjct: 63 EVEE 66 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+ ++RK+KG+SQ G+L+G+ +S +E +T+P++ + +V L Sbjct: 1 MTLGQRIAALRKEKGLSQEGLGELVGVSRQAVSKWEADKTVPDVNNCIAMSRVFGISLAG 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + +E + +R G Q S++ Sbjct: 61 LLEVEESLGD-GAERTGGEQLSEE 83 >gi|313635253|gb|EFS01552.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria seeligeri FSL N1-067] gi|313639938|gb|EFS04624.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria seeligeri FSL S4-171] Length = 111 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K VG +IK R+ Q+ +A + ++ +ENG + L + Sbjct: 2 ELNKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKR 61 Query: 87 FDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSI 121 D + + E +D L+ I Sbjct: 62 LDDFFPERNLPPADERGMTIAAHIDDDVTDEELRDI 97 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K R+++G++Q + L T+S YE G ++ ++ K LD Sbjct: 4 NKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLD 63 Query: 171 WIY 173 + Sbjct: 64 DFF 66 >gi|229172472|ref|ZP_04300031.1| Transcriptional regulator, MerR [Bacillus cereus MM3] gi|228610943|gb|EEK68206.1| Transcriptional regulator, MerR [Bacillus cereus MM3] Length = 181 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELATMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E + G+ S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELATMAGITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|210634365|ref|ZP_03298091.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM 13279] gi|210158844|gb|EEA89815.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM 13279] Length = 169 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 + ++ + + K R+ D+R+ +Q+++A A++ +E + Sbjct: 28 TKEAFVMDDAMDEATK-FADRLLDLRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVD 86 Query: 75 YALYLRNEYEISFDWIYDG 93 + L Y +S D+I G Sbjct: 87 NVVKLSQIYRVSTDFILTG 105 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+ G SQ + LLG+ +S +E + PE+ K+ Q+ + D+I G Sbjct: 51 LRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVDNVVKLSQIYRVSTDFILTG 105 >gi|154482433|ref|ZP_02024881.1| hypothetical protein EUBVEN_00100 [Eubacterium ventriosum ATCC 27560] gi|149736710|gb|EDM52596.1| hypothetical protein EUBVEN_00100 [Eubacterium ventriosum ATCC 27560] Length = 195 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 34/85 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK R +Q ++A ++ +EN + + L ++ S D + Sbjct: 2 ELGNQIKKYRSELQLSQDQLAEHIYVSRQTISNWENEKSYPDVNSLVLLSEVFKTSIDNL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 G++ + + + + + Y Sbjct: 62 IKGDIENMKEKINEQEIKKFNYYGN 86 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 39/80 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K R + +SQ + + + + T+SN+E ++ P++ + +V K +D Sbjct: 1 MELGNQIKKYRSELQLSQDQLAEHIYVSRQTISNWENEKSYPDVNSLVLLSEVFKTSIDN 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + GD + + I + + Sbjct: 61 LIKGDIENMKEKINEQEIKK 80 >gi|163940975|ref|YP_001645859.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863172|gb|ABY44231.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 242 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 6 IHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFVPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 66 CYTLQMEQEDIKN 78 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MREIHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFVPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELICYTLQMEQEDIKN 78 >gi|206560147|ref|YP_002230911.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036188|emb|CAR52084.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 240 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 31/84 (36%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 S L+ + E +G +I+ +R+ T E A A + ++ E G Sbjct: 41 VSTARLRTSMTVPPDESVLVAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGR 100 Query: 69 CSTSIRYALYLRNEYEISFDWIYD 92 + SI + + ++ + D Sbjct: 101 ATPSITSLVRIAQALGVTMQYFID 124 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 18/132 (13%) Query: 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 TQ++ A G + + A + + + +S + Sbjct: 10 RAGCTQRQCAAGYHVVPVASSH------RP------RIADIKPVSTARL------RTSMT 51 Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 ++ L ++G +++++R+ ++ E + G+ LS E+GR P I +I Sbjct: 52 VPPDESVLVAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRI 111 Query: 162 KQVTKKHLDWIY 173 Q + + Sbjct: 112 AQALGVTMQYFI 123 >gi|160940853|ref|ZP_02088194.1| hypothetical protein CLOBOL_05746 [Clostridium bolteae ATCC BAA-613] gi|158436227|gb|EDP13994.1| hypothetical protein CLOBOL_05746 [Clostridium bolteae ATCC BAA-613] Length = 113 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+K +R+ +Q ++A N SA+ +E+ S Y S D+I Sbjct: 19 DLGLRLKGLREKYKLSQTQVATRLNLSRSAIANYESNTSFPSTDVVTKFALLYHTSTDYI 78 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 E D + D + Sbjct: 79 LGLENRTTITLDGLTPSQEDDLLKVIDI 106 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + + +D Y +G RLK +R+ +SQ + L + S ++NYE + P K Sbjct: 7 KTMERGTVMDAYDLGLRLKGLREKYKLSQTQVATRLNLSRSAIANYESNTSFPSTDVVTK 66 Query: 161 IKQVTKKHLDWIY 173 + D+I Sbjct: 67 FALLYHTSTDYIL 79 >gi|83590834|ref|YP_430843.1| MerR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573748|gb|ABC20300.1| transcriptional regulator, MerR family [Moorella thermoacetica ATCC 39073] Length = 178 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 27/78 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R+ + K++A S ++ E + SI + +I + Sbjct: 2 LGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYFL 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 +K L Sbjct: 62 LNPEDHSPVVRKDQRKVL 79 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +++ +R+++GMS + + G+ +S LS E+ P I RKI + + + Sbjct: 1 MLGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYF 60 Query: 173 YFGDEVIVPKSIKRAK 188 E P K + Sbjct: 61 LLNPEDHSPVVRKDQR 76 >gi|154247940|ref|YP_001418898.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162025|gb|ABS69241.1| putative transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 72 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +R+ TQ+++ + + ++ E G + ++ L +S + Sbjct: 4 RKLVGRNFARLRQEKGLTQEDVEARSGFSQQYISGLERGRRNPTVITLYELAQALGVSHE 63 Query: 89 WIYDGEVID 97 + + D Sbjct: 64 ELVRADGRD 72 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +R++KG++Q + G +S E+GR P + ++ Q + + D Sbjct: 13 RLRQEKGLTQEDVEARSGFSQQYISGLERGRRNPTVITLYELAQALGVSHEELVRAD 69 >gi|325660971|ref|ZP_08149598.1| hypothetical protein HMPREF0490_00330 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472478|gb|EGC75689.1| hypothetical protein HMPREF0490_00330 [Lachnospiraceae bacterium 4_1_37FAA] Length = 181 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + + IK R+ N TQ+++A V +E G + A L E Sbjct: 26 EREVWSMALNDNIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALEL 85 Query: 84 EISFDWIYDGEVIDRRYED 102 ++S D + E + + Sbjct: 86 DVSVDELISDEDVKDLQVN 104 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 +I N++ + A+ +K R++K ++Q + L + T+ +E+ Sbjct: 10 YILALLFWILS-LYDENEREVWSMALNDNIKKFREEKNLTQQQLADKLYVSRQTVCRWEK 68 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 G P++ A+K+ +D + ++V K ++ G S + KDKK Sbjct: 69 GSRCPDLITAKKLALELDVSVDELISDEDV---KDLQVNYGIWKS-ERIKDKKH 118 >gi|319650747|ref|ZP_08004886.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] gi|317397604|gb|EFV78303.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] Length = 196 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ RK T E+A +S V+ E G S+ L +++ + + Sbjct: 15 IGGKIRSKRKTLQLTVDEVAERIGLSQSMVSQIERGKAKPSLDTLWKLSILFDVPLSFFF 74 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +G E ++ L + + + Sbjct: 75 EGIEKQSVIVSRREEQEILKMRHKNVQYRVL 105 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + N+ L IG +++S RK ++ E + +G+ S +S E+G+ P + K+ Sbjct: 3 NDINQSELPVEIIGGKIRSKRKTLQLTVDEVAERIGLSQSMVSQIERGKAKPSLDTLWKL 62 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + L + + G E + R + + K K+ Sbjct: 63 SILFDVPLSFFFEGIEKQ-SVIVSRREEQEILKMRHKN 99 >gi|227873927|ref|ZP_03992147.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840233|gb|EEJ50643.1| transcriptional regulator [Oribacterium sinus F0268] Length = 191 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +IK R + TQ +A ++ +EN I + L E+S D + Sbjct: 4 GKKIKYYRNEKSLTQDNLAERIFVSRQTISNWENDKSYPDINSIILLSEVLEVSVDNLIK 63 Query: 93 GE-VIDRRYEDVTNKKRLDPYAIGARL 118 G+ + + KR+ Y++ + Sbjct: 64 GDVEQMKLEINSEEVKRMKLYSLMMLI 90 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++K R +K ++Q + + + T+SN+E ++ P+I + +V + +D Sbjct: 1 MEPGKKIKYYRNEKSLTQDNLAERIFVSRQTISNWENDKSYPDINSIILLSEVLEVSVDN 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + GD + I + + Sbjct: 61 LIKGDVEQMKLEINSEEVKR 80 >gi|255283010|ref|ZP_05347565.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens DSM 14469] gi|255266549|gb|EET59754.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens DSM 14469] Length = 185 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E +G RI+D+R TQ+E+A A + ++ E G S S+ L L Sbjct: 2 EQDYVNAQIGKRIRDLRNRKGLTQQELADRAELTKGFISQLERGQVSPSVVTLLDLIECL 61 Query: 84 EISFDWIYDGEVIDRRYEDVT 104 + + V ++ Sbjct: 62 GTTASDFFKEAVEEQIVFTEE 82 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R KG++Q E + +S E+G+ P + + + + Sbjct: 12 KRIRDLRNRKGLTQQELADRAELTKGFISQLERGQVSPSVVTLLDLIECLGTTASDFF-- 69 Query: 176 DEVIVPKSIKRAKG 189 E + + + +G Sbjct: 70 KEAVEEQIVFTEEG 83 >gi|168184227|ref|ZP_02618891.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672749|gb|EDT84710.1| transcriptional regulator [Clostridium botulinum Bf] Length = 136 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK+ N TQ+E+ S V ++E S + + + +S D++ Sbjct: 2 LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFLL 61 Query: 92 DGEVI 96 + E Sbjct: 62 NTEEK 66 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK K ++Q E GK +G+ S + YE P + KI + D++ +E Sbjct: 6 IKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFLLNTEE 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 + K + K++ + Sbjct: 66 KLDMTLDSVKKIHNMVKEATEKY 88 >gi|94989193|ref|YP_597294.1| transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94993080|ref|YP_601179.1| transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|94542701|gb|ABF32750.1| transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94546588|gb|ABF36635.1| Transcriptional regulator [Streptococcus pyogenes MGAS2096] Length = 198 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + ++G +I RK +Q+++A +++ +EN I L L +++S Sbjct: 2 IFMEIGQQIIRYRKQQALSQEKLAEKVYVSYQSISNWENDKTYPDIHSLLLLSQIFQVSL 61 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D + G++ +Y K+ Sbjct: 62 DQLIKGDIEKMKYTITQVDKK 82 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 42/89 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG ++ RK + +SQ + + + + ++SN+E +T P+I + Q+ + Sbjct: 1 MIFMEIGQQIIRYRKQQALSQEKLAEKVYVSYQSISNWENDKTYPDIHSLLLLSQIFQVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 LD + GD + +I + + +K Sbjct: 61 LDQLIKGDIEKMKYTITQVDKKNFKRDTK 89 >gi|332637123|ref|ZP_08415986.1| putative transcriptional regulator [Weissella cibaria KACC 11862] Length = 137 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 1/98 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ ++RK +Q+++A AV+ +E G S + + + ++S + Sbjct: 5 FAQQLTNLRKQKGLSQQQLADKLYMTRQAVSKWETGESSPDLNRMQEIADILDVSVQVLL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 G ++ +K A K ++ Q Sbjct: 65 FGTQVEPGKTSFRDKVSEYMQQDEAD-KDWHQNHRWRQ 101 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L ++RK KG+SQ + L M +S +E G + P++ ++I + + Sbjct: 3 IVFAQQLTNLRKQKGLSQQQLADKLYMTRQAVSKWETGESSPDLNRMQEIADILDVSVQV 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + FG +V K+ R K ++ ++ + DK Sbjct: 63 LLFGTQVEPGKTSFRDKVSEYMQQDEADK 91 >gi|326386490|ref|ZP_08208113.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209151|gb|EGD59945.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 204 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 29/82 (35%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E +G +I+ +R+ T +A V+ E G+ S++ L + Sbjct: 16 EAEAVGARLGQQIRALRRDRGLTLAHLAETTGLSLGLVSQIERGLSEPSVKALHLLASAL 75 Query: 84 EISFDWIYDGEVIDRRYEDVTN 105 ++ W + + ++ Sbjct: 76 GVTVGWFFRDDGEREDTLPESD 97 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++++R+D+G++ + G+ +S E+G + P +K + + W + Sbjct: 26 QQIRALRRDRGLTLAHLAETTGLSLGLVSQIERGLSEPSVKALHLLASALGVTVGWFFRD 85 Query: 176 D---EVIVPKS 183 D E +P+S Sbjct: 86 DGEREDTLPES 96 >gi|254973959|ref|ZP_05270431.1| DNA-binding protein [Clostridium difficile QCD-66c26] gi|255091345|ref|ZP_05320823.1| DNA-binding protein [Clostridium difficile CIP 107932] gi|255313003|ref|ZP_05354586.1| DNA-binding protein [Clostridium difficile QCD-76w55] gi|255515762|ref|ZP_05383438.1| DNA-binding protein [Clostridium difficile QCD-97b34] gi|255648855|ref|ZP_05395757.1| DNA-binding protein [Clostridium difficile QCD-37x79] gi|260682072|ref|YP_003213357.1| DNA-binding protein [Clostridium difficile CD196] gi|260685670|ref|YP_003216803.1| DNA-binding protein [Clostridium difficile R20291] gi|306518972|ref|ZP_07405319.1| DNA-binding protein [Clostridium difficile QCD-32g58] gi|260208235|emb|CBA60614.1| DNA-binding protein [Clostridium difficile CD196] gi|260211686|emb|CBE01972.1| DNA-binding protein [Clostridium difficile R20291] Length = 364 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + RK TQ E+A +++V+ +E G I + L + I+ D + Sbjct: 5 NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYPDITFLPQLATYFNITVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E + + +L Sbjct: 65 ICYEPQMMKEDINKLYNKL 83 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 39/78 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ I L RK+KG++Q E +G+ +++S +E G++ P+I ++ Sbjct: 1 MNELNIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYPDITFLPQLATYFNIT 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + ++ + I + Sbjct: 61 VDELICYEPQMMKEDINK 78 >gi|37524551|ref|NP_927895.1| hypothetical protein plu0545 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525105|ref|NP_928449.1| hypothetical protein plu1137 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525114|ref|NP_928458.1| hypothetical protein plu1146 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783975|emb|CAE12840.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784531|emb|CAE13431.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784540|emb|CAE13440.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 111 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G RI +RK TQ ++A N + AV +E G I + +S + Sbjct: 1 MMTLGQRISALRKHAGLTQAQLAQALNVSQQAVQSWEAGRRRIQISVLPEIAKLLSVSLE 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 ++ E + + I ++L Sbjct: 61 ELFGEESDTIPRKRGPASRLEQQIQIISQL 90 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R+ ++RK G++Q + + L + + ++E GR +I +I ++ L+ Sbjct: 1 MMTLGQRISALRKHAGLTQAQLAQALNVSQQAVQSWEAGRRRIQISVLPEIAKLLSVSLE 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ + +P R +G S + + S P Sbjct: 61 ELFGEESDTIP----RKRGPASRLEQQIQIISQLP 91 >gi|218133469|ref|ZP_03462273.1| hypothetical protein BACPEC_01334 [Bacteroides pectinophilus ATCC 43243] gi|217990844|gb|EEC56850.1| hypothetical protein BACPEC_01334 [Bacteroides pectinophilus ATCC 43243] Length = 143 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RIK++R+ N+ +Q ++A + S ++ EN S+ + + N I+ D Sbjct: 26 HRQIGYRIKEVRELNHISQAQLAEMTDLSVSYISHIENAKRKASLESIIRIVNALGITVD 85 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + G ++ T+ L Sbjct: 86 ELLAGVQMNNPAAYQTDIDML 106 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 + ++ IG R+K +R+ +SQ + ++ + S +S+ E + ++ Sbjct: 15 QSMNQTQTSVNHRQIGYRIKEVRELNHISQAQLAEMTDLSVSYISHIENAKRKASLESII 74 Query: 160 KIKQVTKKHLDWIYFGDEVIVP 181 +I +D + G ++ P Sbjct: 75 RIVNALGITVDELLAGVQMNNP 96 >gi|86355908|ref|YP_467800.1| LacI family transcription regulator [Rhizobium etli CFN 42] gi|86280010|gb|ABC89073.1| probable transcriptional regulator protein, LacI family [Rhizobium etli CFN 42] Length = 189 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +G RI+ +R T E+A + + ++ E S + + Sbjct: 2 EQELEQAIGIRIRTLRLEKGLTLDELAEASGVSRAMISRIERAEASPTASLLARVCAALG 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +S + E ++++ Sbjct: 62 LSLSAFFAEEGQQASPLARRQEQQV 86 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 32/78 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R++++R +KG++ E + G+ + +S E+ P ++ L Sbjct: 8 AIGIRIRTLRLEKGLTLDELAEASGVSRAMISRIERAEASPTASLLARVCAALGLSLSAF 67 Query: 173 YFGDEVIVPKSIKRAKGN 190 + + +R + Sbjct: 68 FAEEGQQASPLARRQEQQ 85 >gi|302343044|ref|YP_003807573.1| phage repressor [Desulfarculus baarsii DSM 2075] gi|301639657|gb|ADK84979.1| putative phage repressor [Desulfarculus baarsii DSM 2075] Length = 249 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 1/76 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ ++G R+K R++ QK+ A +S ++ ENG S L Sbjct: 10 MPSKMLPLPPEIGDRVKAARESFGYNQKDFAELLAIGQSTLSRIENGERPPSPELLYRLA 69 Query: 81 NEY-EISFDWIYDGEV 95 ++ + + G Sbjct: 70 LKFPSVDLRELLVGYP 85 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK-QVTKKHLDWIYFG 175 +K+ R+ G +Q +F +LL + STLS E G P + ++ + L + G Sbjct: 25 VKAARESFGYNQKDFAELLAIGQSTLSRIENGERPPSPELLYRLALKFPSVDLRELLVG 83 >gi|293374855|ref|ZP_06621157.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325840161|ref|ZP_08166969.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|292646524|gb|EFF64532.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325490400|gb|EGC92723.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 356 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 31/82 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I ++RK TQ+++A AV+ +EN I + + S D + Sbjct: 4 NIGKVIYELRKKAKVTQEQLANAVGVSVPAVSKWENNTSYPDITLLPAIARYFNTSIDEL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPY 112 ++ E K+ Sbjct: 64 MSYDMTLSTEEIDVFIKKCQSM 85 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + +RK ++Q + +G+ +S +E + P+I I + +D + Sbjct: 7 KVIYELRKKAKVTQEQLANAVGVSVPAVSKWENNTSYPDITLLPAIARYFNTSIDELMSY 66 Query: 176 DEVIVPKSIK 185 D + + I Sbjct: 67 DMTLSTEEID 76 >gi|225571153|ref|ZP_03780151.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] gi|225159984|gb|EEG72603.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] Length = 134 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G R+K R TQ+E+A AN S ++ ENG SI+ L L + + + Sbjct: 26 EKIGFRVKQARLNAGLTQEELAEKANMSSSFISRLENGKILPSIKKLLMLADIMNVGLED 85 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +++ + Sbjct: 86 LLRDFFRHTGEPSDALTEQIFYQVDMMTV 114 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 + E I + V + +K R + G++Q E + M +S +S Sbjct: 3 ISYFIFSENIVKLIPKVKGAIMEEKIGFR--VKQARLNAGLTQEELAEKANMSSSFISRL 60 Query: 147 EQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 E G+ +P IK + + L+ + Sbjct: 61 ENGKILPSIKKLLMLADIMNVGLEDLLRD 89 >gi|239625419|ref|ZP_04668450.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239519649|gb|EEQ59515.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 141 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDW 89 ++G RI+ +RK TQ+E+A +SAV +ENG + + E+S Sbjct: 2 ELGERIRSLRKKKGLTQEELASKLGLQKSAVAKYENGRVTNIKRATLFKMAEILEVSPGE 61 Query: 90 IYDGEVID 97 + G+ Sbjct: 62 LMYGKEDK 69 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLD 170 +G R++S+RK KG++Q E LG+ S ++ YE GR T + K+ ++ + Sbjct: 1 MELGERIRSLRKKKGLTQEELASKLGLQKSAVAKYENGRVTNIKRATLFKMAEILEVSPG 60 Query: 171 WIYFGDEV 178 + +G E Sbjct: 61 ELMYGKED 68 >gi|116250024|ref|YP_765862.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254672|emb|CAK05746.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 192 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + PE+ Q +G RI+ +R+ T ++A + + ++ E S + + Sbjct: 5 MEPELEQ---AIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARIC 61 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKK 107 +S + E ++ Sbjct: 62 AALGLSLSAFFAEEGQASPLARRQEQQ 88 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 41/104 (39%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + AIG R++++R++K ++ + G+ + +S E+ P +I Sbjct: 1 MDWKMEPELEQAIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARI 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 L + + P + ++ + ++ ++S +P Sbjct: 61 CAALGLSLSAFFAEEGQASPLARRQEQQVWRDPETGYIRRSVSP 104 >gi|150376382|ref|YP_001312978.1| hypothetical protein Smed_4240 [Sinorhizobium medicae WSM419] gi|150030929|gb|ABR63045.1| protein of unknown function DUF955 [Sinorhizobium medicae WSM419] Length = 472 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++D+R TQ + A S +N EN S L L +++I + Sbjct: 8 IGRKVRDLRDGKRLTQAQFAERIGISTSYLNQIENNQRPVSASVLLALAEKFQIDIAELS 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 GE L+ + Sbjct: 68 SGESDRLLSALSEALSDPLFETYSPSLQEL 97 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 33/76 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R K ++Q +F + +G+ S L+ E + + + + + Sbjct: 6 LYIGRKVRDLRDGKRLTQAQFAERIGISTSYLNQIENNQRPVSASVLLALAEKFQIDIAE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + G+ + ++ A Sbjct: 66 LSSGESDRLLSALSEA 81 >gi|269838163|ref|YP_003320391.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787426|gb|ACZ39569.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 367 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 1/91 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G I+ +R+ T +A A S ++ E S + + D Sbjct: 6 RQRIGPAIRRLRQERGMTLDALAAQAGISASHLSRLERSQTLPSFTVLAKIAEVLGVGID 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 E D D + LD IG ++ Sbjct: 66 EFVRLE-RDVTLLDADLGRYLDMLGIGPPVR 95 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ +R+++GM+ G+ S LS E+ +T+P KI +V +D + Sbjct: 13 IRRLRQERGMTLDALAAQAGISASHLSRLERSQTLPSFTVLAKIAEVLGVGIDEFVRLE 71 >gi|167583702|ref|ZP_02376090.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ubonensis Bu] Length = 203 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +S S + VG +I+ +R T +++ A +S ++ E Sbjct: 1 MASSSGSRRTPADAAPSPAAATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIER 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIY 91 + +I A L N I+ D ++ Sbjct: 61 DKANPTIAVAWRLTNALGITLDELF 85 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|78064026|ref|YP_373934.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971911|gb|ABB13290.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 203 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +S S + VG +I+ +R T +++ A +S ++ E Sbjct: 1 MASSSGSRRTPASAAPQPPAATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIER 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIY 91 + +I A L N I+ D ++ Sbjct: 61 DKANPTIAVAWRLTNALGITLDELF 85 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|116512822|ref|YP_811729.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108476|gb|ABJ73616.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 175 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 R+ K VG +IK+ RK TQ+ +A SA++ +E G + + N + Sbjct: 4 REINKFVGMKIKEFRKNKKLTQQGLADLVGVKNSAISNYEQGTRIPKRDFLFRVANALGV 63 Query: 86 SFDWIYDGEVIDRR 99 S D + + + Sbjct: 64 SIDEFFPIQNEETS 77 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K RK+K ++Q L+G+ NS +SNYEQG IP+ ++ +D Sbjct: 7 NKFVGMKIKEFRKNKKLTQQGLADLVGVKNSAISNYEQGTRIPKRDFLFRVANALGVSID 66 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + ++ S + + K Sbjct: 67 EFFPIQNEETSSTLSEINKISSQLEEPRQK 96 >gi|323489112|ref|ZP_08094346.1| ans operon repressor protein [Planococcus donghaensis MPA1U2] gi|323397235|gb|EGA90047.1| ans operon repressor protein [Planococcus donghaensis MPA1U2] Length = 123 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 16/123 (13%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +I+++R+ + + ++A +S V +E+G S+ + L + ++++ D Sbjct: 1 MERIGQKIRELREDHQLSVDDLASQLGIAKSVVWGYESGKKQVSVSHLQLLADYFKVTVD 60 Query: 89 WIYDGEVIDRRYEDVT-------NKKRLDPYAIGARL---------KSIRKDKGMSQIEF 132 +I + + + + N D + K K+ GM Q + Sbjct: 61 YILERNQPTNQLDLIQFADLNSVNLVVDDHPLSEEEIADVTSYLQVKRRLKEDGMLQEKQ 120 Query: 133 GKL 135 Sbjct: 121 AAK 123 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +++ +R+D +S + LG+ S + YE G+ + + + K +D Sbjct: 1 MERIGQKIRELREDHQLSVDDLASQLGIAKSVVWGYESGKKQVSVSHLQLLADYFKVTVD 60 Query: 171 WIYFGDEVI 179 +I ++ Sbjct: 61 YILERNQPT 69 >gi|300702662|ref|YP_003744262.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299070323|emb|CBJ41615.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 209 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 1/104 (0%) Query: 14 LQEYTLIITPEIRQ-YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 +QE + + + + R++++R T +A S ++L E G S + Sbjct: 1 MQETAAPPSDDTDAGVNERIARRVRELRATRGYTLDALAARCGVSRSMISLIERGAASPT 60 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 L +S ++ GE + + + + + Sbjct: 61 AAVLDKLAAGLGVSLASLFGGEREGLPAQPLMRRAQQTQWRDPE 104 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 31/84 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+G P K+ L ++ G Sbjct: 22 RRVRELRATRGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLAAGLGVSLASLFGG 81 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + +P + Q+ + + Sbjct: 82 EREGLPAQPLMRRAQQTQWRDPES 105 >gi|269216039|ref|ZP_06159893.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269130298|gb|EEZ61376.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 139 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I +RK +Q+++A +V+ +E + A+ L + + +S D + Sbjct: 3 LADKIIMLRKKAGMSQEQLAERLGVSRQSVSKWEGSQSMPDMDKAVKLADLFGLSLDSLI 62 Query: 92 DGE 94 + Sbjct: 63 RDD 65 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + +RK GMSQ + + LG+ ++S +E +++P++ A K+ + LD + D Sbjct: 7 IIMLRKKAGMSQEQLAERLGVSRQSVSKWEGSQSMPDMDKAVKLADLFGLSLDSLIRDD 65 >gi|260662800|ref|ZP_05863694.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] gi|260552881|gb|EEX25880.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] Length = 204 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 52/95 (54%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + S RK++GM+Q + L + + +S +E G+++P+ ++ + K + Sbjct: 1 MDQIKIGKFIASCRKERGMTQANLAEKLRISDRAISKWETGKSMPDSGIMLELCDLLKIN 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ + G+ ++ KRA+ N + K + ++K+ Sbjct: 61 VNELLSGERIMTEAYDKRAEENLLAMKQEVEEKNR 95 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I RK TQ +A + A++ +E G L L + +I+ + + Sbjct: 5 KIGKFIASCRKERGMTQANLAEKLRISDRAISKWETGKSMPDSGIMLELCDLLKINVNEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 GE I D ++ L Sbjct: 65 LSGERIMTEAYDKRAEENL 83 >gi|209808838|ref|YP_002274409.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257880761|ref|ZP_05660414.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257892131|ref|ZP_05671784.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257895013|ref|ZP_05674666.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260562585|ref|ZP_05833093.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|209528675|dbj|BAG74976.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257814989|gb|EEV43747.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257828491|gb|EEV55117.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257831392|gb|EEV57999.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260073095|gb|EEW61442.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 260 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 62/231 (26%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLR----------- 80 G RIK +R + T +E+ + + ++ +E G + + L Sbjct: 9 GKRIKQLRLSCGFTMEELGRKIDNSPRATISNWERGTNLPNPQKLKLLSTITNSTIDWIK 68 Query: 81 ----------------------------------------NEYEISFDW---------IY 91 N + ++ D+ I+ Sbjct: 69 WGTLEEYITSYLIDIGYELYIKDFPEIPHKVFKDIQERYSNTFSLNKDYELLNPIIKNIF 128 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG-KLLGMPNSTLSNYEQGR 150 + + + DP +G +++SIRK G++ EFG ++ P ST+S +E G Sbjct: 129 TKYYSKDFEDYRDIEVKPDPKKVGRKIRSIRKKLGLTMQEFGYEVSNSPRSTVSTWEHGG 188 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +P +KI + ++ + F + I KS + + SK +K Sbjct: 189 NLPNKAKLKKIADIANCSVEDLLFDEGFISEKSQVKLINELKEENSKLKEK 239 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 4/107 (3%) Query: 4 NPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMA-IGANQLESAVN 62 N F + K ++Y I E++ K VG +I+ IRK T +E +N S V+ Sbjct: 126 NIFTKYYSKDFEDYRDI---EVKPDPKKVGRKIRSIRKKLGLTMQEFGYEVSNSPRSTVS 182 Query: 63 LFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 +E+G + + + S + + E V L Sbjct: 183 TWEHGGNLPNKAKLKKIADIANCSVEDLLFDEGFISEKSQVKLINEL 229 >gi|134098034|ref|YP_001103695.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291007202|ref|ZP_06565175.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910657|emb|CAM00770.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 488 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 5/103 (4%) Query: 21 ITPEIRQYWKD-----VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 I E R + D G R++ +R+A T E+ + S ++L ENG + Sbjct: 5 IAEEDRNFSTDQDLLVFGQRLRHLRRAAGLTLVELGERVGRAPSQLSLLENGHREPKLSL 64 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 L + S D + + +RR E ++ + RL Sbjct: 65 LRSLADALGSSVDELMSKKPPNRRAELEIAVEQAQLDPLYQRL 107 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 D G RL+ +R+ G++ +E G+ +G S LS E G P++ R + Sbjct: 15 DQDLLVFGQRLRHLRRAAGLTLVELGERVGRAPSQLSLLENGHREPKLSLLRSLADALGS 74 Query: 168 HLDWIY 173 +D + Sbjct: 75 SVDELM 80 >gi|332161859|ref|YP_004298436.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666089|gb|ADZ42733.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 188 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + +G ++K++R+ + + A ++ + E G S ++ + + Sbjct: 1 MKELTRHIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLN 60 Query: 85 ISFDWIYD 92 +SF + Sbjct: 61 VSFSQFLE 68 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +LK++R+++G S + + G+ + L E+G + P + KI Sbjct: 7 HIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQF 66 Query: 173 Y 173 Sbjct: 67 L 67 >gi|317057887|ref|YP_004106354.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315450156|gb|ADU23720.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 169 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 10/171 (5%) Query: 29 WKDVGTR--IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA----LYLRNE 82 K + R ++ IR+ T A S E G+ + IR Sbjct: 1 MKKITARDYLRIIRENYG-TIHYCAETCGFKSSDFGNIEAGVEN-DIRVIANTFFLFSRR 58 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + +++ + E + ++ K + LK R G+SQ + + T Sbjct: 59 FGLNYYELMMMEAKFQLGDEPPKTKPKANVSFAELLKKTRTQAGISQAKLADTICCTKFT 118 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKHLDWI--YFGDEVIVPKSIKRAKGNQ 191 + +E G IP+++ +I K D+ + E P++ + K + Sbjct: 119 VYTWECGDNIPDLEMLERICYALKVPADFFDAVYKAERFQPRTPRERKKKE 169 >gi|298290472|ref|YP_003692411.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296926983|gb|ADH87792.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 229 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 35/85 (41%) Query: 8 ETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG 67 ET+ + L + R + +G +++ +R+ T ++A A ++ ENG Sbjct: 22 ETTNEDLSTGSGAPLVNERTLEQALGQQVRAVRRELELTVSDLASAAGISVGMLSKIENG 81 Query: 68 MCSTSIRYALYLRNEYEISFDWIYD 92 + S S+ + + + ++ Sbjct: 82 LISPSLATLQAISSALNVPISTLFT 106 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 40/106 (37%), Gaps = 1/106 (0%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E + +R A+G +++++R++ ++ + G+ LS E G P Sbjct: 26 EDLSTGSGAPLVNERTLEQALGQQVRAVRRELELTVSDLASAAGISVGMLSKIENGLISP 85 Query: 154 EIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKK 198 + + I + ++ +E + +G + ++ K Sbjct: 86 SLATLQAISSALNVPISTLFTTFEEKRDCSYVPAGQGVRIERRGTK 131 >gi|296875997|ref|ZP_06900055.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432988|gb|EFH18777.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 175 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK +QKE+A + E ++ +ENG A L + + +S ++ Sbjct: 2 NRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQQLADCFGVSVGYLLGY 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKS 120 E + DP +K+ Sbjct: 62 SEYRDSQEASYQLYQKDPDDPYNHVKA 88 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +RK+K +SQ E K + + TLS +E G + + + A+++ + ++ Sbjct: 1 MNRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQQLADCFGVSVGYLLG 60 Query: 175 GDE 177 E Sbjct: 61 YSE 63 >gi|255971922|ref|ZP_05422508.1| predicted protein [Enterococcus faecalis T1] gi|256616820|ref|ZP_05473666.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256763304|ref|ZP_05503884.1| predicted protein [Enterococcus faecalis T3] gi|256957906|ref|ZP_05562077.1| predicted protein [Enterococcus faecalis DS5] gi|257079843|ref|ZP_05574204.1| predicted protein [Enterococcus faecalis JH1] gi|257087648|ref|ZP_05582009.1| predicted protein [Enterococcus faecalis D6] gi|294779495|ref|ZP_06744891.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300860620|ref|ZP_07106707.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|255962940|gb|EET95416.1| predicted protein [Enterococcus faecalis T1] gi|256596347|gb|EEU15523.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256684555|gb|EEU24250.1| predicted protein [Enterococcus faecalis T3] gi|256948402|gb|EEU65034.1| predicted protein [Enterococcus faecalis DS5] gi|256987873|gb|EEU75175.1| predicted protein [Enterococcus faecalis JH1] gi|256995678|gb|EEU82980.1| predicted protein [Enterococcus faecalis D6] gi|294453452|gb|EFG21858.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300849659|gb|EFK77409.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|323481602|gb|ADX81041.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 239 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +K R TQ E+A ++ +EN +I + L N YE++ D + Sbjct: 2 NIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRL 61 Query: 91 YDGEVIDRRYEDVT 104 + Sbjct: 62 LKEDNTMVEKLSKD 75 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG LK R + G++Q E + L + T+SN+E ++ P I ++ + + LD Sbjct: 1 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDR 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D +V K K + Q KK Sbjct: 61 LLKEDNTMVEKLSKDIREGQKYKK 84 >gi|196037891|ref|ZP_03105201.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196031161|gb|EDX69758.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 374 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I D RK TQ+E+A +++V+ +E G I + L + + IS D + Sbjct: 5 NIHKIIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDEL 64 Query: 91 YDGEVIDRRYE 101 + + + Sbjct: 65 ISYKPQMEQED 75 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+K ++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEINIHKIIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIK 185 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIK 77 >gi|307352662|ref|YP_003893713.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307155895|gb|ADN35275.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 83 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 39/78 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + R+K R M+Q E + + + T+++ E+G+ P I+ A KI ++ + Sbjct: 1 MGVTKMKNRIKVYRAMHDMTQEELAEKIRVTRKTINSIERGKYNPSIEVAFKIAKIFRVP 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 ++ I+F ++ I+ Sbjct: 61 VEKIFFFEDETPEDVIED 78 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 27/75 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R ++ TQ+E+A +N E G + SI A + + + + I+ Sbjct: 8 NRIKVYRAMHDMTQEELAEKIRVTRKTINSIERGKYNPSIEVAFKIAKIFRVPVEKIFFF 67 Query: 94 EVIDRRYEDVTNKKR 108 E Sbjct: 68 EDETPEDVIEDPSSP 82 >gi|238852892|ref|ZP_04643295.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4] gi|238834484|gb|EEQ26718.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4] Length = 213 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 6/177 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS---TSIRYALYLRNEYEI 85 + V + ++ K TQKE+A + +N + S + L + Sbjct: 16 RERVKENLNELLKKRGMTQKELAEKTGISYATINNYRRAYAQSSLPSKKNLLAMAKALNC 75 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 D I D + + + + + L+++ +G++ EF + LG+ L Sbjct: 76 EPDEI-DPSYLQFVVTNDKLDNKENLQIFSSNLQALISREGLTYKEFCENLGISYRALWG 134 Query: 146 YEQGRTIPEIKPARKIKQVTKKHLDWIYFG--DEVIVPKSIKRAKGNQSSKKSKKDK 200 + G P + + + + + + D K + S SK+DK Sbjct: 135 WATGEIKPSEESLELLSKHFRIPIKDLLNTSIDTEEATKRSFEILQHIPSNLSKEDK 191 Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 21/69 (30%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + + ++ + T KE A+ + G S L + Sbjct: 95 DNKENLQIFSSNLQALISREGLTYKEFCENLGISYRALWGWATGEIKPSEESLELLSKHF 154 Query: 84 EISFDWIYD 92 I + + Sbjct: 155 RIPIKDLLN 163 >gi|300861593|ref|ZP_07107677.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|295114549|emb|CBL33186.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300849054|gb|EFK76807.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|315144082|gb|EFT88098.1| helix-turn-helix protein [Enterococcus faecalis TX2141] Length = 257 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R N+ TQ+++A + A++ +E G SI L L + Y +S D + G Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 Query: 96 I 96 Sbjct: 67 Y 67 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK+ R + +Q + + L + +S +E G++IP I + + +D Sbjct: 1 MLIQTILKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDE 60 Query: 172 IYFG 175 + G Sbjct: 61 LIQG 64 >gi|224476213|ref|YP_002633819.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420820|emb|CAL27634.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 179 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 41/88 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++RK + TQ+E+A + + ++ E+G S S+ L++ S + Sbjct: 2 NIGQKLRNLRKIKDLTQEELAERTDLSKGYISQIESGQSSPSMESFLHILEVLGTSPELF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++ + D Y G L Sbjct: 62 FKEKPKEKVLYPKAEQAIYDEYDEGYIL 89 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++RK K ++Q E + + +S E G++ P ++ I +V + Sbjct: 1 MNIGQKLRNLRKIKDLTQEELAERTDLSKGYISQIESGQSSPSMESFLHILEVLGTSPE- 59 Query: 172 IYFGDEVIVPKSIKRAK 188 ++F ++ +A+ Sbjct: 60 LFFKEKPKEKVLYPKAE 76 >gi|171317225|ref|ZP_02906424.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171097600|gb|EDT42435.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 203 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +I+ +R T +++ A +S ++ E + +I A L N I+ D Sbjct: 24 PRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDE 83 Query: 90 IY 91 ++ Sbjct: 84 LF 85 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|172062153|ref|YP_001809804.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994670|gb|ACB65588.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 203 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +I+ +R T +++ A +S ++ E + +I A L N I+ D Sbjct: 24 PRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDE 83 Query: 90 IY 91 ++ Sbjct: 84 LF 85 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|322411768|gb|EFY02676.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 73 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ N+ TQKE+A + SA E G S + + N Y ++ D++ Sbjct: 3 QRIRDLREDNDLTQKEVATILSFTHSAYAKIERGERILSAEVLIKISNIYGVNIDYLLGL 62 Query: 94 EVIDRRYEDVT 104 RY Sbjct: 63 TDFPYRYPSKK 73 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D ++Q E +L +S + E+G I + KI + ++D++ Sbjct: 1 MYQRIRDLREDNDLTQKEVATILSFTHSAYAKIERGERILSAEVLIKISNIYGVNIDYLL 60 >gi|271964091|ref|YP_003338287.1| hypothetical protein Sros_2570 [Streptosporangium roseum DSM 43021] gi|270507266|gb|ACZ85544.1| hypothetical protein Sros_2570 [Streptosporangium roseum DSM 43021] Length = 430 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 8/105 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK +R+ +Q ++A +S V+L E+G + + L + + S ++ Sbjct: 7 VGQRIKTVRRQRGLSQAQLAHP-ELSDSYVSLIESGKRTPTPSVLELLAEKLDCSLTYLI 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 +G ++ E + R + +LL Sbjct: 66 NGVTAEQMQEIELALSYAQLAMNNGEVAEART-------RYAELL 103 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K++R+ +G+SQ + + +S +S E G+ P + + L ++ G Sbjct: 9 QRIKTVRRQRGLSQAQLAHP-ELSDSYVSLIESGKRTPTPSVLELLAEKLDCSLTYLING 67 >gi|256854918|ref|ZP_05560282.1| predicted protein [Enterococcus faecalis T8] gi|307290768|ref|ZP_07570666.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|256710478|gb|EEU25522.1| predicted protein [Enterococcus faecalis T8] gi|306498188|gb|EFM67707.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|315028649|gb|EFT40581.1| helix-turn-helix protein [Enterococcus faecalis TX4000] Length = 257 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R N+ TQ+++A + AV+ +E G SI L L + Y +S D + G Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 ++ + V L + + Sbjct: 67 YFKKPQVVGKIYNLKKGILFCII 89 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK+ R + +Q + + L + +S +E G++IP I + + +D Sbjct: 1 MLIQTILKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDE 60 Query: 172 IYFG 175 + G Sbjct: 61 LIQG 64 >gi|239834303|ref|ZP_04682631.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239822366|gb|EEQ93935.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 470 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR TQ MA S +NL E +++ L L + Y++ D + Sbjct: 9 GPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++G++Q + LG+ S L+ E+ + ++ K+ V K LD + Sbjct: 12 IRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 >gi|210615069|ref|ZP_03290438.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787] gi|210150452|gb|EEA81461.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787] Length = 179 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R N TQ+E+A A + ++ E + S SI + + + Sbjct: 2 NIGNKIKELRIEKNLTQEELANRAELSKGFISQLERNLTSPSIATLIDILQCLGTNLTEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E ++ + + ++ I Sbjct: 62 FAEESDEQIVFRKDDFFVKKDTGLRNTIEWI 92 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R +K ++Q E + +S E+ T P I I Q +L Sbjct: 1 MNIGNKIKELRIEKNLTQEELANRAELSKGFISQLERNLTSPSIATLIDILQCLGTNLTE 60 Query: 172 IYFGD 176 + + Sbjct: 61 FFAEE 65 >gi|149203644|ref|ZP_01880613.1| transcriptional regulator, XRE family with cupin sensor [Roseovarius sp. TM1035] gi|149142761|gb|EDM30803.1| transcriptional regulator, XRE family with cupin sensor [Roseovarius sp. TM1035] Length = 211 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Q D+G R+K +R+A T + A S ++ ENG S S + + Y Sbjct: 19 ERHQLRADLGARMKAVRQACGYTLEVAAQRTGLALSTIHKIENGRVSPSYENLIKIARAY 78 Query: 84 EISFDWIYDGEVIDRRYEDVTNKK 107 +I + ++ + + +T + Sbjct: 79 DIGMERLFSADHDATQTTRMTVTR 102 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR+K++R+ G + + G+ ST+ E GR P + KI + ++ ++ Sbjct: 29 ARMKAVRQACGYTLEVAAQRTGLALSTIHKIENGRVSPSYENLIKIARAYDIGMERLFSA 88 Query: 176 D 176 D Sbjct: 89 D 89 >gi|306834504|ref|ZP_07467617.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304423306|gb|EFM26459.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 157 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQKE+A N + V +ENG A L + + +S ++ Sbjct: 2 NRLKELRKEKKLTQKELADKINVSKITVLRWENGERQIKPDKAQQLADFFGVSVGYLLGY 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + E + + I ++ Sbjct: 62 SEYNNSQELIKKIHGDNSPDIAWKI 86 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY- 173 RLK +RK+K ++Q E + + T+ +E G + A+++ + ++ Sbjct: 1 MNRLKELRKEKKLTQKELADKINVSKITVLRWENGERQIKPDKAQQLADFFGVSVGYLLG 60 Query: 174 FGDEVIVPKSIKRAKGNQS 192 + + + IK+ G+ S Sbjct: 61 YSEYNNSQELIKKIHGDNS 79 >gi|291530756|emb|CBK96341.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 302 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RK + TQ+++A AV+ +ENG + + +++S D +Y Sbjct: 7 KQLQMLRKQSGITQEQLADKLGVTAQAVSKWENG-SYPDGDLLPKIADIFDVSIDNLYGR 65 Query: 94 EVIDRRYEDV 103 +E Sbjct: 66 GEERCSFEQQ 75 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +L+ +RK G++Q + LG+ +S +E + P+ KI + +D + Sbjct: 4 VFSKQLQMLRKQSGITQEQLADKLGVTAQAVSKWEN-GSYPDGDLLPKIADIFDVSIDNL 62 Query: 173 Y-FGDE 177 Y G+E Sbjct: 63 YGRGEE 68 >gi|49082682|gb|AAT50741.1| PA4987 [synthetic construct] Length = 200 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI+ +RK T E+A + ++ E + SI + ++ W + Sbjct: 20 LGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWFF 79 Query: 92 DGE 94 E Sbjct: 80 ASE 82 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + D T+ R + + +G R++ +RK +G++ E + +S E+ P Sbjct: 1 MPRPSPPDATDTPRSETHFLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPS 60 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVP 181 I I + + W + + + P Sbjct: 61 IPALFNIARSLGVTIQWFFASEAAVDP 87 >gi|83952999|ref|ZP_00961721.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp. NAS-14.1] gi|83841967|gb|EAP81135.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp. NAS-14.1] Length = 183 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 4/95 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ IR+ +Q+E+A A ++L E S S+ L + IS Sbjct: 2 DIGQRLRSIREERGLSQRELATKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAEF 61 Query: 91 Y----DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + D + Y + K Y L+ + Sbjct: 62 FSTLEDTQSPKVFYRESEFTKVSPTYDGQVSLRQL 96 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RL+SIR+++G+SQ E G+ N T+S E+ +T P + + + + Sbjct: 1 MDIGQRLRSIREERGLSQRELATKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAE 60 Query: 172 IY-FGDEVIVPKSIKR 186 + ++ PK R Sbjct: 61 FFSTLEDTQSPKVFYR 76 >gi|15600180|ref|NP_253674.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107104087|ref|ZP_01368005.1| hypothetical protein PaerPA_01005160 [Pseudomonas aeruginosa PACS2] gi|116053135|ref|YP_793456.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894084|ref|YP_002442953.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254238300|ref|ZP_04931623.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719] gi|254244126|ref|ZP_04937448.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192] gi|296391830|ref|ZP_06881305.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110019|ref|ZP_07795924.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9951271|gb|AAG08372.1|AE004911_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115588356|gb|ABJ14371.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170231|gb|EAZ55742.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719] gi|126197504|gb|EAZ61567.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192] gi|218774312|emb|CAW30129.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310882426|gb|EFQ41020.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 199 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI+ +RK T E+A + ++ E + SI + ++ W + Sbjct: 20 LGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWFF 79 Query: 92 DGE 94 E Sbjct: 80 ASE 82 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + D T+ R + + +G R++ +RK +G++ E + +S E+ P Sbjct: 1 MPRPSPPDATDTPRSETHFLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPS 60 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVP 181 I I + + W + + + P Sbjct: 61 IPALFNIARSLGVTIQWFFASEAAVDP 87 >gi|309778298|ref|ZP_07673226.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308913930|gb|EFP59742.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 373 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ N TQ+E+A +S+V+ +E I L + +S D + Sbjct: 12 LGKKLISLRREANMTQEELATYMGVSKSSVSKWETETTLPDILLLPQLATLFNVSVDELI 71 Query: 92 DGEVI 96 E Sbjct: 72 GYEPQ 76 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 46/99 (46%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + + +G +L S+R++ M+Q E +G+ S++S +E T+P+I ++ Sbjct: 1 MKEGMDMTTIHLGKKLISLRREANMTQEELATYMGVSKSSVSKWETETTLPDILLLPQLA 60 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + +D + + + K++ S++ S+ K Sbjct: 61 TLFNVSVDELIGYEPQLSMKAVNEFYIQLSTEWSQDAGK 99 >gi|289773956|ref|ZP_06533334.1| transcriptional regulator [Streptomyces lividans TK24] gi|289704155|gb|EFD71584.1| transcriptional regulator [Streptomyces lividans TK24] Length = 200 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 38/90 (42%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 L++T E V RI+ +R A + +E+A A +S+++ ENG ++ + Sbjct: 2 LLMTQEDGDLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVT 61 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 L + + D + + D + + Sbjct: 62 LARALDTTLDQLVETADEDVITSPMIDSAH 91 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + S+LS E GR + + + LD + Sbjct: 16 RKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQLVE 75 Query: 175 --GDEVIVPKSIKRAKG 189 ++VI I A G Sbjct: 76 TADEDVITSPMIDSAHG 92 >gi|228475590|ref|ZP_04060308.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] gi|228270372|gb|EEK11807.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] Length = 137 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 37/73 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +RK+ N +Q+++A +++ +E + + ++ L + + +S + + Sbjct: 4 KIGHQIQKLRKSENMSQEKLAEKLGVSRHSISNWEREISNPDLKTILEITKLFNVSLNQL 63 Query: 91 YDGEVIDRRYEDV 103 G I + + V Sbjct: 64 IKGVEIMQVNKYV 76 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 38/65 (58%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +RK + MSQ + + LG+ ++SN+E+ + P++K +I ++ L+ + G Sbjct: 7 HQIQKLRKSENMSQEKLAEKLGVSRHSISNWEREISNPDLKTILEITKLFNVSLNQLIKG 66 Query: 176 DEVIV 180 E++ Sbjct: 67 VEIMQ 71 >gi|21218919|ref|NP_624698.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|6066657|emb|CAB58317.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 200 Score = 71.9 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 38/90 (42%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 L++T E V RI+ +R A + +E+A A +S+++ ENG ++ + Sbjct: 2 LLMTQEDGDLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVT 61 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 L + + D + + D + + Sbjct: 62 LARALDTTLDQLVETADEDVITSPMIDSAH 91 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + S+LS E GR + + + LD + Sbjct: 16 RKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQLVE 75 Query: 175 --GDEVIVPKSIKRAKG 189 ++VI I A G Sbjct: 76 TADEDVITSPMIDSAHG 92 >gi|307726765|ref|YP_003909978.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307587290|gb|ADN60687.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 212 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +I+ +R T +++ A +S ++ E + +I A L N +S D Sbjct: 33 PRVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDS 92 Query: 90 IYDGEVIDR 98 ++ + Sbjct: 93 LFAAQKTPE 101 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ M+ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 37 EQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 >gi|260575082|ref|ZP_05843083.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259022704|gb|EEW25999.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 207 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R++++RK T ++ A+ A S ++ ENG S + L I+ + Sbjct: 26 NLGARVRELRKGRGWTLEQAAVKAGLARSTLSKIENGQMSPTYEAVKKLAEGLAITVPQL 85 Query: 91 YDGEVIDRRYEDVTNKK 107 + + + K Sbjct: 86 FTPPSKAQVNGRLGVTK 102 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK +G + + G+ STLS E G+ P + +K+ + + ++ Sbjct: 29 ARVRELRKGRGWTLEQAAVKAGLARSTLSKIENGQMSPTYEAVKKLAEGLAITVPQLFT 87 >gi|227874017|ref|ZP_03992229.1| DNA-binding protein [Oribacterium sinus F0268] gi|227840133|gb|EEJ50551.1| DNA-binding protein [Oribacterium sinus F0268] Length = 203 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 34/95 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I RK TQ E+A + AV+ +E G L L +I+ + + Sbjct: 5 KIGKFIASCRKEEGMTQAELAEKLGISDRAVSKWETGKSMPDSGIMLELCGFLKINVNEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 GE I + + + L + R K Sbjct: 65 LSGERIMAEFYNKQLEDNLLAMKREVEERDRRALK 99 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 51/95 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + S RK++GM+Q E + LG+ + +S +E G+++P+ ++ K + Sbjct: 1 MDQIKIGKFIASCRKEEGMTQAELAEKLGISDRAVSKWETGKSMPDSGIMLELCGFLKIN 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ + G+ ++ K+ + N + K + +++ Sbjct: 61 VNELLSGERIMAEFYNKQLEDNLLAMKREVEERDR 95 >gi|257792707|ref|YP_003183313.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476604|gb|ACV56924.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 312 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 4/91 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI--- 90 ++ +R N TQ E+A+ +V +E + L L + +E + D + Sbjct: 5 DNLQHLRDTRNMTQSELAMLVGVSRQSVAKWEAEKSYPEMDKLLKLCDLFECTLDDLVRG 64 Query: 91 -YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 G D + +D ++ Sbjct: 65 DLTGRAPDPTRSLPEDAPPVDACGYDEHMRR 95 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R + M+Q E L+G+ +++ +E ++ PE+ K+ + + LD Sbjct: 1 MSFRDNLQHLRDTRNMTQSELAMLVGVSRQSVAKWEAEKSYPEMDKLLKLCDLFECTLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVRGD 65 >gi|149201921|ref|ZP_01878895.1| possible transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149144969|gb|EDM32998.1| possible transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 129 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ R Q+++A A S+++ FE G S L +++ D++ Sbjct: 23 FGRRLRAARTERGLEQQQLAEKAGLPPSSISHFEKGARKPSFDNLRNLAKSLDVTTDYLL 82 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 +R +++N + D L++ R ++G+ Q + + G+P S++S++E+G Sbjct: 1 MAKASSERDDTEMSNDETTDNLFGRR-LRAARTERGLEQQQLAEKAGLPPSSISHFEKGA 59 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 P R + + D++ Sbjct: 60 RKPSFDNLRNLAKSLDVTTDYLL 82 >gi|30261146|ref|NP_843523.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|30254760|gb|AAP25009.1| DNA-binding protein [Bacillus anthracis str. Ames] Length = 73 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+ N +Q ++A + +V+ +E G SI ++L + + I+ D + Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRT 64 Query: 94 EVI 96 + Sbjct: 65 DEE 67 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R+ + SQ + + + + ++S +E G+ P I+ + + +D Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 172 IYFGDEVIVPKS 183 + DE + KS Sbjct: 61 LLRTDEELTQKS 72 >gi|16798819|ref|NP_463497.1| putative repressor protein [Listeria phage A118] gi|254825098|ref|ZP_05230099.1| phage protein [Listeria monocytogenes FSL J1-194] gi|254901046|ref|ZP_05260970.1| hypothetical protein LmonJ_14568 [Listeria monocytogenes J0161] gi|254914004|ref|ZP_05264016.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254933700|ref|ZP_05267059.1| phage protein [Listeria monocytogenes HPB2262] gi|5823634|emb|CAB53822.1| putative repressor protein [Listeria phage A118] gi|293585264|gb|EFF97296.1| phage protein [Listeria monocytogenes HPB2262] gi|293592021|gb|EFG00356.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594341|gb|EFG02102.1| phage protein [Listeria monocytogenes FSL J1-194] gi|332310432|gb|EGJ23527.1| Cro/CI family transcriptional regulator [Listeria monocytogenes str. Scott A] Length = 101 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I ++R +Q ++A N S + ++E + + L + + ++ D++ Sbjct: 3 IGKKISELRNKRGISQIQLAKDLNVSTSTIGMWETDKRAIKDELIVQLADYFNVTTDYLL 62 Query: 92 DGEVIDRRYE----DVTNKKRLDPYAIGARLKSIRKDK 125 E D + + I LK IR K Sbjct: 63 GREKFDNSDLLAAHIDNDLTEEERIEIEKYLKFIRSQK 100 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 38/88 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ +R +G+SQI+ K L + ST+ +E + + + ++ D+ Sbjct: 1 MTIGKKISELRNKRGISQIQLAKDLNVSTSTIGMWETDKRAIKDELIVQLADYFNVTTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + ++ + N +++ + + Sbjct: 61 LLGREKFDNSDLLAAHIDNDLTEEERIE 88 >gi|291541679|emb|CBL14789.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 64 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 33/61 (54%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R+ ++ Q E+A ++ + +E G S + + + L + Y++S D+I Sbjct: 4 KRLRDLREDHDMKQSEVAEYLGIQQTVYSRYERGFQSIPVEHLIKLADLYKVSTDYILGR 63 Query: 94 E 94 + Sbjct: 64 K 64 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +R+D M Q E + LG+ + S YE+G ++ K+ + K D+I Sbjct: 1 MYFKRLRDLREDHDMKQSEVAEYLGIQQTVYSRYERGFQSIPVEHLIKLADLYKVSTDYI 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|258611915|ref|ZP_05243102.2| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290892307|ref|ZP_06555302.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293596363|ref|ZP_05230968.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|293597004|ref|ZP_05266446.2| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|300764870|ref|ZP_07074859.1| prophage repressor protein [Listeria monocytogenes FSL N1-017] gi|258607134|gb|EEW19742.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290558133|gb|EFD91652.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293584645|gb|EFF96677.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293595206|gb|EFG02967.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300514357|gb|EFK41415.1| prophage repressor protein [Listeria monocytogenes FSL N1-017] Length = 117 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 1/98 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I + K VG +IK R+ Q+ +A + ++ +ENG + L + Sbjct: 6 IMELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFN 65 Query: 85 ISFDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSI 121 D + + E + +D ++ I Sbjct: 66 KRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDI 103 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K R+++G++Q + L T+S YE G ++ ++ K LD Sbjct: 10 NKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLD 69 Query: 171 WIY 173 + Sbjct: 70 DFF 72 >gi|257416855|ref|ZP_05593849.1| predicted protein [Enterococcus faecalis AR01/DG] gi|257158683|gb|EEU88643.1| predicted protein [Enterococcus faecalis ARO1/DG] Length = 239 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +K R TQ E+A ++ +EN +I + L N YE++ D + Sbjct: 2 NIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRL 61 Query: 91 YDGEVIDRRYEDVT 104 + Sbjct: 62 LKEDNTMVEKLSKD 75 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG LK R + G++Q E + L + T+SN+E ++ P I ++ + + LD Sbjct: 1 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDR 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D +V K K + Q KK Sbjct: 61 LLKEDNTMVEKLSKDIREGQKYKK 84 >gi|228962124|ref|ZP_04123604.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797560|gb|EEM44693.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 108 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 38/87 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+KD+R+ TQ+++A +S ++ FE+G S S + +++S D+I Sbjct: 4 FGQRLKDLRREKKLTQQDIADVLGIEKSNISRFESGKQSLSSENIIKTAKYFDVSVDYIL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + D + ++ Sbjct: 64 GISDYKTINKKKEEQIPKDVVKLIKKI 90 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RLK +R++K ++Q + +LG+ S +S +E G+ + K + +D Sbjct: 1 MNMFGQRLKDLRREKKLTQQDIADVLGIEKSNISRFESGKQSLSSENIIKTAKYFDVSVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +I + K+I + K Q K K K N Sbjct: 61 YILG---ISDYKTINKKKEEQIPKDVVKLIKKIN 91 >gi|226355114|ref|YP_002784854.1| XRE family transcriptional regulator [Deinococcus deserti VCD115] gi|226317104|gb|ACO45100.1| putative Transcriptional regulator, XRE family [Deinococcus deserti VCD115] Length = 80 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P +++ VG RI+++R A Q E A A + EN + + + + Sbjct: 11 PLVQEVRIRVGQRIRELRLAKGMNQDEFAAAAGIHRTHPGKLENAQIDPQLSTLVKVASA 70 Query: 83 YEISFDWIYD 92 + D + Sbjct: 71 LGVRVDELLT 80 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ +R KGM+Q EF G+ + E + P++ K+ +D + Sbjct: 22 QRIRELRLAKGMNQDEFAAAAGIHRTHPGKLENAQIDPQLSTLVKVASALGVRVDELLT 80 >gi|172064748|ref|YP_001812398.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171998233|gb|ACB69149.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 115 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 7/100 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ R+ +Q E+A A+ S++ FE+G S L N E++ D++ Sbjct: 13 ERLRAARELRKWSQGELAEKASMPPSSIAHFESGSRKPSFDTLRRLANALEVTTDYLLGR 72 Query: 94 -------EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + D + DV+ D LK + + Sbjct: 73 VDDPTMAQAADPLFRDVSKLTGNDRELAKDFLKMLAERNK 112 Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL++ R+ + SQ E + MP S+++++E G P R++ + D++ Sbjct: 11 FQERLRAARELRKWSQGELAEKASMPPSSIAHFESGSRKPSFDTLRRLANALEVTTDYLL 70 >gi|325000344|ref|ZP_08121456.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 196 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R+ +R T +++ S ++ E+G ++ L L +++ D + Sbjct: 12 VGPRLAGLRSERGMTLADLSEATGISVSTLSRLESGGRRPTLELLLPLATAHQVPLDELV 71 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +R ++GM+ + + G+ STLS E G P ++ + + LD + Sbjct: 16 LAGLRSERGMTLADLSEATGISVSTLSRLESGGRRPTLELLLPLATAHQVPLDELV 71 >gi|296166113|ref|ZP_06848558.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898522|gb|EFG78083.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 191 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R T +E+ A S ++ E+G ++ + L +S D + Sbjct: 15 RRLRELRMQRGMTLQEVGAIAGIDISTLSRLESGKRRLALDHLPRLARALSVSTDELLQP 74 Query: 94 EVIDRRYEDVTNKKR 108 + + Sbjct: 75 AEANDPRVRGAARTH 89 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL+ +R +GM+ E G + G+ STLS E G+ + ++ + D Sbjct: 11 LQVRRRLRELRMQRGMTLQEVGAIAGIDISTLSRLESGKRRLALDHLPRLARALSVSTDE 70 Query: 172 IYFGDEVIVPKS 183 + E P+ Sbjct: 71 LLQPAEANDPRV 82 >gi|257440049|ref|ZP_05615804.1| SOS-response transcriptional repressor [Faecalibacterium prausnitzii A2-165] gi|257197401|gb|EEU95685.1| SOS-response transcriptional repressor [Faecalibacterium prausnitzii A2-165] Length = 209 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ RK + +Q E+A + AV +E+G S L + + D++ Sbjct: 7 LRQCRKQKHMSQAELASLLGVTQQAVGKWESGKSSPDPTTVAKLAEILDTTADYLL 62 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ RK K MSQ E LLG+ + +E G++ P+ K+ ++ D+ Sbjct: 1 MSFPELLRQCRKQKHMSQAELASLLGVTQQAVGKWESGKSSPDPTTVAKLAEILDTTADY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|320353458|ref|YP_004194797.1| helix-turn-helix domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121960|gb|ADW17506.1| helix-turn-helix domain protein [Desulfobulbus propionicus DSM 2032] Length = 149 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ +I + K +G R+K+ R N T +++ +++ EN S L Sbjct: 1 MSTKINEEVKKIGNRLKEFRVENGLTLVQLSELIGISHGSLSGLENNKSKPSAETLSNLC 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 EI W+ G + +K L+ Sbjct: 61 LYTEIDIVWLLTGRREKPIERKIPTRKFEIFEQAEEWLRE 100 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R + G++ ++ +L+G+ + +LS E ++ P + + T+ + W+ G Sbjct: 14 NRLKEFRVENGLTLVQLSELIGISHGSLSGLENNKSKPSAETLSNLCLYTEIDIVWLLTG 73 Query: 176 ---DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + ++ + + +++ +++ NP Sbjct: 74 RREKPIERKIPTRKFEIFEQAEEWLREEVQKNP 106 >gi|152982459|ref|YP_001354080.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282536|gb|ABR90946.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 221 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 29/83 (34%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 T + PE+ +G R+ ++R A TQ +A + ++ EN I + Sbjct: 6 TTDLPPELSDIELRLGRRVSELRTARGYTQDRLASETGFTKGYLSKIENSKIIPPIGTLI 65 Query: 78 YLRNEYEISFDWIYDGEVIDRRY 100 + + E +R Sbjct: 66 KIAQALHTDLAELLGTETAERSD 88 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R +G +Q G LS E + IP I KI Q L + + Sbjct: 26 ELRTARGYTQDRLASETGFTKGYLSKIENSKIIPPIGTLIKIAQALHTDLAELLGTETAE 85 Query: 180 VPKSI 184 +I Sbjct: 86 RSDAI 90 >gi|91782830|ref|YP_558036.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91686784|gb|ABE29984.1| Transcriptional Regulator, XRE(MerR) family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 191 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E+A A + ++ E G + SI + + ++ + Sbjct: 15 IGSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLVGIARALGVTVQYFV 74 Query: 92 DGEVIDRRYEDVTNKKRL 109 D D+ ++ K Sbjct: 75 DTPTEDKSVLRGSDLKYF 92 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 N K AIG++++++R+ + E K G+ LS E+G P I I Sbjct: 4 PLNNKAHVAVAIGSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLVGIA 63 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKR 186 + + + D KS+ R Sbjct: 64 RALGVTVQYFV--DTPTEDKSVLR 85 >gi|23502476|ref|NP_698603.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|148559184|ref|YP_001259476.1| Cro/CI family transcriptional regulator [Brucella ovis ATCC 25840] gi|161619553|ref|YP_001593440.1| hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365] gi|163843861|ref|YP_001628265.1| hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445] gi|254702330|ref|ZP_05164158.1| hypothetical protein Bsuib55_15923 [Brucella suis bv. 5 str. 513] gi|254704859|ref|ZP_05166687.1| hypothetical protein Bsuib36_13258 [Brucella suis bv. 3 str. 686] gi|254710644|ref|ZP_05172455.1| hypothetical protein BpinB_10311 [Brucella pinnipedialis B2/94] gi|254714828|ref|ZP_05176639.1| hypothetical protein BcetM6_16109 [Brucella ceti M644/93/1] gi|254717885|ref|ZP_05179696.1| hypothetical protein BcetM_16061 [Brucella ceti M13/05/1] gi|256032137|ref|ZP_05445751.1| hypothetical protein BpinM2_16082 [Brucella pinnipedialis M292/94/1] gi|256061658|ref|ZP_05451797.1| hypothetical protein Bneo5_15035 [Brucella neotomae 5K33] gi|256370026|ref|YP_003107537.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260565903|ref|ZP_05836373.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|261219732|ref|ZP_05934013.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261318215|ref|ZP_05957412.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261322622|ref|ZP_05961819.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261325667|ref|ZP_05964864.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261752894|ref|ZP_05996603.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755553|ref|ZP_05999262.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265989247|ref|ZP_06101804.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|23348469|gb|AAN30518.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] gi|148370441|gb|ABQ60420.1| transcriptional regulator, Cro/CI family [Brucella ovis ATCC 25840] gi|161336364|gb|ABX62669.1| Hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365] gi|163674584|gb|ABY38695.1| Hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445] gi|256000189|gb|ACU48588.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260155421|gb|EEW90501.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|260924821|gb|EEX91389.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261295312|gb|EEX98808.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261297438|gb|EEY00935.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261301647|gb|EEY05144.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261742647|gb|EEY30573.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745306|gb|EEY33232.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264661444|gb|EEZ31705.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 470 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR TQ MA S +NL E +++ L L + Y++ D + Sbjct: 9 GPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++G++Q + LG+ S L+ E+ + ++ K+ V K LD + Sbjct: 12 IRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 >gi|322688843|ref|YP_004208577.1| hypothetical protein BLIF_0656 [Bifidobacterium longum subsp. infantis 157F] gi|320460179|dbj|BAJ70799.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 161 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R+ TQ + A + A++ +E G SI + +E+ + Sbjct: 3 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMARLM 62 Query: 92 D 92 + Sbjct: 63 E 63 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +K +R+++G++Q +F L + LS +E+G P I R I + + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 172 IY 173 + Sbjct: 61 LM 62 >gi|310287452|ref|YP_003938710.1| helix-turn-helix motif [Bifidobacterium bifidum S17] gi|311064368|ref|YP_003971093.1| hypothetical protein BBPR_0984 [Bifidobacterium bifidum PRL2010] gi|309251388|gb|ADO53136.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum S17] gi|310866687|gb|ADP36056.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum PRL2010] Length = 161 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R+ TQ + A + A++ +E G SI + +E+ + Sbjct: 3 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMARLM 62 Query: 92 D 92 + Sbjct: 63 E 63 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +K +R+++G++Q +F L + LS +E+G P I R I + + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 172 IY 173 + Sbjct: 61 LM 62 >gi|257870572|ref|ZP_05650225.1| predicted protein [Enterococcus gallinarum EG2] gi|257804736|gb|EEV33558.1| predicted protein [Enterococcus gallinarum EG2] Length = 275 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G RI R+ N TQ +A A++ +E G I L ++S D Sbjct: 7 RQIGQRIASKRRELNMTQSNLADQLLVSYQAISNWERGNTLPDIEKLPQLATILQLSIDE 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + + + + + +K Sbjct: 67 LLGNSGVAVMHYHEGVADSQEITTLAPIIK 96 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + IG R+ S R++ M+Q L + +SN+E+G T+P+I+ ++ + Sbjct: 1 MNEFNIRQIGQRIASKRRELNMTQSNLADQLLVSYQAISNWERGNTLPDIEKLPQLATIL 60 Query: 166 KKHLDWIY 173 + +D + Sbjct: 61 QLSIDELL 68 >gi|210630507|ref|ZP_03296490.1| hypothetical protein COLSTE_00375 [Collinsella stercoris DSM 13279] gi|210160441|gb|EEA91412.1| hypothetical protein COLSTE_00375 [Collinsella stercoris DSM 13279] Length = 234 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 16/133 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +RI+ +R+ + TQ E+A V +E G L + I+ D + Sbjct: 33 LASRIRGLRENASMTQGELASRVFVSRQTVINWEKGRTLPDAESLKRLSSVLGITLDALL 92 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 D +R + +K + L S KL+G+ T+++ Sbjct: 93 DERSEERLRQIEGERKIFKLAILFECL--------WSLE---KLIGVIVVTIAH---KFL 138 Query: 152 IPEIKPARKIKQV 164 P A +I V Sbjct: 139 DPS--AAYQIADV 149 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + DG + + P A ++ +R++ M+Q E + + T+ N+E+G Sbjct: 11 LMDGGSDTIHATGLDAHTSVGPLASR--IRGLRENASMTQGELASRVFVSRQTVINWEKG 68 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQS 192 RT+P+ + +++ V LD + + + +++ +G + Sbjct: 69 RTLPDAESLKRLSSVLGITLDALL---DERSEERLRQIEGERK 108 >gi|189439596|ref|YP_001954677.1| putative transcriptional regulator [Bifidobacterium longum DJO10A] gi|317481901|ref|ZP_07940928.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|189428031|gb|ACD98179.1| Hypothetical transcriptional regulator [Bifidobacterium longum DJO10A] gi|316916692|gb|EFV38087.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 161 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R+ TQ + A + A++ +E G SI + +E+ + Sbjct: 3 IGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMARLM 62 Query: 92 D 92 + Sbjct: 63 E 63 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +K +R+++G++Q +F L + LS +E+G P I R I + + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 172 IY 173 + Sbjct: 61 LM 62 >gi|312862721|ref|ZP_07722961.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322516899|ref|ZP_08069796.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|311101581|gb|EFQ59784.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322124522|gb|EFX96004.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 9/103 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K+IR+A +Q +A S+ +ENG + + L + ++ + Sbjct: 4 GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSILAELFGVAETYFLS 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 I Y ++ + R + ++R K + + + + Sbjct: 64 EHEIVEVYLELNEENRQE---------ALRLTKALLEEQEAEK 97 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK IR+ +GMSQ K LG+ S+ N+E G+T P K + ++ + Sbjct: 1 MFSGQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSILAELFGVAETY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 E++ + Q + + K Sbjct: 61 FLSEHEIVEVYLELNEENRQEALRLTK 87 >gi|310639686|ref|YP_003944444.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309244636|gb|ADO54203.1| Predicted transcriptional regulator [Paenibacillus polymyxa SC2] Length = 116 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + D+GTRI+ R+ N TQ+++A + + + E G S S+ + L NE + D Sbjct: 3 YADLGTRIRQERQRLNLTQEKLAERVDLSHAYIGQIERGERSLSLETLVKLANELGSTVD 62 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 ++ V + + K+ Sbjct: 63 YLLSEAVEVKDEALINKIKQ 82 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 9/95 (9%), Positives = 41/95 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R++ R+ ++Q + + + + ++ + E+G ++ K+ Sbjct: 1 MNYADLGTRIRQERQRLNLTQEKLAERVDLSHAYIGQIERGERSLSLETLVKLANELGST 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 +D++ + +++ +S ++++ + Sbjct: 61 VDYLLSEAVEVKDEALINKIKQTIISRSLEEQQMA 95 >gi|302388210|ref|YP_003824032.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198838|gb|ADL06409.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 177 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++K++R TQ+E+A A + ++ E + S SI L + S Sbjct: 2 DIGAKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLLDILQCLGTSVGEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ ++ + +K I Sbjct: 62 FNESPEEQIVFGKSDYFEKHDAELKNAIKWI 92 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA+LK +R KG++Q E + +S E+ T P I I Q + Sbjct: 1 MDIGAKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLLDILQCLGTSVGE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|295103878|emb|CBL01422.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii SL3/3] Length = 210 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K RK +Q E+A + AV +E+G S + + D++ Sbjct: 7 LKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADYLL 62 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK RK +G+SQ E LG+ + +E G++ P+ +I ++ D+ Sbjct: 1 MSFSELLKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|256160334|ref|ZP_05458027.1| hypothetical protein BcetM4_15110 [Brucella ceti M490/95/1] gi|256255538|ref|ZP_05461074.1| hypothetical protein BcetB_14887 [Brucella ceti B1/94] gi|261222746|ref|ZP_05937027.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265998708|ref|ZP_06111265.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260921330|gb|EEX87983.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262553332|gb|EEZ09166.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 470 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR TQ MA S +NL E +++ L L + Y++ D + Sbjct: 9 GPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++G++Q + LG+ S L+ E+ + ++ K+ V K LD + Sbjct: 12 IRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 >gi|257413803|ref|ZP_04744284.2| transcriptional regulator, Cro/CI family [Roseburia intestinalis L1-82] gi|257202203|gb|EEV00488.1| transcriptional regulator, Cro/CI family [Roseburia intestinalis L1-82] gi|291538784|emb|CBL11895.1| Uncharacterized conserved protein, contains double-stranded beta-helix domain [Roseburia intestinalis XB6B4] Length = 183 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + D+G R+K++R TQ+E+A + + ++ E S SI L + + Sbjct: 2 EVRMDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTT 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E ++ + + ++ I Sbjct: 62 PAEFFTDEEPEQIVFEKDDYFEKISEDGNKMIEWI 96 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R G++Q E + +S E+ + P I I Q Sbjct: 5 MDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTPAE 64 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + +E P+ I K + K S+ K Sbjct: 65 FFTDEE---PEQIVFEKDDYFEKISEDGNK 91 >gi|166030939|ref|ZP_02233768.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC 27755] gi|166029206|gb|EDR47963.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC 27755] Length = 179 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK++R A TQ+E+A + + ++ E + S SI + + + Sbjct: 2 DIGKKIKELRVAKGLTQEELADRSELSKGFISQLERDLTSPSIATLMDILQCLGTTVSEF 61 Query: 91 YDGEVIDRRYEDVTNK 106 + E D+ + Sbjct: 62 FQEEPEDQIVFQNEDY 77 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R KG++Q E + +S E+ T P I I Q + Sbjct: 1 MDIGKKIKELRVAKGLTQEELADRSELSKGFISQLERDLTSPSIATLMDILQCLGTTVSE 60 Query: 172 IYFGD 176 + + Sbjct: 61 FFQEE 65 >gi|160942797|ref|ZP_02090038.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii M21/2] gi|158445962|gb|EDP22965.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii M21/2] Length = 210 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K RK +Q E+A + AV +E+G S + + D++ Sbjct: 7 LKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADYLL 62 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK RK +G+SQ E LG+ + +E G++ P+ +I ++ D+ Sbjct: 1 MSFSELLKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|16804368|ref|NP_465853.1| hypothetical protein lmo2329 [Listeria monocytogenes EGD-e] gi|47096028|ref|ZP_00233630.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|258612330|ref|ZP_05270017.2| transcriptional regulator [Listeria monocytogenes F6900] gi|16411818|emb|CAD00407.1| lmo2329 [Listeria monocytogenes EGD-e] gi|47015625|gb|EAL06556.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|258610932|gb|EEW23540.1| transcriptional regulator [Listeria monocytogenes F6900] Length = 158 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + +RK N TQ ++A + + +E + + + +++S D++ Sbjct: 2 FGDILMKLRKNKNLTQSDIAKILGVARTTYSSYEQNRRMPDAEIQIKIADYFDVSLDYL- 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + T +D A +K I Sbjct: 61 --HGRGKNNIADTIAAHIDSNASEEDIKEI 88 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 46/87 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G L +RK+K ++Q + K+LG+ +T S+YEQ R +P+ + KI LD++ Sbjct: 1 MFGDILMKLRKNKNLTQSDIAKILGVARTTYSSYEQNRRMPDAEIQIKIADYFDVSLDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + + + +I + +S++ K+ Sbjct: 61 HGRGKNNIADTIAAHIDSNASEEDIKE 87 >gi|148988905|ref|ZP_01820320.1| Transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP6-BS73] gi|147925716|gb|EDK76792.1| Transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP6-BS73] Length = 245 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + VG +IK RK N TQ +A + + ++ +E G+ + L + + Sbjct: 1 MDNLAQHVGEKIKFFRKENGWTQSVLAEKMSTSKQTISKYEKGIIKVNQDTIFKLADIFG 60 Query: 85 ISFDWIYD 92 +S D + Sbjct: 61 VSIDSFFP 68 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Query: 109 LDPYAIG--ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D A ++K RK+ G +Q + + T+S YE+G K+ + Sbjct: 1 MDNLAQHVGEKIKFFRKENGWTQSVLAEKMSTSKQTISKYEKGIIKVNQDTIFKLADIFG 60 Query: 167 KHLDWIY--FGDEVIVPKSIKRAKGNQSSKKSKK 198 +D + +E+ I+ + + +K Sbjct: 61 VSIDSFFPSIIEEIATTSPIQSIYDQLTPPRQEK 94 >gi|107029107|ref|YP_626202.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689734|ref|YP_835357.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170733070|ref|YP_001765017.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105898271|gb|ABF81229.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116647823|gb|ABK08464.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169816312|gb|ACA90895.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 191 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 30/90 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R+ T E A A + ++ E G + SI + + ++ + Sbjct: 15 LGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFI 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 D R + + + Sbjct: 75 DTPTEARSVCRGNAMQYFQFANSASLFARL 104 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 ++ L ++G +++++R+ ++ E + G+ LS E+GR P I +I Sbjct: 4 PPDESVLVAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIA 63 Query: 163 QVTKKHLDWIY 173 Q + + Sbjct: 64 QALGVTMQYFI 74 >gi|323126868|gb|ADX24165.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 113 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R TQ ++A + A +E G+ + + L N + +S D + G Sbjct: 5 ERLKLLRTQAKLTQSQIAKKLGVSQQAYGDWERGVKKPTQDNLVKLSNIFNVSVDSLLVG 64 Query: 94 EVIDRR 99 E D Sbjct: 65 EENDVD 70 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R ++Q + K LG+ ++E+G P K+ + +D Sbjct: 1 MKFTERLKLLRTQAKLTQSQIAKKLGVSQQAYGDWERGVKKPTQDNLVKLSNIFNVSVDS 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G+E V S +SK K++K Sbjct: 61 LLVGEENDVDLSEVEILFRNTSKGMTKEEK 90 >gi|309388333|gb|ADO76213.1| transcriptional regulator, XRE family [Halanaerobium praevalens DSM 2228] Length = 375 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 37/76 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+IR +N +QK++A + ++ +E + S++ + + + +S D++ Sbjct: 6 KRLKNIRNQHNLSQKKLAEELGYARTTISNYEQNIRIPSLQTITEIADYFNVSVDYLLGR 65 Query: 94 EVIDRRYEDVTNKKRL 109 I ++D+ K Sbjct: 66 TKIKNTFQDLILNKMQ 81 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK+IR +SQ + + LG +T+SNYEQ IP ++ +I +D++ Sbjct: 4 FYKRLKNIRNQHNLSQKKLAEELGYARTTISNYEQNIRIPSLQTITEIADYFNVSVDYLL 63 >gi|296158619|ref|ZP_06841449.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295891187|gb|EFG70975.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 212 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +I+ +R T +++ A +S ++ E + +I A L N +S D Sbjct: 33 PRVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDS 92 Query: 90 IYDGEVIDR 98 ++ + Sbjct: 93 LFAPQKTPE 101 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ M+ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 37 EQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 >gi|187921632|ref|YP_001890664.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187720070|gb|ACD21293.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 212 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +I+ +R T +++ A +S ++ E + +I A L N +S D Sbjct: 33 PRVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDS 92 Query: 90 IYDGEVIDR 98 ++ + Sbjct: 93 LFAPQKTPE 101 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ M+ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 37 EQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 >gi|116510849|ref|YP_808065.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116106503|gb|ABJ71643.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 185 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G ++ R + N TQ+E+A A++ +E+ ++ + L Y+ Sbjct: 2 LGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNLETLIALAELYDSDL 57 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G L+ R K ++Q E K L +S +E +T P ++ + ++ + Sbjct: 1 MLGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNLETLIALAELYD---SDL 57 Query: 173 YFGDEVIVPKSIKR 186 + I P+ K+ Sbjct: 58 LAFAKGIEPQKRKK 71 >gi|91777117|ref|YP_552325.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91689777|gb|ABE32975.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 208 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +I+ +R T +++ A +S ++ E + +I A L N +S D Sbjct: 29 PRVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDS 88 Query: 90 IYDGEVIDR 98 ++ + Sbjct: 89 LFAPQKTPE 97 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ M+ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 33 EQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 90 >gi|67078395|ref|YP_246012.1| transcriptional regulator [Bacillus cereus E33L] gi|66970701|gb|AAY60673.1| conserved hypothetical protein [Bacillus cereus E33L] Length = 186 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ RK +N +Q+E+A + +++ +EN I L + + S D + Sbjct: 2 NIGRQIQYFRKRDNMSQEELAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNASLDDL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G+V + E + Sbjct: 62 VKGDVKIMKEELQKSD 77 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 38/77 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ RK MSQ E + + + ++SN+E R P+I + + LD Sbjct: 1 MNIGRQIQYFRKRDNMSQEELAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNASLDD 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + GD I+ + ++++ Sbjct: 61 LVKGDVKIMKEELQKSD 77 >gi|227824270|ref|ZP_03989102.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229827135|ref|ZP_04453204.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|331084539|ref|ZP_08333639.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] gi|157816229|gb|ABV82121.1| HTH domain protein [Eubacterium saburreum] gi|157816232|gb|ABV82123.1| HTH domain protein [Streptococcus salivarius] gi|226904769|gb|EEH90687.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229788753|gb|EEP24867.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|330401089|gb|EGG80683.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] Length = 114 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 3/98 (3%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +Q G +I+ +R + TQ+E+A N A++ +E + + + + Sbjct: 2 NQKQTDITTGKQIRHLRTQSGMTQEELAGKLNVTRQALSNWERDVNEPDLNTLKKICFLF 61 Query: 84 EISFDWI---YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + D ++ + N + + Sbjct: 62 GVHMDDFAKEVITKMETCEKKRNDNLISMIWQLDFFMV 99 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R GM+Q E L + LSN+E+ P++ +KI + H+D Sbjct: 12 KQIRHLRTQSGMTQEELAGKLNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMDDFAKE 71 Query: 176 DEVIVPKSIKRAKGNQSS 193 + K+ N S Sbjct: 72 VITKMETCEKKRNDNLIS 89 >gi|153938184|ref|YP_001392454.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934080|gb|ABS39578.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320440|gb|ADG00818.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 93 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 34/87 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++R+ TQ+E+ + V+ +E + +I + L + + +S D++ Sbjct: 2 FGDRLKELREEKELTQEELGKLLSVSRQTVSGYEAEVIEPNINNLVRLSDIFNVSLDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 K + + + Sbjct: 62 GRTKERYNLNLENKKNKELLLDLIKVI 88 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK +R++K ++Q E GKLL + T+S YE P I ++ + LD++ Sbjct: 1 MFGDRLKELREEKELTQEELGKLLSVSRQTVSGYEAEVIEPNINNLVRLSDIFNVSLDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ +R N +KK+K+ Sbjct: 61 LG-------RTKERYNLNLENKKNKE 79 >gi|134293636|ref|YP_001117372.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136793|gb|ABO57907.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 191 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R+ T E A A + ++ E G + SI + + ++ + Sbjct: 15 LGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFI 74 Query: 92 D 92 D Sbjct: 75 D 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++++R+ ++ E + G+ LS E+GR P I +I Q + + Sbjct: 17 NKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTMQYFI 74 >gi|226325615|ref|ZP_03801133.1| hypothetical protein COPCOM_03428 [Coprococcus comes ATCC 27758] gi|225205739|gb|EEG88093.1| hypothetical protein COPCOM_03428 [Coprococcus comes ATCC 27758] Length = 279 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK+ RK TQ+++A + AVN +E G I + +I + + Sbjct: 2 QIGEKIKNYRKTAGLTQEQVADYLDVSTPAVNKWEKGNTYPDISLLPAIARLLKIDMNEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + E L ++ + +K+ K Sbjct: 62 FSFREELTEKEIGQFVNELSEVSLDSFIKAFEMGKN 97 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 37/73 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K+ RK G++Q + L + ++ +E+G T P+I I ++ K ++ Sbjct: 1 MQIGEKIKNYRKTAGLTQEQVADYLDVSTPAVNKWEKGNTYPDISLLPAIARLLKIDMNE 60 Query: 172 IYFGDEVIVPKSI 184 ++ E + K I Sbjct: 61 LFSFREELTEKEI 73 >gi|134300926|ref|YP_001114422.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053626|gb|ABO51597.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 152 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K++R+ TQ+ +A N +SA+ L+E L + S D++ Sbjct: 6 KRMKELREGKGLTQQALADALNIGKSAIALYETEKRQPDPDTLKKLAQFFNCSVDYLL 63 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K +R+ KG++Q L + S ++ YE + P+ +K+ Q +D++ Sbjct: 4 FRKRMKELREGKGLTQQALADALNIGKSAIALYETEKRQPDPDTLKKLAQFFNCSVDYLL 63 >gi|322804925|emb|CBZ02484.1| transcriptional regulator, XRE family [Clostridium botulinum H04402 065] Length = 130 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 5/104 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +RK +Q E+ N ++ +E G + + + L + +EIS D + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELV-- 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI-RKDKGMSQIEFGKLL 136 +D + ++ T + L + + SI R++ M + K++ Sbjct: 63 --MDVKAKESTKTEPLVMNRLETIIHSIDRENVKMYTKKISKMV 104 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +L S+RK KG+SQ E G L + T+S +E G T PE++ + + LD Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + + + N+ Sbjct: 61 LVMDVKAKESTKTEPLVMNR 80 >gi|256850687|ref|ZP_05556112.1| rad protein [Lactobacillus crispatus MV-1A-US] gi|256712555|gb|EEU27551.1| rad protein [Lactobacillus crispatus MV-1A-US] Length = 112 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RIK+ R + TQK++A N + V+ +E G SI L + ++SFD++ Sbjct: 2 NLAERIKNARINKHYTQKDLAELINVKSTTVSGWELGRNEPSIDTLKKLATKLDVSFDYL 61 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K+ R +K +Q + +L+ + ++T+S +E GR P I +K+ D+ Sbjct: 1 MNLAERIKNARINKHYTQKDLAELINVKSTTVSGWELGRNEPSIDTLKKLATKLDVSFDY 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|83589146|ref|YP_429155.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572060|gb|ABC18612.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 128 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 35/79 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK++R+ TQ+E+A SA+ +E+G + S D++ Sbjct: 3 IGKRIKELREKIGLTQEELAERVQISRSALANYESGYREPKGEILVRFAKALNTSTDFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLD 110 EV + D T K LD Sbjct: 63 GNEVKVDKTNDKTKKYELD 81 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG R+K +R+ G++Q E + + + S L+NYE G P+ + + + D+ Sbjct: 1 MSIGKRIKELREKIGLTQEELAERVQISRSALANYESGYREPKGEILVRFAKALNTSTDF 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + +K K N +KK + D+ Sbjct: 61 LLGNE-------VKVDKTNDKTKKYELDE 82 >gi|81427688|ref|YP_394685.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609327|emb|CAI54373.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 189 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R + TQ+ +A + ++ +ENG + + + N Y++S D + + Sbjct: 6 LKKRRIDLHLTQQAVADQLHTSRQTISNWENGKNYPDVPMLVAISNLYDLSLDDMLKQDT 65 Query: 96 I 96 Sbjct: 66 N 66 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK R D ++Q L T+SN+E G+ P++ I + LD + D Sbjct: 6 LKKRRIDLHLTQQAVADQLHTSRQTISNWENGKNYPDVPMLVAISNLYDLSLDDMLKQDT 65 Query: 178 VIVPKSIKRAKGNQSSKKS 196 + K + KK+ Sbjct: 66 NYLNKVANDYQLINQQKKT 84 >gi|256379464|ref|YP_003103124.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923767|gb|ACU39278.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 79 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 115 GARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++S+R + GM+Q E + +G+ T+ EQGR P ++ A +I +V K LD ++ Sbjct: 8 TNSIRSLRFARDGMTQAELAERVGVTRQTVIAIEQGRYSPSLEMAFRIARVFKVPLDDVF 67 Query: 174 FGDE 177 E Sbjct: 68 HYPE 71 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 36 IKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 I+ +R A TQ E+A V E G S S+ A + +++ D ++ Sbjct: 11 IRSLRFARDGMTQAELAERVGVTRQTVIAIEQGRYSPSLEMAFRIARVFKVPLDDVFHYP 70 Query: 95 VID 97 D Sbjct: 71 EGD 73 >gi|218281525|ref|ZP_03487954.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989] gi|218217314|gb|EEC90852.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989] Length = 255 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I ++R +Q E+A AV+ +ENG + L +++S + + Sbjct: 7 ILELRTQRGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSINTLL 62 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +R +GMSQ E + + + +S +E G T+P + + + +V ++ Sbjct: 1 MDTKQVILELRTQRGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|18313906|ref|NP_560573.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2] gi|18161474|gb|AAL64755.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2] Length = 516 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG+RI ++R+ + +A + +S + E G ++ + N ++F + Sbjct: 4 DVGSRIAELREKRGLSLTALAKLSGVSKSTLWGIERGEVVPTVSTLWNIANALGVTFGEL 63 Query: 91 YDGE 94 + Sbjct: 64 ITYD 67 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G+R+ +R+ +G+S KL G+ STL E+G +P + I Sbjct: 3 YDVGSRIAELREKRGLSLTALAKLSGVSKSTLWGIERGEVVPTVSTLWNIANALGVTFGE 62 Query: 172 IYFGDEVIVPKSIK 185 + D V+ + ++ Sbjct: 63 LITYDIVVKEEGVE 76 >gi|325961967|ref|YP_004239873.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468054|gb|ADX71739.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 191 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ VG R++ +R + T +A S ++ E+G ++ L L Sbjct: 1 MDDQMDDVLAAVGPRLRALRLSRETTLSALAEATGISVSTLSRLESGQRRPNLELLLPLA 60 Query: 81 NEYEISFDWIY 91 +++ D + Sbjct: 61 KAHQVPLDELV 71 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R + + + G+ STLS E G+ P ++ + + + LD + Sbjct: 11 AVGPRLRALRLSRETTLSALAEATGISVSTLSRLESGQRRPNLELLLPLAKAHQVPLDEL 70 Query: 173 Y 173 Sbjct: 71 V 71 >gi|302672043|ref|YP_003832003.1| AbrB family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302396516|gb|ADL35421.1| transcriptional regulator AbrB family [Butyrivibrio proteoclasticus B316] Length = 139 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +RK TQ+++A +V +E+G + L + + +S D + + Sbjct: 4 DNLVQMRKVLRMTQEDVAEKLGVTRQSVAKWESGESIPDLDKCKQLADIFGVSLDDLANY 63 Query: 94 EVIDR 98 E + Sbjct: 64 EPEEN 68 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L +RK M+Q + + LG+ +++ +E G +IP++ +++ + LD + Sbjct: 1 MFKDNLVQMRKVLRMTQEDVAEKLGVTRQSVAKWESGESIPDLDKCKQLADIFGVSLDDL 60 >gi|56707092|ref|YP_170689.1| hypothetical protein pNO33_03 [Streptomyces albulus] gi|56675911|dbj|BAD80773.1| hypothetical protein [Streptomyces albulus] Length = 155 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 22/135 (16%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R++++R N + ++A A V E G S R L + + + + Sbjct: 13 SRLRELRCQANLSVDQLAALAAISPETVRRVEKG-SQPSGRVLTALATALKTTTEDLAPS 71 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E L+ +R+ KG +Q E L+G+ +S E+G Sbjct: 72 EGAPT-------------------LRRLRQGKGRTQREIASLIGVSAQMVSQVERGVYGV 112 Query: 154 EIKPARKIKQVTKKH 168 + Sbjct: 113 SKPA--QWAAAYGVS 125 Score = 42.6 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +RL+ +R +S + L + T+ E+ + P + + K + + Sbjct: 10 FRSSRLRELRCQANLSVDQLAALAAISPETVRRVEK-GSQPSGRVLTALATALKTTTEDL 68 Query: 173 YFGDEVIVPKSIKRAKGN 190 + + +++ KG Sbjct: 69 APSEGAPTLRRLRQGKGR 86 >gi|325068074|ref|ZP_08126747.1| Cro/CI family transcriptional regulator putative [Actinomyces oris K20] Length = 146 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I + + ++RK +Q +G+ T++ +E P+I ++ Q +D + Sbjct: 1 MISSNIAALRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCIRLAQAFDVAIDDL 60 Query: 173 YFGDEVIVPKSIKRAK 188 GD V + K Sbjct: 61 VNGDTSFVSMLDRPGK 76 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + I +RK + TQ+ +A + +E + I + L ++++ D + Sbjct: 2 ISSNIAALRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCIRLAQAFDVAIDDLV 61 Query: 92 DGEV 95 +G+ Sbjct: 62 NGDT 65 >gi|254719638|ref|ZP_05181449.1| hypothetical protein Bru83_08855 [Brucella sp. 83/13] gi|265984647|ref|ZP_06097382.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837728|ref|ZP_07470596.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] gi|264663239|gb|EEZ33500.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306407184|gb|EFM63395.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] Length = 470 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR TQ MA S +NL E +++ L L + Y++ D + Sbjct: 9 GPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++G++Q + LG+ S L+ E+ + ++ K+ V K LD + Sbjct: 12 IRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 >gi|229822080|ref|YP_002883606.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567993|gb|ACQ81844.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 488 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 3/133 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + P VG RI+ R T ++A S ++L ENG + + Sbjct: 1 MAPAAETSPLTVGRRIRHFRTERRLTLDDLARLTGSAASQLSLVENGRREVRVSLLQQIA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR--LKSIRKDKGMSQIEFGKLLGM 138 ++S + + E RR + ++ A L ++R K + L+G+ Sbjct: 61 RALDVSPADLLEAEPPTRRAALEIALEEAQRGSLYATLGLPAVRASKRLPTEALEALVGL 120 Query: 139 PNSTLSNYEQGRT 151 +S L+ E + Sbjct: 121 -HSELARRESEAS 132 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R ++ ++ + +L G S LS E GR + ++I + + Sbjct: 14 RRIRHFRTERRLTLDDLARLTGSAASQLSLVENGRREVRVSLLQQIARALDVSPADLLEA 73 Query: 176 DEVIVPKSIKRA 187 + +++ A Sbjct: 74 EPPTRRAALEIA 85 >gi|261404033|ref|YP_003240274.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280496|gb|ACX62467.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 272 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I RK TQ+ +A AV+ +E G I L ++S D ++ Sbjct: 5 LAKNINRYRKERRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSIDKLF 64 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + + RK++ ++Q LG+ +S +E G+T+P+I ++ ++ +D + Sbjct: 4 MLAKNINRYRKERRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSIDKL 63 Query: 173 YFGDEVIVPKSIKRAKGNQSS 193 + P SI + Sbjct: 64 FGYSSTGKPISIYEEEYKTPE 84 >gi|323529073|ref|YP_004231225.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323386075|gb|ADX58165.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 212 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ +R T +++ A +S ++ E + +I A L N +S D ++ Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 92 DGEVIDR 98 + Sbjct: 95 APQKTPE 101 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ M+ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 37 EQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 >gi|323483673|ref|ZP_08089056.1| hypothetical protein HMPREF9474_00805 [Clostridium symbiosum WAL-14163] gi|323692636|ref|ZP_08106868.1| hypothetical protein HMPREF9475_01731 [Clostridium symbiosum WAL-14673] gi|323403009|gb|EGA95324.1| hypothetical protein HMPREF9474_00805 [Clostridium symbiosum WAL-14163] gi|323503333|gb|EGB19163.1| hypothetical protein HMPREF9475_01731 [Clostridium symbiosum WAL-14673] Length = 238 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +Y ++G+ ++ +RK T +++A + +S ++ +E G S I + Sbjct: 1 MSEYLMELGSILRKVRKLRGLTIQQLADKIQKSKSTLSKYERGEISIDILTIKEISRVLN 60 Query: 85 ISFDWIYDGEVIDRRY 100 IS D + G + Sbjct: 61 ISIDELLPGTADNSSQ 76 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G+ L+ +RK +G++ + + STLS YE+G +I ++I +V +D Sbjct: 6 MELGSILRKVRKLRGLTIQQLADKIQKSKSTLSKYERGEISIDILTIKEISRVLNISIDE 65 Query: 172 IYFG 175 + G Sbjct: 66 LLPG 69 >gi|322373053|ref|ZP_08047589.1| putative repressor protein [Streptococcus sp. C150] gi|321278095|gb|EFX55164.1| putative repressor protein [Streptococcus sp. C150] Length = 229 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 9/103 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K+IR+A +Q +A S+ +ENG + + L + ++ + Sbjct: 4 GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 I Y ++ + R + ++R K + + + + Sbjct: 64 EHEIVEVYLELNEENRQE---------ALRLTKALLEEQEAEK 97 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK IR+ +GMSQ K LG+ S+ N+E G+T P K + ++ + Sbjct: 1 MFSGQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 E++ + Q + + K Sbjct: 61 FLSEHEIVEVYLELNEENRQEALRLTK 87 >gi|317057449|ref|YP_004105916.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449718|gb|ADU23282.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 195 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I+ +R A TQK++A N + AV+ +E G + + L + + + Sbjct: 7 GALIRQLRLAAGLTQKQLAEKVNVSDKAVSKWECGNGAPDVSLLTDLAEIFGTDVNTLLS 66 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGAR 117 G D + + K++ Y Sbjct: 67 G-SKDINESEKGDMKKIRFYVCKDC 90 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 34/75 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D GA ++ +R G++Q + + + + + +S +E G P++ + ++ Sbjct: 1 MDQIKTGALIRQLRLAAGLTQKQLAEKVNVSDKAVSKWECGNGAPDVSLLTDLAEIFGTD 60 Query: 169 LDWIYFGDEVIVPKS 183 ++ + G + I Sbjct: 61 VNTLLSGSKDINESE 75 >gi|302337267|ref|YP_003802473.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634452|gb|ADK79879.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 222 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+RI+ R +N E+A S ++ E + S SI + + I +++ Sbjct: 14 LGSRIRAQRNKHNMKISELAELTGLTSSTISQVERALISPSIATLKKICDAMNIPISFLF 73 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 DG E D + E+ + I + LK Sbjct: 74 DGVEENDSQSEENVVTQDTTQADIPSHLKMF 104 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+++ R M E +L G+ +ST+S E+ P I +KI + +++ G Sbjct: 16 SRIRAQRNKHNMKISELAELTGLTSSTISQVERALISPSIATLKKICDAMNIPISFLFDG 75 Query: 176 DEVIVPKSIKR 186 E +S + Sbjct: 76 VEENDSQSEEN 86 >gi|326792010|ref|YP_004309831.1| cupin [Clostridium lentocellum DSM 5427] gi|326542774|gb|ADZ84633.1| Cupin 2 conserved barrel domain protein [Clostridium lentocellum DSM 5427] Length = 179 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +I +RK N TQ+E+A + ++ E G+ S SI + + + Sbjct: 2 DIGAKINQLRKKNGLTQEELADRCELSKGFISQVERGLTSPSIATLIDILECLGTNLKDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ + + + + Sbjct: 62 FNESSQEKIVFTKEDVFEKEDKDHNNMITWL 92 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA++ +RK G++Q E + +S E+G T P I I + +L Sbjct: 1 MDIGAKINQLRKKNGLTQEELADRCELSKGFISQVERGLTSPSIATLIDILECLGTNLKD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + S ++ + K+DK +N Sbjct: 61 FF------NESSQEKIVFTKEDVFEKEDKDHNN 87 >gi|323357780|ref|YP_004224176.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274151|dbj|BAJ74296.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 211 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 + + + VG RI+D+R+A + + +A SAV+ E G+ S+ Sbjct: 11 DPDAAVPGAPAEPAASVGARIRDLRQARGISARALAATLGISPSAVSQIERGVMQPSVSR 70 Query: 76 ALYLRNEYEISF 87 + + + + Sbjct: 71 LIAITDALGVPL 82 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 AR++ +R+ +G+S LG+ S +S E+G P + I L Sbjct: 29 ARIRDLRQARGISARALAATLGISPSAVSQIERGVMQPSVSRLIAITDALGVPL 82 >gi|225375548|ref|ZP_03752769.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] gi|225212527|gb|EEG94881.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] Length = 145 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R+ + +RK N+ +Q E+A ++ +E G I L + + Sbjct: 1 MRKEKIMFAENLIQLRKLNHMSQDELADQIGVSRQTLSKYETGESLPDIERCKRLADVFG 60 Query: 85 ISFDWIYDGEVID 97 ++ D + + E D Sbjct: 61 VTVDDLINYEKKD 73 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L +RK MSQ E +G+ TLS YE G ++P+I+ +++ V +D Sbjct: 6 IMFAENLIQLRKLNHMSQDELADQIGVSRQTLSKYETGESLPDIERCKRLADVFGVTVDD 65 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + ++ KG K +K Sbjct: 66 LINYEKKDSLGLEVPPKGKHIFGMVKVGEK 95 >gi|153954474|ref|YP_001395239.1| phage transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347355|gb|EDK33891.1| Predicted phage transcriptional regulator [Clostridium kluyveri DSM 555] Length = 268 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF--- 87 ++G IK IR TQKE+A + + + +EN S+ + ++ Sbjct: 2 NIGENIKRIRTQKGLTQKELAKSIHVTPTTIQNYENNRRKPSVDTLDKIAKVLGVTINSF 61 Query: 88 --DWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 ++ + E++ R + + + D + + Sbjct: 62 TFNYNFCYELLMRLIKVLNTENYFDLIEKESGI 94 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K IR KG++Q E K + + +T+ NYE R P + KI +V ++ Sbjct: 1 MNIGENIKRIRTQKGLTQKELAKSIHVTPTTIQNYENNRRKPSVDTLDKIAKVLGVTINS 60 Query: 172 IYF 174 F Sbjct: 61 FTF 63 >gi|325266458|ref|ZP_08133135.1| LexA family repressor/S24 family protease [Kingella denitrificans ATCC 33394] gi|324981901|gb|EGC17536.1| LexA family repressor/S24 family protease [Kingella denitrificans ATCC 33394] Length = 217 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 2/99 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G RIK +RK + TQ ++A +A++ +E + + L + F Sbjct: 2 NETIGQRIKQMRKERHLTQNDLAKKIQGVSHAAISQWEADLTKPNADNLYDLSLVFNCDF 61 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 W+ G + ++ + ++ P LK I ++ Sbjct: 62 AWLLRGGSGNVTQHELLDISKI-PVVSYDYLKEILENSN 99 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +RK++ ++Q + K + G+ ++ +S +E T P + V W+ Sbjct: 7 QRIKQMRKERHLTQNDLAKKIQGVSHAAISQWEADLTKPNADNLYDLSLVFNCDFAWLLR 66 Query: 175 G 175 G Sbjct: 67 G 67 >gi|254555453|ref|YP_003061870.1| transcription regulator [Lactobacillus plantarum JDM1] gi|254044380|gb|ACT61173.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 180 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI-SFDW 89 D+G RI+++R TQ+E+ + + ++ E+ S S+ + D+ Sbjct: 2 DIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPADF 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ D A+G R+K + Sbjct: 62 FAAEQPTHKVVYHPADQTTYDDEALGYRVKWL 93 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R++++R K ++Q E G+ + +S E ++ P ++ I +V Sbjct: 1 MDIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPAD 60 Query: 172 IYFGDEVIVP 181 + ++ Sbjct: 61 FFAAEQPTHK 70 >gi|300766976|ref|ZP_07076889.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179456|ref|YP_003923584.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495514|gb|EFK30669.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044947|gb|ADN97490.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 180 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI-SFDW 89 D+G RI+++R TQ+E+ + + ++ E+ S S+ + D+ Sbjct: 2 DIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPADF 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ D A+G R+K + Sbjct: 62 FAAEQPTHKVVYHPADQTTYDDEALGYRVKWL 93 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R++++R K ++Q E G+ + +S E ++ P ++ I +V Sbjct: 1 MDIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPAD 60 Query: 172 IYFGDEVIVP 181 + ++ Sbjct: 61 FFAAEQPTHK 70 >gi|229815066|ref|ZP_04445403.1| hypothetical protein COLINT_02107 [Collinsella intestinalis DSM 13280] gi|229809296|gb|EEP45061.1| hypothetical protein COLINT_02107 [Collinsella intestinalis DSM 13280] Length = 391 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 35/65 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R ++ M+Q + LLG+ +++ +E ++ PE+ K+ Q+ + LD Sbjct: 1 MSFRTNLQYLRAERRMTQEQLAMLLGVSRQSVTKWEAEKSYPEMDKLIKMCQIFECSLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVQGD 65 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R TQ+++A+ +V +E + + + +E S D + G+ Sbjct: 6 NLQYLRAERRMTQEQLAMLLGVSRQSVTKWEAEKSYPEMDKLIKMCQIFECSLDDLVQGD 65 Query: 95 VID 97 V Sbjct: 66 VSR 68 >gi|28377241|ref|NP_784133.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28270072|emb|CAD62972.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 180 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI-SFDW 89 D+G RI+++R TQ+E+ + + ++ E+ S S+ + D+ Sbjct: 2 DIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPADF 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ D A+G R+K + Sbjct: 62 FAAEQPTHKVVYHPADQTTYDDEALGYRVKWL 93 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R++++R K ++Q E G+ + +S E ++ P ++ I +V Sbjct: 1 MDIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPAD 60 Query: 172 IYFGDEVIVP 181 + ++ Sbjct: 61 FFAAEQPTHK 70 >gi|306825347|ref|ZP_07458687.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432285|gb|EFM35261.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 158 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +RK +N TQ E A ++++ +ENG+ S S + ++ +S+ I Sbjct: 2 IGENIKALRKTHNLTQPEFAKIVGISRNSLSRYENGISSVSTELIDRICKKFNVSYIDIV 61 Query: 92 DGEV 95 E Sbjct: 62 GEEK 65 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +K++RK ++Q EF K++G+ ++LS YE G + + +I + I Sbjct: 1 MIGENIKALRKTHNLTQPEFAKIVGISRNSLSRYENGISSVSTELIDRICKKFNVSYIDI 60 Query: 173 YFGDEVIVP 181 ++++ P Sbjct: 61 VGEEKMLTP 69 >gi|294852923|ref|ZP_06793596.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026] gi|294821512|gb|EFG38511.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026] Length = 470 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR TQ MA S +NL E +++ L L + Y++ D + Sbjct: 9 GPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++G++Q + LG+ S L+ E+ + ++ K+ V K LD + Sbjct: 12 IRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 >gi|258508090|ref|YP_003170841.1| phage-related transcriptional regulator Cro/CI family [Lactobacillus rhamnosus GG] gi|257148017|emb|CAR86990.1| Phage-related transcriptional regulator, Cro/CI family [Lactobacillus rhamnosus GG] Length = 112 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 G R+K++R TQ ++ N +++V+L+E + L + + +S D Sbjct: 1 MMSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTD 60 Query: 89 WIYDGEVIDRRYEDVT 104 ++ + + E + Sbjct: 61 FLLGVTDVRSKPEQID 76 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + G RLK +R +K M+Q + GK++ + +++S YE+ P+ +K+ D Sbjct: 1 MMSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTD 60 Query: 171 WIYF-GDEVIVPKSIKRAKGNQSS 193 ++ D P+ I + + Sbjct: 61 FLLGVTDVRSKPEQIDISDSKNDT 84 >gi|21911121|ref|NP_665389.1| hypothetical protein SpyM3_1585 [Streptococcus pyogenes MGAS315] gi|28895194|ref|NP_801544.1| hypothetical protein SPs0282 [Streptococcus pyogenes SSI-1] gi|21905331|gb|AAM80192.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28810439|dbj|BAC63377.1| hypothetical protein [Streptococcus pyogenes SSI-1] Length = 195 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ RK +Q+E+ +++ +EN I L L +++S D + Sbjct: 2 EIGQQMIRYRKQQALSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++SN+E +T P+I + Q+ + LD Sbjct: 1 MEIGQQMIRYRKQQALSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTK 86 >gi|266625083|ref|ZP_06118018.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288863021|gb|EFC95319.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 151 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + +++G R++ IR N TQ +MA ++ E G S ++ L Sbjct: 45 NKEELLREMGNRLRQIRLEKNWTQDKMAECLGITKAFYGKIERGESSIALEKLALLNETM 104 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +I +++ GE I + + R Y++ +K Sbjct: 105 DIDLNYLITGETIPVLPINFQDVPREKRYSMEQLIKYA 142 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RL+ IR +K +Q + + LG+ + E+G + ++ + + L+++ Sbjct: 52 EMGNRLRQIRLEKNWTQDKMAECLGITKAFYGKIERGESSIALEKLALLNETMDIDLNYL 111 Query: 173 YFGDEVIV 180 G+ + V Sbjct: 112 ITGETIPV 119 >gi|169344519|ref|ZP_02865488.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] gi|169297439|gb|EDS79548.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] Length = 141 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++K++RK N +Q+++A N A++ E+G I + LR + +S D Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKLESGKAYPDIDNLILLRKIFGVSLD 59 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK +RK+K +SQ + K L + +S E G+ P+I ++++ LD Sbjct: 1 MGFNNKLKELRKEKNISQEQLAKELNISRQAISKLESGKAYPDIDNLILLRKIFGVSLD 59 >gi|163854504|ref|YP_001628802.1| putative DNA-binding protein [Bordetella petrii DSM 12804] gi|163258232|emb|CAP40531.1| putative DNA-binding protein [Bordetella petrii] Length = 136 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEI 85 + + G R++ R TQKE+A + +SA+ +E+G + + L ++ Sbjct: 5 RRMETFGQRVRGARLRFGWTQKELASVSGLTQSAIGNYESGQRTEPTSAALIKLAQALDV 64 Query: 86 SFDWIYDGEVIDRRYEDVT 104 + +W+ G+ + Sbjct: 65 TPEWLRQGKEAKDGPSKKS 83 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHL 169 G R++ R G +Q E + G+ S + NYE RT P K+ Q Sbjct: 7 METFGQRVRGARLRFGWTQKELASVSGLTQSAIGNYESGQRTEPTSAALIKLAQALDVTP 66 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 +W+ G E S K +++ K Sbjct: 67 EWLRQGKEAKDGPSKKSLSYMPKARQQK 94 >gi|150378020|ref|YP_001314615.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032567|gb|ABR64682.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 219 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 22/155 (14%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P +G ++ RK T ++A ++ ENG S S+ Sbjct: 18 QDPHAVREPRANNLEMAIGHEVRTYRKKLGITVADLAQATGMSIGMLSKIENGNISPSLT 77 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 L + + G V + G++ G Sbjct: 78 TLQALSKALGVPLTAFFRGFEEPNSASFVKAGE------------------GVNLERRGT 119 Query: 135 LLGMPNSTLSNYEQGRT----IPEIKPARKIKQVT 165 G S L + E + P + + Sbjct: 120 RAGHHYSLLGHIENNTSGVIVEPYLITLNASSDIF 154 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG +++ RK G++ + + GM LS E G P + + + + L Sbjct: 33 MAIGHEVRTYRKKLGITVADLAQATGMSIGMLSKIENGNISPSLTTLQALSKALGVPLTA 92 Query: 172 IYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + G +E +K +G ++ + Sbjct: 93 FFRGFEEPNSASFVKAGEGVNLERRGTRAGHH 124 >gi|299132893|ref|ZP_07026088.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593030|gb|EFI53230.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 118 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 31/86 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Q + R+++ R +Q +A A ++V+ FE+G S L + Sbjct: 3 EDQATEIFSKRLREARDLRGLSQALLAAKAGLPPASVSHFESGPRKPSFDNLKALAKALD 62 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 ++ D++ + + D Sbjct: 63 VTTDYLLGRSETPDASAETVGRLHRD 88 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ R +G+SQ G+P +++S++E G P + + + D++ Sbjct: 10 FSKRLREARDLRGLSQALLAAKAGLPPASVSHFESGPRKPSFDNLKALAKALDVTTDYLL 69 Query: 174 FGDEVIVPKSIKRAKGNQS 192 E + + ++ Sbjct: 70 GRSETPDASAETVGRLHRD 88 >gi|298250820|ref|ZP_06974624.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297548824|gb|EFH82691.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 126 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 50/117 (42%), Gaps = 1/117 (0%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R+ + +Q+E+A + ++ +ENG + Y L YE ++ + Sbjct: 5 LKRARELSGYSQREIADALGVAVTTISRWENGHVESMPYYRRKLAALYEKKPGELFPALM 64 Query: 96 IDRRYEDVTNKKRLDPYAIG-ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 I + + +++ + L+ R+ + SQ + + +G ++S +EQ Sbjct: 65 IGKMIDLPPEEQQPEGRGKHPNFLRRERRLRNWSQEDLAEKIGAARGSISRWEQKEQ 121 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R+ G SQ E LG+ +T+S +E G RK+ + +K ++ Sbjct: 1 MKNVLKRARELSGYSQREIADALGVAVTTISRWENGHVESMPYYRRKLAALYEKKPGELF 60 >gi|308273674|emb|CBX30276.1| hypothetical protein N47_D30850 [uncultured Desulfobacterium sp.] Length = 433 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + Q D+GTR+K+IR +Q E+A S ++ E+ S+ + + Sbjct: 246 KRTQTQLDLGTRLKEIRSKRGFSQTELAKLIGVTSSTISQIESNQIYPSLPALIKIAETL 305 Query: 84 EISFDWIY 91 + + Sbjct: 306 SVKISSFF 313 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK IR +G SQ E KL+G+ +ST+S E + P + KI + + + + Sbjct: 258 LKEIRSKRGFSQTELAKLIGVTSSTISQIESNQIYPSLPALIKIAETLSVKISSFFGELD 317 Query: 178 VIVPKSI 184 + + + Sbjct: 318 TVSEQVV 324 >gi|259501148|ref|ZP_05744050.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|302190406|ref|ZP_07266660.1| DNA-binding protein [Lactobacillus iners AB-1] gi|309804359|ref|ZP_07698435.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|312871026|ref|ZP_07731129.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325913257|ref|ZP_08175625.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|259167842|gb|EEW52337.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|308163571|gb|EFO65842.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|311093521|gb|EFQ51862.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477360|gb|EGC80504.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 210 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++ R TQ+E+A +AV +E G + + + ++ D++ Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLL 62 Query: 92 DGEV 95 D + Sbjct: 63 DKDN 66 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 37/71 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++++ R + G++Q E +++ + + ++ +E GR +P++ + I +D++ Sbjct: 5 EKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLLDK 64 Query: 176 DEVIVPKSIKR 186 D I IK+ Sbjct: 65 DNAIDLSIIKK 75 >gi|238023508|ref|YP_002907740.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237878173|gb|ACR30505.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 201 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG I+ +R T +++ A +S ++ E + +I A L N IS D Sbjct: 22 PRVGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDE 81 Query: 90 IY 91 ++ Sbjct: 82 LF 83 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 26 ETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 83 >gi|237733365|ref|ZP_04563846.1| predicted protein [Mollicutes bacterium D7] gi|229383577|gb|EEO33668.1| predicted protein [Coprobacillus sp. D7] Length = 79 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 36/77 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R++ +R +N TQ E++I S++ +E + + L N Y++S D++ Sbjct: 2 NIGKRLRKLRIEHNLTQNEVSILTGIKRSSIASYELNEQLPPVDKLIQLANLYKVSLDYL 61 Query: 91 YDGEVIDRRYEDVTNKK 107 + + R K Sbjct: 62 CGLDNSEIRNTRNEKSK 78 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RL+ +R + ++Q E L G+ S++++YE +P + ++ + K LD+ Sbjct: 1 MNIGKRLRKLRIEHNLTQNEVSILTGIKRSSIASYELNEQLPPVDKLIQLANLYKVSLDY 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|258654157|ref|YP_003203313.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557382|gb|ACV80324.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 187 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 31/83 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R + +A A + +++ ENG + ++ L N W+ Sbjct: 10 IGERLRAARTEQGLSVGGLAQAAGIGKGSLSEIENGTRNPTLSTLYGLANALGRPLSWLL 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 +V + + LD A Sbjct: 70 AEQVGAQVSSPGIAARLLDTSAT 92 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL++ R ++G+S + G+ +LS E G P + + + L W+ Sbjct: 12 ERLRAARTEQGLSVGGLAQAAGIGKGSLSEIENGTRNPTLSTLYGLANALGRPLSWLL 69 >gi|295837554|ref|ZP_06824487.1| transcriptional regulator [Streptomyces sp. SPB74] gi|197698364|gb|EDY45297.1| transcriptional regulator [Streptomyces sp. SPB74] Length = 226 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +R A + +E+A AN +S ++ ENG ++ + L + S D + + Sbjct: 14 KRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQLVET 73 Query: 94 EVIDRRYEDVTN 105 D V + Sbjct: 74 ASDDVVSNPVVD 85 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + + STLS E G+ + + + LD + Sbjct: 13 RKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQLVE 72 Query: 175 --GDEVIVPKSIKRAKGNQ 191 D+V+ + A+G Sbjct: 73 TASDDVVSNPVVDGARGQM 91 >gi|114765327|ref|ZP_01444444.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114542307|gb|EAU45336.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 206 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 E D+G R++++RKA + T ++ A A S ++ ENG S + L Sbjct: 16 GEEASAEPLDLGARVRELRKARDWTLEQAAREAGLARSTLSKIENGQMSPTYDALKKLAV 75 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKR 108 I ++ ++ + + + Sbjct: 76 GLGIGVPQLFTPPKKEQVSGRMVHTRE 102 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + + + + G+ STLS E G+ P +K+ + ++ Sbjct: 28 ARVRELRKARDWTLEQAAREAGLARSTLSKIENGQMSPTYDALKKLAVGLGIGVPQLFT 86 >gi|78043621|ref|YP_360682.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995736|gb|ABB14635.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 127 Score = 71.9 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 30/85 (35%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI++ R+ +++E A + V E G S+ + + +S D+ Sbjct: 6 KAIGQRIREEREKLELSREEFAEILGLSDYYVGQLERGERQMSLPVLVNIAQCLHVSLDY 65 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAI 114 + G N + Sbjct: 66 LIFGSTPFEPSGVQENISFYNFLQN 90 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 37/80 (46%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ AIG R++ R+ +S+ EF ++LG+ + + E+G + I Q Sbjct: 1 MEINTKAIGQRIREEREKLELSREEFAEILGLSDYYVGQLERGERQMSLPVLVNIAQCLH 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 LD++ FG P ++ Sbjct: 61 VSLDYLIFGSTPFEPSGVQE 80 >gi|331085520|ref|ZP_08334605.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407758|gb|EGG87256.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 134 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 32/86 (37%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G I IRK TQ E+A + AV+ +E + + L +S D Sbjct: 4 QTLGVMIASIRKERGMTQLELAEKMGVTDKAVSKWERDLSCPDVSSIPQLAEILGVSVDE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIG 115 + + I + N K + A Sbjct: 64 LMQVKDITKETSSQDNIKGIIDTAFK 89 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 41/78 (52%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G + SIRK++GM+Q+E + +G+ + +S +E+ + P++ ++ ++ Sbjct: 1 MKKQTLGVMIASIRKERGMTQLELAEKMGVTDKAVSKWERDLSCPDVSSIPQLAEILGVS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + ++ S + Sbjct: 61 VDELMQVKDITKETSSQD 78 >gi|239631283|ref|ZP_04674314.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525748|gb|EEQ64749.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 112 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 G R+K++R TQ ++ N +++V+L+E + L + +S D Sbjct: 1 MMSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLARYFNVSTD 60 Query: 89 WIYDGEVIDRRYEDVT 104 ++ I + E + Sbjct: 61 FLLGVTDIRSKPEQID 76 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + G RLK +R +K M+Q + GK++ + +++S YE+ P+ +K+ + D Sbjct: 1 MMSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLARYFNVSTD 60 Query: 171 WIYFGDEVI-VPKSIKRAKGNQSS 193 ++ ++ P+ I + + Sbjct: 61 FLLGVTDIRSKPEQIDISDSKNDT 84 >gi|118472941|ref|YP_890853.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118174228|gb|ABK75124.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 472 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ + TQ +A S +N EN ++ L L +++ + Sbjct: 6 IGPRLRRLREEHGLTQVALARALGLSTSYINQLENDQRPVTVPVLLSLSERFDLPTHYF- 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 D R +D A A+++ + Sbjct: 65 -TPDSDARLVSDLRDILVDSAATQAQIEEL 93 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG RL+ +R++ G++Q+ + LG+ S ++ E + + + + Sbjct: 1 MAKTFIGPRLRRLREEHGLTQVALARALGLSTSYINQLENDQRPVTVPVLLSLSERFDLP 60 Query: 169 LDWI 172 + Sbjct: 61 THYF 64 >gi|227545435|ref|ZP_03975484.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri CF48-3A] gi|300908481|ref|ZP_07125944.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri SD2112] gi|227184576|gb|EEI64647.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri CF48-3A] gi|300893888|gb|EFK87246.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri SD2112] Length = 293 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R +Q E+A AV+ +ENG SI + L + +S D + G Sbjct: 8 QLLKLRTEKQLSQAELATRLFVPRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLILGT 67 Query: 95 VIDRRYEDVTNK 106 + N Sbjct: 68 NDFNQPVVKLNN 79 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 32/75 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 PY+ +L +R +K +SQ E L +P +S +E G P I + +V LD Sbjct: 2 PYSFPHQLLKLRTEKQLSQAELATRLFVPRQAVSKWENGDAEPSIDKLILLAKVFNVSLD 61 Query: 171 WIYFGDEVIVPKSIK 185 + G +K Sbjct: 62 RLILGTNDFNQPVVK 76 >gi|160942794|ref|ZP_02090035.1| hypothetical protein FAEPRAM212_00271 [Faecalibacterium prausnitzii M21/2] gi|158445959|gb|EDP22962.1| hypothetical protein FAEPRAM212_00271 [Faecalibacterium prausnitzii M21/2] Length = 134 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 E +T E++ K + +K+ R TQ+ +A AV+ +ENG + Sbjct: 47 EKPPKLTEEVKIVRKSLSEMLKENRTRCKMTQEFVAETIGVSRQAVSKWENGTSEPNTSN 106 Query: 76 ALYLRNEYEISFDWIYDG 93 + L Y I + + G Sbjct: 107 LMALARLYGIPAEDLLKG 124 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 34/88 (38%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + +T + ++ ++ LK R M+Q + +G+ +S +E G + P Sbjct: 47 EKPPKLTEEVKIVRKSLSEMLKENRTRCKMTQEFVAETIGVSRQAVSKWENGTSEPNTSN 106 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 + ++ + + G E + K Sbjct: 107 LMALARLYGIPAEDLLKGVESALEAQEK 134 >gi|99081574|ref|YP_613728.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99037854|gb|ABF64466.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 133 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 2/105 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R++ TQ ++A +S + +E + L +S W+ Sbjct: 16 FGDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKLSTLSGILNVSMSWLL 75 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 GE + + D AI L+S+R++ Q E L Sbjct: 76 TGEGDELSAPNEDTLGE-DMAAIARELRSLREELR-QQAERAGRL 118 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G R+ + R+ GM+Q + + +G+ STL +EQ + P + + + Sbjct: 12 DAATFGDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKLSTLSGILNVSM 71 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 W+ G+ + + G + +++ Sbjct: 72 SWLLTGEGDELSAPNEDTLGEDMAAIARE 100 >gi|332297377|ref|YP_004439299.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180480|gb|AEE16168.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 195 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 42/89 (47%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + + + ++ G +++ +R+ T K +A A ES V+ E S +I L L Sbjct: 1 MTSTQNKRVPYRFGEKLRAVRERKGYTLKVVAQRAGVSESLVSQIERNKVSPAIDTLLML 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 + +I+ +++++ +R + + +R Sbjct: 61 ADVLDINLEFLFEEYRRNRPVQVIRANER 89 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 46/101 (45%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + + + PY G +L+++R+ KG + + G+ S +S E+ + P I + Sbjct: 1 MTSTQNKRVPYRFGEKLRAVRERKGYTLKVVAQRAGVSESLVSQIERNKVSPAIDTLLML 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 V +L++++ P + RA ++ ++++ + Sbjct: 61 ADVLDINLEFLFEEYRRNRPVQVIRANERRTVEEAEVIYEE 101 >gi|312865715|ref|ZP_07725939.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098836|gb|EFQ57056.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 116 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R TQKE+A N + ENG S +++S D++ Sbjct: 4 ERLKSLRLEAGLTQKEIATKLNMTQPQYARTENGGRKPSSETLNKFAEFFDVSTDYLLGN 63 Query: 94 EVIDRRYE 101 R+ Sbjct: 64 SNRKRKIP 71 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLKS+R + G++Q E L M + E G P + K + D++ Sbjct: 1 MFTERLKSLRLEAGLTQKEIATKLNMTQPQYARTENGGRKPSSETLNKFAEFFDVSTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|47565513|ref|ZP_00236554.1| transcriptional regulator, putative [Bacillus cereus G9241] gi|47557503|gb|EAL15830.1| transcriptional regulator, putative [Bacillus cereus G9241] Length = 181 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRPHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRPHKRKK 83 >gi|259649410|dbj|BAI41572.1| hypothetical phage protein [Lactobacillus rhamnosus GG] Length = 111 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++R TQ ++ N +++V+L+E + L + + +S D++ Sbjct: 3 FGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTDFLL 62 Query: 92 DGEVIDRRYEDVT 104 + + E + Sbjct: 63 GVTDVRSKPEQID 75 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G RLK +R +K M+Q + GK++ + +++S YE+ P+ +K+ D+ Sbjct: 1 MSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTDF 60 Query: 172 IYF-GDEVIVPKSIKRAKGNQSS 193 + D P+ I + + Sbjct: 61 LLGVTDVRSKPEQIDISDSKNDT 83 >gi|325126457|gb|ADY85787.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 119 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 36/78 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++D+R+ +Q+E+A+ + ++ +E G ++ + N + +S + I Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVSRNSIL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 G ++ ++ L Sbjct: 66 AGLPVEMLEQEDRRVVDL 83 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG L+ +R+ +GMSQ E LG+ T+SN+E GR +P +K KI + Sbjct: 1 MEKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60 Query: 169 LDWIYFG 175 + I G Sbjct: 61 RNSILAG 67 >gi|288904231|ref|YP_003429452.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288730956|emb|CBI12500.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 175 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 41 KANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRY 100 K N +Q+E+A ++ +E G I L + + IS D + G+V ++ Sbjct: 3 KGKNLSQEELAEKLYVSRQTISNWERGKTYPDINSLLLIATYFGISLDNLIKGDVDIMKH 62 Query: 101 EDVTNK 106 + ++ Sbjct: 63 QVDQSQ 68 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 123 KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPK 182 K K +SQ E + L + T+SN+E+G+T P+I I LD + GD I+ Sbjct: 3 KGKNLSQEELAEKLYVSRQTISNWERGKTYPDINSLLLIATYFGISLDNLIKGDVDIMKH 62 Query: 183 SIKRAKGNQ 191 + +++ + Sbjct: 63 QVDQSQFKK 71 >gi|86748264|ref|YP_484760.1| transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86571292|gb|ABD05849.1| transcriptional regulator [Rhodopseudomonas palustris HaA2] Length = 232 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 30/75 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R + +G +I+ IR+ + + +++ +N ++ ENG S S+ + Sbjct: 44 ERSLERALGAKIRAIRRERDLSVSDLSSASNISAGMMSKIENGQISPSLSTLQSIAGALN 103 Query: 85 ISFDWIYDGEVIDRR 99 + ++ R Sbjct: 104 VPLSLLFAASEQRRD 118 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+GA++++IR+++ +S + + +S E G+ P + + I L + Sbjct: 50 ALGAKIRAIRRERDLSVSDLSSASNISAGMMSKIENGQISPSLSTLQSIAGALNVPLSLL 109 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKS 196 + E S RAK + ++ Sbjct: 110 FAASEQRRDCSFVRAKQGVAIERR 133 >gi|85707344|ref|ZP_01038427.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668152|gb|EAQ23030.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 211 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Q D+G R+K +R+A T + A S ++ ENG S S + + Y Sbjct: 19 ERHQLRADLGARMKSVRQACGYTLEVAAQRTGLALSTIHKIENGRVSPSYENLIKIARAY 78 Query: 84 EISFDWIYDGEVIDRRYEDVTNKK 107 +I + ++ + + +T + Sbjct: 79 DIGMERLFSADHDATQTTRMTVTR 102 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR+KS+R+ G + + G+ ST+ E GR P + KI + ++ ++ Sbjct: 29 ARMKSVRQACGYTLEVAAQRTGLALSTIHKIENGRVSPSYENLIKIARAYDIGMERLFSA 88 Query: 176 D 176 D Sbjct: 89 D 89 >gi|172058533|ref|YP_001814993.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991054|gb|ACB61976.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 181 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +IK++R TQ+E+ + + ++ E + S SI L IS Sbjct: 1 MRTIGNKIKNLRLQKGLTQEELGERTDLSKGYISQIEREISSPSIETLFSLLEVLGISAK 60 Query: 89 WIYDGEVIDRRYEDVTNK 106 +D + ++++ Sbjct: 61 DFFDEDTLNQKVVYSQKD 78 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++K++R KG++Q E G+ + +S E+ + P I+ + +V Sbjct: 1 MRTIGNKIKNLRLQKGLTQEELGERTDLSKGYISQIEREISSPSIETLFSLLEVLGISAK 60 Query: 171 WIYFGDEVIVPKSIKRAK 188 +F ++ + K + K Sbjct: 61 D-FFDEDTLNQKVVYSQK 77 >gi|309777434|ref|ZP_07672392.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914830|gb|EFP60612.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 183 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +RKA TQ+++A N ++A++ +E G + L E S D++ Sbjct: 3 NRIRQVRKAKKLTQQDIARKLNINQTAISQWERGSTVPKNEKLIQLCEILETSSDYLLGI 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIR-----KDKGMSQIEFGKLLGM 138 + + + +++ + + M+ +LL + Sbjct: 63 SDDPAFRDAESKAVVNTIGPVMESIEAACVNANAECQDMTLEILNELLHL 112 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 35/60 (58%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +RK K ++Q + + L + + +S +E+G T+P+ + ++ ++ + D++ Sbjct: 1 MENRIRQVRKAKKLTQQDIARKLNINQTAISQWERGSTVPKNEKLIQLCEILETSSDYLL 60 >gi|229060141|ref|ZP_04197511.1| Transcriptional regulator, XRE [Bacillus cereus AH603] gi|228719181|gb|EEL70791.1| Transcriptional regulator, XRE [Bacillus cereus AH603] Length = 107 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 GTR+ +RK Q++MA + ++E G + L +E+S D++ Sbjct: 2 FGTRLHTLRKERKLRQEDMAKQLGIARTTYAMYEQGNREPDYNTLIKLATFFEVSIDYLL 61 Query: 92 DGEVIDRRYEDVTN 105 I + + Sbjct: 62 GTTKIRQVTDIQDP 75 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL ++RK++ + Q + K LG+ +T + YEQG P+ K+ + +D++ Sbjct: 1 MFGTRLHTLRKERKLRQEDMAKQLGIARTTYAMYEQGNREPDYNTLIKLATFFEVSIDYL 60 Query: 173 YFGDEVIVPKSIKR 186 ++ I+ Sbjct: 61 LGTTKIRQVTDIQD 74 >gi|289422857|ref|ZP_06424689.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L] gi|289156719|gb|EFD05352.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L] Length = 215 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 43/105 (40%) Query: 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 Y I +R D+G +IK +R TQ+E+A + ++ EN + S SI Sbjct: 24 YYARIGGALRAINMDIGEKIKRLRTGKQLTQEELANRCELSKGFISQVENNLTSPSIATL 83 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + + ++ ++ + ++ +G + + Sbjct: 84 IDILDILGTNLKEFFSEDLNEKITFKQDDMFEVEDEDLGYTFRWL 128 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 2/88 (2%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 W+ G I+ Y + R IG ++K +R K ++Q E + +S E Sbjct: 16 WLMIG--INLYYARIGGALRAINMDIGEKIKRLRTGKQLTQEELANRCELSKGFISQVEN 73 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGD 176 T P I I + +L + D Sbjct: 74 NLTSPSIATLIDILDILGTNLKEFFSED 101 >gi|331092206|ref|ZP_08341036.1| hypothetical protein HMPREF9477_01679 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401978|gb|EGG81552.1| hypothetical protein HMPREF9477_01679 [Lachnospiraceae bacterium 2_1_46FAA] Length = 347 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 29/79 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ RK TQ+EMA AVN +ENG I + IS D + Sbjct: 2 KIGEVIRKYRKEKQMTQEEMAEYLGVTTPAVNKWENGNSMPDISLLAPIARLLGISTDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + E + L Sbjct: 62 LSYQNELTDKEISRKIELL 80 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK+K M+Q E + LG+ ++ +E G ++P+I I ++ D Sbjct: 1 MKIGEVIRKYRKEKQMTQEEMAEYLGVTTPAVNKWENGNSMPDISLLAPIARLLGISTDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + K I R + K + + Sbjct: 61 LLSYQNELTDKEISRKIELLAEKMKTESYED 91 >gi|260662345|ref|ZP_05863240.1| predicted protein [Lactobacillus fermentum 28-3-CHN] gi|260553036|gb|EEX25979.1| predicted protein [Lactobacillus fermentum 28-3-CHN] Length = 188 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 11/141 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +RK N TQK+ A +E V+ E G+ S S + + + ++ + + Sbjct: 30 IGQNIRRLRKDNGYTQKQFAEKLETIEQTVSKIERGVFSPSTDSLMNICTIFGVTPNDLM 89 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI----GARLKSIRKDKGMSQIEFGKLLG--MPNSTLSN 145 + ++ D +A ++ + +Q + + G + Sbjct: 90 LDTNKLQAVNAQVIDQQADSFAALTKHMTEIQQL-----FAQADRARDAGDDGDERAIIQ 144 Query: 146 YEQGRTIPEIKPARKIKQVTK 166 P I R++ + Sbjct: 145 RIIDLYTPRIDDLRRVAEWLN 165 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +RKD G +Q +F + L T+S E+G P I + + + Sbjct: 32 QNIRRLRKDNGYTQKQFAEKLETIEQTVSKIERGVFSPSTDSLMNICTIFGVTPNDLMLD 91 >gi|255658093|ref|ZP_05403502.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849858|gb|EEX69865.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 143 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +RK +Q E+A +A N +E+G + S R L Y +S D+I Sbjct: 6 QRLRALRKREGLSQTEVARILGITRTAYNKYESGASAPS-RKLRELAQLYHVSTDYILGE 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 E + + L Sbjct: 65 EDALAEKLREADARTSSHLRKYLDL 89 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RL+++RK +G+SQ E ++LG+ + + YE G + P K R++ Q+ D Sbjct: 1 MNLTAQRLRALRKREGLSQTEVARILGITRTAYNKYESGASAPSRK-LRELAQLYHVSTD 59 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 +I G+E + + ++ A SS K Sbjct: 60 YIL-GEEDALAEKLREADARTSSHLRK 85 >gi|220931592|ref|YP_002508500.1| helix-turn-helix domain protein [Halothermothrix orenii H 168] gi|219992902|gb|ACL69505.1| helix-turn-helix domain protein [Halothermothrix orenii H 168] Length = 301 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +R++ +RK QK++A ++ + +E + + L + + +S D++ Sbjct: 4 FASRLRSLRKEKKLRQKDLAGALGVAQTTIANYEQNLRFPNQDILNKLADYFNVSIDYLL 63 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +A L+S+RK+K + Q + LG+ +T++NYEQ P K+ Sbjct: 1 MDTFASR--LRSLRKEKKLRQKDLAGALGVAQTTIANYEQNLRFPNQDILNKLADYFNVS 58 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +D++ + P + K N + ++ K Sbjct: 59 IDYLLGRSCLRQPTNFTSFKNNHITGENINYSK 91 >gi|309777026|ref|ZP_07671995.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915236|gb|EFP61007.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 147 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K++R+ NN TQ+++A AV+ +E G + L +++S + + Sbjct: 7 LKNLREKNNLTQEQLAERVQVTRQAVSRWETGETQPNTDTLKLLSRVFDVSINTLL 62 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK++R+ ++Q + + + + +S +E G T P + + +V ++ Sbjct: 1 MEIQGILKNLREKNNLTQEQLAERVQVTRQAVSRWETGETQPNTDTLKLLSRVFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|291541572|emb|CBL14682.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 229 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 10/94 (10%), Positives = 32/94 (34%), Gaps = 4/94 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++++R N K+ + + +E + + L + Y+ S D++ Sbjct: 2 LGEKLRELRTELNLNMKQASEKLGISYTTYVGYEKNEREPNSETLIKLADFYKCSVDYLI 61 Query: 92 DGEVIDRRYEDVTNKKRLDP----YAIGARLKSI 121 + + + Y ++ + Sbjct: 62 GKTIRLNFIPHEIEEAEIKCPLCDYDYVHFIRVL 95 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +L+ +R + ++ + + LG+ +T YE+ P + K+ K +D++ Sbjct: 1 MLGEKLRELRTELNLNMKQASEKLGISYTTYVGYEKNEREPNSETLIKLADFYKCSVDYL 60 Query: 173 Y 173 Sbjct: 61 I 61 >gi|311068514|ref|YP_003973437.1| putative Xre family transcriptional regulator [Bacillus atrophaeus 1942] gi|310869031|gb|ADP32506.1| putative transcriptional regulator (Xre family); phage SPbeta [Bacillus atrophaeus 1942] Length = 108 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R + +Q++MA +E G + L N +S D++ G Sbjct: 4 ERLKKCRTSKGYSQQQMADFLGITRQGYGKYETGKAEPDLTTLTKLSNILGVSTDFLLKG 63 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK R KG SQ + LG+ YE G+ P++ K+ + D++ Sbjct: 1 MFRERLKKCRTSKGYSQQQMADFLGITRQGYGKYETGKAEPDLTTLTKLSNILGVSTDFL 60 Query: 173 YFG 175 G Sbjct: 61 LKG 63 >gi|308176134|ref|YP_003915540.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743597|emb|CBT74569.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 487 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 35/97 (36%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + + +G RI+ +RK+ T +++ + S ++L ENG + L Sbjct: 10 SEDTELDAIALGRRIRFLRKSKQLTLDDVSTLVDTAPSQLSLIENGKREPKLSLLKSLAG 69 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + D + E RR +R + L Sbjct: 70 ALGVGVDDLLGTEPPSRRAALEIELERAQRGPLYESL 106 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 + LD A+G R++ +RK K ++ + L+ S LS E G+ P++ + + Sbjct: 10 SEDTELDAIALGRRIRFLRKSKQLTLDDVSTLVDTAPSQLSLIENGKREPKLSLLKSLAG 69 Query: 164 VTKKHLDWIYFGD 176 +D + + Sbjct: 70 ALGVGVDDLLGTE 82 >gi|302335525|ref|YP_003800732.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319365|gb|ADK67852.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 398 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 12/109 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+ I R+ TQ+E+A ++AV+ +E G + + + ++ D ++ Sbjct: 7 IGSVIARERRLRGDTQQELAERLGVSKAAVSKWEVGQSIPDVTLLPRIAAYFSLTLDELF 66 Query: 92 ------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 E + Y ++ K D + RL+ Q + Sbjct: 67 GYRSVLSNEEVATLYAELRAKAARDQSSALDRLREA------VQDHYAD 109 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 38/81 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + R+ +G +Q E + LG+ + +S +E G++IP++ +I LD ++ Sbjct: 11 IARERRLRGDTQQELAERLGVSKAAVSKWEVGQSIPDVTLLPRIAAYFSLTLDELFGYRS 70 Query: 178 VIVPKSIKRAKGNQSSKKSKK 198 V+ + + +K ++ Sbjct: 71 VLSNEEVATLYAELRAKAARD 91 >gi|253573993|ref|ZP_04851335.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846470|gb|EES74476.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + VG RI++ RK N TQ+++A A+ S + E G + S+ + ++ Sbjct: 2 NLPEIVGKRIREYRKQKNWTQEQLAEAASLHYSYIGGVERGDRNISLETLEKIAVALDVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 ++ EV+ + + + +L + Sbjct: 62 AGDLFRTEVVLDKQQLLDEHMKLVSSRSAEEI 93 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 32/84 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK K +Q + + + S + E+G ++ KI ++ Sbjct: 9 KRIREYRKQKNWTQEQLAEAASLHYSYIGGVERGDRNISLETLEKIAVALDVPAGDLFRT 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + V+ + + S +S ++ Sbjct: 69 EVVLDKQQLLDEHMKLVSSRSAEE 92 >gi|118580325|ref|YP_901575.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503035|gb|ABK99517.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 107 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R + +G RI+++RK TQ+++A + ++ E G S+ L + Sbjct: 1 MRTANELLGLRIRELRKRAGMTQEQLAELLGIDQKHMSRIELGKSYPSLDRLLKIAVVVN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +++ ++ + + LK I Sbjct: 61 APLPNLFEFGHMNTAADLQQQVVNIVMQLGPKDLKRI 97 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 38/84 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK GM+Q + +LLG+ +S E G++ P + KI V L ++ Sbjct: 12 IRELRKRAGMTQEQLAELLGIDQKHMSRIELGKSYPSLDRLLKIAVVVNAPLPNLFEFGH 71 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 + +++ N + KD K Sbjct: 72 MNTAADLQQQVVNIVMQLGPKDLK 95 >gi|322390908|ref|ZP_08064416.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142421|gb|EFX37891.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 158 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S+ I Sbjct: 2 IGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDIV 61 Query: 92 DGEV 95 E Sbjct: 62 GEEK 65 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +K++RK ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 1 MIGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60 Query: 173 YFGDEVIVP 181 ++++ P Sbjct: 61 VGEEKMLTP 69 >gi|310659792|ref|YP_003937513.1| hypothetical protein CLOST_2493 [Clostridium sticklandii DSM 519] gi|308826570|emb|CBH22608.1| protein of unknown function [Clostridium sticklandii] Length = 234 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G I+ +RK N TQ+E+A V+ +E + + + + + S D + Sbjct: 3 FGQNIQFLRKMRNKMTQEELAEKLGVSRQTVSKWELDVMYPEMDKVIEICKLFSCSMDEL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + R++ ++ Sbjct: 63 IRNDMNVSDEAY--SDIRMEYVEPFRYIRYA 91 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 112 YAIGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + G ++ +RK + M+Q E + LG+ T+S +E PE+ +I ++ +D Sbjct: 1 MSFGQNIQFLRKMRNKMTQEELAEKLGVSRQTVSKWELDVMYPEMDKVIEICKLFSCSMD 60 Query: 171 WIYFGDEVIVPKSIKRAKGN 190 + D + ++ + Sbjct: 61 ELIRNDMNVSDEAYSDIRME 80 >gi|300857155|ref|YP_003782139.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437270|gb|ADK17037.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 371 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + RK TQ ++A +++V+ +E G I + L + IS D + Sbjct: 5 NIAKTLVAKRKEKAITQDKLAEYIGVSKASVSKWETGQSYPDITFLPQLAAYFNISIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E + + +L Sbjct: 65 IGYEPQMTKDDIKKLYNKL 83 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 43/90 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I L + RK+K ++Q + + +G+ +++S +E G++ P+I ++ Sbjct: 1 MKEINIAKTLVAKRKEKAITQDKLAEYIGVSKASVSKWETGQSYPDITFLPQLAAYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 +D + + + IK+ +S+ S K Sbjct: 61 IDELIGYEPQMTKDDIKKLYNKLASEFSSK 90 >gi|294850380|ref|ZP_06791112.1| conserved hypothetical protein [Staphylococcus aureus A9754] gi|294822723|gb|EFG39160.1| conserved hypothetical protein [Staphylococcus aureus A9754] Length = 197 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 8/104 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I++ RK N TQ++MA AVN +ENG I + +IS D + Sbjct: 3 IGDVIREYRKRKNMTQEQMANYLGVTAPAVNKWENGNSLPDITLLAPIARLLDISLDTLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 E LD +R++ + KL Sbjct: 63 SFHETLSNEEINKIITELDF--------KLREETYDEAFHYAKL 98 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ RK K M+Q + LG+ ++ +E G ++P+I I ++ LD + E Sbjct: 7 IREYRKRKNMTQEQMANYLGVTAPAVNKWENGNSLPDITLLAPIARLLDISLDTLLSFHE 66 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + I + K ++ + Sbjct: 67 TLSNEEINKIITELDFKLREETYDEA 92 >gi|227820316|ref|YP_002824287.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339315|gb|ACP23534.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 472 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 43/121 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++++R+AN TQ + A S +N EN S L L +++I + Sbjct: 8 IGRKVRELREANRATQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAELS 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 GE L+ ++ + L+ + N EQ + Sbjct: 68 SGEGDRLLSALSEALTDPLFETYAPNLQELKLITQNAPGLAHALIKCHQAYRRNSEQLAS 127 Query: 152 I 152 I Sbjct: 128 I 128 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R+ +Q +F + +G+ S L+ E + + + + + Sbjct: 6 LYIGRKVRELREANRATQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + G+ + ++ A Sbjct: 66 LSSGEGDRLLSALSEA 81 >gi|295110847|emb|CBL24800.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 255 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I ++R +Q E+A AV+ +ENG + L +++S + + Sbjct: 7 ILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSINTLL 62 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +R KGMSQ E + + + +S +E G T+P + + + +V ++ Sbjct: 1 MDTKQVILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|326693523|ref|ZP_08230528.1| XRE family transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 183 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K RK ++Q++ L + N T+SN+E G+T+P+I+ I + LD Sbjct: 1 MIFHNLIKEKRKKMSLTQMDLANKLLVSNKTISNWETGKTLPDIENIILISKYLNLSLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ GDE +V K + + + + K S+ Sbjct: 61 LFLGDETMVEKLRENQQERKFYRVVKISLVSA 92 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 31/83 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK+ RK + TQ ++A ++ +E G I + + +S D ++ G+ Sbjct: 7 IKEKRKKMSLTQMDLANKLLVSNKTISNWETGKTLPDIENIILISKYLNLSLDDLFLGDE 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 ++R + L Sbjct: 67 TMVEKLRENQQERKFYRVVKISL 89 >gi|309804464|ref|ZP_07698531.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|309809826|ref|ZP_07703678.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|312873153|ref|ZP_07733212.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|312873404|ref|ZP_07733455.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|325911527|ref|ZP_08173936.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|308166217|gb|EFO68433.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|308169868|gb|EFO71909.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|311091088|gb|EFQ49481.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311091386|gb|EFQ49771.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325476657|gb|EGC79814.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 210 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++ R TQ+E+A +AV +E G + + + ++ D++ Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLL 62 Query: 92 DGEV 95 D + Sbjct: 63 DKDN 66 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 37/71 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++++ R + G++Q E +++ + + ++ +E GR +P++ + I +D++ Sbjct: 5 EKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLLDK 64 Query: 176 DEVIVPKSIKR 186 D I IK+ Sbjct: 65 DNAIDLSIIKK 75 >gi|283479895|emb|CAY75811.1| putative HTH-type transcriptional regulatory protein Memar_2347 [Erwinia pyrifoliae DSM 12163] gi|283479904|emb|CAY75820.1| putative HTH-type transcriptional regulatory protein Memar_2347 [Erwinia pyrifoliae DSM 12163] Length = 142 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 38/108 (35%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 + + ++ + + ++K +G RI RK TQ ++A + + +E G Sbjct: 15 MLTTRQLQQAMNTKDEAFFKQLGARIAQSRKEQQLTQTQLAEQLGIAQQTMAHYEGGKLK 74 Query: 71 TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 S L +S D + R + + I ++L Sbjct: 75 VSAALLPQLAQILNLSLDELLGLSAQGRSGKRGPASRLEQQIEIISQL 122 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 I + + + K +GAR+ RK++ ++Q + + LG+ T+++YE G Sbjct: 12 IMAMLTTRQLQQAMNTKDEAFFKQLGARIAQSRKEQQLTQTQLAEQLGIAQQTMAHYEGG 71 Query: 150 RTIPEIKPARKIKQVTKKHLDWIY 173 + ++ Q+ LD + Sbjct: 72 KLKVSAALLPQLAQILNLSLDELL 95 >gi|257877770|ref|ZP_05657423.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811936|gb|EEV40756.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 72 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+D+R+ + Q+++A N ++ + +E+G + + L + Y S D++ + Sbjct: 4 RIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLDIPTQSLIKLADFYSTSVDYLLN 61 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+DK ++Q + KLL + +T S YE G+ + K+ +D++ Sbjct: 1 MYHRIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLDIPTQSLIKLADFYSTSVDYLL 60 Query: 174 FGDEVIVP 181 + P Sbjct: 61 NLTDHQKP 68 >gi|300362438|ref|ZP_07058614.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03] gi|300353429|gb|EFJ69301.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03] Length = 95 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I D+RK NN +Q+ +A N AV+ +E+ I + L + ++ D++ Sbjct: 3 LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDYLL 62 Query: 92 DGEVIDRRYEDVT 104 ++ Sbjct: 63 KSGEPSFELKNED 75 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +RK +SQ + + + +S +E ++IP+I+ + ++ D+ Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDY 60 Query: 172 IYF-GDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + G+ K+ ++ S + KK N Sbjct: 61 LLKSGEPSFELKNEDINDKDKLPILSDESKKIFN 94 >gi|154498443|ref|ZP_02036821.1| hypothetical protein BACCAP_02432 [Bacteroides capillosus ATCC 29799] gi|150272511|gb|EDM99696.1| hypothetical protein BACCAP_02432 [Bacteroides capillosus ATCC 29799] Length = 210 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI R+A +Q+++ AV+ +E+G + + + +S D++ Sbjct: 2 ELNERIAAARRAAGMSQEQLGEALGVSRQAVSKWESGQTKPDLEAVGKMCELFHLSADYL 61 Query: 91 YDGEVIDRRY 100 G+ + Sbjct: 62 LLGKEEKKDD 71 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+ + R+ GMSQ + G+ LG+ +S +E G+T P+++ K+ ++ D+ Sbjct: 1 MELNERIAAARRAAGMSQEQLGEALGVSRQAVSKWESGQTKPDLEAVGKMCELFHLSADY 60 Query: 172 IYFGDEVIVP 181 + G E Sbjct: 61 LLLGKEEKKD 70 >gi|229827236|ref|ZP_04453305.1| hypothetical protein GCWU000182_02622 [Abiotrophia defectiva ATCC 49176] gi|229788854|gb|EEP24968.1| hypothetical protein GCWU000182_02622 [Abiotrophia defectiva ATCC 49176] Length = 371 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK RK N TQ+ +A AV+ +E+G I + L + + IS D + Sbjct: 4 KLSENIKKYRKEMNLTQEGLAEAFGVTVGAVSKWESGSTVPDIMTMMELADFFNISMDIL 63 Query: 91 YDGEVIDRRYEDVT 104 + + ED++ Sbjct: 64 LGYNISSKTIEDIS 77 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 6/92 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K RK+ ++Q + G+ +S +E G T+P+I ++ +D + Sbjct: 7 ENIKKYRKEMNLTQEGLAEAFGVTVGAVSKWESGSTVPDIMTMMELADFFNISMDILLGY 66 Query: 176 D------EVIVPKSIKRAKGNQSSKKSKKDKK 201 + E I + I+ A+ + ++ + +K Sbjct: 67 NISSKTIEDISGRIIRLAENQKYTEAVSEAEK 98 >gi|30019868|ref|NP_831499.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229043585|ref|ZP_04191294.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|229127155|ref|ZP_04256152.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|29895413|gb|AAP08700.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228656271|gb|EEL12112.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|228725807|gb|EEL77055.1| Transcriptional regulator, MerR [Bacillus cereus AH676] Length = 181 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|330819140|ref|YP_004348002.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327371135|gb|AEA62490.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 204 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG I+ +R T +++ A +S ++ E + +I A L N IS D Sbjct: 25 PRVGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDE 84 Query: 90 IYDGEVIDRR 99 ++ Sbjct: 85 LFAQPKSPET 94 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 29 ETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFA- 87 Query: 176 DEVIVPKSIK 185 + P++I+ Sbjct: 88 -QPKSPETIR 96 >gi|312873901|ref|ZP_07733939.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311090577|gb|EFQ48983.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] Length = 199 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + V R+K +R N KTQKE A + +++ +ENG + +I + + ++ +S D Sbjct: 3 NRTVSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCSVSLD 62 Query: 89 WIYDGEVIDRRYEDVTNKK-RLDPYAIGARL 118 W+ + + + A+ + Sbjct: 63 WLAGRSDYTFNLSSMRDFVLFMYELAMKKEI 93 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + RLK +R +Q EF + LG+P ++S YE G+ P I I Sbjct: 1 MNNRTVSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCSVS 60 Query: 169 LDWI 172 LDW+ Sbjct: 61 LDWL 64 >gi|167767712|ref|ZP_02439765.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1] gi|240145134|ref|ZP_04743735.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|317497495|ref|ZP_07955815.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710451|gb|EDS21030.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1] gi|257202808|gb|EEV01093.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|291558919|emb|CBL37719.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] gi|316895281|gb|EFV17443.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 32/77 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G + ++RK TQK++A + V+ +E G ++ + + + I+ Sbjct: 6 NEKFGHFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVLGITVT 65 Query: 89 WIYDGEVIDRRYEDVTN 105 + GE + ++ Sbjct: 66 ELLQGEKLKENKTLNSD 82 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 39/79 (49%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +++ G L +RK+K M+Q + L + + T+S +E+G ++P + I V Sbjct: 1 MYQINNEKFGHFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVL 60 Query: 166 KKHLDWIYFGDEVIVPKSI 184 + + G+++ K++ Sbjct: 61 GITVTELLQGEKLKENKTL 79 >gi|16799238|ref|NP_469506.1| hypothetical protein lin0161 [Listeria innocua Clip11262] gi|16412580|emb|CAC95394.1| lin0161 [Listeria innocua Clip11262] Length = 117 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 1/98 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I + K VG +IK R+ Q+ +A + ++ +ENG + L + Sbjct: 6 IMELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFN 65 Query: 85 ISFDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSI 121 D + + E +D ++ I Sbjct: 66 KRLDDFFPERNLPPVDERSVTIAAHIDDDVTEEEMRDI 103 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K R+++G++Q + L T+S YE G ++ ++ K LD Sbjct: 10 NKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLD 69 Query: 171 WIY 173 + Sbjct: 70 DFF 72 >gi|89097987|ref|ZP_01170873.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911] gi|89087150|gb|EAR66265.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911] Length = 187 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 52/143 (36%), Gaps = 6/143 (4%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ K++G +++IR++ + A ++ + E G + ++ + Sbjct: 1 MEEKMENIHKNIGENLRNIRRSRGLSLDMAAEATGVSKAMLGQIERGESNPTVTTLWKIA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI-----RKDKGMSQIEFG-K 134 + +ISF + + + + ++ + ++ + RK + +E Sbjct: 61 SGLQISFSSLMAEKSSEVSFASISRINPIIENKGKYKVFPLFPFDPRKKFEIFIVEIAPD 120 Query: 135 LLGMPNSTLSNYEQGRTIPEIKP 157 + + E+ T+ + Sbjct: 121 WKQISDQHNEGVEEYITVISGEI 143 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + K IG L++IR+ +G+S + G+ + L E+G + P + KI Sbjct: 1 MEEKMENIHKNIGENLRNIRRSRGLSLDMAAEATGVSKAMLGQIERGESNPTVTTLWKIA 60 Query: 163 QVTKKHLDWIY 173 + + Sbjct: 61 SGLQISFSSLM 71 >gi|327490803|gb|EGF22584.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 120 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQK++A + +E+G + + +S D++ Sbjct: 4 ERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDYLLGK 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + E ++ + L +K Sbjct: 64 TDNKKSDEINLSEFEILYRKTSKNLTERQK 93 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK +RK+ G++Q + + G+ +E G+ P + +K +D++ Sbjct: 1 MFPERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + I ++ +K+ K+ Sbjct: 61 LGKTDNKKSDEINLSEFEILYRKTSKN 87 >gi|323694108|ref|ZP_08108287.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323501825|gb|EGB17708.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 177 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K++R TQ+E+A A + ++ E + S SI + + + Sbjct: 2 NIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ + + + +K I Sbjct: 62 FNETPEEQIVFGKNDYFTKEDTELKNEIKWI 92 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA+LK +R KG++Q E + +S E+ T P I I Q + Sbjct: 1 MNIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + I K + +K+ + Sbjct: 61 FF---NETPEEQIVFGKNDYFTKEDTE 84 >gi|19746767|ref|NP_607903.1| hypothetical protein spyM18_1900 [Streptococcus pyogenes MGAS8232] gi|139473168|ref|YP_001127883.1| DNA-binding membrane protein [Streptococcus pyogenes str. Manfredo] gi|19748999|gb|AAL98402.1| hypothetical protein spyM18_1900 [Streptococcus pyogenes MGAS8232] gi|134271414|emb|CAM29634.1| putative DNA-binding membrane protein [Streptococcus pyogenes str. Manfredo] Length = 195 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ RK +Q+E+ +++ +EN I L L +++S D + Sbjct: 2 EIGQQMIRYRKQQALSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++SN+E +T P+I + Q+ + LD Sbjct: 1 MEIGQQMIRYRKQQALSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTK 86 >gi|306833435|ref|ZP_07466562.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424205|gb|EFM27344.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 202 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RI+ +RK +QKE A+ + +++ +EN S +I + + + IS DW+ Sbjct: 6 LGERIQVLRKNMKMSQKEFAVFLEIPQPSLSAYENNRNSPTIEVLINIAKKCHISLDWL 64 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G R++ +RK+ MSQ EF L +P +LS YE R P I+ I + Sbjct: 1 MQNVTLGERIQVLRKNMKMSQKEFAVFLEIPQPSLSAYENNRNSPTIEVLINIAKKCHIS 60 Query: 169 LDWI 172 LDW+ Sbjct: 61 LDWL 64 >gi|229191966|ref|ZP_04318936.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876] gi|228591517|gb|EEK49366.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876] Length = 144 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 43/134 (32%), Gaps = 3/134 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I ++RK +Q E+A + +E G + + +E+S D++ Sbjct: 2 LGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + E V+N + + L + + + Sbjct: 62 ---DRTQTKEMVSNNSSNLSIKEERDIARDLEKTLEDLENSEDALMFDGEPIDEHTKEMI 118 Query: 152 IPEIKPARKIKQVT 165 ++ + ++ + Sbjct: 119 RISLENSMRMAKQL 132 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++ +RK + +SQ E LG L+NYEQG+ P+ +KI + D++ Sbjct: 1 MLGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 D + + N S K+ + Sbjct: 61 L--DRTQTKEMVSNNSSNLSIKEERD 84 >gi|86137418|ref|ZP_01055995.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85825753|gb|EAQ45951.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 133 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 4/121 (3%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 E T PE + G R+ R+A + TQ ++A ++ + +E + Sbjct: 3 DETTDWFGPEAATF----GDRVAAAREAADMTQAQLARRLGVKKTTLMGWEQDLSEPRAN 58 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 + +S W+ GE + D + L+++R + + + Sbjct: 59 KLSMVSGLLNVSMSWLLTGEGEGMSEPSEMDLDVGDFAGVLQELRALRNEMRSNAERAAR 118 Query: 135 L 135 L Sbjct: 119 L 119 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 30/68 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + + R+ M+Q + + LG+ +TL +EQ + P + + + W+ G+ Sbjct: 20 VAAAREAADMTQAQLARRLGVKKTTLMGWEQDLSEPRANKLSMVSGLLNVSMSWLLTGEG 79 Query: 178 VIVPKSIK 185 + + + Sbjct: 80 EGMSEPSE 87 >gi|331092591|ref|ZP_08341410.1| hypothetical protein HMPREF9477_02053 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400602|gb|EGG80216.1| hypothetical protein HMPREF9477_02053 [Lachnospiraceae bacterium 2_1_46FAA] Length = 148 Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K RK +Q+E+A N V+ +E + I+ L YEI + + Sbjct: 2 KLGEKLKKYRKERKLSQREVAEKLNVTRQVVSYWECDLTIPDIQILQQLAELYEIDMEEM 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 E + E++ A+ ++ Sbjct: 62 LQEENSTTQNEEIAALICGIILAVAFKI 89 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +LK RK++ +SQ E + L + +S +E TIP+I+ +++ ++ + ++ Sbjct: 1 MKLGEKLKKYRKERKLSQREVAEKLNVTRQVVSYWECDLTIPDIQILQQLAELYEIDMEE 60 Query: 172 IYFGD 176 + + Sbjct: 61 MLQEE 65 >gi|323483946|ref|ZP_08089320.1| hypothetical protein HMPREF9474_01069 [Clostridium symbiosum WAL-14163] gi|323693455|ref|ZP_08107666.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323402737|gb|EGA95061.1| hypothetical protein HMPREF9474_01069 [Clostridium symbiosum WAL-14163] gi|323502510|gb|EGB18361.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 74 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ N+ TQ + N + + +EN + I L + Y S D++ Sbjct: 4 DRIRDLREDNDLTQDYLGKVLNVSQRTYSRYENDERAIPIEVFSKLADFYNTSVDYLIGR 63 Query: 94 EVIDRRYED 102 + Y Sbjct: 64 TNVKDSYSK 72 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R+D ++Q GK+L + T S YE I+ K+ +D++ Sbjct: 1 MKFDRIRDLREDNDLTQDYLGKVLNVSQRTYSRYENDERAIPIEVFSKLADFYNTSVDYL 60 Query: 173 Y 173 Sbjct: 61 I 61 >gi|310828173|ref|YP_003960530.1| transcription regulator [Eubacterium limosum KIST612] gi|308739907|gb|ADO37567.1| transcription regulator [Eubacterium limosum KIST612] Length = 99 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 30/81 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G++++ +R+ TQ+++A + +V+ +E S+ + S D++ Sbjct: 4 FGSKLRQLRQEKGYTQQQLADKLGITKGSVSAYETSAKYPSVDVLRKIAVTLNTSTDFLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPY 112 D ++ Sbjct: 64 GLSDERVFNLDFLTDDQIHII 84 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G++L+ +R++KG +Q + LG+ ++S YE P + RKI D Sbjct: 1 MVYFGSKLRQLRQEKGYTQQQLADKLGITKGSVSAYETSAKYPSVDVLRKIAVTLNTSTD 60 Query: 171 WIY 173 ++ Sbjct: 61 FLL 63 >gi|289433492|ref|YP_003463364.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169736|emb|CBH26272.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 111 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K VG +IK R+ Q+ +A + ++ +ENG + L + Sbjct: 2 ELNKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDILFELAKIFNKR 61 Query: 87 FDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSI 121 D + + E +D L+ I Sbjct: 62 LDDFFPERNLPPADERGMTIAAHIDDDVTDEELRDI 97 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K R+++G++Q + L T+S YE G ++ ++ K LD Sbjct: 4 NKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDILFELAKIFNKRLD 63 Query: 171 WIY 173 + Sbjct: 64 DFF 66 >gi|268610925|ref|ZP_06144652.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 68 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 37/67 (55%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++RK + TQ+ +AI N ++ ++ +E G + + + + +++S D++ + Sbjct: 2 RLKELRKKKHMTQQRLAIELNMSQNTISRYETGEREADYKTLILIADYFQVSIDYLLERT 61 Query: 95 VIDRRYE 101 R Y+ Sbjct: 62 DDPRFYK 68 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +RK K M+Q L M +T+S YE G + K I + +D++ Sbjct: 1 MRLKELRKKKHMTQQRLAIELNMSQNTISRYETGEREADYKTLILIADYFQVSIDYLL 58 >gi|229008902|ref|ZP_04166256.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] gi|228752339|gb|EEM02013.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] Length = 218 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 41/107 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R +N +QKE+ A + AV+ +E G+ + + + + I I Sbjct: 3 IGKNIKKLRDKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGVIQKIADHFGILKSDII 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + + + + + L +I + + + + + Sbjct: 63 EDQDSKVTHIRPNQPEIKNNCKPVPLLGAIAAGTPLEMVAVEEWVNI 109 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +IG +K +R +SQ E G++ G+ + +S +E+G P + +KI Sbjct: 1 MSIGKNIKKLRDKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGVIQKIADHFGI 56 >gi|160895159|ref|ZP_02075932.1| hypothetical protein CLOL250_02719 [Clostridium sp. L2-50] gi|156863193|gb|EDO56624.1| hypothetical protein CLOL250_02719 [Clostridium sp. L2-50] Length = 273 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I ++R +Q E+A AV+ +ENG + L E+++S + + Sbjct: 25 IFELRTKRGMSQDELAEKIMVTRQAVSRWENGETIPNTDTLKLLSKEFDVSINTLL 80 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +R +GMSQ E + + + +S +E G TIP + + + ++ Sbjct: 19 METKNIIFELRTKRGMSQDELAEKIMVTRQAVSRWENGETIPNTDTLKLLSKEFDVSINT 78 Query: 172 IY 173 + Sbjct: 79 LL 80 >gi|154495860|ref|ZP_02034556.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC 29799] gi|150275058|gb|EDN02106.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC 29799] Length = 253 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G + +R+ N TQKE+A + AV+ +E G+ + L + + ++ Sbjct: 7 ERFGGFLLQLRREKNLTQKELAERLFVSDKAVSKWERGLSLPDVGLLLPMADCLGVTVTE 66 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + GE V + L Sbjct: 67 LLRGERTAAAQLPVEEVEAL 86 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D G L +R++K ++Q E + L + + +S +E+G ++P++ + Sbjct: 1 MNDIDKERFGGFLLQLRREKNLTQKELAERLFVSDKAVSKWERGLSLPDVGLLLPMADCL 60 Query: 166 KKHLDWIYFGD------------EVIVPKSIKRAKGNQSSKKSKKDK 200 + + G+ E +V +++ + + ++K+++ K Sbjct: 61 GVTVTELLRGERTAAAQLPVEEVEALVKSTLQLTEEERQAQKTRRRK 107 >gi|149924579|ref|ZP_01912935.1| hypothetical protein PPSIR1_32734 [Plesiocystis pacifica SIR-1] gi|149814545|gb|EDM74129.1| hypothetical protein PPSIR1_32734 [Plesiocystis pacifica SIR-1] Length = 159 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-S 70 ++ + R+Y +G RI+ R+ TQK+ A+ A ++ ENG S Sbjct: 33 ETRPDPRRGREVGERRYMVALGQRIRSAREQRGMTQKQAALAAGIATDMISRLENGRYQS 92 Query: 71 TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 +R L + I+ + +++R V Sbjct: 93 PGLRTLLRIAEGLGIALSELLPDTNLEQRASPVE 126 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E +R A+G R++S R+ +GM+Q + G+ +S E GR Sbjct: 31 RKETRPDPRRGREVGERRYMVALGQRIRSAREQRGMTQKQAALAAGIATDMISRLENGRY 90 Query: 152 -IPEIKPARKIKQVTKKHLDWIY 173 P ++ +I + L + Sbjct: 91 QSPGLRTLLRIAEGLGIALSELL 113 >gi|153853834|ref|ZP_01995190.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814] gi|149753584|gb|EDM63515.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814] Length = 377 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 6/102 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I +R + TQ+++A +V+ +E I L +E+S + Sbjct: 3 LGEKIYKLRTKRSMTQEQLAEKIGVSRQSVSKWETDSAIPDIEKLKLLAEIFEVSITELL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 E + ++ K I++ K + + Sbjct: 63 GMECEEDTKRKDEKERIEHCQ------KEIKRWKRYAIVLIA 98 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ +R + M+Q + + +G+ ++S +E IP+I+ + + ++ + + Sbjct: 1 MTLGEKIYKLRTKRSMTQEQLAEKIGVSRQSVSKWETDSAIPDIEKLKLLAEIFEVSITE 60 Query: 172 IYFGD-EVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + E + ++ + K+ K+ K+ + Sbjct: 61 LLGMECEEDTKRKDEKERIEHCQKEIKRWKRYA 93 >gi|163939188|ref|YP_001644072.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010668|ref|ZP_04167868.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048] gi|229132174|ref|ZP_04261032.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196] gi|163861385|gb|ABY42444.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228651321|gb|EEL07298.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196] gi|228750633|gb|EEM00459.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048] Length = 107 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQ 129 E + D + + K R+ +Q Sbjct: 62 LHDETTTEGHLDSEWTQLVKDAMSSGVSKEQFREFLEFTQ 101 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGDEVIV 180 + + Sbjct: 61 LLHDETTTE 69 >gi|95930238|ref|ZP_01312976.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95133701|gb|EAT15362.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 191 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R N+ T + +A + + ++ E G+ + S+ + L + +S + Sbjct: 6 IGKKLKKMRLNNDMTIEGLANKSQVSSNMISRIERGLTTPSVEILMKLAGAFGMSISYFV 65 Query: 92 D--GEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + + + + ++ Sbjct: 66 EEAEKGSTVVHTPNGSGEPIFFFEDKHQI 94 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +LK +R + M+ + ++ +S E+G T P ++ K+ + + Sbjct: 8 KKLKKMRLNNDMTIEGLANKSQVSSNMISRIERGLTTPSVEILMKLAGAFGMSISYFVEE 67 Query: 176 DE 177 E Sbjct: 68 AE 69 >gi|323485345|ref|ZP_08090694.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum WAL-14163] gi|323401381|gb|EGA93730.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum WAL-14163] Length = 177 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K++R TQ+E+A A + ++ E + S SI + + + Sbjct: 2 NIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ + + + +K I Sbjct: 62 FNETPEEQIVFGKNDYFTKEDTELKNEIKWI 92 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA+LK +R KG++Q E + +S E+ T P I I Q + Sbjct: 1 MNIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + I K + +K+ + Sbjct: 61 FF---NETPEEQIVFGKNDYFTKEDTE 84 >gi|308172435|ref|YP_003919140.1| hypothetical protein BAMF_0544 [Bacillus amyloliquefaciens DSM 7] gi|307605299|emb|CBI41670.1| yqaE hypothetical protein B. subtilis [Bacillus amyloliquefaciens DSM 7] Length = 126 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R Q+E+A + +E G + + + +++S D++ GE Sbjct: 6 RLKELRVGRKLNQQEVADNLGIARTTYASYEQGKREPDHETLVKIADFFDVSIDFLLRGE 65 Query: 95 V 95 Sbjct: 66 D 66 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 39/81 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R + ++Q E LG+ +T ++YEQG+ P+ + KI +D+ Sbjct: 1 MNFSFRLKELRVGRKLNQQEVADNLGIARTTYASYEQGKREPDHETLVKIADFFDVSIDF 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + G++ K+ + K N Sbjct: 61 LLRGEDHYRDKARELRKHNDV 81 >gi|291551194|emb|CBL27456.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 170 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 1/89 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I RK N TQ+++A ++ +E G C L E E++ + D Sbjct: 23 GKFIALKRKQKNLTQEQLAEKLGVSNKTISKWETGKCMPDYSIVKSLCEELEVTVAELMD 82 Query: 93 GEVIDRRYEDV-TNKKRLDPYAIGARLKS 120 GE+ + +++ LD L+ Sbjct: 83 GEISEENSVRTYDDEQILDLLRRTQELEK 111 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 4/106 (3%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + ++ G + RK K ++Q + + LG+ N T+S +E G+ +P+ + + Sbjct: 10 QMNGGIHMNQLVTGKFIALKRKQKNLTQEQLAEKLGVSNKTISKWETGKCMPDYSIVKSL 69 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQS---SKKSKKDKKSSN 204 + + + + G E+ S++ Q +++++ +K N Sbjct: 70 CEELEVTVAELMDG-EISEENSVRTYDDEQILDLLRRTQELEKQKN 114 >gi|226349879|ref|YP_002776992.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226245794|dbj|BAH47061.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 161 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 18/139 (12%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ R++ +Q+E+A A + +E G S + + +S + Sbjct: 25 DQLEKARRSAGVSQRELARLARLNADTIRRWELGDSSPQVDLLARVTAAIGVSISDLVKV 84 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 DR D R +G++Q + G G+ + + E+G Sbjct: 85 PEGDRYPGD------------------WRILRGLTQPQLGAAAGVTTQIVGSVERGEISL 126 Query: 154 EIKPARKIKQVTKKHLDWI 172 ARK+ + + Sbjct: 127 SDNMARKLSAALQIPESEL 145 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 7/73 (9%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 L+ PE +Y D R TQ ++ A V E G S S A Sbjct: 80 DLVKVPEGDRYPGD-------WRILRGLTQPQLGAAAGVTTQIVGSVERGEISLSDNMAR 132 Query: 78 YLRNEYEISFDWI 90 L +I + Sbjct: 133 KLSAALQIPESEL 145 Score = 39.2 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +L+ R+ G+SQ E +L + T+ +E G + P++ ++ + + Sbjct: 24 PDQLEKARRSAGVSQRELARLARLNADTIRRWELGDSSPQVDLLARVTAAIGVSISDLVK 83 Query: 175 GDE 177 E Sbjct: 84 VPE 86 >gi|328946068|gb|EGG40214.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 94 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K IR+ +Q ++A ++ +EN + L + Y+IS D + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLICLADFYQISLDEL 60 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +LK IR+ KG SQ + + LG T+SN+E +TI + + + LD + Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLICLADFYQISLDEL 60 >gi|300854557|ref|YP_003779541.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434672|gb|ADK14439.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 365 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +RK TQ ++ +AV+ +E+G I L + + +S D + Sbjct: 5 QIGEIIFKLRKEKGITQDQLGGFIGVSTAAVSKWESGNSYPDITLLPVLASYFNVSIDKL 64 Query: 91 YDGEVI 96 + ++ Sbjct: 65 LNYKIE 70 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + +RK+KG++Q + G +G+ + +S +E G + P+I + Sbjct: 1 MDKLQIGEIIFKLRKEKGITQDQLGGFIGVSTAAVSKWESGNSYPDITLLPVLASYFNVS 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + K + Sbjct: 61 IDKLLNYKIELSEKEV 76 >gi|290956608|ref|YP_003487790.1| UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] gi|260646134|emb|CBG69227.1| putative UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] Length = 509 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y + +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLERIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|160873045|ref|YP_001557051.1| putative phage repressor [Shewanella baltica OS195] gi|160858567|gb|ABX51791.1| putative phage repressor [Shewanella baltica OS195] Length = 214 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RIK RK QK++A + A++ +E + + S L L N +++ W+ Sbjct: 3 KLSNRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTNPSGELLLKLANVLKVNEGWL 62 Query: 91 YDGEVIDRRYEDVTNKK 107 G+ +K Sbjct: 63 LYGDTFKNDKIKDCGEK 79 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K+ RK G+ Q + KL+ + + +S++E+ T P + K+ V K + W+ +G Sbjct: 6 NRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTNPSGELLLKLANVLKVNEGWLLYG 65 Query: 176 DEVIVPK 182 D K Sbjct: 66 DTFKNDK 72 >gi|9635515|ref|NP_059606.1| C2 [Enterobacteria phage P22] gi|62362268|ref|YP_224193.1| gp55 [Enterobacteria phage ES18] gi|168240083|ref|ZP_02665015.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451869|ref|YP_002044323.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|59800201|sp|P69202|RPC2_BPP22 RecName: Full=Repressor protein C2 gi|15655|emb|CAA24470.1| unnamed protein product [Enterobacteria phage P22] gi|1143409|emb|CAA60873.1| c2 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|8439602|gb|AAF75024.1| repressor protein [Enterobacteria phage P22] gi|28394307|tpg|DAA01021.1| TPA_inf: prophage repressor [Enterobacteria phage P22] gi|58339111|gb|AAW70526.1| gp55 [Enterobacteria phage ES18] gi|169658888|dbj|BAG12645.1| prophage repressor [Enterobacteria phage P22] gi|194410173|gb|ACF70392.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340367|gb|EDZ27131.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 216 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L + S D++ Sbjct: 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G++ + + Y + + + Sbjct: 66 KGDLSQTNVAYHSRHEPRGSYPLISWV 92 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+++ RK + Q GK++G+ N +S +E+ T P + + + + Sbjct: 1 MNTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCS 60 Query: 169 LDWIYFGD 176 D++ GD Sbjct: 61 PDYLLKGD 68 >gi|332362044|gb|EGJ39846.1| repressor protein [Streptococcus sanguinis SK49] Length = 75 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 34 TRIKDIRKANNKTQKEMAIG-ANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+D+R+ + TQ+ +A N SA + E+G SI + L + Y +S D++ Sbjct: 3 KRIRDLREDTDLTQEYVAKKILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYLVG 62 Query: 93 GEVIDRRYEDVT 104 + Sbjct: 63 RVDNKEDHYSKK 74 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 1/74 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKL-LGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R++ +R+D ++Q K L S S E G + I K+ LD++ Sbjct: 1 MLKRIRDLREDTDLTQEYVAKKILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYL 60 Query: 173 YFGDEVIVPKSIKR 186 + K+ Sbjct: 61 VGRVDNKEDHYSKK 74 >gi|326790576|ref|YP_004308397.1| hypothetical protein Clole_1473 [Clostridium lentocellum DSM 5427] gi|326541340|gb|ADZ83199.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 189 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 38/98 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +GTRIK+IRK+ +Q MA + + +EN +++ + +++ I Sbjct: 8 QIGTRIKEIRKSKGFSQAYMAEKIGVNRTTYSNYENNNREPNLKTIEKICEILDVTISDI 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + + D +I ++ R G+ Sbjct: 68 VSDTQKNITVDYWRGMMDTDLNSIKEIEENTRGYSGLE 105 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 32/66 (48%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG R+K IRK KG SQ + +G+ +T SNYE P +K KI ++ + Sbjct: 5 DFIQIGTRIKEIRKSKGFSQAYMAEKIGVNRTTYSNYENNNREPNLKTIEKICEILDVTI 64 Query: 170 DWIYFG 175 I Sbjct: 65 SDIVSD 70 >gi|289547795|ref|YP_003472783.1| transcriptional regulator of molybdate metabolism, XRE family [Thermocrinis albus DSM 14484] gi|289181412|gb|ADC88656.1| transcriptional regulator of molybdate metabolism, XRE family [Thermocrinis albus DSM 14484] Length = 329 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ +Q+E+A + ++ E M S+ +A+ + S + ++ Sbjct: 3 NRVKELRERAGLSQEELAKLCKIPRTTLSAIEREMVVPSVSHAIRIARALGCSVEELFPQ 62 Query: 94 EV 95 E Sbjct: 63 EE 64 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 37/66 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R+ G+SQ E KL +P +TLS E+ +P + A +I + ++ ++ Sbjct: 1 MRNRVKELRERAGLSQEELAKLCKIPRTTLSAIEREMVVPSVSHAIRIARALGCSVEELF 60 Query: 174 FGDEVI 179 +EV+ Sbjct: 61 PQEEVL 66 >gi|237734898|ref|ZP_04565379.1| transcriptional regulator [Mollicutes bacterium D7] gi|229382226|gb|EEO32317.1| transcriptional regulator [Coprobacillus sp. D7] Length = 71 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A R+K+ R M+Q + +G+ T++ E+G P +K KI +V K LD Sbjct: 1 MAKNLRIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDE 60 Query: 172 IYFGD 176 +++ D Sbjct: 61 LFWED 65 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK R A + TQK++A +N E G + +++ + + S D ++ + Sbjct: 6 RIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDELFWED 65 Query: 95 VIDRR 99 ++D Sbjct: 66 ILDEE 70 >gi|154504949|ref|ZP_02041687.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149] gi|153794832|gb|EDN77252.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149] Length = 248 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G + +RK TQKE+A A++ +E G+ I L + ++ Sbjct: 9 NQKFGGFVAALRKEKGYTQKELAEKLFLSNKAISKWERGLSLPDIALLEPLADILGVTVA 68 Query: 89 WIYDGE 94 + GE Sbjct: 69 ELLKGE 74 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D G + ++RK+KG +Q E + L + N +S +E+G ++P+I + + Sbjct: 6 EIDNQKFGGFVAALRKEKGYTQKELAEKLFLSNKAISKWERGLSLPDIALLEPLADILGV 65 Query: 168 HLDWIYFGD 176 + + G+ Sbjct: 66 TVAELLKGE 74 >gi|321157319|emb|CBW39301.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae] Length = 116 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 34/82 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K++RK + TQ ++A + A +E G + + + +S D++ Sbjct: 2 EFSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPY 112 + +++ N + L Sbjct: 62 VGNSDEHLKEDELDNVELLFRM 83 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK++RK ++Q++ + LG+ +++E+G P KI QV +D+ Sbjct: 1 MEFSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDY 60 Query: 172 I-------YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DE+ + + R N +++ K K Sbjct: 61 LVGNSDEHLKEDELDNVELLFRMNSNGLTEEEKAIFKKE 99 >gi|226940913|ref|YP_002795987.1| Transcriptional regulator [Laribacter hongkongensis HLHK9] gi|226715840|gb|ACO74978.1| Transcriptional regulator [Laribacter hongkongensis HLHK9] Length = 262 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 9 TSLKSLQEYTLIIT-----PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 T+LK+ Q+ ++ PE ++ ++G R+K++RKA N ++ E A S + Sbjct: 2 TNLKAPQDNQFPLSGSTNKPENERF--ELGARLKEVRKARNVSRNEAAAAVGVSVSTMQA 59 Query: 64 FENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 +E G Y + DW+ G+ + T + Sbjct: 60 WEAGEREPDATKLSSFVRHYGVRADWLLFGDGGMFKPAAPTQAE 103 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + TNK + + +GARLK +RK + +S+ E +G+ ST+ +E G Sbjct: 4 LKAPQDNQFPLSGSTNKPENERFELGARLKEVRKARNVSRNEAAAAVGVSVSTMQAWEAG 63 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGD-EVIVPKSIKRAKGNQSS 193 P+ + DW+ FGD + P + +A+ +S Sbjct: 64 EREPDATKLSSFVRHYGVRADWLLFGDGGMFKPAAPTQAESPRSE 108 >gi|320528760|ref|ZP_08029911.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320130843|gb|EFW23422.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 349 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +RK +Q+++A N AV+ +EN I + + + I D ++ Sbjct: 15 LGKTLKQLRKETFLSQEQLAAKLNITAQAVSKWENEESYPDILFLPKIAAIFGIKIDELF 74 Query: 92 DGEVIDRRYEDVT 104 D + Sbjct: 75 DYNQESAYQQIEN 87 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G LK +RK+ +SQ + L + +S +E + P+I KI + +D Sbjct: 13 MTLGKTLKQLRKETFLSQEQLAAKLNITAQAVSKWENEESYPDILFLPKIAAIFGIKIDE 72 Query: 172 IYFGDEVIVPKSIKR 186 ++ ++ + I+ Sbjct: 73 LFDYNQESAYQQIEN 87 >gi|239945646|ref|ZP_04697583.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239992116|ref|ZP_04712780.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291449104|ref|ZP_06588494.1| regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291352051|gb|EFE78955.1| regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 202 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V R++D+R+A T + A A + ++ E G S+ L L Y + + Sbjct: 15 VAPRLRDLRRARGLTLETAAQRAGLSPAHLSRLETGRRQPSLPMLLGLARIYGTTVSELL 74 Query: 92 DGEVIDRR 99 + +R Sbjct: 75 GEQPPERD 82 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R+ +G++ + G+ + LS E GR P + + ++ + + G++ Sbjct: 19 LRDLRRARGLTLETAAQRAGLSPAHLSRLETGRRQPSLPMLLGLARIYGTTVSELL-GEQ 77 Query: 178 VIVPKSIKR 186 +I R Sbjct: 78 PPERDAIIR 86 >gi|331085146|ref|ZP_08334232.1| hypothetical protein HMPREF0987_00535 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407929|gb|EGG87419.1| hypothetical protein HMPREF0987_00535 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 106 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 34/77 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G +++ IR + N TQ+ +A + S ++ EN S+ + + N + + D Sbjct: 6 FKRIGEKLRTIRLSKNLTQEYIANAVDINTSHISNIENNRVKVSLSTLVQICNALDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTN 105 ++ E D Sbjct: 66 YVLSEEYTDSSSAIEQE 82 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L+ IG +L++IR K ++Q + + S +SN E R + +I Sbjct: 1 MDNLNFKRIGEKLRTIRLSKNLTQEYIANAVDINTSHISNIENNRVKVSLSTLVQICNAL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKR 186 +D++ + +I++ Sbjct: 61 DTTVDYVLSEEYTDSSSAIEQ 81 >gi|306825566|ref|ZP_07458905.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431927|gb|EFM34904.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 69 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+++RK + +Q+ +A + ++ +E G S+ A + + ++ D++ Sbjct: 7 NRIRELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLLGS 66 Query: 94 EVI 96 E Sbjct: 67 ESD 69 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +RK +SQ +G+ +T+SN+E G + ++ A+K+ + +D++ Sbjct: 5 TQNRIRELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLL 64 Query: 174 FGD 176 + Sbjct: 65 GSE 67 >gi|256617991|ref|ZP_05474837.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257091482|ref|ZP_05585843.1| predicted protein [Enterococcus faecalis CH188] gi|312905563|ref|ZP_07764677.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|256597518|gb|EEU16694.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257000294|gb|EEU86814.1| predicted protein [Enterococcus faecalis CH188] gi|310631292|gb|EFQ14575.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315576531|gb|EFU88722.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 257 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R N+ TQ+++A + AV+ +E G SI L L + Y +S D + G Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 Query: 96 I 96 Sbjct: 67 Y 67 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK+ R + +Q + + L + +S +E G++IP I + + +D Sbjct: 1 MLIQTILKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDE 60 Query: 172 IYFG 175 + G Sbjct: 61 LIQG 64 >gi|253580260|ref|ZP_04857526.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848353|gb|EES76317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 70 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +K R +K M+Q + +G+ T++ E+G P IK RKI +V K LD Sbjct: 1 MAKNIAIKVARAEKDMTQKVLAEAVGVSRQTINAIEKGEYNPTIKLCRKICRVLDKSLDD 60 Query: 172 IYFGDEV 178 +++ DE Sbjct: 61 LFWEDEE 67 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK R + TQK +A +N E G + +I+ + + S D ++ + Sbjct: 7 IKVARAEKDMTQKVLAEAVGVSRQTINAIEKGEYNPTIKLCRKICRVLDKSLDDLFWEDE 66 Query: 96 IDRR 99 D Sbjct: 67 EDEN 70 >gi|257792132|ref|YP_003182738.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476029|gb|ACV56349.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 247 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ R+ +R+ +Q+E+A AV+ +E S + L Y +S Sbjct: 14 EIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVS 69 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 I RL ++R+++G SQ E + LG+ +S +E+ + P+ + ++ Sbjct: 14 EIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVS 69 >gi|226949453|ref|YP_002804544.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843380|gb|ACO86046.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 148 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK +Q+++A + V+ +E + A L Y +S+D++ Sbjct: 3 LGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDYLI 62 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 35/62 (56%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +L +RK G+SQ + + L + T+S +E +T+PE+ A+ + ++ D+ Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 172 IY 173 + Sbjct: 61 LI 62 >gi|260881166|ref|ZP_05893333.1| transcriptional regulator, Cro/CI family [Mitsuokella multacida DSM 20544] gi|260849682|gb|EEX69689.1| transcriptional regulator, Cro/CI family [Mitsuokella multacida DSM 20544] Length = 84 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+KD+R ANN +Q ++A + + A ++E G S+ + L Y +S D++ Sbjct: 21 KRMKDLRVANNLSQTDVAKVLHCSQVAYGMYELGKRRISVENLVKLAKYYHVSMDYL 77 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 R + + A R+K +R +SQ + K+L YE G+ ++ Sbjct: 3 MRSRREDSGMAKNIAAWSKRMKDLRVANNLSQTDVAKVLHCSQVAYGMYELGKRRISVEN 62 Query: 158 ARKIKQVTKKHLDWI 172 K+ + +D++ Sbjct: 63 LVKLAKYYHVSMDYL 77 >gi|166030550|ref|ZP_02233379.1| hypothetical protein DORFOR_00211 [Dorea formicigenerans ATCC 27755] gi|166029712|gb|EDR48469.1| hypothetical protein DORFOR_00211 [Dorea formicigenerans ATCC 27755] Length = 114 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 31/85 (36%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T E VG IK R TQ+E+A S +E+ I L Sbjct: 18 LTKEKTGDSMQVGLNIKIKRIGRGYTQEEIADAIGVARSTYTRYESDKRLPDIYKLCALA 77 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTN 105 + +++S D + + ++ N Sbjct: 78 DYFDVSLDDLVGRDWKPKKDHKGRN 102 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 35/86 (40%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 V + +T +K D +G +K R +G +Q E +G+ ST + YE + Sbjct: 6 IIEAVPEDLVHKLTKEKTGDSMQVGLNIKIKRIGRGYTQEEIADAIGVARSTYTRYESDK 65 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGD 176 +P+I + LD + D Sbjct: 66 RLPDIYKLCALADYFDVSLDDLVGRD 91 >gi|158425505|ref|YP_001526797.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332394|dbj|BAF89879.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 72 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +R+ TQ+++ + + ++ E G + ++ L +S + Sbjct: 4 RKLVGRNFARLRQEKGLTQEDVQTRSGFSQQYISGLERGRRNPTVITLYELAQALGVSHE 63 Query: 89 WIYDGEVID 97 + + D Sbjct: 64 ELVRPDGKD 72 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +R++KG++Q + G +S E+GR P + ++ Q + + D Sbjct: 13 RLRQEKGLTQEDVQTRSGFSQQYISGLERGRRNPTVITLYELAQALGVSHEELVRPD 69 >gi|146296435|ref|YP_001180206.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410011|gb|ABP67015.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 103 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG +IK++RK +Q+++A A +SA++ E G+ ++ + N I+ Sbjct: 2 EVGKKIKELRKQKKWSQEKLAAEAGISQSALSAIERGIKQPTVETLNNICNALNITLVDF 61 Query: 91 YDGEVIDRRY 100 + E + Sbjct: 62 FSEEKTELSP 71 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K +RK K SQ + G+ S LS E+G P ++ I L Sbjct: 1 MEVGKKIKELRKQKKWSQEKLAAEAGISQSALSAIERGIKQPTVETLNNICNALNITLVD 60 Query: 172 IYFGDEVIV 180 + ++ + Sbjct: 61 FFSEEKTEL 69 >gi|325568582|ref|ZP_08144875.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157620|gb|EGC69776.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 198 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 39/85 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D + ++K + +SQ + L + T+SN+E ++ P++ + + L Sbjct: 6 DKMNLSKQIKKHWERLSLSQEGLAEKLYVSRQTISNWENEKSYPDVHNLLLLSVLFDVSL 65 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSK 194 D + GD + ++I++ + +K Sbjct: 66 DELVKGDVEQMKETIEKTAMDHYTK 90 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK + + +Q+ +A ++ +EN + L L +++S D + Sbjct: 9 NLSKQIKKHWERLSLSQEGLAEKLYVSRQTISNWENEKSYPDVHNLLLLSVLFDVSLDEL 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 G+V + + K +D Y Sbjct: 69 VKGDVEQMK--ETIEKTAMDHYTKIM 92 >gi|315031865|gb|EFT43797.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315171137|gb|EFU15154.1| helix-turn-helix protein [Enterococcus faecalis TX1342] Length = 184 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 33/75 (44%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + + G +I+ R N +Q E++ ++ +ENG + + + N +++ Sbjct: 15 EVFMNTGEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVP 74 Query: 87 FDWIYDGEVIDRRYE 101 + ++ + + + Sbjct: 75 LEVFLSEDISEIKKQ 89 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +++ R +K +SQ+E +L + T+SN+E GRT PE++ I L+ Sbjct: 17 FMNTGEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLE 76 Query: 171 WIYFGDEVIVPKS 183 D + K Sbjct: 77 VFLSEDISEIKKQ 89 >gi|313672769|ref|YP_004050880.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939525|gb|ADR18717.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 200 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 32/70 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++ ++G RIK +R N T +++A ++ ++ EN + + I + Sbjct: 1 MEEFNINIGERIKRLRHMRNLTLQDVANFTGFSKALISQIENNVVTPPITTLAKIAKVLN 60 Query: 85 ISFDWIYDGE 94 + + ++ + Sbjct: 61 VKMVYFFEDD 70 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 29/81 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +R + ++ + G + +S E P I KI +V + + + Sbjct: 10 ERIKRLRHMRNLTLQDVANFTGFSKALISQIENNVVTPPITTLAKIAKVLNVKMVYFFED 69 Query: 176 DEVIVPKSIKRAKGNQSSKKS 196 D + + + + + Sbjct: 70 DLDFKEYYLVKKNDRKIAYRE 90 >gi|239983013|ref|ZP_04705537.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291454845|ref|ZP_06594235.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291357794|gb|EFE84696.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] Length = 509 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 19/180 (10%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 I + V +RL K+ LL +TL Sbjct: 62 ---SEIVSLGYAGPMHLRVVGGRRLSGAIDVKTSKNACVAL-----LCASLLNRGRTTLR 113 Query: 145 NYEQGRTIPEIKPARKIKQVTK---KHLDWIYFGD--EVIVPKSIKRAKGNQSSKKSKKD 199 + I+ ++ +V WI G E++ P + A +Q++ + + Sbjct: 114 RVAR------IEEVYRLLEVLNSIGVRARWINDGHDLEIVPPADLDMAGMDQTAARRTRS 167 >gi|253988215|ref|YP_003039571.1| hypothetical protein PAU_00734 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638791|emb|CAR67408.1| hypothetical protein PA-RVA13-1279 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779665|emb|CAQ82826.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 101 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++RQ VG RI+ RK T ++A + ++ +E G+ + + + + + Sbjct: 2 KMRQDHLLVGKRIQKRRKELGMTAVKLAGQIGISQQQLSRYERGINRIDLSHLVQIASIL 61 Query: 84 EISFDWIY 91 + +W + Sbjct: 62 DTPINWFF 69 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 34/70 (48%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K R D +G R++ RK+ GM+ ++ +G+ LS YE+G ++ +I + Sbjct: 2 KMRQDHLLVGKRIQKRRKELGMTAVKLAGQIGISQQQLSRYERGINRIDLSHLVQIASIL 61 Query: 166 KKHLDWIYFG 175 ++W + Sbjct: 62 DTPINWFFLD 71 >gi|2444013|gb|AAB71491.1| ORF6 [Bacillus pumilus] Length = 211 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 30/80 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G+ I + RK+ +Q+ +A A++ +E S+ + L ++ Sbjct: 1 MMSLGSNISNKRKSLKLSQEYVAEQLGVSRQAISKWETNQSEPSMDNLIRLAELFDSDIK 60 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 + E +D+ + Sbjct: 61 ELVSPEQYSEEQKDLETRIE 80 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 35/88 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++G+ + + RK +SQ + LG+ +S +E ++ P + ++ ++ + Sbjct: 1 MMSLGSNISNKRKSLKLSQEYVAEQLGVSRQAISKWETNQSEPSMDNLIRLAELFDSDIK 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + ++ + + K K Sbjct: 61 ELVSPEQYSEEQKDLETRIEHGQKDIKM 88 >gi|322420304|ref|YP_004199527.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320126691|gb|ADW14251.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 181 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R N+ TQ+E+A A+ + ++ EN S SI + + + IS Sbjct: 2 KIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQEF 61 Query: 91 YDGEVI 96 + E Sbjct: 62 FSEETD 67 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK +R ++Q E + +S E T P I + I V + Sbjct: 1 MKIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + K A+ Sbjct: 61 FFSEETDQDIVFGKDAR 77 >gi|313905251|ref|ZP_07838618.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469862|gb|EFR65197.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 119 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +RI+ +R T + ++ SAV ++E+ + L + +S D++ Sbjct: 6 FASRIRKLRMDRGLTMERLSKDVKVSRSAVAMWESNGTVPRDDLLIKLSKYFGVSIDYLL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 E ++ + + + + Sbjct: 66 GNEKMEDKGPESERLQYI 83 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +R++ +R D+G++ K + + S ++ +E T+P K+ + Sbjct: 1 MGNGVFASRIRKLRMDRGLTMERLSKDVKVSRSAVAMWESNGTVPRDDLLIKLSKYFGVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 +D++ G+E + K + + + K Sbjct: 61 IDYLL-GNEKMEDKGPESERLQYIQRSLGK 89 >gi|227508605|ref|ZP_03938654.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191937|gb|EEI72004.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 184 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 31/66 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++ R+ + +Q E+A + +++ +E + S + + + ++IS D + Sbjct: 2 KIGKVLQVQREKRHWSQAELAEKLSISRQSISKWEQEVALPSFANVVAISDLFKISLDDL 61 Query: 91 YDGEVI 96 G+ Sbjct: 62 IKGDDK 67 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 37/83 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG L+ R+ + SQ E + L + ++S +EQ +P I + K LD Sbjct: 1 MKIGKVLQVQREKRHWSQAELAEKLSISRQSISKWEQEVALPSFANVVAISDLFKISLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD+ ++ K + K +K Sbjct: 61 LIKGDDKLMDKLSRNDKMRPVTK 83 >gi|209519410|ref|ZP_03268207.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209500149|gb|EEA00208.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 212 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +I+ +R T +++ A +S ++ E + +I A L N +S D Sbjct: 33 PRVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDS 92 Query: 90 IYDGEVIDR 98 ++ Sbjct: 93 LFAQPKPPE 101 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ M+ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 37 EQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 >gi|160938164|ref|ZP_02085520.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC BAA-613] gi|158438968|gb|EDP16724.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC BAA-613] Length = 359 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 32/86 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RI +R+A + TQ+++A+ AV+ +E G I L E + D + Sbjct: 4 KLGPRIASLRRAKSMTQEQLALSLGVSPPAVSKWETGASCPDISLLCPLARALETNVDTL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 E + + A Sbjct: 64 LQFEETLTEEQIDARLNEIVETARNH 89 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + S+R+ K M+Q + LG+ +S +E G + P+I + + + ++D + +E Sbjct: 9 IASLRRAKSMTQEQLALSLGVSPPAVSKWETGASCPDISLLCPLARALETNVDTLLQFEE 68 Query: 178 VIVPKSIK 185 + + I Sbjct: 69 TLTEEQID 76 >gi|308535325|ref|YP_002139718.2| helix-turn-helix transcriptional regulator PuuR [Geobacter bemidjiensis Bem] gi|308052670|gb|ACH39922.2| helix-turn-helix transcriptional regulator PuuR, cupin domain-containing protein [Geobacter bemidjiensis Bem] Length = 181 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R N+ TQ+E+A A+ + ++ EN S SI + + + IS Sbjct: 2 KIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQEF 61 Query: 91 YDGEVI 96 + E Sbjct: 62 FSEETD 67 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK +R ++Q E + +S E T P I + I V + Sbjct: 1 MKIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + K A+ Sbjct: 61 FFSEETDQDIVFGKEAR 77 >gi|91217921|ref|ZP_01254874.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC 700755] gi|91183898|gb|EAS70288.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC 700755] Length = 247 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G IK IR +Q+ A + + + +E G I + + N + IS D Sbjct: 4 FGKNIKKIRAIKGLSQQAFAELFSLKRATLGAYEEGRSEPKIDTIIKVANYFSISIDDFL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI-GARLKSI 121 EV + D I A LK I Sbjct: 64 TKEVTVNQLLRFNGGITTDINQIVKASLKEI 94 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +K IR KG+SQ F +L + +TL YE+GR+ P+I K+ +D Sbjct: 1 MSFFGKNIKKIRAIKGLSQQAFAELFSLKRATLGAYEEGRSEPKIDTIIKVANYFSISID 60 Query: 171 WIYFGD 176 + Sbjct: 61 DFLTKE 66 >gi|88802521|ref|ZP_01118048.1| putative prophage LambdaCh01, repressor protein [Polaribacter irgensii 23-P] gi|88781379|gb|EAR12557.1| putative prophage LambdaCh01, repressor protein [Polaribacter irgensii 23-P] Length = 245 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 28/85 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G IK IR +Q+ A + + + +E G I + + N + IS D Sbjct: 4 FGKNIKKIRVIKGLSQQVFAELFSLKRATLGAYEEGRSEPKIDTLIKVANYFSISIDDFL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 E+ + D I Sbjct: 64 TKEITVNQLLRFNEGITTDINQIVK 88 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +K IR KG+SQ F +L + +TL YE+GR+ P+I K+ +D Sbjct: 1 MSFFGKNIKKIRVIKGLSQQVFAELFSLKRATLGAYEEGRSEPKIDTLIKVANYFSISID 60 Query: 171 WIYFGDEVIVPKSIKRAKG 189 E+ V + ++ +G Sbjct: 61 DFLT-KEITVNQLLRFNEG 78 >gi|16802162|ref|NP_463647.1| hypothetical protein lmo0114 [Listeria monocytogenes EGD-e] gi|46906354|ref|YP_012743.1| repressor protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092250|ref|ZP_00230042.1| repressor protein, putative [Listeria monocytogenes str. 4b H7858] gi|47095185|ref|ZP_00232797.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|116871527|ref|YP_848308.1| bacteriophage-type repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|217965783|ref|YP_002351461.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|224498185|ref|ZP_03666534.1| helix-turn-helix domain protein [Listeria monocytogenes Finland 1988] gi|224502962|ref|ZP_03671269.1| helix-turn-helix domain protein [Listeria monocytogenes FSL R2-561] gi|226222753|ref|YP_002756860.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes Clip81459] gi|254827546|ref|ZP_05232233.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254832362|ref|ZP_05237017.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes 10403S] gi|254899558|ref|ZP_05259482.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes J0161] gi|254913239|ref|ZP_05263251.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937620|ref|ZP_05269317.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|254991791|ref|ZP_05273981.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J2-064] gi|255016940|ref|ZP_05289066.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL F2-515] gi|255022366|ref|ZP_05294352.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J1-208] gi|255025309|ref|ZP_05297295.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J2-003] gi|255028080|ref|ZP_05300031.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes LO28] gi|255519835|ref|ZP_05387072.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J1-175] gi|284803147|ref|YP_003415012.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578] gi|284996288|ref|YP_003418056.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923] gi|12054764|emb|CAC20620.1| AX protein [Listeria monocytogenes] gi|16409473|emb|CAC98329.1| lmo0114 [Listeria monocytogenes EGD-e] gi|46879618|gb|AAT02920.1| putative prophage LambdaLm01, repressor protein [Listeria monocytogenes serotype 4b str. F2365] gi|47016530|gb|EAL07451.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|47019452|gb|EAL10193.1| repressor protein, putative [Listeria monocytogenes str. 4b H7858] gi|116740405|emb|CAK19525.1| bacteriophage-type repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|217335053|gb|ACK40847.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|225875215|emb|CAS03909.1| Putative repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599922|gb|EEW13247.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258610220|gb|EEW22828.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284058709|gb|ADB69650.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578] gi|284061755|gb|ADB72694.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923] gi|293591239|gb|EFF99573.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|307569672|emb|CAR82851.1| repressor protein, putative [Listeria monocytogenes L99] gi|313611579|gb|EFR86184.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria monocytogenes FSL F2-208] gi|328468450|gb|EGF39456.1| hypothetical protein LM1816_04172 [Listeria monocytogenes 1816] gi|328472713|gb|EGF43568.1| hypothetical protein LM220_04442 [Listeria monocytogenes 220] gi|332310528|gb|EGJ23623.1| Bacteriophage-type repressor [Listeria monocytogenes str. Scott A] Length = 111 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 1/96 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K VG +IK R+ Q+ +A + ++ +ENG + L + Sbjct: 2 ELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKR 61 Query: 87 FDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSI 121 D + + E + +D ++ I Sbjct: 62 LDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDI 97 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K R+++G++Q + L T+S YE G ++ ++ K LD Sbjct: 4 NKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLD 63 Query: 171 WIY 173 + Sbjct: 64 DFF 66 >gi|323142483|ref|ZP_08077303.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413060|gb|EFY03959.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 141 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 9/114 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RIK R TQ +A ++ E G + ++L N ++S D Sbjct: 7 YKAIGLRIKAARARKGLTQGNIANLTGLSTPHISNIETGNTKLGLPTIIHLANVLDVSVD 66 Query: 89 WIYDGEVIDRRYEDVTNKKRL------DPYAIGARLKSIRKDKGMSQIEFGKLL 136 + + L D I + L + K G++ K + Sbjct: 67 ELLCDNIHHSEQIYCNELADLVKDCSVDELHIISELAKVIKKAGIN---SAKKV 117 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D AIG R+K+ R KG++Q L G+ +SN E G T + + V Sbjct: 4 DIDYKAIGLRIKAARARKGLTQGNIANLTGLSTPHISNIETGNTKLGLPTIIHLANVLDV 63 Query: 168 HLDWIYFGD 176 +D + + Sbjct: 64 SVDELLCDN 72 >gi|222084519|ref|YP_002543048.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221721967|gb|ACM25123.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 189 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +R A T E+A + + ++ E S + L +S + Sbjct: 9 IGARIKQLRIARGMTLDELANASAVSRAMISRIERAEASPTASLLARLCAALGLSLSSFF 68 Query: 92 DGEVIDRRYEDVTNKKRL 109 E D ++ + + Sbjct: 69 AEEEEDVSPLARSDAQPI 86 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIGAR+K +R +GM+ E + + +S E+ P ++ L Sbjct: 7 IAIGARIKQLRIARGMTLDELANASAVSRAMISRIERAEASPTASLLARLCAALGLSLSS 66 Query: 172 IYFGDEV 178 + +E Sbjct: 67 FFAEEEE 73 >gi|59712644|ref|YP_205420.1| Cro/Cl family transcriptional regulator [Vibrio fischeri ES114] gi|59480745|gb|AAW86532.1| transcriptional repressor, Cro/CI family [Vibrio fischeri ES114] Length = 215 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G+R+ +RKA TQ +A + S+V L+E + L + + +W+ Sbjct: 4 FGSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNKPKGESLMALASFLKCDVNWLL 63 Query: 92 DGEVIDRRYEDVTNKKRL 109 G+ + + Sbjct: 64 TGQGSPEPAKQEQETTVV 81 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G+RL +RK + ++Q K G+ S+++ +EQ P+ + + K ++W+ Sbjct: 4 FGSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNKPKGESLMALASFLKCDVNWLL 63 Query: 174 FGDEVIVPKSIKR 186 G P ++ Sbjct: 64 TGQGSPEPAKQEQ 76 >gi|332981126|ref|YP_004462567.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698804|gb|AEE95745.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 121 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G ++K IRK T + + AN S + E+G + S+ L +S Sbjct: 1 MESIGAKLKSIRKQRGLTLRALGKAANVSHSFIADIESGRSNPSLDTLDALAKALNVSIT 60 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 I + R E + + + Sbjct: 61 DIIRDTDYENRQEAIDLAEAI 81 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IGA+LKSIRK +G++ GK + +S +++ E GR+ P + + + + Sbjct: 1 MESIGAKLKSIRKQRGLTLRALGKAANVSHSFIADIESGRSNPSLDTLDALAKALNVSIT 60 Query: 171 WIYFGDE 177 I + Sbjct: 61 DIIRDTD 67 >gi|253579633|ref|ZP_04856902.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849134|gb|EES77095.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 74 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 32/58 (55%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+D+R + +QK+++ + + + + +E G + + + L N Y+IS D++ Sbjct: 7 QRIQDLRTDADMSQKQLSEILHISQRSYSHYETGSRNIPVEMLIRLANYYDISVDYLV 64 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y R++ +R D MSQ + ++L + + S+YE G ++ ++ +D Sbjct: 2 NYMKFQRIQDLRTDADMSQKQLSEILHISQRSYSHYETGSRNIPVEMLIRLANYYDISVD 61 Query: 171 WIY 173 ++ Sbjct: 62 YLV 64 >gi|229829704|ref|ZP_04455773.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] gi|229791693|gb|EEP27807.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] Length = 141 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++RK ++ +Q+E+A ++ +E G I L + + +S D + Sbjct: 3 FADNLIELRKYHDLSQEELAEKIGVSRQTLSKYETGESLPDIEKGKLLADAFGVSIDDLI 62 Query: 92 DGEVIDRRY 100 + Sbjct: 63 SYDKNKEDN 71 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L +RK +SQ E + +G+ TLS YE G ++P+I+ + + +D Sbjct: 1 MSFADNLIELRKYHDLSQEELAEKIGVSRQTLSKYETGESLPDIEKGKLLADAFGVSIDD 60 Query: 172 IYFGDEVIVP 181 + D+ Sbjct: 61 LISYDKNKED 70 >gi|288572782|ref|ZP_06391139.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568523|gb|EFC90080.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 148 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K IRK + TQK++A E A +E G S L + +++S D++ Sbjct: 6 KNLKKIRKRSGFTQKQVAKHLGISERAYQHYEAGDRKISPEKLLAMAKLFQVSADYLL 63 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK IRK G +Q + K LG+ +YE G + + ++ + D++ Sbjct: 4 NVKNLKKIRKRSGFTQKQVAKHLGISERAYQHYEAGDRKISPEKLLAMAKLFQVSADYLL 63 >gi|228476741|ref|ZP_04061407.1| transcriptional regulator [Streptococcus salivarius SK126] gi|228251612|gb|EEK10713.1| transcriptional regulator [Streptococcus salivarius SK126] Length = 229 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 9/103 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K+IR+A +Q +A S+ +ENG + + L + ++ + Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 I Y ++ + R + ++R K + + + + Sbjct: 64 EHEIVEVYLELNEENRQE---------ALRLTKALLEEQEAEK 97 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK IR+ +GMSQ K LG+ S+ N+E G+T P K + ++ + Sbjct: 1 MFSGQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 E++ + Q + + K Sbjct: 61 FLSEHEIVEVYLELNEENRQEALRLTK 87 >gi|331271170|ref|YP_004385879.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925] gi|329127665|gb|AEB77607.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925] Length = 121 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I+ +RKA +QKE + + +E+G SI + + + + I+ D + Sbjct: 5 QKIQKLRKAKKLSQKEFGKKLGIHDEIILQWESGTSYPSINELIKISDVFNITTDSLLKD 64 Query: 94 EVIDRRYE 101 + + + Sbjct: 65 NINEYEDD 72 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +++ +RK K +SQ EFGK LG+ + + +E G + P I KI V D Sbjct: 1 MIFSQKIQKLRKAKKLSQKEFGKKLGIHDEIILQWESGTSYPSINELIKISDVFNITTDS 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLKDN 65 >gi|301054815|ref|YP_003793026.1| putative DNA-binding protein [Bacillus anthracis CI] gi|300376984|gb|ADK05888.1| putative DNA-binding protein; possible transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 374 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I D RK TQ+E+A +++V+ +E G I L + + IS D + Sbjct: 6 IHKVIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITLLPLLASYFNISIDELI 65 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 66 SYKPQMEQEDIKN 78 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +I + RK+K ++Q E +G+ +++S +E G++ P+I + Sbjct: 1 MKEISIHKVIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITLLPLLASYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK Sbjct: 61 IDELISYKPQMEQEDIKN 78 >gi|229187999|ref|ZP_04315094.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1] gi|228595479|gb|EEK53204.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1] Length = 116 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 41/92 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK++RK + TQ+++ + A++ FE G S + + + ++ D++ Sbjct: 2 IGEKIKELRKNSKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 E+ + I + ++S+ + Sbjct: 62 GRSEDPELNEEENKVVSEEGKNIMSLIESLSE 93 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++K +RK+ ++Q + G +G+ +S +E+G+ P + KI D++ Sbjct: 1 MIGEKIKELRKNSKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSK 194 E + ++ K Sbjct: 61 LGRSEDPELNEEENKVVSEEGK 82 >gi|256372684|ref|YP_003110508.1| transcriptional regulator of molybdate metabolism, XRE family [Acidimicrobium ferrooxidans DSM 10331] gi|256009268|gb|ACU54835.1| transcriptional regulator of molybdate metabolism, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 352 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 37 KDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 + +R+ +Q+++A AV E+G S+ A+ L + +S + ++D Sbjct: 6 RRLRRVRGLSQQQVADALGISRQAVAGIESGAFEPSLPVAMALARFFGVSVEELFD 61 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 30/67 (44%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + +R+ +G+SQ + LG+ ++ E G P + A + + ++ ++ Sbjct: 6 RRLRRVRGLSQQQVADALGISRQAVAGIESGAFEPSLPVAMALARFFGVSVEELFDTSGA 65 Query: 179 IVPKSIK 185 ++I+ Sbjct: 66 GREEAIE 72 >gi|94995013|ref|YP_603111.1| transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|94548521|gb|ABF38567.1| Transcriptional regulator [Streptococcus pyogenes MGAS10750] Length = 195 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ RK +Q+E+ +++ +EN I L L +++S D + Sbjct: 2 EIGQQMIRYRKQQTLSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++SN+E +T P+I + Q+ + LD Sbjct: 1 MEIGQQMIRYRKQQTLSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTK 86 >gi|294501848|ref|YP_003565548.1| Cro/CI family transcriptional regulator [Bacillus megaterium QM B1551] gi|294351785|gb|ADE72114.1| transcriptional regulator, Cro/CI family [Bacillus megaterium QM B1551] Length = 140 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KD G RIK R +Q+E+A N + ++ +E + SI L L N ++I+ D Sbjct: 1 MKDFGERIKHFRLKGGFSQEELANQLNVSRTTISKWECSKQTPSIFDFLSLCNCFQITLD 60 Query: 89 WIYDGEVIDRRY 100 + + + + Sbjct: 61 QLIEPSSYKQDH 72 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G R+K R G SQ E L + +T+S +E + P I + + LD Sbjct: 1 MKDFGERIKHFRLKGGFSQEELANQLNVSRTTISKWECSKQTPSIFDFLSLCNCFQITLD 60 Query: 171 WIY 173 + Sbjct: 61 QLI 63 >gi|260892586|ref|YP_003238683.1| helix-turn-helix domain protein [Ammonifex degensii KC4] gi|260864727|gb|ACX51833.1| helix-turn-helix domain protein [Ammonifex degensii KC4] Length = 349 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 35/104 (33%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G RIK+ R + + + +A A++ +E G+ L L + Sbjct: 6 EAARQIGLRIKEARLSRGLSLRALAEKVGVSAQAISKYERGLDIPGSGVLLRLAEALGVK 65 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 +++ ++ + L + A ++ Sbjct: 66 WEYFIRPRRVECLEPAYRKRSSLPAKELKAITTRAKEHLERYLE 109 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R +G+S + +G+ +S YE+G IP ++ + ++ Sbjct: 15 IKEARLSRGLSLRALAEKVGVSAQAISKYERGLDIPGSGVLLRLAEALGVKWEYFIRPRR 74 Query: 178 VIVPKSIKRAKGNQSSKKSK 197 V + R + + +K+ K Sbjct: 75 VECLEPAYRKRSSLPAKELK 94 >gi|220928988|ref|YP_002505897.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220928999|ref|YP_002505908.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220929010|ref|YP_002505919.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999316|gb|ACL75917.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] gi|219999327|gb|ACL75928.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] gi|219999338|gb|ACL75939.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 75 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +K +R +NKTQ+++A A +E+ I+ + L + Y +S D + Sbjct: 2 DIGENLKYLRNVHNKTQQDIAEILKISRQAYTHYESNKREPDIKTLVKLADYYMVSLDML 61 Query: 91 Y 91 Sbjct: 62 V 62 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG LK +R +Q + ++L + ++YE + P+IK K+ LD Sbjct: 1 MDIGENLKYLRNVHNKTQQDIAEILKISRQAYTHYESNKREPDIKTLVKLADYYMVSLDM 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|222530395|ref|YP_002574277.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457242|gb|ACM61504.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 104 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +KD+R +++E+A ESA+ +E G S + + + +++S D++ Sbjct: 2 NFGGILKDLRMQKKMSRQELAKMLELSESAIAKYEEGQRSPDLNTLIKIAKFFDVSTDYL 61 Query: 91 YDGEVIDRRYEDVTNK 106 I + D++ + Sbjct: 62 LGLTNIPKPEMDLSPE 77 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R K MS+ E K+L + S ++ YE+G+ P++ KI + D++ Sbjct: 7 LKDLRMQKKMSRQELAKMLELSESAIAKYEEGQRSPDLNTLIKIAKFFDVSTDYLLGLTN 66 Query: 178 VIVPK 182 + P+ Sbjct: 67 IPKPE 71 >gi|167462690|ref|ZP_02327779.1| DNA-binding protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384965|ref|ZP_08058621.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150262|gb|EFX43769.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 241 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 20/140 (14%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RIK+IRKA TQKE+A A ++ E + S+ + IS D Sbjct: 2 KIGDRIKNIRKALRYTQKEVAENAGISRMYLSDVEKNRYNPSLSVIEKIAEAMGISVD-- 59 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 RL ++ A + M+ E K G L + + Sbjct: 60 -----------------RLTGDSVSALIAERLGTMNMTYNELAKRTGTTIRYLEGIDDIK 102 Query: 151 -TIPEIKPARKIKQVTKKHL 169 + + KI V + Sbjct: 103 PDEGDYEVVGKIADVIGLNP 122 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K+IRK +Q E + G+ LS+ E+ R P + KI + +D Sbjct: 1 MKIGDRIKNIRKALRYTQKEVAENAGISRMYLSDVEKNRYNPSLSVIEKIAEAMGISVDR 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + GD V + + N + + K Sbjct: 61 L-TGDSVSALIAERLGTMNMTYNELAK 86 >gi|225378306|ref|ZP_03755527.1| hypothetical protein ROSEINA2194_03967 [Roseburia inulinivorans DSM 16841] gi|83596349|gb|ABC25509.1| transcriptional regulator [Roseburia inulinivorans DSM 16841] gi|225209873|gb|EEG92227.1| hypothetical protein ROSEINA2194_03967 [Roseburia inulinivorans DSM 16841] Length = 113 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 31/88 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRIK+ R TQ+ +A ++ E G S+ + N + + D + Sbjct: 8 IGTRIKERRAKKKWTQEMLASAVGISNPHMSNIERGRTKVSLGTLTDIANALDTTLDELI 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 ++ + + ++ Sbjct: 68 CDNLVRGKVVFDEEISQELKECNEEDIR 95 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD AIG R+K R K +Q +G+ N +SN E+GRT + I Sbjct: 1 MELDYCAIGTRIKERRAKKKWTQEMLASAVGISNPHMSNIERGRTKVSLGTLTDIANALD 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 LD + D ++ K + + +Q K+ ++ Sbjct: 61 TTLDELIC-DNLVRGKVVFDEEISQELKECNEE 92 >gi|39997635|ref|NP_953586.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39984527|gb|AAR35913.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298506575|gb|ADI85298.1| helix-turn-helix transcriptional regulator PuuR, cupin domain-containing [Geobacter sulfurreducens KN400] Length = 181 Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R N+ TQ+E+A A+ + ++ EN S SI + + + +S Sbjct: 2 KIGERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQEF 61 Query: 91 YD---GEVIDRRYEDVTNKKRLDPYAIGARL 118 + GE + + D + L Sbjct: 62 FSDPIGEDVVYGKDARVQPSADDAAVMVELL 92 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK +R ++Q E + +S E T P I + I V + Sbjct: 1 MKIGERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQE 60 Query: 172 IYF---GDEVIVPKSIK 185 + G++V+ K + Sbjct: 61 FFSDPIGEDVVYGKDAR 77 >gi|312868183|ref|ZP_07728385.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096288|gb|EFQ54530.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 158 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +RKA+N TQ E A ++++ +ENG S S + ++ +S+ I Sbjct: 2 IGENIKTLRKAHNLTQPEFAKIVGISRNSLSRYENGASSVSTELIDRICQKFNVSYIDIV 61 Query: 92 DGEV 95 E Sbjct: 62 GEEK 65 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +K++RK ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 1 MIGENIKTLRKAHNLTQPEFAKIVGISRNSLSRYENGASSVSTELIDRICQKFNVSYIDI 60 Query: 173 YFGDEVIVP 181 ++++ P Sbjct: 61 VGEEKLLTP 69 >gi|223983799|ref|ZP_03633967.1| hypothetical protein HOLDEFILI_01248 [Holdemania filiformis DSM 12042] gi|223964238|gb|EEF68582.1| hypothetical protein HOLDEFILI_01248 [Holdemania filiformis DSM 12042] Length = 83 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E R++ K+ R++ +RKA Q+E+A + ENG + SI A + + Sbjct: 12 EWRRFMKN---RLEALRKARGIKQEELAAALEVSRQTIGSLENGRYNPSILLAFKIARYF 68 Query: 84 EISFDWIYDGEVIDR 98 ++S + ++ E + Sbjct: 69 DVSIEEVFIYEEESK 83 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL+++RK +G+ Q E L + T+ + E GR P I A KI + ++ + Sbjct: 16 FMKNRLEALRKARGIKQEELAAALEVSRQTIGSLENGRYNPSILLAFKIARYFDVSIEEV 75 Query: 173 YFGDEV 178 + +E Sbjct: 76 FIYEEE 81 >gi|187934809|ref|YP_001885121.1| transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722962|gb|ACD24183.1| transcriptional regulator [Clostridium botulinum B str. Eklund 17B] Length = 148 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K +R N TQ+E+A +S++ + E + + L + + ++ D++ Sbjct: 2 LADKVKYLRNNLNLTQEELANKLGISQSSIGMIERNKRPAGRKMLIKLADFFNVTVDYLL 61 Query: 92 DGEVIDRRYEDVTNKKR 108 + D K Sbjct: 62 SDSDENNSVNDGGVTKD 78 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +R + ++Q E LG+ S++ E+ + K K+ +D++ + Sbjct: 6 VKYLRNNLNLTQEELANKLGISQSSIGMIERNKRPAGRKMLIKLADFFNVTVDYLLSDSD 65 Query: 178 V 178 Sbjct: 66 E 66 >gi|154499756|ref|ZP_02037794.1| hypothetical protein BACCAP_03413 [Bacteroides capillosus ATCC 29799] gi|150271354|gb|EDM98611.1| hypothetical protein BACCAP_03413 [Bacteroides capillosus ATCC 29799] Length = 111 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K++G R+ D RK TQ+ +A A+ V+ E G + L + + +IS Sbjct: 3 ELLKEMGQRMLDRRKQLKLTQEALAKMAHVTPQTVSTAELGTKAMRPETMLKICDALDIS 62 Query: 87 FDWIYDGEVID 97 D++ G+V++ Sbjct: 63 TDYLLRGQVVE 73 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 23/67 (34%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 RK ++Q K+ + T+S E G + KI D++ G V Sbjct: 16 RKQLKLTQEALAKMAHVTPQTVSTAELGTKAMRPETMLKICDALDISTDYLLRGQVVEGD 75 Query: 182 KSIKRAK 188 + K Sbjct: 76 TRLLNQK 82 >gi|290890363|ref|ZP_06553439.1| hypothetical protein AWRIB429_0829 [Oenococcus oeni AWRIB429] gi|290479981|gb|EFD88629.1| hypothetical protein AWRIB429_0829 [Oenococcus oeni AWRIB429] Length = 67 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N +Q+++A A++ +E+G + + + L ++S D + G Sbjct: 6 EQLKKYRNKKNLSQEDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLDTLVLG 65 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK R K +SQ + L + +S +E G T P++ K+ ++ LD Sbjct: 1 MAKFPEQLKKYRNKKNLSQEDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLD 60 Query: 171 WIYFGDE 177 + G E Sbjct: 61 TLVLGSE 67 >gi|317488245|ref|ZP_07946813.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] gi|316912657|gb|EFV34198.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ GT I+ +R+ TQ+++A + AV+ +E G I L + Sbjct: 4 RNTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVET 63 Query: 90 IYDG 93 + DG Sbjct: 64 LLDG 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 36/67 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G ++++R+++G++Q + LG+ + +S +E+G P+I+ + + Sbjct: 1 MDARNTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTP 60 Query: 169 LDWIYFG 175 ++ + G Sbjct: 61 VETLLDG 67 >gi|256960587|ref|ZP_05564758.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384412|ref|ZP_06630293.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|293389773|ref|ZP_06634215.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|312906563|ref|ZP_07765564.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312910745|ref|ZP_07769584.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|256951083|gb|EEU67715.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078260|gb|EFE15624.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|291080931|gb|EFE17894.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|310627432|gb|EFQ10715.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311289008|gb|EFQ67564.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 257 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R N+ TQ+++A + AV+ +E G SI L L + Y +S D + G Sbjct: 7 LKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 Query: 96 I 96 Sbjct: 67 Y 67 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK+ R +Q + + L + +S +E G++IP I + + +D Sbjct: 1 MLIQTILKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDE 60 Query: 172 IYFG 175 + G Sbjct: 61 LIQG 64 >gi|228956760|ref|ZP_04118546.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802948|gb|EEM49780.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 117 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 5/119 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R+ + TQ + ++ +E+G L + Y++S D++ Sbjct: 3 LGERLRTCREKSGYTQTYITEKLEIHRGTLSSYESGRRKPDYDTLSKLADIYKVSVDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG-KLLGMPNSTLSNYEQG 149 R + + + +G +++ + + + + L M N E+ Sbjct: 63 GRSTDKRLTAEQDKQATV----MGRKIEELISNLSKEEQRKAWEQLEMYVQYQQNKERK 117 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G RL++ R+ G +Q + L + TLS+YE GR P+ K+ + K +D+ Sbjct: 1 MTLGERLRTCREKSGYTQTYITEKLEIHRGTLSSYESGRRKPDYDTLSKLADIYKVSVDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|257791038|ref|YP_003181644.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474935|gb|ACV55255.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 197 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ GT I+ +R+ TQ+++A + AV+ +E G I L + Sbjct: 4 RNTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVET 63 Query: 90 IYDG 93 + DG Sbjct: 64 LLDG 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 36/67 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G ++++R+++G++Q + LG+ + +S +E+G P+I+ + + Sbjct: 1 MDARNTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTP 60 Query: 169 LDWIYFG 175 ++ + G Sbjct: 61 VETLLDG 67 >gi|169828330|ref|YP_001698488.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992818|gb|ACA40358.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 148 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 3/108 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI- 90 +G I+ +RK + +Q+++A N + +ENG I L + ++++ D + Sbjct: 5 IGMNIRVLRKRHKLSQEQLAEKVNVSRQTIAKWENGEAIPDIYKFKMLGDIFQVTIDQLS 64 Query: 91 --YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + E +R + ++ + + M QI G L Sbjct: 65 QNLNEEEANRISPKGKQFFGVVKVGERGQIVIPKHAREMYQIHAGDKL 112 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ +RK +SQ + + + + T++ +E G IP+I + + + + +D Sbjct: 3 NMIGMNIRVLRKRHKLSQEQLAEKVNVSRQTIAKWENGEAIPDIYKFKMLGDIFQVTIDQ 62 Query: 172 I 172 + Sbjct: 63 L 63 >gi|150017031|ref|YP_001309285.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903496|gb|ABR34329.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 112 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + D+G RIK R+ N T+++ + + + ++ E G S+ + + + IS D Sbjct: 9 YIDIGKRIKAERERNGLTREKFSELVSISPTYLSQIELGQRHPSLPTTIKIASTLHISLD 68 Query: 89 WIYDGE-VIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ GE ++ +D+ + LK I Sbjct: 69 FLVYGERALNVNKDDLIDIINHAHEKDLYVLKEI 102 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + N ++ IG R+K+ R+ G+++ +F +L+ + + LS E G+ P + KI Sbjct: 1 MINLNNINYIDIGKRIKAERERNGLTREKFSELVSISPTYLSQIELGQRHPSLPTTIKIA 60 Query: 163 QVTKKHLDWIYFGD 176 LD++ +G+ Sbjct: 61 STLHISLDFLVYGE 74 >gi|293399898|ref|ZP_06644044.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306298|gb|EFE47541.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 135 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K+ R TQ+ +A ++ +E I + L Y IS D + Sbjct: 2 KIGVKLKEARLQAGLTQENVAEEIQVTRQTISNWETEKSFPDIVSVIKLSTLYNISLDKL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G+ + + + Sbjct: 62 LKGDEEMIEHLEKSTN 77 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK R G++Q + + + T+SN+E ++ P+I K+ + LD + GDE Sbjct: 7 LKEARLQAGLTQENVAEEIQVTRQTISNWETEKSFPDIVSVIKLSTLYNISLDKLLKGDE 66 Query: 178 VIVPKSIKRAKGNQSSKK 195 ++ K +S++K Sbjct: 67 EMIEHLEKSTNIVKSNQK 84 >gi|229815891|ref|ZP_04446215.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM 13280] gi|229808586|gb|EEP44364.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM 13280] Length = 201 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG+RI+ +R+A TQ E+A A +V +E G ++ + D + Sbjct: 6 KVGSRIRILREAAGLTQSELAATAYVTRQSVGNWERGNTLPDVQSLQLVAKALNTKVDGL 65 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + D E +++L Sbjct: 66 LGDGLPDMLEETAEARRQLTH 86 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 32/58 (55%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +R++ +R+ G++Q E + ++ N+E+G T+P+++ + + + +D + Sbjct: 9 SRIRILREAAGLTQSELAATAYVTRQSVGNWERGNTLPDVQSLQLVAKALNTKVDGLL 66 >gi|167574113|ref|ZP_02366987.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia oklahomensis C6786] Length = 191 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R+ T E A A + ++ E G + SI + + ++ + Sbjct: 15 IGIKIRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTMQYFV 74 Query: 92 D 92 D Sbjct: 75 D 75 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R+ ++ E G+ LS E+GR P I I + + + Sbjct: 19 IRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTMQYFV 74 >gi|167567036|ref|ZP_02359952.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia oklahomensis EO147] Length = 191 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R+ T E A A + ++ E G + SI + + ++ + Sbjct: 15 IGIKIRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTMQYFV 74 Query: 92 D 92 D Sbjct: 75 D 75 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R+ ++ E G+ LS E+GR P I I + + + Sbjct: 19 IRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTMQYFV 74 >gi|320102695|ref|YP_004178286.1| helix-turn-helix domain-containing protein [Isosphaera pallida ATCC 43644] gi|319749977|gb|ADV61737.1| helix-turn-helix domain protein [Isosphaera pallida ATCC 43644] Length = 222 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 4/111 (3%) Query: 13 SLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 +L+ I E+ + + R+K +R N + +E + S ++ E G + + Sbjct: 27 ALRREGFIDPSEV--VAERLRQRVKTLRTERNWSLEEFSKACGVSRSMLSQIERGEANPT 84 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYA--IGARLKSI 121 + + + +S + D E + + Y R++++ Sbjct: 85 LAVMFRIAQVFGMSLGELIDAPSATSGIEVIRADDQAHTYRSDPDCRIRTL 135 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K++R ++ S EF K G+ S LS E+G P + +I QV L + Sbjct: 45 RQRVKTLRTERNWSLEEFSKACGVSRSMLSQIERGEANPTLAVMFRIAQVFGMSLGELID 104 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKD 199 + RA + +S D Sbjct: 105 APSATSGIEVIRADDQAHTYRSDPD 129 >gi|302382805|ref|YP_003818628.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193433|gb|ADL01005.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 475 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R+ TQ MA S +N E S + L L + Y++ + Sbjct: 11 LGARVKRLRRDRGLTQTAMAGDLGVSPSYLNHIERNQRPVSAQLLLRLADAYDVDLRTL 69 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +GAR+K +R+D+G++Q LG+ S L++ E+ + + ++ L Sbjct: 9 LFLGARVKRLRRDRGLTQTAMAGDLGVSPSYLNHIERNQRPVSAQLLLRLADAYDVDL 66 >gi|168183849|ref|ZP_02618513.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|182673110|gb|EDT85071.1| putative DNA-binding protein [Clostridium botulinum Bf] Length = 148 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK +Q+++A + V+ +E + A L Y +S+D++ Sbjct: 3 LGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDYLI 62 Query: 92 DGEVID 97 I Sbjct: 63 SENYIS 68 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 36/65 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +L +RK G+SQ + + L + T+S +E +T+PE+ A+ + ++ D+ Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 172 IYFGD 176 + + Sbjct: 61 LISEN 65 >gi|158339379|ref|YP_001520556.1| transcriptional regulator with ATPase activity [Acaryochloris marina MBIC11017] gi|158309620|gb|ABW31237.1| transcriptional regulator with ATPase activity [Acaryochloris marina MBIC11017] Length = 216 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK ++K+Q +A AVN FE+G S+ A L +++S + ++ Sbjct: 3 NRLKELRKLHHKSQAALARDLGVSRQAVNGFESGKFDPSLEMAFKLAKLFKVSIEDVFIY 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR 117 E + V K+ + A Sbjct: 63 EAENPMQTLVKRYKKYFGFERFAP 86 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW-I 172 + RLK +RK SQ + LG+ ++ +E G+ P ++ A K+ ++ K ++ Sbjct: 1 MKNRLKELRKLHHKSQAALARDLGVSRQAVNGFESGKFDPSLEMAFKLAKLFKVSIEDVF 60 Query: 173 YFGDEVIVPKSIKRAK 188 + E + +KR K Sbjct: 61 IYEAENPMQTLVKRYK 76 >gi|91794616|ref|YP_564267.1| transciptional regulator [Shewanella denitrificans OS217] gi|91716618|gb|ABE56544.1| transciptional regulator [Shewanella denitrificans OS217] Length = 229 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK RK TQ +A ++ ++L+E+G S L + +++ G Sbjct: 4 ERIKQRRKELGLTQPSIAKTIGLTKATISLWESGSTSPKGENLHALAKALRCAPEFLLFG 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + + L Sbjct: 64 NDSIKPEPNAEWAGGFETWGSNSPL 88 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 39/71 (54%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+K RK+ G++Q K +G+ +T+S +E G T P+ + + + + +++ Sbjct: 1 MMNERIKQRRKELGLTQPSIAKTIGLTKATISLWESGSTSPKGENLHALAKALRCAPEFL 60 Query: 173 YFGDEVIVPKS 183 FG++ I P+ Sbjct: 61 LFGNDSIKPEP 71 >gi|206900818|ref|YP_002250397.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] gi|206739921|gb|ACI18979.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] Length = 105 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 40/91 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RI++ RK +N +++A S ++L E G+ + S++ + + + + Sbjct: 2 NVGKRIRETRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAKAFNLPTSYF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + K LD ++ I Sbjct: 62 FSEDNDETIETFLRTKTSLDEDERRMIIQLI 92 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ RK M + + G+ S +S E+G P +K +I + + Sbjct: 1 MNVGKRIRETRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAKAFNLPTSY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + D ++ R K + + + Sbjct: 61 FFSEDNDETIETFLRTKTSLDEDERRM 87 >gi|187777952|ref|ZP_02994425.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC 15579] gi|187774880|gb|EDU38682.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC 15579] Length = 384 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A +++V+ +E+G+ I + + IS D + Sbjct: 8 NIGNCIVHKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPEIATYFNISVDEL 67 Query: 91 Y 91 Sbjct: 68 L 68 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L IG + RK+KG++Q + +G+ +++S +E G + P+I +I Sbjct: 1 MINLRGLNIGNCIVHKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPEIATYF 60 Query: 166 KKHLDWIYFGDEVIVPKSIKR 186 +D + + + IK+ Sbjct: 61 NISVDELLGYSPQLTKEDIKK 81 >gi|160913567|ref|ZP_02076257.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] gi|158434028|gb|EDP12317.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] Length = 227 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G I RK TQ+++ +++ +ENG L + EI+ Sbjct: 4 QRKIGIFIATCRKEKGLTQEQLGELLGVTNKSISKWENGKSLPDPSLYKPLCDILEINLI 63 Query: 89 WIYDGE 94 ++DGE Sbjct: 64 ELFDGE 69 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 49/81 (60%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D IG + + RK+KG++Q + G+LLG+ N ++S +E G+++P+ + + + + Sbjct: 1 MMDQRKIGIFIATCRKEKGLTQEQLGELLGVTNKSISKWENGKSLPDPSLYKPLCDILEI 60 Query: 168 HLDWIYFGDEVIVPKSIKRAK 188 +L ++ G+ + K +++A Sbjct: 61 NLIELFDGERIAEDKVVEKAD 81 >gi|289449565|ref|YP_003474504.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184112|gb|ADC90537.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 210 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 49/114 (42%), Gaps = 6/114 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++ R TQ+E+A +AV +E G + + + ++ D++ Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKMIADALGVTVDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL---KSIRKDKGMSQIEF--GKLLGMPN 140 D + + L YA+ A+L K I+ + + + E+ +++ + Sbjct: 63 D-KDNAIDLSIIKKPIDLAKYALNAKLGVRKKIKIKEQIVRDEYPDAEIIMLTV 115 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 37/71 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++++ R + G++Q E +++ + + ++ +E GR +P++ + I +D++ Sbjct: 5 EKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKMIADALGVTVDYLLDK 64 Query: 176 DEVIVPKSIKR 186 D I IK+ Sbjct: 65 DNAIDLSIIKK 75 >gi|296141343|ref|YP_003648586.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029477|gb|ADG80247.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 466 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 1/103 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +RK +Q +A S +N E+ + S+ L + + + + + Sbjct: 6 VGARLRGLRKERGLSQASLAEALEISPSYLNQIEHDVRPLSVPVLLKITDVFGVDTSFFN 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI-RKDKGMSQIEFG 133 + E +D L + R G ++ Sbjct: 66 SQDQTRLIAELREVTMDVDAPTSTEELSDLARDHPGFARAMVA 108 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 38/94 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +GARL+ +RK++G+SQ + L + S L+ E + KI V Sbjct: 1 MSKTFVGARLRGLRKERGLSQASLAEALEISPSYLNQIEHDVRPLSVPVLLKITDVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + D+ + ++ + + S ++ Sbjct: 61 TSFFNSQDQTRLIAELREVTMDVDAPTSTEELSD 94 >gi|225026228|ref|ZP_03715420.1| hypothetical protein EUBHAL_00469 [Eubacterium hallii DSM 3353] gi|224956479|gb|EEG37688.1| hypothetical protein EUBHAL_00469 [Eubacterium hallii DSM 3353] Length = 141 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RIK R+A N TQ+E+A N + V++ E G+ T + + + N ++S D Sbjct: 41 KAVGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVSADA 100 Query: 90 IY 91 + Sbjct: 101 LL 102 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 I R +D A+G R+K+ R+ K ++Q E L+ + + +S E+G Sbjct: 19 IIHQYTNFRPNYRSEGGAMMDLKAVGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERG 78 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + ++ I D + + + K K ++K Sbjct: 79 LKVTKLDTFVAIANALDVSADALLIDVVTHSVTGVTNELSDMIEKLPKDEQK 130 >gi|254510314|ref|ZP_05122381.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacteraceae bacterium KLH11] gi|221534025|gb|EEE37013.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacteraceae bacterium KLH11] Length = 211 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 4/120 (3%) Query: 4 NPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 P L + + +T + R+K+ R+A + + +A + S V+ Sbjct: 10 RPELTLRYATRMDSA--MTESADDILNLLPARLKEARRAKGLSLEAVANLSGVSRSMVSQ 67 Query: 64 FENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK--RLDPYAIGARLKSI 121 E G S +I L ++ F + DG + + E + + +D R++ + Sbjct: 68 IERGESSPTISTLWNLTRALQVDFAGLLDGAKTNDQIEVLRRSEVPSIDNMGQNCRIRIL 127 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ KG+S L G+ S +S E+G + P I + + + + Sbjct: 37 PARLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLLD 96 Query: 175 G 175 G Sbjct: 97 G 97 >gi|153814674|ref|ZP_01967342.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC 27756] gi|317501120|ref|ZP_07959326.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium 8_1_57FAA] gi|331090138|ref|ZP_08339026.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848168|gb|EDK25086.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC 27756] gi|316897507|gb|EFV19572.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium 8_1_57FAA] gi|330402084|gb|EGG81656.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium 3_1_46FAA] Length = 124 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ +RK ++ TQ + + N A + +E G + + + N Y IS + + Sbjct: 5 QLAANLQRLRKDHHFTQTQFSKKLNISRQAYSNYETGKRIPDLDIIIRIANIYHISLENL 64 Query: 91 YD 92 Sbjct: 65 LT 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + A L+ +RKD +Q +F K L + SNYE G+ IP++ +I + Sbjct: 1 MSNIQLAANLQRLRKDHHFTQTQFSKKLNISRQAYSNYETGKRIPDLDIIIRIANIYHIS 60 Query: 169 LDWIYF 174 L+ + Sbjct: 61 LENLLT 66 >gi|125974945|ref|YP_001038855.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125715170|gb|ABN53662.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 142 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 5/91 (5%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R N +QK++A + +E G L Y +S D++ Sbjct: 7 LRQLRTEKNLSQKDVADAIGVDRTTYTKYETGKSQPDFVTIQKLAEFYSVSVDYLLGRTD 66 Query: 96 IDRRYEDVT-----NKKRLDPYAIGARLKSI 121 I Y + D +K Sbjct: 67 IRNPYIPEEYTQKHKVTKRDLMQYEDFIKQA 97 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 36/86 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L+ +R +K +SQ + +G+ +T + YE G++ P+ +K+ + +D+ Sbjct: 1 MPFNEILRQLRTEKNLSQKDVADAIGVDRTTYTKYETGKSQPDFVTIQKLAEFYSVSVDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + ++ P + K Sbjct: 61 LLGRTDIRNPYIPEEYTQKHKVTKRD 86 >gi|291542798|emb|CBL15908.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 117 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 40/98 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +K +G RIK R + TQ++++ + ++ E G S+ + + N Sbjct: 1 MELDYKAIGKRIKIARIKADLTQEKLSEMVGVSPTHMSNVETGTTRVSLTTIVGIANALG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 I+ D + VI + + + + ++ IR Sbjct: 61 ITSDDLLCDSVIKAKVQFEKDIALVLEDCDEYEIRVIR 98 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD AIG R+K R ++Q + +++G+ + +SN E G T + I Sbjct: 1 MELDYKAIGKRIKIARIKADLTQEKLSEMVGVSPTHMSNVETGTTRVSLTTIVGIANALG 60 Query: 167 KHLDWIYFGDEVIVPKSIKR 186 D + + ++ Sbjct: 61 ITSDDLLCDSVIKAKVQFEK 80 >gi|320012637|gb|ADW07487.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 206 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 +T + V RI+ +R A + +E+A A+ +S ++ ENG ++ + L Sbjct: 3 PVTQNDDELDSLVRKRIRALRVAQGWSLEELAGRAHIGQSTLSRIENGRRRLALDQLVTL 62 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 + S D + + D + Sbjct: 63 ARALDTSLDQLVETASDDVVTSPTIDAAH 91 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 N LD R++++R +G S E + STLS E GR + + Sbjct: 5 TQNDDELDSLV-RKRIRALRVAQGWSLEELAGRAHIGQSTLSRIENGRRRLALDQLVTLA 63 Query: 163 QVTKKHLDWIYF--GDEVIVPKSIKRAKG 189 + LD + D+V+ +I A G Sbjct: 64 RALDTSLDQLVETASDDVVTSPTIDAAHG 92 >gi|228982712|ref|ZP_04142971.1| Prophage LambdaBa02, repressor protein [Bacillus thuringiensis Bt407] gi|228776895|gb|EEM25203.1| Prophage LambdaBa02, repressor protein [Bacillus thuringiensis Bt407] Length = 133 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ RK + TQ+E+AI N ++ ++ +E G + SI L + +S D++ Sbjct: 31 KRLRLARKWSGLTQEELAIKVNTKKTTISNYETGYSTPSIEMLDLLCDVLNVSSDFLLGR 90 Query: 94 EVIDRRYEDVTNKKRL 109 N Sbjct: 91 TDEPSLSSSQVNHINQ 106 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ RK G++Q E + +T+SNYE G + P I+ + V D++ Sbjct: 28 VFKKRLRLARKWSGLTQEELAIKVNTKKTTISNYETGYSTPSIEMLDLLCDVLNVSSDFL 87 Query: 173 YFGDEVIVPKSIKRAKGNQS 192 + S + NQ Sbjct: 88 LGRTDEPSLSSSQVNHINQE 107 >gi|169335193|ref|ZP_02862386.1| hypothetical protein ANASTE_01601 [Anaerofustis stercorihominis DSM 17244] gi|169257931|gb|EDS71897.1| hypothetical protein ANASTE_01601 [Anaerofustis stercorihominis DSM 17244] Length = 120 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K VG +IK+ RK TQ+ +A + S ++ E+G+ S+ + + +S D Sbjct: 5 YKKVGGKIKEARKKQGYTQETLAEIIDLSASHLSHVESGIAKISLPTIVAIAKTLNVSLD 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + E+ ++ K LD +K Sbjct: 65 DLLSLEIDNQSIYLT--LKELDRIFKNCTVKE 94 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 39/96 (40%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +++ +G ++K RK +G +Q +++ + S LS+ E G + I + Sbjct: 1 MQINYKKVGGKIKEARKKQGYTQETLAEIIDLSASHLSHVESGIAKISLPTIVAIAKTLN 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 LD + + + + ++ K +K+ Sbjct: 61 VSLDDLLSLEIDNQSIYLTLKELDRIFKNCTVKEKN 96 >gi|307301170|ref|ZP_07580932.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307321071|ref|ZP_07600476.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306893243|gb|EFN24024.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903626|gb|EFN34213.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 192 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 32/80 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + I + + R++++R A + T ++A + + ++ E G S + + L Sbjct: 1 MENAIAPLEETMAMRLRELRMARDLTLDDLAGRSGVSRAMISRIERGEASPTAQLLAKLC 60 Query: 81 NEYEISFDWIYDGEVIDRRY 100 + + ++ E + Sbjct: 61 SALGTTLSALFASERSEASP 80 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 29/77 (37%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R + ++ + G+ + +S E+G P + K+ L ++ Sbjct: 12 MAMRLRELRMARDLTLDDLAGRSGVSRAMISRIERGEASPTAQLLAKLCSALGTTLSALF 71 Query: 174 FGDEVIVPKSIKRAKGN 190 + + A+ Sbjct: 72 ASERSEASPLARHAEQR 88 >gi|297538615|ref|YP_003674384.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297257962|gb|ADI29807.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 212 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 38/92 (41%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 + + + + + +GT I+ +R +N T +++ A ++ EN + +TS+ Sbjct: 6 EIEDVKVDERNKSLGRHLGTTIRQLRLEHNLTIADVSERAGISRGMLSKIENSLAATSLE 65 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 L N ++ ++ + R + K Sbjct: 66 TLEQLANALGVTLSKLFQNYNLPRGAAQLVKK 97 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 6/56 (10%), Positives = 21/56 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R + ++ + + G+ LS E ++ ++ L ++ Sbjct: 27 IRQLRLEHNLTIADVSERAGISRGMLSKIENSLAATSLETLEQLANALGVTLSKLF 82 >gi|239983769|ref|ZP_04706293.1| transcriptional regulator [Streptomyces albus J1074] gi|291455574|ref|ZP_06594964.1| transcriptional regulator [Streptomyces albus J1074] gi|291358523|gb|EFE85425.1| transcriptional regulator [Streptomyces albus J1074] Length = 200 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R A + +E+A AN +S+++ ENG ++ + L + + D + + Sbjct: 14 KRIRALRLAQGWSLEELAGRANLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQLVET 73 Query: 94 EVIDRRYEDVTN 105 D V + Sbjct: 74 ASDDVIISPVID 85 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + S+LS E GR + + + LD + Sbjct: 13 RKRIRALRLAQGWSLEELAGRANLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQLVE 72 Query: 175 --GDEVIVPKSIKRAKGNQ 191 D+VI+ I A+G Sbjct: 73 TASDDVIISPVIDSARGRM 91 >gi|257083082|ref|ZP_05577443.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256991112|gb|EEU78414.1| conserved hypothetical protein [Enterococcus faecalis Fly1] Length = 257 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R N+ TQ+++A + AV+ +E G SI L L + Y +S D + G Sbjct: 7 LKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 Query: 96 I 96 Sbjct: 67 Y 67 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK+ R +Q + + L + +S +E G++IP I + + +D Sbjct: 1 MLIQTILKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDE 60 Query: 172 IYFG 175 + G Sbjct: 61 LIQG 64 >gi|220908355|ref|YP_002483666.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864966|gb|ACL45305.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 224 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ + +Q ++A AVN FE+G S+ A + + ++ + ++ Sbjct: 3 NRLKELRQRRSWSQADLARSLGISRQAVNGFESGKFDPSLEMAFKIARLFNVAIEDVFVY 62 Query: 94 EVI 96 E Sbjct: 63 EAR 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R+ + SQ + + LG+ ++ +E G+ P ++ A KI ++ ++ ++ Sbjct: 1 MQNRLKELRQRRSWSQADLARSLGISRQAVNGFESGKFDPSLEMAFKIARLFNVAIEDVF 60 Query: 174 -FGDEVIVPKSIKRAKG 189 + +P ++R K Sbjct: 61 VYEARHSMPTLVERVKN 77 >gi|319945875|ref|ZP_08020125.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747940|gb|EFW00184.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 116 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 35/82 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K++RK + TQ ++A + A +E G + + + +S D++ Sbjct: 2 EFSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPY 112 D + +++ N + L Sbjct: 62 VDNSDEHLKEDELDNVELLFRM 83 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK++RK ++Q++ + LG+ +++E+G P KI QV +D+ Sbjct: 1 MEFSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDY 60 Query: 172 I-------YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DE+ + + R N +++ K K Sbjct: 61 LVDNSDEHLKEDELDNVELLFRMNSNGLTEEEKAIFKKE 99 >gi|251789524|ref|YP_003004245.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538145|gb|ACT06766.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + + ++K++G RI RK TQ+++A + + +E G S L Sbjct: 11 AMNTKDEPFFKELGARIAQARKELQLTQQQLAEQLGIAQQTMAHYEGGRLKVSASLLPQL 70 Query: 80 RNEYEISFDWIY 91 +S D + Sbjct: 71 ATILNLSLDELL 82 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +GAR+ RK+ ++Q + + LG+ T+++YE GR ++ + LD Sbjct: 20 FKELGARIAQARKELQLTQQQLAEQLGIAQQTMAHYEGGRLKVSASLLPQLATILNLSLD 79 Query: 171 WIY 173 + Sbjct: 80 ELL 82 >gi|149004413|ref|ZP_01829153.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP14-BS69] gi|147757662|gb|EDK64680.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP14-BS69] Length = 120 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ +QKE+A + E ++ +ENG L + + +S ++ Sbjct: 2 NRLKELRQEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKVKQLADYFGVSVGYLLGY 61 Query: 94 EVID 97 E Sbjct: 62 ESNP 65 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R++K +SQ E K + + TLS +E G + + + +++ + ++ Sbjct: 1 MNRLKELRQEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKVKQLADYFGVSVGYLLG 60 Query: 175 GDEVIVPK 182 + + + Sbjct: 61 YESNPLER 68 >gi|258508248|ref|YP_003170999.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|257148175|emb|CAR87148.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus GG] gi|259649565|dbj|BAI41727.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 176 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ +RK + +Q E+A A++ +EN + ++ +S+ + Sbjct: 2 FGERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADLL 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 E + + + Sbjct: 62 GNEPPEPKPAANRPSSAI 79 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL +RK G+SQ E + +G+ +S YE P+++ ++ + + Sbjct: 1 MFGERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADL 60 Query: 173 YFGDEVIVPK 182 G+E PK Sbjct: 61 L-GNEPPEPK 69 >gi|191638074|ref|YP_001987240.1| Repressor (Gp132 protein) [Lactobacillus casei BL23] gi|190712376|emb|CAQ66382.1| Repressor (Gp132 protein) [Lactobacillus casei BL23] gi|327385302|gb|AEA56776.1| Transcriptional regulator, XRE family [Lactobacillus casei BD-II] Length = 112 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI +R+ +++Q E+A S V ++E S + L Y++S D++ Sbjct: 4 GQRISLLREKKHQSQAELAKTLGIAASTVGMWETNKRKPSSKMLKKLSVLYDVSIDYLLG 63 Query: 93 GEVIDRRYEDVTN 105 + + + Sbjct: 64 NDSTTDKTPSEVD 76 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+ +R+ K SQ E K LG+ ST+ +E + P K +K+ + +D+ Sbjct: 1 MNTGQRISLLREKKHQSQAELAKTLGIAASTVGMWETNKRKPSSKMLKKLSVLYDVSIDY 60 Query: 172 IYFGDEVIVPKSIK 185 + D + Sbjct: 61 LLGNDSTTDKTPSE 74 >gi|325970144|ref|YP_004246335.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025382|gb|ADY12141.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 112 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 30/81 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G RI++ R TQ ++ S + E+G ++ + + + + D Sbjct: 5 YELLGQRIREARIKTGMTQATLSGIIGLSPSHYSHIESGKAKINLPTLVAIAQALDTTID 64 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + + + K L Sbjct: 65 SLLYDSIPVLIDSYDKDFKDL 85 Score = 57.7 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 1/97 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D +G R++ R GM+Q ++G+ S S+ E G+ + I Q Sbjct: 1 MGIDYELLGQRIREARIKTGMTQATLSGIIGLSPSHYSHIESGKAKINLPTLVAIAQALD 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 +D + + D + V + +D+K + Sbjct: 61 TTIDSLLY-DSIPVLIDSYDKDFKDLLEDCTRDEKET 96 >gi|317506959|ref|ZP_07964728.1| hypothetical protein HMPREF9336_01099 [Segniliparus rugosus ATCC BAA-974] gi|316254717|gb|EFV14018.1| hypothetical protein HMPREF9336_01099 [Segniliparus rugosus ATCC BAA-974] Length = 148 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 18/127 (14%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 + R+ T+ ++A S + +E+G S +I + Sbjct: 14 LAHARERRRMTRADLARVTGLSTSTIQKWESGAASPNIETLAKAAAALGVPL-------- 65 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 ++ + L R G+SQ + + G+ L+ E+G + Sbjct: 66 ----------RRIVKVPPSRRTLADWRHLAGLSQTKLARAAGLTTPALAALERGESQLTD 115 Query: 156 KPARKIK 162 A +I Sbjct: 116 DKADRIA 122 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L R+ + M++ + ++ G+ ST+ +E G P I+ K L Sbjct: 14 LAHARERRRMTRADLARVTGLSTSTIQKWESGAASPNIETLAKAAAALGVPL 65 >gi|302391440|ref|YP_003827260.1| XRE family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203517|gb|ADL12195.1| transcriptional regulator, XRE family [Acetohalobium arabaticum DSM 5501] Length = 131 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 1/103 (0%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K +RK T +++A ++ ++ + +EN I + L + +S D++ Sbjct: 2 NFSQRLKQLRKEKGLTLEKLADEFDRSKTTFSNYENNHRKPDIDLTIELAEYFNVSIDYL 61 Query: 91 Y-DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + E E + S RKD + + Sbjct: 62 LGNTEEKRTADEIKEVISENQELFKLWEIISDRKDLQLLLQQV 104 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +RK+KG++ + +T SNYE P+I ++ + +D+ Sbjct: 1 MNFSQRLKQLRKEKGLTLEKLADEFDRSKTTFSNYENNHRKPDIDLTIELAEYFNVSIDY 60 Query: 172 IYFGDEV 178 + E Sbjct: 61 LLGNTEE 67 >gi|187777701|ref|ZP_02994174.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC 15579] gi|187774629|gb|EDU38431.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC 15579] Length = 130 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +RK +Q E+ N ++ +E G + + + L + +EIS D + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELV 62 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +L S+RK KG+SQ E G L + T+S +E G T PE++ + + LD Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + + + N+ Sbjct: 61 LVMDVKAKESTKTEPLVMNR 80 >gi|114328663|ref|YP_745820.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316837|gb|ABI62897.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 184 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI++ R +Q+++A + +E G+ S + + + W + Sbjct: 54 VGNRIRERRVMLGLSQQQLAQMIGVTYQQAHKYERGLNRISAGRLYQISHVLNVPISWFF 113 Query: 92 DGEVIDRRYEDVTNKKRL 109 DG + + D+T ++R+ Sbjct: 114 DGFATESKTADLTTRQRM 131 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 I + +G R++ R G+SQ + +++G+ YE+G Sbjct: 30 ILAVTSRTASGGRAAARASDADRHVGNRIRERRVMLGLSQQQLAQMIGVTYQQAHKYERG 89 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFG 175 +I V + W + G Sbjct: 90 LNRISAGRLYQISHVLNVPISWFFDG 115 >gi|307307842|ref|ZP_07587570.1| putative phage repressor [Shewanella baltica BA175] gi|306910061|gb|EFN40499.1| putative phage repressor [Shewanella baltica BA175] Length = 217 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + RIK RK QK++A + A++ +E + + S L L N +++ Sbjct: 2 KIMDKLSNRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTNPSGELLLKLANVLKVN 61 Query: 87 FDWIYDGEVIDRRYEDVTNKK 107 W+ G+ +K Sbjct: 62 EGWLLYGDTFKNDKIKDCGEK 82 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +D + R+K+ RK G+ Q + KL+ + + +S++E+ T P + K+ V Sbjct: 1 MKIMDKLS--NRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTNPSGELLLKLANVL 58 Query: 166 KKHLDWIYFGDEVIVPK 182 K + W+ +GD K Sbjct: 59 KVNEGWLLYGDTFKNDK 75 >gi|296118143|ref|ZP_06836724.1| putative Helix-turn-helix domain protein [Corynebacterium ammoniagenes DSM 20306] gi|295968701|gb|EFG81945.1| putative Helix-turn-helix domain protein [Corynebacterium ammoniagenes DSM 20306] Length = 192 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 2/93 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R A N + +A S ++ E G S+ + + S D + + Sbjct: 12 QRIRGLRLARNWSLDTLARRCEISTSTLSRIETGRQRISLDLLVTIAQALGTSLDQLVEP 71 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 E D + L R +G Sbjct: 72 EGNDDVVIRPEPESL--GGVTFWLLSRERDRRG 102 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ +R + S + + STLS E GR + I Q LD + Sbjct: 11 RQRIRGLRLARNWSLDTLARRCEISTSTLSRIETGRQRISLDLLVTIAQALGTSLDQLVE 70 Query: 175 GD 176 + Sbjct: 71 PE 72 >gi|291545572|emb|CBL18680.1| Helix-turn-helix [Ruminococcus sp. SR1/5] Length = 97 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RIK R+A N TQ+E+A N + V++ E G+ T + + + N ++S D Sbjct: 4 KAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADT 63 Query: 90 IY 91 + Sbjct: 64 LL 65 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A+G R+KS R+ K ++Q E L+ + + +S E+G + ++ I Sbjct: 1 MDLKAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 D + + + K K++K Sbjct: 61 ADTLLIDVVAHSVTGVTNELTEKIEKLPIKEQKK 94 >gi|257888763|ref|ZP_05668416.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257824817|gb|EEV51749.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 72 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 32/69 (46%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI+D+R+ + Q+++A N ++ + +E+G + + L + Y S D++ + Sbjct: 4 RIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLDIPTQSLIKLADFYSTSIDYLLNLT 63 Query: 95 VIDRRYEDV 103 Y Sbjct: 64 DQKEPYPRN 72 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+DK ++Q + KLL + +T S YE G+ + K+ +D++ Sbjct: 1 MYYRIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLDIPTQSLIKLADFYSTSIDYLL 60 Query: 174 FGDEVIVP 181 + P Sbjct: 61 NLTDQKEP 68 >gi|226363378|ref|YP_002781160.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226241867|dbj|BAH52215.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 206 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P++ VG R+K +R+ T +++ S ++ E G ++ L L Sbjct: 8 PDLDGVLDAVGPRLKALRQQRGATLAQLSESTGISVSTLSRLEAGQRKPTLELMLLLARA 67 Query: 83 YEISFDWIYD 92 +++ D + D Sbjct: 68 HQLPLDELVD 77 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RLK++R+ +G + + + G+ STLS E G+ P ++ + + + LD + Sbjct: 16 AVGPRLKALRQQRGATLAQLSESTGISVSTLSRLEAGQRKPTLELMLLLARAHQLPLDEL 75 Query: 173 Y 173 Sbjct: 76 V 76 >gi|167768231|ref|ZP_02440284.1| hypothetical protein CLOSS21_02787 [Clostridium sp. SS2/1] gi|317497813|ref|ZP_07956125.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709755|gb|EDS20334.1| hypothetical protein CLOSS21_02787 [Clostridium sp. SS2/1] gi|291560246|emb|CBL39046.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|316894926|gb|EFV17096.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 115 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 36/89 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G RIK RK + TQ+ +A A + + E G + SI L ++S D+ Sbjct: 6 KELGKRIKLTRKGQDLTQEMLAEKAGVSQHYIYEIEAGRKAMSIHSFASLTTALDVSADY 65 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + G+ D I A L Sbjct: 66 LLFGDGQRIFDVDTPAHHNNQLMEIAAEL 94 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++D +G R+K RK + ++Q + G+ + E GR I + Sbjct: 1 MKIDLKELGKRIKLTRKGQDLTQEMLAEKAGVSQHYIYEIEAGRKAMSIHSFASLTTALD 60 Query: 167 KHLDWIYFGD 176 D++ FGD Sbjct: 61 VSADYLLFGD 70 >gi|166032287|ref|ZP_02235116.1| hypothetical protein DORFOR_01990 [Dorea formicigenerans ATCC 27755] gi|166028010|gb|EDR46767.1| hypothetical protein DORFOR_01990 [Dorea formicigenerans ATCC 27755] Length = 351 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK+ RK TQ+++A + AVN +E G I + +I + + Sbjct: 2 QIGEKIKNYRKTAGLTQEQVADYLDVSTPAVNKWEKGNTYPDISLLPAIARLLKIDMNEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + E L ++ + +K+ K Sbjct: 62 FSFREELTEKEIGQFVNELSEVSLDSFIKAFEMGKN 97 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 37/73 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K+ RK G++Q + L + ++ +E+G T P+I I ++ K ++ Sbjct: 1 MQIGEKIKNYRKTAGLTQEQVADYLDVSTPAVNKWEKGNTYPDISLLPAIARLLKIDMNE 60 Query: 172 IYFGDEVIVPKSI 184 ++ E + K I Sbjct: 61 LFSFREELTEKEI 73 >gi|114798978|ref|YP_761236.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739152|gb|ABI77277.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 69 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + G R++ +R+ +Q+E A A + V+ E G+ + ++ L +I Sbjct: 2 DIRQKFGKRLRQLREERGWSQEEFADRAGLHRTYVSAVERGVRNPTLSVLERLAKALDIK 61 Query: 87 FDWIYD 92 + Sbjct: 62 LSELVQ 67 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G RL+ +R+++G SQ EF G+ + +S E+G P + ++ + L + Sbjct: 7 FGKRLRQLREERGWSQEEFADRAGLHRTYVSAVERGVRNPTLSVLERLAKALDIKLSELV 66 >gi|75763251|ref|ZP_00743006.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896766|ref|YP_002445177.1| DNA-binding protein [Bacillus cereus G9842] gi|228900413|ref|ZP_04064641.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228938947|ref|ZP_04101547.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952211|ref|ZP_04114302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958114|ref|ZP_04119849.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228969645|ref|ZP_04130433.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228971829|ref|ZP_04132450.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978437|ref|ZP_04138814.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|229069382|ref|ZP_04202672.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|229079014|ref|ZP_04211566.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|229109288|ref|ZP_04238887.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|229144444|ref|ZP_04272849.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|229178237|ref|ZP_04305608.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|296502428|ref|YP_003664128.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|74489263|gb|EAO52724.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543988|gb|ACK96382.1| DNA-binding protein [Bacillus cereus G9842] gi|228605367|gb|EEK62817.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|228639075|gb|EEK95500.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228674298|gb|EEL29543.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|228704428|gb|EEL56862.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228713869|gb|EEL65754.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228781454|gb|EEM29655.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228787919|gb|EEM35877.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228790054|gb|EEM37848.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228801631|gb|EEM48513.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807482|gb|EEM54010.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820796|gb|EEM66821.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859211|gb|EEN03643.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|296323480|gb|ADH06408.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|326939449|gb|AEA15345.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 181 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|296877340|ref|ZP_06901380.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431860|gb|EFH17667.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 113 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K++RK + TQ E+A +S+ +E G + + + L +S D++ Sbjct: 3 FAERLKELRKQAHLTQVELAKQLGIGQSSYADWERGKKNPTQENLIRLAQILNVSVDYLV 62 Query: 92 DGEVIDRRYEDVTN 105 D Sbjct: 63 GNSEAKSEELDNIE 76 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RLK +RK ++Q+E K LG+ S+ +++E+G+ P + ++ Q+ +D+ Sbjct: 1 MAFAERLKELRKQAHLTQVELAKQLGIGQSSYADWERGKKNPTQENLIRLAQILNVSVDY 60 Query: 172 IYFGDEVIVPK 182 + E + Sbjct: 61 LVGNSEAKSEE 71 >gi|218134569|ref|ZP_03463373.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC 43243] gi|217989954|gb|EEC55965.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC 43243] Length = 268 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I +R +Q E+A AV+ +ENG + L E+ +S + + Sbjct: 14 ILQLRTERGMSQDELAEKIMVTRQAVSRWENGETIPNTETLKLLSKEFNVSINTLL 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +R ++GMSQ E + + + +S +E G TIP + + + + ++ Sbjct: 8 METKNIILQLRTERGMSQDELAEKIMVTRQAVSRWENGETIPNTETLKLLSKEFNVSINT 67 Query: 172 IY 173 + Sbjct: 68 LL 69 >gi|238023271|ref|ZP_04603697.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147] gi|237865391|gb|EEP66531.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147] Length = 214 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 5/117 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RIK RK + TQ ++A +A++ +E + + L ++ F W+ Sbjct: 6 IGQRIKQKRKELHLTQADLAKKVQGVSHAAISQWETDITKPNAENLYDLSQIFKCDFVWL 65 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI---RKDKGMSQIEFGKLLGMPNSTLS 144 GE + + N ++ P LK+ R + ++ Sbjct: 66 LRGEGENITPHKIENVTKI-PVFRYDDLKNWDSTRIINHTETEYIMSEINHSEFAVA 121 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + IG R+K RK+ ++Q + K + G+ ++ +S +E T P + + Q+ K Sbjct: 1 MQATTIGQRIKQKRKELHLTQADLAKKVQGVSHAAISQWETDITKPNAENLYDLSQIFKC 60 Query: 168 HLDWIYFGD-EVIVPKSIKR 186 W+ G+ E I P I+ Sbjct: 61 DFVWLLRGEGENITPHKIEN 80 >gi|310642245|ref|YP_003947003.1| merr family transcriptional regulator [Paenibacillus polymyxa SC2] gi|309247195|gb|ADO56762.1| MerR family transcriptional regulator [Paenibacillus polymyxa SC2] Length = 179 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ RK N + +++ + ++ EN S SI + N + ++ Sbjct: 3 IGCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALNVPLAFLL 62 Query: 92 DGEVIDRRYEDVTNKKR 108 E + +++ Sbjct: 63 LKEEERMQVIRKDERRK 79 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ RK K +S + + G+ +S E +T P I I L + Sbjct: 1 MGIGCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALNVPLAF 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + +E + K + K+K Sbjct: 61 LLLKEEERMQVIRKDERRKTLYGKNK 86 >gi|313124538|ref|YP_004034797.1| transcriptional regulator (xre family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281101|gb|ADQ61820.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 122 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 38/78 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++D+R+ +Q+E+A+ + ++ +E G ++ + N + +S + + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVSRNSVL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 G ++ ++ +R+ Sbjct: 66 AGLPVEMLVQEGQEDRRV 83 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG L+ +R+ +GMSQ E LG+ T+SN+E GR +P +K KI + Sbjct: 1 MEKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVS 60 Query: 169 LDWIYFG 175 + + G Sbjct: 61 RNSVLAG 67 >gi|240143885|ref|ZP_04742486.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|257204077|gb|EEV02362.1| DNA-binding protein [Roseburia intestinalis L1-82] Length = 298 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G+ I + RK TQK++A + + +V+ +E G+C + L L IS + Sbjct: 5 KIGSYIAEKRKKLGMTQKQLAEKLGKSDKSVSKWERGICLPDVSVYLELCEILGISLNEF 64 Query: 91 YDGEVIDRRYEDVTNKKRL-----DPYAIGARLKSI 121 GE I+ + ++ L D LK I Sbjct: 65 LAGEDIEVTNVEKKSEDTLIQISKDSSHKQRYLKKI 100 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 43/80 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG+ + RK GM+Q + + LG + ++S +E+G +P++ ++ ++ Sbjct: 1 MDLVKIGSYIAEKRKKLGMTQKQLAEKLGKSDKSVSKWERGICLPDVSVYLELCEILGIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAK 188 L+ G+++ V K+++ Sbjct: 61 LNEFLAGEDIEVTNVEKKSE 80 >gi|225017527|ref|ZP_03706719.1| hypothetical protein CLOSTMETH_01454 [Clostridium methylpentosum DSM 5476] gi|224949677|gb|EEG30886.1| hypothetical protein CLOSTMETH_01454 [Clostridium methylpentosum DSM 5476] Length = 83 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ ++ TQ E+A + A + +E G+ S Y S D++ Sbjct: 4 NRIRDLREDHDLTQAELARMLSVSRQAYSGYERGVRSIPFEILCQFALFYGTSLDYLTGR 63 Query: 94 EVIDRRYEDVTNKKRL 109 + Y K + Sbjct: 64 TDVKAPYPKPKQKNFV 79 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 32/82 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R+D ++Q E ++L + S YE+G + + LD++ Sbjct: 1 MNINRIRDLREDHDLTQAELARMLSVSRQAYSGYERGVRSIPFEILCQFALFYGTSLDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSK 194 +V P + K K Sbjct: 61 TGRTDVKAPYPKPKQKNFVVRK 82 >gi|171915361|ref|ZP_02930831.1| phage repressor [Verrucomicrobium spinosum DSM 4136] Length = 283 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 19/141 (13%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 +R TQ E+A + V++ E G S L + + + + D Sbjct: 2 HLRHKLRLTQAELAERLGVSRNYVSMME-GGRPPSRSLVLLIED---------LEEQAKD 51 Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 R + + + R+ KG S + K G L E+G + Sbjct: 52 GRKSTGDARATM---------RKAREAKGWSIKDLAKATGYSIGVLQALEEGNGRGSERQ 102 Query: 158 ARKIKQVTKKHLDWIYFGDEV 178 +K+ + + G E Sbjct: 103 IKKVATALDVPFEDLMQGVEP 123 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 12/138 (8%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG-- 93 ++ R+A + K++A + E G S R + ++ F+ + G Sbjct: 63 MRKAREAKGWSIKDLAKATGYSIGVLQALEEGNGRGSERQIKKVATALDVPFEDLMQGVE 122 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 +G +K+ R +S + GK+ ++E Sbjct: 123 PGFIDESGLTGTLGASPNVELGPGIKTARYVPLISFAQAGKM--------GSWEDAAYEY 174 Query: 154 EIKPARKIK--QVTKKHL 169 A + + + Sbjct: 175 TGHIAFDMTDPKAFGVTI 192 >gi|311747894|ref|ZP_07721679.1| transcriptional regulator [Algoriphagus sp. PR1] gi|126575888|gb|EAZ80198.1| transcriptional regulator [Algoriphagus sp. PR1] Length = 231 Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 IK +RK N TQ+ MA S + +E+ + + + L + +S D + + Sbjct: 6 NIKFLRKQKNLTQEIMASTIGISRSKLAGYES-SVNPPLDTLVKLSDALGVSLDILLRED 64 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + D + G +L+ + Sbjct: 65 LTSYSEYKLRELLETDQFLRGRKLRIL 91 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K +RK K ++Q +G+ S L+ YE P + K+ LD Sbjct: 1 MTLNTNIKFLRKQKNLTQEIMASTIGISRSKLAGYESS-VNPPLDTLVKLSDALGVSLDI 59 Query: 172 IYFGD 176 + D Sbjct: 60 LLRED 64 >gi|254447927|ref|ZP_05061391.1| helix-turn-helix domain protein [gamma proteobacterium HTCC5015] gi|198262353|gb|EDY86634.1| helix-turn-helix domain protein [gamma proteobacterium HTCC5015] Length = 363 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 42/123 (34%), Gaps = 3/123 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+ R T +E+A + A++ +E G + + + L + + ++ Sbjct: 2 LHERIRRARALKGMTLQEVADQIGGISKQAISKYEKGKDAPNSTRLIQLADVLGVKPEYF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + ++ D +K R + + + + L S S + Sbjct: 62 FRADSVELGEVDFRKHSAF-GKRQQEVVKE-RVREHLERYFAAERLFESESVHSFSQWYE 119 Query: 151 TIP 153 P Sbjct: 120 HFP 122 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ R KGM+ E +G + +S YE+G+ P ++ V ++ Sbjct: 1 MLHERIRRARALKGMTLQEVADQIGGISKQAISKYEKGKDAPNSTRLIQLADVLGVKPEY 60 Query: 172 IYFGDEVIV 180 + D V + Sbjct: 61 FFRADSVEL 69 >gi|95929111|ref|ZP_01311856.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95135012|gb|EAT16666.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 198 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 44/104 (42%), Gaps = 10/104 (9%) Query: 21 ITPEIRQYWKD--VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + IR+ K+ +G +++++R+ T +++A + ++ EN + L Sbjct: 1 MMENIREEVKELQIGMKVRNLRQERRMTLQDLANMTRLSKPLLSQIENNQVIPPLSTLLR 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + +E+S + ++ E N + + A ++ +R Sbjct: 61 IAKAFEVSLNCFFEDE--------RDNTQCVVVRAGEQHIRQLR 96 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 37/82 (45%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ + IG +++++R+++ M+ + + + LS E + IP + +I + Sbjct: 6 REEVKELQIGMKVRNLRQERRMTLQDLANMTRLSKPLLSQIENNQVIPPLSTLLRIAKAF 65 Query: 166 KKHLDWIYFGDEVIVPKSIKRA 187 + L+ + + + RA Sbjct: 66 EVSLNCFFEDERDNTQCVVVRA 87 >gi|331085708|ref|ZP_08334791.1| hypothetical protein HMPREF0987_01094 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406631|gb|EGG86136.1| hypothetical protein HMPREF0987_01094 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 129 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ R + +E+A AN ++ EN S+ + + N I+ D + Sbjct: 8 IGIRIKETRNQQGISAEELAELANLSSVYISYIENAKRKPSLESLIKICNALGITLDELL 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 G ++ E T+ L Sbjct: 68 YGNLLYNPTEYQTDIDLL 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ IG R+K R +G+S E +L + + +S E + P ++ KI Sbjct: 1 MPINYSLIGIRIKETRNQQGISAEELAELANLSSVYISYIENAKRKPSLESLIKICNALG 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 LD + +G+ + P + + SK +K+ Sbjct: 61 ITLDELLYGNLLYNPTEYQTDIDLLMADCSKNEKR 95 >gi|312868248|ref|ZP_07728448.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311095993|gb|EFQ54237.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 115 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 33/82 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K++RK TQ ++A + A +E G+ + + L +S D++ Sbjct: 2 EFSERLKNLRKEAGLTQVDVAEKLGISQPAYASWERGIKKPTQDNLVKLSKILYVSVDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPY 112 + + + + + L Sbjct: 62 LGNTENRQTSDVLEDIELLFRM 83 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 35/73 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK++RK+ G++Q++ + LG+ +++E+G P K+ ++ +D+ Sbjct: 1 MEFSERLKNLRKEAGLTQVDVAEKLGISQPAYASWERGIKKPTQDNLVKLSKILYVSVDY 60 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 61 LLGNTENRQTSDV 73 >gi|303327942|ref|ZP_07358381.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302861768|gb|EFL84703.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 156 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 3/97 (3%) Query: 6 FLETSLKSLQEYT---LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 F +S+++ + ++ R+ K VGT I++ RK TQ+ +A + +++ Sbjct: 21 FFTPPTESMRKKDTQEVQVSQATRKLAKLVGTNIQERRKKLGLTQECLAEKIGVGQQSLS 80 Query: 63 LFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 E G + + + S ++ D Sbjct: 81 RMERGDIAPKLERLPDVAATLRCSVADLFRASGADDH 117 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 27/57 (47%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ RK G++Q + +G+ +LS E+G P+++ + + + ++ Sbjct: 53 NIQERRKKLGLTQECLAEKIGVGQQSLSRMERGDIAPKLERLPDVAATLRCSVADLF 109 >gi|259418447|ref|ZP_05742365.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259345842|gb|EEW57686.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 133 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 2/105 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R++ TQ ++A ++ + +E + L +S W+ Sbjct: 16 FGDRVAAARESAGMTQGQLARRMGVKKTTLIGWEQDLSEPRANKLSMLSGLLNVSMSWLL 75 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 GE D D AI L+S+R+D Q E L Sbjct: 76 TGEGDDLSAPSEDTLGE-DMAAIARELRSLREDLR-QQAERAGRL 118 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 38/89 (42%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G R+ + R+ GM+Q + + +G+ +TL +EQ + P + + + Sbjct: 12 DAATFGDRVAAARESAGMTQGQLARRMGVKKTTLIGWEQDLSEPRANKLSMLSGLLNVSM 71 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 W+ G+ + + G + +++ Sbjct: 72 SWLLTGEGDDLSAPSEDTLGEDMAAIARE 100 >gi|302531671|ref|ZP_07284013.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] gi|302440566|gb|EFL12382.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] Length = 193 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 29/86 (33%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P + + + R++ R + E++ S ++ E+G S+ L + Sbjct: 5 PAVDSVLEQIAPRLRRARDHRGVSLAELSRSTGISTSTLSRLESGQRKPSLELLLPITAA 64 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKR 108 I FD I I KR Sbjct: 65 LGIPFDEIVAAPRIVDPRVPQQAAKR 90 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ R +G+S E + G+ STLS E G+ P ++ I D I Sbjct: 18 LRRARDHRGVSLAELSRSTGISTSTLSRLESGQRKPSLELLLPITAALGIPFDEIVAAPR 77 Query: 178 VIVPKSIKRA 187 ++ P+ ++A Sbjct: 78 IVDPRVPQQA 87 >gi|199597505|ref|ZP_03210934.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|199591528|gb|EDY99605.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] Length = 176 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ +RK + +Q E+A A++ +EN + ++ +S+ + Sbjct: 2 FGERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADLL 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 E + + + Sbjct: 62 GNEPPEPKPAANRPSSAI 79 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL +RK G+SQ E + +G+ +S YE P+++ ++ + + Sbjct: 1 MFGERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADL 60 Query: 173 YFGDEVIVPK 182 G+E PK Sbjct: 61 L-GNEPPEPK 69 >gi|169334606|ref|ZP_02861799.1| hypothetical protein ANASTE_01009 [Anaerofustis stercorihominis DSM 17244] gi|169259323|gb|EDS73289.1| hypothetical protein ANASTE_01009 [Anaerofustis stercorihominis DSM 17244] Length = 102 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDR 98 IRK +Q+E A N ++ +E G S SI ++ + Y+IS D + D ++ + Sbjct: 2 IRKKEGYSQEEAAEKLNVTRQTISNWETGQTSPSIEQSISIAKLYKISLDELTDNDIRNV 61 Query: 99 RYEDVTNKKRLDPYAIGARLKSI 121 V+N +++ Y + +K I Sbjct: 62 IENKVSNTEKIAGYMML-YIKFI 83 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IRK +G SQ E + L + T+SN+E G+T P I+ + I ++ K LD + Sbjct: 2 IRKKEGYSQEEAAEKLNVTRQTISNWETGQTSPSIEQSISIAKLYKISLDEL 53 >gi|118617359|ref|YP_905691.1| transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118569469|gb|ABL04220.1| transcriptional regulator [Mycobacterium ulcerans Agy99] Length = 180 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R+ T +++A A +S ++ E G + SI AL + ++ ++ E Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDES 64 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 RL P + + Sbjct: 65 AHETITADRAHDRLGPQSGRYHV 87 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 37/74 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + A L+++R+ +G++ + + G+ S LS E+G++ P I A K+ + + ++ Sbjct: 1 MTALLRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60 Query: 174 FGDEVIVPKSIKRA 187 + + RA Sbjct: 61 SDESAHETITADRA 74 >gi|325519127|gb|EGC98605.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 203 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +S S + VG +I+ +R T +++ A +S ++ E Sbjct: 1 MASSSGSRRTPAGAAPQPPAATPPRVGEQIQRLRNERRLTLDDLSRAAGVSKSMLSEIER 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIY 91 + +I A L N I+ D ++ Sbjct: 61 DKANPTIAVAWRLTNALGITLDELF 85 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ ++ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 28 EQIQRLRNERRLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|310822072|ref|YP_003954430.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|309395144|gb|ADO72603.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] Length = 119 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 6/112 (5%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G+ ++ R TQ E+A + E G S+ L + + I Sbjct: 3 EELANQIGSAAREARTHLGLTQAEVAGKLGIAHMVYSRLERGKMLPSVPTLLRMCSVLHI 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 S D + + + L +R+ G+++ L Sbjct: 63 SADELLG------NSGTQEVSRPAHGSRGQSELPQVRQLLGLARKMDEDKLH 108 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R G++Q E LG+ + S E+G+ +P + ++ V D + Sbjct: 14 REARTHLGLTQAEVAGKLGIAHMVYSRLERGKMLPSVPTLLRMCSVLHISADELL 68 >gi|291542133|emb|CBL15243.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 108 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K++R N+ +Q E+A N SA++ +E G+ SI L + ++ D++ Sbjct: 2 EFSVRLKELRVDNDMSQTELAEKLNLKASAISKYEKGITQPSIDTLKNLAEIFSVTVDYL 61 Query: 91 YD-GEVIDRRYEDVTNKKRLDPYAIGARL 118 ++ + D +L Sbjct: 62 IGMSDIKNPYSNSQITPNEADLIEHFRQL 90 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 38/80 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R D MSQ E + L + S +S YE+G T P I + + ++ +D+ Sbjct: 1 MEFSVRLKELRVDNDMSQTELAEKLNLKASAISKYEKGITQPSIDTLKNLAEIFSVTVDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + ++ P S + N+ Sbjct: 61 LIGMSDIKNPYSNSQITPNE 80 >gi|189423256|ref|YP_001950433.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189419515|gb|ACD93913.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 160 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 27/167 (16%) Query: 6 FLETSLKSLQEYTLIITPEIR------QYWKDVGTRIKDIRKANNKTQKEMAIGANQLES 59 FL S +++ I E + ++ VG I+ R Q+E+A ES Sbjct: 4 FLYYSDSRRHLFSIQIPLEKQPVPGYPEFPITVGEHIRKKRMDLGLLQREVAEIIGVTES 63 Query: 60 AVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 ++ +E+G ++Y + + D A K Sbjct: 64 SIWNWEHG-TEPELQYNPRIIKFLG-----------------YIPFDCPDDTVGRLAWYK 105 Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 GM+ G+ +G LS++ GR P +K KI+Q K Sbjct: 106 RAM---GMNLDHLGEAMGRDPEQLSDWLSGRHNPFLKNREKIEQYLK 149 >gi|241207203|ref|YP_002978299.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861093|gb|ACS58760.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 188 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + PE+ Q +G RI+ +R+ T ++A + + ++ E S + + Sbjct: 1 MEPELEQ---AIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARIC 57 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKK 107 +S + + ++ Sbjct: 58 AALGLSLSAFFAEDGQASPLARRQEQQ 84 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 40/93 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R++++R++K ++ + G+ + +S E+ P +I L Sbjct: 8 AIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARICAALGLSLSAF 67 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + D P + ++ + ++ ++S +P Sbjct: 68 FAEDGQASPLARRQEQQVWRDPETGYMRRSVSP 100 >gi|325262607|ref|ZP_08129344.1| DNA-binding protein [Clostridium sp. D5] gi|324032439|gb|EGB93717.1| DNA-binding protein [Clostridium sp. D5] Length = 365 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I+ RK TQ+E+A AVN +E G+ I L + +S D + Sbjct: 2 KIHEMIRCKRKEMGLTQEELARYLGVSAPAVNKWEKGLSYPDITLLPVLAAYFNLSVDDL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E + + +RL Sbjct: 62 IGYEPQMVKEDIKKLYRRL 80 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ RK+ G++Q E + LG+ ++ +E+G + P+I + +D Sbjct: 1 MKIHEMIRCKRKEMGLTQEELARYLGVSAPAVNKWEKGLSYPDITLLPVLAAYFNLSVDD 60 Query: 172 IYFGDEVIVPKSIKR 186 + + +V + IK+ Sbjct: 61 LIGYEPQMVKEDIKK 75 >gi|315612472|ref|ZP_07887385.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315453|gb|EFU63492.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 71 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K RIK++RK + +Q+ +A + ++ +E G S+ A + + ++ D Sbjct: 2 RKQTQNRIKELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTID 61 Query: 89 WIYDGEVI 96 ++ E Sbjct: 62 YLLGSESD 69 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K +RK +SQ +G+ +T+SN+E G + ++ A+K+ + +D++ Sbjct: 5 TQNRIKELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLL 64 Query: 174 FGD 176 + Sbjct: 65 GSE 67 >gi|300173352|ref|YP_003772518.1| helix-turn-helix domain-containing protein [Leuconostoc gasicomitatum LMG 18811] gi|299887731|emb|CBL91699.1| helix-turn-helix domain protein [Leuconostoc gasicomitatum LMG 18811] Length = 184 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG +K +R N T +A + + ++ E G S SI + + I ++ Sbjct: 4 KRVGENLKKVRIEKNMTLDNVAEMTDVSKPTLHNIETGKTSPSIDNLWKISSGLGIPINY 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + ID ++ + IG +++ Sbjct: 64 FFSKAGIDFELVKQSDLHPIATENIGVTIQA 94 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G LK +R +K M+ ++ + TL N E G+T P I KI Sbjct: 1 MIGKRVGENLKKVRIEKNMTLDNVAEMTDVSKPTLHNIETGKTSPSIDNLWKISSGLGIP 60 Query: 169 LDWIY 173 +++ + Sbjct: 61 INYFF 65 >gi|225570465|ref|ZP_03779490.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM 15053] gi|225160662|gb|EEG73281.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM 15053] Length = 194 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 +T+I++ R+ D+G ++K++R A + TQ+E+A A + ++ E + S SI Sbjct: 5 TFTIIVS---RRTVMDIGKKLKELRIAKDLTQEELADRAELSKGFISQLERDLTSPSIAT 61 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 + L + + + + ++ + Sbjct: 62 LVDLLQVLGTTINEFFSEDPEEQIVFHDEDY 92 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK +R K ++Q E + +S E+ T P I + QV ++ Sbjct: 16 MDIGKKLKELRIAKDLTQEELADRAELSKGFISQLERDLTSPSIATLVDLLQVLGTTINE 75 Query: 172 IYFGD 176 + D Sbjct: 76 FFSED 80 >gi|460026|gb|AAC98432.1| repressor protein [Streptococcus pneumoniae] gi|183217361|gb|ACC59280.1| putative transcriptional regulator [Streptococcus pneumoniae] gi|218473421|emb|CAV31131.1| hypothetical protein [Streptococcus pneumoniae] Length = 75 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 34 TRIKDIRKANNKTQKEMAIG-ANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+D+R+ ++ TQ+ +A N SA + E+G SI + L + Y +S D++ Sbjct: 3 KRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYLVG 62 Query: 93 GEVIDRRYEDVT 104 + Sbjct: 63 RVDNKEDHYSKK 74 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGK-LLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R++ +R+D ++Q K +L S S E G + I K+ LD++ Sbjct: 1 MLKRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYL 60 Query: 173 YFGDEVIVPKSIKR 186 + K+ Sbjct: 61 VGRVDNKEDHYSKK 74 >gi|70726855|ref|YP_253769.1| hypothetical protein SH1854 [Staphylococcus haemolyticus JCSC1435] gi|68447579|dbj|BAE05163.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 179 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +++++R+ N TQ+E+A + + ++ E+ S S+ L + S Sbjct: 2 QIGNKLRNLRRQKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSPSDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ + D Y G L + Sbjct: 62 FKEKSKEKVLYTKNERTIYDEYDRGYVLNWL 92 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R+ K ++Q E + + +S E P ++ I +V Sbjct: 1 MQIGNKLRNLRRQKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSPSD 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + K + Sbjct: 61 FFKEKSKEKVLYTKNER 77 >gi|315651060|ref|ZP_07904094.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486650|gb|EFU76998.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 166 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 36/106 (33%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G IK IRK+ TQKE+A + + +E + + + ++S Sbjct: 3 KSMGENIKRIRKSKGLTQKEVAKKLGISQQSFAQYERIDAIPKFKTLQNIADALDVSVGD 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 I D+ + K L + M ++ + Sbjct: 63 IIYDGPKDKSRYLIEFTKYLYDHGFKYEYGDESLAAFMGIGDYAEK 108 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++G +K IRK KG++Q E K LG+ + + YE+ IP+ K + I + I Sbjct: 4 SMGENIKRIRKSKGLTQKEVAKKLGISQQSFAQYERIDAIPKFKTLQNIADALDVSVGDI 63 Query: 173 YFG 175 + Sbjct: 64 IYD 66 >gi|328910532|gb|AEB62128.1| yqaE hypothetical protein [Bacillus amyloliquefaciens LL3] Length = 126 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 29/65 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +++ +RK +QK + ES ++++E + + +++S D++ Sbjct: 3 FGDQLRQLRKQRKLSQKSLGQKFGLAESTISMYERNEREPDYATLVKFADFFDVSTDFLL 62 Query: 92 DGEVI 96 GE Sbjct: 63 RGEDY 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L+ +RK + +SQ G+ G+ ST+S YE+ P+ K D+ Sbjct: 1 MRFGDQLRQLRKQRKLSQKSLGQKFGLAESTISMYERNEREPDYATLVKFADFFDVSTDF 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + G++ K+ + K N Sbjct: 61 LLRGEDYYRDKARELRKQNDV 81 >gi|317127194|ref|YP_004093476.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472142|gb|ADU28745.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 35/75 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+ I + RK+ N +Q+ +A AV+ +EN + S + + + +E + Sbjct: 3 LGSNINNKRKSLNLSQEYVADQLGVSRQAVSKWENNLSKPSTQNLIKMATLFECDIKELV 62 Query: 92 DGEVIDRRYEDVTNK 106 + + +++ N+ Sbjct: 63 SSDKFMEKQKNLENQ 77 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G+ + + RK +SQ LG+ +S +E + P + K+ + + + Sbjct: 1 MSLGSNINNKRKSLNLSQEYVADQLGVSRQAVSKWENNLSKPSTQNLIKMATLFECDIKE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + D K +++ K ++ +SKKD + Sbjct: 61 LVSSD-----KFMEKQKNLENQTESKKDIR 85 >gi|226312433|ref|YP_002772327.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226095381|dbj|BAH43823.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 185 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 31/85 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++ ++G IK IRK N + + + ++ + E G + +I + + Sbjct: 1 MEEFHTNIGENIKRIRKERNLSLDKTSEITGVSKTMLGQIERGKSAPTITTLWKIASGLR 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + + Sbjct: 61 LSFSSLISQYKPNVTIVKKKEVNPI 85 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +K IRK++ +S + ++ G+ + L E+G++ P I KI + Sbjct: 5 HTNIGENIKRIRKERNLSLDKTSEITGVSKTMLGQIERGKSAPTITTLWKIASGLRLSFS 64 Query: 171 WIY 173 + Sbjct: 65 SLI 67 >gi|209967957|ref|YP_002265383.1| putative peptidase, S24-like [Aliivibrio salmonicida LFI1238] gi|208011481|emb|CAQ81944.1| putative peptidase, S24-like [Aliivibrio salmonicida LFI1238] Length = 205 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G RIK +R +Q+ +A N +S ++ +E G + L + ++ +++ Sbjct: 1 MTTIGERIKSLRLNQGLSQESLAEKINVTKSTISQWEVGKAQPKNKNLLSIVTFFDTTYE 60 Query: 89 WIYDGEVIDRR 99 ++ G ID R Sbjct: 61 YLKGGGEIDDR 71 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+KS+R ++G+SQ + + + ST+S +E G+ P+ K I + Sbjct: 1 MTTIGERIKSLRLNQGLSQESLAEKINVTKSTISQWEVGKAQPKNKNLLSIVTFFDTTYE 60 Query: 171 WIYFGDEV 178 ++ G E+ Sbjct: 61 YLKGGGEI 68 >gi|153816198|ref|ZP_01968866.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC 27756] gi|317500518|ref|ZP_07958741.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089382|ref|ZP_08338281.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846533|gb|EDK23451.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC 27756] gi|316898107|gb|EFV20155.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium 8_1_57FAA] gi|330404750|gb|EGG84288.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium 3_1_46FAA] Length = 95 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ VG I+ +R N Q ++A N +++ +E G+ I + + + + Sbjct: 23 MKKEENAVGENIRRLRMRNQLKQADLAQKLNISRQSLSAYERGITLPDIYLLIEIADFFR 82 Query: 85 ISFDWI 90 IS D + Sbjct: 83 ISLDEL 88 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G ++ +R + Q + + L + +LS YE+G T+P+I +I + LD Sbjct: 28 NAVGENIRRLRMRNQLKQADLAQKLNISRQSLSAYERGITLPDIYLLIEIADFFRISLDE 87 Query: 172 I 172 + Sbjct: 88 L 88 >gi|300117591|ref|ZP_07055374.1| DNA-binding protein [Bacillus cereus SJ1] gi|298725026|gb|EFI65685.1| DNA-binding protein [Bacillus cereus SJ1] Length = 181 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKRADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKRADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|295107974|emb|CBL21927.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 71 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 30/66 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R ++ +Q+++ + + + + +E G I + L + Y+ + D++ Sbjct: 4 QRIQDLRVDSDLSQRQLGEILHISQRSYSHYETGSRGIPIEMLIRLADYYDTTIDYLVGR 63 Query: 94 EVIDRR 99 Sbjct: 64 TDNKAP 69 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R D +SQ + G++L + + S+YE G I+ ++ +D++ Sbjct: 1 MKFQRIQDLRVDSDLSQRQLGEILHISQRSYSHYETGSRGIPIEMLIRLADYYDTTIDYL 60 Query: 173 YFGDEVIVP 181 + P Sbjct: 61 VGRTDNKAP 69 >gi|160941440|ref|ZP_02088776.1| hypothetical protein CLOBOL_06332 [Clostridium bolteae ATCC BAA-613] gi|158435650|gb|EDP13417.1| hypothetical protein CLOBOL_06332 [Clostridium bolteae ATCC BAA-613] Length = 193 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ +RK+ + TQKE A +S ++ ENG + + + E+ +S W+ Sbjct: 11 NISDRIRVLRKSEHLTQKEFAKRLLISQSYLSGLENGNEIPTNKLLKLICLEFGVSESWL 70 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +K L + GA LK Sbjct: 71 LNDNGEMYTEVYENDKASLTEVSNGALLK 99 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I R++ +RK + ++Q EF K L + S LS E G IP K + I Sbjct: 9 MNNISDRIRVLRKSEHLTQKEFAKRLLISQSYLSGLENGNEIPTNKLLKLICLEFGVSES 68 Query: 171 WIYFGDEVIVPKSIKRAKGNQSS 193 W+ + + + + K + + Sbjct: 69 WLLNDNGEMYTEVYENDKASLTE 91 >gi|94984444|ref|YP_603808.1| XRE family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554725|gb|ABF44639.1| transcriptional regulator, XRE family [Deinococcus geothermalis DSM 11300] Length = 140 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + R++++R K++A A ++ E G + S+ L Y Sbjct: 7 AEEVKMKLHERLRELRSERGLRLKDVAETAGISVPYLSDLERGRTNPSLETLQTLAGAYS 66 Query: 85 ISFDWIYDG 93 I+ + +G Sbjct: 67 ITVHDLLEG 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL+ +R ++G+ + + G+ LS+ E+GRT P ++ + + + Sbjct: 12 MKLHERLRELRSERGLRLKDVAETAGISVPYLSDLERGRTNPSLETLQTLAGAYSITVHD 71 Query: 172 IYFGDE 177 + G E Sbjct: 72 LLEGVE 77 >gi|296170806|ref|ZP_06852377.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894542|gb|EFG74280.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 177 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + A L+++R +G++ + G+ S LS E+ ++ P I A K+ + + ++ Sbjct: 1 MTALLRAVRTQRGLTLEALAERTGLTKSYLSKIERRQSTPSIAVALKVAKALDVDVGQLF 60 Query: 174 FGDEVIVPKSIKRA 187 +E ++ RA Sbjct: 61 SDEEAREKIAVDRA 74 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 26/75 (34%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R T + +A +S ++ E + SI AL + ++ ++ E Sbjct: 5 LRAVRTQRGLTLEALAERTGLTKSYLSKIERRQSTPSIAVALKVAKALDVDVGQLFSDEE 64 Query: 96 IDRRYEDVTNKKRLD 110 + D Sbjct: 65 AREKIAVDRAPAGAD 79 >gi|254513121|ref|ZP_05125187.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221533120|gb|EEE36115.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 193 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + ++G ++ +R+ + T E+A A ++ ENG S S+ L Sbjct: 1 MQDKKTETELEIGRTLQRLRQERSLTVTELAARAKVSTPMISRIENGHVSPSLGTLQALA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + +S ++ V + L Sbjct: 61 DALSVSMMALFSHTANAADVHHVQSGNGL 89 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 28/71 (39%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + +KK IG L+ +R+++ ++ E + +S E G P + + + Sbjct: 1 MQDKKTETELEIGRTLQRLRQERSLTVTELAARAKVSTPMISRIENGHVSPSLGTLQALA 60 Query: 163 QVTKKHLDWIY 173 + ++ Sbjct: 61 DALSVSMMALF 71 >gi|251796510|ref|YP_003011241.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247544136|gb|ACT01155.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 108 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 34/70 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K++R+ + +Q+ +A SA + +E + L + +E++ D+I Sbjct: 5 MGDRLKELRRERSLSQEIVAQSIGITRSAYSHYEINNRQPVYETLIKLASFFEVTTDFII 64 Query: 92 DGEVIDRRYE 101 DG+ + Sbjct: 65 DGDTRSTEPQ 74 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G RLK +R+++ +SQ + +G+ S S+YE P + K+ + D+I Sbjct: 5 MGDRLKELRRERSLSQEIVAQSIGITRSAYSHYEINNRQPVYETLIKLASFFEVTTDFII 64 Query: 174 FGDEVIVPKSI 184 GD + Sbjct: 65 DGDTRSTEPQV 75 >gi|223932164|ref|ZP_03624168.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223899145|gb|EEF65502.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 74 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+DIR+ ++ TQ+ ++ + SA E G + S + L N Y +S D++ Sbjct: 3 RRIRDIREDHDLTQQNVSDYLSITRSAYAKIERGEHTLSAEVLIQLSNLYNVSTDYLLGQ 62 Query: 94 EVIDRRYEDVTN 105 R ++ Sbjct: 63 TDFPHRIKNNLK 74 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ IR+D ++Q L + S + E+G + ++ + D++ Sbjct: 1 MYRRIRDIREDHDLTQQNVSDYLSITRSAYAKIERGEHTLSAEVLIQLSNLYNVSTDYLL 60 >gi|238916590|ref|YP_002930107.1| hypothetical protein EUBELI_00647 [Eubacterium eligens ATCC 27750] gi|238871950|gb|ACR71660.1| Hypothetical protein EUBELI_00647 [Eubacterium eligens ATCC 27750] Length = 294 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G +KS R KG +Q+E G LLG+ N +S +E+G + P+I ++ +V Sbjct: 1 MDKQKTGELIKSARIKKGYTQVELGDLLGVTNKAISRWEKGDSFPDISVIEELSRVLDIR 60 Query: 169 LDWIYFGD------EVIVPKSIKRAKGNQSSKKSK 197 + I GD E V + ++ K KK K Sbjct: 61 IQDIVIGDVTEPDSETAVTEVVRAVKLQDKVKKRK 95 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 24/70 (34%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G IK R TQ E+ A++ +E G I L +I I Sbjct: 7 GELIKSARIKKGYTQVELGDLLGVTNKAISRWEKGDSFPDISVIEELSRVLDIRIQDIVI 66 Query: 93 GEVIDRRYED 102 G+V + E Sbjct: 67 GDVTEPDSET 76 >gi|313625620|gb|EFR95300.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria innocua FSL J1-023] Length = 111 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K VG +IK R+ Q+ +A + ++ +ENG + L + Sbjct: 2 ELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKR 61 Query: 87 FDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSI 121 D + + E +D ++ I Sbjct: 62 LDDFFPERNLPPVDERSVTIAAHIDDDVTEEEMRDI 97 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K R+++G++Q + L T+S YE G ++ ++ K LD Sbjct: 4 NKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLD 63 Query: 171 WIY 173 + Sbjct: 64 DFF 66 >gi|169350485|ref|ZP_02867423.1| hypothetical protein CLOSPI_01253 [Clostridium spiroforme DSM 1552] gi|169292805|gb|EDS74938.1| hypothetical protein CLOSPI_01253 [Clostridium spiroforme DSM 1552] Length = 117 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 32/87 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK +Q+++ + ++ +E+ + + L ++IS D + Sbjct: 3 LGENILKLRKKQGLSQEQLGYQIDVTRQTISNWESEDTAPNPEQLKRLSKVFDISVDELL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D E + + ++ Sbjct: 63 DNEYKSKAILINKVSNTERLAGMIIKI 89 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 2/90 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G + +RK +G+SQ + G + + T+SN+E T P + +++ +V +D Sbjct: 1 MTLGENILKLRKKQGLSQEQLGYQIDVTRQTISNWESEDTAPNPEQLKRLSKVFDISVDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + D K+I K + + + + K Sbjct: 61 LL--DNEYKSKAILINKVSNTERLAGMIIK 88 >gi|125622888|ref|YP_001031371.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|2909717|gb|AAC12967.1| unknown [Lactococcus lactis subsp. cremoris MG1363] gi|124491696|emb|CAL96615.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300069626|gb|ADJ59026.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 185 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +G ++ R + N TQ+E+A A++ +E+ + + L + Y+ Sbjct: 2 LGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALADLYD 54 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 3/74 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G L+ R K ++Q E K L +S +E +T P + + + + Sbjct: 1 MLGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALADLYD---SDL 57 Query: 173 YFGDEVIVPKSIKR 186 + I P+ K+ Sbjct: 58 LAFSQGIEPQKRKK 71 >gi|315274405|ref|ZP_07869367.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria marthii FSL S4-120] gi|313615952|gb|EFR89134.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria marthii FSL S4-120] Length = 111 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 1/96 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K VG +IK R+ Q+ +A + ++ +ENG + L + Sbjct: 2 ELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKR 61 Query: 87 FDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSI 121 D + + E + +D ++ I Sbjct: 62 LDDFFPERSLPPVDERLVTIAAHIDDDVTDEEMRDI 97 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K R+++G++Q + L T+S YE G ++ ++ K LD Sbjct: 4 NKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLD 63 Query: 171 WIY 173 + Sbjct: 64 DFF 66 >gi|313900623|ref|ZP_07834116.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312954685|gb|EFR36360.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 367 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ N TQ+E+A +S+V+ +E I L + +S D + Sbjct: 6 LGKKLIALRRDANMTQEELAAYMGVSKSSVSKWETETTLPDILLLPQLATLFNVSVDELI 65 Query: 92 DGEVI 96 E Sbjct: 66 GYEPQ 70 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 45/91 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +L ++R+D M+Q E +G+ S++S +E T+P+I ++ + Sbjct: 1 MTTIRLGKKLIALRRDANMTQEELAAYMGVSKSSVSKWETETTLPDILLLPQLATLFNVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 +D + + + +++ + S++ S+ Sbjct: 61 VDELIGYEPQLSMEAVNKLYLQLSAEWSRDS 91 >gi|332653727|ref|ZP_08419471.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332516813|gb|EGJ46418.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 310 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ R TQ+E+A +V+ +E+ + + L + ++ D + Sbjct: 3 FGENLQFYRAREGLTQEELAERLEVSRQSVSKWESNTSFPEMEKLMTLCSLFQTDLDTLV 62 Query: 92 DGEVI 96 G+ Sbjct: 63 RGDAQ 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G L+ R +G++Q E + L + ++S +E + PE++ + + + LD Sbjct: 1 MSFGENLQFYRAREGLTQEELAERLEVSRQSVSKWESNTSFPEMEKLMTLCSLFQTDLDT 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVRGD 65 >gi|302530338|ref|ZP_07282680.1| transcriptional regulator [Streptomyces sp. AA4] gi|302439233|gb|EFL11049.1| transcriptional regulator [Streptomyces sp. AA4] Length = 183 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + VG R++ R+ N T E++ S ++ E+G ++ L + + Sbjct: 5 VEDIIAAVGPRLRHFRRQRNCTLDELSTATGISISTLSRLESGQRKATLELLLPISRAHR 64 Query: 85 ISFDWIY 91 + D + Sbjct: 65 VPLDELV 71 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+ R+ + + E G+ STLS E G+ ++ I + + LD + Sbjct: 11 AVGPRLRHFRRQRNCTLDELSTATGISISTLSRLESGQRKATLELLLPISRAHRVPLDEL 70 Query: 173 Y 173 Sbjct: 71 V 71 >gi|225420264|ref|ZP_03762567.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme DSM 15981] gi|225041081|gb|EEG51327.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme DSM 15981] Length = 177 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 34/91 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K++R TQ+E+A + ++ E + S SI + + S Sbjct: 2 QIGAKLKELRILKGLTQEELADRTELSKGFISQLERDLTSPSIATLMDILQCLGTSIGEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ + + +K I Sbjct: 62 FNETQEEQIVFSKQDYFEKIDTELHNEIKWI 92 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA+LK +R KG++Q E + +S E+ T P I I Q + Sbjct: 1 MQIGAKLKELRILKGLTQEELADRTELSKGFISQLERDLTSPSIATLMDILQCLGTSIGE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + K+ + + + K Sbjct: 61 FFNETQEEQIVFSKQDYFEKIDTELHNEIK 90 >gi|169351011|ref|ZP_02867949.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM 1552] gi|169292073|gb|EDS74206.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM 1552] Length = 117 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 41/93 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G RI++ R + N +Q+ +A +N + ++ E G S+ + + N +S D Sbjct: 5 YELIGKRIREERISQNLSQQTLAEISNISPTNISHIERGATKLSLPTLVSIANALAVSAD 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ +++ + L LK I Sbjct: 65 FLLCDSLVEADKIYIDEINELLLDCNPNELKII 97 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D IG R++ R + +SQ ++ + + +S+ E+G T + I Sbjct: 1 MEIDYELIGKRIREERISQNLSQQTLAEISNISPTNISHIERGATKLSLPTLVSIANALA 60 Query: 167 KHLDWIY 173 D++ Sbjct: 61 VSADFLL 67 >gi|167761292|ref|ZP_02433419.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC 35704] gi|167660958|gb|EDS05088.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC 35704] Length = 134 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ +RK +N TQ ++ N A + +E + + L+L Y +S + + Sbjct: 5 QLANNLRYLRKQHNLTQTTLSNMLNISRQAYSNYETSKRTPDLDSLLHLAGFYHVSLNDL 64 Query: 91 YDGEVIDRR 99 G + D+ Sbjct: 65 VLGSLKDKH 73 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 33/96 (34%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + L+ +RK ++Q +L + SNYE + P++ + Sbjct: 1 MPNIQLANNLRYLRKQHNLTQTTLSNMLNISRQAYSNYETSKRTPDLDSLLHLAGFYHVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 L+ + G + + DKK+ N Sbjct: 61 LNDLVLGSLKDKHVTTSGISEDTIPYALATDKKTGN 96 >gi|25012032|ref|NP_736427.1| hypothetical protein gbs1994 [Streptococcus agalactiae NEM316] gi|77413860|ref|ZP_00790038.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|24413575|emb|CAD47653.1| Unknown [Streptococcus agalactiae NEM316] gi|77160100|gb|EAO71233.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 358 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I R TQ+ ++ + ++ ++ +EN I Y + + N ++IS D + Sbjct: 2 LGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 + + K L A Sbjct: 62 GYQKTLSDDQRNQLIKDLKIKAN 84 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G + R GM+Q L + +T+S +E + P+I + + LD + Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|312961935|ref|ZP_07776432.1| putative transcriptional regulator [Pseudomonas fluorescens WH6] gi|311283745|gb|EFQ62329.1| putative transcriptional regulator [Pseudomonas fluorescens WH6] Length = 178 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 40/98 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +++ +RK T +++A +S ++ E G+ S SI AL L + ++ E Sbjct: 4 QLRILRKKMGITLEQLAGLTGLTKSYLSKVERGVSSPSIAVALKLAKALNAQAEELFSTE 63 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + +++ D A + + + + Q Sbjct: 64 AVPAEGYSLVRRQQRDANDGAAPVAHVPLARHIGQRAL 101 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +L+ +RK G++ + L G+ S LS E+G + P I A K+ + + ++ + Sbjct: 4 QLRILRKKMGITLEQLAGLTGLTKSYLSKVERGVSSPSIAVALKLAKALNAQAEELFSTE 63 >gi|257438852|ref|ZP_05614607.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii A2-165] gi|257198667|gb|EEU96951.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii A2-165] Length = 381 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+ I+ +R+A TQ E+A + ++ +E I L +S + Sbjct: 7 GSTIRQLREAKGLTQAELAGTLSVSAKTISKWETAKGLPDISLLEPLAAALGVSVLELMQ 66 Query: 93 GEVIDRRYE 101 GE I R Sbjct: 67 GEPIINRNR 75 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ Y G+ ++ +R+ KG++Q E L + T+S +E + +P+I + Sbjct: 1 MNTYVTGSTIRQLREAKGLTQAELAGTLSVSAKTISKWETAKGLPDISLLEPLAAALGVS 60 Query: 169 LDWIYFGDEVI 179 + + G+ +I Sbjct: 61 VLELMQGEPII 71 >gi|167755999|ref|ZP_02428126.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] gi|167703991|gb|EDS18570.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] Length = 384 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK +Q+++A N A++ +E+ + +I + + EI+ + + Sbjct: 3 LGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNELL 62 Query: 92 DGEVIDRRYEDV 103 E Sbjct: 63 GLEEDSNDEYAK 74 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G R++S RK KG+SQ + L + LS +E +P I + + + L+ Sbjct: 1 MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNE 60 Query: 172 IYFGDEVIVPKSIK 185 + +E + K Sbjct: 61 LLGLEEDSNDEYAK 74 >gi|125622890|ref|YP_001031373.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124491698|emb|CAL96617.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300069628|gb|ADJ59028.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 107 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RK N +Q+E+A + +++ +E G + + L ++ S D + Sbjct: 2 EISEIIKENRKLKNLSQEELAKELHISRQSISKWETGKSLPTTDQLILLSEIFDCSLDTL 61 Query: 91 YDGEVIDRRYED 102 G+ Sbjct: 62 LKGDKKMEEKVK 73 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 37/83 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +K RK K +SQ E K L + ++S +E G+++P + ++ LD Sbjct: 1 MEISEIIKENRKLKNLSQEELAKELHISRQSISKWETGKSLPTTDQLILLSEIFDCSLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD+ + K ++ K Sbjct: 61 LLKGDKKMEEKVKHEIDDKRTLK 83 >gi|295700669|ref|YP_003608562.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439882|gb|ADG19051.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 215 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ +R T +++ A +S ++ E + +I A L N +S D ++ Sbjct: 38 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 97 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R ++ M+ + + G+ S LS E+ + P I A ++ LD ++ Sbjct: 40 EQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 97 >gi|228940885|ref|ZP_04103444.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973814|ref|ZP_04134390.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980403|ref|ZP_04140713.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis Bt407] gi|228779223|gb|EEM27480.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis Bt407] gi|228785839|gb|EEM33842.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818721|gb|EEM64787.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941562|gb|AEA17458.1| ans operon repressor protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 145 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I ++RK +Q E+A + +E G + + +E+S D++ Sbjct: 2 LGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNK 106 D + K Sbjct: 62 DRTQTKEMVSNNPTK 76 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++ +RK + +SQ E LG L+NYEQG+ P+ +KI + D++ Sbjct: 1 MLGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 K N +K S K+++ Sbjct: 61 L------DRTQTKEMVSNNPTKLSIKEERD 84 >gi|229166214|ref|ZP_04293974.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621] gi|228617312|gb|EEK74377.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621] Length = 107 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQ 129 E + D + + K R+ +Q Sbjct: 62 LHDETTTESHLDSEWTQLVKDAMSSGVSKEQFREFLEFTQ 101 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGDEVIV 180 + + Sbjct: 61 LLHDETTTE 69 >gi|325678167|ref|ZP_08157797.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110172|gb|EGC04358.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 221 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + +QY K+VG R++ +R TQK+ A +S ++ E G S + L Y Sbjct: 5 KSQQYLKEVGERLRGVRLLMGITQKQAAEATGISQSFLSSLERGQKSACTAQIISLIRYY 64 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLD 110 ++ +D I+ E D D + D Sbjct: 65 KVPYDMIFGSETRDYNLSDFPSGGSTD 91 Score = 42.6 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 K + +G RL+ +R G++Q + + G+ S LS+ E+G+ + Sbjct: 1 MNVEKSQQYLKEVGERLRGVRLLMGITQKQAAEATGISQSFLSSLERGQKSACTAQIISL 60 Query: 162 KQVTKKHLDWIYFGD 176 + K D I+ + Sbjct: 61 IRYYKVPYDMIFGSE 75 >gi|228920539|ref|ZP_04083884.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839169|gb|EEM84465.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 181 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|170754766|ref|YP_001780468.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119978|gb|ACA43814.1| HTH domain protein [Clostridium botulinum B1 str. Okra] Length = 381 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 35/96 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A +++V+ +E+G+ I L + IS D + Sbjct: 5 NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILLLPELATYFNISVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + + +L + + Sbjct: 65 LGYSPQLTKEDIGKIYSKLSHEFAVKPFDEVMEQCN 100 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MRELNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILLLPELATYFNIS 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + I Sbjct: 61 VDELLGYSPQLTKEDI 76 >gi|168178240|ref|ZP_02612904.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182670949|gb|EDT82923.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 381 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 34/96 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A +++V+ +E+G I L + IS D + Sbjct: 5 NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + + +L + + Sbjct: 65 LGYSPQLTKEDIGKIYSKLSHEFAVKPFDEVMEQCN 100 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MRELNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNIS 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + I Sbjct: 61 VDELLGYSPQLTKEDI 76 >gi|149178990|ref|ZP_01857565.1| DNA-binding protein [Planctomyces maris DSM 8797] gi|148842189|gb|EDL56577.1| DNA-binding protein [Planctomyces maris DSM 8797] Length = 205 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 47/123 (38%), Gaps = 7/123 (5%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 M NP K+ ++P+ + + R++++RK + ++ S Sbjct: 1 MSANP---ARKKTSATTGSELSPD--EISGQLSQRVRELRKERGWSLDSLSAACGVSRSM 55 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYA--IGARL 118 ++ E G + ++ + + + I+ + + V E + + R Y R+ Sbjct: 56 LSQIERGEANPTLAVTVRISQAFGIALGELVEAPVSTSAIEVIRAEDRTFHYRSDDECRI 115 Query: 119 KSI 121 +++ Sbjct: 116 RTL 118 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 32/84 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK++G S G+ S LS E+G P + +I Q L + Sbjct: 29 QRVRELRKERGWSLDSLSAACGVSRSMLSQIERGEANPTLAVTVRISQAFGIALGELVEA 88 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + RA+ +S + Sbjct: 89 PVSTSAIEVIRAEDRTFHYRSDDE 112 >gi|148554640|ref|YP_001262222.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499830|gb|ABQ68084.1| transcriptional regulator, XRE family with cupin sensor [Sphingomonas wittichii RW1] Length = 201 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 G I+D RK T E+A+ ++ S ++L E G + SI L L ++ Sbjct: 14 MMSFGELIRDRRKRLKLTLNEVALRSDLSVSFISLAERGKATPSIVSLLRLAQALDVDIS 73 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + + + + + ++ Sbjct: 74 YFLAPPQTNNILHRAADPEYYPIDSPVTYIR 104 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + G ++ RK ++ E + S +S E+G+ P I ++ Q + Sbjct: 14 MMSFGELIRDRRKRLKLTLNEVALRSDLSVSFISLAERGKATPSIVSLLRLAQALDVDIS 73 Query: 171 WIY 173 + Sbjct: 74 YFL 76 >gi|22538172|ref|NP_689023.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76798585|ref|ZP_00780814.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|22535081|gb|AAN00896.1|AE014283_15 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76586050|gb|EAO62579.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] Length = 358 Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I R TQ+ ++ + ++ ++ +EN I Y + + N ++IS D + Sbjct: 2 LGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 + + K L A Sbjct: 62 GYQKTLSDDQRNQLIKDLKIKAN 84 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G + R GM+Q L + +T+S +E + P+I + + LD + Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|325971877|ref|YP_004248068.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027115|gb|ADY13874.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 197 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R + TQ+++ ++ +E G ++ L + + IS D + Sbjct: 5 EKLKAYRSSYGLTQEQLGEKVFVSRVTISKWETGRGLPNLGSLQQLASLFGISVDELL 62 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 35/69 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ R G++Q + G+ + + T+S +E GR +P + +++ + +D Sbjct: 1 MQFHEKLKAYRSSYGLTQEQLGEKVFVSRVTISKWETGRGLPNLGSLQQLASLFGISVDE 60 Query: 172 IYFGDEVIV 180 + +E++ Sbjct: 61 LLGSNELVA 69 >gi|319936355|ref|ZP_08010771.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808470|gb|EFW05022.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 176 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K +RK +Q+E+A N AV+ +E G+ + L L ++ +S D + Sbjct: 3 FADNLKQMRKKKGISQEELAQLLNVSRQAVSKWEQGIGYPEVEKLLILSSQLNVSLDSLM 62 Query: 92 DGEVIDRRYEDVTN 105 E+I+ + Sbjct: 63 ADEIINNNTSQDNH 76 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A LK +RK KG+SQ E +LL + +S +EQG PE++ + LD Sbjct: 1 MAFADNLKQMRKKKGISQEELAQLLNVSRQAVSKWEQGIGYPEVEKLLILSSQLNVSLDS 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + DE+I + + + S D KS Sbjct: 61 LMA-DEIINNNTSQDNHCSGRILISSYDGKS 90 >gi|312278268|gb|ADQ62925.1| Putative transcriptional regulator [Streptococcus thermophilus ND03] Length = 229 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K+IR+A +Q +A S+ +ENG + + L + ++ + Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 I Y ++T + R + ++R K + + + + Sbjct: 64 EHEIVEVYLELTEENRQE---------ALRFTKALLEEQEAEK 97 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK IR+ +GMSQ K LG+ S+ N+E G+T P K + ++ + Sbjct: 1 MFSGQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 E++ + Q + + K Sbjct: 61 FLSEHEIVEVYLELTEENRQEALRFTK 87 >gi|262118114|ref|YP_003275884.1| transcriptional regulator, XRE family [Gordonia bronchialis DSM 43247] gi|262088024|gb|ACY23991.1| transcriptional regulator, XRE family [Gordonia bronchialis DSM 43247] Length = 181 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 17/151 (11%) Query: 48 KEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 +++A AV+ + G + S + +S + Sbjct: 48 EDLADSIGVSRQAVSSWLTGQTTPSPTSLVRAAEILNLSPADLTP--------------- 92 Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 A L +R G++Q +F L +P STLS+ E+GR+ + A ++ V + Sbjct: 93 --HVAAANVHLADLRVRAGLTQAQFAAKLKIPASTLSDIERGRSRYDDLLASRMAAVLEL 150 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 D + E V + + ++++ +K Sbjct: 151 PEDEVASAWEQAVVDRTRAREQADAARRRRK 181 Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + D+R TQ + A S ++ E G A + E+ D Sbjct: 101 LADLRVRAGLTQAQFAAKLKIPASTLSDIERGRSRYDDLLASRMAAVLELPEDE 154 Score = 40.7 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 5/46 (10%), Positives = 18/46 (39%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ + +G+ +S++ G+T P + ++ + Sbjct: 45 LAAEDLADSIGVSRQAVSSWLTGQTTPSPTSLVRAAEILNLSPADL 90 >gi|305681668|ref|ZP_07404474.1| bacteriophage CI repressor protein [Corynebacterium matruchotii ATCC 14266] gi|305658828|gb|EFM48329.1| bacteriophage CI repressor protein [Corynebacterium matruchotii ATCC 14266] Length = 95 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 41/82 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + + R++ R+ G+ Q + +L G+ ++SN+E G+T+P I T +L Sbjct: 12 QWELQDRIQRARRHAGLEQGQLAELAGVSRKSVSNWEIGKTVPRRSALIAIAFATGVNLY 71 Query: 171 WIYFGDEVIVPKSIKRAKGNQS 192 W+ G+ P+ +K AK S Sbjct: 72 WLETGESPYPPEPVKDAKSGNS 93 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ R+ Q ++A A +V+ +E G + + ++ W+ Sbjct: 14 ELQDRIQRARRHAGLEQGQLAELAGVSRKSVSNWEIGKTVPRRSALIAIAFATGVNLYWL 73 Query: 91 YDGEVI 96 GE Sbjct: 74 ETGESP 79 >gi|229548807|ref|ZP_04437532.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|229306036|gb|EEN72032.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] Length = 101 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 36/99 (36%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 +I I ++ ++ + + + R M+Q + +G+ T+ E+ Sbjct: 3 YIQGAHSILSSFKGGNAMRKKKKSSFESSIHVYRAMARMTQQDLANRIGVSRQTIIQLER 62 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 + P + A I V +D ++ E + + A Sbjct: 63 NKYNPSLLLAHDIANVFGVTIDDVFTFKETLNDDVEQEA 101 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I R TQ+++A + E + S+ A + N + ++ D ++ Sbjct: 32 IHVYRAMARMTQQDLANRIGVSRQTIIQLERNKYNPSLLLAHDIANVFGVTIDDVFT 88 >gi|227520115|ref|ZP_03950164.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227554980|ref|ZP_03985027.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229546714|ref|ZP_04435439.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|255971323|ref|ZP_05421909.1| predicted protein [Enterococcus faecalis T1] gi|255973942|ref|ZP_05424528.1| predicted protein [Enterococcus faecalis T2] gi|256617741|ref|ZP_05474587.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256761627|ref|ZP_05502207.1| predicted protein [Enterococcus faecalis T3] gi|256957270|ref|ZP_05561441.1| predicted protein [Enterococcus faecalis DS5] gi|256959996|ref|ZP_05564167.1| predicted protein [Enterococcus faecalis Merz96] gi|256964308|ref|ZP_05568479.1| predicted protein [Enterococcus faecalis HIP11704] gi|257077756|ref|ZP_05572117.1| predicted protein [Enterococcus faecalis JH1] gi|257081116|ref|ZP_05575477.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|257083785|ref|ZP_05578146.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257086210|ref|ZP_05580571.1| predicted protein [Enterococcus faecalis D6] gi|257089282|ref|ZP_05583643.1| predicted protein [Enterococcus faecalis CH188] gi|257415435|ref|ZP_05592429.1| predicted protein [Enterococcus faecalis AR01/DG] gi|257418466|ref|ZP_05595460.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|293383748|ref|ZP_06629655.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293388776|ref|ZP_06633269.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|307267947|ref|ZP_07549335.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307271869|ref|ZP_07553137.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307277295|ref|ZP_07558398.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307278434|ref|ZP_07559509.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307286678|ref|ZP_07566764.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|307292450|ref|ZP_07572305.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312901588|ref|ZP_07760861.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312904430|ref|ZP_07763589.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312907036|ref|ZP_07766032.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312952861|ref|ZP_07771723.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978706|ref|ZP_07790433.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|227072459|gb|EEI10422.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227175889|gb|EEI56861.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229308174|gb|EEN74161.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|255962341|gb|EET94817.1| predicted protein [Enterococcus faecalis T1] gi|255966814|gb|EET97436.1| predicted protein [Enterococcus faecalis T2] gi|256597268|gb|EEU16444.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256682878|gb|EEU22573.1| predicted protein [Enterococcus faecalis T3] gi|256947766|gb|EEU64398.1| predicted protein [Enterococcus faecalis DS5] gi|256950492|gb|EEU67124.1| predicted protein [Enterococcus faecalis Merz96] gi|256954804|gb|EEU71436.1| predicted protein [Enterococcus faecalis HIP11704] gi|256985786|gb|EEU73088.1| predicted protein [Enterococcus faecalis JH1] gi|256989146|gb|EEU76448.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256991815|gb|EEU79117.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256994240|gb|EEU81542.1| predicted protein [Enterococcus faecalis D6] gi|256998094|gb|EEU84614.1| predicted protein [Enterococcus faecalis CH188] gi|257157263|gb|EEU87223.1| predicted protein [Enterococcus faecalis ARO1/DG] gi|257160294|gb|EEU90254.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|291078824|gb|EFE16188.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291081933|gb|EFE18896.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|306496495|gb|EFM66057.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306502156|gb|EFM71440.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306504940|gb|EFM74135.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306506029|gb|EFM75196.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306511375|gb|EFM80377.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306515588|gb|EFM84115.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310627021|gb|EFQ10304.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310629377|gb|EFQ12660.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310632128|gb|EFQ15411.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288413|gb|EFQ66969.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311291383|gb|EFQ69939.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315027056|gb|EFT38988.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315029041|gb|EFT40973.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315032500|gb|EFT44432.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315034266|gb|EFT46198.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315145162|gb|EFT89178.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315148028|gb|EFT92044.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315149631|gb|EFT93647.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315152943|gb|EFT96959.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315155174|gb|EFT99190.1| helix-turn-helix protein [Enterococcus faecalis TX0043] gi|315157502|gb|EFU01519.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315163070|gb|EFU07087.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315165270|gb|EFU09287.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315167995|gb|EFU12012.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315171773|gb|EFU15790.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|315174886|gb|EFU18903.1| helix-turn-helix protein [Enterococcus faecalis TX1346] gi|315574217|gb|EFU86408.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315577347|gb|EFU89538.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315581640|gb|EFU93831.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|327534452|gb|AEA93286.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] gi|329577861|gb|EGG59282.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 101 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 36/99 (36%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 +I I ++ ++ + + + R M+Q + +G+ T+ E+ Sbjct: 3 YIQGAHSILSSFKGGNAMRKKKKSSFESSIHVYRAMARMTQQDLANRVGVSRQTIIQLER 62 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 + P + A I V +D ++ E + + A Sbjct: 63 NKYNPSLLLAHDIANVFGVTIDDVFTFKETLNDDVEQEA 101 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I R TQ+++A + E + S+ A + N + ++ D ++ Sbjct: 32 IHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVFGVTIDDVFT 88 >gi|254173699|ref|ZP_04880371.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4] gi|214032391|gb|EEB73221.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4] Length = 65 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R+A TQ+E+A + E G S+R A + + + I+ Sbjct: 3 NRLRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGAKIEDIFIY 62 Query: 94 EVI 96 + Sbjct: 63 DGD 65 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+ +G++Q E K LG+ T+ E+G+ P ++ A KI + ++ I+ Sbjct: 1 MKNRLRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGAKIEDIF 60 Query: 174 FGD 176 D Sbjct: 61 IYD 63 >gi|197658942|emb|CAR47815.1| putative transcription regulator [Rhodococcus sp. PY11] Length = 161 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 18/137 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R +Q E+A A V +E G S + + ++ Sbjct: 27 LRQARLNAGLSQTEIARVAKVGTGTVRRWEMGESSPQVDLLARVVEVLGVTI-------- 78 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 D + D R G++Q + G G+ +S E+G Sbjct: 79 ADVVKVPEAERYPGDW----------RVLLGLTQPQLGAKAGVTTQIVSCVERGVISLSD 128 Query: 156 KPARKIKQVTKKHLDWI 172 ++ D + Sbjct: 129 NVGERLSAALGISEDEL 145 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R + G+SQ E ++ + T+ +E G + P++ ++ +V + Sbjct: 22 FRPDALRQARLNAGLSQTEIARVAKVGTGTVRRWEMGESSPQVDLLARVVEVLGVTI 78 >gi|157734756|dbj|BAF80762.1| prophage repressor [Enterobacteria phage P22] Length = 216 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L + S D++ Sbjct: 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGESLLALSKALQCSPDYLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G++ + + Y + + + Sbjct: 66 KGDLSQTNVAYHSRHEPRGSYPLISWV 92 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+++ RK + Q GK++G+ N +S +E+ T P + + + + Sbjct: 1 MNTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGESLLALSKALQCS 60 Query: 169 LDWIYFGD 176 D++ GD Sbjct: 61 PDYLLKGD 68 >gi|307127250|ref|YP_003879281.1| hypothetical protein SP670_1118 [Streptococcus pneumoniae 670-6B] gi|306484312|gb|ADM91181.1| conserved domain protein [Streptococcus pneumoniae 670-6B] Length = 74 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 34 TRIKDIRKANNKTQKEMAIG-ANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+D+R+ ++ TQ+ +A N SA + E+G SI + L + Y +S D++ Sbjct: 3 KRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYLVG 62 Query: 93 GEVIDRRYEDVT 104 + Sbjct: 63 RVDNKEDHYSKK 74 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGK-LLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R++ +R+D ++Q K +L S S E G + I K+ LD++ Sbjct: 1 MLKRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYL 60 Query: 173 YFGDEVIVPKSIKR 186 + K+ Sbjct: 61 VGRVDNKEDHYSKK 74 >gi|291521206|emb|CBK79499.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 128 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 42/120 (35%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + ++G RI+ R + Q E+A + + ++ E G+ + + + + Sbjct: 3 NENERFVEMGKRIRTRRLSLKMKQMELAEEVDISNNHISSIERGIERPGLDSFIRICDVL 62 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 +++ D++ G + RL + Q + K + S+ Sbjct: 63 DVTPDYLLLGSMKSNNVPKNITDNLKLCTDEEIRLVEAMTQYLVEQHKKVKSVKETKSSW 122 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R+++ R M Q+E + + + N+ +S+ E+G P + +I V D Sbjct: 8 FVEMGKRIRTRRLSLKMKQMELAEEVDISNNHISSIERGIERPGLDSFIRICDVLDVTPD 67 Query: 171 WIYFG 175 ++ G Sbjct: 68 YLLLG 72 >gi|289579258|ref|YP_003477885.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528971|gb|ADD03323.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 117 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G ++K++R+ N TQ E+ ++ +ENG I L + Y S + Sbjct: 4 YKAIGEKLKEVREKNGYTQAEVEKATGIKREMLSYYENGRREIDIATLEKLASFYGYSIE 63 Query: 89 WIYDGEVIDRRYEDVTNK 106 + Sbjct: 64 YFIKNTEEPEVTLAFRTD 81 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 32/79 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 AIG +LK +R+ G +Q E K G+ LS YE GR +I K+ ++ Sbjct: 4 YKAIGEKLKEVREKNGYTQAEVEKATGIKREMLSYYENGRREIDIATLEKLASFYGYSIE 63 Query: 171 WIYFGDEVIVPKSIKRAKG 189 + E R G Sbjct: 64 YFIKNTEEPEVTLAFRTDG 82 >gi|237731126|ref|ZP_04561607.1| P22 repressor protein c2 [Citrobacter sp. 30_2] gi|226906665|gb|EEH92583.1| P22 repressor protein c2 [Citrobacter sp. 30_2] Length = 208 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RIK +R+ +QKE+ + AV +E + L + S D Sbjct: 1 METVGQRIKALRRVTKTSQKELGKFCGVSDVAVGYWEKDINVPGGESLSKLAKYFNTSID 60 Query: 89 WIYDGEVID 97 +I G + Sbjct: 61 YILYGTEFE 69 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K++R+ SQ E GK G+ + + +E+ +P + K+ + +D+I +G Sbjct: 6 QRIKALRRVTKTSQKELGKFCGVSDVAVGYWEKDINVPGGESLSKLAKYFNTSIDYILYG 65 Query: 176 DE 177 E Sbjct: 66 TE 67 >gi|84499939|ref|ZP_00998205.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391873|gb|EAQ04141.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 211 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +++ +R+ T +++A A S ++ EN S + L L ++ + Sbjct: 17 FGQKVRTLRRGKGLTLQQVADRAGMAGSTISKIENSNLSPTFDGLLKLARGLDVDLSTLL 76 Query: 92 DGEVIDRRYEDVTNKKRLD 110 +GE + RLD Sbjct: 77 EGEGGATATSPAPSIGRLD 95 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G +++++R+ KG++ + GM ST+S E P K+ + L + Sbjct: 16 AFGQKVRTLRRGKGLTLQQVADRAGMAGSTISKIENSNLSPTFDGLLKLARGLDVDLSTL 75 Query: 173 YFGD 176 G+ Sbjct: 76 LEGE 79 >gi|319935739|ref|ZP_08010169.1| hypothetical protein HMPREF9488_01000 [Coprobacillus sp. 29_1] gi|319809288|gb|EFW05729.1| hypothetical protein HMPREF9488_01000 [Coprobacillus sp. 29_1] Length = 154 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++ +RK + +Q+E+A + ++ +E+ ++ A L N Y +S D + Sbjct: 2 LGEKLMRLRKKHGYSQQEVADLISVTRQTISNWESDQGIPTLDKARMLANLYNVSLDDL 60 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +L +RK G SQ E L+ + T+SN+E + IP + AR + + LD + Sbjct: 1 MLGEKLMRLRKKHGYSQQEVADLISVTRQTISNWESDQGIPTLDKARMLANLYNVSLDDL 60 Query: 173 YFGD-EVIVPKSIKR 186 D EVI+ + K+ Sbjct: 61 TENDVEVIIKEKAKK 75 >gi|167463515|ref|ZP_02328604.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 151 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 19/167 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK TQ E+A S ENG + S + + + + D++ Sbjct: 3 IGERIRQRRKLLQITQLEIAEQLKMGRSNFGHIENGRVTPSSSDLQKIADILQTNADYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 K +A K R K M Q E Sbjct: 63 GRTDDPSPQGAAAGLKTYPEWATS---KDKRDLKKMLQSP-------DVLYFDGIEFSDE 112 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ ++ I++ + + + ++++ ++++ +K+ Sbjct: 113 DR--------AKILGV-METIFWEAKKMNKEVNRKSREKKNNRNNKE 150 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG R++ RK ++Q+E + L M S + E GR P +KI + + + D+ Sbjct: 1 MSIGERIRQRRKLLQITQLEIAEQLKMGRSNFGHIENGRVTPSSSDLQKIADILQTNADY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + P+ + KDK+ Sbjct: 61 LLGRTDDPSPQGAAAGLKTYPEWATSKDKRD 91 >gi|52143637|ref|YP_083193.1| MerR family transcriptional regulator [Bacillus cereus E33L] gi|196039098|ref|ZP_03106405.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|51977106|gb|AAU18656.1| transcriptional regulator, MerR family [Bacillus cereus E33L] gi|196030243|gb|EDX68843.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 181 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|325678257|ref|ZP_08157885.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110020|gb|EGC04208.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 254 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I+++R +Q+++A AV+ +E G S L +++S + I Sbjct: 7 IRELRTKAGLSQEDLANKVYVTRQAVSRWEKGETVPSTDTLKLLSALFDVSINTIL 62 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ +R G+SQ + + + +S +E+G T+P + + + ++ Sbjct: 1 MQTQEMIRELRTKAGLSQEDLANKVYVTRQAVSRWEKGETVPSTDTLKLLSALFDVSINT 60 Query: 172 IY 173 I Sbjct: 61 IL 62 >gi|254249607|ref|ZP_04942927.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124876108|gb|EAY66098.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 195 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + W+ + R+K +RK T +A +S ++ E G+ SI AL L + Sbjct: 10 KDTWRPMTIRLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNV 69 Query: 86 SFDWIY 91 + ++ Sbjct: 70 DVEQLF 75 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +RK KG + G+ S LS E+G ++P I A K+ + ++ Sbjct: 13 WRPMTIRLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVE 72 Query: 171 WIYFGDEVIVPKSIKRA 187 ++ ++ RA Sbjct: 73 QLFSESRNRELITVTRA 89 >gi|302541725|ref|ZP_07294067.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302459343|gb|EFL22436.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 199 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 4/114 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 V R++D+R+ + T + A + ++ E G S+ L L Y + Sbjct: 1 MPTVAPRLRDLRRGSGLTLEAAAHRVGLSPAHLSRLETGRRQPSLPMLLALARTYGTTVS 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + GEV + V + A G R+ G + L +P S+ Sbjct: 61 DLL-GEVPPSQDPIVRADRMEAQEAGGWT---YRRAGGSGRAMQALRLHVPESS 110 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R+ G++ +G+ + LS E GR P + + + + + G+ Sbjct: 8 LRDLRRGSGLTLEAAAHRVGLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSDLL-GEV 66 Query: 178 VIVPKSIKRAK 188 I RA Sbjct: 67 PPSQDPIVRAD 77 >gi|206970891|ref|ZP_03231843.1| DNA-binding protein [Bacillus cereus AH1134] gi|229189930|ref|ZP_04316940.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206734527|gb|EDZ51697.1| DNA-binding protein [Bacillus cereus AH1134] gi|228593604|gb|EEK51413.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 181 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|76787698|ref|YP_330569.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76562755|gb|ABA45339.1| DNA-binding protein [Streptococcus agalactiae A909] Length = 358 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I R TQ+ ++ + ++ ++ +EN I Y + + N ++IS D + Sbjct: 2 LGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 + + K L A Sbjct: 62 GYQKTLSDDQRNQLIKDLKIKAN 84 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G + R GM+Q L + +T+S +E + P+I + + LD + Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|310829202|ref|YP_003961559.1| XRE family transcriptional regulator [Eubacterium limosum KIST612] gi|308740936|gb|ADO38596.1| XRE family transcriptional regulator [Eubacterium limosum KIST612] Length = 123 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 33/76 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G+R+K +R + N TQ++ A +S+++ +E + + + + +++S D++ Sbjct: 6 FGSRLKALRLSKNLTQEKFANIFYLNKSSISKYEKDKNLPENQLLIKIADFFDVSVDYLL 65 Query: 92 DGEVIDRRYEDVTNKK 107 + Sbjct: 66 CRTSQQKLLPSNPKPM 81 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ G+RLK++R K ++Q +F + + S++S YE+ + +PE + KI Sbjct: 1 MENNTFGSRLKALRLSKNLTQEKFANIFYLNKSSISKYEKDKNLPENQLLIKIADFFDVS 60 Query: 169 LDWIY 173 +D++ Sbjct: 61 VDYLL 65 >gi|257869016|ref|ZP_05648669.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257803180|gb|EEV32002.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 397 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I RK TQ E+A + +++V+ +E G I L ++ S D + Sbjct: 5 IGQEIAKRRKDKQITQTELADFMSVSKASVSKWETGQSYPDITLLPLLAAFFDCSVDDLL 64 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + RKDK ++Q E + + +++S +E G++ P+I + +D + Sbjct: 7 QEIAKRRKDKQITQTELADFMSVSKASVSKWETGQSYPDITLLPLLAAFFDCSVDDLLVI 66 Query: 176 DEVIVPKSIKR 186 + + + IKR Sbjct: 67 NSQLTTQEIKR 77 >gi|195977160|ref|YP_002122404.1| hypothetical protein Sez_0004 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973865|gb|ACG61391.1| hypothetical protein Sez_0004 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 121 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 31/92 (33%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++K R +Q +A A++ +ENG + + + L E++ D Sbjct: 2 MTKFAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATLDLENLVTLAAVLEVTLD 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + G+ + T K + K Sbjct: 62 ELVTGKESAIKVTKKTEKPMNVWEFLTEESKR 93 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK R +K +SQ + L + +S +E G +++ + V + LD Sbjct: 2 MTKFAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATLDLENLVTLAAVLEVTLD 61 Query: 171 WIYFGDEVIVPKSIKRAK 188 + G E + + K K Sbjct: 62 ELVTGKESAIKVTKKTEK 79 >gi|170751194|ref|YP_001757454.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657716|gb|ACB26771.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 201 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 29/70 (41%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 T + + + +G +++ +R+ + +++ A V+ ENG S S+ + Sbjct: 10 TEDGKSLERALGHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPSLATVNAVAK 69 Query: 82 EYEISFDWIY 91 + ++ Sbjct: 70 ALNVPITTLF 79 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G +++++R+++ +S + G+ +S E G+ P + + + + + Sbjct: 19 ALGHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPSLATVNAVAKALNVPITTL 78 Query: 173 Y-FGDEVIVPKSIKRAKGNQSSKKSKK 198 + +E +K+ G ++ K Sbjct: 79 FAAFEESRDCSYVKKGTGVVIERRGTK 105 >gi|153940476|ref|YP_001390199.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936372|gb|ABS41870.1| DNA-binding protein [Clostridium botulinum F str. Langeland] Length = 373 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 37/102 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A +++V+ +E+G+ I + L + IS D + Sbjct: 5 NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + +L + ++ Sbjct: 65 LGYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKY 106 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MRGLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK+ Sbjct: 61 VDELLGYSPQLTKEDIKK 78 >gi|148378839|ref|YP_001253380.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932486|ref|YP_001383224.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153934537|ref|YP_001386771.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288323|emb|CAL82400.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928530|gb|ABS34030.1| HTH domain protein [Clostridium botulinum A str. ATCC 19397] gi|152930451|gb|ABS35950.1| HTH domain protein [Clostridium botulinum A str. Hall] Length = 373 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 35/102 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A +++V+ +E+G I L + IS D + Sbjct: 5 NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + +L + ++ Sbjct: 65 LGYSPQLTKEDIKKIYSKLSHEFAVRPFDEAMEQCNKLIKKY 106 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK+ Sbjct: 61 VDELLGYSPQLTKEDIKK 78 >gi|116514765|ref|YP_813671.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116094080|gb|ABJ59233.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 119 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 35/78 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++D+R+ +Q+E+A+ + ++ +E G ++ + N + +S + I Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVSRNSIL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 G ++ + L Sbjct: 66 AGLPVEMLEQADRRVVDL 83 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG L+ +R+ +GMSQ E LG+ T+SN+E GR +P +K KI + Sbjct: 1 MEKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60 Query: 169 LDWIYFG 175 + I G Sbjct: 61 RNSILAG 67 >gi|332716566|ref|YP_004444032.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063251|gb|ADY66941.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 225 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 28/85 (32%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P + +G ++ RK T ++A ++ ENG S S+ Sbjct: 20 QDPHAVREPRVNNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSLT 79 Query: 75 YALYLRNEYEISFDWIYDGEVIDRR 99 L + + G R Sbjct: 80 TLQTLSKALGVPITAFFRGFEEPRS 104 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 5/110 (4%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + R V N + AIG +++ RK G++ + G+ LS E G Sbjct: 17 LLSQDPHAVREPRVNNLE----MAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENG 72 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKK 198 P + + + + + + G +E +K +G ++ + Sbjct: 73 NISPSLTTLQTLSKALGVPITAFFRGFEEPRSATFVKAGQGVNIERRGTR 122 >gi|225569728|ref|ZP_03778753.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM 15053] gi|225161198|gb|EEG73817.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM 15053] Length = 114 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +K +R N +Q+++A + + + +ENG+ ++ + + ++ S D++ Sbjct: 2 NIVKNLKKLRTERNLSQQQLADMLHTTQQNIYKYENGISEPNLETLKNMADHFQTSIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 R++ + ++ RK Sbjct: 62 VG--YTSIRHKIEPVSEYDLNSDEQTLIQKYRK 92 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK +R ++ +SQ + +L + YE G + P ++ + + + +D+ Sbjct: 1 MNIVKNLKKLRTERNLSQQQLADMLHTTQQNIYKYENGISEPNLETLKNMADHFQTSIDY 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|159186071|ref|NP_356428.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159141205|gb|AAK89213.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 208 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 28/85 (32%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P + +G ++ RK T ++A ++ ENG S S+ Sbjct: 3 QDPHAVREPRVNNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSLT 62 Query: 75 YALYLRNEYEISFDWIYDGEVIDRR 99 L + + G R Sbjct: 63 TLQTLSKALGVPITAFFRGFEEPRS 87 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG +++ RK G++ + G+ LS E G P + + + + + Sbjct: 18 MAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSLTTLQTLSKALGVPITA 77 Query: 172 IYFG-DEVIVPKSIKRAKGNQSSKKSKK 198 + G +E +K +G ++ + Sbjct: 78 FFRGFEEPRSATFVKAGQGVNIERRGTR 105 >gi|77407989|ref|ZP_00784738.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77173351|gb|EAO76471.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 358 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I R TQ+ ++ + ++ ++ +EN I Y + + N ++IS D + Sbjct: 2 LGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 + + K L A Sbjct: 62 GYQKTLSDDQRNQLIKDLKIKAN 84 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G + R GM+Q L + +T+S +E + P+I + + LD + Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|239504169|ref|ZP_04663479.1| putative repressor protein from bacteriophage [Acinetobacter baumannii AB900] Length = 254 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G RI+ +R+ TQ E+A A V +E + + + +S + Sbjct: 5 ETMGQRIRALRREKKLTQGELAKIAGVSAPNVTGWEKDAYAPKADPLSKMAAYFGVSTSY 64 Query: 90 IYDG-EVIDRRYEDVTNKKRLDPYAIGA 116 I +G E + VT K LD A Sbjct: 65 ITNGDESGPKLDSTVTQLKVLDIEAFKK 92 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R++++R++K ++Q E K+ G+ ++ +E+ P+ P K+ +I Sbjct: 7 MGQRIRALRREKKLTQGELAKIAGVSAPNVTGWEKDAYAPKADPLSKMAAYFGVSTSYIT 66 Query: 174 FGDEVIVP 181 GDE Sbjct: 67 NGDESGPK 74 >gi|238925877|ref|YP_002939395.1| hypothetical protein EUBREC_3535 [Eubacterium rectale ATCC 33656] gi|238877554|gb|ACR77261.1| Hypothetical protein EUBREC_3535 [Eubacterium rectale ATCC 33656] Length = 105 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RIK R+A N TQ+E+A N + V++ E G+ T + + + N ++S D Sbjct: 4 KAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADT 63 Query: 90 IY----DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + V E ++L +K I Sbjct: 64 LLIDVVAHSVTGVTNELTEKIEKLPIKEQKKIIKVIHT 101 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A+G R+KS R+ K ++Q E L+ + + +S E+G + ++ I Sbjct: 1 MDLKAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 D + + + K K++K Sbjct: 61 ADTLLIDVVAHSVTGVTNELTEKIEKLPIKEQKK 94 >gi|259909801|ref|YP_002650157.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|259909810|ref|YP_002650166.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965423|emb|CAX56955.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965432|emb|CAX56964.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 130 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 38/108 (35%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 + + ++ + + ++K +G RI RK TQ ++A + + +E G Sbjct: 3 MLTTRQLQQAMNTKDEAFFKQLGARIAQSRKEQQLTQTQLAEQLGIAQQTMAHYEGGKLK 62 Query: 71 TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 S L +S D + R + + I ++L Sbjct: 63 VSAALLPQLAQILNLSLDELLGLSAQGRSGKRGPASRLEQQIEIISQL 110 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + + K +GAR+ RK++ ++Q + + LG+ T+++YE G+ Sbjct: 5 TTRQLQQAMNTKDEAFFKQLGARIAQSRKEQQLTQTQLAEQLGIAQQTMAHYEGGKLKVS 64 Query: 155 IKPARKIKQVTKKHLDWIY 173 ++ Q+ LD + Sbjct: 65 AALLPQLAQILNLSLDELL 83 >gi|221195296|ref|ZP_03568352.1| transcriptional regulator [Atopobium rimae ATCC 49626] gi|221185199|gb|EEE17590.1| transcriptional regulator [Atopobium rimae ATCC 49626] Length = 142 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 29/69 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++RK ++ +Q+E+A ++ +E G I +L N + ++ D + Sbjct: 3 FAENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKHLANVFGVTIDDLI 62 Query: 92 DGEVIDRRY 100 + + Sbjct: 63 SYDKKNEDN 71 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L +RK SQ E ++G+ TLS YE G ++P+I+ + + V +D Sbjct: 1 MSFAENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKHLANVFGVTIDD 60 Query: 172 IYFGDE 177 + D+ Sbjct: 61 LISYDK 66 >gi|154499890|ref|ZP_02037928.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] gi|150271488|gb|EDM98745.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] Length = 451 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 33/86 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+ I +R+ TQKE+A + AV+ +E G I L ++ D + Sbjct: 41 GSFIASLRREKGMTQKELASLLGISDKAVSKWERGESYPEITLFPALGATLGVTADELMA 100 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + R+ A+ L Sbjct: 101 GERQPHTPTEAPEPVRIPEQALYPLL 126 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + +D G+ + S+R++KGM+Q E LLG+ + +S +E+G + PEI Sbjct: 24 YAGDRKKEVPHMDSIRTGSFIASLRREKGMTQKELASLLGISDKAVSKWERGESYPEITL 83 Query: 158 ARKIKQVTKKHLDWIYFGD 176 + D + G+ Sbjct: 84 FPALGATLGVTADELMAGE 102 >gi|323141018|ref|ZP_08075925.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414507|gb|EFY05319.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 120 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 34/92 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G IK +R + +Q+ +A N ++ ++ ENG S+ A+ + + S D Sbjct: 10 YKLIGNNIKQMRTKSQVSQQSLAKAINISQTHMSNLENGKTGVSLAIAIRISQHLKCSLD 69 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + G LK Sbjct: 70 ELIFGTNKKSYPAASKPLSDHTVDEFNQLLKR 101 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG +K +R +SQ K + + + +SN E G+T + A +I Q K L Sbjct: 9 DYKLIGNNIKQMRTKSQVSQQSLAKAINISQTHMSNLENGKTGVSLAIAIRISQHLKCSL 68 Query: 170 DWIYFG 175 D + FG Sbjct: 69 DELIFG 74 >gi|293365764|ref|ZP_06612471.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|291315767|gb|EFE56213.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] Length = 71 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K RI+++RK +Q+ +A + ++ +E G S+ A + + ++ D Sbjct: 2 RKQTQNRIRELRKKARLSQQALADQIGVFRNTISNWETGYSQISLENAKNVAEYFGVTID 61 Query: 89 WIYDGEVI 96 ++ E Sbjct: 62 YLLGSESD 69 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +RK +SQ +G+ +T+SN+E G + ++ A+ + + +D++ Sbjct: 5 TQNRIRELRKKARLSQQALADQIGVFRNTISNWETGYSQISLENAKNVAEYFGVTIDYLL 64 Query: 174 FGD 176 + Sbjct: 65 GSE 67 >gi|251800040|ref|YP_003014771.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547666|gb|ACT04685.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 182 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+ I+ IRK N T ++ + ++ E S SI + N ++ ++ Sbjct: 2 DIGSAIRAIRKRKNITIAQICEETGLSQGFMSQVETNKTSPSITTLESIANALKVPLAYL 61 Query: 91 YDGEVIDRRYEDVTNKK 107 + + ++ Sbjct: 62 LLDKKEKMQIVRKDGRR 78 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 2/93 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ +++IRK K ++ + + G+ +S E +T P I I K L + Sbjct: 1 MDIGSAIRAIRKRKNITIAQICEETGLSQGFMSQVETNKTSPSITTLESIANALKVPLAY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + I R G + + K S+ Sbjct: 61 LLLDKKE--KMQIVRKDGRRITTSGPDKLKVSH 91 >gi|196033431|ref|ZP_03100843.1| DNA-binding protein [Bacillus cereus W] gi|229196038|ref|ZP_04322790.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|195993865|gb|EDX57821.1| DNA-binding protein [Bacillus cereus W] gi|228587420|gb|EEK45486.1| Transcriptional regulator, MerR [Bacillus cereus m1293] Length = 181 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|167770470|ref|ZP_02442523.1| hypothetical protein ANACOL_01815 [Anaerotruncus colihominis DSM 17241] gi|167667065|gb|EDS11195.1| hypothetical protein ANACOL_01815 [Anaerotruncus colihominis DSM 17241] Length = 71 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K++R A +Q +A + +E G ++ + L + +++S D++ Sbjct: 5 KRLKELRNAKGTSQIAIAAALGITDRGYRKYEAGDSEPTLSVIIALADYFDVSLDYL 61 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R KG SQI LG+ + YE G + P + + LD+ Sbjct: 1 MIFQKRLKELRNAKGTSQIAIAAALGITDRGYRKYEAGDSEPTLSVIIALADYFDVSLDY 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|163795463|ref|ZP_02189430.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] gi|159179449|gb|EDP63980.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] Length = 481 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 6/134 (4%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E +G +I+ R +Q EMA S +NL E+ ++ L Sbjct: 1 MATERLDRKAMLGHKIRRFRLDQGLSQTEMAAQIGISPSYLNLIEHNQRPVTVPLLFKLG 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-- 138 N +EI E D+R ++ DP G + R+ + + G+ Sbjct: 61 NAFEIDLKEF--AEDDDQRLAAGLSEVFGDPLFEGQAVSE-REMRELVASAPAAAQGVLT 117 Query: 139 -PNSTLSNYEQGRT 151 + +E + Sbjct: 118 LYRAYRRIWENAQA 131 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 107 KRLDPYAI-GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +RLD A+ G +++ R D+G+SQ E +G+ S L+ E + + K+ Sbjct: 4 ERLDRKAMLGHKIRRFRLDQGLSQTEMAAQIGISPSYLNLIEHNQRPVTVPLLFKLGNAF 63 Query: 166 KKHLDWIYFGDE 177 + L D+ Sbjct: 64 EIDLKEFAEDDD 75 >gi|328956524|ref|YP_004373910.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] gi|328672848|gb|AEB28894.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] Length = 96 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 42/91 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI+++RK NN T KE++ N ++ EN S++ ++ + ++ Sbjct: 2 EIGNRIQELRKLNNMTAKELSERINVSPPFISAIENNSTKLSLKTLAHICDVLGVTISEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ E+ + ++ K+L L + Sbjct: 62 FNSEISPVEQKLISQIKQLPEEKQYELLAFL 92 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R++ +RK M+ E + + + +S E T +K I V + Sbjct: 1 MEIGNRIQELRKLNNMTAKELSERINVSPPFISAIENNSTKLSLKTLAHICDVLGVTISE 60 Query: 172 IYFGDEVIVPKSI 184 + + V + + Sbjct: 61 FFNSEISPVEQKL 73 >gi|210621510|ref|ZP_03292670.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275] gi|210154709|gb|EEA85715.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275] Length = 136 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I +RK TQ ++A + AV+ +E + I L +++S D + Sbjct: 6 FGEMISSLRKDRGMTQLDLAKKMGVTDKAVSKWERDLSFPDINSIPKLAEIFDVSVDELM 65 Query: 92 DGEVI 96 + Sbjct: 66 QVKSD 70 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + G + S+RKD+GM+Q++ K +G+ + +S +E+ + P+I K+ ++ Sbjct: 1 MNKQSFGEMISSLRKDRGMTQLDLAKKMGVTDKAVSKWERDLSFPDINSIPKLAEIFDVS 60 Query: 169 LDWIY---FGDEVIVPKSIKRAKGNQSSKKSKK 198 +D + V + +K +K + + K Sbjct: 61 VDELMQVKSDVNVGEEEVVKESKFEEVMDVAPK 93 >gi|55820932|ref|YP_139374.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55822854|ref|YP_141295.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] gi|55736917|gb|AAV60559.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55738839|gb|AAV62480.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 9/103 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K+IR+A +Q +A S+ +ENG + + L + ++ + Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 I Y ++ + R + ++R K + + + + Sbjct: 64 EHEIVEVYLELNEENRQE---------ALRFTKALLEEQEAEK 97 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK IR+ +GMSQ K LG+ S+ N+E G+T P K + ++ + Sbjct: 1 MFSGQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETY 60 Query: 172 IYFGDEVI-------VPKSIKRAKGNQSSKKSKKDKKSSNP 205 E++ + + ++ + ++ +K +P Sbjct: 61 FLSEHEIVEVYLELNEENRQEALRFTKALLEEQEAEKKKSP 101 >gi|150390375|ref|YP_001320424.1| helix-turn-helix domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950237|gb|ABR48765.1| helix-turn-helix domain protein [Alkaliphilus metalliredigens QYMF] Length = 120 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 36/66 (54%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI+++R+ TQ+E+ NQ +S V+ +E G +I+ L + +++S D++ Sbjct: 2 RIRELRQELGMTQEELGRKINQTKSNVSKYETGTLEPNIQTLNLLSDIFDVSIDYLVGKS 61 Query: 95 VIDRRY 100 I ++ Sbjct: 62 NIKKQD 67 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R++ GM+Q E G+ + S +S YE G P I+ + + +D++ Sbjct: 1 MRIRELRQELGMTQEELGRKINQTKSNVSKYETGTLEPNIQTLNLLSDIFDVSIDYLV 58 >gi|258651242|ref|YP_003200398.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554467|gb|ACV77409.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 504 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 2/112 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RKA T ++A A SA++LFENG + L + Sbjct: 36 IGRRLRHLRKAAGLTLSDVAEAAGISPSALSLFENGKREAKLSLLTTLAGVLGTDLGELL 95 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG--KLLGMPNS 141 RR +R + L+ G L+G+ + Sbjct: 96 AVAPPSRRAALEIELERAQRSSGFKSLEIAAVKPGPRLQTEALESLVGLHRA 147 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + N DP IG RL+ +RK G++ + + G+ S LS +E G+ Sbjct: 16 QARSEPIRTEQNAGAPDPLTIGRRLRHLRKAAGLTLSDVAEAAGISPSALSLFENGKREA 75 Query: 154 EIKPARKIKQVTKKHLDWIY 173 ++ + V L + Sbjct: 76 KLSLLTTLAGVLGTDLGELL 95 >gi|222083000|ref|YP_002542365.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727679|gb|ACM30768.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 205 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTR++ R+ T K +A+ A+ ES ++ ENG S S+ L + W++ Sbjct: 24 LGTRLRLARQMLGMTLKALAVAADCSESLLSKIENGKASPSLPMLHRLVEVLGTNIGWMF 83 Query: 92 ---DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 DGE LDP G + R Sbjct: 84 EEADGEEGIVFRAGTRPLIGLDPLRRGEGISLER 117 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 ++ + + +G RL+ R+ GM+ S LS E G+ Sbjct: 1 MKIDIQPSQPGTDDRPSAANHGRLGTRLRLARQMLGMTLKALAVAADCSESLLSKIENGK 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQS 192 P + ++ +V ++ W++ +E + I G + Sbjct: 61 ASPSLPMLHRLVEVLGTNIGWMF--EEADGEEGIVFRAGTRP 100 >gi|307308819|ref|ZP_07588507.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306900624|gb|EFN31236.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 472 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++D+R TQ + A S +N EN S L L +++I + Sbjct: 8 IGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAELS 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 GE L+ + Sbjct: 68 SGESDRLLSALSEALSDPLFETYSPSLQEL 97 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 33/76 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R K ++Q +F + +G+ S L+ E + + + + + Sbjct: 6 LYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + G+ + ++ A Sbjct: 66 LSSGESDRLLSALSEA 81 >gi|307320352|ref|ZP_07599770.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306894074|gb|EFN24842.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 472 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++D+R TQ + A S +N EN S L L +++I + Sbjct: 8 IGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAELS 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 GE L+ + Sbjct: 68 SGESDRLLSALSEALSDPLFETYSPSLQEL 97 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 33/76 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R K ++Q +F + +G+ S L+ E + + + + + Sbjct: 6 LYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + G+ + ++ A Sbjct: 66 LSSGESDRLLSALSEA 81 >gi|255092294|ref|ZP_05321772.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255100378|ref|ZP_05329355.1| putative phage repressor [Clostridium difficile QCD-63q42] gi|255306320|ref|ZP_05350491.1| putative phage repressor [Clostridium difficile ATCC 43255] gi|255649811|ref|ZP_05396713.1| putative phage repressor [Clostridium difficile QCD-37x79] Length = 118 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 32/89 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++++RK TQ+E+ + + +E L + + +S D++ Sbjct: 2 FAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ + V ++ + + Sbjct: 62 GRTLVKENIDTVAAHRKNPHEELPEEAQE 90 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +RK+ G++Q E G+ +G+ L YE P+ K+ V +D++ Sbjct: 1 MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|221316986|ref|YP_002533130.1| prophage LambdaBa02, repressor protein [Bacillus cereus Q1] gi|221243318|gb|ACM16026.1| prophage LambdaBa02, repressor protein [Bacillus cereus Q1] Length = 112 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK +RKA TQ ++ ++ ++L EN + R + + + D++ Sbjct: 3 GERIKQLRKARGWTQDDLGEAVGFKKATISLIENNKRNREERSVTKFADVLDCTTDYLLG 62 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + D I +LK + Sbjct: 63 LSDDPKLSGEQNTRLKKDFDDIYNKLKEL 91 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G R+K +RK +G +Q + G+ +G +T+S E + E + K V D++ Sbjct: 1 MRGERIKQLRKARGWTQDDLGEAVGFKKATISLIENNKRNREERSVTKFADVLDCTTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|49482914|ref|YP_040138.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|258422580|ref|ZP_05685487.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282903282|ref|ZP_06311173.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|282905066|ref|ZP_06312924.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908042|ref|ZP_06315873.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282921517|ref|ZP_06329235.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|283957486|ref|ZP_06374939.1| DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295427234|ref|ZP_06819869.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590417|ref|ZP_06949056.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|49241043|emb|CAG39718.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257847232|gb|EEV71239.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|270055331|gb|ACZ58824.1| hypothetical protein SAP033A_008 [Staphylococcus aureus] gi|270300061|gb|ACZ68867.1| hypothetical protein SAP076A_042 [Staphylococcus aureus] gi|270300067|gb|ACZ68873.1| hypothetical protein SAP077A_006 [Staphylococcus aureus] gi|270300132|gb|ACZ68938.1| hypothetical protein SAP078A_013 [Staphylococcus aureus] gi|270300177|gb|ACZ68983.1| hypothetical protein SAP054A_013 [Staphylococcus aureus] gi|270300380|gb|ACZ69186.1| hypothetical protein SAP067A_013 [Staphylococcus aureus] gi|270300493|gb|ACZ69299.1| hypothetical protein SAP075A_013 [Staphylococcus aureus] gi|281334480|gb|ADA61564.1| hypothetical protein SAP019A_018 [Staphylococcus aureus] gi|282166762|gb|ADA80778.1| hypothetical protein SAP102A_031 [Staphylococcus aureus] gi|282315932|gb|EFB46316.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282327707|gb|EFB57989.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331891|gb|EFB61402.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596237|gb|EFC01198.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|283790937|gb|EFC29752.1| DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295128622|gb|EFG58253.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576716|gb|EFH95431.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|315192996|gb|EFU23400.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 113 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK+ R+ +Q+E+A +V+ +E+ S+ + + + + IS + + Sbjct: 2 KLAEAIKEQRELKRWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G+ ++ N + Sbjct: 62 IKGDARFKKVILEGNYRE 79 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R+ K SQ E +L + ++S +E + P + + + L+ Sbjct: 1 MKLAEAIKEQRELKRWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEH 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD K I +S++ Sbjct: 61 LIKGD-ARFKKVILEGNYRESNR 82 >gi|16265194|ref|NP_437986.1| hypothetical protein SM_b20754 [Sinorhizobium meliloti 1021] gi|15141334|emb|CAC49846.1| probable transcriptional regulator [Sinorhizobium meliloti 1021] Length = 491 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++D+R TQ + A S +N EN S L L +++I + Sbjct: 27 IGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAELS 86 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 GE L+ + Sbjct: 87 SGESDRLLSALSEALSDPLFETYSPSLQEL 116 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 36/91 (39%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + + + IG +++ +R K ++Q +F + +G+ S L+ E + Sbjct: 10 NCKIAKRAASMAIGKLYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAA 69 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 + + + + + G+ + ++ A Sbjct: 70 VLLALAEKFQIDIAELSSGESDRLLSALSEA 100 >gi|325282527|ref|YP_004255068.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] gi|324314336|gb|ADY25451.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] Length = 67 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +R + TQ E+A + VN E G S+ A L + + + I+ Sbjct: 3 NRIKVLRAEHGLTQAELADRLDVSRQTVNALETGKYDPSLPLAFRLARLFGLRIEDIFQD 62 Query: 94 EV 95 E Sbjct: 63 EE 64 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R + G++Q E L + T++ E G+ P + A ++ ++ ++ I+ Sbjct: 1 MKNRIKVLRAEHGLTQAELADRLDVSRQTVNALETGKYDPSLPLAFRLARLFGLRIEDIF 60 Query: 174 FGDE 177 +E Sbjct: 61 QDEE 64 >gi|219848414|ref|YP_002462847.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542673|gb|ACL24411.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 211 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 36/91 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R++ +R+ + + +A + + ++L ENG S S+ L ++ Sbjct: 21 DVGKRLRTLRERQRMSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPISAF 80 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + EV +R + + L + Sbjct: 81 FTPEVPQQRIVYTPAGQAIASIFPHGTLADL 111 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RL+++R+ + MS + G+ +TLS E GRT P + +++ + + Sbjct: 19 HVDVGKRLRTLRERQRMSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPIS 78 Query: 171 WIYFGD 176 + + Sbjct: 79 AFFTPE 84 >gi|116627720|ref|YP_820339.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116100997|gb|ABJ66143.1| transcriptional regulator [Streptococcus thermophilus LMD-9] Length = 229 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 9/103 (8%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K+IR+A +Q +A S+ +ENG + + L + ++ + Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 I Y ++ + R + ++R K + + + + Sbjct: 64 EHEIVEVYLELNEENRQE---------ALRFTKALLEEQEAEK 97 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK IR+ +GMSQ K LG+ S+ N+E G+T P K + ++ + Sbjct: 1 MFSGQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 E++ + Q + + K Sbjct: 61 FLSEHEIVEVYLELNEENRQEALRFTK 87 >gi|317488433|ref|ZP_07946986.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA] gi|325832081|ref|ZP_08165178.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316912477|gb|EFV34033.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA] gi|325486402|gb|EGC88854.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 254 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R + +SQ + LLG+ +++ +E ++ PE+ K+ + + LD Sbjct: 1 MSFRDNLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVRGD 65 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 26/70 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R + +Q ++A +V +E + + L + +E S D + G Sbjct: 5 DNLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDDLVRG 64 Query: 94 EVIDRRYEDV 103 ++ Sbjct: 65 DLTGCATASE 74 >gi|257892777|ref|ZP_05672430.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|257829156|gb|EEV55763.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] Length = 221 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I+ R+ N TQKE+ + ++ +EN + L + D Sbjct: 2 NIGEKIRTYRRNRNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPID 59 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 38/60 (63%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++++ R+++ ++Q E G+ +G+ + T+S++E RT+P+++ + Q +D+ Sbjct: 1 MNIGEKIRTYRRNRNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 >gi|257790856|ref|YP_003181462.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474753|gb|ACV55073.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 261 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L+ +R + +SQ + LLG+ +++ +E ++ PE+ K+ + + LD Sbjct: 1 MSFRDNLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDD 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LVRGD 65 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 27/70 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R + +Q ++A +V +E + + L + +E S D + G Sbjct: 5 DNLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDDLVRG 64 Query: 94 EVIDRRYEDV 103 ++ + Sbjct: 65 DLTGCATANE 74 >gi|298206777|ref|YP_003714956.1| transcriptional regulator [Croceibacter atlanticus HTCC2559] gi|83849409|gb|EAP87277.1| transcriptional regulator [Croceibacter atlanticus HTCC2559] Length = 240 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G RIK +RK +Q+ +A N +SA +L E+ + I + L L Y++S D Sbjct: 1 MTSIGQRIKSLRKEKKYSQQFIAEKLNISQSAYSLIESAHNNVMIGHVLTLSKLYDVSTD 60 Query: 89 WIYDGEVI 96 +I GE Sbjct: 61 FILKGETN 68 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IG R+KS+RK+K SQ + L + S S E I + ++ D Sbjct: 1 MTSIGQRIKSLRKEKKYSQQFIAEKLNISQSAYSLIESAHNNVMIGHVLTLSKLYDVSTD 60 Query: 171 WIYFGDEVIVPKSIKR 186 +I G+ ++ +I+ Sbjct: 61 FILKGETNLIHMNIEN 76 >gi|126179337|ref|YP_001047302.1| hypothetical protein Memar_1391 [Methanoculleus marisnigri JR1] gi|125862131|gb|ABN57320.1| protein of unknown function DUF955 [Methanoculleus marisnigri JR1] Length = 342 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R +Q+ +A A++ +ENG + + + ++ D+ + Sbjct: 3 IGERIKSARIGAGLSQRNLAEKMGLSAMAISKYENGEVTPRSGLLIQMSEMLGVNVDYFF 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 +D +K L Sbjct: 63 RSISVDLSEPQYRCRKPL 80 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+KS R G+SQ + +G+ +S YE G P ++ ++ ++D+ Sbjct: 1 MTIGERIKSARIGAGLSQRNLAEKMGLSAMAISKYENGEVTPRSGLLIQMSEMLGVNVDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + V S + + + KK ++ + + Sbjct: 61 FFR--SISVDLSEPQYRCRKPLKKREESQIHA 90 >gi|78222121|ref|YP_383868.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193376|gb|ABB31143.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 181 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R N+ TQ+E+A A+ + ++ EN S SI + + + +S Sbjct: 2 KIGERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQEF 61 Query: 91 YD---GEVIDRRYEDVTNKKRLDPYAIGARL 118 + GE + + D L Sbjct: 62 FSDPIGEDVVYGKDARVQPSADDAAVTVELL 92 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK +R ++Q E + +S E T P I + I V + Sbjct: 1 MKIGERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQE 60 Query: 172 IYF---GDEVIVPKSIK 185 + G++V+ K + Sbjct: 61 FFSDPIGEDVVYGKDAR 77 >gi|311071151|ref|YP_003976074.1| phage element (ICEBs1)transcriptional regulator (Xre family) protein [Bacillus atrophaeus 1942] gi|310871668|gb|ADP35143.1| phage element (ICEBs1)transcriptional regulator (Xre family) protein [Bacillus atrophaeus 1942] Length = 127 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +RK TQKE+A +S++ FE + + N +++S D++ Sbjct: 3 FGHKLKTLRKQRGLTQKELAEKLFLSQSSITRFEKDEILPTSETLSKIANYFDVSIDFLL 62 Query: 92 DGEVIDRRYEDV 103 D ++ Sbjct: 63 DRPQPPQKKNSN 74 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 45/91 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G +LK++RK +G++Q E + L + S+++ +E+ +P + KI +D+ Sbjct: 1 MSFGHKLKTLRKQRGLTQKELAEKLFLSQSSITRFEKDEILPTSETLSKIANYFDVSIDF 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + K+ K + + KD+++ Sbjct: 61 LLDRPQPPQKKNSNLEKAFNEAIEELKDEET 91 >gi|255279970|ref|ZP_05344525.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255269743|gb|EET62948.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 257 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 4/92 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G + RK TQKE+A + AV+ +E G I L ++ Sbjct: 7 EQFGRFVAQQRKKKKLTQKELAQKLYVSDKAVSKWERGSSMPDIALLTPLAEALGVTVTE 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +G+ ++ + D + LK Sbjct: 67 LLEGKEME----KTEESRMADDSHLEMLLKKA 94 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 13/104 (12%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G + RK K ++Q E + L + + +S +E+G ++P+I + + + + Sbjct: 9 FGRFVAQQRKKKKLTQKELAQKLYVSDKAVSKWERGSSMPDIALLTPLAEALGVTVTELL 68 Query: 174 FGDEVIVPKSIKRAKGN-------------QSSKKSKKDKKSSN 204 G E+ + + A + + + + ++DKK N Sbjct: 69 EGKEMEKTEESRMADDSHLEMLLKKAVTITEDTPEMRRDKKKRN 112 >gi|312865414|ref|ZP_07725641.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098932|gb|EFQ57149.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 193 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R++ R TQ++++ V+ +E ++ L YE+ + Sbjct: 2 KIGERLRQARINAGLTQEDVSKELFVTRQTVSRWEQEKNLPNLYVLQDLSKLYEVEVAYF 61 Query: 91 YDGEVIDRRYED 102 EV ++ + Sbjct: 62 LTKEVENQTEKK 73 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RL+ R + G++Q + K L + T+S +EQ + +P + + + ++ + + + Sbjct: 1 MKIGERLRQARINAGLTQEDVSKELFVTRQTVSRWEQEKNLPNLYVLQDLSKLYEVEVAY 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + + ++ K+++ N Sbjct: 61 FLTKE--VENQTEKKSQIN 77 >gi|317056543|ref|YP_004105010.1| XRE family transcriptional regulator [Ruminococcus albus 7] gi|315448812|gb|ADU22376.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 63 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++RK+ TQ E+A +N EN + ++ A+ L I + ++ Sbjct: 3 NRIKELRKSQKLTQDELANAVGVSRQTINAIENDKYNPTLELAIKLARYLRIPVEDLFIL 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 32/60 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +RK + ++Q E +G+ T++ E + P ++ A K+ + + ++ ++ Sbjct: 1 MKNRIKELRKSQKLTQDELANAVGVSRQTINAIENDKYNPTLELAIKLARYLRIPVEDLF 60 >gi|257467814|ref|ZP_05631910.1| MerR family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 183 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R + +E+A + S ++ E G S SI + ++ ++ Sbjct: 4 IGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLI 63 Query: 92 DGEVIDRRYEDVTNKKR 108 + E R E V +R Sbjct: 64 EDEEETRNMEVVKKDER 80 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 40/93 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IG R+K R ++G+S E + + S LS EQG+ P I+ +KI + Sbjct: 1 MSSIGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVS 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ +E + + + + + K + Sbjct: 61 YLIEDEEETRNMEVVKKDERKYIESIDSNTKMA 93 >gi|237795609|ref|YP_002863161.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|229263162|gb|ACQ54195.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 148 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK +Q+++A + V+ +E + A L Y +S+D++ Sbjct: 3 LGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQMVPELNKAKLLSQLYNVSYDYLI 62 Query: 92 DGEVID 97 I Sbjct: 63 SENYIS 68 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 35/65 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +L +RK G+SQ + + L + T+S +E + +PE+ A+ + Q+ D+ Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQMVPELNKAKLLSQLYNVSYDY 60 Query: 172 IYFGD 176 + + Sbjct: 61 LISEN 65 >gi|228905139|ref|ZP_04069146.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL 4222] gi|228854461|gb|EEM99112.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL 4222] Length = 145 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 44/134 (32%), Gaps = 3/134 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I ++RK +Q ++A + +E G + + +E+S D++ Sbjct: 2 LGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + E ++N + + + L + + + Sbjct: 62 ---GRTEKKELLSNMTPGLSEKEERDIAKDLEKTLEQLENSEEALMFDGEPIDEHTKEMI 118 Query: 152 IPEIKPARKIKQVT 165 ++ + ++ + Sbjct: 119 RISLENSMRMAKQL 132 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++ +RK++ +SQ + LG L+NYEQG+ P+ +KI + D++ Sbjct: 1 MLGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 E + + S K+ + K Sbjct: 61 LGRTE--KKELLSNMTPGLSEKEERDIAKD 88 >gi|166031013|ref|ZP_02233842.1| hypothetical protein DORFOR_00694 [Dorea formicigenerans ATCC 27755] gi|166029280|gb|EDR48037.1| hypothetical protein DORFOR_00694 [Dorea formicigenerans ATCC 27755] Length = 140 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 27/77 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ +R+ +N Q E + N + +E G + + + + Y I+ D + Sbjct: 10 QLTENLRILRERSNLKQDEFSRYLNISRQTYSNYERGTRTPDLELLKSIADFYHITIDEL 69 Query: 91 YDGEVIDRRYEDVTNKK 107 + + Sbjct: 70 LFCNGYKIPLYSMQPDR 86 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 1/101 (0%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + + + L+ +R+ + Q EF + L + T SNYE+G P+++ + I Sbjct: 2 EETSMANIQLTENLRILRERSNLKQDEFSRYLNISRQTYSNYERGTRTPDLELLKSIADF 61 Query: 165 TKKHLDWIYFGDEVIVP-KSIKRAKGNQSSKKSKKDKKSSN 204 +D + F + +P S++ + ++ K KKS N Sbjct: 62 YHITIDELLFCNGYKIPLYSMQPDRISEGEIPYIKCKKSDN 102 >gi|317062103|ref|ZP_07926588.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313687779|gb|EFS24614.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 184 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R + +E+A + S ++ E G S SI + ++ ++ Sbjct: 5 IGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLI 64 Query: 92 DGEVIDRRYEDVTNKKR 108 + E R E V +R Sbjct: 65 EDEEETRNMEVVKKDER 81 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 40/93 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IG R+K R ++G+S E + + S LS EQG+ P I+ +KI + Sbjct: 2 MSSIGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVS 61 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ +E + + + + + K + Sbjct: 62 YLIEDEEETRNMEVVKKDERKYIESIDSNTKMA 94 >gi|254932545|ref|ZP_05265904.1| LcmR protein [Listeria monocytogenes HPB2262] gi|12275199|emb|CAC22274.1| LcmR protein [Listeria monocytogenes] gi|293584102|gb|EFF96134.1| LcmR protein [Listeria monocytogenes HPB2262] gi|332310736|gb|EGJ23831.1| Transcriptional repressor [Listeria monocytogenes str. Scott A] Length = 68 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 33/65 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I+ IR+ N+ TQ++MA N ++ + +E G + + + + +++S D++ D Sbjct: 4 RNIRSIREDNDITQQQMAKLLNVSQNTYSQYETGKIEWTATTLIKIADYFDVSVDYLLDR 63 Query: 94 EVIDR 98 + Sbjct: 64 KKNKN 68 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++SIR+D ++Q + KLL + +T S YE G+ KI +D++ Sbjct: 1 MKYRNIRSIREDNDITQQQMAKLLNVSQNTYSQYETGKIEWTATTLIKIADYFDVSVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|323691518|ref|ZP_08105787.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum WAL-14673] gi|323504412|gb|EGB20205.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum WAL-14673] Length = 136 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G I + RK TQ E+A + AV+ +E + + L + IS D Sbjct: 3 NRTFGMLIAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLLYPDVNSLPKLAGIFGISVD 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + D D R+ P A Sbjct: 63 QLMQIKTNDGPVNDRPVANRIIPIVFKA 90 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G + RK+KGM+Q+E + +G+ + +S +E+ P++ K+ + Sbjct: 1 MRNRTFGMLIAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLLYPDVNSLPKLAGIFGIS 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDQLM 65 >gi|322388685|ref|ZP_08062284.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140474|gb|EFX35980.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 113 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K++RK + TQ E+A +S+ +E G + + + ++S D++ Sbjct: 3 FAERLKELRKQAHLTQVELAKRLGIGQSSYADWERGKKKPTQENLVKIAQILDVSIDYLV 62 Query: 92 DGEVIDRRYEDVTN 105 D Sbjct: 63 GNSEEKSDELDNIE 76 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 37/71 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RLK +RK ++Q+E K LG+ S+ +++E+G+ P + KI Q+ +D+ Sbjct: 1 MAFAERLKELRKQAHLTQVELAKRLGIGQSSYADWERGKKKPTQENLVKIAQILDVSIDY 60 Query: 172 IYFGDEVIVPK 182 + E + Sbjct: 61 LVGNSEEKSDE 71 >gi|332652945|ref|ZP_08418690.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518091|gb|EGJ47694.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 169 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK IRK+ +Q+E+A+ N + V+ +E G+ + L E + Sbjct: 2 LSENIKTIRKSKGLSQQELAVKLNVVRQTVSKWEQGLSVPDSDLLIALSEALETPVSTLL 61 Query: 92 DGEVIDRRYEDVT 104 V + + V Sbjct: 62 GENVAEAEADTVK 74 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ + + + + + Sbjct: 1 MLSENIKTIRKSKGLSQQELAVKLNVVRQTVSKWEQGLSVPDSDLLIALSEALETPVSTL 60 Query: 173 YFGD 176 + Sbjct: 61 LGEN 64 >gi|197286053|ref|YP_002151925.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227356567|ref|ZP_03840954.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194683540|emb|CAR44391.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227163323|gb|EEI48250.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 117 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ K VG RIK +R+ + T E+ + + FENG C+ + L +++ Sbjct: 20 KKISKIVGARIKMLRQQHGMTGSELGALLGVSQQHQSRFENGECNIHVDVIYLLSYIFKV 79 Query: 86 SFDWIYDG 93 ++ + Sbjct: 80 KLNYFFQD 87 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 AR+K +R+ GM+ E G LLG+ S +E G + + + K L++ + Sbjct: 28 ARIKMLRQQHGMTGSELGALLGVSQQHQSRFENGECNIHVDVIYLLSYIFKVKLNYFF 85 >gi|37524779|ref|NP_928123.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784204|emb|CAE13073.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 101 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 35/95 (36%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +++Q VG RI+ RK T ++A + ++ +E G+ ++ + + + + Sbjct: 2 KMKQDHLLVGKRIQKRRKELGMTAVKLAEKIGISQQQLSRYERGINRINLSHLVQIASIL 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 E +W + + A L Sbjct: 62 ETPINWFFLDCSYPASNNSINKLTDQYIPIAEATL 96 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K + D +G R++ RK+ GM+ ++ + +G+ LS YE+G + +I + Sbjct: 2 KMKQDHLLVGKRIQKRRKELGMTAVKLAEKIGISQQQLSRYERGINRINLSHLVQIASIL 61 Query: 166 KKHLDWIYFG 175 + ++W + Sbjct: 62 ETPINWFFLD 71 >gi|150018568|ref|YP_001310822.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905033|gb|ABR35866.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 359 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I +RK TQ+E+A+ AV+ +ENG I L S D + Sbjct: 5 NIGETILKLRKERKLTQEELALMIGISAGAVSKWENGNSMPDISILAPLARALNTSIDTL 64 Query: 91 Y 91 Sbjct: 65 L 65 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 38/81 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + +RK++ ++Q E ++G+ +S +E G ++P+I + + Sbjct: 1 MNELNIGETILKLRKERKLTQEELALMIGISAGAVSKWENGNSMPDISILAPLARALNTS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKG 189 +D + + + + + K Sbjct: 61 IDTLLSFHKELSEEEVNNIKS 81 >gi|297156604|gb|ADI06316.1| UDP-N-acetylglucosamine transferase [Streptomyces bingchenggensis BCW-1] Length = 509 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 19/180 (10%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A N +SAVN E G + S+ + + Sbjct: 2 TDDYLSRIGKLIRDARQHRGWTQAQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 I + V +RL K+ LL +TL Sbjct: 62 ---SEIVSLGYAGPMHLRVVGGRRLSGAIDVKTSKNACVAL-----LCATLLNSGRTTLR 113 Query: 145 NYEQGRTIPEIKPARKIKQVT---KKHLDWIYFGD--EVIVPKSIKRAKGNQSSKKSKKD 199 + I+ +I +V WI G E++ P + + + + + Sbjct: 114 RVAR------IEEVYRILEVLGSIGVRTRWINDGADLEIVPPAELDLDSMDTEAARRTRS 167 >gi|261758784|ref|ZP_06002493.1| transcriptional regulator [Brucella sp. F5/99] gi|261738768|gb|EEY26764.1| transcriptional regulator [Brucella sp. F5/99] Length = 340 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR TQ MA S +NL E +++ L L + Y++ D + Sbjct: 9 GPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++G++Q + LG+ S L+ E+ + ++ K+ V K LD + Sbjct: 12 IRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 >gi|229542977|ref|ZP_04432037.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229327397|gb|EEN93072.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 139 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +R A +Q E+A + ++ +E G SI+ + ++S D++ Sbjct: 16 FAARLKKVRAAQGYSQPELAKRVGVSDRNISNYETGYSFPSIKVLYRISQVLKVSIDYLL 75 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ARLK +R +G SQ E K +G+ + +SNYE G + P IK +I QV K +D++ Sbjct: 16 FAARLKKVRAAQGYSQPELAKRVGVSDRNISNYETGYSFPSIKVLYRISQVLKVSIDYLL 75 >gi|294678852|ref|YP_003579467.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477672|gb|ADE87060.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 478 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + P + +G R+K +R++ TQ +MA S + L E S++ + L Sbjct: 1 MAPRAEKLV--IGQRLKVLRQSLGLTQAQMAAELGVSASYITLIEADQRPASVKLLMRLA 58 Query: 81 NEYEISFDWI 90 Y+++ + Sbjct: 59 EVYDLNISEL 68 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK +R+ G++Q + LG+ S ++ E + +K ++ +V ++ Sbjct: 8 LVIGQRLKVLRQSLGLTQAQMAAELGVSASYITLIEADQRPASVKLLMRLAEVYDLNISE 67 Query: 172 I 172 + Sbjct: 68 L 68 >gi|282165400|ref|YP_003357785.1| putative HTH-type transcriptional regulator [Methanocella paludicola SANAE] gi|282157714|dbj|BAI62802.1| putative HTH-type transcriptional regulator [Methanocella paludicola SANAE] Length = 63 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R N TQ+++A+ +N E G S+ A L +E + + ++ Sbjct: 3 NRLKELRARFNMTQEDLAVKVGVSRQTINAIETGKYDPSLPLAFKLARCFETNIEHLFME 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R M+Q + +G+ T++ E G+ P + A K+ + + +++ ++ Sbjct: 1 MRNRLKELRARFNMTQEDLAVKVGVSRQTINAIETGKYDPSLPLAFKLARCFETNIEHLF 60 Query: 174 FGD 176 + Sbjct: 61 MEE 63 >gi|269929183|ref|YP_003321504.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269788540|gb|ACZ40682.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 367 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R+ + +G ++ +R+ T ++A + S V E G S L E Sbjct: 11 LRRSRQQIGPALRALRERRGWTLAQLAAESGVSRSQVWRLEQGQNVPSYLTLARLAKALE 70 Query: 85 ISFDWI 90 + ++ Sbjct: 71 VEINYF 76 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 28/64 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+++R+ +G + + G+ S + EQG+ +P ++ + + +++ + Sbjct: 22 LRALRERRGWTLAQLAAESGVSRSQVWRLEQGQNVPSYLTLARLAKALEVEINYFTSFES 81 Query: 178 VIVP 181 Sbjct: 82 TATE 85 >gi|229155408|ref|ZP_04283518.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] gi|228628123|gb|EEK84840.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] Length = 181 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|225569026|ref|ZP_03778051.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM 15053] gi|225161825|gb|EEG74444.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM 15053] Length = 323 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 18/141 (12%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++ +R+ TQ+++A +V+ +E+G + L L ++ Sbjct: 2 KEETKMGFAENLQFLRQKKGYTQEQIAEQLQVSRQSVSKWESGGSFPEMDKLLQLSEMFQ 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 D + G+ + E+ ++ + ++I G+ LLG+ Sbjct: 62 CGMDVLVQGDARNSYVEEHDEYEK----HMNEYSRAISFGVGLL------LLGVAV---- 107 Query: 145 NYEQGRTIPEIKPARKIKQVT 165 YE + A KI + Sbjct: 108 -YELLAG---VYTAEKICDML 124 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K L+ +R+ KG +Q + + L + ++S +E G + PE+ ++ ++ Sbjct: 1 MKEETKMGFAENLQFLRQKKGYTQEQIAEQLQVSRQSVSKWESGGSFPEMDKLLQLSEMF 60 Query: 166 KKHLDWIYFGD 176 + +D + GD Sbjct: 61 QCGMDVLVQGD 71 >gi|218902948|ref|YP_002450782.1| DNA-binding protein [Bacillus cereus AH820] gi|228926864|ref|ZP_04089931.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121381|ref|ZP_04250611.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|218538383|gb|ACK90781.1| DNA-binding protein [Bacillus cereus AH820] gi|228662070|gb|EEL17680.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|228832805|gb|EEM78375.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 181 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|20808559|ref|NP_623730.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517186|gb|AAM25334.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 123 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 31/76 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ RK NN T ++ ++ EN S + L+N +S DW+ Sbjct: 4 VGERIRYARKKNNLTIPALSKLTGLSPGNLSDLENNKSMPSSNALIKLKNALNVSIDWLL 63 Query: 92 DGEVIDRRYEDVTNKK 107 GE+ E+ Sbjct: 64 TGEMPSEVKEEEEKYS 79 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++G R++ RK ++ KL G+ LS+ E +++P K+K +D Sbjct: 1 MNSVGERIRYARKKNNLTIPALSKLTGLSPGNLSDLENNKSMPSSNALIKLKNALNVSID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 W+ G+ +P +K + S KS+ Sbjct: 61 WLLTGE---MPSEVKEEEEKYSVDKSED 85 >gi|47564876|ref|ZP_00235920.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228984110|ref|ZP_04144296.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47558249|gb|EAL16573.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228775638|gb|EEM24018.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 117 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +RK N TQ+++ + A++ FE G + + + + + D++ Sbjct: 2 IGEIIKKLRKEKNITQEQLGAAVGVSKMAISYFEKGKKAPGRETLEKIADFFNTTTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E + + I ++++ Sbjct: 62 GRSDDPELTEFESRVVTEEGNNIIKLIETL 91 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +K +RK+K ++Q + G +G+ +S +E+G+ P + KI D++ Sbjct: 1 MIGEIIKKLRKEKNITQEQLGAAVGVSKMAISYFEKGKKAPGRETLEKIADFFNTTTDYL 60 Query: 173 YFGDEVIV----PKSIKRAKGNQSSK 194 + + +GN K Sbjct: 61 LGRSDDPELTEFESRVVTEEGNNIIK 86 >gi|300214961|gb|ADJ79377.1| DNA-binding protein [Lactobacillus salivarius CECT 5713] Length = 203 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 43/139 (30%), Gaps = 10/139 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G I RK + TQ +A + AV+ +ENG L L EI + Sbjct: 3 QEKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLDLCQLLEIKVN 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + GE I + ++ L K+ R+ + L + L Sbjct: 63 ELLTGEQIVMKDYKKIAEQNLIELRNQKE-KADRRLL-TTVKILATLSCISAVVLILM-- 118 Query: 149 GRTIPEIKPARKIKQVTKK 167 KI Q Sbjct: 119 ------GTLLTKISQFLGI 131 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 48/92 (52%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + RKD +Q K LG+ + +S +E G++IP+ + Q+ + Sbjct: 1 MEQEKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLDLCQLLEIK 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ + G+++++ K A+ N +++K+K Sbjct: 61 VNELLTGEQIVMKDYKKIAEQNLIELRNQKEK 92 >gi|228907521|ref|ZP_04071378.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228852013|gb|EEM96810.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 181 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|227544982|ref|ZP_03975031.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|227185043|gb|EEI65114.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] Length = 247 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 RI ++RK T +++A + ++ +E G + L N ++++ ++ Sbjct: 22 NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLANYFDVTVYYL 78 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+ +RK+KG++ + +G+ N+T+S YE G+ P+++ +K+ + ++ Sbjct: 20 PHNRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLANYFDVTVYYL 78 >gi|319946276|ref|ZP_08020516.1| transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747658|gb|EFV99911.1| transcriptional regulator [Streptococcus australis ATCC 700641] Length = 158 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S+ I Sbjct: 2 IGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDIV 61 Query: 92 DGEV 95 E Sbjct: 62 GEEK 65 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +K++RK ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 1 MIGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60 Query: 173 YFGDEVIVP 181 ++++ P Sbjct: 61 VGEEKMLTP 69 >gi|168184062|ref|ZP_02618726.1| phosphoserine phosphatase [Clostridium botulinum Bf] gi|237794132|ref|YP_002861684.1| HTH domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182672824|gb|EDT84785.1| phosphoserine phosphatase [Clostridium botulinum Bf] gi|229261321|gb|ACQ52354.1| HTH domain protein [Clostridium botulinum Ba4 str. 657] Length = 381 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 37/98 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 W ++G I RK TQ+++A +++V+ +E+G+ I + L + IS D Sbjct: 3 WLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISMD 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + + + +L + + Sbjct: 63 ELLGYSPQLTKEDIKKIYSKLSHEFAVKPFDEVMEQCN 100 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MKWLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK+ Sbjct: 61 MDELLGYSPQLTKEDIKK 78 >gi|163758095|ref|ZP_02165183.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43] gi|162284384|gb|EDQ34667.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43] Length = 478 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR A TQ MA S +NL E +++ L L + Y++ + + Sbjct: 9 GPRIRRIRNAKGLTQTAMAEALGISPSYLNLIERNQRPLTVQLILKLSSVYKVDVEEL 66 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR KG++Q + LG+ S L+ E+ + ++ K+ V K ++ + Sbjct: 12 IRRIRNAKGLTQTAMAEALGISPSYLNLIERNQRPLTVQLILKLSSVYKVDVEEL 66 >gi|116619051|ref|YP_819422.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097898|gb|ABJ63049.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 183 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK+ R+ + TQ E+A ++ +E G I + + IS D ++ G+ Sbjct: 7 IKEKRQKMSLTQMELANKLLVSNKTISNWETGKTLPDIENIILISKYLNISLDDLFLGDE 66 Query: 96 IDRRYEDVTNKKR 108 ++R Sbjct: 67 TMVGKLRENQQER 79 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 41/80 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K R+ ++Q+E L + N T+SN+E G+T+P+I+ I + LD Sbjct: 1 MIFHNLIKEKRQKMSLTQMELANKLLVSNKTISNWETGKTLPDIENIILISKYLNISLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 ++ GDE +V K + + + Sbjct: 61 LFLGDETMVGKLRENQQERK 80 >gi|300909985|ref|ZP_07127445.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] gi|300892633|gb|EFK85993.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] Length = 234 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 RI ++RK T +++A + ++ +E G + L N ++++ ++ Sbjct: 9 NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLANYFDVTVYYL 65 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+ +RK+KG++ + +G+ N+T+S YE G+ P+++ +K+ + ++ Sbjct: 7 PHNRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLANYFDVTVYYL 65 >gi|224542166|ref|ZP_03682705.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM 15897] gi|224524934|gb|EEF94039.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM 15897] Length = 121 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K RK TQ+ +A N + ++ +E G+ + L ++S + Sbjct: 2 LSKNLKIFRKRKGLTQENVAEALNVVRQTISKWEKGISVPDADMLIKLAEILDVSVSKLI 61 Query: 92 DGEVIDRRYEDVTNKK 107 +V D + ED+ + Sbjct: 62 GSDVADEKNEDMIAVE 77 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + LK RK KG++Q + L + T+S +E+G ++P+ K+ ++ + + Sbjct: 1 MLSKNLKIFRKRKGLTQENVAEALNVVRQTISKWEKGISVPDADMLIKLAEILDVSVSKL 60 Query: 173 YFGD 176 D Sbjct: 61 IGSD 64 >gi|66391801|ref|YP_238525.1| DNA binding protein [Streptococcus phage 2972] gi|168229317|ref|YP_001686838.1| orf44 [Streptococcus phage 858] gi|56718458|gb|AAW27964.1| DNA binding protein [Streptococcus phage 2972] gi|155241712|gb|ABT18032.1| orf44 [Streptococcus phage 858] Length = 170 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK T E+A + + +E+G A L + +S ++ Sbjct: 2 NRLKELRKQKKLTIVELAEKIGVTKLTILNWEHGTREIKGSNAKKLAEYFNVSIPYLLGY 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + +T ++ +A LK Sbjct: 62 DTDNTFSDLITK---INHWADERNLKQA 86 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +RK K ++ +E + +G+ T+ N+E G + A+K+ + + ++ Sbjct: 1 MNRLKELRKQKKLTIVELAEKIGVTKLTILNWEHGTREIKGSNAKKLAEYFNVSIPYLLG 60 Query: 175 GD 176 D Sbjct: 61 YD 62 >gi|320093956|ref|ZP_08025785.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979114|gb|EFW10628.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 80 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R +Q +A ++ E+G + +I + + ++ D ++ Sbjct: 22 RMKAARAGRGLSQASLAEQVGVTRQTISAVESGDYNPTIALCVRICRALGVTLDDLF 78 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A R+K+ R +G+SQ + +G+ T+S E G P I +I + LD Sbjct: 17 MAKNLRMKAARAGRGLSQASLAEQVGVTRQTISAVESGDYNPTIALCVRICRALGVTLDD 76 Query: 172 IYFG 175 +++ Sbjct: 77 LFWE 80 >gi|313124417|ref|YP_004034676.1| hypothetical protein LDBND_1675 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280980|gb|ADQ61699.1| Hypothetical protein LDBND_1675 [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 143 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++++D+RK + +QKE+A ++ V +ENG I Y L Y++S D++ Sbjct: 10 SKLRDLRKKHGLSQKELAEKLMTTQAKVASWENGDSVPDISYIAKLTVLYDVSADYLLKD 69 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + R+ Sbjct: 70 GKQEGQAIEPGEEMDRPNTKRLGRI 94 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 11/91 (12%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + ++L+ +RK G+SQ E + L + ++++E G ++P+I K+ + D Sbjct: 5 NMMLPSKLRDLRKKHGLSQKELAEKLMTTQAKVASWENGDSVPDISYIAKLTVLYDVSAD 64 Query: 171 WIYF-----------GDEVIVPKSIKRAKGN 190 ++ G+E+ P + + + N Sbjct: 65 YLLKDGKQEGQAIEPGEEMDRPNTKRLGRIN 95 >gi|291536345|emb|CBL09457.1| Uncharacterized conserved protein, contains double-stranded beta-helix domain [Roseburia intestinalis M50/1] Length = 179 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+K++R TQ+E+A + + ++ E S SI L + + Sbjct: 2 DIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTPAEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E ++ + + ++ I Sbjct: 62 FTDEEPEQIVFEKDDYFEKISEDGNKMIEWI 92 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R G++Q E + +S E+ + P I I Q Sbjct: 1 MDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTPAE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + +E P+ I K + K S+ K Sbjct: 61 FFTDEE---PEQIVFEKDDYFEKISEDGNK 87 >gi|238061301|ref|ZP_04606010.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883112|gb|EEP71940.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 481 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 2/106 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD- 88 DVG I+D+R+ + +++A A ++ E G+ S L + +S Sbjct: 8 PDVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVSTPA 67 Query: 89 -WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 ++ G + D+ E V +DP A+ +S+ + + E Sbjct: 68 MYLRAGLLDDKDREGVLAAIAVDPDLTMAQKQSLSQIYETFRRETA 113 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G ++ +R++ +S + + G+ N LS E+G P + +++ + Sbjct: 6 DLPDVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVST 65 >gi|229084370|ref|ZP_04216650.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] gi|228698910|gb|EEL51615.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] Length = 107 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + N + D + Sbjct: 2 IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQTPVDTL 61 Query: 91 YDGEVIDRRYEDVTN----KKRLDPYAIGARLKSIRKDKGMSQIE 131 E D K+ + + + + Q + Sbjct: 62 LHDEPAAESQLDSEWTHLVKEAMSSGVSKEQFREFLEFTKWKQNQ 106 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R +G+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQTPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|186470704|ref|YP_001862022.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197013|gb|ACC74976.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 213 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 +++ ++ + T + R +G +K+ R T ++A + S V+ EN Sbjct: 1 MKSEIEPDPTTQMEDTGDGRSIESFLGKVVKEHRTNQGLTIADLAEQSGLSRSMVSKIEN 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYD 92 G STS+ + L IS ++ Sbjct: 61 GQVSTSLDSIVSLARALGISISALFK 86 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 2/104 (1%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E + T R +G +K R ++G++ + + G+ S +S E G+ Sbjct: 6 EPDPTTQMEDTGDGRSIESFLGKVVKEHRTNQGLTIADLAEQSGLSRSMVSKIENGQVST 65 Query: 154 EIKPARKIKQVTKKHLDWIYFGDE--VIVPKSIKRAKGNQSSKK 195 + + + + ++ E + +K KG + ++ Sbjct: 66 SLDSIVSLARALGISISALFKNFEHREGNAQHVKAGKGMEVVRR 109 >gi|259909794|ref|YP_002650150.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965416|emb|CAX56948.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 124 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%) Query: 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 I+ E + + +G RI +RK TQ ++A N + AV +E G I Sbjct: 1 MAAPISNEEQVFITGLGRRITALRKDAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISIL 60 Query: 77 LYLRNEYEISFDWIYDGEVIDR 98 + +S + + ++ Sbjct: 61 PAVARLLSVSLEDLLGEAPEEK 82 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 3/104 (2%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 ++N++++ +G R+ ++RKD GM+Q + + L + + +E GR +I + Sbjct: 4 PISNEEQVFITGLGRRITALRKDAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAV 63 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ L+ + + I R +G ++ S P Sbjct: 64 ARLLSVSLEDLLG---EAPEEKIARKRGPAPKWLQLIEEIDSLP 104 >gi|229815042|ref|ZP_04445379.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM 13280] gi|229809272|gb|EEP45037.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM 13280] Length = 276 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 27/158 (17%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK RK +Q ++A + V+ +E G + I+ + + + +S D + Sbjct: 3 LSEQIKLGRKELGMSQADLADAIWVSRNTVSNWERGDTTPDIQSLVLMGALFGLSLDEMV 62 Query: 92 DGEVIDRRYEDVTNKKRL---------------DPYAIGA-RLKSIRKDKGMSQIEFGKL 135 G+ +K L D L +R G + F + Sbjct: 63 KGDEQVMAQALERDKNHLLIAGETFNPGNRQAADWNHTSTLGLFELRSTGGPAHGRF-ED 121 Query: 136 LGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +S Y +I + + L I Sbjct: 122 ADVTDSHGLAY----------RLVRIATLFSRSLYHIL 149 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 44/78 (56%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K RK+ GMSQ + + + +T+SN+E+G T P+I+ + + LD Sbjct: 1 MILSEQIKLGRKELGMSQADLADAIWVSRNTVSNWERGDTTPDIQSLVLMGALFGLSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKG 189 + GDE ++ ++++R K Sbjct: 61 MVKGDEQVMAQALERDKN 78 >gi|183982165|ref|YP_001850456.1| transcriptional regulator [Mycobacterium marinum M] gi|183175491|gb|ACC40601.1| transcriptional regulator [Mycobacterium marinum M] Length = 180 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R+ T +++A A +S ++ E G + SI AL + ++ ++ E Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDES 64 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 RL P + + Sbjct: 65 AHETITVDRAHDRLGPQSGRYHV 87 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 38/74 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + A L+++R+ +G++ + + G+ S LS E+G++ P I A K+ + + ++ Sbjct: 1 MTALLRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60 Query: 174 FGDEVIVPKSIKRA 187 + ++ RA Sbjct: 61 SDESAHETITVDRA 74 >gi|162448892|ref|YP_001611259.1| hypothetical protein sce0622 [Sorangium cellulosum 'So ce 56'] gi|161159474|emb|CAN90779.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 202 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 ++ F E + +++ L TPE Q + +G I+++RK + T K+MA S ++ Sbjct: 112 VDEFREVLARVMRKKGLARTPE-EQLHRVIGDTIRNLRKDKDLTLKQMARRTGLSVSLLS 170 Query: 63 LFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 E S SI + E ++ Sbjct: 171 QIERAESSASISSLYKIAVALESRIQDLFGH 201 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 3/112 (2%) Query: 63 LFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV-TNKKRLDPYAIGARLKSI 121 E+ + S + Y++ + + D + R + + + IG ++++ Sbjct: 90 NLESAVASMKLDAVDYIKKPFNV--DEFREVLARVMRKKGLARTPEEQLHRVIGDTIRNL 147 Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RKDK ++ + + G+ S LS E+ + I KI + + ++ Sbjct: 148 RKDKDLTLKQMARRTGLSVSLLSQIERAESSASISSLYKIAVALESRIQDLF 199 >gi|119963185|ref|YP_949637.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119950044|gb|ABM08955.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 206 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 28/77 (36%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 +Y ++ +G R++ R+ T ++A A + E G + S+ Sbjct: 2 QYDALMDESTTTLSLAIGARVRQERQNRGWTLDQLAEAAGVSRRMIINMEQGAANPSVGT 61 Query: 76 ALYLRNEYEISFDWIYD 92 L + + + + + Sbjct: 62 LLRISDALGVGLPALVE 78 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIGAR++ R+++G + + + G+ + N EQG P + +I L Sbjct: 16 LAIGARVRQERQNRGWTLDQLAEAAGVSRRMIINMEQGAANPSVGTLLRISDALGVGLPA 75 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + E PK +K + + Sbjct: 76 LV---ESPRPKPVKVTRSGE 92 >gi|291558273|emb|CBL35390.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 110 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R++D+R+ +KTQ+E+A +E+G + A+ L Y +S D+I Sbjct: 5 QRLRDLREDADKTQQEIADYLGTSAQHYGKYESGKAEIPLERAVRLAKYYNVSLDYI 61 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RL+ +R+D +Q E LG YE G+ ++ A ++ + LD+ Sbjct: 1 MAHYQRLRDLREDADKTQQEIADYLGTSAQHYGKYESGKAEIPLERAVRLAKYYNVSLDY 60 Query: 172 I---------YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 I D + P I K + S K+ K + Sbjct: 61 IAGISSSRHPLTSDNSLSPIGILSDKITRLSDNEKQAVKDT 101 >gi|255655369|ref|ZP_05400778.1| putative phage repressor [Clostridium difficile QCD-23m63] Length = 118 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 33/89 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++++RK TQ+E+ + + +E L + +++S D++ Sbjct: 2 FAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ + V ++ + + Sbjct: 62 GRTLVKENIDTVAAHRKNPHEELPEEAQE 90 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +RK+ G++Q E G+ +G+ L YE P+ K+ V +D++ Sbjct: 1 MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|210632226|ref|ZP_03297243.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279] gi|210159684|gb|EEA90655.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279] Length = 222 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ + IK +RK TQ E+A + S + +E G S + L + + Sbjct: 7 KEDHMGISQNIKRLRKQAGMTQVELAEKLDVARSTITQWETGWSSPRMGMVQKLAGVFGV 66 Query: 86 -SFDWI 90 S D + Sbjct: 67 TSADML 72 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + D I +K +RK GM+Q+E + L + ST++ +E G + P + +K+ Sbjct: 1 MFVRLNKEDHMGISQNIKRLRKQAGMTQVELAEKLDVARSTITQWETGWSSPRMGMVQKL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPK 182 V + D +P Sbjct: 61 AGVFGVTSADMLAEDSEGLPS 81 >gi|30261830|ref|NP_844207.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527071|ref|YP_018420.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184664|ref|YP_027916.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|165869280|ref|ZP_02213939.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633298|ref|ZP_02391623.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167638844|ref|ZP_02397119.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686265|ref|ZP_02877487.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707323|ref|ZP_02897778.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650592|ref|ZP_02933559.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190566460|ref|ZP_03019378.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227815396|ref|YP_002815405.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229604640|ref|YP_002866215.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254683329|ref|ZP_05147190.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723912|ref|ZP_05185698.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734684|ref|ZP_05192396.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741092|ref|ZP_05198780.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755336|ref|ZP_05207370.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759873|ref|ZP_05211897.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30256058|gb|AAP25693.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502219|gb|AAT30895.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178591|gb|AAT53967.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164714720|gb|EDR20238.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167513308|gb|EDR88679.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531336|gb|EDR94014.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127822|gb|EDS96694.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669962|gb|EDT20703.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083736|gb|EDT68796.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562595|gb|EDV16562.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227006572|gb|ACP16315.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229269048|gb|ACQ50685.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 181 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEQQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEQQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|313887742|ref|ZP_07821424.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846351|gb|EFR33730.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 185 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +IK R+ N +Q+++A A++ +EN + ++ L + + + Sbjct: 6 GEKIKSKRRELNLSQEDLADKLFVTRQAISKWENDKATPTMTNLRELSEVFGVDMAYFI 64 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++KS R++ +SQ + L + +S +E + P + R++ +V + + Sbjct: 3 IMYGEKIKSKRRELNLSQEDLADKLFVTRQAISKWENDKATPTMTNLRELSEVFGVDMAY 62 Query: 172 IY 173 Sbjct: 63 FI 64 >gi|300024182|ref|YP_003756793.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526003|gb|ADJ24472.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 213 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 26/62 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG ++ +R+ + + +++A + + + E G + +I + ++S + Sbjct: 26 VGENLRHLRRKSGLSLEQLAAKSGVSRAMLGQIETGKSAPTINLLGRIAEALQVSVPSLI 85 Query: 92 DG 93 Sbjct: 86 SH 87 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R+ G+S + G+ + L E G++ P I +I + + + + Sbjct: 28 ENLRHLRRKSGLSLEQLAAKSGVSRAMLGQIETGKSAPTINLLGRIAEALQVSVPSLI 85 >gi|226947857|ref|YP_002802948.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226844191|gb|ACO86857.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 130 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +RK +Q E+ N ++ +E G + + + L + +EIS D + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELV 62 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +L S+RK KG+SQ E G L + T+S +E G T PE++ + + LD Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + + + N+ Sbjct: 61 LVMDVKAKESTKTEPLVMNR 80 >gi|226328868|ref|ZP_03804386.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198] gi|225202054|gb|EEG84408.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198] Length = 112 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ RK T ++A + + +E GM + Y + L N W + Sbjct: 21 VGKRIQKKRKELGYTGMQIAKKIGVSQQQFSRYERGMNKIDLSYLVLLANYLNTPIYWFF 80 Query: 92 DG 93 + Sbjct: 81 ED 82 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 6/97 (6%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + GE + N L +G R++ RK+ G + ++ K +G+ S YE+G Sbjct: 1 MIIGEYMMNYDFTDINVNAL----VGKRIQKKRKELGYTGMQIAKKIGVSQQQFSRYERG 56 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 ++ + + W + ++ +PKS Sbjct: 57 MNKIDLSYLVLLANYLNTPIYWFF--EDCFIPKSSSE 91 >gi|26249039|ref|NP_755079.1| putative repressor protein of prophage [Escherichia coli CFT073] gi|331651509|ref|ZP_08352529.1| repressor protein C2 [Escherichia coli M718] gi|26109446|gb|AAN81649.1|AE016765_51 Putative repressor protein of prophage [Escherichia coli CFT073] gi|331050782|gb|EGI22839.1| repressor protein C2 [Escherichia coli M718] Length = 208 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RIK +R+ +QKE+ + AV +E + + L + S D Sbjct: 1 METVGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSID 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +I G + + + + + + R Sbjct: 61 YILYGAEFEGKLVTNMRRVPVISWVQAGQFTECR 94 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K++R+ SQ E GK G+ + + +E+ P + K+ + +D+I +G Sbjct: 6 QRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSIDYILYG 65 Query: 176 DE 177 E Sbjct: 66 AE 67 >gi|326793247|ref|YP_004311068.1| hypothetical protein Clole_4198 [Clostridium lentocellum DSM 5427] gi|326544011|gb|ADZ85870.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 143 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K +RK TQ+E+AI N + ++ +E G+ + + +++S + Sbjct: 4 ENLKALRKTKGFTQEEIAIRLNVVRQTISKWEKGLSIPDADILIKIAALFDVSVSELLGS 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 ++ D + ++ ++L +K+ R Sbjct: 64 KLEDEKDINIV-AEQLSRINEQLAIKNRRAHL 94 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK++RK KG +Q E L + T+S +E+G +IP+ KI + + + Sbjct: 1 MFSENLKALRKTKGFTQEEIAIRLNVVRQTISKWEKGLSIPDADILIKIAALFDVSVSEL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|266619966|ref|ZP_06112901.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288868430|gb|EFD00729.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 113 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K++G RI D RK + TQ+ +A AN V+ E G + + + Sbjct: 1 MDDLLKEMGKRIHDRRKQLHMTQENLAELANITPQTVSTAELGQKAMRPDTIIKISAALG 60 Query: 85 ISFDWIYDGEVIDRRY 100 IS D++ G+V + Sbjct: 61 ISTDYLLLGKVTEEDK 76 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 30/79 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+ RK M+Q +L + T+S E G+ KI D++ Sbjct: 7 EMGKRIHDRRKQLHMTQENLAELANITPQTVSTAELGQKAMRPDTIIKISAALGISTDYL 66 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 G KS+ K ++ Sbjct: 67 LLGKVTEEDKSLLSPKVSE 85 >gi|228914405|ref|ZP_04078019.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845250|gb|EEM90287.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 181 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|300814822|ref|ZP_07095058.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511068|gb|EFK38332.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 367 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I RK TQ+E+A +++V+ +E G I L + IS D + Sbjct: 3 KIGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSYPDILLLPKLATFFNISVDEL 62 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + + L Sbjct: 63 IGYDPDLSSAQIQKFYIDL 81 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG + RK++G++Q E + + + +++S +E G++ P+I K+ +D Sbjct: 1 MLKIGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSYPDILLLPKLATFFNISVD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + D + I++ Sbjct: 61 ELIGYDPDLSSAQIQK 76 >gi|296163497|ref|ZP_06846243.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295886255|gb|EFG66127.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 124 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 6/110 (5%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + + K +G + R + TQ++++ ++ FE G + + L Sbjct: 5 ATQEEAFAKRIGQALARARLDADMTQEQVSEALGVNTETISRFERGHTAPPLFRLFELAE 64 Query: 82 EYEISFDWIYDG------EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 Y + + + G + + N D + + ++ + Sbjct: 65 VYGVPPETLIAGGEGRSLDPARDVTALMGNLSHGDREFVREWVAAMCERL 114 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L R D M+Q + + LG+ T+S +E+G T P + ++ +V + + G E Sbjct: 19 LARARLDADMTQEQVSEALGVNTETISRFERGHTAPPLFRLFELAEVYGVPPETLIAGGE 78 >gi|283833076|ref|ZP_06352817.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] gi|291070694|gb|EFE08803.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 191 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G RI+ R++ + ++A A + ++ E G S + L + Sbjct: 5 EDSINQRIGARIRLERESRGWSLTDLAERAGVSRAMIHKIERGESSPTATLLGRLSGAFG 64 Query: 85 ISFDWIY 91 IS + Sbjct: 65 ISMSMLI 71 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 30/73 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R+ +G S + + G+ + + E+G + P ++ + + Sbjct: 14 ARIRLERESRGWSLTDLAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSMLIAR 73 Query: 176 DEVIVPKSIKRAK 188 E+ K ++ A Sbjct: 74 AEMQEGKLLRFAD 86 >gi|227873147|ref|ZP_03991438.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227840978|gb|EEJ51317.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 300 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 43/82 (52%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + RK+ GM+Q + + +GM + ++S +E+G +P++ + + Sbjct: 1 MDLVKIGKYISEKRKNLGMTQKQLAEKIGMSDKSVSKWERGICLPDVSLYFDLCSILGIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 ++ G++++ K+++ N Sbjct: 61 INEFLAGEDIVHENIEKKSEEN 82 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I + RK TQK++A + +V+ +E G+C + L + IS + Sbjct: 5 KIGKYISEKRKNLGMTQKQLAEKIGMSDKSVSKWERGICLPDVSLYFDLCSILGISINEF 64 Query: 91 YDGEVIDRRYEDVTNKKRL-----DPYAIGARLKSI 121 GE I + +++ + D RLK I Sbjct: 65 LAGEDIVHENIEKKSEENIISVVTDSKHRQKRLKYI 100 >gi|227824109|ref|YP_002828082.1| putative transcriptional regulator with cupin 2 conserved barrel [Sinorhizobium fredii NGR234] gi|227343111|gb|ACP27329.1| putative transcriptional regulator with cupin 2 conserved barrel [Sinorhizobium fredii NGR234] Length = 197 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 36/90 (40%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + +G R++++R T E+AI + + ++ E G S + + L Sbjct: 5 IMEQAVPSLEQTIGERVREMRTVQALTLDELAIRSGVSRAMISRIERGEASPTAQLLAKL 64 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + + ++ + ++RL Sbjct: 65 CSALGTTLSALFASAAENASPVARRAEQRL 94 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 28/75 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R + ++ E G+ + +S E+G P + K+ L ++ Sbjct: 19 ERVREMRTVQALTLDELAIRSGVSRAMISRIERGEASPTAQLLAKLCSALGTTLSALFAS 78 Query: 176 DEVIVPKSIKRAKGN 190 +RA+ Sbjct: 79 AAENASPVARRAEQR 93 >gi|291287634|ref|YP_003504450.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884794|gb|ADD68494.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 191 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 34/75 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K + R+K++RKA + +Q + + +V +E G +++ +++S D Sbjct: 3 YKKIADRLKELRKALDMSQTDFGRKIGKNYHSVMRWELGRVLPPSNVIVHICESFDVSPD 62 Query: 89 WIYDGEVIDRRYEDV 103 W+ G+ D Sbjct: 63 WLKSGKGKMFLNSDP 77 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I RLK +RK MSQ +FG+ +G ++ +E GR +P I + Sbjct: 1 MQYKKIADRLKELRKALDMSQTDFGRKIGKNYHSVMRWELGRVLPPSNVIVHICESFDVS 60 Query: 169 LDWIYFGD 176 DW+ G Sbjct: 61 PDWLKSGK 68 >gi|163815521|ref|ZP_02206894.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC 27759] gi|158449158|gb|EDP26153.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC 27759] Length = 112 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 32/86 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK IRK+ TQ+++A A V E+G + S+ + S D+I Sbjct: 7 GKRIKKIRKSLKLTQEQLAEKAGISAHFVYEIEHGQKTMSLYTLTDIALALGTSTDYILF 66 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL 118 G D D I + Sbjct: 67 GRTPDISSGARDVMINDDLSHIIETV 92 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D + G R+K IRK ++Q + + G+ + E G+ + I Sbjct: 1 MDIFEAGKRIKKIRKSLKLTQEQLAEKAGISAHFVYEIEHGQKTMSLYTLTDIALALGTS 60 Query: 169 LDWIYFG 175 D+I FG Sbjct: 61 TDYILFG 67 >gi|307704502|ref|ZP_07641410.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307621915|gb|EFO00944.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 116 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +RK TQ ++A N +S +ENG + S+ A L + +S ++ Sbjct: 1 MSNRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSLENAQILSEYFGVSIPYLL 60 Query: 92 DGEVIDRRYEDVTN 105 E + Sbjct: 61 GYEENSTVNKPNAT 74 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +RK+KG++Q + K+L S YE G+T ++ A+ + + + ++ Sbjct: 1 MSNRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSLENAQILSEYFGVSIPYLL 60 Query: 174 FGDE 177 +E Sbjct: 61 GYEE 64 >gi|227519556|ref|ZP_03949605.1| phage-like protein [Enterococcus faecalis TX0104] gi|257090840|ref|ZP_05585201.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|312902475|ref|ZP_07761681.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227073005|gb|EEI10968.1| phage-like protein [Enterococcus faecalis TX0104] gi|256999652|gb|EEU86172.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|310634145|gb|EFQ17428.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579716|gb|EFU91907.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 184 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VGTR+K R TQ ++A + ENG S SI + S + Sbjct: 7 KVVGTRMKQKRLEKKMTQVDVATKSGISSKYYGSIENGKNSPSIEKLSAIAKALGCSLHY 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIG 115 + + + D KRL Sbjct: 67 LLNDRMEDTENRVAVETKRLQEIFNK 92 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 LD +G R+K R +K M+Q++ G+ + + E G+ P I+ I + Sbjct: 1 MIGLDSKVVGTRMKQKRLEKKMTQVDVATKSGISSKYYGSIENGKNSPSIEKLSAIAKAL 60 Query: 166 KKHLDWIYFG--DEVIVPKSIKRAKGNQSSKKSKKDK 200 L ++ ++ +++ + + K +DK Sbjct: 61 GCSLHYLLNDRMEDTENRVAVETKRLQEIFNKIPRDK 97 >gi|209885004|ref|YP_002288861.1| transcriptional regulator, XRE family with cupin sensor [Oligotropha carboxidovorans OM5] gi|209873200|gb|ACI92996.1| transcriptional regulator, XRE family with cupin sensor [Oligotropha carboxidovorans OM5] Length = 189 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + TR K++R+ + +E A +S ++ E G+ S + L + IS + Sbjct: 5 LATRFKELREGRRWSLREAADKTGVSKSMLSKIERGLTSPTATVLGKLAEGFGISISQLV 64 Query: 92 DGEVID 97 GE + Sbjct: 65 GGEELS 70 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K +R+ + S E G+ S LS E+G T P K+ + + + G+E+ Sbjct: 10 KELREGRRWSLREAADKTGVSKSMLSKIERGLTSPTATVLGKLAEGFGISISQLVGGEEL 69 Query: 179 IVPKSI 184 + Sbjct: 70 SGDVVV 75 >gi|153955450|ref|YP_001396215.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855863|ref|YP_002472985.1| hypothetical protein CKR_2520 [Clostridium kluyveri NBRC 12016] gi|146348308|gb|EDK34844.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569587|dbj|BAH07571.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 130 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +R N QKE+A SA +E G + + Y +S D++ Sbjct: 2 LSDRLKKLRNEKNLLQKEIAKKLKITTSAYGFYEQGKRTPDTEILNKIAEFYNVSIDYLL 61 Query: 92 DGEVIDRRYEDVTN 105 I + +TN Sbjct: 62 GRTNIRDSADKITN 75 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK +R +K + Q E K L + S YEQG+ P+ + KI + +D++ Sbjct: 1 MLSDRLKKLRNEKNLLQKEIAKKLKITTSAYGFYEQGKRTPDTEILNKIAEFYNVSIDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|46019834|emb|CAE52358.1| putative transcriptional regulator [Streptococcus thermophilus] Length = 113 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K++RK N TQ E+A + A +E G+ + + + +S D++ Sbjct: 2 EFSERLKELRKKANFTQVEVAEKLGISQPAYASWERGVKKPTQDNLVRIAQILNVSVDYL 61 Query: 91 YDGEVIDRRYEDVTN 105 D Sbjct: 62 VGNSEEKADELDNIE 76 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +RK +Q+E + LG+ +++E+G P +I Q+ +D+ Sbjct: 1 MEFSERLKELRKKANFTQVEVAEKLGISQPAYASWERGVKKPTQDNLVRIAQILNVSVDY 60 Query: 172 IYFGDEVIVPK 182 + E + Sbjct: 61 LVGNSEEKADE 71 >gi|257868168|ref|ZP_05647821.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257874559|ref|ZP_05654212.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257802282|gb|EEV31154.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808723|gb|EEV37545.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 72 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 33/69 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI+D+R+ + Q++++ N ++ + +E+G + + L + Y S D++ + Sbjct: 4 RIRDLREDKDLNQEQLSKLLNISQTTYSRYESGKIDIPTQSLIKLADFYSTSVDYLLNLT 63 Query: 95 VIDRRYEDV 103 + Y Sbjct: 64 DYKKPYPRN 72 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+DK ++Q + KLL + +T S YE G+ + K+ +D++ Sbjct: 1 MYYRIRDLREDKDLNQEQLSKLLNISQTTYSRYESGKIDIPTQSLIKLADFYSTSVDYLL 60 Query: 174 FGDEVIVP 181 + P Sbjct: 61 NLTDYKKP 68 >gi|237738616|ref|ZP_04569097.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229424099|gb|EEO39146.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 131 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 36/86 (41%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ RI +R N TQ ++A N SA+ ++E G S L + + + Sbjct: 3 LMAEIKDRIISLRNEKNLTQSQLAEELNISPSAIGMYEQGRRKPSYELLEELCDYFNVDM 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYA 113 D++ I R+++ KR Y Sbjct: 63 DYLTGRSNIKNRFQEDLKNKREKNYE 88 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 38/96 (39%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + I R+ S+R +K ++Q + + L + S + YEQGR P + ++ Sbjct: 1 MILMAEIKDRIISLRNEKNLTQSQLAEELNISPSAIGMYEQGRRKPSYELLEELCDYFNV 60 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 +D++ + + + ++ DK Sbjct: 61 DMDYLTGRSNIKNRFQEDLKNKREKNYEADLDKSDD 96 >gi|170758715|ref|YP_001786212.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169405704|gb|ACA54115.1| HTH domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 381 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A +++V+ +E+G+ I + L + IS D + Sbjct: 5 NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISVDEL 64 Query: 91 Y 91 Sbjct: 65 L 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MRGLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK+ Sbjct: 61 VDELLGYSPQLTKEDIKK 78 >gi|42780924|ref|NP_978171.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206974833|ref|ZP_03235748.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217959313|ref|YP_002337861.1| DNA-binding protein [Bacillus cereus AH187] gi|222095451|ref|YP_002529511.1| DNA-binding protein [Bacillus cereus Q1] gi|229090798|ref|ZP_04222029.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|229138526|ref|ZP_04267113.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|42736845|gb|AAS40779.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206746852|gb|EDZ58244.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066610|gb|ACJ80860.1| DNA-binding protein [Bacillus cereus AH187] gi|221239509|gb|ACM12219.1| DNA-binding protein [Bacillus cereus Q1] gi|228644934|gb|EEL01179.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|228692549|gb|EEL46277.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|324325844|gb|ADY21104.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 181 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|28377505|ref|NP_784397.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1] gi|28270337|emb|CAD63238.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1] Length = 120 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 1/86 (1%) Query: 32 VGTRIKDIRK-ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K++RK TQ+ +A+ ++ + +E G + + + + ++ D++ Sbjct: 2 FAERLKELRKREAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + D Sbjct: 62 LGKNGTPKWATKKDTIDLKDFLEANE 87 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 113 AIGARLKSIRKD-KGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +RK G++Q LGM +TL++YEQG+ P+++ KI D+ Sbjct: 1 MFAERLKELRKREAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|331002934|ref|ZP_08326447.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413227|gb|EGG92601.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon 107 str. F0167] Length = 177 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+++K +R TQ+E+A A + ++ EN + S SI L + + Sbjct: 2 EIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENDITSPSIATLLDILQCLGVEIKDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +D E + + + + +K I Sbjct: 62 FDEETETQVVFTEEDYFIKEDKELNNTIKWI 92 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG++LK +R G++Q E + +S E T P I I Q + Sbjct: 1 MEIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENDITSPSIATLLDILQCLGVEIKD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + + + K+ K Sbjct: 61 FFDEETETQVVFTEEDYFIKEDKELNNTIK 90 >gi|322830791|ref|YP_004210818.1| XRE family transcriptional regulator [Rahnella sp. Y9602] gi|321165992|gb|ADW71691.1| transcriptional regulator, XRE family [Rahnella sp. Y9602] Length = 188 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 28/68 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ +G+++K +R + + A ++ + E G S ++ + + Sbjct: 1 MQELTHHIGSQLKAVRSERGWSLSQTAEHTGVSKAMLGQIERGESSPTVATLWKIASGLN 60 Query: 85 ISFDWIYD 92 +SF + Sbjct: 61 VSFSEFLE 68 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + IG++LK++R ++G S + + G+ + L E+G + P + KI Sbjct: 6 HHIGSQLKAVRSERGWSLSQTAEHTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSE 65 Query: 172 IY 173 Sbjct: 66 FL 67 >gi|217967072|ref|YP_002352578.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336171|gb|ACK41964.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM 6724] Length = 105 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 40/91 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RI++IRK +N +++A S ++L E G+ + S++ + + + Sbjct: 2 NVGKRIREIRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAQALNLPTSYF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + K LD ++ I Sbjct: 62 FSEDNDETIETFLRTKTSLDEDERRMIIQLI 92 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ IRK M + + G+ S +S E+G P +K +I Q + Sbjct: 1 MNVGKRIREIRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAQALNLPTSY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + D ++ R K + + + Sbjct: 61 FFSEDNDETIETFLRTKTSLDEDERRM 87 >gi|94994722|ref|YP_602820.1| Cro/CI family transcriptional regulator [Streptococcus phage 10750.3] gi|94548230|gb|ABF38276.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10750.3] Length = 271 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 52/117 (44%), Gaps = 4/117 (3%) Query: 15 QEYTLIITPEIRQYW--KDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCST 71 + +I ++++ + + +G RI+ +R+ N TQ E++ + V+ +E Sbjct: 5 HGFDIIYLSKLKRRYPMEQLGDRIRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFP 64 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + L + ++ D++ + N++ + +I +L+ R++K ++ Sbjct: 65 KGKDLKKLAEIFNVTSDYLLGLTDSKLGKITIQNEQP-EIVSIYNQLEQPRQEKVLN 120 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R+ + M+Q E ++LGM +T+S +E+ P+ K +K+ ++ D++ Sbjct: 28 IRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKDLKKLAEIFNVTSDYLL 84 >gi|47566166|ref|ZP_00237194.1| SinR protein [Bacillus cereus G9241] gi|228984453|ref|ZP_04144631.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154947|ref|ZP_04283061.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342] gi|229195577|ref|ZP_04322343.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293] gi|47556719|gb|EAL15050.1| SinR protein [Bacillus cereus G9241] gi|228587826|gb|EEK45878.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293] gi|228628505|gb|EEK85218.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342] gi|228775319|gb|EEM23707.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 107 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E + D + ++ + + + Q + Sbjct: 62 LHDETTKENHLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQDQ 106 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|329725145|gb|EGG61635.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 112 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ K +G +I+ R N TQ ++ N ++ ++ +E G + + + Sbjct: 2 DKKELAKFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHIL 61 Query: 84 EISFDWIYDGEVIDRRYED 102 IS D ++ + Sbjct: 62 NISIDDLFPTRNNKKNDIT 80 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +++ R ++Q + G+ L +T+SNYE G P+ +I + +D + Sbjct: 9 FIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDL 68 Query: 173 Y 173 + Sbjct: 69 F 69 >gi|296110774|ref|YP_003621155.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832305|gb|ADG40186.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 171 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 16/103 (15%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK R+ N TQ E+A ++ +E G + LY+ IS D + + Sbjct: 7 IKTKRQELNITQSELAEKLFVSNKTISNWETGKTMPDLDNVLYIAKILRISLDKLLLEDN 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + ++ IR + M+ + + Sbjct: 67 HMIDH--------------VKHIQEIRATRKMT--WVASITNI 93 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 41/85 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K+ R++ ++Q E + L + N T+SN+E G+T+P++ I ++ + LD Sbjct: 1 MTFAQIIKTKRQELNITQSELAEKLFVSNKTISNWETGKTMPDLDNVLYIAKILRISLDK 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + D ++ + + K + Sbjct: 61 LLLEDNHMIDHVKHIQEIRATRKMT 85 >gi|317130604|ref|YP_004096886.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475552|gb|ADU32155.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 70 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + +Q E+A + E G S SI +L L ++ D ++ Sbjct: 4 NRVKELRARHGFSQTELAQRVGVTRQTIGFIEKGDFSPSIALSLRLAKHLDVRVDELFWL 63 Query: 94 EVIDRRY 100 + D Sbjct: 64 DEEDIDE 70 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+K +R G SQ E + +G+ T+ E+G P I + ++ + +D + Sbjct: 1 MLRNRVKELRARHGFSQTELAQRVGVTRQTIGFIEKGDFSPSIALSLRLAKHLDVRVDEL 60 Query: 173 YFGDEVIVPK 182 ++ DE + + Sbjct: 61 FWLDEEDIDE 70 >gi|257884151|ref|ZP_05663804.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257819989|gb|EEV47137.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 370 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + ++RK TQ+ +A +++V+ +E G + L + +++S D + Sbjct: 6 LSKNVANLRKEKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELL 65 Query: 92 DGEVI 96 Sbjct: 66 GYHPQ 70 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 41/77 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++ + ++RK+KG++Q + +G+ +++S +E G+++P++ K+ Sbjct: 1 MEELSLSKNVANLRKEKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVS 60 Query: 169 LDWIYFGDEVIVPKSIK 185 +D + + + I+ Sbjct: 61 VDELLGYHPQLTKEQIR 77 >gi|237734694|ref|ZP_04565175.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382022|gb|EEO32113.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 142 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + T + +RK TQ+E+A +V +E+G I + L Y ++ D + Sbjct: 2 LSTNLVWLRKHYQYTQEEIAQQVGVSRQSVAKWESGESLPDIDSCMALAKIYNVTIDNLI 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + D K Sbjct: 62 NHDEDDAGIVIPPKGKHF 79 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + L +RK +Q E + +G+ +++ +E G ++P+I + ++ +D + Sbjct: 1 MLSTNLVWLRKHYQYTQEEIAQQVGVSRQSVAKWESGESLPDIDSCMALAKIYNVTIDNL 60 Query: 173 YFGDEV 178 DE Sbjct: 61 INHDED 66 >gi|225571452|ref|ZP_03780448.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM 15053] gi|225159928|gb|EEG72547.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM 15053] Length = 377 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 4/145 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+IRK +Q+ +A +++ E + SI A+ + +S D I+ Sbjct: 2 NRVKEIRKERGMSQETLARYIEISRKYLSMIECQNATPSISIAMRIGGALGVSVDKIFLD 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL---GMPNSTLSNYEQGR 150 + +D + + + GK + + +YE Sbjct: 62 LSSVETIAYPKPIRYIDLFCGIGGFRYASQYAFDKLDLEGKCVFSSDIDKYAQVSYEANF 121 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFG 175 + KI + ++ I FG Sbjct: 122 GERPMGDITKI-EASEIPDFDILFG 145 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K IRK++GMSQ + + + LS E P I A +I +D I+ Sbjct: 1 MNRVKEIRKERGMSQETLARYIEISRKYLSMIECQNATPSISIAMRIGGALGVSVDKIFL 60 Query: 175 G----DEVIVPKSIK 185 + + PK I+ Sbjct: 61 DLSSVETIAYPKPIR 75 >gi|168177975|ref|ZP_02612639.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182671147|gb|EDT83121.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 130 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +RK +Q E+ N ++ +E G + + + L + +EIS D + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELV 62 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +L S+RK KG+SQ E G L + T+S +E G T PE++ + + LD Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + + + N+ Sbjct: 61 LVMDVKAKESTKTEPLVMNR 80 >gi|126669228|ref|ZP_01740140.1| probable transcriptional regulator [Marinobacter sp. ELB17] gi|126626309|gb|EAZ96991.1| probable transcriptional regulator [Marinobacter sp. ELB17] Length = 237 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G R+K++R +Q ++ A+ ++A+ E+ S AL L +S Sbjct: 5 EVSMALGQRLKEVRVQRGMSQAKLGALADLTQAAIGALESRDSKHS-SMALQLARALHVS 63 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYA 113 DW+ GE + D YA Sbjct: 64 VDWLVTGEGPKSVPDADGECGDTDLYA 90 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N + A+G RLK +R +GMSQ + G L + + + E + A ++ + Sbjct: 1 NLQNEVSMALGQRLKEVRVQRGMSQAKLGALADLTQAAIGALESRDSKHS-SMALQLARA 59 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGN 190 +DW+ G+ PKS+ A G Sbjct: 60 LHVSVDWLVTGE---GPKSVPDADGE 82 >gi|160936523|ref|ZP_02083890.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC BAA-613] gi|158440314|gb|EDP18059.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC BAA-613] Length = 177 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+++K++R TQ+E+A A + ++ E + S SI + + + Sbjct: 2 EIGSKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ + + +K I Sbjct: 62 FNETPDEQVVFGKQDYFEKIDTDLNNEIKWI 92 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG++LK +R KG++Q E + +S E+ T P I I Q + Sbjct: 1 MEIGSKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|328953267|ref|YP_004370601.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453591|gb|AEB09420.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans DSM 11109] Length = 180 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K +R+AN+ TQ+E+A A + ++ E S SI + + +S Sbjct: 2 KIGEKLKRLRQANSLTQEELANRAYLTKGFISQLERDQTSPSIATLKDILDVLGVSLADF 61 Query: 91 YDGEVIDRRYEDVT 104 + DR + Sbjct: 62 FRDLPQDRVVYPQS 75 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK +R+ ++Q E + +S E+ +T P I + I V L Sbjct: 1 MKIGEKLKRLRQANSLTQEELANRAYLTKGFISQLERDQTSPSIATLKDILDVLGVSLAD 60 Query: 172 IYFG---DEVIVPKSIKRAKGNQSS 193 + D V+ P+S + N ++ Sbjct: 61 FFRDLPQDRVVYPQSARITTSNSTT 85 >gi|317057355|ref|YP_004105822.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449624|gb|ADU23188.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 210 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 35/95 (36%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ + G K +R TQKE+A N + S ++ E +I + +S Sbjct: 10 EFCNNYGENYKRLRTDKGLTQKELAKALNIVHSTISDIEKSKNPPTIEQLQAYHKYFGVS 69 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++++ + + A RL+ I Sbjct: 70 YEYLLGETKAQSPDIQMICEYTGLSEAAVKRLRHI 104 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + G K +R DKG++Q E K L + +ST+S+ E+ + P I+ + Sbjct: 3 NKPQPNFEFCNNYGENYKRLRTDKGLTQKELAKALNIVHSTISDIEKSKNPPTIEQLQAY 62 Query: 162 KQVTKKHLDWIYFGDEVIVP 181 + +++ + P Sbjct: 63 HKYFGVSYEYLLGETKAQSP 82 >gi|291563729|emb|CBL42545.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 116 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ IR+ + TQK++A S++ E+G S+ + + S ++ Sbjct: 13 IGQRIRKIREEKSMTQKKLAEKVMVSPSSITRLESGQTMVSVFTIIKIAEVLNTSISFLL 72 Query: 92 DGEVIDRRYEDV 103 G+ D D+ Sbjct: 73 SGDEDDLNKSDI 84 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 41/72 (56%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG R++ IR++K M+Q + + + + S+++ E G+T+ + KI +V + + Sbjct: 11 IAIGQRIRKIREEKSMTQKKLAEKVMVSPSSITRLESGQTMVSVFTIIKIAEVLNTSISF 70 Query: 172 IYFGDEVIVPKS 183 + GDE + KS Sbjct: 71 LLSGDEDDLNKS 82 >gi|256377098|ref|YP_003100758.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921401|gb|ACU36912.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 188 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + + V R++ +R A + ++A A S ++ ENG ++ + L Sbjct: 1 MTQDEGELDSLVRKRVRALRLAQGWSLDDLATRAKLSPSTLSRIENGQRRLALDQLVTLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + S D + + D V + Sbjct: 61 KALDTSLDQLVETAAEDVVTSPVHDPSHQ 89 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++++R +G S + + STLS E G+ + + + LD + Sbjct: 13 RKRVRALRLAQGWSLDDLATRAKLSPSTLSRIENGQRRLALDQLVTLAKALDTSLDQLV 71 >gi|254487954|ref|ZP_05101159.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214044823|gb|EEB85461.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 183 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 4/95 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ IR+ +Q+E+A A ++L E S S+ L + IS Sbjct: 2 DIGHRLRTIREERGLSQRELAAKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAEF 61 Query: 91 Y----DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + D E Y + L+ + Sbjct: 62 FSPLEDAETPKVFYRQSEFIEISPSSEGQVSLRQL 96 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RL++IR+++G+SQ E G+ N T+S E+ +T P + + + + Sbjct: 1 MDIGHRLRTIREERGLSQRELAAKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAE 60 Query: 172 IYFG-DEVIVPKSIKR 186 + ++ PK R Sbjct: 61 FFSPLEDAETPKVFYR 76 >gi|167769359|ref|ZP_02441412.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM 17241] gi|167668327|gb|EDS12457.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM 17241] Length = 205 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ R+K +RK +Q+ +A + AV +E + + + +S D Sbjct: 5 YRMFSERLKALRKECGISQRALAQRLGVSQQAVAKWEAASSTPGPNALATIADVLGVSSD 64 Query: 89 WIYDGE 94 ++ E Sbjct: 65 YLLGRE 70 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK++RK+ G+SQ + LG+ ++ +E + P I V D Sbjct: 5 YRMFSERLKALRKECGISQRALAQRLGVSQQAVAKWEAASSTPGPNALATIADVLGVSSD 64 Query: 171 WIYFGDEVIVPKSIKRAK 188 ++ + + A+ Sbjct: 65 YLLGRERDFQDGAQDTAR 82 >gi|291551242|emb|CBL27504.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 255 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I ++R +Q E+A AV+ +ENG + L ++S + + Sbjct: 7 ILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVLDVSINTLL 62 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +R KGMSQ E + + + +S +E G T+P + + + +V ++ Sbjct: 1 MDTKQVILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVLDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|228935113|ref|ZP_04097940.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824478|gb|EEM70283.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 145 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I ++RK +Q ++A + +E G + + +E+S D++ Sbjct: 2 LGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYLL 61 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++ +RK++ +SQ + LG L+NYEQG+ P+ +KI + D++ Sbjct: 1 MLGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 E + + S K+ + K Sbjct: 61 LGRTE--KKELLSNVTPGLSEKEERDIAKD 88 >gi|229020917|ref|ZP_04177610.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273] gi|229022840|ref|ZP_04179361.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272] gi|228738451|gb|EEL88926.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272] gi|228740379|gb|EEL90684.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273] Length = 107 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQ 129 E + D + + K R+ +Q Sbjct: 62 LHDETTTESHLDSEWTQLVKDAMSSGVSKEQFREFLEFTQ 101 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGDEVIV 180 + + Sbjct: 61 LLHDETTTE 69 >gi|229146819|ref|ZP_04275184.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24] gi|296504729|ref|YP_003666429.1| transcriptional activator PlcR [Bacillus thuringiensis BMB171] gi|228636647|gb|EEK93112.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24] gi|296325781|gb|ADH08709.1| transcriptional activator plcR [Bacillus thuringiensis BMB171] Length = 289 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I+ IRK +Q E+ G +S ++ E+G+ SI L + N E+ +++ + Sbjct: 7 GKAIRRIRKIRGLSQSELGDGIG-GQSFISRIEHGLVLPSIDTLLIIANRLEVPLEYLLE 65 Query: 93 GEVIDRRYEDVTNKKRLDPYAIG 115 + KK L Sbjct: 66 SFRTENFQHITNKKKELRYLVGQ 88 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + G ++ IRK +G+SQ E G +G S +S E G +P I I + Sbjct: 1 MNIASHGKAIRRIRKIRGLSQSELGDGIG-GQSFISRIEHGLVLPSIDTLLIIANRLEVP 59 Query: 169 LDWIY 173 L+++ Sbjct: 60 LEYLL 64 >gi|223985502|ref|ZP_03635559.1| hypothetical protein HOLDEFILI_02865 [Holdemania filiformis DSM 12042] gi|223962519|gb|EEF66974.1| hypothetical protein HOLDEFILI_02865 [Holdemania filiformis DSM 12042] Length = 254 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 8/116 (6%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G + D R+ TQK++A + AV+ +E G+ I + L ++S Sbjct: 7 QQFGAFVADQRRQKQMTQKDLAQKLMISDKAVSKWERGLNMPDITLLVPLAQALDVSVAE 66 Query: 90 IY------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG--MSQIEFGKLLG 137 + E + D KK + +++ R K + + F LG Sbjct: 67 LLECRRISQSEPMSAHQVDKLVKKAITMSEEDPQMRKRRSWKNGLLLLLCFAISLG 122 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 39/89 (43%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 LD GA + R+ K M+Q + + L + + +S +E+G +P+I + Q Sbjct: 3 ELDKQQFGAFVADQRRQKQMTQKDLAQKLMISDKAVSKWERGLNMPDITLLVPLAQALDV 62 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 + + + + + + ++ KK+ Sbjct: 63 SVAELLECRRISQSEPMSAHQVDKLVKKA 91 >gi|171910469|ref|ZP_02925939.1| Transcriptional regulator, XRE family protein [Verrucomicrobium spinosum DSM 4136] Length = 198 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G R+K +R N + + +A + S ++ E + ++ L + + Sbjct: 14 AEAISRHLGARVKQLRSDRNWSLEALAGASGVSRSMLSEIEREQANPTLAVTLRIAQAFG 73 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYA--IGARLKSI 121 +S + + + + + R Y R++++ Sbjct: 74 MSLSELIETPGVSSSITVIRHHDRAFHYRSDDHCRIRTL 112 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 AR+K +R D+ S G+ S LS E+ + P + +I Q L + Sbjct: 23 ARVKQLRSDRNWSLEALAGASGVSRSMLSEIEREQANPTLAVTLRIAQAFGMSLSELI 80 >gi|83859650|ref|ZP_00953170.1| probable transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83852009|gb|EAP89863.1| probable transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 66 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +R D+G SQ L + T+ + E G+ P + A +I +V ++ I+ Sbjct: 1 MKNAIKELRADRGWSQAALADKLDVSRQTVISIENGKYDPSLPLAFRIARVFGLPIETIF 60 Query: 174 FGD 176 + Sbjct: 61 DDE 63 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK++R +Q +A + V ENG S+ A + + + + I+D E Sbjct: 5 IKELRADRGWSQAALADKLDVSRQTVISIENGKYDPSLPLAFRIARVFGLPIETIFDDEN 64 >gi|77412497|ref|ZP_00788797.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] gi|77161448|gb|EAO72459.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] Length = 358 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I R TQ+ ++ + ++ ++ +EN I Y + + N ++IS D + Sbjct: 2 LGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAXPDIDYLILMANLFDISLDDLV 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 + + K L A Sbjct: 62 GYQKTLSDDQRNQLIKDLKIKAN 84 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G + R GM+Q L + +T+S +E + P+I + + LD + Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAXPDIDYLILMANLFDISLDDL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|295107201|emb|CBL04744.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 148 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++R+ TQ+++A AV+ +E G + I + E ++ + + Sbjct: 9 ELRRERGLTQEQLAKRLYITRQAVSRWETGETTPGIDMTKLIARELDVPITELLE 63 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ L +R+++G++Q + K L + +S +E G T P I + I + + Sbjct: 1 MALKDILPELRRERGLTQEQLAKRLYITRQAVSRWETGETTPGIDMTKLIARELDVPITE 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|325679169|ref|ZP_08158760.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109098|gb|EGC03323.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 373 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 5/97 (5%) Query: 37 KDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 K R+ TQ++ A + AV+ +ENG S I + + +S + + + Sbjct: 10 KKFRRERELTQEQAAEAFSVSTQAVSRWENGQTSPDITLLPIIAEYFGVSIETLL---GV 66 Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 D +++ ++ + +KS R + + G Sbjct: 67 DSEKRKALHEQYMNDFETA--IKSGRVNDCIEIARAG 101 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 30/76 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + K R+++ ++Q + + + +S +E G+T P+I I + ++ Sbjct: 2 NISFSEVFKKFRRERELTQEQAAEAFSVSTQAVSRWENGQTSPDITLLPIIAEYFGVSIE 61 Query: 171 WIYFGDEVIVPKSIKR 186 + D ++ Sbjct: 62 TLLGVDSEKRKALHEQ 77 >gi|283479888|emb|CAY75804.1| HTH-type transcriptional regulator dicA; Repressor protein of division inhibition gene dicA [Erwinia pyrifoliae DSM 12163] Length = 137 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 32/84 (38%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 I+ E + + +G RI +RK TQ ++A N + AV +E G I Sbjct: 12 TTMAAPISNEEQVFITGLGRRITALRKDAGMTQTQVAQALNVSQQAVQAWEAGRRRIQIS 71 Query: 75 YALYLRNEYEISFDWIYDGEVIDR 98 + +S + + ++ Sbjct: 72 ILPAVARLLSVSLEDLLGEAPEEK 95 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 3/104 (2%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 ++N++++ +G R+ ++RKD GM+Q + + L + + +E GR +I + Sbjct: 17 PISNEEQVFITGLGRRITALRKDAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAV 76 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ L+ + + I R +G ++ S P Sbjct: 77 ARLLSVSLEDLLG---EAPEEKIARKRGPAPKWLQLIEEIDSLP 117 >gi|239814884|ref|YP_002943794.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801461|gb|ACS18528.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 70 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++++RK + +Q+E A + V+ E G+ + S+ L I + ++ Sbjct: 8 FGKRLRELRKERDLSQEEFAAHCGLDRTYVSGMERGVRNPSLAVIETLAGALGIRVEELF 67 Query: 92 DG 93 G Sbjct: 68 RG 69 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G RL+ +RK++ +SQ EF G+ + +S E+G P + + ++ ++ Sbjct: 8 FGKRLRELRKERDLSQEEFAAHCGLDRTYVSGMERGVRNPSLAVIETLAGALGIRVEELF 67 Query: 174 FG 175 G Sbjct: 68 RG 69 >gi|226324530|ref|ZP_03800048.1| hypothetical protein COPCOM_02314 [Coprococcus comes ATCC 27758] gi|225206978|gb|EEG89332.1| hypothetical protein COPCOM_02314 [Coprococcus comes ATCC 27758] Length = 121 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E K+ GTR++ R TQ +A N E+ ++ ENG +TS L Sbjct: 2 KERYSMEKNFGTRVRQARHKAGLTQAALAEKLNLDETTISRIENGSQATSFATMLNFSEA 61 Query: 83 YEISFDWIYDGEVIDRRYEDVT-NKKRLDPYAI 114 ++ FD++ + D + N + LD Sbjct: 62 LDVKFDYLICDYLDDSIHSKDPINAEILDMITP 94 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 20/56 (35%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R G++Q + L + +T+S E G + D++ Sbjct: 15 VRQARHKAGLTQAALAEKLNLDETTISRIENGSQATSFATMLNFSEALDVKFDYLI 70 >gi|329930359|ref|ZP_08283948.1| methyltransferase domain protein [Paenibacillus sp. HGF5] gi|328935085|gb|EGG31571.1| methyltransferase domain protein [Paenibacillus sp. HGF5] Length = 272 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I RK TQ+ +A AV+ +E G I L ++S D ++ Sbjct: 5 LAKNINRYRKEQRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSIDKLF 64 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + + RK++ ++Q LG+ +S +E G+T+P+I ++ ++ +D + Sbjct: 4 MLAKNINRYRKEQRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSIDKL 63 Query: 173 YFGDEVIVPKSIKRAKGNQSS 193 + P SI + Sbjct: 64 FGYSSTGKPISIYEEEYKTPE 84 >gi|196044996|ref|ZP_03112229.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225863689|ref|YP_002749067.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184021|ref|ZP_04311235.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|196023998|gb|EDX62672.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225789365|gb|ACO29582.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228599460|gb|EEK57066.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] Length = 181 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|104774634|ref|YP_619614.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423715|emb|CAI98696.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 119 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 35/78 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++D+R+ +Q+E+A+ + ++ +E G ++ + N + +S + I Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVSRNSIL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 G ++ + L Sbjct: 66 AGLPVEMLEQADRRVVDL 83 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG L+ +R+ +GMSQ E LG+ T+SN+E GR +P +K KI + Sbjct: 1 MEKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60 Query: 169 LDWIYFG 175 + I G Sbjct: 61 RNSILAG 67 >gi|49477369|ref|YP_035961.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328925|gb|AAT59571.1| transcriptional regulator, MerR family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 181 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|15922405|ref|NP_378074.1| transcriptional regulator [Sulfolobus tokodaii str. 7] gi|15623194|dbj|BAB67183.1| 515aa long hypothetical transcriptional regulator [Sulfolobus tokodaii str. 7] Length = 515 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI +IR+ + ++A A +S + ENG S +I + N ++F + Sbjct: 5 IGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGVTFGELI 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 +++ + + +K Sbjct: 65 TYDIVVKDEGSEVRLIERNNNIEVYLMK 92 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y IG R+ IR+ KG+S + K+ G+ STL E G+ P I I Sbjct: 3 YPIGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGVTFGE 62 Query: 172 IYFGDEVIVPKSIK 185 + D V+ + + Sbjct: 63 LITYDIVVKDEGSE 76 >gi|331091802|ref|ZP_08340634.1| hypothetical protein HMPREF9477_01277 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402701|gb|EGG82268.1| hypothetical protein HMPREF9477_01277 [Lachnospiraceae bacterium 2_1_46FAA] Length = 106 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G +++ IR + N TQ+ +A A+ S ++ EN S+ + + N + D Sbjct: 6 FERIGEKLRIIRLSKNLTQEYIANVADVNTSHISNIENNRVKVSLSTLVQICNALNTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 ++ E D Sbjct: 66 YVLSEEYNDASSAIEQEIIH 85 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L+ IG +L+ IR K ++Q + + S +SN E R + +I Sbjct: 1 MANLNFERIGEKLRIIRLSKNLTQEYIANVADVNTSHISNIENNRVKVSLSTLVQICNAL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKR 186 +D++ + +I++ Sbjct: 61 NTTVDYVLSEEYNDASSAIEQ 81 >gi|295106591|emb|CBL04134.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Gordonibacter pamelaeae 7-10-1-b] Length = 215 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ IK +R + TQ E+ A AV+ +ENG + + + + IS + Sbjct: 2 ELGSNIKRLRVEHCLTQGELGKIAGVSPMAVSQWENGRAVPRMGAIQRMADYFGISKSSL 61 Query: 91 YD 92 D Sbjct: 62 ID 63 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G+ +K +R + ++Q E GK+ G+ +S +E GR +P + +++ Sbjct: 1 MELGSNIKRLRVEHCLTQGELGKIAGVSPMAVSQWENGRAVPRMGAIQRMADYFGISKSS 60 Query: 172 IY 173 + Sbjct: 61 LI 62 >gi|238026932|ref|YP_002911163.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237876126|gb|ACR28459.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 189 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K +RK + +++A A +S ++ E G+ + S+ A+ L + ++ + Sbjct: 5 RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQLFSAD 64 Query: 95 VIDRRYEDVTNKKRLDP 111 ++ V +RL Sbjct: 65 GDEQAITVVRADERLRM 81 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK G+S + + G+ S LS E+G + P + A ++ Q + ++ D Sbjct: 6 LKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQLFSADG 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKS 202 ++ RA ++ D +S Sbjct: 66 DEQAITVVRADERLRMSRAPDDAQS 90 >gi|157150934|ref|YP_001450194.1| Cro/CI family transcriptional regulator putative [Streptococcus gordonii str. Challis substr. CH1] gi|262282528|ref|ZP_06060296.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|157075728|gb|ABV10411.1| transcriptional regulator, Cro/CI family, putative [Streptococcus gordonii str. Challis substr. CH1] gi|262261819|gb|EEY80517.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 136 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I +RK N +Q+++A + +E G + Y+ L + +++S D + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADYFDVSLDELV 61 Query: 92 DGEVI 96 E Sbjct: 62 HLESN 66 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 36/76 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I + +RK + +SQ + + +G+ T++ +E G ++P++ + ++ LD + Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADYFDVSLDEL 60 Query: 173 YFGDEVIVPKSIKRAK 188 + ++ + K Sbjct: 61 VHLESNLLTTPSIKGK 76 >gi|295705639|ref|YP_003598714.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294803298|gb|ADF40364.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 66 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK++RK+ +Q E+A +N EN S+ A L E + D ++ Sbjct: 4 NRIKELRKSKKMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAEELGATVDELF 61 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+K +RK K MSQ E K+ G+ T++ E + P + A ++ + +D + Sbjct: 1 MVENRIKELRKSKKMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAEELGATVDEL 60 Query: 173 YFG 175 + Sbjct: 61 FLF 63 >gi|322421967|ref|YP_004201190.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320128354|gb|ADW15914.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 305 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 3/74 (4%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI--RYALYLRNEYEISFDWI 90 G RI+ IR+ TQ +A ++ +EN SI A L + E++ + I Sbjct: 20 GIRIRTIRETKKLTQLYVANVVGVTTDTISRWENNRY-PSIKRDNAQKLADALEVTLEEI 78 Query: 91 YDGEVIDRRYEDVT 104 E + Sbjct: 79 LQPEPPETPEAAQE 92 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 3/82 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK--PARKIKQVTKKHLDWIYFG 175 +++IR+ K ++Q+ ++G+ T+S +E R P IK A+K+ + L+ I Sbjct: 23 IRTIRETKKLTQLYVANVVGVTTDTISRWENNRY-PSIKRDNAQKLADALEVTLEEILQP 81 Query: 176 DEVIVPKSIKRAKGNQSSKKSK 197 + P++ + S+KSK Sbjct: 82 EPPETPEAAQELPSPAPSRKSK 103 >gi|257067633|ref|YP_003153888.1| transcriptional regulator [Brachybacterium faecium DSM 4810] gi|256558451|gb|ACU84298.1| transcriptional regulator [Brachybacterium faecium DSM 4810] Length = 186 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 29/73 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +R A + E+A A+ +S ++ ENG ++ + L + D + + Sbjct: 14 QRLRALRLAQGLSLAELAARAHLSQSTLSRIENGQRRLALDQLVNLARALDTGLDELVEE 73 Query: 94 EVIDRRYEDVTNK 106 + + Sbjct: 74 QEERVVSNAEVDH 86 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+++R +G+S E + STLS E G+ + + + LD + Sbjct: 13 RQRLRALRLAQGLSLAELAARAHLSQSTLSRIENGQRRLALDQLVNLARALDTGLDELVE 72 Query: 175 GDEVIVPKSIKRAKGNQSSK 194 E V + + G S + Sbjct: 73 EQEERVVSNAEVDHGPDSLR 92 >gi|255505295|ref|ZP_05345266.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255268648|gb|EET61853.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 85 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+++R+ + TQ +MA N + + +EN + + L + +++S D++ + Sbjct: 12 KRIRELREDRDLTQAKMAHTLNITQRTYSRYENADSMMPLDILVKLADFHDVSTDYLLER 71 Query: 94 EVIDRRYEDVTNKK 107 I +RY + Sbjct: 72 TDIKKRYPREKEHE 85 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 31/73 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ D R++ +R+D+ ++Q + L + T S YE ++ + K+ Sbjct: 2 QRSQDIMKQYKRIRELREDRDLTQAKMAHTLNITQRTYSRYENADSMMPLDILVKLADFH 61 Query: 166 KKHLDWIYFGDEV 178 D++ ++ Sbjct: 62 DVSTDYLLERTDI 74 >gi|75760672|ref|ZP_00740699.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491853|gb|EAO55042.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 9 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 68 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + + Q + Sbjct: 69 LHDETTKATNLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQHQ 113 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLD 170 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 7 NMIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVD 66 Query: 171 WIYFGD 176 + + Sbjct: 67 TLLHDE 72 >gi|313889294|ref|ZP_07822945.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122342|gb|EFR45430.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 367 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 30/84 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I RK TQ+E+A +++V+ +E G I L + IS D + Sbjct: 3 KIGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDEL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAI 114 + + L+ Sbjct: 63 IGYDPDLSSVQIQKFYIDLENSVP 86 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG + RK++G++Q E + + + +++S +E G++ P+I K+ +D Sbjct: 1 MLKIGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + D + I++ Sbjct: 61 ELIGYDPDLSSVQIQK 76 >gi|210622958|ref|ZP_03293463.1| hypothetical protein CLOHIR_01411 [Clostridium hiranonis DSM 13275] gi|210153924|gb|EEA84930.1| hypothetical protein CLOHIR_01411 [Clostridium hiranonis DSM 13275] Length = 141 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R+K +R+ TQKE+A + ++ +E L Y++ D++ Sbjct: 4 LGSRLKALRQEKGLTQKEVAKLIGTTDVSIGRYEMDARVPKADILNSLAKLYDVEIDYLL 63 Query: 92 DGEVIDRRYEDVTNKKRL 109 G+ + + +KK + Sbjct: 64 TGKEETEQPLNDRDKKDI 81 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G+RLK++R++KG++Q E KL+G + ++ YE +P+ + ++ +D Sbjct: 1 MVTLGSRLKALRQEKGLTQKEVAKLIGTTDVSIGRYEMDARVPKADILNSLAKLYDVEID 60 Query: 171 WIYFG-DEVIVPKSIKRAKGNQSSKKSKKD 199 ++ G +E P + + K + K D Sbjct: 61 YLLTGKEETEQPLNDRDKKDIEKDLKKIMD 90 >gi|50123201|ref|YP_052368.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|50123210|ref|YP_052377.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49613727|emb|CAG77178.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49613736|emb|CAG77187.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 132 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 29/68 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++ +R+A N +Q +A N +E G+ + + + + + ++S D + Sbjct: 16 FAERLRLLREARNLSQVRLAELLGVDPRVYNRWEKGVSAPHLETVVNIADVLQVSMDELV 75 Query: 92 DGEVIDRR 99 + + Sbjct: 76 GRKSVSDE 83 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A RL+ +R+ + +SQ+ +LLG+ + +E+G + P ++ I V + Sbjct: 11 MDMSAFAERLRLLREARNLSQVRLAELLGVDPRVYNRWEKGVSAPHLETVVNIADVLQVS 70 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + V ++ Sbjct: 71 MDELVGRKSVSDEVKVRN 88 >gi|108803433|ref|YP_643370.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764676|gb|ABG03558.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 134 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ +Q E+A + + ++ E+G S L + + +Y Sbjct: 1 MGPKLRQLRRQMGWSQHELARRSGVDRATISAIESGKRDPSGSTMRKLADALGVPVAELY 60 Query: 92 D 92 Sbjct: 61 K 61 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ G SQ E + G+ +T+S E G+ P RK+ + +Y Sbjct: 5 LRQLRRQMGWSQHELARRSGVDRATISAIESGKRDPSGSTMRKLADALGVPVAELYKE 62 >gi|163761537|ref|ZP_02168609.1| hypothetical protein HPDFL43_21337 [Hoeflea phototrophica DFL-43] gi|162281251|gb|EDQ31550.1| hypothetical protein HPDFL43_21337 [Hoeflea phototrophica DFL-43] Length = 216 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 18/142 (12%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P + +G ++ RK T +++ ++ ENG S S+ Sbjct: 16 QDPHAVREPRENNLERAIGHEVRAYRKKLGITVTDLSAATGVSIGMLSKIENGNISPSLT 75 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 L + + G R V + G++ G Sbjct: 76 TLQSLSRALGVPVTAFFKGFEEPRNATFVKAGE------------------GINAERRGT 117 Query: 135 LLGMPNSTLSNYEQGRTIPEIK 156 G S L + + + ++ Sbjct: 118 RAGHQYSLLGHIDNNTSSVTVE 139 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG +++ RK G++ + G+ LS E G P + + + + + Sbjct: 32 AIGHEVRAYRKKLGITVTDLSAATGVSIGMLSKIENGNISPSLTTLQSLSRALGVPVTAF 91 Query: 173 YFG-DEVIVPKSIKRAKGNQSSKKSKK 198 + G +E +K +G + ++ + Sbjct: 92 FKGFEEPRNATFVKAGEGINAERRGTR 118 >gi|261392144|emb|CAX49650.1| putative HTH-type transcriptional regulator [Neisseria meningitidis 8013] Length = 117 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 30/67 (44%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G +I+ RK + +++A N + ++ +E G+ +I + + + E Sbjct: 8 EADRLIGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFLETP 67 Query: 87 FDWIYDG 93 W + Sbjct: 68 IAWFFQD 74 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ RK+ G S + + + + +S YE+G I I + + W + Sbjct: 15 EKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFLETPIAWFF-- 72 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + +PK + A +++ + + S NP Sbjct: 73 -QDCLPKPLTVACTPENTPEQQW--HSLNP 99 >gi|154501020|ref|ZP_02039058.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC 29799] gi|150270044|gb|EDM97563.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC 29799] Length = 114 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Q ++++G RI ++RK +Q +A A ++ E GM S+ L + + Sbjct: 2 REQDYRNIGVRIHNLRKLRGLSQAALAERAELSTPYISHIERGMKLLSLPALLRIAEALD 61 Query: 85 ISFDWIYDGEVID 97 I + + Sbjct: 62 IPPGTLLNDPNTP 74 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 32/82 (39%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + D IG R+ ++RK +G+SQ + + +S+ E+G + + +I + Sbjct: 1 MREQDYRNIGVRIHNLRKLRGLSQAALAERAELSTPYISHIERGMKLLSLPALLRIAEAL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRA 187 + ++ A Sbjct: 61 DIPPGTLLNDPNTPGNSHLEFA 82 >gi|126698959|ref|YP_001087856.1| putative phage repressor [Clostridium difficile 630] gi|254974905|ref|ZP_05271377.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255314032|ref|ZP_05355615.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255516712|ref|ZP_05384388.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|260682969|ref|YP_003214254.1| putative phage repressor [Clostridium difficile CD196] gi|260686567|ref|YP_003217700.1| putative phage repressor [Clostridium difficile R20291] gi|306519912|ref|ZP_07406259.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|115250396|emb|CAJ68218.1| Transcriptional regulator, Phage-type [Clostridium difficile] gi|260209132|emb|CBA62325.1| putative phage repressor [Clostridium difficile CD196] gi|260212583|emb|CBE03577.1| putative phage repressor [Clostridium difficile R20291] Length = 106 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 32/89 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++++RK TQ+E+ + + +E L + + +S D++ Sbjct: 2 FAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ + V ++ + + Sbjct: 62 GRTLVKENIDTVAAHRKNPHEELPEEAQE 90 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +RK+ G++Q E G+ +G+ L YE P+ K+ V +D++ Sbjct: 1 MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|167761576|ref|ZP_02433703.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC 35704] gi|167660719|gb|EDS04849.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC 35704] Length = 476 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G I RK+ N +Q+++A AV+ +E + S S + L +S + Sbjct: 5 RMSLGKNIASRRKSQNFSQEDIATLVGVSRQAVSKWEKDLSSPSTENIIRLAEILRVSVE 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + G + + L Sbjct: 65 ELTGGRPAAAGRDREDRSVYRVSDSRYLWL 94 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 33/69 (47%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + ++G + S RK + SQ + L+G+ +S +E+ + P + ++ ++ + Sbjct: 1 MEVSRMSLGKNIASRRKSQNFSQEDIATLVGVSRQAVSKWEKDLSSPSTENIIRLAEILR 60 Query: 167 KHLDWIYFG 175 ++ + G Sbjct: 61 VSVEELTGG 69 >gi|269838403|ref|YP_003320631.1| hypothetical protein Sthe_2392 [Sphaerobacter thermophilus DSM 20745] gi|269787666|gb|ACZ39809.1| protein of unknown function DUF955 [Sphaerobacter thermophilus DSM 20745] Length = 406 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 15/154 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R+ TQ+E A + ++ +EN + + + L Y + + Sbjct: 7 LGARLRAAREWAGLTQEEAASALGVTHALISYWENDRRTPGLGHLTRLAEIYGTTVTNLL 66 Query: 92 -DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL--------GMPNST 142 + + L A +++ +R+ ++ LL G Sbjct: 67 DPAHEEPAGPQPALLFRDLRDLAPQTQVR-LRQWIA-FLDDWADLLDECGDVLPGPGQPP 124 Query: 143 LSNYEQGRTIPEIKPARKIK----QVTKKHLDWI 172 + +++ R I +++ A + + LD I Sbjct: 125 VKAWQRARPITDVQRAPSLAVDARKYYGLGLDAI 158 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ARL++ R+ G++Q E LG+ ++ +S +E R P + ++ ++ + + Sbjct: 9 ARLRAAREWAGLTQEEAASALGVTHALISYWENDRRTPGLGHLTRLAEIYGTTVTNLL 66 >gi|251779168|ref|ZP_04822088.1| DNA-biding phage protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083483|gb|EES49373.1| DNA-biding phage protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 80 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K+IR+ +Q+++A N + ++ ENG S +IR + N EI ++ Sbjct: 8 LKNIRENKGISQRQLAKKLNISQGYISSIENGKKSPTIRMLYRIANALEICPHYLLP 64 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 LK+IR++KG+SQ + K L + +S+ E G+ P I+ +I + Sbjct: 1 MNNPKITLKNIRENKGISQRQLAKKLNISQGYISSIENGKKSPTIRMLYRIANALEICPH 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|166032973|ref|ZP_02235802.1| hypothetical protein DORFOR_02694 [Dorea formicigenerans ATCC 27755] gi|166027330|gb|EDR46087.1| hypothetical protein DORFOR_02694 [Dorea formicigenerans ATCC 27755] Length = 190 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 3/104 (2%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 N++ + A+ +K IR++K +Q + L + T+ +E G P++ Sbjct: 27 MVSLYDMNEREVRSMALNDNIKKIREEKKYTQQQLADKLYVSRQTVCRWENGSRCPDLIT 86 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 A+K+ LD + +++ I+ G + K+ +K Sbjct: 87 AKKLAMELGVTLDELISDEDIT---DIQSKYGIWKFDRVKEREK 127 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + IK IR+ TQ+++A V +ENG + A L E Sbjct: 35 EREVRSMALNDNIKKIREEKKYTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLAMEL 94 Query: 84 EISFDWIYDGEVIDRRYED 102 ++ D + E I Sbjct: 95 GVTLDELISDEDITDIQSK 113 >gi|162454793|ref|YP_001617160.1| putative transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161165375|emb|CAN96680.1| putative transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 357 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 24/64 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG ++ +R + + +A + + ++ E G + +I + + F + Sbjct: 177 VGANLRRLRTKRGLSLERLAKASGVSRAMLSQIELGQSTPTINVLWKIARALGVPFSALI 236 Query: 92 DGEV 95 + Sbjct: 237 SDQS 240 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A L+ +R +G+S K G+ + LS E G++ P I KI + + Sbjct: 179 ANLRRLRTKRGLSLERLAKASGVSRAMLSQIELGQSTPTINVLWKIARALGVPFSALISD 238 Query: 176 DEVIVPKSIKRAK 188 + I A+ Sbjct: 239 QSLGGTSLILAAR 251 >gi|111027101|ref|YP_709079.1| repressor protein [Rhodococcus jostii RHA1] gi|110825640|gb|ABH00921.1| possible repressor protein, helix-turn-helix family [Rhodococcus jostii RHA1] Length = 143 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 18/139 (12%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ R++ +Q+E+A A + +E G S + + +S + Sbjct: 7 DQLEKARRSAGVSQRELARLARLNADTIRRWELGDSSPQVDLLARVTAAIGVSISDLVKV 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 +R D R +G++Q + G G+ + + E+G Sbjct: 67 PESERYPGD------------------WRILRGLTQPQLGAAAGVTTQIVGSVERGEISL 108 Query: 154 EIKPARKIKQVTKKHLDWI 172 ARK+ + + Sbjct: 109 SDNVARKLSAALRIPESEL 127 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 7/73 (9%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 L+ PE +Y D R TQ ++ A V E G S S A Sbjct: 62 DLVKVPESERYPGD-------WRILRGLTQPQLGAAAGVTTQIVGSVERGEISLSDNVAR 114 Query: 78 YLRNEYEISFDWI 90 L I + Sbjct: 115 KLSAALRIPESEL 127 Score = 39.2 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +L+ R+ G+SQ E +L + T+ +E G + P++ ++ + + Sbjct: 6 PDQLEKARRSAGVSQRELARLARLNADTIRRWELGDSSPQVDLLARVTAAIGVSISDLVK 65 Query: 175 GDEV 178 E Sbjct: 66 VPES 69 >gi|148262951|ref|YP_001229657.1| cupin 2 domain-containing protein [Geobacter uraniireducens Rf4] gi|146396451|gb|ABQ25084.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 196 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 I PEIR+ +G + + +R+ T +E+A + ++ EN + I L + Sbjct: 4 IKPEIREL--KLGEKARKLRQERRLTLQELAELTGLSKPLLSQIENDQVTPPIATLLKIA 61 Query: 81 NEYEISFDWIYDGEVIDRRY 100 ++ + ++ E +++ Sbjct: 62 KGLKVGIHYFFEEEGDRQKF 81 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + +R+++ ++ E +L G+ LS E + P I KI + K + + + + Sbjct: 18 RKLRQERRLTLQELAELTGLSKPLLSQIENDQVTPPIATLLKIAKGLKVGIHYFFEEEGD 77 Query: 179 IVPKSIKRAKGNQSSKKS 196 + R +SK+ Sbjct: 78 RQKFVLTRGGSGPASKRR 95 >gi|325830857|ref|ZP_08164241.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325487264|gb|EGC89707.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 197 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ GT I+ +R+ TQ+++A + AV+ +E G + L + Sbjct: 4 RNTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDVELLPGLSERLGTPVET 63 Query: 90 IYDG 93 + DG Sbjct: 64 LLDG 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 36/67 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G ++++R+++G++Q + LG+ + +S +E+G P+++ + + Sbjct: 1 MDARNTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDVELLPGLSERLGTP 60 Query: 169 LDWIYFG 175 ++ + G Sbjct: 61 VETLLDG 67 >gi|325662739|ref|ZP_08151333.1| hypothetical protein HMPREF0490_02073 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470976|gb|EGC74204.1| hypothetical protein HMPREF0490_02073 [Lachnospiraceae bacterium 4_1_37FAA] Length = 242 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK R N+ TQ+E A V+ +EN ++ + + N Y +S D + Sbjct: 3 IAEMIKKTRVDNHLTQEEYANKFGVSRQTVSSWENEKSIPDLQLIITICNTYNLSLDSLL 62 Query: 92 DGE 94 + + Sbjct: 63 NAD 65 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 37/84 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +K R D ++Q E+ G+ T+S++E ++IP+++ I LD Sbjct: 1 MTIAEMIKKTRVDNHLTQEEYANKFGVSRQTVSSWENEKSIPDLQLIITICNTYNLSLDS 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D V K K + SKK Sbjct: 61 LLNADHNYVDKIDMTKKIVRISKK 84 >gi|295396255|ref|ZP_06806433.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] gi|294970909|gb|EFG46806.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] Length = 502 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ R T +++ + S ++ FE+G SI L + S + Sbjct: 36 IGRKIRHFRTEQGLTLEQLGERVGRAASQISAFESGNREPSIAVLTALAKALDTSAAELL 95 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D + +R +R + + L Sbjct: 96 DPTPVSQRQALELEAERAQRSPLYSSL 122 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +IG +++ R ++G++ + G+ +G S +S +E G P I + + Sbjct: 32 DALSIGRKIRHFRTEQGLTLEQLGERVGRAASQISAFESGNREPSIAVLTALAKALDTSA 91 Query: 170 DWIY 173 + Sbjct: 92 AELL 95 >gi|257886598|ref|ZP_05666251.1| predicted protein [Enterococcus faecium 1,141,733] gi|257822652|gb|EEV49584.1| predicted protein [Enterococcus faecium 1,141,733] Length = 149 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 28/85 (32%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +RK + TQ+E+A V+ +ENG L Y + Sbjct: 7 KKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHENVYCLAKLYGQTLSIFLPD 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + +R+ L Sbjct: 67 LPEAPMKAEEISSERIQLIRFFICL 91 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +LK +RK+ G +Q E K L + T+SN+E GR+ P+ + + ++ + L I Sbjct: 4 FFPKKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHENVYCLAKLYGQTLS-I 62 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 + D P + + Sbjct: 63 FLPDLPEAPMKAEEISSER 81 >gi|256618071|ref|ZP_05474917.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256597598|gb|EEU16774.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|295114477|emb|CBL33114.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] Length = 167 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 30/69 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +I+ R N +Q E++ ++ +ENG + + + N +++ + Sbjct: 4 GEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLEVFLS 63 Query: 93 GEVIDRRYE 101 ++ + + + Sbjct: 64 EDISEIKKQ 72 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +++ R +K +SQ+E +L + T+SN+E GRT PE++ I L+ Sbjct: 1 MNTGEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLEV 60 Query: 172 IYFGDEVIVPKS 183 D + K Sbjct: 61 FLSEDISEIKKQ 72 >gi|22537400|ref|NP_688251.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76798004|ref|ZP_00780262.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|22534275|gb|AAN00124.1|AE014249_5 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76586627|gb|EAO63127.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|157419703|gb|ABV55392.1| transcriptional regulator, Cro/CI family protein [Streptococcus dysgalactiae subsp. equisimilis] gi|323127163|gb|ADX24460.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 74 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R+ N+ TQK +A + SA + E G S + L N Y +S D++ Sbjct: 3 RRLRDLREDNDFTQKYVAEKLSFTHSAYSKIERGERILSADVIIKLSNLYNVSTDYLLGQ 62 Query: 94 EVIDRRYEDVTN 105 R ++ Sbjct: 63 TDFPHRIKNNLK 74 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+D +Q + L +S S E+G I K+ + D++ Sbjct: 1 MYRRLRDLREDNDFTQKYVAEKLSFTHSAYSKIERGERILSADVIIKLSNLYNVSTDYLL 60 >gi|301053367|ref|YP_003791578.1| MerR family transcriptional regulator [Bacillus anthracis CI] gi|300375536|gb|ADK04440.1| transcriptional regulator, MerR family [Bacillus cereus biovar anthracis str. CI] Length = 181 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|308235770|ref|ZP_07666507.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114942|ref|YP_003986163.1| XRE family transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946436|gb|ADP39140.1| XRE family transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 210 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 4/107 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++ R TQ+E+A +AV +E G + + + ++ D + Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDHLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL---KSIRKDKGMSQIEFGKL 135 D + + L+ Y + A+L K I+ + + + E+ Sbjct: 63 D-KDNAIDLSIIKKPIDLEKYGLNAKLGVRKKIKMKEQIIRDEYADA 108 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 36/71 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++++ R + G++Q E +++ + + ++ +E GR +P++ + I +D + Sbjct: 5 EKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDHLLDK 64 Query: 176 DEVIVPKSIKR 186 D I IK+ Sbjct: 65 DNAIDLSIIKK 75 >gi|261368944|ref|ZP_05981827.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282568951|gb|EFB74486.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 108 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 W +G I+ R + Q+++A + + + E G + S+ + + N EIS D Sbjct: 3 WASIGRNIRQYRLERDLRQEDLAEAVGVSTNYMGMVERGEKTPSLETLVAILNALEISAD 62 Query: 89 WIYDG 93 + Sbjct: 63 MVLTD 67 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +IG ++ R ++ + Q + + +G+ + + E+G P ++ I + Sbjct: 1 MDWASIGRNIRQYRLERDLRQEDLAEAVGVSTNYMGMVERGEKTPSLETLVAILNALEIS 60 Query: 169 LDWIYFG 175 D + Sbjct: 61 ADMVLTD 67 >gi|187923443|ref|YP_001895085.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714637|gb|ACD15861.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 191 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ ++T E+A A + ++ E G + SI + + ++ + Sbjct: 15 IGSKIRALRQRLSRTLDEVATTAGISKPFLSQVERGHATPSITSLVGIARALGVTVQYFV 74 Query: 92 DGEVIDRRYEDVTNKKRL 109 D D+ + K Sbjct: 75 DTPTEDKSVRRGSELKYF 92 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 N K +IG++++++R+ + E G+ LS E+G P I I Sbjct: 4 PLNNKAHVAISIGSKIRALRQRLSRTLDEVATTAGISKPFLSQVERGHATPSITSLVGIA 63 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKR 186 + + + D KS++R Sbjct: 64 RALGVTVQYFV--DTPTEDKSVRR 85 >gi|88801551|ref|ZP_01117079.1| transcriptional regulator, PBSX family protein [Polaribacter irgensii 23-P] gi|88782209|gb|EAR13386.1| transcriptional regulator, PBSX family protein [Polaribacter irgensii 23-P] Length = 64 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I+ R + TQ ++A + EN + S+ A+ + +E++ ++++D E Sbjct: 5 IRVERARHRLTQGDLAEKVGVSRQTIYAIENNKFNPSVTLAIKMARYFEVTVEYLFDSEE 64 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 30/64 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ R ++Q + + +G+ T+ E + P + A K+ + + +++++ Sbjct: 1 MKNLIRVERARHRLTQGDLAEKVGVSRQTIYAIENNKFNPSVTLAIKMARYFEVTVEYLF 60 Query: 174 FGDE 177 +E Sbjct: 61 DSEE 64 >gi|332157761|ref|YP_004423040.1| Predicted transcription regulator, containing DNA-binding HTH domain protein [Pyrococcus sp. NA2] gi|331033224|gb|AEC51036.1| Predicted transcription regulator, containing DNA-binding HTH domain protein [Pyrococcus sp. NA2] Length = 66 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R+ TQ+E+A + E G S+R A + + + + I+ Sbjct: 3 NRLRELREMYGLTQEELAKKLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFGVKIEDIFIY 62 Query: 94 EVID 97 + + Sbjct: 63 DDEE 66 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+ G++Q E K LG+ T+ E+G+ P ++ A KI + ++ I+ Sbjct: 1 MKNRLRELREMYGLTQEELAKKLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFGVKIEDIF 60 Query: 174 FGDEV 178 D+ Sbjct: 61 IYDDE 65 >gi|317472844|ref|ZP_07932154.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp. 3_2_56FAA] gi|316899686|gb|EFV21690.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp. 3_2_56FAA] Length = 302 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++KD+R+ +Q++MA AV +E G I + + ++IS D + + E Sbjct: 5 KLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISIDELLESE 64 Query: 95 VIDRRYED 102 R+ D Sbjct: 65 ERSRQKGD 72 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +LK +R+ MSQ + + L + ++ +E G +P+I+ + I + +D + Sbjct: 1 MFSTKLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISIDEL 60 Query: 173 YFGDEVIVPK 182 +E K Sbjct: 61 LESEERSRQK 70 >gi|300691862|ref|YP_003752857.1| hypothetical protein RPSI07_2218 [Ralstonia solanacearum PSI07] gi|299078922|emb|CBM10198.1| conserved protein of unknown function [Ralstonia solanacearum PSI07] Length = 182 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T + +A +S ++ E G+ SI A+ L + + ++ Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +RKD+G + + G+ S LS E+G ++P I A K+ + + ++ Sbjct: 5 LKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60 >gi|300704470|ref|YP_003746073.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299072134|emb|CBJ43466.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 182 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T + +A +S ++ E G+ SI A+ L + + ++ Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +RKD+G + + G+ S LS E+G ++P I A K+ + + ++ Sbjct: 5 LKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60 >gi|269955724|ref|YP_003325513.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304405|gb|ACZ29955.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 505 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 2/107 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R T ++A + S V+L ENG +I + + + Sbjct: 29 IGRRIRHLRTERGMTLDDLAAAIGKAPSQVSLLENGKREPTIARLQAVARALGAGVEDLL 88 Query: 92 DGEVIDRRYEDVTNKKRLD--PYAIGARLKSIRKDKGMSQIEFGKLL 136 D RR +R P ++ +R + + +L Sbjct: 89 DPRPPSRRDALELELERTQRGPLFDALGIRPVRVGRSLPTDALEAIL 135 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + D IG R++ +R ++GM+ + +G S +S E G+ P Sbjct: 10 DRRPPGPALPLAEEPDALTIGRRIRHLRTERGMTLDDLAAAIGKAPSQVSLLENGKREPT 69 Query: 155 IKPARKIKQVTKKHLDWIY 173 I + + + ++ + Sbjct: 70 IARLQAVARALGAGVEDLL 88 >gi|207722896|ref|YP_002253330.1| hypothetical protein RSMK05553 [Ralstonia solanacearum MolK2] gi|206588080|emb|CAQ18660.1| hypothetical protein RSMK05553 [Ralstonia solanacearum MolK2] Length = 182 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T + +A +S ++ E G+ SI A+ L + + ++ Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +RKD+G + + G+ S LS E+G ++P I A K+ + + ++ Sbjct: 5 LKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60 >gi|291545337|emb|CBL18445.1| transcriptional regulator, XRE family [Ruminococcus sp. SR1/5] Length = 71 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R + +Q+E++ + + + + +E G + I + L N Y+ S D++ Sbjct: 4 QRIQDLRTDADLSQRELSEILHISQRSYSHYETGSRNIPIEMLIRLANYYDTSIDYLVGR 63 Query: 94 EVIDR 98 + Sbjct: 64 TDRKK 68 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R D +SQ E ++L + + S+YE G I+ ++ +D++ Sbjct: 1 MKFQRIQDLRTDADLSQRELSEILHISQRSYSHYETGSRNIPIEMLIRLANYYDTSIDYL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|226313174|ref|YP_002773068.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226096122|dbj|BAH44564.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 120 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG RI+ +RKANN TQ++ A N V+ +E S S+ + D+ Sbjct: 5 ETVGQRIRKLRKANNWTQEQFANRVNVSPQKVSNWERDYTSPSVEDIARIAQICNTESDY 64 Query: 90 IYDGEVIDRRYEDVTNK 106 I G ++K Sbjct: 65 ILTGRTSPLTSSAKSDK 81 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK +Q +F + + +SN+E+ T P ++ +I Q+ D+I G Sbjct: 9 QRIRKLRKANNWTQEQFANRVNVSPQKVSNWERDYTSPSVEDIARIAQICNTESDYILTG 68 Query: 176 DEVIVPKSIKRAK---------GNQSSKKSKKDKKSS 203 + S K K + K S++DKK + Sbjct: 69 RTSPLTSSAKSDKHLSEFENLFFFELDKLSEEDKKKA 105 >gi|164688731|ref|ZP_02212759.1| hypothetical protein CLOBAR_02378 [Clostridium bartlettii DSM 16795] gi|164602207|gb|EDQ95672.1| hypothetical protein CLOBAR_02378 [Clostridium bartlettii DSM 16795] Length = 115 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E K +G +K+ R TQ+ ++ AV+ +ENG S L L Sbjct: 41 VRHEKAIIRKSLGEVLKENRIRCKMTQEFVSESIGVSRQAVSKWENGASDPSTSNLLALA 100 Query: 81 NEYEISFDWIYD 92 Y IS + + Sbjct: 101 KLYGISAEDLLK 112 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 + DV ++K + ++G LK R M+Q + +G+ +S +E G + P Sbjct: 37 KSTDVRHEKAIIRKSLGEVLKENRIRCKMTQEFVSESIGVSRQAVSKWENGASDPSTSNL 96 Query: 159 RKIKQVTKKHLDWIYFGDE 177 + ++ + + E Sbjct: 97 LALAKLYGISAEDLLKEVE 115 >gi|90417956|ref|ZP_01225868.1| conserved hypothetical protein with helix turn helix motif [Aurantimonas manganoxydans SI85-9A1] gi|90337628|gb|EAS51279.1| conserved hypothetical protein with helix turn helix motif [Aurantimonas manganoxydans SI85-9A1] Length = 193 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 35/68 (51%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +DVG +++ +R +N + K++A ES ++ E G + ++ L + I+ + Sbjct: 10 QDVGRKLRHMRNLHNLSLKQLAATVGCSESMLSKVETGRVNPTLTMLRKLVDALGINIAF 69 Query: 90 IYDGEVID 97 +++ + D Sbjct: 70 LFEPQDED 77 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R +S + +G S LS E GR P + RK+ ++ +++ + Sbjct: 16 LRHMRNLHNLSLKQLAATVGCSESMLSKVETGRVNPTLTMLRKLVDALGINIAFLFEPQD 75 Query: 178 V 178 Sbjct: 76 E 76 >gi|77406024|ref|ZP_00783101.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] gi|77175360|gb|EAO78152.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] Length = 75 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R+ N+ TQK +A + SA + E G S + L N Y +S D++ Sbjct: 4 RRLRDLREDNDFTQKYVAEKLSFTHSAYSKIERGERILSADVIIKLSNLYNVSTDYLLGQ 63 Query: 94 EVIDRRYEDVTN 105 R ++ Sbjct: 64 TDFPHRIKNNLK 75 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL+ +R+D +Q + L +S S E+G I K+ + D++ Sbjct: 1 MMYRRLRDLREDNDFTQKYVAEKLSFTHSAYSKIERGERILSADVIIKLSNLYNVSTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|260222943|emb|CBA33015.1| hypothetical protein Csp_B16920 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 100 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 33/77 (42%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 T +T Y + VG RIK +R+ +Q+ ++ + ++ E+G + ++ + Sbjct: 24 TASVTKNKINYKRIVGQRIKGLRQEAELSQEILSERCGIYRTYLSRIESGSANPTLLVLV 83 Query: 78 YLRNEYEISFDWIYDGE 94 L + + + + Sbjct: 84 ALADSLGVQPAELLSND 100 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 29/86 (33%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + VT K +G R+K +R++ +SQ + G+ + LS E G Sbjct: 15 VCKKTHSSDTASVTKNKINYKRIVGQRIKGLRQEAELSQEILSERCGIYRTYLSRIESGS 74 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGD 176 P + + + D Sbjct: 75 ANPTLLVLVALADSLGVQPAELLSND 100 >gi|256790076|ref|ZP_05528507.1| transcriptional regulator [Streptomyces lividans TK24] Length = 197 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T E V RI+ +R A + +E+A A +S+++ ENG ++ + L Sbjct: 1 MTQEDGDLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKR 108 + + D + + D + + Sbjct: 61 RALDTTLDQLVETADEDVITSPMIDSAH 88 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + S+LS E GR + + + LD + Sbjct: 13 RKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQLVE 72 Query: 175 --GDEVIVPKSIKRAKG 189 ++VI I A G Sbjct: 73 TADEDVITSPMIDSAHG 89 >gi|209559928|ref|YP_002286400.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] gi|209541129|gb|ACI61705.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] Length = 195 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I RK +Q+E+A +++ +EN + L L +++S + + Sbjct: 2 EIGQQIIRYRKQQALSQEELAEKVYVSRQSISHWENDKTYPVLASLLLLSQIFQVSLNQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G++ +Y K+ Sbjct: 62 IKGDIEKMKYTITQVDKK 79 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 40/86 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ RK + +SQ E + + + ++S++E +T P + + Q+ + L+ Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISHWENDKTYPVLASLLLLSQIFQVSLNQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + GD + +I + + +K Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTK 86 >gi|167758894|ref|ZP_02431021.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC 35704] gi|167663634|gb|EDS07764.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC 35704] Length = 108 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RIK+ R N TQ+ +A N S + E G ++ + + N ++ D Sbjct: 3 YIALGRRIKEERLKLNMTQERLAEEVNLSTSYIGQIERGERKLTLDSLINITNCLGVTVD 62 Query: 89 WIYD 92 ++ Sbjct: 63 YLLQ 66 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A+G R+K R M+Q + + + S + E+G + I Sbjct: 1 MDYIALGRRIKEERLKLNMTQERLAEEVNLSTSYIGQIERGERKLTLDSLINITNCLGVT 60 Query: 169 LDWIY 173 +D++ Sbjct: 61 VDYLL 65 >gi|157377494|ref|YP_001476094.1| transcriptional regulator protein-like protein [Shewanella sediminis HAW-EB3] gi|157319868|gb|ABV38966.1| transcriptional regulator protein-like protein [Shewanella sediminis HAW-EB3] Length = 78 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N TQ ++A + +N E G S+ A + +E S + I+D Sbjct: 3 NRLKVLRAERNWTQADLAEKLDVSRQTINAIEKGKYDPSLPLAFKVARLFEASIETIFDD 62 Query: 94 EVIDRRYED 102 EV Sbjct: 63 EVEVDSEPS 71 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 36/69 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + + L + T++ E+G+ P + A K+ ++ + ++ I+ Sbjct: 1 MKNRLKVLRAERNWTQADLAEKLDVSRQTINAIEKGKYDPSLPLAFKVARLFEASIETIF 60 Query: 174 FGDEVIVPK 182 + + + Sbjct: 61 DDEVEVDSE 69 >gi|313886599|ref|ZP_07820312.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923955|gb|EFR34751.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] Length = 363 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + T E+++ + G RI+ R T +E+A + ++ E G + + L Sbjct: 1 METKELKRMERSTGERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIAL 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKK 107 ++ D+ + + K Sbjct: 61 SEALDLPIDYFVYQDTPIIESVNFRKIK 88 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R +GM+ E +G+ ++ +SN E+G + + +D+ + Sbjct: 15 ERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPIDYFVYQ 74 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 D I+ R SSK+ KK Sbjct: 75 DTPIIESVNFRKIKAFSSKEDKK 97 >gi|229167238|ref|ZP_04294979.1| Transcriptional regulator, XRE [Bacillus cereus AH621] gi|228616276|gb|EEK73360.1| Transcriptional regulator, XRE [Bacillus cereus AH621] Length = 205 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 25 LGQTVLSYRKKNNMTIREFADYAGISPSLISQIERGHANPSLNVLELIAKALNVPLFTLF 84 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + S Sbjct: 85 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNGYA---NTTES 141 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 S+ ++ I K +V L+ ++ GD V +P ++K N+S + + Sbjct: 142 HYSHEDKEE----IAVVMK-GEVY-VELEGNEYFLEEGDVVRIPPNVKHRFLNKSDEMN 194 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 1/106 (0%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + Y+ + Y +G + S RK M+ EF G+ S +S E+G P Sbjct: 5 KGQKMYYDGRKEVVTMIHYRLGQTVLSYRKKNNMTIREFADYAGISPSLISQIERGHANP 64 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + I + L ++ D + I + K + + D Sbjct: 65 SLNVLELIAKALNVPLFTLFIND-IDTDSLISKKKDRKKVYRENND 109 >gi|225575392|ref|ZP_03784002.1| hypothetical protein RUMHYD_03482 [Blautia hydrogenotrophica DSM 10507] gi|225037337|gb|EEG47583.1| hypothetical protein RUMHYD_03482 [Blautia hydrogenotrophica DSM 10507] Length = 167 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK + +Q+E+A ++ +E + SI A L + Y+IS D + Sbjct: 9 LGEKLMTLRKKSGYSQQELADRLKVSRQTISNWELNQGAPSIGKAKELADIYKISLDDLV 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 EV + + +G +K D ++ E Sbjct: 69 GDEVEVVARKKREPDLHVLKKLVGKMVKLECSDIDLALEE 108 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +L ++RK G SQ E L + T+SN+E + P I A+++ + K LD + Sbjct: 8 MLGEKLMTLRKKSGYSQQELADRLKVSRQTISNWELNQGAPSIGKAKELADIYKISLDDL 67 Query: 173 YFGDEVIVPKSIKRAKGNQSSKK 195 GDEV V KR KK Sbjct: 68 V-GDEVEVVARKKREPDLHVLKK 89 >gi|154502561|ref|ZP_02039621.1| hypothetical protein RUMGNA_00374 [Ruminococcus gnavus ATCC 29149] gi|153796753|gb|EDN79173.1| hypothetical protein RUMGNA_00374 [Ruminococcus gnavus ATCC 29149] Length = 136 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 34/84 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I++ + +K++R+ N+ TQ ++A S + +E L + + + Sbjct: 17 IQEVHMKFSSTLKELREQNHVTQNQLASHLKLTRSTIAGYETKGTQPDYERLLQIADYFH 76 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKR 108 +S D++ G + + + Sbjct: 77 VSVDYLLTGSETNGISVPPDSSEY 100 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + LK +R+ ++Q + L + ST++ YE T P+ + +I +D Sbjct: 21 HMKFSSTLKELREQNHVTQNQLASHLKLTRSTIAGYETKGTQPDYERLLQIADYFHVSVD 80 Query: 171 WIYFGDEV 178 ++ G E Sbjct: 81 YLLTGSET 88 >gi|88706762|ref|ZP_01104463.1| DNA-binding protein [Congregibacter litoralis KT71] gi|88698943|gb|EAQ96061.1| DNA-binding protein [Congregibacter litoralis KT71] Length = 186 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 28/66 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ +R+ + T +++A + S ++ E G + ++ + + IS + Sbjct: 9 LGERVSQLRQLQSMTLEQLAAASGVSRSMLSQIERGKANPTLAVTQRIAQTFGISIGELV 68 Query: 92 DGEVID 97 D Sbjct: 69 DDPNAS 74 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R+ + M+ + G+ S LS E+G+ P + ++I Q + + D+ Sbjct: 15 QLRQLQSMTLEQLAAASGVSRSMLSQIERGKANPTLAVTQRIAQTFGISIGELV--DDPN 72 Query: 180 VPKSIKRAKGNQS 192 SI +G+ Sbjct: 73 ASASIDVVRGDDP 85 >gi|323464795|gb|ADX76948.1| transcriptional regulator, Cro/CI family [Staphylococcus pseudintermedius ED99] Length = 179 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 36/76 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+ N TQ+E+ + + ++ E+ S ++ L + S Sbjct: 2 EIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRDF 61 Query: 91 YDGEVIDRRYEDVTNK 106 +D + + + + + + Sbjct: 62 FDDKQVAKVHYPKSEQ 77 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R+ K ++Q E G+ + +S E +T P ++ I +V Sbjct: 1 MEIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRD 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + +V K + Sbjct: 61 FFDDKQVAKVHYPKSEQ 77 >gi|315658589|ref|ZP_07911460.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|315496378|gb|EFU84702.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 179 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 39/91 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++K++R N TQ+E+A + + ++ E+ S S+ L + Sbjct: 2 DIGMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ ++ D Y G LK + Sbjct: 62 FQEKTKEKVLYTAEDQTIYDEYDKGYILKWL 92 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK++R K ++Q E + + +S E P ++ I +V Sbjct: 1 MDIGMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + E K + A+ + K Sbjct: 61 FF--QEKTKEKVLYTAEDQTIYDEYDKGY 87 >gi|308069208|ref|YP_003870813.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305858487|gb|ADM70275.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 179 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 30/77 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ RK N + +++ + ++ EN S SI + N ++ ++ Sbjct: 3 IGCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALKVPLAFLL 62 Query: 92 DGEVIDRRYEDVTNKKR 108 E + +++ Sbjct: 63 LKEEERMQVIRKDERRK 79 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ RK K +S + + G+ +S E +T P I I K L + Sbjct: 1 MGIGCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALKVPLAF 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + +E + K + K+ Sbjct: 61 LLLKEEERMQVIRKDERRKTLYGKNN 86 >gi|228933114|ref|ZP_04095975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826555|gb|EEM72328.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 181 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|227507935|ref|ZP_03937984.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192599|gb|EEI72666.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 212 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +IK RK N TQK++A + ++ +ENG I+ L + + IS Sbjct: 8 ISEKIKQCRKQKNLTQKDLADELHLSRKTISGWENGRGYPDIKSITQLSDIFGISV 63 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 P +I ++K RK K ++Q + L + T+S +E GR P+IK ++ + + Sbjct: 5 PMSISEKIKQCRKQKNLTQKDLADELHLSRKTISGWENGRGYPDIKSITQLSDIFGISV 63 >gi|301066025|ref|YP_003788048.1| double-stranded beta-helix-like protein [Lactobacillus casei str. Zhang] gi|300438432|gb|ADK18198.1| Double-stranded beta-helix related protein [Lactobacillus casei str. Zhang] Length = 179 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+RI+D+R N TQ+E+ + + ++ E+ S S+ + + S Sbjct: 2 EIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGQSPADF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E D ++ G RLK + Sbjct: 62 FREEPKDSLVYHEDDQVTYLDEEKGYRLKWL 92 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+R++ +R K ++Q E G+ + +S E ++ P ++ I V + Sbjct: 1 MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGQSPAD 60 Query: 172 IYFGD 176 + + Sbjct: 61 FFREE 65 >gi|239624525|ref|ZP_04667556.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239520911|gb|EEQ60777.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 177 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++K++R TQ+E+A A + ++ E + S SI + + + Sbjct: 2 DIGNKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + + +K I Sbjct: 62 FTETPDEQIVFGKQDYFEKIDTDLNNEIKWI 92 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK +R KG++Q E + +S E+ T P I I Q + Sbjct: 1 MDIGNKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGD 60 Query: 172 IYFG 175 + Sbjct: 61 FFTE 64 >gi|193782634|ref|NP_435827.2| hypothetical protein SMa1076 [Sinorhizobium meliloti 1021] gi|193073090|gb|AAK65239.2| conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 194 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ E+++Y +G RIK +R ++A + ++ E G ++ L + Sbjct: 6 LSTELQRY--AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIA 63 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + + D ++ + + V ++RL Sbjct: 64 MVFGVGLDHFFNADKEEPLIAIVRKEQRL 92 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 38/85 (44%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L YAIG R+K++R K + ++ G+ + LS E+G+ P + +I V Sbjct: 9 ELQRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGV 68 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQS 192 LD + D+ +I R + Sbjct: 69 GLDHFFNADKEEPLIAIVRKEQRLK 93 >gi|160934669|ref|ZP_02082055.1| hypothetical protein CLOLEP_03542 [Clostridium leptum DSM 753] gi|156866122|gb|EDO59494.1| hypothetical protein CLOLEP_03542 [Clostridium leptum DSM 753] Length = 99 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +I+ +R+ TQK+M+ S +E G S+R + + +S D++ D Sbjct: 13 KIRQLREKYGYTQKKMSELLGVERSTYTYYETGKTEPSLRVLRKMAVVFHVSTDYLVD 70 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R+ G +Q + +LLG+ ST + YE G+T P ++ RK+ V D++ Sbjct: 14 IRQLREKYGYTQKKMSELLGVERSTYTYYETGKTEPSLRVLRKMAVVFHVSTDYLV 69 >gi|6010627|gb|AAF01192.1|AF179401_1 putative epoxidase [Sinorhizobium meliloti] Length = 176 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ E+++Y +G RIK +R ++A + ++ E G ++ L + Sbjct: 6 LSTELQRY--AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIA 63 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + + D ++ + + V ++RL Sbjct: 64 MVFGVGLDHFFNADKEEPLIAIVRKEQRL 92 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 38/85 (44%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L YAIG R+K++R K + ++ G+ + LS E+G+ P + +I V Sbjct: 9 ELQRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGV 68 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQS 192 LD + D+ +I R + Sbjct: 69 GLDHFFNADKEEPLIAIVRKEQRLK 93 >gi|296110828|ref|YP_003621209.1| hypothetical protein LKI_03490 [Leuconostoc kimchii IMSNU 11154] gi|295832359|gb|ADG40240.1| hypothetical protein LKI_03490 [Leuconostoc kimchii IMSNU 11154] Length = 162 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 27/78 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK RK TQ + + ++ +E+G I + + + IS D + Sbjct: 2 NFSELIKSQRKERKMTQVDFSELLMVSSKTISNWESGRTLPDIDNVILIAKKLNISLDQL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 + KK+ Sbjct: 62 LLEDKKMINNIKDKAKKQ 79 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 43/80 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +KS RK++ M+Q++F +LL + + T+SN+E GRT+P+I I + LD Sbjct: 1 MNFSELIKSQRKERKMTQVDFSELLMVSSKTISNWESGRTLPDIDNVILIAKKLNISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D+ ++ +AK Sbjct: 61 LLLEDKKMINNIKDKAKKQN 80 >gi|229917672|ref|YP_002886318.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469101|gb|ACQ70873.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 396 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 1/100 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK TQ ++A G +S +++ ENG S+R L + ++S + Sbjct: 2 IGERIKTLRKQKKMTQTQLAEGI-VTKSMLSMIENGKAEASMRSLRELASRLDVSMQQLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 V + + + + IR+ E Sbjct: 61 TDPKEAELQTMVEQLEYEEMTLVSRPDQEIRQMLSPYLKE 100 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R+K++RK K M+Q + + + + S LS E G+ ++ R++ + + Sbjct: 1 MIGERIKTLRKQKKMTQTQLAEGI-VTKSMLSMIENGKAEASMRSLRELASRLDVSMQQL 59 Query: 173 YFG-DEVIVPKSIKRAKGNQSSKKSKKD 199 E + +++ + + + S+ D Sbjct: 60 LTDPKEAELQTMVEQLEYEEMTLVSRPD 87 >gi|254190407|ref|ZP_04896915.1| probable transcription regulator protein [Burkholderia pseudomallei Pasteur 52237] gi|157938083|gb|EDO93753.1| probable transcription regulator protein [Burkholderia pseudomallei Pasteur 52237] Length = 109 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R A +K+Q+ +A A+ + ++ E G+ + S+ + + ++ ++ Sbjct: 20 LGKRIKQCRHAVDKSQETLAFEAHVDRTYISAIERGVANPSVETLANICHALNVTLSELF 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +R A +K R Sbjct: 80 ---APLDGVSLKPTGERRANAATPPEIKRQR 107 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K R SQ + + +S E+G P ++ I L Sbjct: 18 IALGKRIKQCRHAVDKSQETLAFEAHVDRTYISAIERGVANPSVETLANICHALNVTLSE 77 Query: 172 IY 173 ++ Sbjct: 78 LF 79 >gi|289551090|ref|YP_003471994.1| hypothetical protein SLGD_01777 [Staphylococcus lugdunensis HKU09-01] gi|289180622|gb|ADC87867.1| hypothetical protein SLGD_01777 [Staphylococcus lugdunensis HKU09-01] Length = 179 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 39/91 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++K++R N TQ+E+A + + ++ E+ S S+ L + Sbjct: 2 DIGMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ ++ D Y G LK + Sbjct: 62 FQEKTKEKVLYTAEDQTIYDEYDKGYILKWL 92 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK++R K ++Q E + + +S E P ++ I +V Sbjct: 1 MDIGMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + E K + A+ + K Sbjct: 61 FF--QEKTKEKVLYTAEDQTIYDEYDKGY 87 >gi|229092725|ref|ZP_04223870.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-42] gi|228690651|gb|EEL44429.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-42] Length = 114 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +K +RK+ + Q+++A N S +N +ENG + L + + ++ D Sbjct: 1 MKTFSETLKALRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLD 60 Query: 89 WI 90 + Sbjct: 61 VL 62 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 LK++RK + + Q + L + S ++NYE G + P++ ++ LD Sbjct: 1 MKTFSETLKALRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLD 60 Query: 171 WI 172 + Sbjct: 61 VL 62 >gi|167769629|ref|ZP_02441682.1| hypothetical protein ANACOL_00963 [Anaerotruncus colihominis DSM 17241] gi|323485903|ref|ZP_08091238.1| hypothetical protein HMPREF9474_02989 [Clostridium symbiosum WAL-14163] gi|167667990|gb|EDS12120.1| hypothetical protein ANACOL_00963 [Anaerotruncus colihominis DSM 17241] gi|323400891|gb|EGA93254.1| hypothetical protein HMPREF9474_02989 [Clostridium symbiosum WAL-14163] Length = 109 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + KD+G RI D RK N TQ+ +A A+ ++ E G + L + + Sbjct: 1 MENLLKDMGKRIFDRRKQLNMTQETLAELAHVTPQTISTAELGQKAMRPETILKVCDALH 60 Query: 85 ISFDWIYDGEVIDRR 99 IS +++ G + + Sbjct: 61 ISTEYLLRGVITETD 75 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 31/82 (37%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R+ RK M+Q +L + T+S E G+ + K+ +++ Sbjct: 8 MGKRIFDRRKQLNMTQETLAELAHVTPQTISTAELGQKAMRPETILKVCDALHISTEYLL 67 Query: 174 FGDEVIVPKSIKRAKGNQSSKK 195 G S+ K + + K Sbjct: 68 RGVITETDSSLLMEKISTLTPK 89 >gi|166032918|ref|ZP_02235747.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC 27755] gi|166027275|gb|EDR46032.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC 27755] Length = 298 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 46/95 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + S RK GM+Q + + LGM + ++S +E+G +P++ +++ + Sbjct: 1 MDLIKIGKYIASKRKSLGMTQKQLAEKLGMSDKSVSKWERGVCLPDVSVYKELCSILGIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 L+ G+++ I++++ N K Sbjct: 61 LNEFLAGEDIAQENLIQKSETNIIEVIKDNINKEK 95 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 5/94 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I RK+ TQK++A + +V+ +E G+C + L + IS + Sbjct: 5 KIGKYIASKRKSLGMTQKQLAEKLGMSDKSVSKWERGVCLPDVSVYKELCSILGISLNEF 64 Query: 91 YDGEVIDRRYEDVTNKKRL-----DPYAIGARLK 119 GE I + ++ + D LK Sbjct: 65 LAGEDIAQENLIQKSETNIIEVIKDNINKEKCLK 98 >gi|240103181|ref|YP_002959490.1| HTH-type transcriptional regulator, putative [Thermococcus gammatolerans EJ3] gi|239910735|gb|ACS33626.1| HTH-type transcriptional regulator, putative [Thermococcus gammatolerans EJ3] Length = 65 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R+A TQ+E+A + E G S+R A + + + + ++ Sbjct: 3 NRLRELREAKGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGLKIEDVFIY 62 Query: 94 EVI 96 E Sbjct: 63 EGD 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+ KG++Q E K LG+ T+ E+G+ P ++ A KI + ++ ++ Sbjct: 1 MKNRLRELREAKGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGLKIEDVF 60 Query: 174 FGD 176 + Sbjct: 61 IYE 63 >gi|167756260|ref|ZP_02428387.1| hypothetical protein CLORAM_01791 [Clostridium ramosum DSM 1402] gi|167703668|gb|EDS18247.1| hypothetical protein CLORAM_01791 [Clostridium ramosum DSM 1402] Length = 71 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K+ R M+Q + +G+ T++ E+G P +K KI +V K LD Sbjct: 1 MSKNLRIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDE 60 Query: 172 IYFGD 176 +++ D Sbjct: 61 LFWED 65 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK R A + TQK++A +N E G + +++ + + S D ++ + Sbjct: 6 RIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDELFWED 65 Query: 95 VIDRR 99 ++D Sbjct: 66 ILDEE 70 >gi|322386548|ref|ZP_08060175.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus ATCC 51100] gi|321269467|gb|EFX52400.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus ATCC 51100] Length = 136 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E G+ IP+I I + LD Sbjct: 1 MKISQVLKDIRQHHQLTQEALAERLKVSRSAIARWESGKGIPDIGNLIAISREFDLSLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ + TQ+ +A SA+ +E+G I + + E+++S D + Sbjct: 2 KISQVLKDIRQHHQLTQEALAERLKVSRSAIARWESGKGIPDIGNLIAISREFDLSLDQL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|296451357|ref|ZP_06893095.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296880293|ref|ZP_06904258.1| XRE family transcriptional regulator [Clostridium difficile NAP07] gi|296259773|gb|EFH06630.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296428736|gb|EFH14618.1| XRE family transcriptional regulator [Clostridium difficile NAP07] Length = 106 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 33/89 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++++RK TQ+E+ + + +E L + +++S D++ Sbjct: 2 FAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ + V ++ + + Sbjct: 62 GRTLVKENIDTVAAHRKNPHEELPEEAQE 90 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +RK+ G++Q E G+ +G+ L YE P+ K+ V +D++ Sbjct: 1 MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|197261591|ref|YP_002154407.1| prophage repressor [Bacillus phage IEBH] gi|197092463|gb|ACH42338.1| prophage repressor [Bacillus phage IEBH] Length = 105 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ RK N TQ ++A N + S +E G + + + + Y IS D + Sbjct: 2 LSERLIYFRKKNKLTQNDVAHHLNVVRSTYTNWEAGRSEPDVSTLIKIADLYNISLDNLV 61 Query: 92 DGEVIDRRYEDV 103 E +V Sbjct: 62 GREYRIPPQVEV 73 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL RK ++Q + L + ST +N+E GR+ P++ KI + LD + Sbjct: 1 MLSERLIYFRKKNKLTQNDVAHHLNVVRSTYTNWEAGRSEPDVSTLIKIADLYNISLDNL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 G E +P ++ S ++ KK+ N Sbjct: 61 V-GREYRIPPQVEVILDQISKLDTEPQKKALN 91 >gi|148380140|ref|YP_001254681.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934013|ref|YP_001384438.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937509|ref|YP_001387974.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|148289624|emb|CAL83727.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152930057|gb|ABS35557.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933423|gb|ABS38922.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 155 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK +Q+++A + V+ +E + A L Y +S+D++ Sbjct: 3 LGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDYLI 62 Query: 92 DGEVID 97 I Sbjct: 63 SENYIS 68 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 36/65 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +L +RK G+SQ + + L + T+S +E +T+PE+ A+ + ++ D+ Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 172 IYFGD 176 + + Sbjct: 61 LISEN 65 >gi|71903992|ref|YP_280795.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|94990913|ref|YP_599013.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|71803087|gb|AAX72440.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] gi|94544421|gb|ABF34469.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10270] Length = 128 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 7/93 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +R TQKE+A + + +E G + + L N + +S D++ Sbjct: 20 EKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYLL-- 77 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 D+ N LD + LK G Sbjct: 78 -----GNTDLKNPNDLDIEKVKESLKKSLGYNG 105 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 41/84 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +LK++R + G++Q E K++ ++ +E+G P+ K K+ V D++ Sbjct: 17 MLPEKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYL 76 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKS 196 ++ P + K +S KKS Sbjct: 77 LGNTDLKNPNDLDIEKVKESLKKS 100 >gi|330718310|ref|ZP_08312910.1| XRE-family DNA-binding domain-containing protein [Leuconostoc fallax KCTC 3537] Length = 302 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 26/73 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R+ +Q +A +V+ +ENG SI + L + + + G Sbjct: 7 EQLITLRQKKKLSQHALAQKIFVTRQSVSKWENGDAEPSIDKLISLAEILNVDLNHLLIG 66 Query: 94 EVIDRRYEDVTNK 106 + N Sbjct: 67 QQSTADLIMSINH 79 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L ++R+ K +SQ + + + ++S +E G P I + ++ L+ Sbjct: 3 NVFSEQLITLRQKKKLSQHALAQKIFVTRQSVSKWENGDAEPSIDKLISLAEILNVDLNH 62 Query: 172 IYFGDEVIVP 181 + G + Sbjct: 63 LLIGQQSTAD 72 >gi|328956460|ref|YP_004373846.1| hypothetical protein, DUF1700 [Carnobacterium sp. 17-4] gi|328672784|gb|AEB28830.1| hypothetical protein, DUF1700 [Carnobacterium sp. 17-4] Length = 183 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K R A N TQ+++A V+ +E +I L N Y +S D + Sbjct: 3 LGHSLKKARAATNLTQEDIAKKLYVTRQTVSRWEQNKTLPNIFVLQELSNLYGLSIDELI 62 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ E+ + K+ + +A+ L Sbjct: 63 SETKKAVQKKEEEVSMKKFNWFALVGVL 90 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G LK R ++Q + K L + T+S +EQ +T+P I +++ + +D Sbjct: 1 MSLGHSLKKARAATNLTQEDIAKKLYVTRQTVSRWEQNKTLPNIFVLQELSNLYGLSIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + K++++ + S KK Sbjct: 61 LI----SETKKAVQKKEEEVSMKK 80 >gi|297544917|ref|YP_003677219.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842692|gb|ADH61208.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 65 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R ++ TQ+E+A + +N ENG S++ A + ++IS + ++ Sbjct: 3 NRLKVYRAMHDLTQEELATKLGVTRATINAIENGRYDPSLKLAFQIARFFKISIEDVFIY 62 Query: 94 EVI 96 E+ Sbjct: 63 EIE 65 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK R ++Q E LG+ +T++ E GR P +K A +I + K ++ ++ Sbjct: 1 MKNRLKVYRAMHDLTQEELATKLGVTRATINAIENGRYDPSLKLAFQIARFFKISIEDVF 60 Query: 174 FGD 176 + Sbjct: 61 IYE 63 >gi|300768439|ref|ZP_07078339.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493957|gb|EFK29125.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 133 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 1/86 (1%) Query: 32 VGTRIKDIRK-ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K++RK TQ+ +A+ ++ + +E G + + + + ++ D++ Sbjct: 15 FAERLKELRKKEAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDYL 74 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + D Sbjct: 75 LGKNGTPKWATKKDTIDLKDFLEANE 100 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 113 AIGARLKSIRKD-KGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +RK G++Q LGM +TL++YEQG+ P+++ KI D+ Sbjct: 14 MFAERLKELRKKEAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDY 73 Query: 172 IY 173 + Sbjct: 74 LL 75 >gi|91201004|emb|CAJ74061.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 209 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 4/98 (4%) Query: 4 NPF----LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLES 59 PF L +L + Q+ +I + DVG ++K +RK+ TQK++A S Sbjct: 106 KPFDLNDLRKALHNAQKTYCLIKNSKDKLKSDVGKKLKFLRKSKKITQKQLANRTGLSPS 165 Query: 60 AVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 ++ ENG + S+ L + + + + Sbjct: 166 LLSQIENGQIAASLNTLDKLSASLNVKLSYFLEENPTE 203 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + N K +G +LK +RK K ++Q + G+ S LS E G+ + K+ Sbjct: 127 IKNSKDKLKSDVGKKLKFLRKSKKITQKQLANRTGLSPSLLSQIENGQIAASLNTLDKLS 186 Query: 163 QVTKKHLDWIYFGD 176 L + + Sbjct: 187 ASLNVKLSYFLEEN 200 >gi|319892096|ref|YP_004148971.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] gi|317161792|gb|ADV05335.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] Length = 179 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 36/76 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+ N TQ+E+ + + ++ E+ S ++ L + S Sbjct: 2 EIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRDF 61 Query: 91 YDGEVIDRRYEDVTNK 106 +D + + + + + + Sbjct: 62 FDDKQVAKVHYPKSEQ 77 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R+ K ++Q E G+ + +S E +T P ++ I +V Sbjct: 1 MEIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRD 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + +V K + Sbjct: 61 FFDDKQVAKVHYPKSEQ 77 >gi|226948120|ref|YP_002803211.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] gi|226840862|gb|ACO83528.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] Length = 384 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 33/96 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A +++V+ +E+G I L + IS D + Sbjct: 8 NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDEL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + + +L + Sbjct: 68 LGYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCN 103 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 37/81 (45%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L IG + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MINLRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYF 60 Query: 166 KKHLDWIYFGDEVIVPKSIKR 186 +D + + + IK+ Sbjct: 61 NISVDELLGYSPQLTKEDIKK 81 >gi|225387540|ref|ZP_03757304.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme DSM 15981] gi|225046376|gb|EEG56622.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme DSM 15981] Length = 300 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 29/76 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK +RK +Q+++A N AV +E + + + ++IS D + Sbjct: 2 LSETIKTLRKQAGMSQEQLAGRLNVSRQAVTKWETAAGTPDVENLRAISALFQISLDDLL 61 Query: 92 DGEVIDRRYEDVTNKK 107 + ++ Sbjct: 62 ENRSPIPPEQEFRFHS 77 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K++RK GMSQ + L + ++ +E P+++ R I + + LD + Sbjct: 1 MLSETIKTLRKQAGMSQEQLAGRLNVSRQAVTKWETAAGTPDVENLRAISALFQISLDDL 60 Query: 173 YFGDEVIVPKSIKR 186 I P+ R Sbjct: 61 LENRSPIPPEQEFR 74 >gi|167755728|ref|ZP_02427855.1| hypothetical protein CLORAM_01243 [Clostridium ramosum DSM 1402] gi|167704667|gb|EDS19246.1| hypothetical protein CLORAM_01243 [Clostridium ramosum DSM 1402] Length = 145 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + T + +RK TQ+E+A +V +E+G I + L Y ++ D + Sbjct: 5 LSTNLVWLRKHYQYTQEEIAQQVGVSRQSVAKWESGESLPDIDSCMALAKIYNVTIDNLI 64 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + D K Sbjct: 65 NHDEDDAGIVIPPKGKHF 82 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L +RK +Q E + +G+ +++ +E G ++P+I + ++ +D Sbjct: 3 NMLSTNLVWLRKHYQYTQEEIAQQVGVSRQSVAKWESGESLPDIDSCMALAKIYNVTIDN 62 Query: 172 IYFGDEV 178 + DE Sbjct: 63 LINHDED 69 >gi|167580903|ref|ZP_02373777.1| transcriptional regulator, XRE family protein [Burkholderia thailandensis TXDOH] Length = 132 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 5/114 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGT I + R+A TQ ++A + + A++ +E G ++ L + + S D + Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRMPTLHRLQQLSDALDCSVDQLL 80 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 + LD R+ +F +L S Sbjct: 81 QRGSKRPDDQLAMIADALDGLDGDE-----RELVVNFVQQFADMLKARRSPKHR 129 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 28/56 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+ +G++Q + +++ + +S +E+G +P + +++ +D + Sbjct: 25 IAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRMPTLHRLQQLSDALDCSVDQLL 80 >gi|163792697|ref|ZP_02186674.1| transcriptional regulator, Cro/CI family protein [alpha proteobacterium BAL199] gi|159182402|gb|EDP66911.1| transcriptional regulator, Cro/CI family protein [alpha proteobacterium BAL199] Length = 192 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 29/79 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK T + +A G + ++ E G I + + + Sbjct: 5 IGPRLRQLRKRRGVTLETLAAGTGLTKGYLSKIETGKMVPPIATLSRIAQAIGCDMAYFF 64 Query: 92 DGEVIDRRYEDVTNKKRLD 110 + ++D + R D Sbjct: 65 QSQQGADAFDDRVSVVRAD 83 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +RK +G++ G+ LS E G+ +P I +I Q + + + Sbjct: 9 LRQLRKRRGVTLETLAAGTGLTKGYLSKIETGKMVPPIATLSRIAQAIGCDMAYFF 64 >gi|83589149|ref|YP_429158.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572063|gb|ABC18615.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 78 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K R+K +R+ +N + +++A + A+ FE G+ S S+ + + + +++S D Sbjct: 7 KIFALRLKFLREQHNLSTQKLADALGLKSKGAITQFEKGIISPSVDTLISIADFFDVSLD 66 Query: 89 WIYDGEVIDRRY 100 ++ RRY Sbjct: 67 YLVGRSDDPRRY 78 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQV 164 L+ RLK +R+ +S + LG+ ++ +E+G P + I Sbjct: 1 MYMLNKKIFALRLKFLREQHNLSTQKLADALGLKSKGAITQFEKGIISPSVDTLISIADF 60 Query: 165 TKKHLDWIY 173 LD++ Sbjct: 61 FDVSLDYLV 69 >gi|88812246|ref|ZP_01127497.1| probable transcriptional regulator [Nitrococcus mobilis Nb-231] gi|88790497|gb|EAR21613.1| probable transcriptional regulator [Nitrococcus mobilis Nb-231] Length = 179 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 8/103 (7%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K +RK T + +A +S ++ E G+ + SI AL + + + ++ Sbjct: 4 RLKLLRKKLGFTLEALAQQTGLTKSYLSKVERGLNTPSIAVALKVAEALNVQVEELFSDG 63 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 + A G G++ +G Sbjct: 64 DEASDGYSLVRANERGSLASGDD--------GLAYASLANRIG 98 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +RK G + + G+ S LS E+G P I A K+ + ++ ++ Sbjct: 1 MSMRLKLLRKKLGFTLEALAQQTGLTKSYLSKVERGLNTPSIAVALKVAEALNVQVEELF 60 Query: 174 F-GDEVIVPKSIKRAKGNQS 192 GDE S+ RA S Sbjct: 61 SDGDEASDGYSLVRANERGS 80 >gi|323351737|ref|ZP_08087391.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322122223|gb|EFX93949.1| transcriptional regulator [Streptococcus sanguinis VMC66] Length = 136 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I +RK N +Q+++A + +E G + Y+ L + +++S D + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDELV 61 Query: 92 DGEVI 96 E Sbjct: 62 HLESN 66 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 36/76 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I + +RK + +SQ + + +G+ T++ +E G ++P++ + ++ LD + Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60 Query: 173 YFGDEVIVPKSIKRAK 188 + ++ + K Sbjct: 61 VHLESNLLTTPSFKGK 76 >gi|326204395|ref|ZP_08194253.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985427|gb|EGD46265.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 134 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +K IR+ TQ ++A N + +E I L + + +S D++ Sbjct: 2 VGDILKTIREEKKITQDQIAQLLNIKRQTYSSYERNKSLPDINILSKLADYFNVSTDYLL 61 Query: 92 DGEVIDRRYEDVT 104 I E Sbjct: 62 GRSDIMNYDEYKD 74 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 38/67 (56%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G LK+IR++K ++Q + +LL + T S+YE+ +++P+I K+ D++ Sbjct: 1 MVGDILKTIREEKKITQDQIAQLLNIKRQTYSSYERNKSLPDINILSKLADYFNVSTDYL 60 Query: 173 YFGDEVI 179 +++ Sbjct: 61 LGRSDIM 67 >gi|253987632|ref|YP_003038988.1| phage n15 protein gp48 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779082|emb|CAQ82242.1| similar to protein gp48 from prophage n15 [Photorhabdus asymbiotica] Length = 99 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 PF E L++ + Q K + ++KD RKA + TQ+++A + ++ Sbjct: 10 PFSEAKTLLLEDAATLEAYNDIQIRKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRM 69 Query: 65 ENGMCSTSIRYALYLRNEYE 84 ENG ++ Sbjct: 70 ENGKSVPNLDTLSRYAAALG 89 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 A+ +LK RK ++Q + + +G +S E G+++P + + Sbjct: 36 ALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLDTLSRYAAALG 89 >gi|255279936|ref|ZP_05344491.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255269709|gb|EET62914.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 642 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+ TQ EMA S +E G + + + + + S D ++ + Sbjct: 12 YRRQRGYTQAEMAEKLEISRSTYTNYETGNRAPDFETLIQIGDILDCSLDELFGRD 67 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L R+ +G +Q E + L + ST +NYE G P+ + +I + LD ++ Sbjct: 7 EYLTMYRRQRGYTQAEMAEKLEISRSTYTNYETGNRAPDFETLIQIGDILDCSLDELFGR 66 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 D + R + ++ + + Sbjct: 67 DRGGSARYPDRVREAAPVYRTNTEYR 92 >gi|222081095|ref|YP_002540458.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725774|gb|ACM28863.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 200 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 33/84 (39%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ T + D+G R++ +R + T KE+++ + SA++ EN S + + Sbjct: 1 MLDTATEERDEMDLGKRVRALRANIDMTIKEVSLRSGMSASAISKIENNQLSPTYENIIK 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYED 102 L + ++ Sbjct: 61 LARGLGVDISELFSDPSKQMPRGR 84 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 T + D +G R++++R + M+ E GM S +S E + P + K Sbjct: 1 MLDTATEERDEMDLGKRVRALRANIDMTIKEVSLRSGMSASAISKIENNQLSPTYENIIK 60 Query: 161 IKQVTKKHLDWIYFGDEVIVPK 182 + + + ++ +P+ Sbjct: 61 LARGLGVDISELFSDPSKQMPR 82 >gi|77745351|gb|ABB02576.1| putative transcriptional regulator [Lactobacillus reuteri] Length = 234 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 RI ++RK T +++A + ++ +E G + L N ++++ ++ Sbjct: 9 NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLSNYFDVTVYYL 65 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+ +RK+KG++ + +G+ N+T+S YE G+ P+++ +K+ + ++ Sbjct: 7 PHNRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLSNYFDVTVYYL 65 >gi|322376567|ref|ZP_08051060.1| conserved domain protein [Streptococcus sp. M334] gi|321282374|gb|EFX59381.1| conserved domain protein [Streptococcus sp. M334] Length = 73 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+RK ++ TQK++A + SA E G + + + L N Y++S D++ Sbjct: 3 RRLRDLRKDHDLTQKQIAKILSFTNSAYAKIERGEHALTADVLVTLSNFYDVSTDYLLGL 62 Query: 94 EVIDRR 99 + Sbjct: 63 TDFPDK 68 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +RKD ++Q + K+L NS + E+G + D++ Sbjct: 1 MYRRLRDLRKDHDLTQKQIAKILSFTNSAYAKIERGEHALTADVLVTLSNFYDVSTDYLL 60 >gi|187779176|ref|ZP_02995649.1| hypothetical protein CLOSPO_02771 [Clostridium sporogenes ATCC 15579] gi|187772801|gb|EDU36603.1| hypothetical protein CLOSPO_02771 [Clostridium sporogenes ATCC 15579] Length = 155 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 30/66 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK + +Q+++A + ++ +E + A L Y +S+D++ Sbjct: 3 LGEKLLYLRKKSGLSQEDVAEKLSVSRQTISKWETDQTVPELNKAKLLSQLYNVSYDYLI 62 Query: 92 DGEVID 97 I Sbjct: 63 SENYIS 68 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +L +RK G+SQ + + L + T+S +E +T+PE+ A+ + Q+ D+ Sbjct: 1 MSLGEKLLYLRKKSGLSQEDVAEKLSVSRQTISKWETDQTVPELNKAKLLSQLYNVSYDY 60 Query: 172 IYFGD 176 + + Sbjct: 61 LISEN 65 >gi|167745764|ref|ZP_02417891.1| hypothetical protein ANACAC_00458 [Anaerostipes caccae DSM 14662] gi|167654795|gb|EDR98924.1| hypothetical protein ANACAC_00458 [Anaerostipes caccae DSM 14662] Length = 149 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 3/105 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + + RK + +Q+++A ++ +E G IR + L Y +S D + Sbjct: 2 NLGNSLFNARKKSGLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM---SQIEF 132 + ++ + E + K K + Q E Sbjct: 62 IEFDIELKEIEQAIENTNEEIQQKVDWTKVWAKKYPILTSYQEEV 106 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 40/90 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G L + RK G+SQ + LG+ T+S +E G T+P+I+ ++ + + LD Sbjct: 1 MNLGNSLFNARKKSGLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + D + N+ ++ K Sbjct: 61 LIEFDIELKEIEQAIENTNEEIQQKVDWTK 90 >gi|166032705|ref|ZP_02235534.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC 27755] gi|166027062|gb|EDR45819.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I +R +Q E+A AV+ +ENG + L E+++S + + Sbjct: 4 EIKNIILKLRTERGMSQDELADKIMVTRQAVSRWENGATVPNTDTLKLLSKEFDVSINTL 63 Query: 91 Y 91 Sbjct: 64 L 64 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I + +R ++GMSQ E + + +S +E G T+P + + + ++ Sbjct: 3 MEIKNIILKLRTERGMSQDELADKIMVTRQAVSRWENGATVPNTDTLKLLSKEFDVSINT 62 Query: 172 IY 173 + Sbjct: 63 LL 64 >gi|219666089|ref|YP_002456524.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219536349|gb|ACL18088.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 68 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +++ +R+ TQKE+ A+N E G + S+ A L +++S + ++ Sbjct: 3 NKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFNPSLWLAYDLAKLFKVSIEELF 60 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 35/68 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +++ +R++ G++Q E G+ +G+ ++ E G+ P + A + ++ K ++ ++ Sbjct: 1 MHNKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFNPSLWLAYDLAKLFKVSIEELF 60 Query: 174 FGDEVIVP 181 E Sbjct: 61 LFIEEDRK 68 >gi|307325149|ref|ZP_07604353.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889295|gb|EFN20277.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 509 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 TDDYLSRIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|218437353|ref|YP_002375682.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7424] gi|218170081|gb|ACK68814.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7424] Length = 377 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++ IK IR +Q+++A A A++ E+G + S AL L + Sbjct: 5 RELRNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVED 64 Query: 90 IYDGEVIDRRYEDVTN 105 ++ + + E Sbjct: 65 LFWLDNDETMIEAFPT 80 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +K IR G+SQ + ++ G+ +S E G+ P A ++ + ++ +++ Sbjct: 8 RNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVEDLFW 67 Query: 175 GD 176 D Sbjct: 68 LD 69 >gi|332654591|ref|ZP_08420334.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516555|gb|EGJ46161.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 237 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 29/67 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +R+ +Q+ A ++ ++ +ENG+ + + + + Y Sbjct: 1 MNNLNAEFARTLSLLRQEKGVSQRAAAAELGISQALMSHYENGIREPGLSFVVKACDYYG 60 Query: 85 ISFDWIY 91 +S D++ Sbjct: 61 VSADYLL 67 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 10/99 (10%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L +R++KG+SQ LG+ + +S+YE G P + K D++ Sbjct: 7 EFARTLSLLRQEKGVSQRAAAAELGISQALMSHYENGIREPGLSFVVKACDYYGVSADYL 66 Query: 173 Y----------FGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 G E + S ++ + S + KK Sbjct: 67 LGRTLTRDGTTIGAEELYDVSEEKNNSMRGSVLALLSKK 105 >gi|307128304|ref|YP_003880335.1| XRE family transcriptional regulator [Streptococcus pneumoniae 670-6B] gi|306485366|gb|ADM92235.1| transcriptional regulator, XRE family [Streptococcus pneumoniae 670-6B] Length = 68 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK++R K Q + + + T ++E+G T P + A +I V +D I Sbjct: 1 MSKMTLKTLRTLKNWRQSDAAAAVNVSVDTWGHWERGITEPSVSKAYQIASVFDVSVDDI 60 Query: 173 YF 174 F Sbjct: 61 IF 62 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K +R N Q + A N +E G+ S+ A + + +++S D I Sbjct: 6 LKTLRTLKNWRQSDAAAAVNVSVDTWGHWERGITEPSVSKAYQIASVFDVSVDDIIF 62 >gi|295105402|emb|CBL02946.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 66 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + TQ E+A AV +E+ C I + + L Y++S D++ Sbjct: 4 ISERLQHLRLTHGYTQTELARTMGVTRRAVYAWEHDKC-PEIPHLIQLAQFYQVSTDYLL 62 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RL+ +R G +Q E + +G+ + +E + PEI ++ Q + D Sbjct: 1 MTIISERLQHLRLTHGYTQTELARTMGVTRRAVYAWEHDKC-PEIPHLIQLAQFYQVSTD 59 Query: 171 WIY 173 ++ Sbjct: 60 YLL 62 >gi|294631998|ref|ZP_06710558.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] gi|292835331|gb|EFF93680.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] Length = 509 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|237735272|ref|ZP_04565753.1| transcriptional regulator [Mollicutes bacterium D7] gi|229381017|gb|EEO31108.1| transcriptional regulator [Coprobacillus sp. D7] Length = 221 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I RK TQ+E+A V +E+G ++ Y + L + I+ D + Sbjct: 2 IGDKIILYRKRKGLTQEELADLLEVSRQTVTKWESGSVLPNLDYIMGLSVIFGITIDNLV 61 Query: 92 DGEV--IDRRYEDVTNKKRLDPY 112 ++N +D Sbjct: 62 KDNDCAKQEIESKISNYNWIDFM 84 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++ RK KG++Q E LL + T++ +E G +P + + + +D + Sbjct: 1 MIGDKIILYRKRKGLTQEELADLLEVSRQTVTKWESGSVLPNLDYIMGLSVIFGITIDNL 60 Query: 173 YFGDEVIVPKSIKR 186 ++ + + Sbjct: 61 VKDNDCAKQEIESK 74 >gi|170758576|ref|YP_001785951.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169405565|gb|ACA53976.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 130 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +RK +Q E+ N ++ +E G + + + L + ++IS D + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFKISLDELV 62 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +L S+RK KG+SQ E G L + T+S +E G T PE++ + K LD Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFKISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + + + N+ Sbjct: 61 LVMDVKAKESTKTEPLVMNR 80 >gi|324323883|gb|ADY24926.1| putative transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 125 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 29/69 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++++R T KE+ + ++ +E G ++ + + +S D++ Sbjct: 6 FGKNLRNLRTQKGLTLKELGQELGVSGNTISGWELGNKEPNMDMIKVIAEFFTVSVDYLL 65 Query: 92 DGEVIDRRY 100 EV++ Sbjct: 66 QHEVLESED 74 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G L+++R KG++ E G+ LG+ +T+S +E G P + + I + Sbjct: 1 MKDNIFGKNLRNLRTQKGLTLKELGQELGVSGNTISGWELGNKEPNMDMIKVIAEFFTVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD--KKSSN 204 +D++ EV+ + K A Q +++ + K+S N Sbjct: 61 VDYLLQH-EVLESEDHKEAIVQQLARELADEIYKRSDN 97 >gi|300856445|ref|YP_003781429.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436560|gb|ADK16327.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ IRK + TQ+E+A + ENG + SI A + + +S + I+ Sbjct: 3 NRLEKIRKQHGITQEELAQKLEVSRQTIGSLENGRYNPSILLAFKISKFFNVSIEEIFIY 62 Query: 94 EVIDRRYE 101 E Sbjct: 63 EESSENEN 70 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK G++Q E + L + T+ + E GR P I A KI + ++ I+ Sbjct: 1 MKNRLEKIRKQHGITQEELAQKLEVSRQTIGSLENGRYNPSILLAFKISKFFNVSIEEIF 60 Query: 174 FGDEVIVPKS 183 +E ++ Sbjct: 61 IYEESSENEN 70 >gi|167588868|ref|ZP_02381256.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 177 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G RI+ +R+ T A A + ++ E G SI + + ++ D Sbjct: 1 MGNRIRTLRRQLKLTLDVTAASAGISKPFLSQIERGRAMPSIASLVGIARALGVTID 57 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R++++R+ ++ G+ LS E+GR +P I I + +D Sbjct: 1 MGNRIRTLRRQLKLTLDVTAASAGISKPFLSQIERGRAMPSIASLVGIARALGVTIDHFV 60 >gi|315221506|ref|ZP_07863426.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315189340|gb|EFU23035.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 136 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + ST++ +E + IP+I I + LD Sbjct: 1 MKISQVLKDIRQQNQLTQETLAERLKVSRSTIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A S + +E+ I + + E++IS D + Sbjct: 2 KISQVLKDIRQQNQLTQETLAERLKVSRSTIARWESEKGIPDIGNLIAISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|268610105|ref|ZP_06143832.1| putative regulatory protein [Ruminococcus flavefaciens FD-1] gi|325679993|ref|ZP_08159562.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108431|gb|EGC02678.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 126 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RIK++R A Q +A + +S ++ E G + S+ + + E + + D Sbjct: 6 KLIGKRIKEVRTARKMPQMLLAEKCDISDSYLSYIECGRKTPSLEVIIRIARELDTTVDS 65 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + +G + Sbjct: 66 LLEGNQNTDTGTYEKEISEM 85 Score = 57.7 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 42/95 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ IG R+K +R + M Q+ + + +S LS E GR P ++ +I + Sbjct: 1 MIINAKLIGKRIKEVRTARKMPQMLLAEKCDISDSYLSYIECGRKTPSLEVIIRIARELD 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +D + G++ + ++ + S +K+ Sbjct: 61 TTVDSLLEGNQNTDTGTYEKEISEMMNDCSPYEKR 95 >gi|260431708|ref|ZP_05785679.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter lacuscaerulensis ITI-1157] gi|260415536|gb|EEX08795.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter lacuscaerulensis ITI-1157] Length = 188 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 2/103 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + R+K+ R+A + + +A + S V+ E G S +I L Sbjct: 1 MTENSDDILTRLPARLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLWNLT 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKK--RLDPYAIGARLKSI 121 ++ F + + + E + + + +D R++ + Sbjct: 61 RALQVDFAGLLEESETTDQIEVLRSAEVPSIDNMGQSCRIRIL 103 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ KG+S L G+ S +S E+G + P I + + + + Sbjct: 13 PARLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLLE 72 Query: 175 GDEVIVPKSIKRA 187 E + R+ Sbjct: 73 ESETTDQIEVLRS 85 >gi|228952477|ref|ZP_04114558.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807214|gb|EEM53752.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 114 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK IR N +QKE+A N SA++L+E S S + +S D++ Sbjct: 4 LGERIKSIRTKKNISQKELAEALNVNRSAISLYETNRKSPSRENTYKIATVLGVSIDYLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + N + + Sbjct: 64 GMQTDLSLETEKINSETAHLMKRLDNM 90 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R+KSIR K +SQ E + L + S +S YE R P + KI V +D Sbjct: 1 MVTLGERIKSIRTKKNISQKELAEALNVNRSAISLYETNRKSPSRENTYKIATVLGVSID 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|255505928|ref|ZP_05348929.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265073|gb|EET58278.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 112 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R A N TQ+++A ENG S ++ + +++ I Sbjct: 7 LGGRIKALRNAKNFTQEQIADRIGVSRQKYARIENGANSITLDILSAIAEVLDVTVGDI 65 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K++R K +Q + +G+ + E G + I +V + I Sbjct: 11 IKALRNAKNFTQEQIADRIGVSRQKYARIENGANSITLDILSAIAEVLDVTVGDI 65 >gi|168179538|ref|ZP_02614202.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182669756|gb|EDT81732.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 136 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 16/122 (13%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ R+K R + Q E+A N + V+ +ENG L + + S D Sbjct: 1 MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD 60 Query: 89 WIY---------------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 +I DG + + + + +K + +++ + Sbjct: 61 YILGRSENRNGIISKANIDGSNYEFELDKTIFPNGITREQMINYIKEL-EERNKELEKEA 119 Query: 134 KL 135 ++ Sbjct: 120 EI 121 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RLK R K ++Q E K L + T+SN+E G IP+ K+ +D Sbjct: 1 MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 +I G I +A + S+ + + DK Sbjct: 61 YIL-GRSENRNGIISKANIDGSNYEFELDK 89 >gi|87199050|ref|YP_496307.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134731|gb|ABD25473.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 464 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K IR+ TQ+ MA S + L E + L L Y++ + Sbjct: 8 LGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYKLDMADLA 67 Query: 92 DGEVIDRRYE 101 E D Sbjct: 68 ADERDDYARR 77 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK IR++ G++Q + LG+ S ++ E+ + ++ + K + + + Sbjct: 12 LKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYKLDMADLAADER 71 Query: 178 VIVPKSIKRA 187 + + A Sbjct: 72 DDYARRLSDA 81 >gi|56752065|ref|YP_172766.1| transcription regulator [Synechococcus elongatus PCC 6301] gi|81300847|ref|YP_401055.1| transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687024|dbj|BAD80246.1| transcription regulator [Synechococcus elongatus PCC 6301] gi|81169728|gb|ABB58068.1| transcriptional regulator, XRE family with cupin sensor domain [Synechococcus elongatus PCC 7942] Length = 230 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G I+++R+ ++ T E++ A ++ EN S S+ L + +S Sbjct: 23 RYLGNTIRELRQRHDLTIAEVSQKAGISRGMLSKIENAQTSASLETLERLVSVLGVSLSA 82 Query: 90 IYDGEVIDRRY 100 ++ G Sbjct: 83 LFKGYEASSEQ 93 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 32/87 (36%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++ +R+ ++ E + G+ LS E +T ++ ++ V L Sbjct: 22 CRYLGNTIRELRQRHDLTIAEVSQKAGISRGMLSKIENAQTSASLETLERLVSVLGVSLS 81 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 ++ G E + +G + Sbjct: 82 ALFKGYEASSEQVFLVPEGTAKEVVRR 108 >gi|325833014|ref|ZP_08165641.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485731|gb|EGC88196.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 153 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 33/93 (35%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P ++QY +G ++ +RKA TQ+ + + S ++ E G S+ + L Sbjct: 44 PLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRA 103 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 E + D + YA Sbjct: 104 LEADPVELVDTAAFKLSDFPERQQGHARLYAPP 136 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +G L+ +RK +G++Q G ++G +S +SN E+GR +P + K+ + + Sbjct: 51 FILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRALEADPVE 110 Query: 172 IY 173 + Sbjct: 111 LV 112 >gi|317488770|ref|ZP_07947304.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA] gi|316912140|gb|EFV33715.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA] Length = 124 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 33/93 (35%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P ++QY +G ++ +RKA TQ+ + + S ++ E G S+ + L Sbjct: 15 PLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRA 74 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 E + D + YA Sbjct: 75 LEADPVELVDTAAFKLSDFPERQQGHARLYAPP 107 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +G L+ +RK +G++Q G ++G +S +SN E+GR +P + K+ + + Sbjct: 22 FILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRALEADPVE 81 Query: 172 IY 173 + Sbjct: 82 LV 83 >gi|313906668|ref|ZP_07839986.1| plasmid maintenance system antidote protein, XRE family [Eubacterium cellulosolvens 6] gi|313468490|gb|EFR63874.1| plasmid maintenance system antidote protein, XRE family [Eubacterium cellulosolvens 6] Length = 107 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG RIK +R TQ+E+AI + +SA++ +EN S L + +S D+I Sbjct: 4 VGGRIKKLRTDAGYTQEELAIELHLEGKSAISNYENNSRGVSAEMLTQLSRLFHVSADYI 63 Query: 91 YDGEVIDRRYEDVTNKKRL 109 +G+ D V + Sbjct: 64 LNGDSPDNLDHIVNEAIEI 82 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K +R D G +Q E L + S +SNYE + ++ ++ D+I GD Sbjct: 8 IKKLRTDAGYTQEELAIELHLEGKSAISNYENNSRGVSAEMLTQLSRLFHVSADYILNGD 67 Query: 177 EVI-VPKSIKRAKGNQSSKKSKKDKKSS 203 + + A ++ K+ K KKS+ Sbjct: 68 SPDNLDHIVNEAIEILNNLKTDKAKKSA 95 >gi|296116502|ref|ZP_06835113.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295976968|gb|EFG83735.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 120 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 17/114 (14%) Query: 32 VGTRIKDIRKA------NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +R+ +R+A + +E+A S ++ +E G L L Y + Sbjct: 5 IASRLTALRRALAEKLGRKVSAQEVADAVGISRSTLSGYERGHDRPGRETLLALATYYSV 64 Query: 86 SFDWIYDGEVIDRRYEDVTNK-----------KRLDPYAIGARLKSIRKDKGMS 128 S D++ GE+ ++ D + +R+D + L +R + Sbjct: 65 SVDYLASGEMPAVQHPDNVAQNGEEALLLALWRRMDEDQRRSWLGLLRSMIHID 118 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 125 KGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + +S E +G+ STLS YE+G P + + +D++ G+ Sbjct: 22 RKVSAQEVADAVGISRSTLSGYERGHDRPGRETLLALATYYSVSVDYLASGE 73 >gi|257792151|ref|YP_003182757.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476048|gb|ACV56368.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 141 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 33/93 (35%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P ++QY +G ++ +RKA TQ+ + + S ++ E G S+ + L Sbjct: 32 PLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRA 91 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 E + D + YA Sbjct: 92 LEADPVELVDTAAFKLSDFPERQQGHARLYAPP 124 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +G L+ +RK +G++Q G ++G +S +SN E+GR +P + K+ + + Sbjct: 39 FILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRALEADPVE 98 Query: 172 IY 173 + Sbjct: 99 LV 100 >gi|269836649|ref|YP_003318877.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269785912|gb|ACZ38055.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 125 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 40/129 (31%), Gaps = 6/129 (4%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + Y + VG I+ +R + ++++ + ++ E G S L Sbjct: 1 MGERGESYREAVGATIRGLRLTRGWSLRDLSQASGISVPYLSEIERGRKDPSGAVLAQLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 ++S + + + + L++ + G+ + + ++ Sbjct: 61 EALDLSLGALLC----EIGRAIDASYTPDGAMSARQELRAALE--GLPEEDVAEVARFAR 114 Query: 141 STLSNYEQG 149 EQ Sbjct: 115 YLRWRREQD 123 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+GA ++ +R +G S + + G+ LS E+GR P ++ + L + Sbjct: 11 AVGATIRGLRLTRGWSLRDLSQASGISVPYLSEIERGRKDPSGAVLAQLAEALDLSLGAL 70 Query: 173 Y 173 Sbjct: 71 L 71 >gi|197261593|ref|YP_002154410.1| helix-turn-helix domain protein [Bacillus phage IEBH] gi|197092465|gb|ACH42340.1| helix-turn-helix domain protein [Bacillus phage IEBH] gi|283765986|gb|ADB28402.1| helix-turn-helix domain protein [Bacillus phage 250] Length = 137 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 38/96 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K R+ TQ ++ + ++ ++ +E+G L + YE+S D++ Sbjct: 25 NLNERLKACREKKGYTQTFISEKLDVNKATLSSYESGRRKPDYETLTKLADIYEVSVDYL 84 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + + T + + + + +D Sbjct: 85 LGRSIHQKLTVKETEEISKETNEWMKLINQLSEDNK 120 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK+ R+ KG +Q + L + +TLS+YE GR P+ + K+ + + +D+ Sbjct: 24 MNLNERLKACREKKGYTQTFISEKLDVNKATLSSYESGRRKPDYETLTKLADIYEVSVDY 83 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + + + + + SK++ + K Sbjct: 84 LLG---RSIHQKLTVKETEEISKETNEWMK 110 >gi|21914458|gb|AAM81423.1|AF527608_45 C2 protein [Salmonella phage P22-pbi] Length = 216 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L + S D++ Sbjct: 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGEDLLALSKALQCSPDYLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G++ + + Y + + + Sbjct: 66 KGDLSQTNVAYHSRHEPRGSYPLISWV 92 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+++ RK + Q GK++G+ N +S +E+ T P + + + + Sbjct: 1 MNTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGEDLLALSKALQCS 60 Query: 169 LDWIYFGD 176 D++ GD Sbjct: 61 PDYLLKGD 68 >gi|291544611|emb|CBL17720.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 145 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD+ I +R +Q +A AV+ +ENG ++ L +++S + Sbjct: 4 KDI---ILQLRTQMGLSQDALAEKIYVTRQAVSRWENGETIPNVEALKLLSQVFDVSINT 60 Query: 90 IY 91 + Sbjct: 61 LL 62 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +R G+SQ + + + +S +E G TIP ++ + + QV ++ Sbjct: 1 METKDIILQLRTQMGLSQDALAEKIYVTRQAVSRWENGETIPNVEALKLLSQVFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|154500601|ref|ZP_02038639.1| hypothetical protein BACCAP_04274 [Bacteroides capillosus ATCC 29799] gi|150270490|gb|EDM97799.1| hypothetical protein BACCAP_04274 [Bacteroides capillosus ATCC 29799] Length = 75 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E Q +K +G I RK +Q +A N + ++ E C+ S+ + Sbjct: 1 MRKEQSQKYKYLGLNIAYYRKERGLSQSRLAERINVSRTHMSRIETADCAVSLDVVFAIC 60 Query: 81 NEYEISFDWIY 91 + E+ + ++ Sbjct: 61 DALEVPPEKLF 71 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 27/71 (38%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + ++ +G + RK++G+SQ + + + + +S E + I Sbjct: 1 MRKEQSQKYKYLGLNIAYYRKERGLSQSRLAERINVSRTHMSRIETADCAVSLDVVFAIC 60 Query: 163 QVTKKHLDWIY 173 + + ++ Sbjct: 61 DALEVPPEKLF 71 >gi|78485682|ref|YP_391607.1| XRE family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363968|gb|ABB41933.1| transcriptional regulator, XRE family [Thiomicrospira crunogena XCL-2] Length = 198 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 29/89 (32%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + E + +G I + RK T ++A + ++ ENG S S+ L + Sbjct: 1 MSEKEHQTLDLHIGKIINNARKKQGLTIADIAEQSGISRGMLSKIENGQVSPSLDSLLKI 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 + + + + + Sbjct: 61 SRTLGVPISSFFREFDNEEGGAQLVRSEE 89 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 3/100 (3%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + LD IG + + RK +G++ + + G+ LS E G+ P + K Sbjct: 1 MSEKEHQTLD-LHIGKIINNARKKQGLTIADIAEQSGISRGMLSKIENGQVSPSLDSLLK 59 Query: 161 IKQVTKKHLDWIY--FGDEVIVPKSIKRAKGNQSSKKSKK 198 I + + + F +E + ++ + + ++ K Sbjct: 60 ISRTLGVPISSFFREFDNEEGGAQLVRSEEKLEVVRRGTK 99 >gi|78222436|ref|YP_384183.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193691|gb|ABB31458.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 173 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 2/94 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGA--NQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D+G +K +RK TQK++A + + E G S++ + L + Sbjct: 34 DIGRELKRLRKDRELTQKDLAARVDGGLDYTYIGKIERGEQLPSLKMLMGLSAALGVPVS 93 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + E + + L+ + Sbjct: 94 HFFQEESPATNSPLRMADSDVKSMELHKELRQLH 127 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 118 LKSIRKDKGMSQIEFGKLL--GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +RKD+ ++Q + + G+ + + E+G +P +K + + + Sbjct: 39 LKRLRKDRELTQKDLAARVDGGLDYTYIGKIERGEQLPSLKMLMGLSAALGVPVSHFFQE 98 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + ++ A + S + K+ + +P Sbjct: 99 ESPATNSPLRMADSDVKSMELHKELRQLHP 128 >gi|293378376|ref|ZP_06624545.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|292643240|gb|EFF61381.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 370 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + ++RK TQ+ +A +++V+ +E G + L + +++S D + Sbjct: 6 LSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELL 65 Query: 92 DGEVI 96 Sbjct: 66 GYHPQ 70 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 40/77 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++ + ++RK KG++Q + +G+ +++S +E G+++P++ K+ Sbjct: 1 MEELSLSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVS 60 Query: 169 LDWIYFGDEVIVPKSIK 185 +D + + + I+ Sbjct: 61 VDELLGYHPQLTKEQIR 77 >gi|150018645|ref|YP_001310899.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905110|gb|ABR35943.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 371 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A +++V+ +E+G+ I L + IS D + Sbjct: 5 NIGECIAYKRKEKGVTQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNISVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 ++ + L Sbjct: 65 LGYSPQLKKEDIKKIYNELSHEFAIKP 91 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MKKLNIGECIAYKRKEKGVTQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK+ Sbjct: 61 VDELLGYSPQLKKEDIKK 78 >gi|332798146|ref|YP_004459645.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695881|gb|AEE90338.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 100 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 6/99 (6%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK IR A ++A ++ ENG SI + + I+ Sbjct: 2 NIGHRIKQIRIAKGLQGIQLAEKVGITNVYLSYLENGTKIPSIETLQKICDALGITLSEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAI------GARLKSIRK 123 + E + E + + + LK++R+ Sbjct: 62 FMDENANLPPEYQELIENVKVLSPKQLELLNEFLKTLRQ 100 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 37/87 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K IR KG+ I+ + +G+ N LS E G IP I+ +KI L Sbjct: 1 MNIGHRIKQIRIAKGLQGIQLAEKVGITNVYLSYLENGTKIPSIETLQKICDALGITLSE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + +P + N K+ Sbjct: 61 FFMDENANLPPEYQELIENVKVLSPKQ 87 >gi|326388406|ref|ZP_08210002.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207138|gb|EGD57959.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 485 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 26/70 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +R+ TQ+ MA S V L E + L L Y++ + Sbjct: 29 LGPRIKRLRRELGLTQQAMAEDLGISPSYVALIERNQRPLTADLLLRLARSYKLDMSELA 88 Query: 92 DGEVIDRRYE 101 E D Sbjct: 89 ADERDDYARR 98 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 27/59 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K +R++ G++Q + LG+ S ++ E+ + ++ + K + + + Sbjct: 33 IKRLRRELGLTQQAMAEDLGISPSYVALIERNQRPLTADLLLRLARSYKLDMSELAADE 91 >gi|228984922|ref|ZP_04145092.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774872|gb|EEM23268.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 181 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +++ RK T KE+A A+ S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKLEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +L+ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKLEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|160934666|ref|ZP_02082052.1| hypothetical protein CLOLEP_03539 [Clostridium leptum DSM 753] gi|156866119|gb|EDO59491.1| hypothetical protein CLOLEP_03539 [Clostridium leptum DSM 753] Length = 124 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 16/115 (13%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI- 90 G ++++RK + TQK++A ++ +E G + + L ++++ D++ Sbjct: 5 FGAILQELRKDHKITQKDLADILGVTSKTISNYETGSQFPDLLIIIKLAEYFDVNMDYLG 64 Query: 91 ---------------YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + ++ +D+ D I + +K +RK K Q Sbjct: 65 GRTRISSKWETIEKGLEVNNLNLNLDDLLTLDNEDKKLIISFIKRLRKQKSYPQK 119 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GA L+ +RKD ++Q + +LG+ + T+SNYE G P++ K+ + ++D++ Sbjct: 5 FGAILQELRKDHKITQKDLADILGVTSKTISNYETGSQFPDLLIIIKLAEYFDVNMDYL 63 >gi|116494509|ref|YP_806243.1| double-stranded beta-helix-like protein [Lactobacillus casei ATCC 334] gi|191637947|ref|YP_001987113.1| hypothetical protein LCABL_11700 [Lactobacillus casei BL23] gi|227535519|ref|ZP_03965568.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631268|ref|ZP_04674299.1| transcription regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116104659|gb|ABJ69801.1| Double-stranded beta-helix related protein [Lactobacillus casei ATCC 334] gi|190712249|emb|CAQ66255.1| Double-stranded beta-helix related protein [Lactobacillus casei BL23] gi|227186841|gb|EEI66908.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525733|gb|EEQ64734.1| transcription regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382018|gb|AEA53494.1| Electron transfer flavoprotein FAD-binding domain protein [Lactobacillus casei LC2W] gi|327385175|gb|AEA56649.1| Electron transfer flavoprotein FAD-binding domain protein [Lactobacillus casei BD-II] Length = 179 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+RI+D+R N TQ+E+ + + ++ E+ S S+ + + S Sbjct: 2 EIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPADF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E D ++ G RLK + Sbjct: 62 FREEPKDSLVYHEDDQVTYLDEEKGYRLKWL 92 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+R++ +R K ++Q E G+ + +S E ++ P ++ I V + Sbjct: 1 MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPAD 60 Query: 172 IYFGD 176 + + Sbjct: 61 FFREE 65 >gi|227523243|ref|ZP_03953292.1| DNA-binding protein [Lactobacillus hilgardii ATCC 8290] gi|227089630|gb|EEI24942.1| DNA-binding protein [Lactobacillus hilgardii ATCC 8290] Length = 369 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 37/78 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I ++RK N+K+Q+++A +++V+ +ENG S I + ++ S D + Sbjct: 5 IHLNIANLRKQNHKSQQQLADFLGITKASVSKWENGQTSPDISSLPLIAAYFDTSIDHLL 64 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + E K L Sbjct: 65 GYDAQLSKSEIERLYKTL 82 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + ++RK SQ + LG+ +++S +E G+T P+I I +D + D Sbjct: 8 NIANLRKQNHKSQQQLADFLGITKASVSKWENGQTSPDISSLPLIAAYFDTSIDHLLGYD 67 Query: 177 EVIVPKSIKR 186 + I+R Sbjct: 68 AQLSKSEIER 77 >gi|257414283|ref|ZP_04745847.2| putative transcriptional regulator [Roseburia intestinalis L1-82] gi|257200563|gb|EEU98847.1| putative transcriptional regulator [Roseburia intestinalis L1-82] Length = 107 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK++R A T++++A A+ E G+ I + + + IS D++ Sbjct: 9 GERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHISLDYLVC 68 Query: 93 G 93 G Sbjct: 69 G 69 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 D G R+K +R + M++ + + +G+ L E G +I I ++ Sbjct: 1 MYYDIVNSGERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFH 60 Query: 167 KHLDWIYFGDE 177 LD++ G E Sbjct: 61 ISLDYLVCGCE 71 >gi|154483937|ref|ZP_02026385.1| hypothetical protein EUBVEN_01644 [Eubacterium ventriosum ATCC 27560] gi|149734979|gb|EDM50865.1| hypothetical protein EUBVEN_01644 [Eubacterium ventriosum ATCC 27560] Length = 98 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K+ G RIK++RKA TQ+ A N + E G ST+I + + + + + D+ Sbjct: 6 KESGKRIKELRKAKGYTQESFAEELNISHRTYSGIELGNHSTTIETFVEMASILDTTLDY 65 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + G DV +K+ I + Sbjct: 66 LIIGRKSSELLTDVPEEKKELAMKILKGI 94 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + G R+K +RK KG +Q F + L + + T S E G I+ ++ + Sbjct: 1 MNYNVKESGKRIKELRKAKGYTQESFAEELNISHRTYSGIELGNHSTTIETFVEMASILD 60 Query: 167 KHLDWIYFG 175 LD++ G Sbjct: 61 TTLDYLIIG 69 >gi|148378605|ref|YP_001253146.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153931517|ref|YP_001382992.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937449|ref|YP_001386538.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288089|emb|CAL82157.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152927561|gb|ABS33061.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933363|gb|ABS38862.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 130 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +RK +Q E+ N ++ +E G + + + L + +EIS D + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELV 62 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +L S+RK KG+SQ E G L + T+S +E G T PE++ + + LD Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + + + N+ Sbjct: 61 LVMDVKAKESTKTEPLVMNR 80 >gi|78049702|ref|YP_365877.1| putative DNA binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927530|ref|ZP_08188768.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|78038132|emb|CAJ25877.1| putative DNA binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542123|gb|EGD13627.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 66 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R++++R+AN +Q E+ +N E G S+ A + + S + ++ Sbjct: 3 SRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVFLY 62 Query: 94 EV 95 E Sbjct: 63 ED 64 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 37/64 (57%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +R++ +R+ G SQ E G+ LG+ T++ E G+ P + A +I ++ + ++ ++ Sbjct: 1 MNSRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 Query: 174 FGDE 177 ++ Sbjct: 61 LYED 64 >gi|332298423|ref|YP_004440345.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181526|gb|AEE17214.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 195 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I +RK TQK++A G + AV+ +E G + L + + + Sbjct: 7 GNLIARLRKERGMTQKQLADGLFVSDKAVSKWETGAGCPDVTLLSALSRILGVDTAALLN 66 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGAR 117 G++ + + N K+L Y Sbjct: 67 GDL-EPNDRNGGNMKKLSFYVCPDC 90 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G + +RK++GM+Q + L + + +S +E G P++ + ++ Sbjct: 1 MDCRKTGNLIARLRKERGMTQKQLADGLFVSDKAVSKWETGAGCPDVTLLSALSRILGVD 60 Query: 169 LDWIYFGD 176 + GD Sbjct: 61 TAALLNGD 68 >gi|329298588|ref|ZP_08255924.1| LexA repressor [Plautia stali symbiont] Length = 211 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RKA TQ+ +A G AV+ +E ++ L L + S WI D Sbjct: 8 GERIRQRRKALKLTQQALANGIGVSHVAVSQWEKEETVPRGKHLLRLAELLQCSAAWIID 67 Query: 93 GEVIDR 98 G+ Sbjct: 68 GDGQPF 73 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + + G R++ RK ++Q +G+ + +S +E+ T+P K ++ ++ + Sbjct: 1 MMKKESGGERIRQRRKALKLTQQALANGIGVSHVAVSQWEKEETVPRGKHLLRLAELLQC 60 Query: 168 HLDWIYFGD 176 WI GD Sbjct: 61 SAAWIIDGD 69 >gi|302670002|ref|YP_003829962.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394475|gb|ADL33380.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 174 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK+ RKA + +Q E+A + V +E+G SI + N IS + Sbjct: 6 DIGNRIKEARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGVLNEIANNLNISPAEL 65 Query: 91 YDGEVIDRRYEDVTN 105 + + +++ Sbjct: 66 IGYQKKNITLNTLSD 80 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K RK + +SQ E LG T+ YE G P I +I + Sbjct: 9 NRIKEARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGVLNEIANNLNISPAELI 66 >gi|294783001|ref|ZP_06748325.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] gi|294479879|gb|EFG27656.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] Length = 184 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 32/82 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K R + +E+A + S ++ E G S SI + + ++ ++ Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + E D R + + Sbjct: 63 EDEEDDIRNIEFVKAANVRYIE 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R DKGMS E + + S LS EQG+ P I+ +KI + + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 172 IYFGDEV 178 + +E Sbjct: 61 LIEDEED 67 >gi|212695792|ref|ZP_03303920.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM 7454] gi|212677225|gb|EEB36832.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM 7454] Length = 236 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Y K+VG IK RK T +E+A + +S ++ +ENG I + + +I Sbjct: 4 DYNKEVGKLIKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIR 63 Query: 87 FDWIYDGEVIDRRYEDVTN 105 D + + ++ N Sbjct: 64 VDKLLYNDDQILISDESKN 82 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ RK + ++ E K + STLS YE G+ +I I +D + + D+ Sbjct: 13 IKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVDKLLYNDD 72 Query: 178 VIVPKSIKR 186 I+ + Sbjct: 73 QILISDESK 81 >gi|25010546|ref|NP_734941.1| hypothetical protein gbs0475 [Streptococcus agalactiae NEM316] gi|23094899|emb|CAD46119.1| Unknown [Streptococcus agalactiae NEM316] Length = 112 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 7/93 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +R TQKE+A + + +E G + + L N + +S D++ Sbjct: 4 EKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYLL-- 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 D+ N LD + LK G Sbjct: 62 -----GNTDLKNPNDLDIEKVKQSLKKSLGYNG 89 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 41/84 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +LK++R + G++Q E K++ ++ +E+G P+ K K+ V D++ Sbjct: 1 MLPEKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKS 196 ++ P + K QS KKS Sbjct: 61 LGNTDLKNPNDLDIEKVKQSLKKS 84 >gi|84687910|ref|ZP_01015777.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84664104|gb|EAQ10601.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 129 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 37/109 (33%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + G R+ R+A TQKE+A + +EN + + +S Sbjct: 8 EDNATFGDRLAGAREAAGLTQKELAKKLGIKTKTLASWENDVSEPRANRLQMVSGLLSVS 67 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 W+ GE + D A+ L+ ++ D + +L Sbjct: 68 LGWLLTGEGEGVDPPGTETEMSRDARALLLELREVQADITDATKRMARL 116 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G RL R+ G++Q E K LG+ TL+++E + P + + + L Sbjct: 9 DNATFGDRLAGAREAAGLTQKELAKKLGIKTKTLASWENDVSEPRANRLQMVSGLLSVSL 68 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSK 194 W+ G+ V + ++ ++ Sbjct: 69 GWLLTGEGEGVDPPGTETEMSRDAR 93 >gi|296104296|ref|YP_003614442.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058755|gb|ADF63493.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 190 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 39/96 (40%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + +++ + ++G +K +R A N + E+A + ++ ++ E+G + + + + Sbjct: 7 SDRLKRTYTNIGNNVKKLRIARNLSLNELAKLSGVSKATLSTLESGGSNPRVDTLDSIAS 66 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 ++ + Y + + + D + Sbjct: 67 ALRLTLGDLLGNNNERYPYIEKNSDYKGDYSQVMKF 102 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +R + +S E KL G+ +TLS E G + P + I + L + Sbjct: 19 NNVKKLRIARNLSLNELAKLSGVSKATLSTLESGGSNPRVDTLDSIASALRLTLGDLLGN 78 Query: 176 DEVIVPKSIKRAK 188 + P K + Sbjct: 79 NNERYPYIEKNSD 91 >gi|254975129|ref|ZP_05271601.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255314256|ref|ZP_05355839.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255516935|ref|ZP_05384611.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|255650038|ref|ZP_05396940.1| putative phage repressor [Clostridium difficile QCD-37x79] gi|306519573|ref|ZP_07405920.1| putative phage repressor [Clostridium difficile QCD-32g58] Length = 113 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 6/95 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN------QLESAVNLFENGMCSTSIRYALYLRNEYEI 85 G R K +R+ TQ E+ N +S ++ +EN I + +++ Sbjct: 4 FGERFKQLREEKKLTQDELVSKFNKVYFTSFNKSTISQYENNKRKPEINILENWADFFDV 63 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 S D++ ++ + V + + + Sbjct: 64 SIDYLLGRTLVRNHIDTVAAHRVNPHKDLPEEAQE 98 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 6/69 (8%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLG------MPNSTLSNYEQGRTIPEIKPARKIKQV 164 G R K +R++K ++Q E ST+S YE + PEI Sbjct: 1 MATFGERFKQLREEKKLTQDELVSKFNKVYFTSFNKSTISQYENNKRKPEINILENWADF 60 Query: 165 TKKHLDWIY 173 +D++ Sbjct: 61 FDVSIDYLL 69 >gi|163939634|ref|YP_001644518.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132657|ref|ZP_04261504.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] gi|229166679|ref|ZP_04294429.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|163861831|gb|ABY42890.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228616676|gb|EEK73751.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|228650784|gb|EEL06772.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] Length = 181 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEENNTDDLIVRSHKRKKM 84 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 + ++ K + Sbjct: 61 TFSFLLEENNTDDLIVRSHKRKK 83 >gi|326385587|ref|ZP_08207221.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209921|gb|EGD60704.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 227 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 30/84 (35%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 ++ + G ++D+R T ++ + S ++ EN S S + Sbjct: 3 AIMASRREDPETARFGHILRDLRTRLGLTLNDVGLKTGIPRSTLSKIENDKMSLSYDKIV 62 Query: 78 YLRNEYEISFDWIYDGEVIDRRYE 101 + + + ++ G+ + E Sbjct: 63 KISSALNVDISELFGGKHVPSPQE 86 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G L+ +R G++ + G G+P STLS E + KI + ++ Sbjct: 17 FGHILRDLRTRLGLTLNDVGLKTGIPRSTLSKIENDKMSLSYDKIVKISSALNVDISELF 76 Query: 174 FGDEVIVPKSIKR 186 G V P+ +++ Sbjct: 77 GGKHVPSPQEVRK 89 >gi|304403726|ref|ZP_07385388.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346704|gb|EFM12536.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 116 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI++IRK+ TQ ++A + S + E G + S+ + + ++ ++ Sbjct: 8 VGARIREIRKSKGLTQDQLAEISQFHYSYIGGVERGERNVSLENLAKIADALQVKLS-LF 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + + +K IR K + F Sbjct: 67 FDYEEPKSSAVDSELDEIIYLLSKRDVKQIRMVKNIMLEIF 107 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ IRK KG++Q + ++ S + E+G ++ KI + L ++F Sbjct: 10 ARIREIRKSKGLTQDQLAEISQFHYSYIGGVERGERNVSLENLAKIADALQVKLS-LFFD 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 E ++ SK+D K Sbjct: 69 YEEPKSSAVDSELDEIIYLLSKRDVK 94 >gi|293401719|ref|ZP_06645861.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304977|gb|EFE46224.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 139 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 27/69 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K +R +Q+ +A + ++ +E G+ + L +E+S + + Sbjct: 4 ENLKTLRIEKGMSQQFLADQLHVTRQTISKWERGLSVPDADMLIALSEMFEVSVSTLLNR 63 Query: 94 EVIDRRYED 102 V + + Sbjct: 64 SVNEEDTSE 72 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK++R +KGMSQ L + T+S +E+G ++P+ + ++ + + + Sbjct: 1 MFHENLKTLRIEKGMSQQFLADQLHVTRQTISKWERGLSVPDADMLIALSEMFEVSVSTL 60 Query: 173 YF---GDEVIVPKSIKRAKGNQSS 193 +E ++ K Q + Sbjct: 61 LNRSVNEEDTSESTLLAEKLEQLN 84 >gi|253577419|ref|ZP_04854735.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843219|gb|EES71251.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 76 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK RK TQ E+A +N EN ++ A L + D ++ Sbjct: 16 NKIKQFRKRLGLTQNELAAECGVTRQTINCVENNRYDPTLELAFKLAKILQTKVDELFIY 75 Query: 94 E 94 E Sbjct: 76 E 76 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K RK G++Q E G+ T++ E R P ++ A K+ ++ + +D ++ Sbjct: 14 MNNKIKQFRKRLGLTQNELAAECGVTRQTINCVENNRYDPTLELAFKLAKILQTKVDELF 73 Query: 174 FGD 176 + Sbjct: 74 IYE 76 >gi|42780467|ref|NP_977714.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987] gi|42736386|gb|AAS40322.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987] Length = 107 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E + D + + + + + Q + Sbjct: 62 LHDETTRENHLDSEWTQLVKDAMSSGVSKEQFREFLEFTKWKQDQ 106 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|134300270|ref|YP_001113766.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052970|gb|ABO50941.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 143 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 9/126 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++R TQKE+A N A++L+E G ++ + + + +S D++ Sbjct: 2 FAKRLIELRTREKLTQKELAAKLNLGRGALSLYEIGQREPDLQTVKNMADYFNVSADYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST---LSNYEQ 148 R N++ +++ KG + + L + + + +E+ Sbjct: 62 G-----RTKVMSGNERVQLDPLYVDMIRAWENKKGTP-EQMKEALEINHGYIELIKEWEK 115 Query: 149 GRTIPE 154 P Sbjct: 116 EGMSPN 121 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 33/93 (35%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL +R + ++Q E L + LS YE G+ P+++ + + D++ Sbjct: 1 MFAKRLIELRTREKLTQKELAAKLNLGRGALSLYEIGQREPDLQTVKNMADYFNVSADYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 +V+ + + K P Sbjct: 61 LGRTKVMSGNERVQLDPLYVDMIRAWENKKGTP 93 >gi|323483037|ref|ZP_08088431.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum WAL-14163] gi|323403666|gb|EGA95970.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum WAL-14163] Length = 129 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I + RK TQ E+A + AV+ +E + + L + IS D + + Sbjct: 3 IAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLSYPDVNSLPKLAGIFGISVDQLMQIKT 62 Query: 96 IDRRYEDVTNKKRLDPYAIGA 116 D D R+ P A Sbjct: 63 NDGPVNDRPVANRIIPIVFKA 83 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 31/56 (55%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RK+KGM+Q+E + +G+ + +S +E+ + P++ K+ + +D + Sbjct: 3 IAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLSYPDVNSLPKLAGIFGISVDQLM 58 >gi|317057326|ref|YP_004105793.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449595|gb|ADU23159.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 117 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R +Q+++A S V E S+ A+ + EIS D++ Sbjct: 13 VGERIRSRRVKLGLSQEQLAELCGITPSYVGHIERASRQLSLNTAISISTVLEISLDYLL 72 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L A+G R++S R G+SQ + +L G+ S + + E+ + A I Sbjct: 1 MNDGNNNLSLTAVGERIRSRRVKLGLSQEQLAELCGITPSYVGHIERASRQLSLNTAISI 60 Query: 162 KQVTKKHLDWIYF------GDEVIVPKSIKRAKGNQSSKKSK 197 V + LD++ GD ++ K + + SK Sbjct: 61 STVLEISLDYLLLDVKNENGDVGVLESISAELKNHSPEQVSK 102 >gi|293401684|ref|ZP_06645826.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304942|gb|EFE46189.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 201 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +++ +RK +QK+ A + +++ +EN S ++ + + + IS DW+ Sbjct: 7 LGDKLQYLRKTLTFSQKDFAEFLGIPQPSLSAYENNRNSPTVDVLINIAKKCNISLDWL 65 Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ +RK SQ +F + LG+P +LS YE R P + I + LDW+ Sbjct: 11 LQYLRKTLTFSQKDFAEFLGIPQPSLSAYENNRNSPTVDVLINIAKKCNISLDWL 65 >gi|300024625|ref|YP_003757236.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526446|gb|ADJ24915.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 217 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G +++ RK T E+A+ A ++ ENG S S+ L + Sbjct: 32 LEQAIGHQVRHHRKQAGLTVAELAVAAQISPGMLSKIENGQISPSLSTLQMLAAALNVPL 91 Query: 88 DWIY 91 ++ Sbjct: 92 TVLF 95 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 1/110 (0%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 I + E + + AIG +++ RK G++ E + LS E G Sbjct: 12 IAEPEPLATGSNAPGAAEHTLEQAIGHQVRHHRKQAGLTVAELAVAAQISPGMLSKIENG 71 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP-KSIKRAKGNQSSKKSKK 198 + P + + + L ++ E ++ +G ++ K Sbjct: 72 QISPSLSTLQMLAAALNVPLTVLFSSFEQRRDCSYVRSGEGVVIRRRGTK 121 >gi|197106394|ref|YP_002131771.1| transcriptional regulator,Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479814|gb|ACG79342.1| transcriptional regulator,Cro/CI family [Phenylobacterium zucineum HLK1] Length = 86 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q ++A +VN E G S+ A + + + + I++ Sbjct: 24 NRLKVLRAERDWSQGDLAERLGVSRQSVNAIETGKYDPSLPLAFRIARVFGLPIEAIFED 83 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ RLK +R ++ SQ + + LG+ +++ E G+ P + A +I +V ++ I Sbjct: 21 AMKNRLKVLRAERDWSQGDLAERLGVSRQSVNAIETGKYDPSLPLAFRIARVFGLPIEAI 80 Query: 173 Y 173 + Sbjct: 81 F 81 >gi|146339002|ref|YP_001204050.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146191808|emb|CAL75813.1| putative transcriptional regulator, XRE family [Bradyrhizobium sp. ORS278] Length = 481 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 13/130 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + IR+ +Q ++A G S VNL E S + L L Y++ + Sbjct: 11 VGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAEVYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQ 148 + R+ N+ DP L + +R + +L G+ ++ Y Sbjct: 70 -ATADEDRFFAELNEIFSDPLFRQIELPKQELR--------DLAELCPGVTHALQRLYAA 120 Query: 149 GRTIPEIKPA 158 + Sbjct: 121 YAEARRGETL 130 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + IR+ G+SQ + + LG+ S ++ E+ + + ++ +V L + DE Sbjct: 16 RRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAEVYDLDLRDLATADED 75 >gi|77919689|ref|YP_357504.1| transcriptional regulator Cro/CI family protein [Pelobacter carbinolicus DSM 2380] gi|77545772|gb|ABA89334.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 188 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + ++G ++K +R N+ TQ+E+ A+ + ++ EN SI + + + +S Sbjct: 2 ERNLNIGEKLKRLRMINSLTQEELGNRADLTKGYISQLENDTACPSIATLKDILDVFGVS 61 Query: 87 FDWIYDG 93 + Sbjct: 62 MQEFFTD 68 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 21/60 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +LK +R ++Q E G + +S E P I + I V + + Sbjct: 9 EKLKRLRMINSLTQEELGNRADLTKGYISQLENDTACPSIATLKDILDVFGVSMQEFFTD 68 >gi|22124180|ref|NP_667603.1| transcriptional repressor [Yersinia pestis KIM 10] gi|45443665|ref|NP_995204.1| putative transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|21956939|gb|AAM83854.1|AE013626_1 transcriptional repressor [Yersinia pestis KIM 10] gi|45438535|gb|AAS64081.1| putative transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] Length = 162 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + G R+K++RK +KTQKE+A S N +E+GM + L Sbjct: 37 QTEEQRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELL 96 Query: 84 EISFDWIYDGEVIDRRYEDVT 104 S D++ G + T Sbjct: 97 VTSIDYLLLGSSNETSSIRNT 117 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G RLK +RK + +Q E +G+ S + YE G IP + ++ +D++ Sbjct: 44 AFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYL 103 Query: 173 YFG 175 G Sbjct: 104 LLG 106 >gi|317056742|ref|YP_004105209.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449011|gb|ADU22575.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 146 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I+++R +Q+E+A AV+ +ENG + L +E+S + I Sbjct: 7 IRELRVKRGLSQEELAEKVYVTRQAVSRWENGDTVPNTETLKLLSVLFEVSINTIL 62 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ +R +G+SQ E + + + +S +E G T+P + + + + + ++ Sbjct: 1 MDNKNIIRELRVKRGLSQEELAEKVYVTRQAVSRWENGDTVPNTETLKLLSVLFEVSINT 60 Query: 172 IY 173 I Sbjct: 61 IL 62 >gi|257066290|ref|YP_003152546.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798170|gb|ACV28825.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 206 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 26/75 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R+ Q+ +A + ++++E S + +S D++ Sbjct: 3 LGAKLKQLREEQEMKQETLAQILGINRATISMYERNQRVPSTEILQKYTKTFNVSSDYLL 62 Query: 92 DGEVIDRRYEDVTNK 106 + Sbjct: 63 GNTHYKSNNINNEKY 77 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 36/62 (58%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++GA+LK +R+++ M Q ++LG+ +T+S YE+ + +P + +K + D+ Sbjct: 1 MSLGAKLKQLREEQEMKQETLAQILGINRATISMYERNQRVPSTEILQKYTKTFNVSSDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|227511053|ref|ZP_03941102.1| DNA-binding protein [Lactobacillus buchneri ATCC 11577] gi|227085795|gb|EEI21107.1| DNA-binding protein [Lactobacillus buchneri ATCC 11577] Length = 369 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 37/78 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I ++RK N+K+Q+++A +++V+ +ENG S I + ++ S D + Sbjct: 5 IHLNIANLRKQNHKSQQQLADFLGITKASVSKWENGQTSPDISSLPLIAAYFDTSIDHLL 64 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + E K L Sbjct: 65 GYDAQLSKSEIERLYKTL 82 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + ++RK SQ + LG+ +++S +E G+T P+I I +D + D Sbjct: 8 NIANLRKQNHKSQQQLADFLGITKASVSKWENGQTSPDISSLPLIAAYFDTSIDHLLGYD 67 Query: 177 EVIVPKSIKRAKGNQSSKKSKKD 199 + I+R ++ KK+ D Sbjct: 68 AQLSKSEIERL--YKTLKKAITD 88 >gi|90592681|ref|YP_529596.1| RepR; putative repressor [Clostridium phage phi CD119] gi|61697872|gb|AAX53417.1| RepR; putative repressor [Clostridium phage phi CD119] Length = 131 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 5/97 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++R T +E+ N + AV+ +E+ + + +++S D++ Sbjct: 5 FGNRLKNLRSEKRITGEELGKILNVTKVAVSNWESDRRFPDQDTLKNIADYFDVSVDYLL 64 Query: 92 DGEVIDRRYEDVTNKKR-----LDPYAIGARLKSIRK 123 D N ++ ++K + K Sbjct: 65 CRSDARNTINDKVNTSNTTFDIIENSDANKKVKELMK 101 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G RLK++R +K ++ E GK+L + +SN+E R P+ + I +D++ Sbjct: 5 FGNRLKNLRSEKRITGEELGKILNVTKVAVSNWESDRRFPDQDTLKNIADYFDVSVDYLL 64 Query: 174 FGDEVIVPKSIKRAKGNQS 192 + + K N + Sbjct: 65 CRSDARNTINDKVNTSNTT 83 >gi|301166893|emb|CBW26471.1| putative helix-turn-helix DNA-binding protein [Bacteriovorax marinus SJ] Length = 189 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 31/82 (37%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +I + + IK +R N TQK+++ + + + E+G + S+ + L Sbjct: 9 DINAFNSYISHNIKFLRAKRNYTQKQLSEVSGIPRTTLTNIESGEGNPSLSNIIKLAKAL 68 Query: 84 EISFDWIYDGEVIDRRYEDVTN 105 +S D + + Sbjct: 69 NVSIDLLVSAPRPETILLKENE 90 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I +K +R + +Q + ++ G+P +TL+N E G P + K+ + +D + Sbjct: 16 YISHNIKFLRAKRNYTQKQLSEVSGIPRTTLTNIESGEGNPSLSNIIKLAKALNVSIDLL 75 Query: 173 Y 173 Sbjct: 76 V 76 >gi|295106127|emb|CBL03670.1| looped-hinge helix DNA binding domain, AbrB family [Gordonibacter pamelaeae 7-10-1-b] Length = 140 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 6/103 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+ I+ R+A TQ+++A V +E G + A L ++S D + Sbjct: 2 IGSNIQSRRRAIGLTQEQLAAALAVARQTVAKWEAGDSVPDLANAGALAEALDVSLDALV 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI---GARL---KSIRKDKGMS 128 + K L ++ K R+ G+ Sbjct: 62 GYDPQGTMLPMPPRGKHLFGTVTVGERGQIVIPKQARELFGIE 104 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG+ ++S R+ G++Q + L + T++ +E G ++P++ A + + LD + Sbjct: 1 MIGSNIQSRRRAIGLTQEQLAAALAVARQTVAKWEAGDSVPDLANAGALAEALDVSLDAL 60 Query: 173 YFGD 176 D Sbjct: 61 VGYD 64 >gi|255527984|ref|ZP_05394823.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296186285|ref|ZP_06854689.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255508314|gb|EET84715.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049086|gb|EFG88516.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 184 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 35/94 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +G + +IR+ + ++A + + E G+ + ++ + Sbjct: 1 MKDFNLIIGKNLNNIRRQKGLSLDKVAELTGVSKGMLAQIEKGISNPTVTTLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +SF + + E + Y N K + + Sbjct: 61 VSFSYFMEEENREIVYVSHNNIKPILENDKKMMV 94 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L +IR+ KG+S + +L G+ L+ E+G + P + KI + Sbjct: 10 KNLNNIRRQKGLSLDKVAELTGVSKGMLAQIEKGISNPTVTTLWKIATGLNVSFSYFMEE 69 Query: 176 D 176 + Sbjct: 70 E 70 >gi|254500680|ref|ZP_05112831.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222436751|gb|EEE43430.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 183 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+ R+ +RK + E+A + + ++ E G S + L + +S Sbjct: 4 QDLAQRLIGLRKTKGLSLDELAEKSGISRATLSRIERGDTSPTAAALGRLATAFGVSVAD 63 Query: 90 IY 91 ++ Sbjct: 64 LF 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + RL +RK KG+S E + G+ +TLS E+G T P ++ Sbjct: 1 MNDQDLAQRLIGLRKTKGLSLDELAEKSGISRATLSRIERGDTSPTAAALGRLATAFGVS 60 Query: 169 LDWIY 173 + ++ Sbjct: 61 VADLF 65 >gi|171779683|ref|ZP_02920639.1| hypothetical protein STRINF_01520 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281785|gb|EDT47219.1| hypothetical protein STRINF_01520 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 68 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LK +R G++Q + +L+G+ T ++E+ +T P I A I +LD I F Sbjct: 3 KMTLKMLRVANGLNQKQAAELVGVSVDTWGHWERCQTEPTISMAYHIANKFNMNLDDIIF 62 Score = 57.7 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K +R AN QK+ A +E +I A ++ N++ ++ D I Sbjct: 6 LKMLRVANGLNQKQAAELVGVSVDTWGHWERCQTEPTISMAYHIANKFNMNLDDIIF 62 >gi|83720248|ref|YP_441361.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83654073|gb|ABC38136.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 224 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A A +S ++ E G+ SI AL L ++ + ++ Sbjct: 43 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 99 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G + D + ++ + + + RLK +RK KG + + G+ S LS E+G + Sbjct: 18 QGRLYDTKCHEIQSVFQKTFAVMTIRLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLS 77 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 +P I A K+ + + ++ ++ ++ RA Sbjct: 78 VPSIAVALKLSKALQVDVEQLFSESRDRELITVTRA 113 >gi|293570317|ref|ZP_06681377.1| DNA-binding protein [Enterococcus faecium E980] gi|291609596|gb|EFF38858.1| DNA-binding protein [Enterococcus faecium E980] Length = 370 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + ++RK TQ+ +A +++V+ +E G + L + +++S D + Sbjct: 6 LSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELL 65 Query: 92 DGEVI 96 Sbjct: 66 GYHPQ 70 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 40/77 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++ + ++RK KG++Q + +G+ +++S +E G+++P++ K+ Sbjct: 1 MEELSLSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVS 60 Query: 169 LDWIYFGDEVIVPKSIK 185 +D + + + I+ Sbjct: 61 VDELLGYHPQLTKEKIR 77 >gi|86360646|ref|YP_472534.1| hypothetical protein RHE_PE00372 [Rhizobium etli CFN 42] gi|86284748|gb|ABC93807.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 194 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ E+++Y +G RIK +R ++A + ++ E G ++ L + Sbjct: 6 LSNELQRY--AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIA 63 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + + D + + + V ++RL Sbjct: 64 MVFGVGLDHFFKADKEEPLIAIVRKEQRL 92 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 38/86 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 L YAIG R+K++R K + ++ G+ + LS E+G+ P + +I V Sbjct: 8 NELQRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFG 67 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQS 192 LD + D+ +I R + Sbjct: 68 VGLDHFFKADKEEPLIAIVRKEQRLK 93 >gi|327467932|gb|EGF13422.1| transcription regulator [Streptococcus sanguinis SK330] Length = 135 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|322805162|emb|CBZ02726.1| transcriptional regulator [Clostridium botulinum H04402 065] Length = 373 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 36/102 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A +++V+ +E+G I + L + IS D + Sbjct: 5 NIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDILFLPELATYFNISVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + +L + ++ Sbjct: 65 LGYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKY 106 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MRELNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDILFLPELATYFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + IK+ Sbjct: 61 VDELLGYSPQLTKEDIKK 78 >gi|154497828|ref|ZP_02036206.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC 29799] gi|150273326|gb|EDN00471.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC 29799] Length = 122 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 7/127 (5%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + +G R+K+ R+A TQ+ +A + ++ E G S+ L + Sbjct: 3 EKKAGNVQIGARVKEAREAAGLTQERLAELIDITAQYLSGVERGAVGLSVPVLQRLCSVL 62 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 +S D+I G VT + +K++ + Sbjct: 63 LVSSDYILTGNTETSDVLGVTARLS---KLPAEHIKNVENILDRYMEGIA----ISRQIQ 115 Query: 144 SNYEQGR 150 + E+ Sbjct: 116 MHDEKNG 122 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 36/84 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR+K R+ G++Q +L+ + LS E+G + +++ V D+I G Sbjct: 13 ARVKEAREAAGLTQERLAELIDITAQYLSGVERGAVGLSVPVLQRLCSVLLVSSDYILTG 72 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + A+ ++ + K+ Sbjct: 73 NTETSDVLGVTARLSKLPAEHIKN 96 >gi|148380996|ref|YP_001255537.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932705|ref|YP_001385366.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936433|ref|YP_001388773.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148290480|emb|CAL84608.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928749|gb|ABS34249.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932347|gb|ABS37846.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 136 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 16/122 (13%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ R+K R + Q E+A N + V+ +ENG L + + S D Sbjct: 1 MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD 60 Query: 89 WIY---------------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 +I DG + + + + +K + +D+ + Sbjct: 61 YILGRSENRNGIISKANIDGSNYEFELDKSIFPNGITREQMINYIKEL-EDRNKELEKEA 119 Query: 134 KL 135 ++ Sbjct: 120 EI 121 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RLK R K ++Q E K L + T+SN+E G IP+ K+ +D Sbjct: 1 MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 +I G I +A + S+ + + DK Sbjct: 61 YIL-GRSENRNGIISKANIDGSNYEFELDK 89 >gi|148266398|ref|YP_001233104.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146399898|gb|ABQ28531.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 355 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 3/103 (2%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++++R+ Q+ + A + +E G S++ + L + D + Sbjct: 3 LRELRELAGMKQEALGELAGVTRQTIAAWERGERQPSMQQVVKLCQILHVPIDVMLGTGN 62 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + + LKS+ K E KL G+ Sbjct: 63 VTEPVLLFRADAT---ETLSPALKSLLTRKAYDYAEIEKLAGV 102 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ GM Q G+L G+ T++ +E+G P ++ K+ Q+ +D + Sbjct: 1 MILRELRELAGMKQEALGELAGVTRQTIAAWERGERQPSMQQVVKLCQILHVPIDVMLGT 60 Query: 176 DEVIVPKSIKRAKGNQS 192 V P + RA ++ Sbjct: 61 GNVTEPVLLFRADATET 77 >gi|295093301|emb|CBK82392.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 255 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I ++R +Q ++A AV+ +ENG + L E ++S + + Sbjct: 7 ILELRTKRGLSQDDLAEKVMVTRQAVSRWENGETVPNTDTLKLLSKELDVSINTLL 62 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +R +G+SQ + + + + +S +E G T+P + + + ++ Sbjct: 1 METKDVILELRTKRGLSQDDLAEKVMVTRQAVSRWENGETVPNTDTLKLLSKELDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|229114819|ref|ZP_04244233.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3] gi|228668884|gb|EEL24312.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3] Length = 107 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQ 129 E + D + + K R+ +Q Sbjct: 62 LHDETEKEAHLDSEWTQLVKDAMNSGVSKEQFREFLEFTQ 101 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|167840953|ref|ZP_02467637.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia thailandensis MSMB43] Length = 191 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ T E A A + ++ E G + SI + + ++ + Sbjct: 15 IGNKMRALRQRLGLTLDEAAAAAGLSKPFLSQVERGRATPSITSLVGIARALGVTMQYFV 74 Query: 92 D 92 D Sbjct: 75 D 75 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++++R+ G++ E G+ LS E+GR P I I + + + Sbjct: 17 NKMRALRQRLGLTLDEAAAAAGLSKPFLSQVERGRATPSITSLVGIARALGVTMQYFV 74 >gi|317133164|ref|YP_004092478.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315471143|gb|ADU27747.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 197 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + I ++RK N TQ E+A + + AV+ +E I L + Sbjct: 1 MEDLKPVIAKNIVELRKLTNLTQAELAGKLHYTDKAVSKWERAESVPDISVLKELAVLFG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKR 108 ++ D++ + E + K+R Sbjct: 61 VTVDYLLESEHPRKAAGSSKQKRR 84 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 6/86 (6%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I + +RK ++Q E L + +S +E+ ++P+I +++ + +D++ Sbjct: 7 VIAKNIVELRKLTNLTQAELAGKLHYTDKAVSKWERAESVPDISVLKELAVLFGVTVDYL 66 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 + ++A G+ K+ + Sbjct: 67 L------ESEHPRKAAGSSKQKRRNR 86 >gi|268610412|ref|ZP_06144139.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 252 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I ++R +Q+++A AV+ +E G + L +++S + + Sbjct: 7 ILELRNKKGMSQEQLAEKVFVTRQAVSRWETGETQPNTETLKLLSQLFDVSINTLL 62 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +R KGMSQ + + + + +S +E G T P + + + Q+ ++ Sbjct: 1 METKEVILELRNKKGMSQEQLAEKVFVTRQAVSRWETGETQPNTETLKLLSQLFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|262283318|ref|ZP_06061084.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260809|gb|EEY79509.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 120 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 29/85 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N TQ ++A N + + +ENG S Y +S D++ Sbjct: 4 ERLKALRLEANLTQNDIAKSLNISQPSYAQWENGRRKPSSETLEKFAQFYNVSTDYLLGK 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 E + + L Sbjct: 64 SDYKNSDEIDLSTFEVLYRKTSKNL 88 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK++R + ++Q + K L + + + +E GR P + K Q D++ Sbjct: 1 MFPERLKALRLEANLTQNDIAKSLNISQPSYAQWENGRRKPSSETLEKFAQFYNVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + I + +K+ K+ Sbjct: 61 LGKSDYKNSDEIDLSTFEVLYRKTSKNLSDE 91 >gi|228984945|ref|ZP_04145114.1| hypothetical protein bthur0001_16480 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774768|gb|EEM23165.1| hypothetical protein bthur0001_16480 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 167 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 37 KDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 K +R++ +Q+++A + AV +EN I + L Y ++ D + G Sbjct: 14 KKLRESKGFSQEDVAKKISVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELIKGNQD 73 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K +R+ KG SQ + K + + + +E ++ P+I + ++ LD + G++ Sbjct: 14 KKLRESKGFSQEDVAKKISVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELIKGNQD 73 Query: 179 IVPKSIKRAKGNQSSK 194 K A+ K Sbjct: 74 FKKKIHSDAEDEDFEK 89 >gi|170016379|ref|YP_001727298.1| ABC transporter ATPase [Leuconostoc citreum KM20] gi|169803236|gb|ACA81854.1| ATPase component of ABC transporters with duplicated ATPase domains [Leuconostoc citreum KM20] Length = 299 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 29/73 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +R+ +Q+ +A +V+ +ENG I + L + + + D++ G Sbjct: 7 SQLSVLRQRKRISQEVLAQKLFVSRQSVSKWENGDAEPDIDKLISLSDIFAVDLDFLLAG 66 Query: 94 EVIDRRYEDVTNK 106 + Sbjct: 67 KQRTDDLILQLQH 79 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++L +R+ K +SQ + L + ++S +E G P+I + + LD+ Sbjct: 3 NVFKSQLSVLRQRKRISQEVLAQKLFVSRQSVSKWENGDAEPDIDKLISLSDIFAVDLDF 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + G + ++ ++S +K Sbjct: 63 LLAGKQRTDDLILQLQHVSKSFQK 86 >gi|146297633|ref|YP_001181404.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411209|gb|ABP68213.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 39/92 (42%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +K +G ++++ RK TQ+++A ++ ++ +ENG+ SI L N Y + Sbjct: 5 ELYKKIGQKLQEARKKAGLTQEQVADYLGVNKTLISYYENGIREISIATLRNLSNLYGYT 64 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + I+ + + + Sbjct: 65 MSYFLSDDEINEPTISFSFRADELKKEDLEVI 96 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +L+ RK G++Q + LG+ + +S YE G I R + + + Sbjct: 7 YKKIGQKLQEARKKAGLTQEQVADYLGVNKTLISYYENGIREISIATLRNLSNLYGYTMS 66 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + DE+ P + ++ K+ Sbjct: 67 YFLSDDEINEPTISFSFRADELKKE 91 >gi|15671989|ref|NP_266163.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281490506|ref|YP_003352486.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12722843|gb|AAK04105.1|AE006240_3 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281374324|gb|ADA63857.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 107 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RK N +Q+E+A + +++ +E G + + L ++ S D + Sbjct: 2 EISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTDQIILLSEIFDCSLDTL 61 Query: 91 YDGEVIDRRYED 102 G+ Sbjct: 62 LKGDKKMEEKAK 73 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +K RK K +SQ E K + + ++S +E G+++P + ++ LD Sbjct: 1 MEISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTDQIILLSEIFDCSLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD+ + K+ ++ K Sbjct: 61 LLKGDKKMEEKAKHEIDDKRTLK 83 >gi|329735768|gb|EGG72049.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] Length = 189 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V +IK R+ + +Q+ +A ++ +EN I L + +++S D + Sbjct: 2 NVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMFQLFKVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + + +++ K LD + + Sbjct: 62 VEDDLKNVQIKNIK--KELDFWTWMMII 87 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + + + T+SN+E ++ P+I + Q+ K LD Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMFQLFKVSLDE 60 Query: 172 IYFGD 176 + D Sbjct: 61 LVEDD 65 >gi|295980926|emb|CBJ57174.1| hypothetical protein [Streptococcus pneumoniae] Length = 74 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 34 TRIKDIRKANNKTQKEMAIG-ANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+D+R+ ++ TQ+ +A N SA + E+G SI + L + Y +S D++ Sbjct: 3 KRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRIISIDDLITLADFYNVSLDYLVG 62 Query: 93 GEVIDRRYEDVT 104 + Sbjct: 63 RVDNKEDHYSKK 74 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 1/74 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGK-LLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R++ +R+D ++Q K +L S S E G I I + LD++ Sbjct: 1 MLKRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRIISIDDLITLADFYNVSLDYL 60 Query: 173 YFGDEVIVPKSIKR 186 + K+ Sbjct: 61 VGRVDNKEDHYSKK 74 >gi|229017114|ref|ZP_04174030.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] gi|229023292|ref|ZP_04179801.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228737997|gb|EEL88484.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228744173|gb|EEL94259.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] Length = 181 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEETNTDDLIVRSHKRKKM 84 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 + ++ K + Sbjct: 61 TFSFLLEETNTDDLIVRSHKRKK 83 >gi|30019992|ref|NP_831623.1| transcriptional regulator [Bacillus cereus ATCC 14579] gi|31415744|ref|NP_852484.1| Transcriptional regulator [Bacillus phage phBC6A51] gi|29895537|gb|AAP08824.1| Transcriptional regulator [Bacillus cereus ATCC 14579] Length = 112 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+GT++K +R T +E+A + +S + +E + + L + ++ + D+I Sbjct: 2 DIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADIFDTTTDFI 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 G + + K LD Sbjct: 62 L-GRTENPNGLNFNVKDFLDQ 81 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK +R +G + E +G +ST S YE + P + ++ + D+ Sbjct: 1 MDIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADIFDTTTDF 60 Query: 172 IYFGDE 177 I E Sbjct: 61 ILGRTE 66 >gi|291460163|ref|ZP_06599553.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291417504|gb|EFE91223.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 166 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 3/96 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 W+ +G++I+ R+ + Q+++A + + ++ E G S+ L + N +S D Sbjct: 22 WEKIGSQIRKYRRREHLRQRDLAARISSTTNTISRLEGGGIGCSLECLLEICNALSVSPD 81 Query: 89 WIYDGEVIDR---RYEDVTNKKRLDPYAIGARLKSI 121 + G ++ N K L + ++ I Sbjct: 82 ALLFGNFSPESSSFHDYFMNMKELICQQVQENIEHI 117 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E D R+D IG++++ R+ + + Q + + +T+S E G Sbjct: 5 EQHDALRRGSARLHRIDWEKIGSQIRKYRRREHLRQRDLAARISSTTNTISRLEGGGIGC 64 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSS 193 ++ +I D + FG+ S N Sbjct: 65 SLECLLEICNALSVSPDALLFGNFSPESSSFHDYFMNMKE 104 >gi|229057010|ref|ZP_04196404.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603] gi|228720287|gb|EEL71863.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603] Length = 107 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQ 129 E + D + + K R+ +Q Sbjct: 62 LHDETTTESHLDSEWTQLVKDAMSSGVSKEQFREFLEFTQ 101 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDT 60 Query: 172 IYFGDEVIV 180 + + Sbjct: 61 LLHDETTTE 69 >gi|329890293|ref|ZP_08268636.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845594|gb|EGF95158.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 188 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R +Q+ +A A S V+L E+G S S+ L + IS + Sbjct: 12 IGPRLRALRDRLGLSQRALARKAGVPSSTVSLVESGRTSPSVGSLKRLLDAAGISLGDFF 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E + + D + + Sbjct: 72 SSEFETPTKYFYRHDELTDISRGEVSYRQL 101 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+++R G+SQ + G+P+ST+S E GRT P + +++ L + + Sbjct: 16 LRALRDRLGLSQRALARKAGVPSSTVSLVESGRTSPSVGSLKRLLDAAGISLGDFFSSEF 75 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 K R + + + Sbjct: 76 ETPTKYFYRHDELTDISRGEVSYR 99 >gi|325845864|ref|ZP_08169062.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481770|gb|EGC84802.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 236 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Y K+VG IK RK T +E+A + +S ++ +ENG I + + +I Sbjct: 4 DYNKEVGKLIKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIR 63 Query: 87 FDWIYDGEVIDRRYEDVTN 105 D + + ++ N Sbjct: 64 VDKLLYNDDQILISDESKN 82 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ RK + ++ E K + STLS YE G+ +I I +D + + D+ Sbjct: 13 IKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVDKLLYNDD 72 Query: 178 VIVPKSIKR 186 I+ + Sbjct: 73 QILISDESK 81 >gi|227821998|ref|YP_002825969.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227340998|gb|ACP25216.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 244 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 32/97 (32%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 Q+ I + +G ++ RK T ++A + ++ ENG S S+ Sbjct: 39 TQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVSDVAAATDISVGMLSKIENGNTSPSL 98 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 L + + G + V + +D Sbjct: 99 TTLQTLARALGVPITSFFRGFEEEHSAVFVKAGEGVD 135 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + ++++ AIG +++ RK G++ + + LS E G T P + Sbjct: 41 DPHAIRDTREKVLEVAIGHEVRAFRKKLGITVSDVAAATDISVGMLSKIENGNTSPSLTT 100 Query: 158 ARKIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + + G +E +K +G ++ + N Sbjct: 101 LQTLARALGVPITSFFRGFEEEHSAVFVKAGEGVDVERRGTRAGHQYN 148 >gi|259909520|ref|YP_002649876.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] gi|224965142|emb|CAX56674.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] Length = 136 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + G R+K++R +TQKE+A S N +E+GM + L + Sbjct: 10 QTEEQRRAFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELF 69 Query: 84 EISFDWIYDG 93 + D++ G Sbjct: 70 TTTIDYLLLG 79 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G RLK +R + +Q E L+G+ S + YE G IP + ++ ++ +D++ Sbjct: 17 AFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELFTTTIDYL 76 Query: 173 YFG 175 G Sbjct: 77 LLG 79 >gi|222081886|ref|YP_002541251.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726565|gb|ACM29654.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 227 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 28/88 (31%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 LQ+ + P+ +G ++ RK T ++A ++ ENG S Sbjct: 20 ALLQDPHAVREPKENNLEMAIGHEVRAYRKKLGITVTDLAASTGISLGMLSKIENGNISP 79 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRR 99 S+ L + + R Sbjct: 80 SLTTLQSLSRALGVPLTAFFRRYEEPRN 107 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 2/110 (1%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 D + L+ AIG +++ RK G++ + G+ LS E G P + Sbjct: 23 QDPHAVREPKENNLE-MAIGHEVRAYRKKLGITVTDLAASTGISLGMLSKIENGNISPSL 81 Query: 156 KPARKIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + L + +E +K +G + ++ + N Sbjct: 82 TTLQSLSRALGVPLTAFFRRYEEPRNAVFVKAGQGIELERRGTRAGHQYN 131 >gi|218290717|ref|ZP_03494799.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239255|gb|EED06454.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 77 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G+RI+ R++ T + +A + +++ E G S+ + + +IS D++ Sbjct: 8 KIGSRIRSARQSKGMTVESLANAIGISKGSLSAIETGKRPVSLLNLTRISDVLDISLDYL 67 Query: 91 Y 91 Sbjct: 68 V 68 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + LDP IG+R++S R+ KGM+ +G+ +LS E G+ + +I V Sbjct: 1 MRNLDPVKIGSRIRSARQSKGMTVESLANAIGISKGSLSAIETGKRPVSLLNLTRISDVL 60 Query: 166 KKHLDWIY 173 LD++ Sbjct: 61 DISLDYLV 68 >gi|169832055|ref|YP_001718037.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169638899|gb|ACA60405.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 196 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG I+ +R+ + +Q+ +A A ++ E G S S++ L +++ + Sbjct: 4 VGETIRRLREESGLSQRALARKAGLSSQYLSDIEVGRTSPSLKSLEKLAGALQVAPGQLL 63 Query: 92 DGEVI 96 G+ Sbjct: 64 QGQDR 68 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R++ G+SQ + G+ + LS+ E GRT P +K K+ + + G Sbjct: 6 ETIRRLREESGLSQRALARKAGLSSQYLSDIEVGRTSPSLKSLEKLAGALQVAPGQLLQG 65 Query: 176 DEVIVPKSIK 185 + + ++ Sbjct: 66 QDRFSSQVVE 75 >gi|170754290|ref|YP_001780243.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119502|gb|ACA43338.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 136 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +RK +Q E+ N ++ +E G + + + L + +EIS D + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELV 62 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +L S+RK KG+SQ E G L + T+S +E G T PE++ + + LD Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 172 IYFGDEVIVPKSIK 185 + +V +S+K Sbjct: 61 LVM--DVKAKESVK 72 >gi|270208634|ref|YP_003329405.1| predicted transcriptional regulator [Sinorhizobium meliloti] gi|76880908|gb|ABA56078.1| predicted transcriptional regulator [Sinorhizobium meliloti] Length = 194 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ E+++Y +G RIK +R ++A + ++ E G ++ L + Sbjct: 6 LSNELQRY--AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIA 63 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + + D ++ + + V ++RL Sbjct: 64 MVFGVGLDHFFNADKEEPLIAVVRKQQRL 92 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 L YAIG R+K++R K + ++ G+ + LS E+G+ P + +I V Sbjct: 8 NELQRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFG 67 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQS 192 LD + D+ ++ R + Sbjct: 68 VGLDHFFNADKEEPLIAVVRKQQRLK 93 >gi|148543259|ref|YP_001270629.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152670|ref|YP_001841011.1| hypothetical protein LAR_0015 [Lactobacillus reuteri JCM 1112] gi|227364322|ref|ZP_03848415.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325683521|ref|ZP_08163037.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148530293|gb|ABQ82292.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] gi|183224014|dbj|BAG24531.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227070635|gb|EEI08965.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324977871|gb|EGC14822.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 185 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +I K TQ+ +A + ++ +EN ++ L L Y +S D + Sbjct: 3 FGEQILSRCKELGLTQQNVADELHITRQTLSKWENNKSYPDLKLLLALSEIYHVSVDSLL 62 Query: 92 D 92 Sbjct: 63 R 63 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 33/69 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G ++ S K+ G++Q L + TLS +E ++ P++K + ++ +D Sbjct: 1 MSFGEQILSRCKELGLTQQNVADELHITRQTLSKWENNKSYPDLKLLLALSEIYHVSVDS 60 Query: 172 IYFGDEVIV 180 + ++ + Sbjct: 61 LLRENKDLT 69 >gi|84501262|ref|ZP_00999467.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanicola batsensis HTCC2597] gi|84390553|gb|EAQ03041.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanicola batsensis HTCC2597] Length = 213 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 TP Q ++G RI+ +R+A T + +A + S ++ E G+ + + L Sbjct: 13 TPPAEQGRAELGQRIRQLREARGLTLQTIADRSGLAISTISKIERGLMAPTYDRFSGLAR 72 Query: 82 EYEISFDWIY 91 + ++ Sbjct: 73 GLGVDVTHLF 82 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R+ +G++ G+ ST+S E+G P + + + ++ Sbjct: 25 QRIRQLREARGLTLQTIADRSGLAISTISKIERGLMAPTYDRFSGLARGLGVDVTHLF 82 >gi|328947544|ref|YP_004364881.1| hypothetical protein Tresu_0643 [Treponema succinifaciens DSM 2489] gi|328447868|gb|AEB13584.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 110 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + AR++ +R+ + +SQ +G+ S ++ +E +P + KI V Sbjct: 1 MGNEKFMARVRELRESRKLSQEALADKVGVTKSGVAMWETRGVVPRKETLEKICDVLGTT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 D++ EV V + + SK +KD Sbjct: 61 TDYLLGIGEVDVANAKINSIQRGLSKLGEKD 91 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 31/75 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R++ +Q+ +A +S V ++E + + + D++ Sbjct: 8 ARVRELRESRKLSQEALADKVGVTKSGVAMWETRGVVPRKETLEKICDVLGTTTDYLLGI 67 Query: 94 EVIDRRYEDVTNKKR 108 +D + + +R Sbjct: 68 GEVDVANAKINSIQR 82 >gi|324990830|gb|EGC22765.1| transcriptional regulator [Streptococcus sanguinis SK353] Length = 136 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I +RK N +Q+++A + +E G + Y+ L + +++S D + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDELV 61 Query: 92 DGEVI 96 E Sbjct: 62 HLESN 66 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 36/76 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I + +RK + +SQ + + +G+ T++ +E G ++P++ + ++ LD + Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60 Query: 173 YFGDEVIVPKSIKRAK 188 + ++ + K Sbjct: 61 VHLESNLLTTPSIKGK 76 >gi|320321358|gb|EFW77485.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 130 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +GTRIK +RK + TQ+ +A + + +E G S S+ + + Sbjct: 21 VDTLKKIIGTRIKALRKHRSLTQEALAEAMACETATIGRYERGEFSPSVEQIAKMADVLG 80 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYA 113 +S I R E V +++L A Sbjct: 81 VSPAEIIPSSYEISRQELVDLREKLFTVA 109 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG--ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 E + + +D R+K++RK + ++Q + + +T+ YE+ Sbjct: 3 VFWEGATMDHRQFNGEGLVDTLKKIIGTRIKALRKHRSLTQEALAEAMACETATIGRYER 62 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIY 173 G P ++ K+ V I Sbjct: 63 GEFSPSVEQIAKMADVLGVSPAEII 87 >gi|300702647|ref|YP_003744247.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299070308|emb|CBJ41600.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 113 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R A +K+Q+ +A A+ + ++ E G+ + SI L ++ ++ Sbjct: 24 LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSIETLANLCYALNVTLAELF 83 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+K R SQ + + +S+ E+G P I+ + L + Sbjct: 23 ALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSIETLANLCYALNVTLAEL 82 Query: 173 Y 173 + Sbjct: 83 F 83 >gi|283785296|ref|YP_003365161.1| DNA-binding protein [Citrobacter rodentium ICC168] gi|282948750|emb|CBG88345.1| putative DNA-binding protein [Citrobacter rodentium ICC168] Length = 191 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 31/96 (32%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G RI+ R++ + E+A A + ++ E G S + L + Sbjct: 5 EDSINQRIGVRIRIERESRGWSLTELAEKAGVSRAMIHKIERGESSPTATLLGRLSGAFG 64 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 IS + + + + L+ Sbjct: 65 ISMSTLIARAEMPEGKLLRAADQPVWRDPQSHYLRR 100 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 28/71 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ R+ +G S E + G+ + + E+G + P ++ + + E Sbjct: 16 IRIERESRGWSLTELAEKAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSTLIARAE 75 Query: 178 VIVPKSIKRAK 188 + K ++ A Sbjct: 76 MPEGKLLRAAD 86 >gi|118588049|ref|ZP_01545459.1| DNA binding protein, putative [Stappia aggregata IAM 12614] gi|118439671|gb|EAV46302.1| DNA binding protein, putative [Stappia aggregata IAM 12614] Length = 186 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R+A + + + + S V+ E G + ++ L L + F + Sbjct: 12 ARLKKARRAQGLSLEAVEKLSGVSRSMVSQIERGESNPTVATLLNLTRALNVDFAGLLGE 71 Query: 94 EVIDRRYEDVTNKKR--LDPYAIGARLKSI 121 E + R E V + LD G R++ + Sbjct: 72 ETAEDRVEIVHEHQTPALDRAGDGCRIRIL 101 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ +G+S KL G+ S +S E+G + P + + + + Sbjct: 11 PARLKKARRAQGLSLEAVEKLSGVSRSMVSQIERGESNPTVATLLNLTRALNVDFAGLL- 69 Query: 175 GDEVIVPKS 183 G+E + Sbjct: 70 GEETAEDRV 78 >gi|152988924|ref|YP_001351041.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964082|gb|ABR86107.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 199 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI+ +RK T +A + ++ E + SI + ++ W + Sbjct: 20 LGTRIRGLRKRRGLTLAALAAQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWFF 79 Query: 92 DGE 94 E Sbjct: 80 ASE 82 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 34/87 (39%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + D T+ R + + +G R++ +RK +G++ + +S E+ P Sbjct: 1 MPRPSTPDATDTPRSETHFLGTRIRGLRKRRGLTLAALAAQSELTAGYISQLERNLAYPS 60 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVP 181 I I + + W + + + P Sbjct: 61 IPALFNIARSLGVTIQWFFASEAAVDP 87 >gi|91779338|ref|YP_554546.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|296157048|ref|ZP_06839885.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|91691998|gb|ABE35196.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia xenovorans LB400] gi|295892934|gb|EFG72715.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 190 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 36/80 (45%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ T + ++G++I+ +R+ +T + A A + ++ E G+ S SI Sbjct: 1 MVTTIQKSNPALEIGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAG 60 Query: 79 LRNEYEISFDWIYDGEVIDR 98 + N ++ + D +R Sbjct: 61 IANALGVTVQYFVDTPSEER 80 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG++++++R+ + + G+ LS E+G P I I + + Sbjct: 12 LEIGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIANALGVTVQY 71 Query: 172 IY 173 Sbjct: 72 FV 73 >gi|77919057|ref|YP_356872.1| xenobiotic response element family transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77545140|gb|ABA88702.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 188 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 59/152 (38%), Gaps = 5/152 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K IR NN T + ++ A+ + ++ E G+ + S+ L L + +E S ++ Sbjct: 7 IGKKLKAIRLKNNLTIQVVSERAHVSANMISRIERGLTTPSVEILLRLGSVFEKSINYFV 66 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + E ++ + L++ G+ +F + ++ + Sbjct: 67 EEVENTHEIVHSRPGERSCTVFDDNQNLRTESFTAGLRDPQFTSFYCVIKPHGTSGDADM 126 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPK 182 P + V K L+ G+ ++ + Sbjct: 127 FHPGDELLY----VLKGRLEMTVAGETFLIEE 154 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +LK+IR ++ + + + +S E+G T P ++ ++ V +K +++ Sbjct: 9 KKLKAIRLKNNLTIQVVSERAHVSANMISRIERGLTTPSVEILLRLGSVFEKSINYFV-- 66 Query: 176 DEVIVPKSIKRAKGNQSS 193 +EV I ++ + S Sbjct: 67 EEVENTHEIVHSRPGERS 84 >gi|323693921|ref|ZP_08108108.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323502018|gb|EGB17893.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 192 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I +RK TQ+++A + + AV+ +E G+ + L + ++ + I + Sbjct: 7 GALISSLRKEKGYTQRQLAEALHVSDKAVSKWECGLGCPDVSLLGALSSVLGVNIEKILE 66 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGAR 117 GE+ + ED N KR+ Y Sbjct: 67 GEL-EPNSEDGGNMKRIKFYICPDC 90 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D GA + S+RK+KG +Q + + L + + +S +E G P++ + V + Sbjct: 1 MDNDKSGALISSLRKEKGYTQRQLAEALHVSDKAVSKWECGLGCPDVSLLGALSSVLGVN 60 Query: 169 LDWIYFGD 176 ++ I G+ Sbjct: 61 IEKILEGE 68 >gi|323486288|ref|ZP_08091614.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323400398|gb|EGA92770.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 192 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I +RK TQ+++A + + AV+ +E G+ + L + ++ + I + Sbjct: 7 GALISSLRKEKGYTQRQLAEALHVSDKAVSKWECGLGCPDVSLLGALSSVLGVNIEKILE 66 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGAR 117 GE+ + ED N KR+ Y Sbjct: 67 GEL-EPNSEDGGNMKRIKFYICPDC 90 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D GA + S+RK+KG +Q + + L + + +S +E G P++ + V + Sbjct: 1 MDNDKSGALISSLRKEKGYTQRQLAEALHVSDKAVSKWECGLGCPDVSLLGALSSVLGVN 60 Query: 169 LDWIYFGD 176 ++ I G+ Sbjct: 61 IEKILEGE 68 >gi|262197634|ref|YP_003268843.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080981|gb|ACY16950.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 147 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 24/79 (30%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ K +G+ + R A TQ++ A + E G S+ + + Sbjct: 3 KELAKSIGSAARQARTALGLTQEDAAERLDVSVEFYARIERGNSLPSVPTLARIAAVLGV 62 Query: 86 SFDWIYDGEVIDRRYEDVT 104 S D + Sbjct: 63 SADALLGRAPFAPGASATW 81 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R G++Q + + L + + E+G ++P + +I V D + Sbjct: 14 RQARTALGLTQEDAAERLDVSVEFYARIERGNSLPSVPTLARIAAVLGVSADALL 68 >gi|15807441|ref|NP_296174.1| PbsX family transcriptional regulator [Deinococcus radiodurans R1] gi|6460274|gb|AAF11998.1|AE002075_2 transcriptional regulator, PbsX family [Deinococcus radiodurans R1] Length = 64 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +R +N TQ ++A + +N E G S+ A L + + + I+ Sbjct: 3 NRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYDPSLPLAFKLARLFGLRIEDIFQD 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R + ++Q + L + T++ E G+ P + A K+ ++ ++ I+ Sbjct: 1 MKNRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYDPSLPLAFKLARLFGLRIEDIF 60 Query: 174 FGD 176 + Sbjct: 61 QDE 63 >gi|210622425|ref|ZP_03293157.1| hypothetical protein CLOHIR_01105 [Clostridium hiranonis DSM 13275] gi|210154241|gb|EEA85247.1| hypothetical protein CLOHIR_01105 [Clostridium hiranonis DSM 13275] Length = 66 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++KS R M+Q + + +G+ T+S E+G P I +I +V K LD Sbjct: 1 MPKNLKIKSARAALDMTQKDLAEKVGVTRQTISAIEKGDYNPTINLCIQICKVLGKTLDE 60 Query: 172 IYFGDE 177 +++ +E Sbjct: 61 LFWDNE 66 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +IK R A + TQK++A ++ E G + +I + + + D ++ Sbjct: 6 KIKSARAALDMTQKDLAEKVGVTRQTISAIEKGDYNPTINLCIQICKVLGKTLDELF 62 >gi|169827339|ref|YP_001697497.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168991827|gb|ACA39367.1| transcriptional regulator (phage-related) [Lysinibacillus sphaericus C3-41] Length = 118 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 34/74 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R+K++RK TQ ++A + ESA +E G SI L +Y++S +I Sbjct: 3 NVSQRLKELRKEAKLTQADVAKFLSISESAYGYYEQGRNEISIGSVQKLAEKYDVSVAYI 62 Query: 91 YDGEVIDRRYEDVT 104 + ++ Sbjct: 63 LCETDEKQPFDKDE 76 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +RK+ ++Q + K L + S YEQGR I +K+ + + Sbjct: 1 MSNVSQRLKELRKEAKLTQADVAKFLSISESAYGYYEQGRNEISIGSVQKLAEKYDVSVA 60 Query: 171 WIYFGDEVIVP 181 +I + P Sbjct: 61 YILCETDEKQP 71 >gi|167463790|ref|ZP_02328879.1| Transcriptional regulator, xre family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 112 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RIKD+R TQ +MA + EN + + E ++S D++ Sbjct: 2 NVGDRIKDLRIKKKLTQSDMAKKIGTGRANYAHMENNRVEIKHEFLQAIAKELDVSTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAI 114 G + KK LD I Sbjct: 62 L-GNSNSTVSDAHDLKKFLDQNMI 84 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+K +R K ++Q + K +G + ++ E R + + + I + D+ Sbjct: 1 MNVGDRIKDLRIKKKLTQSDMAKKIGTGRANYAHMENNRVEIKHEFLQAIAKELDVSTDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|86751307|ref|YP_487803.1| XRE family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574335|gb|ABD08892.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris HaA2] Length = 481 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 13/130 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + IR+ +Q ++A G S +NL E + + L L Y++ + Sbjct: 11 VGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQ 148 + R+ N+ DP L + +R + +L G+ +S Y Sbjct: 70 -ATADEDRFFAELNEIFSDPLFRQIDLPKQELR--------DLAELCPGVTHSLQRLYAA 120 Query: 149 GRTIPEIKPA 158 + Sbjct: 121 YTEARRGETL 130 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + IR+ G+SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRDLATADED 75 >gi|15789706|ref|NP_279530.1| hypothetical protein VNG0471C [Halobacterium sp. NRC-1] gi|169235420|ref|YP_001688620.1| transcription regulator-like protein [Halobacterium salinarum R1] gi|10580078|gb|AAG19010.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167726486|emb|CAP13271.1| transcription regulator homolog [Halobacterium salinarum R1] Length = 66 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ R + +Q ++A +N E SI A L + ++ + ++D Sbjct: 3 NHVRERRGEADLSQADLAAAVGVTRQTINAIERDRYDPSIELAFKLADFFDCRIEDLFDP 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ R + +SQ + +G+ T++ E+ R P I+ A K+ ++ ++ Sbjct: 1 MRNHVRERRGEADLSQADLAAAVGVTRQTINAIERDRYDPSIELAFKLADFFDCRIEDLF 60 Query: 174 FGD 176 + Sbjct: 61 DPE 63 >gi|329940155|ref|ZP_08289437.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] gi|329300981|gb|EGG44877.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] Length = 509 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE- 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 3 DDYLVRIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDS 62 Query: 85 --ISFDW 89 +S + Sbjct: 63 EIVSLGY 69 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|328955378|ref|YP_004372711.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455702|gb|AEB06896.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 210 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 26/75 (34%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +I + R A +Q E+A + + +E+G + L + ++ ++ E Sbjct: 5 KISEARHAKGWSQAELAKRIGTTQQQIARYESGDNDVKSSVLIKLSSALGVTISYLLGLE 64 Query: 95 VIDRRYEDVTNKKRL 109 + + Sbjct: 65 NTVAAQPAPSFPIPV 79 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ R KG SQ E K +G ++ YE G + K+ + ++ Sbjct: 1 MAAYKISEARHAKGWSQAELAKRIGTTQQQIARYESGDNDVKSSVLIKLSSALGVTISYL 60 Query: 173 YFGDEVIVPKS 183 + + + Sbjct: 61 LGLENTVAAQP 71 >gi|229160333|ref|ZP_04288331.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803] gi|228623057|gb|EEK79885.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803] Length = 107 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + + Q Sbjct: 62 LHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQDH 106 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|257791197|ref|YP_003181803.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317488068|ref|ZP_07946646.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325831244|ref|ZP_08164536.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475094|gb|ACV55414.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912819|gb|EFV34350.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325486845|gb|EGC89292.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 147 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + IRK N TQ+++A AV+ +ENG + I + ++ + Sbjct: 3 IGDVLVRIRKERNLTQEDLARKLYVTRQAVSRWENGETTPGIDMCKLIAATCDVPVALLL 62 Query: 92 D 92 + Sbjct: 63 E 63 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG L IRK++ ++Q + + L + +S +E G T P I + I + Sbjct: 1 MAIGDVLVRIRKERNLTQEDLARKLYVTRQAVSRWENGETTPGIDMCKLIAATCDVPVAL 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|225405510|ref|ZP_03760699.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme DSM 15981] gi|225042963|gb|EEG53209.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme DSM 15981] Length = 63 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 +RK +Q+E A V+ ENG + S+ A + + ++ + + ++ + D Sbjct: 3 QLRKEMGLSQEEFARALRVSRQTVSSIENGKYNPSLELAFQIADFFQKTIEELFLWKEND 62 Query: 98 R 98 + Sbjct: 63 Q 63 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 33/58 (56%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +RK+ G+SQ EF + L + T+S+ E G+ P ++ A +I +K ++ ++ E Sbjct: 3 QLRKEMGLSQEEFARALRVSRQTVSSIENGKYNPSLELAFQIADFFQKTIEELFLWKE 60 >gi|89893443|ref|YP_516930.1| hypothetical protein DSY0697 [Desulfitobacterium hafniense Y51] gi|219666722|ref|YP_002457157.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332891|dbj|BAE82486.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536982|gb|ACL18721.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 71 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 29/58 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++D+R+ + TQ+++A ++ + +E+G + L Y+ S D++ Sbjct: 4 QRLRDLREDRDLTQQDLADLLKVSQATYSRYESGALDIPSTSLIKLARFYKTSVDYLL 61 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL+ +R+D+ ++Q + LL + +T S YE G K+ + K +D++ Sbjct: 1 MMYQRLRDLREDRDLTQQDLADLLKVSQATYSRYESGALDIPSTSLIKLARFYKTSVDYL 60 Query: 173 YFGDEVIVPKS 183 P Sbjct: 61 LGLTNDRKPSR 71 >gi|251789530|ref|YP_003004251.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538151|gb|ACT06772.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + + ++K++G RI RK TQ+++A + + +E G S L Sbjct: 11 AMNTKDEPFFKELGARIALARKELQLTQQQLAEQLGIAQQTMAHYEGGRLKVSASLLPQL 70 Query: 80 RNEYEISFDWIY 91 +S D + Sbjct: 71 ATILNLSLDELL 82 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +GAR+ RK+ ++Q + + LG+ T+++YE GR ++ + LD Sbjct: 20 FKELGARIALARKELQLTQQQLAEQLGIAQQTMAHYEGGRLKVSASLLPQLATILNLSLD 79 Query: 171 WIY 173 + Sbjct: 80 ELL 82 >gi|217980293|ref|YP_002364269.1| putative phage repressor [Shewanella baltica OS223] gi|217500930|gb|ACK48902.1| putative phage repressor [Shewanella baltica OS223] Length = 209 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K+ RK TQ ++A G + AV+ +E G L N EI +W+ Sbjct: 2 KLGDRLKNTRKIKGLTQLQIAEGVGVSKVAVSRWELGYSQPKGEKLNALCNLLEIDSNWL 61 Query: 91 YDGEVIDRRYEDVTNK 106 G + + + Sbjct: 62 LTGLKDECKNVAMIPF 77 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G RLK+ RK KG++Q++ + +G+ +S +E G + P+ + + + + +W Sbjct: 1 MKLGDRLKNTRKIKGLTQLQIAEGVGVSKVAVSRWELGYSQPKGEKLNALCNLLEIDSNW 60 Query: 172 IYFG--DE------VIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + G DE + S+ A G+ S + ++K + P Sbjct: 61 LLTGLKDECKNVAMIPFYSSVSIAAGSGSINEVTVEEKIAIP 102 >gi|117164576|emb|CAJ88122.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 200 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R A + +E+A A +S+++ ENG ++ + + + + D + + Sbjct: 17 KRIRALRVAQGWSLEELATRARLSQSSLSRIENGQRRLALDQLVTIARALDTTLDQLVET 76 Query: 94 EVIDRRYEDVTNKKR 108 D V + Sbjct: 77 AADDVITSPVIDSTH 91 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + S+LS E G+ + I + LD + Sbjct: 16 RKRIRALRVAQGWSLEELATRARLSQSSLSRIENGQRRLALDQLVTIARALDTTLDQLVE 75 Query: 175 --GDEVIVPKSIKRAKGNQ 191 D+VI I G+ Sbjct: 76 TAADDVITSPVIDSTHGSM 94 >gi|332687060|ref|YP_004456834.1| MerR family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332371069|dbj|BAK22025.1| transcriptional regulator, MerR family, near polyamine transporter [Melissococcus plutonius ATCC 35311] Length = 180 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 35/81 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R++++R + TQ+E+ + + ++ E + S S+ + +S + Sbjct: 2 EIGDRLRNLRIQRDLTQEELGERTDLTKGYISQLERNLSSPSMETFFTILEVLGVSPEEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 ++ + ++++ Sbjct: 62 FNEQTMEQKIVYQDKDNTHYY 82 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RL+++R + ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 1 MEIGDRLRNLRIQRDLTQEELGERTDLTKGYISQLERNLSSPSMETFFTILEVLGVSPEE 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 +F ++ + K + + K N Sbjct: 61 -FFNEQTMEQKIVYQDKDN 78 >gi|225017046|ref|ZP_03706238.1| hypothetical protein CLOSTMETH_00971 [Clostridium methylpentosum DSM 5476] gi|224950213|gb|EEG31422.1| hypothetical protein CLOSTMETH_00971 [Clostridium methylpentosum DSM 5476] Length = 103 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ + QK++A + A++ +EN + S+ L Y +S D++ Sbjct: 5 LGDKLVRLREGKHLQQKDIAKYSKVTPQAISGYENDTATPSLEVFSDLCAFYNVSADYLL 64 Query: 92 -DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + E +T+ ++ +LK +R+ Sbjct: 65 GYDKKQTLSVEGLTDDDIGLISSMITKLKEVRQ 97 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G +L +R+ K + Q + K + +S YE P ++ + D+ Sbjct: 3 YGLGDKLVRLREGKHLQQKDIAKYSKVTPQAISGYENDTATPSLEVFSDLCAFYNVSADY 62 Query: 172 IYFGDE 177 + D+ Sbjct: 63 LLGYDK 68 >gi|167755003|ref|ZP_02427130.1| hypothetical protein CLORAM_00507 [Clostridium ramosum DSM 1402] gi|167705053|gb|EDS19632.1| hypothetical protein CLORAM_00507 [Clostridium ramosum DSM 1402] Length = 221 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I RK TQ+E+A V +E+G ++ Y + L + I+ D + Sbjct: 2 IGDKIILYRKRKGLTQEELADLLEVSRQTVTKWESGSVLPNLDYIMGLSVIFGITIDNLV 61 Query: 92 DGEV--IDRRYEDVTNKKRLDPY 112 ++N +D Sbjct: 62 KDNDCAKQEIESKISNYNWIDFM 84 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++ RK KG++Q E LL + T++ +E G +P + + + +D + Sbjct: 1 MIGDKIILYRKRKGLTQEELADLLEVSRQTVTKWESGSVLPNLDYIMGLSVIFGITIDNL 60 Query: 173 YFGDEVIVPKSIKR 186 ++ + + Sbjct: 61 VKDNDCAKQEIESK 74 >gi|319934810|ref|ZP_08009255.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319810187|gb|EFW06549.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 155 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + +R A++ T + +A AV +ENG + ++ L N Y ++ D + Sbjct: 5 ISKNLMFLRNAHHFTLEYVAEKIGVSRQAVAKWENGESIPDLMNSMALANLYGVTIDDLV 64 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + Y K + Sbjct: 65 HHDHDKKGYAVPPVGKHI 82 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 26/65 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I L +R + + +G+ ++ +E G +IP++ + + + +D Sbjct: 3 NMISKNLMFLRNAHHFTLEYVAEKIGVSRQAVAKWENGESIPDLMNSMALANLYGVTIDD 62 Query: 172 IYFGD 176 + D Sbjct: 63 LVHHD 67 >gi|312136006|ref|YP_004003344.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311776057|gb|ADQ05544.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 177 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 10/87 (11%), Positives = 28/87 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +R T ++MA + +E S + + + + +S D++ Sbjct: 2 FGERLRMLRNEKGFTMQQMAEMLGITIGSWAKYERNEAEPSFDKLVKIADIFNVSVDFLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++ Sbjct: 62 GRTNVRNDKLGNNETNIKNYIVDIEKI 88 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL+ +R +KG + + ++LG+ + + YE+ P KI + +D++ Sbjct: 1 MFGERLRMLRNEKGFTMQQMAEMLGITIGSWAKYERNEAEPSFDKLVKIADIFNVSVDFL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 V K ++ + NP Sbjct: 61 LGRTNVRNDKLGNNETNIKNYIVDIEKIIIENP 93 >gi|302533187|ref|ZP_07285529.1| transcriptional regulatory protein [Streptomyces sp. C] gi|302442082|gb|EFL13898.1| transcriptional regulatory protein [Streptomyces sp. C] Length = 198 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 26/74 (35%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ Q + + +K R T +A A + E + S+ + L Sbjct: 1 MVSDLEQLTQALARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLA 60 Query: 81 NEYEISFDWIYDGE 94 + +S + D + Sbjct: 61 DALGVSITTLLDHD 74 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ LK R ++G + G+ + EQ RT P + K+ + + Sbjct: 11 ALARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTL 70 Query: 173 YFGD 176 D Sbjct: 71 LDHD 74 >gi|224542817|ref|ZP_03683356.1| hypothetical protein CATMIT_02006 [Catenibacterium mitsuokai DSM 15897] gi|224524261|gb|EEF93366.1| hypothetical protein CATMIT_02006 [Catenibacterium mitsuokai DSM 15897] Length = 177 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ R++ +RK T + +A+ +S ++ E G+ SI AL L + ++I + + Sbjct: 4 DMAARLRSLRKKYGWTIESLALQTGLTKSYLSKVERGLSVPSIAVALKLAHAFKIDVEQL 63 Query: 91 YDGE 94 + E Sbjct: 64 FSDE 67 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ARL+S+RK G + G+ S LS E+G ++P I A K+ K ++ ++ Sbjct: 5 MAARLRSLRKKYGWTIESLALQTGLTKSYLSKVERGLSVPSIAVALKLAHAFKIDVEQLF 64 Query: 174 FGD-EVIVPKSIKRAKGNQSSKKSKKDKK 201 + ++ RA +S K K Sbjct: 65 SDEAGERASITVVRAGERTPIARSGKASK 93 >gi|15675391|ref|NP_269565.1| putative repressor [Streptococcus phage 370.2] gi|19746441|ref|NP_607577.1| repressor [Streptococcus pyogenes MGAS8232] gi|21910679|ref|NP_664947.1| putative cI-like repressor - phage associated [Streptococcus pyogenes MGAS315] gi|28876313|ref|NP_795491.1| putative cI-like repressor [Streptococcus pyogenes phage 315.3] gi|28895631|ref|NP_801981.1| repressor (phage associated) [Streptococcus pyogenes SSI-1] gi|13622576|gb|AAK34286.1| putative repressor - phage associated [Streptococcus phage 370.2] gi|19748643|gb|AAL98076.1| putative repressor [Streptococcus pyogenes MGAS8232] gi|21904881|gb|AAM79750.1| putative cI-like repressor - phage-associated [Streptococcus pyogenes phage 315.3] gi|28810880|dbj|BAC63814.1| putative repressor (phage associated) [Streptococcus pyogenes SSI-1] Length = 251 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G RI+ +R+ N TQ E++ + V+ +E + L + ++ Sbjct: 1 MEQLGDRIRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKDLKKLAEIFNVTS 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D++ + N++ + +I +L+ R++K ++ Sbjct: 61 DYLLGLTDSKLGKITIQNEQP-EIVSIYNQLEQPRQEKVLN 100 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R+ + M+Q E ++LGM +T+S +E+ P+ K +K+ ++ D++ Sbjct: 8 IRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKDLKKLAEIFNVTSDYLL 64 >gi|323487530|ref|ZP_08092823.1| hypothetical protein HMPREF9474_04574 [Clostridium symbiosum WAL-14163] gi|323399131|gb|EGA91536.1| hypothetical protein HMPREF9474_04574 [Clostridium symbiosum WAL-14163] Length = 375 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I R+ TQ +A +++V+ +E G I L + + +S D + Sbjct: 5 NIARQIIRKRRERGITQAALAAHMGVSKASVSKWETGQSYPDITLLPGLASYFNMSIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + E RL Sbjct: 65 MGCSMQMTEEEIQELFSRL 83 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 35/78 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I ++ R+++G++Q +G+ +++S +E G++ P+I + Sbjct: 1 MKELNIARQIIRKRRERGITQAALAAHMGVSKASVSKWETGQSYPDITLLPGLASYFNMS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + I+ Sbjct: 61 IDELMGCSMQMTEEEIQE 78 >gi|322384426|ref|ZP_08058110.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150734|gb|EFX44196.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 151 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 19/135 (14%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK TQ E+A S ENG + S + + + + D++ Sbjct: 3 IGERIRQRRKLLQITQLEIAEQLKMGRSNFGHIENGRVTPSSSDLQKIADILQTNADYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ--------------IEFGKLLG 137 K +A K R K M Q + K+LG Sbjct: 63 GRTDDPSPQGAAAGLKTYPEWATS---KDKRDLKKMLQSPDVLYFDGIEFSDEDRAKMLG 119 Query: 138 MPNSTLSNYEQGRTI 152 + +E + Sbjct: 120 V--METIFWEAKKMN 132 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG R++ RK ++Q+E + L M S + E GR P +KI + + + D+ Sbjct: 1 MSIGERIRQRRKLLQITQLEIAEQLKMGRSNFGHIENGRVTPSSSDLQKIADILQTNADY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + P+ + KDK+ Sbjct: 61 LLGRTDDPSPQGAAAGLKTYPEWATSKDKRD 91 >gi|302540449|ref|ZP_07292791.1| cro/CI family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458067|gb|EFL21160.1| cro/CI family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 196 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 27/83 (32%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ Q + + +K R T +A A + E + S+ + L + Sbjct: 9 DLDQLTQSLARNLKRWRNERGYTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADAL 68 Query: 84 EISFDWIYDGEVIDRRYEDVTNK 106 +S + D E R + Sbjct: 69 GVSITTLLDYEQEARVRLVPPEQ 91 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 22/63 (34%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK R ++G + G+ + EQ RT P + K+ + + Sbjct: 19 RNLKRWRNERGYTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 78 Query: 176 DEV 178 ++ Sbjct: 79 EQE 81 >gi|217958856|ref|YP_002337404.1| transcriptional regulator SinR [Bacillus cereus AH187] gi|222095015|ref|YP_002529075.1| transcriptional regulator sinr [Bacillus cereus Q1] gi|229138068|ref|ZP_04266666.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26] gi|229172021|ref|ZP_04299586.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3] gi|217067870|gb|ACJ82120.1| transcriptional regulator SinR [Bacillus cereus AH187] gi|221239073|gb|ACM11783.1| transcriptional regulator SinR [Bacillus cereus Q1] gi|228611364|gb|EEK68621.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3] gi|228645413|gb|EEL01647.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26] gi|324325398|gb|ADY20658.1| transcriptional regulator SinR [Bacillus thuringiensis serovar finitimus YBT-020] Length = 107 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E + D + + + + + Q + Sbjct: 62 LHDETTKENHLDSEWTQLVKDAMSSGVSKEQFREFLEFTKWKQDQ 106 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|281355851|ref|ZP_06242345.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281318731|gb|EFB02751.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 609 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 12/141 (8%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I+ +R+A T+ ++A + + +ENG + +A L + ++ + Sbjct: 193 EQIRQLREALGYTRPQLADLIGCKKRTLASWENGERTARGEFAEKLLDLFK----KQFAA 248 Query: 94 EVIDRRYEDVTNKKRL--------DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 + D + E ++ R P A++++ R GMS E + LG+P +T N Sbjct: 249 QPKDPKLEQPSSVNRQSSTRKIYESPIMPVAKIRAGRAASGMSGREVAEALGVPVTTYKN 308 Query: 146 YEQGRTIPEIKPARKIKQVTK 166 +E G P K++ + Sbjct: 309 WESGNCRPSDIYIEKMQSLFG 329 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 66/187 (35%), Gaps = 27/187 (14%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC--STSIRY---------ALYLRN 81 G +K R + +Q+ M + +E+G + ++ A LR Sbjct: 88 GAHLKRFRLGRSLSQEAMGSLFDASAQKYARWESGRFALAPAVEERFREIQKWPATKLRT 147 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRL-----------DPYAIGARLKSIRKDKGMSQI 130 E + ++ G+ V ++ +++ +R+ G ++ Sbjct: 148 ELQERGHFLTTGKKTKMPKLPVQKEQPEVVVQPAPVTETPQVISKEQIRQLREALGYTRP 207 Query: 131 EFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGN 190 + L+G TL+++E G + A K+ + KK F + PK + + N Sbjct: 208 QLADLIGCKKRTLASWENGERTARGEFAEKLLDLFKKQ-----FAAQPKDPKLEQPSSVN 262 Query: 191 QSSKKSK 197 + S K Sbjct: 263 RQSSTRK 269 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 9/146 (6%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-------FD 88 I+ R + ++MA S +E + + Y Sbjct: 447 IRKFRLYLGLSGQQMADFLKVPHSVYKNWETKKRRVGDEFYDQVAPIYNEDKRTLKGMVS 506 Query: 89 WIYDGEVI--DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 G + K D G ++ IR G+ QI+ L + S+ ++ Sbjct: 507 KFLGGRKPGARNLGPQIQTKPNTDTRISGEEMRQIRLRFGIPQIQMAAFLKVDMSSYQHW 566 Query: 147 EQGRTIPEIKPARKIKQVTKKHLDWI 172 E K ++ +++ +D Sbjct: 567 EIKGRFVPQKYVDRVLEISDLSVDEF 592 Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 8/126 (6%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW--IY 91 +++D R + T+ ++A S +E+ + +R ++ D + Sbjct: 355 QQLRDFRHSIGVTRLKLANYLQIPLSQYQNWEHPSRCVPSSFQDKVRELMNMNPDEAKLM 414 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR------LKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 G + ++ + ++ R G+S + L +P+S N Sbjct: 415 LGITEATPPPAPAAEPVVEKTNVSRPAITCDDIRKFRLYLGLSGQQMADFLKVPHSVYKN 474 Query: 146 YEQGRT 151 +E + Sbjct: 475 WETKKR 480 >gi|30260597|ref|NP_842974.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Ames] gi|47525708|ref|YP_017057.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183446|ref|YP_026698.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Sterne] gi|65317861|ref|ZP_00390820.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165870666|ref|ZP_02215319.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0488] gi|167634821|ref|ZP_02393140.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0442] gi|167641287|ref|ZP_02399540.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0193] gi|170688997|ref|ZP_02880198.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0465] gi|170707081|ref|ZP_02897537.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0389] gi|177654547|ref|ZP_02936403.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0174] gi|190567496|ref|ZP_03020409.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813106|ref|YP_002813115.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602208|ref|YP_002865044.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0248] gi|254686823|ref|ZP_05150681.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724898|ref|ZP_05186681.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A1055] gi|254738951|ref|ZP_05196653.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744539|ref|ZP_05202218.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254756203|ref|ZP_05208232.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762022|ref|ZP_05213871.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30253965|gb|AAP24460.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Ames] gi|47500856|gb|AAT29532.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177373|gb|AAT52749.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Sterne] gi|164713500|gb|EDR19024.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0488] gi|167510795|gb|EDR86188.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0193] gi|167529895|gb|EDR92643.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0442] gi|170127859|gb|EDS96730.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0389] gi|170667098|gb|EDT17860.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0465] gi|172080659|gb|EDT65742.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0174] gi|190561283|gb|EDV15255.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227004469|gb|ACP14212.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229266616|gb|ACQ48253.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A0248] Length = 113 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +R TQ ++A N + + EN S+ + + + +S D++ Sbjct: 3 FGEKLKQLRGKR--TQGDVANLLNISRATYSHLENNRIEPSMTVLNSIADLFCVSTDYLL 60 Query: 92 DGEVIDRRYEDVTN 105 R E+ Sbjct: 61 GRSSDPRLTEEQDK 74 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + +Q + LL + +T S+ E R P + I + D+ Sbjct: 1 MTFGEKLKQLRGKR--TQGDVANLLNISRATYSHLENNRIEPSMTVLNSIADLFCVSTDY 58 Query: 172 IY 173 + Sbjct: 59 LL 60 >gi|296284711|ref|ZP_06862709.1| DNA-binding protein [Citromicrobium bathyomarinum JL354] Length = 81 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 32 VGTRIKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R++++R+ + +Q + + E G S S+ A + + + + + Sbjct: 7 ITNRVRELREEHDKMSQAALGEAVGVTRHTIIAIEQGRYSPSLETAFRIARLFGVGVEDV 66 Query: 91 YDGEVIDRRYED 102 + E D R Sbjct: 67 FGWEGGDPRRTP 78 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 114 IGARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++ +R++ MSQ G+ +G+ T+ EQGR P ++ A +I ++ ++ + Sbjct: 7 ITNRVRELREEHDKMSQAALGEAVGVTRHTIIAIEQGRYSPSLETAFRIARLFGVGVEDV 66 Query: 173 Y---FGDEVIVPKS 183 + GD P Sbjct: 67 FGWEGGDPRRTPSQ 80 >gi|254390574|ref|ZP_05005789.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294815656|ref|ZP_06774299.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|326444005|ref|ZP_08218739.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197704276|gb|EDY50088.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294328255|gb|EFG09898.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] Length = 509 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|57235098|ref|YP_182252.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57225546|gb|AAW40603.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 72 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G RI+D+RK +Q+E+A A + + E G + S++ + + Sbjct: 4 EKTIEQRFGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISRALK 63 Query: 85 ISFDWIYD 92 + ++ Sbjct: 64 VPVSDLFK 71 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R++ +RK G+SQ E G+ + L E+G P +K I + K + ++ Sbjct: 11 FGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISRALKVPVSDLF 70 Query: 174 F 174 Sbjct: 71 K 71 >gi|17547851|ref|NP_521253.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430156|emb|CAD16841.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 209 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++D+R A T +A S ++L E G S + L +S Sbjct: 16 INERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAASPTAVVLDKLAAGLGVSL 75 Query: 88 DWIYDGE 94 ++ GE Sbjct: 76 ASLFGGE 82 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 34/101 (33%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + + I R++ +R +G + G+ S +S E+G P Sbjct: 1 MPEYEDPPTADTDTGINERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAASPT 60 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 K+ L ++ G+ VP + Q+ + Sbjct: 61 AVVLDKLAAGLGVSLASLFGGEREGVPAQPLMRRAQQAQWR 101 >gi|90422889|ref|YP_531259.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104903|gb|ABD86940.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 480 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 13/130 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + IR+ +Q +MA G S +NL E + + L L Y++ + Sbjct: 11 VGPRFRRIRQQLGLSQTQMAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQ 148 + R+ N+ DP L + +R + +L G+ +S Y Sbjct: 70 -ATADEDRFFAELNEIFSDPLFRQIDLPKQELR--------DLAELCPGVTHSLQRLYAA 120 Query: 149 GRTIPEIKPA 158 + Sbjct: 121 YTEARRGETL 130 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + IR+ G+SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRIRQQLGLSQTQMAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRDLATADED 75 >gi|302343975|ref|YP_003808504.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301640588|gb|ADK85910.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 104 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 20 IITPEIRQYWKDVGTRI-------KDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 +++ E + +V R+ + +R T +++A S ++ E G S S Sbjct: 26 LVSGEEETFPAEVADRLLAGEHPVRVLRSHRGMTLQQVADACGVTNSHISQIEKGKRSMS 85 Query: 73 IRYALYLRNEYEISFDWIY 91 + + + + Sbjct: 86 TELLKKMAEALRVDAELLL 104 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + ++ E + A ++ +R +GM+ + G+ NS +S E+G+ Sbjct: 22 FHRRLVSGEEETFPAEVADRLLAGEHPVRVLRSHRGMTLQQVADACGVTNSHISQIEKGK 81 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 + +K+ + + + + Sbjct: 82 RSMSTELLKKMAEALRVDAELLL 104 >gi|317406552|gb|EFV86747.1| hypothetical protein HMPREF0005_04959 [Achromobacter xylosoxidans C54] Length = 184 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D+ R++ +R+ + + +++ +S ++ E G+ SI L L Y + Sbjct: 1 MIDLPHRLRALRRQQSLSLEQLGERTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVS 60 Query: 89 WIYDGE 94 + G+ Sbjct: 61 QLVGGD 66 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 38/89 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL+++R+ + +S + G+ G+ S LS E+G + P I ++ + + Sbjct: 1 MIDLPHRLRALRRQQSLSLEQLGERTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVS 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + GD + + + ++D Sbjct: 61 QLVGGDGAAQDEVVSLVRVADREALQRRD 89 >gi|319650130|ref|ZP_08004279.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2] gi|317398311|gb|EFV79000.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2] Length = 183 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 33/85 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G +++IRK + A ++ + E G + ++ + + + Sbjct: 1 MENIQKSIGENLRNIRKTRGYSLDAAAEITGVSKAMLGQIERGESNPTVTTLWKIASGLQ 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + E D + ++ + Sbjct: 61 VSFSSLIHEEPSDVQLIELKTLTPI 85 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IG L++IRK +G S ++ G+ + L E+G + P + KI + Sbjct: 5 QKSIGENLRNIRKTRGYSLDAAAEITGVSKAMLGQIERGESNPTVTTLWKIASGLQVSFS 64 Query: 171 WIYFGD 176 + + Sbjct: 65 SLIHEE 70 >gi|257898126|ref|ZP_05677779.1| transcriptional regulator [Enterococcus faecium Com15] gi|257836038|gb|EEV61112.1| transcriptional regulator [Enterococcus faecium Com15] Length = 370 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + ++RK TQ+ +A +++V+ +E G + L + +++S D + Sbjct: 6 LSKNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELL 65 Query: 92 DGEVI 96 Sbjct: 66 GYHPQ 70 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 41/77 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++ + ++RK+KG++Q + +G+ +++S +E G+++P++ K+ Sbjct: 1 MEELSLSKNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVS 60 Query: 169 LDWIYFGDEVIVPKSIK 185 +D + + + I+ Sbjct: 61 VDELLGYHPQLTKEQIR 77 >gi|237733315|ref|ZP_04563796.1| predicted protein [Mollicutes bacterium D7] gi|229383696|gb|EEO33787.1| predicted protein [Coprobacillus sp. D7] Length = 138 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK +Q+++A N A++ +E+ + +I + + EI+ + + Sbjct: 3 LGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNELL 62 Query: 92 DGEVIDRRYEDV 103 E Sbjct: 63 GLEEDSNDEYAK 74 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G R++S RK KG+SQ + L + LS +E +P I + + + L+ Sbjct: 1 MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNE 60 Query: 172 IYFGDEVIVPKSIK 185 + +E + K Sbjct: 61 LLGLEEDSNDEYAK 74 >gi|229541996|ref|ZP_04431056.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326416|gb|EEN92091.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 189 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 35/87 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ + +G +IK++R TQ+E+ + + ++ E + S SI + Sbjct: 1 MLNKMEGFMMKIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSIDTFFNIL 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKK 107 + +D E +++ + Sbjct: 61 EVLGCTPKEFFDEEEREQKVVYGEEDQ 87 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 1/99 (1%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + NK IG ++K++R KG++Q E G+ + +S E+ + P I I Sbjct: 1 MLNKMEGFMMKIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSIDTFFNIL 60 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +V +F +E K + + ++ K Sbjct: 61 EVLGCTPKE-FFDEEEREQKVVYGEEDQTDYLDEERGYK 98 >gi|150376587|ref|YP_001313183.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031134|gb|ABR63250.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 193 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ E+++Y +G RIK +R ++A + ++ E G ++ L + Sbjct: 6 LSNELQRY--AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIA 63 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + + D ++ + + V ++RL Sbjct: 64 MVFGVGLDHFFNVDKEEPLIAIVRKEQRL 92 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 38/86 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 L YAIG R+K++R K + ++ G+ + LS E+G+ P + +I V Sbjct: 8 NELQRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFG 67 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQS 192 LD + D+ +I R + Sbjct: 68 VGLDHFFNVDKEEPLIAIVRKEQRLK 93 >gi|89096956|ref|ZP_01169847.1| dna-binding protein [Bacillus sp. NRRL B-14911] gi|89088336|gb|EAR67446.1| dna-binding protein [Bacillus sp. NRRL B-14911] Length = 69 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +IK++RK++ +Q+E+A +N EN S+ A L ++ D ++ Sbjct: 3 NQIKEVRKSSGLSQEELAKACGVSRQTINAIENNKYDPSLALAFQLAESLGMTVDQLFH 61 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K +RK G+SQ E K G+ T++ E + P + A ++ + +D ++ Sbjct: 1 MENQIKEVRKSSGLSQEELAKACGVSRQTINAIENNKYDPSLALAFQLAESLGMTVDQLF 60 >gi|172057738|ref|YP_001814198.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990259|gb|ACB61181.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 292 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ +G IK IRK TQKE+ G ++ ++ ENG S +I + Sbjct: 2 MKSLPHMIGNEIKRIRKEKKMTQKELCDGI-CSQAEISKIENGRNSPTIDLLQQISKRLR 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNK 106 + ++ ++ + + N Sbjct: 61 VPLSLLFRDQLESDAFREADNH 82 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 P+ IG +K IRK+K M+Q E + + +S E GR P I ++I + + L Sbjct: 6 PHMIGNEIKRIRKEKKMTQKELCDGI-CSQAEISKIENGRNSPTIDLLQQISKRLRVPLS 64 Query: 171 WIYFG 175 ++ Sbjct: 65 LLFRD 69 >gi|228990384|ref|ZP_04150349.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides DSM 12442] gi|228996484|ref|ZP_04156123.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock3-17] gi|229004136|ref|ZP_04161937.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock1-4] gi|228756997|gb|EEM06241.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock1-4] gi|228763116|gb|EEM12024.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock3-17] gi|228768910|gb|EEM17508.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides DSM 12442] Length = 107 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + N +I D + Sbjct: 2 IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 E+ D + K Sbjct: 62 LHDEIPSENQLDSEWTHLVKEAMNSGVSKE 91 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R +G+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|154496456|ref|ZP_02035152.1| hypothetical protein BACCAP_00748 [Bacteroides capillosus ATCC 29799] gi|150274539|gb|EDN01616.1| hypothetical protein BACCAP_00748 [Bacteroides capillosus ATCC 29799] Length = 71 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R A Q+E+ ++L E G + SI AL + + + + ++ Sbjct: 5 NRLKELRAAKGLNQQELGALVGASRQTISLIERGDYNPSITLALRIAKVFGTTVEQVFYL 64 Query: 94 EVID 97 D Sbjct: 65 TEED 68 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK +R KG++Q E G L+G T+S E+G P I A +I +V ++ Sbjct: 1 MPLENRLKELRAAKGLNQQELGALVGASRQTISLIERGDYNPSITLALRIAKVFGTTVEQ 60 Query: 172 IYFGDEV 178 +++ E Sbjct: 61 VFYLTEE 67 >gi|89901996|ref|YP_524467.1| transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346733|gb|ABD70936.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 201 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R T ++ + S ++ ENG+ S + + L +I ++ Sbjct: 14 LGQRIRAQRSQLGWTLEQTSQATGLARSTLSKIENGLMSPTYDALIKLATGLQIDISELF 73 Query: 92 D 92 + Sbjct: 74 E 74 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+++ R G + + + G+ STLS E G P K+ + + ++ Sbjct: 16 QRIRAQRSQLGWTLEQTSQATGLARSTLSKIENGLMSPTYDALIKLATGLQIDISELFEP 75 Query: 176 DEVI 179 ++ I Sbjct: 76 NKNI 79 >gi|317403434|gb|EFV83946.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 225 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +RK + ++ ++A ++ E G+ S S++ L E+ +S + + Sbjct: 33 LGQQLRQLRKQHGRSLADVAQACGMSLGLLSQIERGLSSASVKTLHQLAREFGVSVNTLL 92 Query: 92 D 92 Sbjct: 93 R 93 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + +D + +G +L+ +RK G S + + GM LS E+G + +K ++ Sbjct: 22 PGRPESAVDMW-LGQQLRQLRKQHGRSLADVAQACGMSLGLLSQIERGLSSASVKTLHQL 80 Query: 162 KQVTKKHLDWIYFGDE 177 + ++ + E Sbjct: 81 AREFGVSVNTLLRNAE 96 >gi|308048864|ref|YP_003912430.1| XRE family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307631054|gb|ADN75356.1| transcriptional regulator, XRE family with cupin sensor [Ferrimonas balearica DSM 9799] Length = 180 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 28/78 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R +Q+E+A ++ E S S+ + + IS Sbjct: 2 DIGNRLRQLRTQAGLSQRELAKRTGVTNGFISQVEKNSVSPSVASLKKILDGLPISLTNF 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 +D E + Sbjct: 62 FDSEERQPAQVVFRADEM 79 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 33/78 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RL+ +R G+SQ E K G+ N +S E+ P + +KI L Sbjct: 1 MDIGNRLRQLRTQAGLSQRELAKRTGVTNGFISQVEKNSVSPSVASLKKILDGLPISLTN 60 Query: 172 IYFGDEVIVPKSIKRAKG 189 + +E + + RA Sbjct: 61 FFDSEERQPAQVVFRADE 78 >gi|228958663|ref|ZP_04120381.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] gi|229109833|ref|ZP_04239418.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-15] gi|229127789|ref|ZP_04256776.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-Cer4] gi|229153781|ref|ZP_04281918.1| Transcriptional regulator, XRE [Bacillus cereus m1550] gi|228629684|gb|EEK86375.1| Transcriptional regulator, XRE [Bacillus cereus m1550] gi|228655667|gb|EEL11518.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-Cer4] gi|228673678|gb|EEL28937.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-15] gi|228801084|gb|EEM47983.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 192 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 12 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 71 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M K S Sbjct: 72 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLN---KRANTTES 128 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 S+ ++ I K +V L+ ++ GD V +P ++K N+S + + Sbjct: 129 HYSHEDKEE----IAVIMK-GEVY-VELEGKEYYLEEGDVVRIPPNVKHRFLNKSDESN 181 Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ D + Sbjct: 19 YRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFIND-IDT 77 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 78 DSLISKKKDRKKVYRENND 96 >gi|15887370|ref|NP_353051.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15154869|gb|AAK85836.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 121 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 6/113 (5%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW----- 89 ++ +R+ TQKEMA + ++ E+G S + + I +D Sbjct: 8 VRQLRERKGVTQKEMAAAIGVSPAYLSALEHGKRGKPSFDLLQRIAGYFNIIWDEAEELF 67 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 G + D + IRK E +L S Sbjct: 68 FLAGSSDPKVVIDTVGLPPQYTAFANRLARDIRKLPPSVVEELSAVLQKSRSC 120 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 ++ +R+ KG++Q E +G+ + LS E G+ P ++I Sbjct: 1 MTPFAEAVRQLRERKGVTQKEMAAAIGVSPAYLSALEHGKRGKPSFDLLQRIAGYFNIIW 60 Query: 168 -HLDWIYFGDEVIVPKSI 184 + ++F PK + Sbjct: 61 DEAEELFFLAGSSDPKVV 78 >gi|73663000|ref|YP_301781.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495515|dbj|BAE18836.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 179 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R TQ+E+A + + ++ E+ S S+ L + S Sbjct: 2 EIGKKIKNLRNIKKLTQEELAERTDLSKGYISQIESQYASPSMETFLNILEVLGTSPSDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + D Y G L Sbjct: 62 FKEPKSEKVLYKKATQITYDEYDKGYIL 89 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R K ++Q E + + +S E P ++ I +V Sbjct: 1 MEIGKKIKNLRNIKKLTQEELAERTDLSKGYISQIESQYASPSMETFLNILEVLGTSPSD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + E K + + + + K Sbjct: 61 FF--KEPKSEKVLYKKATQITYDEYDKGY 87 >gi|331092590|ref|ZP_08341409.1| hypothetical protein HMPREF9477_02052 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400601|gb|EGG80215.1| hypothetical protein HMPREF9477_02052 [Lachnospiraceae bacterium 2_1_46FAA] Length = 162 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 30/85 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ RK +Q E+A N V+ +E+G +I L Y ++ + Sbjct: 5 EKLCKYRKERKLSQAEIAEKLNVTRQKVSRWEHGTSVPNIETMKQLAEIYGVNVTEMLQQ 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 E + + K + + + Sbjct: 65 EEKKSIEQPIVKKVKEVSSSKHEDI 89 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 40/88 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L RK++ +SQ E + L + +S +E G ++P I+ +++ ++ ++ Sbjct: 1 MTLEEKLCKYRKERKLSQAEIAEKLNVTRQKVSRWEHGTSVPNIETMKQLAEIYGVNVTE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +E + K + S +D Sbjct: 61 MLQQEEKKSIEQPIVKKVKEVSSSKHED 88 >gi|225575462|ref|ZP_03784072.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM 10507] gi|225037314|gb|EEG47560.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM 10507] Length = 145 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I ++RK +Q E+A AV+ +E G +I L +++S + + Sbjct: 7 ISELRKEYGLSQDELAEKVYVTRQAVSRWETGETIPNIETLKLLSKLFDVSINTLL 62 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +RK+ G+SQ E + + + +S +E G TIP I+ + + ++ ++ Sbjct: 1 MKTKEVISELRKEYGLSQDELAEKVYVTRQAVSRWETGETIPNIETLKLLSKLFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|108804104|ref|YP_644041.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765347|gb|ABG04229.1| transcriptional regulator, XRE family with cupin sensor [Rubrobacter xylanophilus DSM 9941] Length = 203 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG R++ +R+ T + +A + + ++ E G ++ A L +S Sbjct: 15 RRVGERVRMLRRERGLTLEGLAGRSGVSRAMISKVERGEKVPTLVVAARLAEGLGVSLSE 74 Query: 90 I 90 + Sbjct: 75 L 75 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 28/57 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R+++G++ G+ + +S E+G +P + A ++ + L + Sbjct: 19 ERVRMLRRERGLTLEGLAGRSGVSRAMISKVERGEKVPTLVVAARLAEGLGVSLSEL 75 >gi|325686744|gb|EGD28770.1| transcription regulator [Streptococcus sanguinis SK72] Length = 136 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|313901693|ref|ZP_07835124.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313468044|gb|EFR63527.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 216 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDW 89 +VG RI+D+R+ + +++A + ++ ++ EN S+ L + E+ Sbjct: 2 EVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVVLRIAAALEVDLAE 61 Query: 90 IY 91 + Sbjct: 62 LV 63 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLD 170 +G R++ +R+ +G+S + + G+ + LS E P + +I + L Sbjct: 1 MEVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVVLRIAAALEVDLA 60 Query: 171 WIY 173 + Sbjct: 61 ELV 63 >gi|312863214|ref|ZP_07723452.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100750|gb|EFQ58955.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 158 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S+ I Sbjct: 2 IGENIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDIV 61 Query: 92 DGEV 95 E Sbjct: 62 GEEK 65 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 1 MIGENIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60 Query: 173 YFGDEVIVP 181 ++++ P Sbjct: 61 VGEEKMLTP 69 >gi|254805385|ref|YP_003083606.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254668927|emb|CBA07148.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254670077|emb|CBA04959.1| transcriptional regulator [Neisseria meningitidis alpha153] gi|254672200|emb|CBA05097.1| transcriptional regulator [Neisseria meningitidis alpha275] Length = 126 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 30/67 (44%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G +I+ RK + +++A N + ++ +E G+ +I + + + E Sbjct: 17 EADRLIGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFLETP 76 Query: 87 FDWIYDG 93 W + Sbjct: 77 IAWFFQD 83 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ RK+ G S + + + + +S YE+G I I + + W + Sbjct: 24 EKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFLETPIAWFF-- 81 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + +PK + A +++ + + S NP Sbjct: 82 -QDCLPKPLTVACTPENTPEQQW--HSLNP 108 >gi|300690029|ref|YP_003751024.1| transcription regulator protein [Ralstonia solanacearum PSI07] gi|299077089|emb|CBJ49709.1| putative transcription regulator protein [Ralstonia solanacearum PSI07] Length = 113 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R A +K+Q+ +A A+ + ++ E G+ + S+ + ++ ++ Sbjct: 24 LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICYALNVTLAELF 83 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 R A +K R Sbjct: 84 ---GPMDGVSLKPTGTRRINAARPPEIKRNR 111 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+K R SQ + + +S+ E+G P ++ I L + Sbjct: 23 ALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICYALNVTLAEL 82 Query: 173 Y 173 + Sbjct: 83 F 83 >gi|238923145|ref|YP_002936658.1| hypothetical protein EUBREC_0738 [Eubacterium rectale ATCC 33656] gi|238874817|gb|ACR74524.1| Hypothetical protein EUBREC_0738 [Eubacterium rectale ATCC 33656] Length = 80 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++++R+ N+KTQ+++A ++ +E G I + L L Y +S D+I Sbjct: 13 QRMRNLREDNDKTQQQIADYLGTSQTMYARYERGANELPIHHLLALCKYYNVSADYIL 70 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 R++++R+D +Q + LG + + YE+G I + + D Sbjct: 8 NMDYIQRMRNLREDNDKTQQQIADYLGTSQTMYARYERGANELPIHHLLALCKYYNVSAD 67 Query: 171 WIY 173 +I Sbjct: 68 YIL 70 >gi|289664753|ref|ZP_06486334.1| putative DNA binding protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669222|ref|ZP_06490297.1| putative DNA binding protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 66 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R++++R+A+ +Q E+ +N E G S+ A + + S + ++ Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVFLY 62 Query: 94 EV 95 E Sbjct: 63 ED 64 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 37/64 (57%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +R++ +R+ G SQ E G+ LG+ T++ E G+ P + A +I ++ + ++ ++ Sbjct: 1 MNSRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 Query: 174 FGDE 177 ++ Sbjct: 61 LYED 64 >gi|228899959|ref|ZP_04064198.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 4222] gi|228964335|ref|ZP_04125453.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar sotto str. T04001] gi|228795344|gb|EEM42833.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar sotto str. T04001] gi|228859670|gb|EEN04091.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 4222] Length = 107 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + + Q + Sbjct: 62 LHDETTKATNLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQ 106 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|91978515|ref|YP_571174.1| hypothetical protein RPD_4054 [Rhodopseudomonas palustris BisB5] gi|91684971|gb|ABE41273.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB5] Length = 480 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + IR+ +Q ++A G S +NL E + + L L Y++ + Sbjct: 11 VGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNY 146 + R+ N+ DP L + +R + +L G+ +S Y Sbjct: 70 -ATADEDRFFAELNEIFSDPLFRQIDLPKQELR--------DLAELCPGVTHSLQRLY 118 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + IR+ G+SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRDLATADED 75 >gi|322807345|emb|CBZ04919.1| repressor (CI-like) [Bacteriophage A118] [Clostridium botulinum H04402 065] Length = 136 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 16/122 (13%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ R+K R + Q E+A N + V+ +ENG L + + S D Sbjct: 1 MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD 60 Query: 89 WIY---------------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 +I DG + + + + +K + +++ + Sbjct: 61 YILGRSENRNGIISKGNIDGSNYEFELDKSIFPNGITREQMINYIKEL-EERNKELEKEA 119 Query: 134 KL 135 ++ Sbjct: 120 EI 121 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RLK R K ++Q E K L + T+SN+E G IP+ K+ +D Sbjct: 1 MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD 60 Query: 171 WIYFGDE 177 +I E Sbjct: 61 YILGRSE 67 >gi|295101242|emb|CBK98787.1| transcriptional regulator, XRE family [Faecalibacterium prausnitzii L2-6] Length = 74 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ ++ TQ+++A + + N +E G+ + L + Y S D++ Sbjct: 5 RRIRDMREDHDLTQRQLAALLHMPQPQYNRYEQGLRDLPTTTLIALADIYHTSTDYLLGR 64 Query: 94 EVIDRRY 100 + Sbjct: 65 TNDPKPP 71 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A R++ +R+D ++Q + LL MP + YEQG + + D+ Sbjct: 1 MAYYRRIRDMREDHDLTQRQLAALLHMPQPQYNRYEQGLRDLPTTTLIALADIYHTSTDY 60 Query: 172 IYFGDEVIVP 181 + P Sbjct: 61 LLGRTNDPKP 70 >gi|238025551|ref|YP_002909783.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237880216|gb|ACR32548.1| Transcriptional regulator, XRE family protein [Burkholderia glumae BGR1] Length = 191 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 28/71 (39%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + E +G R++ +R+ T E+A A + ++ E G + S+ + Sbjct: 5 SDESTSAAAAIGARMRALRQRLKLTLDEVAAAAGISKPFLSQVERGRATPSLASLAGIAR 64 Query: 82 EYEISFDWIYD 92 ++ + + Sbjct: 65 ALGVTMQYFVE 75 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIGAR++++R+ ++ E G+ LS E+GR P + I + + + Sbjct: 14 AIGARMRALRQRLKLTLDEVAAAAGISKPFLSQVERGRATPSLASLAGIARALGVTMQYF 73 Query: 173 YFGDEVIVPKSIKRAK 188 + K+++RA Sbjct: 74 V--EAPSEAKAVRRAD 87 >gi|146318559|ref|YP_001198271.1| Cro/CI family transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320757|ref|YP_001200468.1| Cro/CI family transcriptional regulator [Streptococcus suis 98HAH33] gi|253751682|ref|YP_003024823.1| Cro/CI family transcriptional regulator [Streptococcus suis SC84] gi|253755603|ref|YP_003028743.1| Cro/CI family transcriptional regulator [Streptococcus suis BM407] gi|145689365|gb|ABP89871.1| transcriptional regulator, Cro/CI family [Streptococcus suis 05ZYH33] gi|145691563|gb|ABP92068.1| transcriptional regulator, Cro/CI family [Streptococcus suis 98HAH33] gi|251815971|emb|CAZ51587.1| transcriptional regulator, Cro/CI family [Streptococcus suis SC84] gi|251818067|emb|CAZ55859.1| transcriptional regulator, Cro/CI family [Streptococcus suis BM407] Length = 73 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 35/71 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ + +Q+ +A + +SA + E+G + + + + Y++S D++ Sbjct: 3 RRIRDLREDCDYSQEYLARYLSCSQSAYSKIESGKRQIPVDFLIKISELYQVSTDYLLGL 62 Query: 94 EVIDRRYEDVT 104 R ++ Sbjct: 63 TDTPYRLKNKK 73 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D SQ + L S S E G+ + KI ++ + D++ Sbjct: 1 MYRRIRDLREDCDYSQEYLARYLSCSQSAYSKIESGKRQIPVDFLIKISELYQVSTDYLL 60 >gi|85715308|ref|ZP_01046291.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85697954|gb|EAQ35828.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 483 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 13/130 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + IR+ +Q ++A G S VNL E + + L L Y++ + Sbjct: 11 VGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVTAQILLRLAEAYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQ 148 + R+ N+ DP + + +R + +L G+ ++ Y Sbjct: 70 -ATADEDRFFAELNEVFSDPLFRQIDIPKQELR--------DLAELCPGVTHALQRLYAA 120 Query: 149 GRTIPEIKPA 158 + Sbjct: 121 YTEARRGETL 130 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + IR+ G+SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVTAQILLRLAEAYDLDLRDLATADED 75 >gi|75761606|ref|ZP_00741559.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490910|gb|EAO54173.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 70 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R TQ+++A + L E G S S+ AL L ++++ + ++ Sbjct: 5 NRVRELRARFRWTQQDLADAIGVTRQTIGLIEKGDYSPSVTMALKLAAVFQVTVEEVFYL 64 Query: 94 EVIDR 98 + +R Sbjct: 65 KGEER 69 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +R +Q + +G+ T+ E+G P + A K+ V + ++ Sbjct: 1 MILENRVRELRARFRWTQQDLADAIGVTRQTIGLIEKGDYSPSVTMALKLAAVFQVTVEE 60 Query: 172 IYF--GDE 177 +++ G+E Sbjct: 61 VFYLKGEE 68 >gi|239945081|ref|ZP_04697018.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 15998] gi|239991543|ref|ZP_04712207.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 11379] gi|291448543|ref|ZP_06587933.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] gi|291351490|gb|EFE78394.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] Length = 509 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE- 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 3 DDYLVRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDS 62 Query: 85 --ISFDW 89 +S + Sbjct: 63 EIVSLGY 69 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|227551898|ref|ZP_03981947.1| DNA-binding protein [Enterococcus faecium TX1330] gi|257895511|ref|ZP_05675164.1| transcriptional regulator [Enterococcus faecium Com12] gi|227178970|gb|EEI59942.1| DNA-binding protein [Enterococcus faecium TX1330] gi|257832076|gb|EEV58497.1| transcriptional regulator [Enterococcus faecium Com12] Length = 370 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + ++RK TQ+ +A +++V+ +E G + L + +++S D + Sbjct: 6 LSKNVANLRKKKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELL 65 Query: 92 DGEVI 96 Sbjct: 66 GYHPQ 70 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 40/77 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++ + ++RK KG++Q + +G+ +++S +E G+++P++ K+ Sbjct: 1 MEELSLSKNVANLRKKKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVS 60 Query: 169 LDWIYFGDEVIVPKSIK 185 +D + + + I+ Sbjct: 61 VDELLGYHPQLTKEQIR 77 >gi|297191369|ref|ZP_06908767.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] gi|197720621|gb|EDY64529.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] Length = 509 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE- 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 3 DDYLVRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDS 62 Query: 85 --ISFDW 89 +S + Sbjct: 63 EIVSLGY 69 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|307710471|ref|ZP_07646908.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307618734|gb|EFN97873.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 158 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +RK ++ TQ E A ++++ +ENG+ S S + ++ +S+ I Sbjct: 2 IGENIKTLRKTHDLTQPEFAKIIGISRNSLSRYENGISSVSTELVDRICKKFNVSYLDIV 61 Query: 92 DGEV 95 E Sbjct: 62 GEEK 65 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +K++RK ++Q EF K++G+ ++LS YE G + + +I + I Sbjct: 1 MIGENIKTLRKTHDLTQPEFAKIIGISRNSLSRYENGISSVSTELVDRICKKFNVSYLDI 60 Query: 173 YFGDEVIVP 181 ++++ P Sbjct: 61 VGEEKMLTP 69 >gi|302063488|ref|ZP_07255029.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato K40] Length = 129 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 37/85 (43%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E+ +G R++ RKA+ Q ++A + ++ +E G+ + ++ + + L Sbjct: 11 EMDSLGAFIGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVAL 70 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKR 108 +IS + + I E + + Sbjct: 71 KISPAELLPADGISSSREHLPKLRD 95 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +++ RK G +Q + +L+G T+S YE+G P + K+ K + D Sbjct: 23 VRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELLPADG 82 Query: 178 VIVPKSIKRAKGNQSSKK 195 + + +++ KK Sbjct: 83 ISSSREHLPKLRDEAVKK 100 >gi|291541611|emb|CBL14721.1| transcriptional regulator, XRE family [Ruminococcus bromii L2-63] Length = 69 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIKD+R+ N+ TQKE+A +S + +E G + + L + Y S D++ Sbjct: 4 RIKDLREDNDLTQKEIAKVLMCDQSLYSKYERGEREIPLSLLIKLADCYGTSLDYLTCRT 63 Query: 95 VID 97 Sbjct: 64 DNP 66 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +R+D ++Q E K+L S S YE+G + K+ LD++ Sbjct: 5 IKDLREDNDLTQKEIAKVLMCDQSLYSKYERGEREIPLSLLIKLADCYGTSLDYL 59 >gi|257886939|ref|ZP_05666592.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257822993|gb|EEV49925.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 370 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + ++RK TQ+ +A +++V+ +E G + L + +++S D + Sbjct: 6 LSKNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELL 65 Query: 92 DGEVI 96 Sbjct: 66 GYHPQ 70 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 41/77 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++ + ++RK+KG++Q + +G+ +++S +E G+++P++ K+ Sbjct: 1 MEELSLSKNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVS 60 Query: 169 LDWIYFGDEVIVPKSIK 185 +D + + + I+ Sbjct: 61 VDELLGYHPQLTKEQIR 77 >gi|228962054|ref|ZP_04123549.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797628|gb|EEM44746.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 125 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 29/60 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++RK + +++ ++ V+ +EN + + + +++S D++ Sbjct: 8 FGQRLKELRKNKKLSMRQLGEVLGVKQTNVSNWENVGTEPDYKTLIRIAQFFDVSTDYLI 67 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 43/94 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y G RLK +RK+K +S + G++LG+ + +SN+E T P+ K +I Q D+ Sbjct: 6 YMFGQRLKELRKNKKLSMRQLGEVLGVKQTNVSNWENVGTEPDYKTLIRIAQFFDVSTDY 65 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + K + ++ + S NP Sbjct: 66 LIGNSVEFNDNESKEKREIALLAQTLHKELSKNP 99 >gi|325110412|ref|YP_004271480.1| cupin [Planctomyces brasiliensis DSM 5305] gi|324970680|gb|ADY61458.1| Cupin 2 conserved barrel domain protein [Planctomyces brasiliensis DSM 5305] Length = 189 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 40/91 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + R+++IR+++G++ E G+ S LS E R P + +I QV Sbjct: 1 MNLSELAQRIRAIRRERGLTLEEVASKSGLTRSWLSKVENFRVTPSLPALSQIAQVLGIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + + G + P + R + + + + Sbjct: 61 VAELVRGLDETPPLIVVRRGERKVVDRDQSE 91 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 8/106 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ IR+ T +E+A + S ++ EN + S+ + I + Sbjct: 5 ELAQRIRAIRRERGLTLEEVASKSGLTRSWLSKVENFRVTPSLPALSQIAQVLGIPVAEL 64 Query: 91 YDG--EVIDRRYEDVTNKKRLD------PYAIGARLKSIRKDKGMS 128 G E +K +D + L R ++ M Sbjct: 65 VRGLDETPPLIVVRRGERKVVDRDQSEINTTVYEALAHKRSNRKMD 110 >gi|255974976|ref|ZP_05425562.1| predicted protein [Enterococcus faecalis T2] gi|255967848|gb|EET98470.1| predicted protein [Enterococcus faecalis T2] Length = 239 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 27/74 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +K R TQ E+A ++ +EN +I + L YE++ D + Sbjct: 2 NIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDRL 61 Query: 91 YDGEVIDRRYEDVT 104 + Sbjct: 62 LKEDNTMVEKLSKD 75 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG LK R + G++Q E + L + T+SN+E ++ P I ++ + + LD Sbjct: 1 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDR 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D +V K K + Q KK Sbjct: 61 LLKEDNTMVEKLSKDIREGQKYKK 84 >gi|325969996|ref|YP_004246187.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025234|gb|ADY11993.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 175 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 K G K++RK TQ+++++ N V+ +E G + + + + YE+ Sbjct: 3 QKKTGAFFKELRKEKKLTQEQVSVRLNVSNRTVSRWETGSTMPDLDVLMQMADFYEVD 60 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ GA K +RK+K ++Q + L + N T+S +E G T+P++ ++ + Sbjct: 1 MNQKKTGAFFKELRKEKKLTQEQVSVRLNVSNRTVSRWETGSTMPDLDVLMQMADFYEVD 60 >gi|307329641|ref|ZP_07608799.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884699|gb|EFN15727.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V R++D+R+ + T + A + ++ E G S+ L L Y + + Sbjct: 31 VAPRLRDLRRRSGLTLEAAAHRVGLSPAHLSRLETGRRQPSLPMLLTLARTYGTTVSDLL 90 Query: 92 DGEVIDRRY 100 E +R Sbjct: 91 GEETSERDP 99 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R+ G++ +G+ + LS E GR P + + + + + G+E Sbjct: 35 LRDLRRRSGLTLEAAAHRVGLSPAHLSRLETGRRQPSLPMLLTLARTYGTTVSDLL-GEE 93 Query: 178 VIVPKSIKRAK 188 + RA Sbjct: 94 TSERDPVVRAD 104 >gi|256848878|ref|ZP_05554312.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256714417|gb|EEU29404.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 68 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++K +R +Q ++A + V+ +E G + + + + +S D I+ Sbjct: 4 KLKILRVEKGMSQSDLAQALGTTQVTVSAWETGRSTPRPPMMQKIADYFGVSKDDIFF 61 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LK +R +KGMSQ + + LG T+S +E GR+ P +KI D I+F Sbjct: 5 LKILRVEKGMSQSDLAQALGTTQVTVSAWETGRSTPRPPMMQKIADYFGVSKDDIFF 61 >gi|229059476|ref|ZP_04196859.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228719842|gb|EEL71434.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 181 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEENNTDDLIVRSHKRKKM 84 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 + ++ K + Sbjct: 61 TFSFLLEENNTDDLIVRSHKRKK 83 >gi|118476856|ref|YP_894007.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118416081|gb|ABK84500.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 114 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 9 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 68 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + + Q + Sbjct: 69 LHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQ 113 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLD 170 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 7 NMIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVD 66 Query: 171 WIYFGD 176 + + Sbjct: 67 TLLHDE 72 >gi|294084784|ref|YP_003551542.1| transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664357|gb|ADE39458.1| transcriptional regulator, putative [Candidatus Puniceispirillum marinum IMCC1322] Length = 468 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G R++ +R+ + +TQ +MA + VNL E S S++ + L +EY + DW Sbjct: 6 IGPRLRQLRRDSGQTQAQMAEKLGISPAYVNLLEKNQRSLSVQVLMALSDEYNV--DW 61 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG RL+ +R+D G +Q + + LG+ + ++ E+ + ++ + Sbjct: 1 MRKTFIGPRLRQLRRDSGQTQAQMAEKLGISPAYVNLLEKNQRSLSVQVLMALSDEYNV- 59 Query: 169 LDW 171 DW Sbjct: 60 -DW 61 >gi|228945433|ref|ZP_04107787.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814236|gb|EEM60503.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 181 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAYITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEDTNTDDLIVRSHKRKKM 84 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMAYITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D ++ K + Sbjct: 61 TFSFLLEDTNTDDLIVRSHKRKK 83 >gi|300774465|ref|ZP_07084328.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300506280|gb|EFK37415.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 189 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 34/69 (49%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +G R+KDIRK NN T E+A AN V+ ENG S+ L L E Sbjct: 1 MNDFLIGIGKRLKDIRKKNNLTINELAFKANVSNGLVSRIENGRTIPSLPVLLDLIQSLE 60 Query: 85 ISFDWIYDG 93 I + ++G Sbjct: 61 IDASYFFEG 69 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK IRK ++ E + N +S E GRTIP + + Q + + + G Sbjct: 10 KRLKDIRKKNNLTINELAFKANVSNGLVSRIENGRTIPSLPVLLDLIQSLEIDASYFFEG 69 Query: 176 DE 177 E Sbjct: 70 VE 71 >gi|118472940|ref|YP_888581.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118174227|gb|ABK75123.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 192 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 28/71 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R T +++A A S ++ E+G ++ + L ++ D + Sbjct: 16 QRLRELRTERGLTLEDVASRAQIDVSTLSRLESGKRRLALDHLPRLATALSVTTDDLLRA 75 Query: 94 EVIDRRYEDVT 104 + T Sbjct: 76 PEAEDPRVRGT 86 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+ +R ++G++ + + STLS E G+ + ++ D + Sbjct: 15 RQRLRELRTERGLTLEDVASRAQIDVSTLSRLESGKRRLALDHLPRLATALSVTTDDLLR 74 Query: 175 GDEVIVPKS 183 E P+ Sbjct: 75 APEAEDPRV 83 >gi|163846261|ref|YP_001634305.1| helix-turn-helix domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524016|ref|YP_002568486.1| helix-turn-helix domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667550|gb|ABY33916.1| helix-turn-helix domain protein [Chloroflexus aurantiacus J-10-fl] gi|222447895|gb|ACM52161.1| helix-turn-helix domain protein [Chloroflexus sp. Y-400-fl] Length = 422 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 2/80 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN--QLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + R++ +R A T ++A N A++ +E+G S L + Sbjct: 2 ISQRLRQLRLARGMTLSDLAQATNHIVTRQAISKYEHGHAQPSPTVLQRLAQALGVRPTD 61 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + DG I + L Sbjct: 62 LLDGANIRVDVVAYRKRASL 81 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RL+ +R +GM+ + + + +S YE G P +++ Q Sbjct: 1 MISQRLRQLRLARGMTLSDLAQATNHIVTRQAISKYEHGHAQPSPTVLQRLAQALGVRPT 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + G + V R + + ++S+ Sbjct: 61 DLLDGANIRVDVVAYRKRASLGKRQSE 87 >gi|332361883|gb|EGJ39686.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 136 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I +RK N +Q+++A + +E G + Y+ L + +++S D + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDELV 61 Query: 92 DGEVI 96 E Sbjct: 62 HLESN 66 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 36/76 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I + +RK + +SQ + + +G+ T++ +E G ++P++ + ++ LD + Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60 Query: 173 YFGDEVIVPKSIKRAK 188 + ++ + K Sbjct: 61 VHLESNLLTTPSIKGK 76 >gi|288960685|ref|YP_003451025.1| transcriptional regulator [Azospirillum sp. B510] gi|288912993|dbj|BAI74481.1| transcriptional regulator [Azospirillum sp. B510] Length = 220 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 R + +G +I+ +R+ + T ++A A ++ ENG S S+ L + Sbjct: 31 RTLEQALGVQIRSLRRHLDLTVADLAAAAGISTGMLSKIENGQISPSLASLQALAGALNV 90 Query: 86 SFDWIY 91 ++ Sbjct: 91 PITALF 96 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 38/109 (34%), Gaps = 1/109 (0%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E R A+G +++S+R+ ++ + G+ LS E G+ Sbjct: 15 PAEEYVTGSSAPGAASRTLEQALGVQIRSLRRHLDLTVADLAAAAGISTGMLSKIENGQI 74 Query: 152 IPEIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKD 199 P + + + + ++ +E ++ +G ++ K Sbjct: 75 SPSLASLQALAGALNVPITALFASFEEKRGCSYVRAGQGVGIERRGTKS 123 >gi|224542029|ref|ZP_03682568.1| hypothetical protein CATMIT_01202 [Catenibacterium mitsuokai DSM 15897] gi|224525086|gb|EEF94191.1| hypothetical protein CATMIT_01202 [Catenibacterium mitsuokai DSM 15897] Length = 101 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R +Q+E+A + + + +ENG C SI+ L Y ++I Sbjct: 1 MGERLRKARLKMGYSQEEVARRIDTHRTTIGKYENGECEPSIKVLAKLIEIYCTDANYIL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 G+ + + + + Sbjct: 61 YGKDMKVMNVSRVPENCMRDVYM 83 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G RL+ R G SQ E + + +T+ YE G P IK K+ ++ ++I Sbjct: 1 MGERLRKARLKMGYSQEEVARRIDTHRTTIGKYENGECEPSIKVLAKLIEIYCTDANYIL 60 Query: 174 FGDEVIV 180 +G ++ V Sbjct: 61 YGKDMKV 67 >gi|27381826|ref|NP_773355.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354995|dbj|BAC51980.1| blr6715 [Bradyrhizobium japonicum USDA 110] Length = 210 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 2/109 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G ++ +R+ + +++A ++ E SIR L ++ + Sbjct: 24 QRLGETVRLLRQRAGLSIQDVANKTGLSNGMISQLERARAMPSIRTLRLLSIALDVPISY 83 Query: 90 IYDGEVIDRRYEDV--TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 ++ + N +RL +K G Q+E +L Sbjct: 84 FFETTDPGDVQRYIVRKNSRRLLRLTASGVVKEALTPDGKGQLELYELT 132 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 3/104 (2%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G+ + +G ++ +R+ G+S + G+ N +S E+ R Sbjct: 4 RGDTNGPKDAPTIETDDAVDQRLGETVRLLRQRAGLSIQDVANKTGLSNGMISQLERARA 63 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 +P I+ R + + + + E P ++R ++S++ Sbjct: 64 MPSIRTLRLLSIALDVPISYFF---ETTDPGDVQRYIVRKNSRR 104 >gi|322386886|ref|ZP_08060510.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269168|gb|EFX52104.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 65 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R ++ TQ ++A + L E G + S+ L + + D ++ E Sbjct: 6 RLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLFWEE 65 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RLK R + M+Q + +G+ T+ E G+ P + I + K LD Sbjct: 1 MAKNLRLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQ 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 LFWEE 65 >gi|259909529|ref|YP_002649885.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] gi|224965151|emb|CAX56683.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] Length = 136 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + G R+K++R +TQKE+A S N +E+GM + L + Sbjct: 10 QTEEQRRAFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELF 69 Query: 84 EISFDWIYDG 93 + D++ G Sbjct: 70 TTTIDYLLLG 79 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G RLK +R + +Q E L+G+ S + YE G IP + ++ ++ +D++ Sbjct: 17 AFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELFTTTIDYL 76 Query: 173 YFG 175 G Sbjct: 77 LLG 79 >gi|225011082|ref|ZP_03701546.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] gi|225004802|gb|EEG42760.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] Length = 64 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK++R + TQ+++A +N E G S+ A L + + + I+ E Sbjct: 5 IKELRARHQLTQEDLAHKVGVSRQTINAIEKGKFDPSLPLAFKLAHLFHTPIEGIFTHES 64 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 30/63 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +R ++Q + +G+ T++ E+G+ P + A K+ + ++ I+ Sbjct: 1 MKNSIKELRARHQLTQEDLAHKVGVSRQTINAIEKGKFDPSLPLAFKLAHLFHTPIEGIF 60 Query: 174 FGD 176 + Sbjct: 61 THE 63 >gi|218660254|ref|ZP_03516184.1| hypothetical protein RetlI_11854 [Rhizobium etli IE4771] Length = 280 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ E+++Y +G RIK +R ++A + ++ E G ++ L + Sbjct: 92 LSNELQRY--AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIA 149 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + + D + + + V ++RL Sbjct: 150 MVFGVGLDHFFKADKEEPLIAVVRKEQRL 178 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 40/101 (39%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E T L YAIG R+K++R K + ++ G+ + LS E+G+ Sbjct: 79 RNEKGVCDVLSDTLSNELQRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQM 138 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQS 192 P + +I V LD + D+ ++ R + Sbjct: 139 FPTLPTLLRIAMVFGVGLDHFFKADKEEPLIAVVRKEQRLK 179 >gi|206564610|ref|YP_002235373.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198040650|emb|CAR56636.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 180 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L + + ++ Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + G+ S LS E+G ++P I A K+ + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSESR 64 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 65 NRELITVTRA 74 >gi|90592588|ref|YP_529848.1| putative transcriptional regulator [Lactobacillus phage KC5a] gi|89891917|gb|ABD78790.1| putative transcriptional regulator [Lactobacillus phage KC5a] Length = 117 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K++R N T +E+ S ++ +E + L + + + D++ Sbjct: 3 NRLKELRHEKNLTLRELGEKVGMRNSTLSQYETNKREPKLDTWQKLADFFNVPVDYLL 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R +K ++ E G+ +GM NSTLS YE + P++ +K+ +D++ Sbjct: 1 MQNRLKELRHEKNLTLRELGEKVGMRNSTLSQYETNKREPKLDTWQKLADFFNVPVDYLL 60 >gi|324989660|gb|EGC21604.1| hypothetical protein HMPREF9388_2113 [Streptococcus sanguinis SK353] Length = 136 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|313888356|ref|ZP_07822026.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845636|gb|EFR33027.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 367 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I RK TQ+E+A +++V+ +E G I L + IS D + Sbjct: 3 KIGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDEL 62 Query: 91 YDGEV 95 + Sbjct: 63 IGYDP 67 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 42/88 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG + RK++G++Q E + + + +++S +E G++ P+I K+ +D Sbjct: 1 MLKIGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + D + I++ + ++ S + Sbjct: 61 ELIGYDPGLSSAQIQKFYIDLENRVSDE 88 >gi|307324371|ref|ZP_07603579.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890102|gb|EFN21080.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 203 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 29/87 (33%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T E V RI+ +R A + ++A S ++ E G S+ + Sbjct: 1 MTQEDSALDGLVRKRIRGLRSALGWSLDDLAARCYLSPSTLSRIETGHRRISLDQLSAIA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKK 107 + D + + + D + Sbjct: 61 RALGTTLDQLVESDADDDVIIRPQHDM 87 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ +R G S + + STLS E G + I + LD + Sbjct: 13 RKRIRGLRSALGWSLDDLAARCYLSPSTLSRIETGHRRISLDQLSAIARALGTTLDQLVE 72 Query: 175 GD 176 D Sbjct: 73 SD 74 >gi|289661679|ref|ZP_06483260.1| hypothetical protein XcampvN_00915 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 116 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWI 90 + RI+ R +Q E+A + + V +E + SI + + + +S +W+ Sbjct: 8 LAARIRAARIGVGMSQTELAQKLDVNRATVGHWERKNRFAPSIDHLYAMSSVLRVSPNWL 67 Query: 91 YDGEVIDR 98 + GE + Sbjct: 68 FHGEDRPK 75 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLDWIYF 174 AR+++ R GMSQ E + L + +T+ ++E+ R P I + V + +W++ Sbjct: 10 ARIRAARIGVGMSQTELAQKLDVNRATVGHWERKNRFAPSIDHLYAMSSVLRVSPNWLFH 69 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKDKK 201 G++ + + SK K Sbjct: 70 GEDRPKLPEVGGVRAGLESKMLSLSKH 96 >gi|154252262|ref|YP_001413086.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156212|gb|ABS63429.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 72 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG ++ IR TQ++ A + + ++ E G + ++ L +S Sbjct: 4 RKTVGGNVRRIRLKKGLTQEQFAEISGFSQQYISGLEQGRRNPTVVTLYELATALGVSHL 63 Query: 89 WIYDGE 94 + + Sbjct: 64 DLLRPD 69 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ IR KG++Q +F ++ G +S EQGR P + ++ + D Sbjct: 10 NVRRIRLKKGLTQEQFAEISGFSQQYISGLEQGRRNPTVVTLYELATALGVSHLDLLRPD 69 >gi|78060929|ref|YP_370837.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968814|gb|ABB10193.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 180 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L + + ++ Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + G+ S LS E+G ++P I A K+ + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSESH 64 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 65 NRELITVTRA 74 >gi|322375624|ref|ZP_08050136.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] gi|321279332|gb|EFX56373.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] Length = 152 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++RK TQ+E+A +ENG +++ A L + + + ++ + Sbjct: 2 NRIKELRKQKKVTQQEVAEAIGVTRRGFQKWENGESQITLKNAAQLADYFGVPLSYLLNQ 61 Query: 94 EVI 96 E Sbjct: 62 EEE 64 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +RK K ++Q E + +G+ +E G + +K A ++ L ++ Sbjct: 1 MNRIKELRKQKKVTQQEVAEAIGVTRRGFQKWENGESQITLKNAAQLADYFGVPLSYLLN 60 Query: 175 GDEVIVP 181 +E Sbjct: 61 QEEEWEK 67 >gi|307544496|ref|YP_003896975.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307216520|emb|CBV41790.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 195 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 36/87 (41%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E DVG R++ +R +Q+E+A S+++L E G S S+ + + Sbjct: 9 EEDPMADDVGARLRALRNLRGISQRELAKRCGVTHSSLSLIEQGKVSPSVSSLKKILDAI 68 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLD 110 +S + ++ R + + D Sbjct: 69 PMSVGDFFTMDLESRDQVFYSADELAD 95 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ARL+++R +G+SQ E K G+ +S+LS EQG+ P + +KI + + Sbjct: 19 ARLRALRNLRGISQRELAKRCGVTHSSLSLIEQGKVSPSVSSLKKILDAIPMSVGDFFTM 78 Query: 176 D 176 D Sbjct: 79 D 79 >gi|317057522|ref|YP_004105989.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449791|gb|ADU23355.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 135 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 31/74 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ +R +Q+ +A + V+ +E G + + N + ++ D++ Sbjct: 2 NIGDKLLFLRNRVGCSQETLADALDVSRQTVSKWELGQSLPDAEKIVAISNYFNVTTDFL 61 Query: 91 YDGEVIDRRYEDVT 104 + +++ Sbjct: 62 LRDTSPVKIEKNLD 75 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R G SQ L + T+S +E G+++P+ + I D++ Sbjct: 10 LRNRVGCSQETLADALDVSRQTVSKWELGQSLPDAEKIVAISNYFNVTTDFLLRD 64 >gi|229189462|ref|ZP_04316479.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 10876] gi|228594053|gb|EEK51855.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 10876] Length = 107 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + + Q + Sbjct: 62 LHDETTRETNLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQ 106 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|257792325|ref|YP_003182931.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476222|gb|ACV56542.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 320 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ +R + M+Q + LLG+ ++S +E R PE+ K+ + + LD Sbjct: 1 MSFRDNMQHLRATRNMTQEQLAMLLGVSRQSVSKWEAERAYPEMDKLLKMCGLFECTLDE 60 Query: 172 IYFGDEVIVP 181 + GD P Sbjct: 61 LVTGDLTGRP 70 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N TQ+++A+ +V+ +E + L + +E + D + G Sbjct: 5 DNMQHLRATRNMTQEQLAMLLGVSRQSVSKWEAERAYPEMDKLLKMCGLFECTLDELVTG 64 Query: 94 E 94 + Sbjct: 65 D 65 >gi|126737472|ref|ZP_01753207.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126722057|gb|EBA18760.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 193 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + R+ +G R++++RKA + T K++A ++ E SIR + Sbjct: 5 KKRETQPIIGARMRELRKAKHLTLKQLAAETGLSIGYLSQLERQDADPSIRALNVIGKAL 64 Query: 84 EISFDWIYDG 93 + +W + G Sbjct: 65 GVGINWFFPG 74 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 33/79 (41%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 KKR IGAR++ +RK K ++ + G+ LS E+ P I+ I Sbjct: 1 MDDQKKRETQPIIGARMRELRKAKHLTLKQLAAETGLSIGYLSQLERQDADPSIRALNVI 60 Query: 162 KQVTKKHLDWIYFGDEVIV 180 + ++W + G E Sbjct: 61 GKALGVGINWFFPGPEDQE 79 >gi|317120977|ref|YP_004100980.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315590957|gb|ADU50253.1| transcriptional regulator, XRE family [Thermaerobacter marianensis DSM 12885] Length = 244 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R+A + KE+A A+ S ++ E G+ S+ A L S DW+ Sbjct: 8 VGNRIRAARQAAGLSVKELARRAHISPSHLSDIERGVKHPSLAVAATLAQILGRSLDWVV 67 Query: 92 DGEVI 96 G Sbjct: 68 AGRDP 72 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 DP A+G R+++ R+ G+S E + + S LS+ E+G P + A + Q+ + L Sbjct: 4 DPVAVGNRIRAARQAAGLSVKELARRAHISPSHLSDIERGVKHPSLAVAATLAQILGRSL 63 Query: 170 DWIYFGDEVIVP 181 DW+ G + + Sbjct: 64 DWVVAGRDPLPD 75 >gi|187778373|ref|ZP_02994846.1| hypothetical protein CLOSPO_01966 [Clostridium sporogenes ATCC 15579] gi|187771998|gb|EDU35800.1| hypothetical protein CLOSPO_01966 [Clostridium sporogenes ATCC 15579] Length = 139 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 16/120 (13%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K R + Q E+A N + V+ +ENG L + + S D+I Sbjct: 6 EIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVDYI 65 Query: 91 Y---------------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 +G + + + + +K + +++ + L Sbjct: 66 LGRSENRNGIISKANINGNNYEFELDKNIFPNGITREQMINYIKEL-EERNKELEKEADL 124 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RLK R K ++Q E K L + T+SN+E G IP+ K+ +D+I Sbjct: 6 EIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVDYI 65 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 G I +A N ++ + + DK Sbjct: 66 L-GRSENRNGIISKANINGNNYEFELDK 92 >gi|126650067|ref|ZP_01722300.1| transcriptional regulator (phage-related) protein [Bacillus sp. B14905] gi|126593239|gb|EAZ87201.1| transcriptional regulator (phage-related) protein [Bacillus sp. B14905] Length = 118 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R+KD+RK TQ ++A N ESA +E G SI L +Y++S +I Sbjct: 3 NVSQRLKDLRKEAKLTQADVAKFLNISESAYGYYEQGRNEISIGSVQKLAEKYDVSVAYI 62 Query: 91 YDGEVIDRRYEDVT 104 + + Sbjct: 63 LCETDEKQPLDKEE 76 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +RK+ ++Q + K L + S YEQGR I +K+ + + Sbjct: 1 MSNVSQRLKDLRKEAKLTQADVAKFLNISESAYGYYEQGRNEISIGSVQKLAEKYDVSVA 60 Query: 171 WIYFGDEVIVPKSIKRA 187 +I + P + A Sbjct: 61 YILCETDEKQPLDKEEA 77 >gi|300721858|ref|YP_003711136.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] gi|106635962|gb|ABF82228.1| NilR [Xenorhabdus nematophila] gi|297628353|emb|CBJ88916.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] Length = 101 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ RK + T +A + ++ +E G ++ + + + + E DW + Sbjct: 8 VGQRIQTKRKELSITATALAKQIGISQQQLSRYERGTNRINLDHLVVIADILETPIDWFF 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 ++ + T K D Y A Sbjct: 68 LDCNKSKKKDGSTVNKITDQYIPIA 92 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+++ RK+ ++ K +G+ LS YE+G + I + + +DW + Sbjct: 10 QRIQTKRKELSITATALAKQIGISQQQLSRYERGTNRINLDHLVVIADILETPIDWFFLD 69 >gi|148263053|ref|YP_001229759.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396553|gb|ABQ25186.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 181 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R N+ TQ+E+A A+ + ++ EN S SI + + + +S Sbjct: 2 KIGERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQEF 61 Query: 91 Y 91 + Sbjct: 62 F 62 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK +R ++Q E + +S E T P I + I V + Sbjct: 1 MKIGERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + + I K + DK Sbjct: 61 FFS---EVTDEDIVFGKDARVQATDDDDK 86 >gi|300777929|ref|ZP_07087787.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300503439|gb|EFK34579.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 262 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I+ +R +Q+ +A + +ENG+ I + + + +S D I Sbjct: 6 NNIRFLRARRKLSQQNVADELMISRVRYSKYENGISEPPIELLVKISKYFHVSIDLILSV 65 Query: 94 EVIDRRYEDVTN 105 ++ +++ Sbjct: 66 DLEKHPVDEMLK 77 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ +R + +SQ L + S YE G + P I+ KI + +D Sbjct: 1 MSVFSNNIRFLRARRKLSQQNVADELMISRVRYSKYENGISEPPIELLVKISKYFHVSID 60 Query: 171 WIYFGDEVIVP 181 I D P Sbjct: 61 LILSVDLEKHP 71 >gi|257139965|ref|ZP_05588227.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 185 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSESR 64 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 65 DRELITVTRA 74 >gi|253579354|ref|ZP_04856624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849452|gb|EES77412.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 298 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 44/82 (53%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + RK GM+Q + + LGM + ++S +E+G +P++ +++ + Sbjct: 1 MDLIKIGKYIAGKRKSLGMTQKQLAEKLGMSDKSVSKWERGVCLPDVSVYKELCSILGIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 L+ G+++ I++++ N Sbjct: 61 LNEFLAGEDIAQENMIQKSETN 82 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 5/94 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I RK+ TQK++A + +V+ +E G+C + L + IS + Sbjct: 5 KIGKYIAGKRKSLGMTQKQLAEKLGMSDKSVSKWERGVCLPDVSVYKELCSILGISLNEF 64 Query: 91 YDGEVIDRRYEDVTNKKRL-----DPYAIGARLK 119 GE I + ++ + D LK Sbjct: 65 LAGEDIAQENMIQKSETNIIEVIRDNIDKQKCLK 98 >gi|167618211|ref|ZP_02386842.1| DNA-binding protein [Burkholderia thailandensis Bt4] Length = 185 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSESR 64 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 65 DRELITVTRA 74 >gi|126179356|ref|YP_001047321.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862150|gb|ABN57339.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 72 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R ++ TQ+E+A +N E G + SI A + + ++ + ++ Sbjct: 3 NRIKVFRAMHDMTQEELADAIRVTRRTINSIERGKYNPSIEVAYRIAKTFGVTIEEVFCF 62 Query: 94 EVIDRRYED 102 E + + Sbjct: 63 EDGEDTEDR 71 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R M+Q E + + T+++ E+G+ P I+ A +I + ++ ++ Sbjct: 1 MKNRIKVFRAMHDMTQEELADAIRVTRRTINSIERGKYNPSIEVAYRIAKTFGVTIEEVF 60 Query: 174 FGDE 177 ++ Sbjct: 61 CFED 64 >gi|307947017|ref|ZP_07662352.1| transcriptional regulator [Roseibium sp. TrichSKD4] gi|307770681|gb|EFO29907.1| transcriptional regulator [Roseibium sp. TrichSKD4] Length = 207 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 33/99 (33%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 + Q+ + + +G +++ RK T E++ + ++ ENG S Sbjct: 2 TEFFQDPHSVREEREKVLEVAIGRKVRSFRKQRGITVAELSKLTDLSVGMLSKIENGNTS 61 Query: 71 TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 S+ L + ++ G R K + Sbjct: 62 PSLTTLQNLSRALSVPLTALFKGYEERREAIHTKAGKGV 100 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E + ++++ AIG +++S RK +G++ E KL + LS E G T P Sbjct: 3 EFFQDPHSVREEREKVLEVAIGRKVRSFRKQRGITVAELSKLTDLSVGMLSKIENGNTSP 62 Query: 154 EIKPARKIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKK 198 + + + + L ++ G +E K KG + + + Sbjct: 63 SLTTLQNLSRALSVPLTALFKGYEERREAIHTKAGKGVEIERDGTR 108 >gi|261368648|ref|ZP_05981531.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569235|gb|EFB74770.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 232 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +RK TQK+ A ++ ++ +E G+ + + + + + Y +S D++ Sbjct: 12 LRKERGITQKQAAQDLGISQAQLSHYEKGIRECGLAFVVQVADYYGVSCDYLL 64 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L +RK++G++Q + + LG+ + LS+YE+G + ++ D+ Sbjct: 3 MEFNRILTLLRKERGITQKQAAQDLGISQAQLSHYEKGIRECGLAFVVQVADYYGVSCDY 62 Query: 172 IY 173 + Sbjct: 63 LL 64 >gi|209886139|ref|YP_002289996.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209874335|gb|ACI94131.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 485 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 13/118 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + +RK N +Q ++A G S +NL E + + L L Y++ + Sbjct: 13 VGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQRPVTAQMLLRLAETYDLDLRDL- 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNY 146 + R+ N+ DP L + +R + +L G+ ++ Y Sbjct: 72 -ATSDEDRFFAELNEIFSDPLFRQIDLPKQELR--------DLAELCPGVTHALQRVY 120 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + +RK +SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 18 RRLRKQLNLSQTQIAEGLGLSPSYINLIERNQRPVTAQMLLRLAETYDLDLRDLATSDED 77 >gi|42779243|ref|NP_976490.1| hypothetical protein BCE_0162 [Bacillus cereus ATCC 10987] gi|42735158|gb|AAS39098.1| Unknown-related protein [Bacillus cereus ATCC 10987] Length = 64 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K IR TQ E+A N + L E G + S+ + + ++ + ++ E Sbjct: 4 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEQGAYNPSLNLCIKICQTLGVTLNDLFWEE 63 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K IR +KGM+Q E KL + T+ EQG P + KI Q L+ +++ + Sbjct: 5 VKRIRLEKGMTQGELAKLTNVSRQTIGLIEQGAYNPSLNLCIKICQTLGVTLNDLFWEE 63 >gi|76787968|ref|YP_330681.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae A909] gi|77406878|ref|ZP_00783904.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B] gi|76563025|gb|ABA45609.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae A909] gi|77174510|gb|EAO77353.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B] Length = 204 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 29/85 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQ+E+A + + +ENG A L + +S ++ Sbjct: 2 NRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLLGY 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + L Sbjct: 62 APNKKIDFQLNLDGTTLHLTKEQFL 86 Score = 57.7 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +RK+K ++Q E +G+ T+ +E G + A+++ + + ++ Sbjct: 1 MNRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLL 59 >gi|332298497|ref|YP_004440419.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181600|gb|AEE17288.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 115 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RIK R +N +Q+E+A + ++ E G S+ + + + +IS D Sbjct: 10 YAAIGRRIKKYRWESNISQEELADAVGVSTTHMSHIETGGTKLSLGVFVKIADALQISAD 69 Query: 89 WIYDGE 94 + +G+ Sbjct: 70 LLLNGD 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 K +D AIG R+K R + +SQ E +G+ + +S+ E G T + KI Sbjct: 1 MNCIGKEIDYAAIGRRIKKYRWESNISQEELADAVGVSTTHMSHIETGGTKLSLGVFVKI 60 Query: 162 KQVTKKHLDWIYFGD 176 + D + GD Sbjct: 61 ADALQISADLLLNGD 75 >gi|309777433|ref|ZP_07672391.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] gi|308914829|gb|EFP60611.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] Length = 83 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 42/80 (52%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G ++++RK TQ ++A+ ++AV+++E G+ +R + L +E + D Sbjct: 3 RVIGMMLRELRKKRGLTQAQLAMMLKVDQTAVSMWERGITQPRMRKCIELVAIFECTLDD 62 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 ++ + D ++ N + + Sbjct: 63 LFLNDEEDEFEKEKGNLQGM 82 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 35/61 (57%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG L+ +RK +G++Q + +L + + +S +E+G T P ++ ++ + + LD + Sbjct: 4 VIGMMLRELRKKRGLTQAQLAMMLKVDQTAVSMWERGITQPRMRKCIELVAIFECTLDDL 63 Query: 173 Y 173 + Sbjct: 64 F 64 >gi|270307510|ref|YP_003329568.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] gi|270153402|gb|ACZ61240.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] Length = 72 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G RI+++RK +Q+E+A A + + E G + S++ + + Sbjct: 4 EKTIEQRFGERIRNLRKQAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISKALK 63 Query: 85 ISFDWIYD 92 + ++ Sbjct: 64 VPVSDLFK 71 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R++++RK G+SQ E G+ + L E+G P +K I + K + ++ Sbjct: 11 FGERIRNLRKQAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISKALKVPVSDLF 70 Query: 174 F 174 Sbjct: 71 K 71 >gi|257892810|ref|ZP_05672463.1| predicted protein [Enterococcus faecium 1,231,408] gi|257829189|gb|EEV55796.1| predicted protein [Enterococcus faecium 1,231,408] Length = 163 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 28/85 (32%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +RK + TQ+E+A V+ +ENG L Y + Sbjct: 21 KKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHENVYCLAKLYGQTLSIFLPD 80 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + +R+ L Sbjct: 81 LPEAPMKAEEISSERIQLIRFFICL 105 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 +K + +LK +RK+ G +Q E K L + T+SN+E GR+ P+ + + + Sbjct: 9 NERKSIYEGFFSKKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHENVYCLAK 68 Query: 164 VTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + + L I+ D P + + Sbjct: 69 LYGQTLS-IFLPDLPEAPMKAEEISSER 95 >gi|228932646|ref|ZP_04095521.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827018|gb|EEM72777.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 156 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K +R KG +Q + LG+ + +SN+E+ T P + K+ +V +D+I Sbjct: 5 TENKIKELRIAKGWTQKSLAEKLGVSSQVISNWERAYTSPNQEDLIKLAKVFNVTIDYIL 64 Query: 174 FGDEVI-VPKSIKRAKGNQSSKKSKKDKKS 202 D++I + I++ SS K+D+K Sbjct: 65 SSDKIINLNYDIEKITEYVSSSMLKQDEKE 94 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++R A TQK +A ++ +E S + + L + ++ D+I Sbjct: 7 NKIKELRIAKGWTQKSLAEKLGVSSQVISNWERAYTSPNQEDLIKLAKVFNVTIDYILSS 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKS 120 + I D+ +++ Y + LK Sbjct: 67 DKIINLNYDI---EKITEYVSSSMLKQ 90 >gi|228991352|ref|ZP_04151308.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] gi|228997428|ref|ZP_04157047.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|229005073|ref|ZP_04162797.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228756175|gb|EEM05496.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228762304|gb|EEM11231.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|228768370|gb|EEM16977.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] Length = 181 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 ++G ++K++R+ + +E+A A S ++ E G+ + SI+ L E+ + Sbjct: 5 NIGKKVKELREYKELSMRELAKMAEITPSMLSQIERGLANPSIQTLKLLAKALEVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LIEDTNTDDLVIRANARKKM 84 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG ++K +R+ K +S E K+ + S LS E+G P I+ + + + + Sbjct: 1 MENINIGKKVKELREYKELSMRELAKMAEITPSMLSQIERGLANPSIQTLKLLAKALEVP 60 Query: 169 LDWIYFGDEVIVPKSIK 185 D I+ Sbjct: 61 TFSFLIEDTNTDDLVIR 77 >gi|218551631|ref|YP_002385423.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469] gi|218359173|emb|CAQ91836.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469] Length = 208 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RIK +R+ +QKE+ + AV +E + L + S D Sbjct: 1 METVGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINVPGGEALSKLAKFFNTSID 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +I G + + + + + + R Sbjct: 61 YILYGAEFEGKLVTNMRRVPVISWVQAGQFTECR 94 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K++R+ SQ E GK G+ + + +E+ +P + K+ + +D+I +G Sbjct: 6 QRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINVPGGEALSKLAKFFNTSIDYILYG 65 Query: 176 DE 177 E Sbjct: 66 AE 67 >gi|170761839|ref|YP_001788364.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408828|gb|ACA57239.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 136 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 16/122 (13%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ R+K R + Q E+A N + V+ +ENG L + + S D Sbjct: 1 MAEIKDRLKYERLRKDLNQTELAKILNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD 60 Query: 89 WIY---------------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 +I DG + + + + +K + +++ + Sbjct: 61 YILGRSENRNGIISKANIDGSNYEFELDKSIFPNGITREQMINYIKEL-EERNKELEKEA 119 Query: 134 KL 135 ++ Sbjct: 120 EI 121 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RLK R K ++Q E K+L + T+SN+E G IP+ K+ +D Sbjct: 1 MAEIKDRLKYERLRKDLNQTELAKILNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 +I G I +A + S+ + + DK Sbjct: 61 YIL-GRSENRNGIISKANIDGSNYEFELDK 89 >gi|27467714|ref|NP_764351.1| hypothetical protein SE0796 [Staphylococcus epidermidis ATCC 12228] gi|57866618|ref|YP_188269.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|251810551|ref|ZP_04825024.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|293366914|ref|ZP_06613589.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315258|gb|AAO04393.1|AE016746_183 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637276|gb|AAW54064.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|251805962|gb|EES58619.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|291318889|gb|EFE59260.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329732828|gb|EGG69174.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] gi|329734233|gb|EGG70549.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] gi|329735546|gb|EGG71834.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 179 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +++++R+ N TQ+E+A + + ++ E+ S S+ L L S Sbjct: 2 DIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + D Y G L + Sbjct: 62 FKEPSDEKVLYKKKEQTIYDEYDKGYILNWL 92 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R+ K ++Q E + + +S E P ++ + +V Sbjct: 1 MDIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + E K + + K + K Sbjct: 61 FF--KEPSDEKVLYKKKEQTIYDEYDKGY 87 >gi|14520844|ref|NP_126319.1| repressor protein, putative [Pyrococcus abyssi GE5] gi|5458060|emb|CAB49550.1| Helix-turn-helix repressor protein family [Pyrococcus abyssi GE5] Length = 73 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 38/69 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ R+ G++Q E ++LG+ T+ E+G+ P ++ A KI + ++ I+ Sbjct: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60 Query: 174 FGDEVIVPK 182 +E + P+ Sbjct: 61 IYEEELTPR 69 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++ R+ TQ+E+A + E G S+R A + + + + I+ Sbjct: 3 NRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIFIY 62 Query: 94 EVI 96 E Sbjct: 63 EEE 65 >gi|85711642|ref|ZP_01042699.1| DNA-binding protein [Idiomarina baltica OS145] gi|85694502|gb|EAQ32443.1| DNA-binding protein [Idiomarina baltica OS145] Length = 63 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N TQ ++A + +N E G S+ A + ++ + + ++ Sbjct: 3 NRLKVLRAERNWTQNDLAQALSVSRQTINAIETGKFDPSLPLAFKIAKVFQCTIEDVFSD 62 Query: 94 E 94 + Sbjct: 63 D 63 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + + L + T++ E G+ P + A KI +V + ++ ++ Sbjct: 1 MKNRLKVLRAERNWTQNDLAQALSVSRQTINAIETGKFDPSLPLAFKIAKVFQCTIEDVF 60 Query: 174 FGD 176 D Sbjct: 61 SDD 63 >gi|116688944|ref|YP_834567.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116647033|gb|ABK07674.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 132 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGT I + R+A TQ ++A + + AV+ +E G ++ L + S D + Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAVSRWERGTRVPTLHRLQQLSDALNCSVDQLL 80 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + LD R+ +F +L Sbjct: 81 QRGSKRPDDQLAMIADALDGLDSDE-----RELVVNFVQQFADML 120 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 28/56 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+ +G++Q + +++ + +S +E+G +P + +++ +D + Sbjct: 25 IAEQRRARGLTQAKLAEMIDLEQEAVSRWERGTRVPTLHRLQQLSDALNCSVDQLL 80 >gi|328944738|gb|EGG38899.1| transcription regulator [Streptococcus sanguinis SK1087] Length = 136 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQILKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQILKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|327191632|gb|EGE58643.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 225 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 27/85 (31%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P+ +G ++ RK T ++A ++ ENG S S+ Sbjct: 21 QDPHAVREPKENNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLT 80 Query: 75 YALYLRNEYEISFDWIYDGEVIDRR 99 L + + R Sbjct: 81 TLQSLSRALGVPLTAFFRRYEEPRN 105 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + L+ AIG +++ RK G++ + G+ LS E G P Sbjct: 20 SQDPHAVREPKENNLE-MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPS 78 Query: 155 IKPARKIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + L + +E +K +G + ++ + N Sbjct: 79 LTTLQSLSRALGVPLTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYN 129 >gi|257784647|ref|YP_003179864.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473154|gb|ACV51273.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 142 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 27/69 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++RK ++ +Q+E+A ++ +E G I N + ++ D + Sbjct: 3 FAENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKRFANVFGVTIDDLI 62 Query: 92 DGEVIDRRY 100 + + Sbjct: 63 SYDKKNEDN 71 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L +RK SQ E ++G+ TLS YE G ++P+I+ ++ V +D Sbjct: 1 MSFAENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKRFANVFGVTIDD 60 Query: 172 IYFGDE 177 + D+ Sbjct: 61 LISYDK 66 >gi|260587016|ref|ZP_05852929.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM 20583] gi|260542638|gb|EEX23207.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM 20583] Length = 120 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 36/94 (38%), Gaps = 5/94 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK+ +Q E+ ++ +E + + L + + +S D + Sbjct: 2 NFNEKLIELRKSKGLSQDELGNALGVSRQTISKWELAQSYPDFQRLVLLSDYFGLSLDAL 61 Query: 91 YDGEVIDRRYEDVTNKKRL-----DPYAIGARLK 119 + ++K+L D + + +K Sbjct: 62 VKDIDVQDVRSKNLSEKQLSSIYEDISSAKSTIK 95 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L +RK KG+SQ E G LG+ T+S +E ++ P+ + + LD Sbjct: 1 MNFNEKLIELRKSKGLSQDELGNALGVSRQTISKWELAQSYPDFQRLVLLSDYFGLSLDA 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + +V +S ++ SS Sbjct: 61 LVKDIDVQDVRSKNLSEKQLSS 82 >gi|218515232|ref|ZP_03512072.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 238 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 27/85 (31%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P+ +G ++ RK T ++A ++ ENG S S+ Sbjct: 34 QDPHAVREPKENNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLT 93 Query: 75 YALYLRNEYEISFDWIYDGEVIDRR 99 L + + R Sbjct: 94 TLQSLSRALGVPLTAFFRRYEEPRN 118 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + L+ AIG +++ RK G++ + G+ LS E G P Sbjct: 33 SQDPHAVREPKENNLE-MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPS 91 Query: 155 IKPARKIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + L + +E +K +G + ++ + N Sbjct: 92 LTTLQSLSRALGVPLTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYN 142 >gi|218508625|ref|ZP_03506503.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 225 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 27/85 (31%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P+ +G ++ RK T ++A ++ ENG S S+ Sbjct: 21 QDPHAVREPKENNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLT 80 Query: 75 YALYLRNEYEISFDWIYDGEVIDRR 99 L + + R Sbjct: 81 TLQSLSRALGVPLTAFFRRYEEPRN 105 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + L+ AIG +++ RK G++ + G+ LS E G P Sbjct: 20 SQDPHAVREPKENNLE-MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPS 78 Query: 155 IKPARKIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + L + +E +K +G + ++ + N Sbjct: 79 LTTLQSLSRALGVPLTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYN 129 >gi|190895653|ref|YP_001985945.1| transcriptional regulator [Rhizobium etli CIAT 652] gi|190699598|gb|ACE93682.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 231 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 27/85 (31%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P+ +G ++ RK T ++A ++ ENG S S+ Sbjct: 23 QDPHAVREPKENNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLT 82 Query: 75 YALYLRNEYEISFDWIYDGEVIDRR 99 L + + R Sbjct: 83 TLQSLSRALGVPLTAFFRRYEEPRN 107 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + L+ AIG +++ RK G++ + G+ LS E G P Sbjct: 22 SQDPHAVREPKENNLE-MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPS 80 Query: 155 IKPARKIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + L + +E +K +G + ++ + N Sbjct: 81 LTTLQSLSRALGVPLTAFFRRYEEPRNAVFVKAGEGVELERRGTRAGHQYN 131 >gi|169335357|ref|ZP_02862550.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis DSM 17244] gi|169258095|gb|EDS72061.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis DSM 17244] Length = 138 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +KD+RK N TQ++++ A+ +E G + L L N Y I+ D + Sbjct: 4 KNLKDLRKNNGLTQEQLSEKIGVSRQAIGKWEKGESIPDLYSILELSNVYSITIDTLVR 62 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I LK +RK+ G++Q + + +G+ + +E+G +IP++ ++ V +D + Sbjct: 1 MIYKNLKDLRKNNGLTQEQLSEKIGVSRQAIGKWEKGESIPDLYSILELSNVYSITIDTL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|150021356|ref|YP_001306710.1| XRE family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149793877|gb|ABR31325.1| transcriptional regulator, XRE family [Thermosipho melanesiensis BI429] Length = 72 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 29/57 (50%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++++R+ TQ+++A + ++ +E G S+ A+ L +S + +++ Sbjct: 3 LRELREKKMLTQQQLAKLIGVTQRTISAYEIGQAKPSLDVAIRLAKALGVSVEDVFE 59 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 32/58 (55%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R+ K ++Q + KL+G+ T+S YE G+ P + A ++ + ++ ++ Sbjct: 1 MTLRELREKKMLTQQQLAKLIGVTQRTISAYEIGQAKPSLDVAIRLAKALGVSVEDVF 58 >gi|110677426|ref|YP_680433.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453542|gb|ABG29747.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 215 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 +T K +Q+ + + +G ++ RK T E++ + ++ EN Sbjct: 6 TKTMTKLIQDPHGVREEREKVLEVAIGREVRAYRKQKGMTVAELSRLTDLSIGMLSKIEN 65 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDG 93 G S S+ L N + + G Sbjct: 66 GNTSPSLTTLQALANALSVPLTAFFKG 92 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG +++ RK KGM+ E +L + LS E G T P + + + L Sbjct: 30 AIGREVRAYRKQKGMTVAELSRLTDLSIGMLSKIENGNTSPSLTTLQALANALSVPLTAF 89 Query: 173 YFGDEVIVPKSIKRA 187 + G E +A Sbjct: 90 FKGFEEHREAVHTKA 104 >gi|89055144|ref|YP_510595.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864693|gb|ABD55570.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 133 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 4/107 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R+A +Q E+A + +E L +S W+ Sbjct: 19 FGDRVTGAREAAGLSQPELAKRLGVRVKTIRAWEQDQSEPRANKLGTLAGILGVSMMWLL 78 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 G+ ++++ D I L+ +R+ Q+ + +G+ Sbjct: 79 AGQGEGLDSPELSDPLDGDIEKILIDLRQMRQ----EQVSLAERMGL 121 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ G+SQ E K LG+ T+ +EQ ++ P + + + W+ G Sbjct: 26 AREAAGLSQPELAKRLGVRVKTIRAWEQDQSEPRANKLGTLAGILGVSMMWLLAG 80 >gi|299134624|ref|ZP_07027816.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298590434|gb|EFI50637.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 485 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 13/130 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + +RK N +Q ++A G S +NL E + + L L Y++ + Sbjct: 13 VGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQRPVTAQMLLRLAETYDLDLRDL- 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQ 148 + R+ N+ DP L + +R + +L G+ ++ Y Sbjct: 72 -ATSDEDRFFAELNEIFSDPLFRQIDLPKQELR--------DLAELCPGVTHALQRVYAA 122 Query: 149 GRTIPEIKPA 158 + Sbjct: 123 YTEARRGETL 132 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + +RK +SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 18 RRLRKQLNLSQTQIAEGLGLSPSYINLIERNQRPVTAQMLLRLAETYDLDLRDLATSDED 77 >gi|257868500|ref|ZP_05648153.1| DNA binding protein [Enterococcus gallinarum EG2] gi|257802664|gb|EEV31486.1| DNA binding protein [Enterococcus gallinarum EG2] Length = 70 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R++ IR+ +Q E+A +N E + S+ AL + + +++S + ++ Sbjct: 5 NRLRSIREEQGLSQGELAAIMGVSRQTINAIETHKYNPSLELALRIAHYFKLSVEELFK 63 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL+SIR+++G+SQ E ++G+ T++ E + P ++ A +I K ++ Sbjct: 1 MPVINRLRSIREEQGLSQGELAAIMGVSRQTINAIETHKYNPSLELALRIAHYFKLSVEE 60 Query: 172 IYF 174 ++ Sbjct: 61 LFK 63 >gi|229065703|ref|ZP_04200928.1| hypothetical protein bcere0026_57030 [Bacillus cereus AH603] gi|228715566|gb|EEL67366.1| hypothetical protein bcere0026_57030 [Bacillus cereus AH603] Length = 108 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+ ++RK TQ ++A N + +E G + + + Y +S D + Sbjct: 3 QLSKRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKTDPDADSIMSIADLYNVSIDEL 62 Query: 91 YDGEVI 96 + Sbjct: 63 FGRNAP 68 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK +G +Q + L + +T +N+E G+T P+ I + +D Sbjct: 1 MSQLSKRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKTDPDADSIMSIADLYNVSID 60 Query: 171 WIYFGDEVIVPK--SIKRAKGNQSSKKSKK 198 ++ + + K SIK A + S +K ++ Sbjct: 61 ELFGRNAPLESKLESIKVAASDLSPQKQQE 90 >gi|163940192|ref|YP_001645076.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229060070|ref|ZP_04197441.1| Transcriptional regulator, XRE [Bacillus cereus AH603] gi|163862389|gb|ABY43448.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228719289|gb|EEL70897.1| Transcriptional regulator, XRE [Bacillus cereus AH603] Length = 197 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 17 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 76 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + S Sbjct: 77 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNGYA---NTTES 133 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 S+ ++ I K +V L+ ++ GD V +P ++K N+S + + Sbjct: 134 HYSHEDKEE----IAVVMK-GEVY-VELEGNEYFLEEGDVVRIPPNVKHRFLNKSDEMN 186 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 1/102 (0%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 Y+ + Y +G + S RK M+ EF G+ S +S E+G P + Sbjct: 1 MYYDGRKEVVTMIHYRLGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNV 60 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 I + L ++ D + I + K + + D Sbjct: 61 LELIAKALNVPLFTLFIND-IDTDSLISKKKDRKKVYRENND 101 >gi|260889935|ref|ZP_05901198.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] gi|260860541|gb|EEX75041.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] Length = 183 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I ++ KD +K +R TQK +A N S ++ +E G S Y + +E Sbjct: 4 IMEFKKDFKNLLKKLRTEKRLTQKALADKINIPVSMISKYEQGTNKPSFSYLSKICRFFE 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 + D+ Y ++ D Sbjct: 64 VELDYFLVRSEQQNDYLNLVLDILND 89 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R +K ++Q + +P S +S YEQG P KI + + LD+ Sbjct: 11 FKNLLKKLRTEKRLTQKALADKINIPVSMISKYEQGTNKPSFSYLSKICRFFEVELDYFL 70 Query: 174 FGDEVIVP 181 E Sbjct: 71 VRSEQQND 78 >gi|229815890|ref|ZP_04446214.1| hypothetical protein COLINT_02946 [Collinsella intestinalis DSM 13280] gi|229808585|gb|EEP44363.1| hypothetical protein COLINT_02946 [Collinsella intestinalis DSM 13280] Length = 238 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 29/87 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI+ +R+ +Q +A V +E G L + I+ D + Sbjct: 37 LAKRIRGLREGAGISQARLAKLVFVSRQTVINWEKGRTLPDAESLKRLSAAFGITLDALL 96 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D + + +++ + L Sbjct: 97 DERSEEYLRQTARDRRTIKVAITLNFL 123 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R+ G+SQ KL+ + T+ N+E+GRT+P+ + +++ LD + Sbjct: 39 KRIRGLREGAGISQARLAKLVFVSRQTVINWEKGRTLPDAESLKRLSAAFGITLDALL-- 96 Query: 176 DEVIVPKSIKRAKGNQSSK 194 DE + A+ ++ K Sbjct: 97 DERSEEYLRQTARDRRTIK 115 >gi|115523415|ref|YP_780326.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517362|gb|ABJ05346.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 480 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 9/128 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + +R+ +Q +MA G S +NL E + + L L Y++ + Sbjct: 11 VGPRFRRLRQQMGLSQTQMAEGLGISPSYINLIERNQRPVTAQILLRLAENYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGR 150 + R+ N+ DP L + +L G+ +S Y Sbjct: 70 -ATADEDRFFAELNEIFSDPLFRQIDLPK------QELKDLAELCPGVTHSLQRLYAAYI 122 Query: 151 TIPEIKPA 158 + Sbjct: 123 EARRGETL 130 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + +R+ G+SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRLRQQMGLSQTQMAEGLGISPSYINLIERNQRPVTAQILLRLAENYDLDLRDLATADED 75 >gi|328956479|ref|YP_004373865.1| hypothetical protein CAR_c00980 [Carnobacterium sp. 17-4] gi|328672803|gb|AEB28849.1| hypothetical protein CAR_c00980 [Carnobacterium sp. 17-4] Length = 66 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K R +Q ++A + +++ +EN + + + L Y++S D + Sbjct: 3 LGEKLKSSRVKKGFSQNDVAEELHISRQSISKWENDISYPDLDNLVKLSTYYQVSTDHLL 62 Query: 92 D 92 Sbjct: 63 K 63 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +LKS R KG SQ + + L + ++S +E + P++ K+ + D + Sbjct: 5 EKLKSSRVKKGFSQNDVAEELHISRQSISKWENDISYPDLDNLVKLSTYYQVSTDHLLKE 64 Query: 176 D 176 + Sbjct: 65 N 65 >gi|225574085|ref|ZP_03782696.1| hypothetical protein RUMHYD_02147 [Blautia hydrogenotrophica DSM 10507] gi|225038685|gb|EEG48931.1| hypothetical protein RUMHYD_02147 [Blautia hydrogenotrophica DSM 10507] Length = 153 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 36/104 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + RK +Q+++A ++ +E I + + Y +S D + Sbjct: 2 NLGNSLFHARKKRGLSQEDVAEKLGVSRQTISKWETNETVPDIYQSKRMAMLYNMSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 D ++ R ++V +K + K + Sbjct: 62 IDFDIDIREIQEVIDKTNEKTEEKINWTNAWGKKYPILLKYQAD 105 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 41/85 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G L RK +G+SQ + + LG+ T+S +E T+P+I ++++ + LD Sbjct: 1 MNLGNSLFHARKKRGLSQEDVAEKLGVSRQTISKWETNETVPDIYQSKRMAMLYNMSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + D I K N+ +++ Sbjct: 61 LIDFDIDIREIQEVIDKTNEKTEEK 85 >gi|167590249|ref|ZP_02382637.1| putative transcription regulator protein [Burkholderia ubonensis Bu] Length = 217 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P + + R++ +R T +A + S ++L E G S + L Sbjct: 9 APADSDVNERIARRVRALRATRGHTLDALAARSGVSRSMISLIERGAASPTAVVLDKLAA 68 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 +S ++DG D + + + + + A Sbjct: 69 GLGVSLASLFDGAPDDAPAQPLVRRAQQAQWRDPA 103 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G + G+ S +S E+G P K+ L ++ G Sbjct: 21 RRVRALRATRGHTLDALAARSGVSRSMISLIERGAASPTAVVLDKLAAGLGVSLASLFDG 80 Query: 176 --DEVIVPKSIKRAKGNQ 191 D+ ++RA+ Q Sbjct: 81 APDDAPAQPLVRRAQQAQ 98 >gi|116871710|ref|YP_848491.1| transcriptional repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740588|emb|CAK19708.1| transcriptional repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 68 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 33/65 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I+ IR+ N+ TQ++MA N ++ + +E G + + + + +++S D++ D Sbjct: 4 RNIRSIREDNDITQQQMAKLLNVSQNTYSQYETGKIEWTATALIKIADYFDVSVDYLLDR 63 Query: 94 EVIDR 98 + Sbjct: 64 KKNKN 68 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++SIR+D ++Q + KLL + +T S YE G+ KI +D++ Sbjct: 1 MKYRNIRSIREDNDITQQQMAKLLNVSQNTYSQYETGKIEWTATALIKIADYFDVSVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|147678924|ref|YP_001213139.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146275021|dbj|BAF60770.1| predicted transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 171 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI++IRK N TQ E A ++ V+ E S S Y+ + +S W+ Sbjct: 4 GARIQEIRKTLNLTQAEFAEKLRISQAHVSKIEKDQISPSELLLSYICCNFHVSRKWLDT 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL 118 G+ + K ++ + A L Sbjct: 64 GQGEMFISPERILKNQMARFGEQAFL 89 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF- 174 AR++ IRK ++Q EF + L + + +S E+ + P I W+ Sbjct: 5 ARIQEIRKTLNLTQAEFAEKLRISQAHVSKIEKDQISPSELLLSYICCNFHVSRKWLDTG 64 Query: 175 -GDEVIVPKSIKRAKGNQ 191 G+ I P+ I + + + Sbjct: 65 QGEMFISPERILKNQMAR 82 >gi|89892828|ref|YP_516315.1| hypothetical protein DSY0082 [Desulfitobacterium hafniense Y51] gi|89332276|dbj|BAE81871.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 68 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +++ +R+ TQKE+ A+N E G S+ A L +++S + ++ Sbjct: 3 NKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFDPSLWLAYDLAKLFKVSIEELF 60 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 35/68 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +++ +R++ G++Q E G+ +G+ ++ E G+ P + A + ++ K ++ ++ Sbjct: 1 MHNKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFDPSLWLAYDLAKLFKVSIEELF 60 Query: 174 FGDEVIVP 181 E Sbjct: 61 LFIEEDRK 68 >gi|37524226|ref|NP_927570.1| hypothetical protein plu0206 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783649|emb|CAE12501.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 100 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 PF E L++ + Q K + ++KD RKA + TQ+++A + ++ Sbjct: 10 PFSEAKTLLLEDAATLEAYNDIQIRKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRM 69 Query: 65 ENGMCSTSIRYALYLRNEYE 84 ENG ++ Sbjct: 70 ENGKSVPNLDTLSRYAAALG 89 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 A+ +LK RK ++Q + + +G +S E G+++P + + Sbjct: 36 ALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLDTLSRYAAALG 89 >gi|147668743|ref|YP_001213561.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269691|gb|ABQ16683.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 210 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK++R+ Q E+A A S++ E G + ++ + + ++ + + Sbjct: 3 NLGLIIKELRERRGWPQTELADRAGISRSSLATIEIGRSVPKVETSIKIAKVFGMTVEEL 62 Query: 91 YDGEVIDRRYEDVTNKKRL 109 Y + V + + Sbjct: 63 YSKAGYETGKTVVETTEDI 81 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K +R+ +G Q E G+ S+L+ E GR++P+++ + KI +V ++ +Y Sbjct: 8 IKELRERRGWPQTELADRAGISRSSLATIEIGRSVPKVETSIKIAKVFGMTVEELY 63 >gi|291283823|ref|YP_003500641.1| hypothetical protein G2583_3129 [Escherichia coli O55:H7 str. CB9615] gi|290763696|gb|ADD57657.1| hypothetical protein G2583_3129 [Escherichia coli O55:H7 str. CB9615] Length = 224 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 1/99 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R K R TQ E+A A + ++ E+G R L L + S DW+ Sbjct: 20 LAARFKARRLELGMTQVEVANSAGVSQQSIESIESGRTR-KPRNLLDLAKALKCSPDWLL 78 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 +G+ I E T + + Y L R ++ Sbjct: 79 NGKNIMPLAEISTRRIPILSYVQAGELTEARDITDLTGE 117 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + +R +P ++ AR K+ R + GM+Q+E G+ ++ + E GRT + + Sbjct: 7 YTLIQPRRTNPMSLAARFKARRLELGMTQVEVANSAGVSQQSIESIESGRTR-KPRNLLD 65 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAK 188 + + K DW+ G ++ I + Sbjct: 66 LAKALKCSPDWLLNGKNIMPLAEISTRR 93 >gi|261822660|ref|YP_003260766.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261606673|gb|ACX89159.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 154 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 35/111 (31%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L N Sbjct: 2 KKSLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALS 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + D ++ D L S R + + Sbjct: 62 VEPWQLLAPDSSDDTDLELLVPYAADGSCFNPGLASSRDGSFAVGEKIAQK 112 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+K +R GMSQ F G S +S E+G + + + Sbjct: 7 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWQ 66 Query: 172 IYFGD 176 + D Sbjct: 67 LLAPD 71 >gi|229011119|ref|ZP_04168312.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] gi|228750002|gb|EEL99834.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] Length = 181 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELAKMAKITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEENNTDDLIVRSHKRKKM 84 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E K+ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELAKMAKITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 + ++ K + Sbjct: 61 TFSFLLEENNTDDLIVRSHKRKK 83 >gi|167757680|ref|ZP_02429807.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC 35704] gi|167664700|gb|EDS08830.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC 35704] Length = 76 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++ +R+ ++ +QK +A ++ + +E G S + Y + L Y +S D++ Sbjct: 13 DRLRALREDSDLSQKTIADYLGIGQTTYSQYELGKRSMPVEYIIRLCQFYNVSADYML 70 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RL+++R+D +SQ LG+ +T S YE G+ ++ ++ Q D Sbjct: 8 YMIYRDRLRALREDSDLSQKTIADYLGIGQTTYSQYELGKRSMPVEYIIRLCQFYNVSAD 67 Query: 171 WIY 173 ++ Sbjct: 68 YML 70 >gi|148807463|gb|ABR13534.1| phage-related DNA-binding protein [Pseudomonas aeruginosa] Length = 400 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 32/89 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R A+ TQ+ +A ++ +E G + + + +S W+ + Sbjct: 11 ERLKQLRSASGLTQEGLAELIGCSAGNISKWETGSSYPTAPSFHKICEFFGVSESWLLEK 70 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + + ++ I + R Sbjct: 71 PIKSGFLRPSFFRSQVTTPKISWDVADAR 99 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +R G++Q +L+G +S +E G + P KI + W+ Sbjct: 11 ERLKQLRSASGLTQEGLAELIGCSAGNISKWETGSSYPTAPSFHKICEFFGVSESWLL 68 >gi|187730851|ref|YP_001879887.1| helix-turn-helix domain-containing protein [Shigella boydii CDC 3083-94] gi|187427843|gb|ACD07117.1| helix-turn-helix domain protein [Shigella boydii CDC 3083-94] Length = 109 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 1/106 (0%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++ R+A T E+A + E + +E+G +I + L N Sbjct: 3 LQNKNSAINNRLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANILG 62 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQ 129 W+ GEV ++ D L + K Q Sbjct: 63 CDPMWLLTGEVTPPEQPKSEEQQHHDASQQVCPLSREALLRKNQYQ 108 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI RL++ R+ G++ E +LL + + +E G P I + + W+ Sbjct: 9 AINNRLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANILGCDPMWL 68 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 G EV P+ K + Sbjct: 69 LTG-EVTPPEQPKSEEQQH 86 >gi|242242403|ref|ZP_04796848.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|242234110|gb|EES36422.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|319401579|gb|EFV89789.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] Length = 179 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +++++R+ N TQ+E+A + + ++ E+ S S+ L L S Sbjct: 2 DIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + D Y G L + Sbjct: 62 FKESSDEKVLYKKNEQTIYDEYDKGYILNWL 92 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R+ K ++Q E + + +S E P ++ + +V Sbjct: 1 MDIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + E K + + + K Sbjct: 61 FF--KESSDEKVLYKKNEQTIYDEYDKGY 87 >gi|229111169|ref|ZP_04240726.1| Immunity repressor protein [Bacillus cereus Rock1-15] gi|228672333|gb|EEL27620.1| Immunity repressor protein [Bacillus cereus Rock1-15] Length = 142 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V IK RK TQK +A AN S + E+G + S+ + + +I + + Sbjct: 2 NVSINIKKYRKEKKMTQKALAEKANISRSYLGDLESGRYNPSLDTLRTIASALDIDIN-L 60 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 E + +++T+K D +K Sbjct: 61 LLTEDGATQTDNLTSKDDKDIAKRMEEIKR 90 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K RK+K M+Q + + S L + E GR P + R I ++ + D Sbjct: 6 NIKKYRKEKKMTQKALAEKANISRSYLGDLESGRYNPSLDTLRTIASALDIDINLLLTED 65 Query: 177 EVIVPKSIKRAKGNQSSKKSKKDKKS 202 ++ +K+ ++ K+ Sbjct: 66 GATQTDNLTSKDDKDIAKRMEEIKRD 91 >gi|168186644|ref|ZP_02621279.1| helix-turn-helix domain protein [Clostridium botulinum C str. Eklund] gi|169295453|gb|EDS77586.1| helix-turn-helix domain protein [Clostridium botulinum C str. Eklund] Length = 210 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK +R N TQ E+A A A+ +E G +I L + ++ + + Sbjct: 2 NLGERIKMLRLEKNLTQSELAKIAGISRVAIGNYERGTRIPNIDILLNISKALGVTINNL 61 Query: 91 YD 92 + Sbjct: 62 LE 63 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+K +R +K ++Q E K+ G+ + NYE+G IP I I + ++ Sbjct: 1 MNLGERIKMLRLEKNLTQSELAKIAGISRVAIGNYERGTRIPNIDILLNISKALGVTINN 60 Query: 172 IYFGD 176 + D Sbjct: 61 LLEFD 65 >gi|319938878|ref|ZP_08013242.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811928|gb|EFW08194.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 158 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGDNIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVS 56 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 1 MIGDNIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLTP 69 >gi|296532393|ref|ZP_06895122.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296267280|gb|EFH13176.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 144 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 2/114 (1%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 T RQ + VG RI++ R +Q+++A + +E G+ S + Sbjct: 20 TQRARQADRHVGMRIRERRLMLGLSQQQLASMIGVTYQQAHKYERGLNRISAGRLFEIAT 79 Query: 82 EYEISFDWIYDG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + W ++G E + V + L+ A + + R + +SQ+ Sbjct: 80 VLAVPVSWFFEGLDEDGSTQPLGVRQRMCLELARNFALIDNERHQEALSQMARA 133 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R G+SQ + ++G+ YE+G +I V + W + G Sbjct: 32 MRIRERRLMLGLSQQQLASMIGVTYQQAHKYERGLNRISAGRLFEIATVLAVPVSWFFEG 91 >gi|294500289|ref|YP_003563989.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294350226|gb|ADE70555.1| DNA-binding protein [Bacillus megaterium QM B1551] Length = 66 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK++RK+ +Q E+A +N EN S+ A L E + D ++ Sbjct: 4 NRIKELRKSKRMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAAELGATVDELF 61 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+K +RK K MSQ E K+ G+ T++ E + P + A ++ +D + Sbjct: 1 MVENRIKELRKSKRMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAAELGATVDEL 60 Query: 173 YFG 175 + Sbjct: 61 FLF 63 >gi|302537531|ref|ZP_07289873.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] gi|302446426|gb|EFL18242.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] Length = 509 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|254284054|ref|ZP_04959022.1| transcriptional regulator, XRE family [gamma proteobacterium NOR51-B] gi|219680257|gb|EED36606.1| transcriptional regulator, XRE family [gamma proteobacterium NOR51-B] Length = 219 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 ++ + + +G I+D+RKA T E++ + + ++ E G+ SI+ + Sbjct: 28 ANKLAKTDRSLGLDIRDLRKARGMTLSELSKISELSQGYLSQVERGISVPSIKALHSISR 87 Query: 82 EYEISFDWIYDGEVIDRRYEDVTN 105 ++ W + +V Sbjct: 88 ALGVTISWFFQNQVTGEDPAMRAW 111 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 4/79 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY---- 173 ++ +RK +GM+ E K+ + LS E+G ++P IK I + + W + Sbjct: 42 IRDLRKARGMTLSELSKISELSQGYLSQVERGISVPSIKALHSISRALGVTISWFFQNQV 101 Query: 174 FGDEVIVPKSIKRAKGNQS 192 G++ + + R+ + Sbjct: 102 TGEDPAMRAWVVRSGNRRK 120 >gi|197284169|ref|YP_002150041.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227357957|ref|ZP_03842299.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194681656|emb|CAR40714.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227161692|gb|EEI46724.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 106 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ RK T ++A + + +E G+ + Y + L W + Sbjct: 15 VGKRIQKRRKELGYTGSQLAAKLGVSQQQFSRYERGLNKIDLTYLVLLAKFLNTPIYWFF 74 Query: 92 DG 93 + Sbjct: 75 ED 76 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK+ G + + LG+ S YE+G ++ + + + W + Sbjct: 17 KRIQKRRKELGYTGSQLAAKLGVSQQQFSRYERGLNKIDLTYLVLLAKFLNTPIYWFF-- 74 Query: 176 DEVIVPKSIKRAK 188 ++ I S+K K Sbjct: 75 EDCITSTSVKSGK 87 >gi|254386053|ref|ZP_05001368.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] gi|194344913|gb|EDX25879.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] Length = 509 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|153939491|ref|YP_001392322.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|168181734|ref|ZP_02616398.1| DNA-binding protein [Clostridium botulinum Bf] gi|170757018|ref|YP_001782679.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|226950473|ref|YP_002805564.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|237796500|ref|YP_002864052.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|152935387|gb|ABS40885.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|169122230|gb|ACA46066.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|182675110|gb|EDT87071.1| DNA-binding protein [Clostridium botulinum Bf] gi|226841145|gb|ACO83811.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|229263475|gb|ACQ54508.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|295320315|gb|ADG00693.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 136 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 16/122 (13%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ R+K R + Q E+A N + V+ +ENG L + + S D Sbjct: 1 MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD 60 Query: 89 WIY---------------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 +I DG + + + + +K + +++ + Sbjct: 61 YILGRSENRNGIISKANIDGSNYEFELDKSIFPNGITREQMINYIKEL-EERNKELEKEA 119 Query: 134 KL 135 ++ Sbjct: 120 EI 121 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RLK R K ++Q E K L + T+SN+E G IP+ K+ +D Sbjct: 1 MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 +I G I +A + S+ + + DK Sbjct: 61 YIL-GRSENRNGIISKANIDGSNYEFELDK 89 >gi|56965325|ref|YP_177057.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911569|dbj|BAD66096.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 112 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ R++++RKA+ TQ+E+A ESA +E G SI L +Y +S Sbjct: 1 MAELNDRLRELRKAHQLTQQEVASFLGITESAYGFYEQGRNEPSIAKLKQLAEKYNVSIA 60 Query: 89 WI 90 +I Sbjct: 61 YI 62 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL+ +RK ++Q E LG+ S YEQGR P I +++ + + Sbjct: 1 MAELNDRLRELRKAHQLTQQEVASFLGITESAYGFYEQGRNEPSIAKLKQLAEKYNVSIA 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSS 193 +I G+ I + K N S+ Sbjct: 61 YI-AGETDIKTAPSDKVKENGSA 82 >gi|332365442|gb|EGJ43203.1| transcription regulator [Streptococcus sanguinis SK355] Length = 136 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|331702631|ref|YP_004399590.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129974|gb|AEB74527.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 64 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 28/62 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +K+ R+ N +Q+ +A A++ +E+ + I + L ++ + + Sbjct: 3 NLGNNLKEFRQYNELSQEIIACRLGVSRQAISQWEHNLTYPDIENLVRLTQIFDCDINEL 62 Query: 91 YD 92 Sbjct: 63 LF 64 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G LK R+ +SQ LG+ +S +E T P+I+ ++ Q+ ++ Sbjct: 1 MINLGNNLKEFRQYNELSQEIIACRLGVSRQAISQWEHNLTYPDIENLVRLTQIFDCDIN 60 Query: 171 WIYF 174 + F Sbjct: 61 ELLF 64 >gi|237794998|ref|YP_002862550.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657] gi|229264088|gb|ACQ55121.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657] Length = 141 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R+ TQ E+A N +S + + E + + L + + +S D++ Sbjct: 2 LGDKIKQLRENKKLTQHELANKLNIAQSTIGMIEGNKRPAGRKTLIKLADFFGVSVDFLL 61 Query: 92 DGEVIDRRYEDVTNKKR 108 + +K Sbjct: 62 SEDTASEEEIIKLTQKD 78 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +R++K ++Q E L + ST+ E + K K+ +D++ D Sbjct: 6 IKQLRENKKLTQHELANKLNIAQSTIGMIEGNKRPAGRKTLIKLADFFGVSVDFLLSEDT 65 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 + IK + ++ K ++ Sbjct: 66 ASEEEIIKLTQKDEKDIKKALNE 88 >gi|170736981|ref|YP_001778241.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819169|gb|ACA93751.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 180 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L + + ++ Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + G+ S LS E+G ++P I A K+ + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSESR 64 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 65 NRELITVTRA 74 >gi|317470497|ref|ZP_07929885.1| hypothetical protein HMPREF1011_00232 [Anaerostipes sp. 3_2_56FAA] gi|316902012|gb|EFV23938.1| hypothetical protein HMPREF1011_00232 [Anaerostipes sp. 3_2_56FAA] Length = 149 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 3/105 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + + RK +N +Q+++A ++ +E G IR + L Y +S D + Sbjct: 2 NLGNSLFNARKKSNLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM---SQIEF 132 + ++ + E + K K + Q E Sbjct: 62 IEFDIELKEIEQAIENTNEEIQQKVDWTKVWAKKYPILTSYQEEV 106 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 39/90 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G L + RK +SQ + LG+ T+S +E G T+P+I+ ++ + + LD Sbjct: 1 MNLGNSLFNARKKSNLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + D + N+ ++ K Sbjct: 61 LIEFDIELKEIEQAIENTNEEIQQKVDWTK 90 >gi|291559127|emb|CBL37927.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 278 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I +R +Q ++A AV+ +ENG + L E+++S + + Sbjct: 30 ILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTVPNTDTLRLLSKEFDVSINMLL 85 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D R+ D+ + + +R ++GMSQ + + + +S +E G T+P Sbjct: 7 FSDCRFIDMIKMTEVTTMETKKIILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTVPN 66 Query: 155 IKPARKIKQVTKKHLDWIY 173 R + + ++ + Sbjct: 67 TDTLRLLSKEFDVSINMLL 85 >gi|302870146|ref|YP_003838783.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315503577|ref|YP_004082464.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302573005|gb|ADL49207.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410196|gb|ADU08313.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 216 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD- 88 DVG I+D+R+ + +++A A ++ E G+ S L + +S Sbjct: 8 PDVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVSTPA 67 Query: 89 -WIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 ++ G + D+ + V +DP A+ Sbjct: 68 MYLRAGLLDDKEGQGVLAAIAVDPELTMAQ 97 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G ++ +R++ +S + + G+ N LS E+G P + +++ + Sbjct: 6 DLPDVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVST 65 >gi|237739911|ref|ZP_04570392.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423519|gb|EEO38566.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 184 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K R + +E+A + S ++ E G S SI + + ++ ++ Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLI 62 Query: 92 DGEVIDRRYED 102 + E D R + Sbjct: 63 EDEEDDIRNIE 73 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R DKGMS E + + S LS EQG+ P I+ +KI + + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 172 IYFGDEV 178 + +E Sbjct: 61 LIEDEED 67 >gi|323339802|ref|ZP_08080071.1| XRE family transcriptional regulator [Lactobacillus ruminis ATCC 25644] gi|323092675|gb|EFZ35278.1| XRE family transcriptional regulator [Lactobacillus ruminis ATCC 25644] Length = 115 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R N T KE+A S V+ +ENG Y + L + Y++S D++ Sbjct: 50 RLKELRLKNLYTIKEIAGVLGCTASLVSRYENGSRMPRADYLVKLADFYDVSVDYLLGLT 109 Query: 95 VIDRRY 100 R+ Sbjct: 110 EDKERH 115 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R + E +LG S +S YE G +P K+ +D++ E Sbjct: 51 LKELRLKNLYTIKEIAGVLGCTASLVSRYENGSRMPRADYLVKLADFYDVSVDYLLGLTE 110 Query: 178 V 178 Sbjct: 111 D 111 >gi|282600408|ref|ZP_05974197.2| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] gi|282565257|gb|EFB70792.1| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] Length = 185 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 32/87 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +R+A N + E++ + ++A++ E+G + I + + Sbjct: 8 KIGQKIRLLRQARNLSLNELSQLSGISKAALSKLESGDSNPRIDTLESIAAALRFPLSDL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + + Y + D Sbjct: 68 FTRQNESYPYFVKAIPQEGDYLEQFKF 94 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +++ +R+ + +S E +L G+ + LS E G + P I I + L Sbjct: 6 NIKIGQKIRLLRQARNLSLNELSQLSGISKAALSKLESGDSNPRIDTLESIAAALRFPLS 65 Query: 171 WIYFGDEVIVPKSIK 185 ++ P +K Sbjct: 66 DLFTRQNESYPYFVK 80 >gi|225019958|ref|ZP_03709150.1| hypothetical protein CLOSTMETH_03917 [Clostridium methylpentosum DSM 5476] gi|224947322|gb|EEG28531.1| hypothetical protein CLOSTMETH_03917 [Clostridium methylpentosum DSM 5476] Length = 126 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 47/96 (48%), Gaps = 6/96 (6%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ ++KD+R + QKE+A N S ++ +ENG + + L N +++S D++ Sbjct: 2 ELDKKLKDLRTYHGLKQKELAKAINVSSSTISGYENGK-NPDYNTLVKLANYFKVSVDYL 60 Query: 91 YDGEVIDRRYEDVT-----NKKRLDPYAIGARLKSI 121 D + Y+++ +K++ + +K + Sbjct: 61 LDNSPVKLSYDELNSEFQLSKRKYSSLKLIEMIKEL 96 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +LK +R G+ Q E K + + +ST+S YE G+ P+ K+ K +D+ Sbjct: 1 MELDKKLKDLRTYHGLKQKELAKAINVSSSTISGYENGK-NPDYNTLVKLANYFKVSVDY 59 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + V + ++ S +K Sbjct: 60 LLDNSPVKLSYDELNSEFQLSKRK 83 >gi|323490759|ref|ZP_08095961.1| DNA-binding protein [Planococcus donghaensis MPA1U2] gi|323395641|gb|EGA88485.1| DNA-binding protein [Planococcus donghaensis MPA1U2] Length = 172 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +RK T KE+A N S ++ E G S ++ + + + + Sbjct: 6 IGVTLKSLRKERKLTLKELAEQTNVSISFLSQVERGKSSVTLESLRKIADALNVDPSLFF 65 Query: 92 DGEVIDRRYED 102 E +E Sbjct: 66 ANETEKTDWES 76 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LKS+RK++ ++ E + + S LS E+G++ ++ RKI ++F +E Sbjct: 10 LKSLRKERKLTLKELAEQTNVSISFLSQVERGKSSVTLESLRKIADALNVDPS-LFFANE 68 Query: 178 VIVPKSIKRAK 188 R + Sbjct: 69 TEKTDWESRLE 79 >gi|323352799|ref|ZP_08087769.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121835|gb|EFX93581.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|325688158|gb|EGD30177.1| transcriptional regulator [Streptococcus sanguinis SK72] gi|325694179|gb|EGD36097.1| transcriptional regulator [Streptococcus sanguinis SK150] gi|327469090|gb|EGF14562.1| transcriptional regulator [Streptococcus sanguinis SK330] gi|328945639|gb|EGG39790.1| transcriptional regulator [Streptococcus sanguinis SK1087] gi|332363393|gb|EGJ41178.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 65 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R ++ TQ ++A + L E G + S+ L + + D ++ E Sbjct: 6 RLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLFWIE 65 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RLK R + M+Q + +G+ T+ E G+ P + I + K LD Sbjct: 1 MAKNLRLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQ 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 LFWIE 65 >gi|226324586|ref|ZP_03800104.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758] gi|225207034|gb|EEG89388.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758] Length = 179 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 38/91 (41%), Gaps = 3/91 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R A N TQ+E+A + + ++ E + S SI + + + + Sbjct: 2 NIGQKVRELRIAKNLTQEELADRSELSKGFISQLERDLTSPSIATLVDILQCLGTNLNEF 61 Query: 91 YDGEVIDRRYEDVTNK---KRLDPYAIGARL 118 + + ++ + K D + Sbjct: 62 FSDDEEEQVVFGDEDYFEKKDTDLKNTIEWI 92 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R K ++Q E + +S E+ T P I I Q +L+ Sbjct: 1 MNIGQKVRELRIAKNLTQEELADRSELSKGFISQLERDLTSPSIATLVDILQCLGTNLNE 60 Query: 172 IYFGDEV 178 + DE Sbjct: 61 FFSDDEE 67 >gi|162448051|ref|YP_001621183.1| XRE family transcriptional regulator [Acholeplasma laidlawii PG-8A] gi|161986158|gb|ABX81807.1| transcriptional regulator, XRE family [Acholeplasma laidlawii PG-8A] Length = 182 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D+G +I+ +R NN TQ+E+A + ++ EN + S SI+ L + Sbjct: 1 MIDIGKKIRALRLGNNLTQEELANRLELTKGYISQLENNLTSPSIQTLFSLLEVLGVETH 60 Query: 89 WIY 91 + Sbjct: 61 EFF 63 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +++++R ++Q E L + +S E T P I+ + +V Sbjct: 1 MIDIGKKIRALRLGNNLTQEELANRLELTKGYISQLENNLTSPSIQTLFSLLEVLGVETH 60 Query: 171 WIYFGDEVIVPKSI 184 + E K + Sbjct: 61 EFFSKPEGEDAKIV 74 >gi|21244773|ref|NP_644355.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21110470|gb|AAM38891.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 66 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R++++R+AN +Q E+ +N E G S+ A + + S + ++ Sbjct: 3 SRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVFLY 62 Query: 94 EV 95 E Sbjct: 63 EE 64 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 37/64 (57%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +R++ +R+ G SQ E G+ LG+ T++ E G+ P + A +I ++ + ++ ++ Sbjct: 1 MNSRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 Query: 174 FGDE 177 +E Sbjct: 61 LYEE 64 >gi|39937189|ref|NP_949465.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39651047|emb|CAE29570.1| possible transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] Length = 116 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+KD R Q E+A A ++V+ FE+G S L + +++ D++ Sbjct: 12 QRLKDARTLRGLNQAELAGKAGLPAASVSHFESGPRKPSFDNLKALASALDVTTDYLLGR 71 Query: 94 EVIDRRYEDVTNKKRLD 110 + + D Sbjct: 72 SDTPEASAETIGRLHRD 88 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK R +G++Q E G+P +++S++E G P + + D++ Sbjct: 10 FQQRLKDARTLRGLNQAELAGKAGLPAASVSHFESGPRKPSFDNLKALASALDVTTDYLL 69 Query: 174 FGDEVIVPKSIKRAKGNQSS-KKSKKDKK 201 + + + ++ K +++D K Sbjct: 70 GRSDTPEASAETIGRLHRDLGKLTEQDLK 98 >gi|332671330|ref|YP_004454338.1| XRE family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340368|gb|AEE46951.1| transcriptional regulator, XRE family [Cellulomonas fimi ATCC 484] Length = 488 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R T +++ + S V++ ENG + + + + + Sbjct: 20 LGRRIRHLRTGRGMTLEDLGRAIGRAPSQVSMLENGHREPRVGVLAAVADALGVPVAELL 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E RR +R + A L Sbjct: 80 RPEPPTRRAALEVELERAQRGPLFASL 106 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G R++ +R +GM+ + G+ +G S +S E G P + + + Sbjct: 16 DTLVLGRRIRHLRTGRGMTLEDLGRAIGRAPSQVSMLENGHREPRVGVLAAVADALGVPV 75 Query: 170 DWIYFGD 176 + + Sbjct: 76 AELLRPE 82 >gi|313123989|ref|YP_004034248.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280552|gb|ADQ61271.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 209 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 7/93 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GTRI+ +RK+ T +E+A + ++ +EN + + + Sbjct: 3 IGTRIRLLRKSKKMTLEELANQLNSRSSSSGFTKGRLSKWENDREEPKLSSLNQVARFFN 62 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + D+ ++ N R+ A Sbjct: 63 VDIDYFFNDSHPSNTLPLSRNTIRVPVIGTIAC 95 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 7/71 (9%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLL-------GMPNSTLSNYEQGRTIPEIKPARKIKQV 164 +IG R++ +RK K M+ E L G LS +E R P++ ++ + Sbjct: 1 MSIGTRIRLLRKSKKMTLEELANQLNSRSSSSGFTKGRLSKWENDREEPKLSSLNQVARF 60 Query: 165 TKKHLDWIYFG 175 +D+ + Sbjct: 61 FNVDIDYFFND 71 >gi|290511290|ref|ZP_06550659.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] gi|289776283|gb|EFD84282.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] Length = 154 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 36/108 (33%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K G R+K++R A +Q+ A S ++ E G + S+ L N + Sbjct: 5 LRKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEP 64 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + ++ + ++ D L S R + + Sbjct: 65 WQLLASDLSEDNDPELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQK 112 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 2/73 (2%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+K +R GMSQ F G S +S E+G + + + + Sbjct: 9 FGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWQLL 68 Query: 174 FGD--EVIVPKSI 184 D E P+ + Sbjct: 69 ASDLSEDNDPELL 81 >gi|239928289|ref|ZP_04685242.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291436618|ref|ZP_06576008.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291339513|gb|EFE66469.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] Length = 509 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGRLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|30020482|ref|NP_832113.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|29896033|gb|AAP09314.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] Length = 186 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M K S Sbjct: 66 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLN---KRANTTES 122 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 S+ ++ I K +V L+ ++ GD V +P ++K N+S + + Sbjct: 123 HYSHEDKEE----IAVIMK-GEVY-VELEGKEYYLEEGDVVRIPPNVKHRFLNKSDESN 175 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ D + Sbjct: 13 YRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFIND-IDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENND 90 >gi|310828836|ref|YP_003961193.1| hypothetical protein ELI_3266 [Eubacterium limosum KIST612] gi|308740570|gb|ADO38230.1| hypothetical protein ELI_3266 [Eubacterium limosum KIST612] Length = 66 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K+ R M+Q + + +G+ T++ E+G P IK I +V K LD +++ + Sbjct: 7 IKAARAALDMTQKDLAEAVGVTRQTMNAIEKGDYNPTIKLCVAICRVLGKTLDELFWEE 65 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK R A + TQK++A +N E G + +I+ + + + D ++ E Sbjct: 6 RIKAARAALDMTQKDLAEAVGVTRQTMNAIEKGDYNPTIKLCVAICRVLGKTLDELFWEE 65 >gi|306843020|ref|ZP_07475647.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] gi|306286812|gb|EFM58353.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] Length = 470 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR + TQ MA S +NL E +++ L L + Y++ D + Sbjct: 9 GPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++ ++Q + LG+ S L+ E+ + ++ K+ V K LD + Sbjct: 12 IRRIRNERSLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 >gi|295101511|emb|CBK99056.1| Predicted acetyltransferase [Faecalibacterium prausnitzii L2-6] Length = 381 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 GT I+ +R+A + TQ E+A A++ +E I L +S + Sbjct: 7 GTAIRQLREAKHLTQAELAEKLAVSAKAISKWETAHGLPDISLLEPLAAALGVSVLELMQ 66 Query: 93 GEVIDRRYED 102 GE + R Sbjct: 67 GEPVVNRNRS 76 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D Y G ++ +R+ K ++Q E + L + +S +E +P+I + Sbjct: 1 MDSYVTGTAIRQLREAKHLTQAELAEKLAVSAKAISKWETAHGLPDISLLEPLAAALGVS 60 Query: 169 LDWIYFGDEVI 179 + + G+ V+ Sbjct: 61 VLELMQGEPVV 71 >gi|260462394|ref|ZP_05810602.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259031888|gb|EEW33156.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 3/94 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTR+K R+ T K +A AN ES ++ ENG S S+ L + W++ Sbjct: 24 LGTRLKLSRQTRGLTLKALATSANCSESLLSKVENGKVSPSLPMLHRLVEVLGTNIGWMF 83 Query: 92 ---DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 DGE LDP G + R Sbjct: 84 EESDGEEGIVFRAGARPLIALDPLRRGEGISLER 117 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK R+ +G++ S LS E G+ P + ++ +V ++ W++ +E Sbjct: 28 LKLSRQTRGLTLKALATSANCSESLLSKVENGKVSPSLPMLHRLVEVLGTNIGWMF--EE 85 Query: 178 VIVPKSIKRAKGNQS 192 + I G + Sbjct: 86 SDGEEGIVFRAGARP 100 >gi|330719168|ref|ZP_08313768.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 134 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 41/87 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L S+RK+ G+SQ E L + T+S +E G P++ + I + ++ + Sbjct: 5 FSKNLLSLRKEAGISQEELASKLFVTRQTISKWELGEVTPDLGKIQLIAEYFNTPVEELL 64 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDK 200 FG E+ S + K NQ ++ DK Sbjct: 65 FGQEINKNTSKTKDKVNQLFEEDDTDK 91 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 28/73 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +RK +Q+E+A ++ +E G + + + + + + G Sbjct: 7 KNLLSLRKEAGISQEELASKLFVTRQTISKWELGEVTPDLGKIQLIAEYFNTPVEELLFG 66 Query: 94 EVIDRRYEDVTNK 106 + I++ +K Sbjct: 67 QEINKNTSKTKDK 79 >gi|326772833|ref|ZP_08232117.1| transcriptional regulator, XRE family [Actinomyces viscosus C505] gi|326637465|gb|EGE38367.1| transcriptional regulator, XRE family [Actinomyces viscosus C505] Length = 74 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 109 LDPYAIG--ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D A+ LK +R + +Q + LG+ T++ E GR P + A I +V Sbjct: 1 MDGLAVPVRNDLKVLRAQRSWTQARLAEELGVSRQTVNALEAGRYDPSLPLAFTIARVFG 60 Query: 167 KHLDWIYFGDEV 178 ++ I+F D+ Sbjct: 61 LTIEEIFFPDDE 72 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + TQ +A VN E G S+ A + + ++ + I+ + Sbjct: 12 LKVLRAQRSWTQARLAEELGVSRQTVNALEAGRYDPSLPLAFTIARVFGLTIEEIFFPDD 71 Query: 96 I 96 Sbjct: 72 E 72 >gi|306844614|ref|ZP_07477201.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] gi|306275058|gb|EFM56821.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] Length = 470 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR + TQ MA S +NL E +++ L L + Y++ D + Sbjct: 9 GPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++ ++Q + LG+ S L+ E+ + ++ K+ V K LD + Sbjct: 12 IRRIRNERSLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSL 66 >gi|300723214|ref|YP_003712514.1| DNA-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297629731|emb|CBJ90337.1| DNA-binding protein [Xenorhabdus nematophila ATCC 19061] Length = 180 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 30/81 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +RK T +A +S ++ E G+ SI AL L +S + ++ + Sbjct: 5 LKILRKKLGLTLDSLAEKTGMTKSYLSKVERGLSKPSIATALKLSIALNVSVEELFSVDN 64 Query: 96 IDRRYEDVTNKKRLDPYAIGA 116 I + + A Sbjct: 65 IRQGSYSLVRSDERQMLAGSE 85 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK +RK G++ + GM S LS E+G + P I A K+ ++ ++ Sbjct: 1 MNIYLKILRKKLGLTLDSLAEKTGMTKSYLSKVERGLSKPSIATALKLSIALNVSVEELF 60 Query: 174 FGDEV 178 D + Sbjct: 61 SVDNI 65 >gi|288905901|ref|YP_003431123.1| transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] gi|288732627|emb|CBI14199.1| putative transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] Length = 117 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K +RK N TQ+E+A N + + L+E G I + + +S +++ Sbjct: 4 KRLKKLRKEANLTQQELAKNLNVSQQIIGLWERGERKPKIEAINNIAKYFNVSTEYL 60 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK +RK+ ++Q E K L + + +E+G P+I+ I + +++ Sbjct: 1 MFPKRLKKLRKEANLTQQELAKNLNVSQQIIGLWERGERKPKIEAINNIAKYFNVSTEYL 60 >gi|229160788|ref|ZP_04288779.1| Transcriptional regulator, MerR [Bacillus cereus R309803] gi|228622636|gb|EEK79471.1| Transcriptional regulator, MerR [Bacillus cereus R309803] Length = 181 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T KE+A A S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKELARMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEETNTDDLIVRSHKRKKM 84 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ E ++ + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKELARMAEITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 + ++ K + Sbjct: 61 TFSFLLEETNTDDLIVRSHKRKK 83 >gi|197103164|ref|YP_002128542.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480440|gb|ACG79967.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 171 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ RKA TQ+ +A + V +E G S + E+ + + Sbjct: 30 VGLRVRLRRKALGLTQQSLAEALDLTFQQVQKYERGANRISASTLFRISQVLEVPVSYFF 89 Query: 92 DGEVIDRRYEDVTNKKRLD 110 DG + + D Sbjct: 90 DGLHDPAKVAGERFAQVYD 108 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ RK G++Q + L + + YE+G +I QV + + + + G Sbjct: 34 VRLRRKALGLTQQSLAEALDLTFQQVQKYERGANRISASTLFRISQVLEVPVSYFFDG 91 >gi|87201027|ref|YP_498284.1| putative prophage repressor [Novosphingobium aromaticivorans DSM 12444] gi|87136708|gb|ABD27450.1| putative prophage repressor [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 19/61 (31%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +RK TQ ++A + + +E G L + + Sbjct: 19 ERLAALRKRKGLTQVDLAERMGVEQPTIQRWERGQREPKFEQLFRLAEILGVDASALLSK 78 Query: 94 E 94 + Sbjct: 79 D 79 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 34/66 (51%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 P RL ++RK KG++Q++ + +G+ T+ +E+G+ P+ + ++ ++ Sbjct: 14 PMGYLERLAALRKRKGLTQVDLAERMGVEQPTIQRWERGQREPKFEQLFRLAEILGVDAS 73 Query: 171 WIYFGD 176 + D Sbjct: 74 ALLSKD 79 >gi|119387120|ref|YP_918175.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377715|gb|ABL72479.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 213 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R+K++R A N +Q+++A + V++ E G S S+ + ++ Sbjct: 26 DVGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRSSPSVASLRKILGGLGVTMSEF 85 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 ++ ++ T + D Sbjct: 86 FEPDLPQSPQPFFTPAELRD 105 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 36/76 (47%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 R+ + +GARLK +R MSQ + + G+P+ +S E GR+ P + RKI Sbjct: 21 RMSDFDVGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRSSPSVASLRKILGGLGV 80 Query: 168 HLDWIYFGDEVIVPKS 183 + + D P+ Sbjct: 81 TMSEFFEPDLPQSPQP 96 >gi|302555572|ref|ZP_07307914.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302473190|gb|EFL36283.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 212 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R + + +A S V+ E G S+ + IS + ++ Sbjct: 9 VGARIRQARLERGTSLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVESLF 68 Query: 92 D 92 D Sbjct: 69 D 69 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 AR++ R ++G S + +G+ S +S E G++ P + I ++ ++ Sbjct: 11 ARIRQARLERGTSLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVESLF 68 >gi|261363946|ref|ZP_05976829.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria mucosa ATCC 25996] gi|296314023|ref|ZP_06863964.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria polysaccharea ATCC 43768] gi|288567969|gb|EFC89529.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria mucosa ATCC 25996] gi|296839393|gb|EFH23331.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria polysaccharea ATCC 43768] Length = 120 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G R+K IR N ++++++ +++ +ENG S + Y + + I+ W Sbjct: 10 KLLGERLKKIRTDNGYSREQLSELFGISRASIQNYENGERSPNADYLVQFYKHFGINLHW 69 Query: 90 IYDGEVIDRRYE 101 + G + + Sbjct: 70 LLTGNKAAKFQD 81 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 36/75 (48%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + N L +G RLK IR D G S+ + +L G+ +++ NYE G P + Sbjct: 1 MDNSFELSSKLLGERLKKIRTDNGYSREQLSELFGISRASIQNYENGERSPNADYLVQFY 60 Query: 163 QVTKKHLDWIYFGDE 177 + +L W+ G++ Sbjct: 61 KHFGINLHWLLTGNK 75 >gi|167755401|ref|ZP_02427528.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|237733631|ref|ZP_04564112.1| SOS-response transcriptional repressor [Mollicutes bacterium D7] gi|167704340|gb|EDS18919.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|229383229|gb|EEO33320.1| SOS-response transcriptional repressor [Coprobacillus sp. D7] Length = 206 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWIY 91 G RIK +RK TQ+++ +SA+ +EN + L +++ + Sbjct: 3 GERIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKDTIQKLSEIFDVPASYFL 62 Query: 92 DGEVIDRRYEDVT 104 + ++ + Sbjct: 63 GIDESNQPIITDS 75 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDW 171 G R+K +RK+KG++Q + G LLG+ S ++ YE R + +K+ ++ + Sbjct: 1 MTGERIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKDTIQKLSEIFDVPASY 60 Query: 172 IYFGDEVIVP 181 DE P Sbjct: 61 FLGIDESNQP 70 >gi|160934259|ref|ZP_02081646.1| hypothetical protein CLOLEP_03130 [Clostridium leptum DSM 753] gi|156866932|gb|EDO60304.1| hypothetical protein CLOLEP_03130 [Clostridium leptum DSM 753] Length = 162 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + +R+ + +Q+E+A AV +E+G + + L Y +S D + Sbjct: 11 ISRNLTVLRQIHKYSQEEVAEKIGVSRQAVAKWESGETAPDLINCDALAELYNVSVDDLI 70 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + E K + Sbjct: 71 HFDQSKEKIEIPPKGKHI 88 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 32/80 (40%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + + I L +R+ SQ E + +G+ ++ +E G T P++ + ++ Sbjct: 2 KYMKNRNFCISRNLTVLRQIHKYSQEEVAEKIGVSRQAVAKWESGETAPDLINCDALAEL 61 Query: 165 TKKHLDWIYFGDEVIVPKSI 184 +D + D+ I Sbjct: 62 YNVSVDDLIHFDQSKEKIEI 81 >gi|311030669|ref|ZP_07708759.1| YazB [Bacillus sp. m3-13] Length = 71 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + +Q ++ + E G S SI +L L ++ D ++ Sbjct: 4 NRVKELRARHGFSQSDLGSLVGVTRQTIGFIEKGEFSPSIALSLRLAKHLKVKVDELFWL 63 Query: 94 EVIDRRYE 101 E D E Sbjct: 64 EGEDEENE 71 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +R G SQ + G L+G+ T+ E+G P I + ++ + K +D +++ Sbjct: 4 NRVKELRARHGFSQSDLGSLVGVTRQTIGFIEKGEFSPSIALSLRLAKHLKVKVDELFWL 63 Query: 176 DEVIVPKS 183 + Sbjct: 64 EGEDEENE 71 >gi|302557707|ref|ZP_07310049.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] gi|302475325|gb|EFL38418.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] Length = 509 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE- 84 Y +G I+D R+ TQ ++A N +SAVN E G + S+ + + Sbjct: 3 DDYLVRIGKLIRDARQHRGWTQTQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDS 62 Query: 85 --ISFDW 89 +S + Sbjct: 63 EIVSLGY 69 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + L S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQTQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|170781903|ref|YP_001710235.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169156471|emb|CAQ01619.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 487 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 28/160 (17%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK T + + A L S +++ ENG T + + ++ + Sbjct: 18 IGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALDVDVTHLL 77 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL-----------------------KSI--RKDKG 126 + D R R ++ L + + R + Sbjct: 78 AADAPDARSALEIELDRAQRSSLYGSLGLPAVPASRALPQETLEALVGLHRELARRARES 137 Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA--RKIKQV 164 ++ E + + E+ IPEI+ R + V Sbjct: 138 IATPEEARRANTEQRLMMR-ERDNHIPEIEELAERMLADV 176 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG R++ RK G++ G+ G+ S LS E GR + +I Sbjct: 13 MDQLVIGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALDVD 72 Query: 169 LDWIYFGD--EVIVPKSIKRAKGNQSS 193 + + D + I+ + +SS Sbjct: 73 VTHLLAADAPDARSALEIELDRAQRSS 99 >gi|313903103|ref|ZP_07836497.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] gi|313466605|gb|EFR62125.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] Length = 218 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 4/111 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ IR++ N + E+ S ++ +E S+ L YE+ Sbjct: 3 DLGGRLRRIRESRNLSIYEVERRTGMHFSTISKYERNERQPSLDVLRELAALYEVPVSVF 62 Query: 91 YDG----EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 E + + + LD A+ + + + L Sbjct: 63 LTDRLALETLLPQPLAGLALQLLDRPALAEACQRLAALDDQQVEAVAEFLD 113 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ IR+ + +S E + GM ST+S YE+ P + R++ + + + Sbjct: 8 LRRIRESRNLSIYEVERRTGMHFSTISKYERNERQPSLDVLRELAALYEVPVSVFLTD 65 >gi|300172874|ref|YP_003772039.1| PbsX transcriptional repressor [Leuconostoc gasicomitatum LMG 18811] gi|299887252|emb|CBL91220.1| transcriptional repressor of pbsx genes,putative [Leuconostoc gasicomitatum LMG 18811] Length = 154 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +RK TQK++A N + V E S + N +++ +++ Sbjct: 6 QRIKQLRKIYGLTQKDLADKINSSRTNVARIETDKVHPSYPMLSTIANAFDVPIEYL--- 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + I D ++ L Y G +L Sbjct: 63 QGIVNADIDNNHENVLYFYDDGEQL 87 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 23/62 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 R+K +RK G++Q + + + ++ E + P I ++ Sbjct: 1 MSITAQRIKQLRKIYGLTQKDLADKINSSRTNVARIETDKVHPSYPMLSTIANAFDVPIE 60 Query: 171 WI 172 ++ Sbjct: 61 YL 62 >gi|291537327|emb|CBL10439.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 138 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 7/129 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK RK + TQ E+ ++ E G + L + S DWI Sbjct: 8 IGKRIKKRRKELHLTQTEIKEKTGISSGNMSDIERGNRLPAATTLAQLSEILDCSIDWIL 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G+ + D K + +S+ + +LL + + ++ + Sbjct: 68 TGKSPVSENLISPDIGEKDQ-------KLLSLFHEISEEDQEELLMIAQLKYNRTQKSKE 120 Query: 152 IPEIKPARK 160 + Sbjct: 121 AETTSSLSR 129 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 41/88 (46%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD +IG R+K RK+ ++Q E + G+ + +S+ E+G +P ++ ++ Sbjct: 1 MELDIQSIGKRIKKRRKELHLTQTEIKEKTGISSGNMSDIERGNRLPAATTLAQLSEILD 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSK 194 +DWI G + I G + K Sbjct: 61 CSIDWILTGKSPVSENLISPDIGEKDQK 88 >gi|291531986|emb|CBK97571.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 110 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R++D+R+ +KTQ+E+A +E+G + A+ L Y +S D+I Sbjct: 5 QRLRDLREDADKTQQEIADYLGTSAQHYGKYESGKAEIPLERAVLLAKYYNVSLDYI 61 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RL+ +R+D +Q E LG YE G+ ++ A + + LD+ Sbjct: 1 MAHYQRLRDLREDADKTQQEIADYLGTSAQHYGKYESGKAEIPLERAVLLAKYYNVSLDY 60 Query: 172 I---------YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 I D + P I K + S+ K+ K + Sbjct: 61 IAGISSSRHPLTSDSSLSPIGILSDKITRLSESEKQAVKDT 101 >gi|260463544|ref|ZP_05811743.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259030635|gb|EEW31912.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 482 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR A TQ MA G S +NL E +++ L L + Y++ + Sbjct: 9 GPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILKLASVYKVDPHEL 66 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR KG++Q + LG+ S L+ E+ + ++ K+ V K + Sbjct: 12 IRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILKLASVYKVDPHEL 66 >gi|225378006|ref|ZP_03755227.1| hypothetical protein ROSEINA2194_03666 [Roseburia inulinivorans DSM 16841] gi|225210159|gb|EEG92513.1| hypothetical protein ROSEINA2194_03666 [Roseburia inulinivorans DSM 16841] Length = 120 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 35/93 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R +Q E+A ++ + E G C S L + ++S D++ Sbjct: 13 VGDRIRKKRVQLGFSQDEVAERIDRAPKYCSDIERGTCGMSTETMLAISECLDMSLDYMM 72 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 GE D N + + + K R Sbjct: 73 FGEQTDEEARRQENDELAVIHILSGCSKQQRDY 105 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 ++ D A+G R++ R G SQ E + + S+ E+G + I Sbjct: 1 MNRKREAYDRLAVGDRIRKKRVQLGFSQDEVAERIDRAPKYCSDIERGTCGMSTETMLAI 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKR 186 + LD++ FG++ + Sbjct: 61 SECLDMSLDYMMFGEQTDEEARRQE 85 >gi|254440509|ref|ZP_05054003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] gi|198255955|gb|EDY80269.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] Length = 822 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G R+K R + TQKE+A AN + ++ E S L ++ W Sbjct: 568 ETFGDRLKKKRSEMSLTQKELADAANISQPFLSRIEKKSSEASSDNVRALATALGVTAGW 627 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + G + R E V ++ D + L Sbjct: 628 LQYGSDTEVRSETVEDENAGDVIYMTEPL 656 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 1/81 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-D 176 LK R + ++Q E + LS E+ + R + W+ +G D Sbjct: 574 LKKKRSEMSLTQKELADAANISQPFLSRIEKKSSEASSDNVRALATALGVTAGWLQYGSD 633 Query: 177 EVIVPKSIKRAKGNQSSKKSK 197 + ++++ ++ Sbjct: 634 TEVRSETVEDENAGDVIYMTE 654 >gi|13475454|ref|NP_107018.1| hypothetical protein mlr6529 [Mesorhizobium loti MAFF303099] gi|14026206|dbj|BAB52804.1| mlr6529 [Mesorhizobium loti MAFF303099] Length = 514 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR A TQ MA G S +NL E +++ L L + Y++ + Sbjct: 41 GPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILKLASVYKVDPHEL 98 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR KG++Q + LG+ S L+ E+ + ++ K+ V K + Sbjct: 44 IRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILKLASVYKVDPHEL 98 >gi|296393448|ref|YP_003658332.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180595|gb|ADG97501.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 148 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 38/134 (28%), Gaps = 18/134 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 + IR N ++A A + +ENG + I + + + + + Sbjct: 14 LASIRVKNGLEIVDLARLAQVPAQTIRDWENGKTTPQIDTLVKIASVLKRPISSLVSVPK 73 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 +L +R G++Q + K LG+ S+ E+ Sbjct: 74 ------------------TQRKLSDLRILAGLTQPQLAKTLGISTSSYGELERAMRPIPE 115 Query: 156 KPARKIKQVTKKHL 169 + Sbjct: 116 HLLGPLSSTLGVSP 129 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L SIR G+ ++ +L +P T+ ++E G+T P+I KI V K+ + + Sbjct: 14 LASIRVKNGLEIVDLARLAQVPAQTIRDWENGKTTPQIDTLVKIASVLKRPISSLV 69 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 18/53 (33%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ D+R TQ ++A S+ E M L + +S Sbjct: 76 RKLSDLRILAGLTQPQLAKTLGISTSSYGELERAMRPIPEHLLGPLSSTLGVS 128 >gi|295104999|emb|CBL02543.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 100 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 35/78 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ +IRK + TQK +A AV+ +E G S L + Y S D++ Sbjct: 2 LGERLAEIRKNYHDTQKSLADKLGLTVWAVSAWEQGRNSPPSDVLLAICKLYGTSADYLL 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 ID E ++RL Sbjct: 62 GLTDIDPSDEARKQRQRL 79 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 36/86 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RL IRK+ +Q LG+ +S +EQGR P I ++ D++ Sbjct: 1 MLGERLAEIRKNYHDTQKSLADKLGLTVWAVSAWEQGRNSPPSDVLLAICKLYGTSADYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ ++ + + ++ + Sbjct: 61 LGLTDIDPSDEARKQRQRLTEEEQNE 86 >gi|326204926|ref|ZP_08194779.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984975|gb|EGD45818.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 110 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K +RK +Q+ +A + ++L+E G+ + +I L + + +S D++ D Sbjct: 5 DNLKKLRKQYKYSQEYLAEKLKTTQQNISLYERGLVAPNIETLTQLADCFRVSVDYLIDY 64 Query: 94 EVIDRRYEDVTNKKRL 109 + L Sbjct: 65 KKDPNHTGLSQEAIDL 80 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK +RK SQ + L +S YE+G P I+ ++ + +D+ Sbjct: 1 MSFSDNLKKLRKQYKYSQEYLAEKLKTTQQNISLYERGLVAPNIETLTQLADCFRVSVDY 60 Query: 172 IY 173 + Sbjct: 61 LI 62 >gi|239626609|ref|ZP_04669640.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516755|gb|EEQ56621.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 86 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R+++G++Q + G+++G ++ E + P I A I QV ++ ++ Sbjct: 1 MKNRIKELREERGLTQEQLGQMVGTSRQAINAIETEKFEPSIWLAYDISQVFNCSIEEVF 60 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ S ++ + + S + + DKK Sbjct: 61 LFED-----STRKTRADSSRRDNNGDKKHP 85 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++R+ TQ+++ A+N E SI A + + S + ++ Sbjct: 3 NRIKELREERGLTQEQLGQMVGTSRQAINAIETEKFEPSIWLAYDISQVFNCSIEEVFLF 62 Query: 94 EVIDRRYEDVTNKKR 108 E R+ ++++ Sbjct: 63 EDSTRKTRADSSRRD 77 >gi|196042539|ref|ZP_03109780.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus NVH0597-99] gi|229187856|ref|ZP_04314975.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus BGSC 6E1] gi|196026696|gb|EDX65362.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus NVH0597-99] gi|228595619|gb|EEK53320.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus BGSC 6E1] Length = 113 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +R TQ ++A N + + EN S+ + + + +S D++ Sbjct: 3 FGEKLKQLRGKR--TQGDVANLLNISRATYSHLENNRIEPSMTVLNSIADLFCVSTDYLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G D R + NK + L Sbjct: 61 -GRSSDPRLTEEENKIADEMARRFMEL 86 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + +Q + LL + +T S+ E R P + I + D+ Sbjct: 1 MTFGEKLKQLRGKR--TQGDVANLLNISRATYSHLENNRIEPSMTVLNSIADLFCVSTDY 58 Query: 172 IY 173 + Sbjct: 59 LL 60 >gi|86131733|ref|ZP_01050330.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134] gi|85817555|gb|EAQ38729.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134] Length = 251 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 26/85 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I+ IR +Q+ A + + +E G I + + N + I D + Sbjct: 4 FGKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTVIKIANYFSIPIDDLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 E+ D I Sbjct: 64 TKELTVNSLLKFKADLTTDHEQITK 88 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ IR K +SQ F +L + TL YE+GR+ P+I KI +D Sbjct: 1 MSFFGKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTVIKIANYFSIPID 60 Query: 171 WIYFGD 176 + + Sbjct: 61 DLLTKE 66 >gi|315652455|ref|ZP_07905442.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315485293|gb|EFU75688.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 177 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+++K +R TQ+E+A A + ++ EN + S SI L + + Sbjct: 2 DIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENNITSPSIATLLDILQCLGVQIKDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +D E + + + + +K I Sbjct: 62 FDEETETQVVFTEEDYFIKEDKELNNTVKWI 92 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 29/84 (34%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG++LK +R G++Q E + +S E T P I I Q + Sbjct: 1 MDIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENNITSPSIATLLDILQCLGVQIKD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + + + + K+ Sbjct: 61 FFDEETETQVVFTEEDYFIKEDKE 84 >gi|307244718|ref|ZP_07526820.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306491895|gb|EFM63946.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 71 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ R Q+E+ + ++L E G + SI L L ++++ + I+ Sbjct: 5 NKLKEYRAQKGINQQELGKLVDVSRQTISLIERGDYNPSITLCLKLAKLFDVNVEDIFIY 64 Query: 94 EVIDRRY 100 E + Sbjct: 65 EEDEEND 71 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +LK R KG++Q E GKL+ + T+S E+G P I K+ ++ +++ Sbjct: 1 MPLLNKLKEYRAQKGINQQELGKLVDVSRQTISLIERGDYNPSITLCLKLAKLFDVNVED 60 Query: 172 IYFGDEVIV 180 I+ +E Sbjct: 61 IFIYEEDEE 69 >gi|262376108|ref|ZP_06069339.1| predicted protein [Acinetobacter lwoffii SH145] gi|262309202|gb|EEY90334.1| predicted protein [Acinetobacter lwoffii SH145] Length = 107 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+IRK TQ+E+A + ++++ E G S+ L +S D++ Sbjct: 12 ARLKEIRKQRKLTQQELAEKSGIPSTSISHIEAGSRKPSLENFYKLVIVLNVSADYLLGR 71 Query: 94 EVIDRRYEDVTNKKRL 109 + K + Sbjct: 72 TERSSDVGNDPIAKSI 87 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D ARLK IRK + ++Q E + G+P++++S+ E G P ++ K+ V Sbjct: 4 EMDSELFCARLKEIRKQRKLTQQELAEKSGIPSTSISHIEAGSRKPSLENFYKLVIVLNV 63 Query: 168 HLDWIYFGDE 177 D++ E Sbjct: 64 SADYLLGRTE 73 >gi|225019955|ref|ZP_03709147.1| hypothetical protein CLOSTMETH_03914 [Clostridium methylpentosum DSM 5476] gi|224947319|gb|EEG28528.1| hypothetical protein CLOSTMETH_03914 [Clostridium methylpentosum DSM 5476] Length = 127 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 33/72 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +++++R Q E+A N ++S + +E+ + L N Y +S D++ Sbjct: 2 EIAKKLQELRIEKGLKQTEVAEAINIVQSTLANYESNATLPDYPILIKLANFYNVSIDYL 61 Query: 91 YDGEVIDRRYED 102 D ++D Sbjct: 62 LDNSPTKLSWQD 73 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +L+ +R +KG+ Q E + + + STL+NYE T+P+ K+ +D+ Sbjct: 1 MEIAKKLQELRIEKGLKQTEVAEAINIVQSTLANYESNATLPDYPILIKLANFYNVSIDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|16078945|ref|NP_389766.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221309780|ref|ZP_03591627.1| hypothetical protein Bsubs1_10396 [Bacillus subtilis subsp. subtilis str. 168] gi|221314102|ref|ZP_03595907.1| hypothetical protein BsubsN3_10327 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319024|ref|ZP_03600318.1| hypothetical protein BsubsJ_10243 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323298|ref|ZP_03604592.1| hypothetical protein BsubsS_10362 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342368|sp|O34647|YOBD_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yobD gi|2619003|gb|AAB84427.1| transcription regulator [Bacillus subtilis] gi|2634278|emb|CAB13777.1| transcriptional regulator (phage-related, Xre family) [Bacillus subtilis subsp. subtilis str. 168] Length = 112 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 31/84 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +RKA+ T +++A +S+ +E + + L Y++S D+I Sbjct: 4 QRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYILGL 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR 117 + N K Sbjct: 64 TDDPDPKVERKNLKEFLEKPDIHW 87 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +RK ++ + + +G+ S+ YE P + + ++ +D+I Sbjct: 4 QRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYILGL 63 Query: 176 DEVIVPKSIKR 186 + PK ++ Sbjct: 64 TDDPDPKVERK 74 >gi|30261384|ref|NP_843761.1| transcriptional regulator SinR [Bacillus anthracis str. Ames] gi|47526558|ref|YP_017907.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'] gi|49184213|ref|YP_027465.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne] gi|49479785|ref|YP_035509.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144053|ref|YP_082775.1| transcriptional regulator [Bacillus cereus E33L] gi|65318649|ref|ZP_00391608.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165870458|ref|ZP_02215113.1| transcriptional regulator SinR [Bacillus anthracis str. A0488] gi|167634445|ref|ZP_02392766.1| transcriptional regulator SinR [Bacillus anthracis str. A0442] gi|167639233|ref|ZP_02397505.1| transcriptional regulator SinR [Bacillus anthracis str. A0193] gi|170686721|ref|ZP_02877941.1| transcriptional regulator SinR [Bacillus anthracis str. A0465] gi|170706389|ref|ZP_02896850.1| transcriptional regulator SinR [Bacillus anthracis str. A0389] gi|177651426|ref|ZP_02934215.1| transcriptional regulator SinR [Bacillus anthracis str. A0174] gi|190568774|ref|ZP_03021678.1| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I] gi|196040706|ref|ZP_03108005.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99] gi|196046437|ref|ZP_03113662.1| transcriptional regulator SinR [Bacillus cereus 03BB108] gi|218902488|ref|YP_002450322.1| transcriptional regulator SinR [Bacillus cereus AH820] gi|225863243|ref|YP_002748621.1| transcriptional regulator SinR [Bacillus cereus 03BB102] gi|227815879|ref|YP_002815888.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684] gi|228913951|ref|ZP_04077575.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926412|ref|ZP_04089484.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932662|ref|ZP_04095536.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944980|ref|ZP_04107341.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090334|ref|ZP_04221578.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42] gi|229120921|ref|ZP_04250163.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201] gi|229183574|ref|ZP_04310798.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1] gi|229600133|ref|YP_002865801.1| transcriptional regulator SinR [Bacillus anthracis str. A0248] gi|254682559|ref|ZP_05146420.1| transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254726220|ref|ZP_05188002.1| transcriptional regulator [Bacillus anthracis str. A1055] gi|254733977|ref|ZP_05191691.1| transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254740336|ref|ZP_05198027.1| transcriptional regulator [Bacillus anthracis str. Kruger B] gi|254753723|ref|ZP_05205758.1| transcriptional regulator [Bacillus anthracis str. Vollum] gi|254758819|ref|ZP_05210846.1| transcriptional regulator [Bacillus anthracis str. Australia 94] gi|30255238|gb|AAP25247.1| transcriptional regulator SinR [Bacillus anthracis str. Ames] gi|47501706|gb|AAT30382.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'] gi|49178140|gb|AAT53516.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne] gi|49331341|gb|AAT61987.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977522|gb|AAU19072.1| transcriptional regulator [Bacillus cereus E33L] gi|164713953|gb|EDR19475.1| transcriptional regulator SinR [Bacillus anthracis str. A0488] gi|167512672|gb|EDR88046.1| transcriptional regulator SinR [Bacillus anthracis str. A0193] gi|167530333|gb|EDR93059.1| transcriptional regulator SinR [Bacillus anthracis str. A0442] gi|170128923|gb|EDS97789.1| transcriptional regulator SinR [Bacillus anthracis str. A0389] gi|170669244|gb|EDT19987.1| transcriptional regulator SinR [Bacillus anthracis str. A0465] gi|172082704|gb|EDT67767.1| transcriptional regulator SinR [Bacillus anthracis str. A0174] gi|190560190|gb|EDV14171.1| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I] gi|196022621|gb|EDX61303.1| transcriptional regulator SinR [Bacillus cereus 03BB108] gi|196028496|gb|EDX67104.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99] gi|218539564|gb|ACK91962.1| transcriptional regulator SinR [Bacillus cereus AH820] gi|225790845|gb|ACO31062.1| transcriptional regulator SinR [Bacillus cereus 03BB102] gi|227003466|gb|ACP13209.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684] gi|228599984|gb|EEK57580.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1] gi|228662581|gb|EEL18179.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201] gi|228693028|gb|EEL46745.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42] gi|228814649|gb|EEM60909.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826980|gb|EEM72740.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833236|gb|EEM78801.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845673|gb|EEM90700.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264541|gb|ACQ46178.1| transcriptional regulator SinR [Bacillus anthracis str. A0248] Length = 107 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + + Q + Sbjct: 62 LHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQ 106 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|332798069|ref|YP_004459568.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695804|gb|AEE90261.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 37/79 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +RIK RKA T KE+A AN S ++ E G+ + SI + N ++ + Sbjct: 13 SRIKKFRKAKKMTIKELAEKANITSSMLSQIERGLANPSINTMKLIANALDVPLFKFFME 72 Query: 94 EVIDRRYEDVTNKKRLDPY 112 E D R + VT + R Y Sbjct: 73 EEDDIRSQVVTPENRRRVY 91 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 K+ + +R+K RK K M+ E + + +S LS E+G P I + I Sbjct: 2 KKEPYEENTFYSRIKKFRKAKKMTIKELAEKANITSSMLSQIERGLANPSINTMKLIANA 61 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 L + +E + + + + Sbjct: 62 LDVPLFKFFMEEEDDIRSQVVTPENRR 88 >gi|302381785|ref|YP_003817608.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192413|gb|ADK99984.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 67 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N +Q ++A VN E G S+ A + +E + I+ Sbjct: 3 NRLKVLRAERNWSQADLAAALGVSRQTVNALETGRYDPSLPLAFKIARVFEQPIESIFSD 62 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ + LG+ T++ E GR P + A KI +V ++ ++ I+ Sbjct: 1 MNNRLKVLRAERNWSQADLAAALGVSRQTVNALETGRYDPSLPLAFKIARVFEQPIESIF 60 Query: 174 FG 175 Sbjct: 61 SD 62 >gi|255280060|ref|ZP_05344615.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255269151|gb|EET62356.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 74 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ ++ TQ +MA N + + +EN + + + + + +S D++ + Sbjct: 5 KRIRDLREDSDITQTKMAEKLNISQRTYSRYENADSLMPLDILVQIADIHGVSIDYLLER 64 Query: 94 EVID 97 + Sbjct: 65 TDVP 68 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 30/67 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R++ +R+D ++Q + + L + T S YE ++ + +I + +D+ Sbjct: 1 MKRYKRIRDLREDSDITQTKMAEKLNISQRTYSRYENADSLMPLDILVQIADIHGVSIDY 60 Query: 172 IYFGDEV 178 + +V Sbjct: 61 LLERTDV 67 >gi|220930162|ref|YP_002507071.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000490|gb|ACL77091.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 108 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 33/75 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K++G RI+D R++ T++ A + V E G S+ + + + IS D Sbjct: 3 YKEIGKRIRDERESFGLTRERFAEMLELSTNFVGQIERGEKKMSLETLINISDCLHISLD 62 Query: 89 WIYDGEVIDRRYEDV 103 ++ G + + Sbjct: 63 YLIKGTPENNINTNK 77 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG R++ R+ G+++ F ++L + + + E+G ++ I Sbjct: 1 MDYKEIGKRIRDERESFGLTRERFAEMLELSTNFVGQIERGEKKMSLETLINISDCLHIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 LD++ G +I K + K K++ S Sbjct: 61 LDYLIKG---TPENNINTNKLQKLIDKCSKEEIS 91 >gi|154504728|ref|ZP_02041466.1| hypothetical protein RUMGNA_02235 [Ruminococcus gnavus ATCC 29149] gi|153794902|gb|EDN77322.1| hypothetical protein RUMGNA_02235 [Ruminococcus gnavus ATCC 29149] Length = 117 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G R+K+ R + TQ+E++ + S+++ ENG S S++ + + N EI D Sbjct: 9 YTKLGERLKEARIKKHMTQEELSEKIDSATSSISHLENGTHSPSLKTLIKICNVLEIGID 68 Query: 89 WIYDGEVIDRRYEDVTNK 106 + + + Sbjct: 69 ALLCDSLSAISSSYLDKD 86 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K LD +G RLK R K M+Q E + + S++S+ E G P +K KI V Sbjct: 4 KNELDYTKLGERLKEARIKKHMTQEELSEKIDSATSSISHLENGTHSPSLKTLIKICNVL 63 Query: 166 KKHLDWIY 173 + +D + Sbjct: 64 EIGIDALL 71 >gi|107027580|ref|YP_625091.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693708|ref|YP_839241.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896954|gb|ABF80118.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651708|gb|ABK12348.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] Length = 180 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L + + ++ Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + G+ S LS E+G ++P I A K+ + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSESR 64 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 65 NRELITVTRA 74 >gi|229103036|ref|ZP_04233725.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-28] gi|228680451|gb|EEL34639.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-28] Length = 113 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +R TQ ++A N + + EN S+ + + + +S D++ Sbjct: 3 FGEKLKQLRGKR--TQGDVASLLNISRATYSHLENNRIEPSMSLLNSIADLFCVSTDYLL 60 Query: 92 DGEVIDRRYEDVTN 105 R E+ Sbjct: 61 GRSSDPRLTEEEDK 74 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + +Q + LL + +T S+ E R P + I + D+ Sbjct: 1 MTFGEKLKQLRGKR--TQGDVASLLNISRATYSHLENNRIEPSMSLLNSIADLFCVSTDY 58 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + + N+ +++ Sbjct: 59 LLGRSSDPRLTEEEDKTANEMARR 82 >gi|304560689|gb|ADM43352.1| P22 repressor protein c2 [Edwardsiella tarda FL6-60] Length = 216 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G RI RK +Q ++ A++ +E S L L + S ++ Sbjct: 4 ETMGYRIHKRRKELKLSQVSLSKAVGVSNVAISQWERDETSPRGDALLNLAEALQCSAEY 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +G +D E + + Y + + + Sbjct: 64 LVNGGDVDHNIEFRKERTQKGMYPVISWV 92 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 37/83 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G R+ RK+ +SQ+ K +G+ N +S +E+ T P + + + Sbjct: 1 MKSETMGYRIHKRRKELKLSQVSLSKAVGVSNVAISQWERDETSPRGDALLNLAEALQCS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 +++ G +V ++ + + Sbjct: 61 AEYLVNGGDVDHNIEFRKERTQK 83 >gi|302670016|ref|YP_003829976.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394489|gb|ADL33394.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 210 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 4/123 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R + TQ+++A +V+ +E G I L N +E S D + Sbjct: 6 ANLKKYRIQKDLTQEDVAEFLGITAQSVSKWERGESYPDITLLPALANIFETSVDLLLGM 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL----KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + I + K+ + K+ R+ + + G +LG+ ++ E Sbjct: 66 DTIRAEQTRLDIHKKAISFQRSGNYDMAEKTYREALLIYPNKPGMILGLASTLALKGETE 125 Query: 150 RTI 152 I Sbjct: 126 EAI 128 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 35/73 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + A LK R K ++Q + + LG+ ++S +E+G + P+I + + + +D Sbjct: 1 MNYLPANLKKYRIQKDLTQEDVAEFLGITAQSVSKWERGESYPDITLLPALANIFETSVD 60 Query: 171 WIYFGDEVIVPKS 183 + D + ++ Sbjct: 61 LLLGMDTIRAEQT 73 >gi|262198330|ref|YP_003269539.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081677|gb|ACY17646.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 198 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 + F E + ++ LI+ E + +G I+++RK T K+++ N S + Sbjct: 107 TIAEFREAIQRIAKKKGLILRRE-DELHASIGRNIRELRKTRGLTLKQLSRRTNLSVSLL 165 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + E S S+ + ++ ++ Sbjct: 166 SQIERAESSASVSSLFKVATALDVPITELF 195 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IG ++ +RK +G++ + + + S LS E+ + + K+ + Sbjct: 133 HASIGRNIRELRKTRGLTLKQLSRRTNLSVSLLSQIERAESSASVSSLFKVATALDVPIT 192 Query: 171 WIY 173 ++ Sbjct: 193 ELF 195 >gi|169633405|ref|YP_001707141.1| putative repressor protein from bacteriophage [Acinetobacter baumannii SDF] gi|169152197|emb|CAP01101.1| putative repressor protein from bacteriophage [Acinetobacter baumannii] Length = 254 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 1/88 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G RI+ +R+ TQ ++A V +E + + + +S + Sbjct: 5 ETMGQRIRALRREKKLTQGDLAKIVGVSAPNVTGWEKDAYAPKADPLSKMAAYFGVSTSY 64 Query: 90 IYDG-EVIDRRYEDVTNKKRLDPYAIGA 116 I +G E + LD A Sbjct: 65 ITNGDESGPQLDSGGAQLNVLDIEAFKQ 92 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 35/65 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R++++R++K ++Q + K++G+ ++ +E+ P+ P K+ +I Sbjct: 7 MGQRIRALRREKKLTQGDLAKIVGVSAPNVTGWEKDAYAPKADPLSKMAAYFGVSTSYIT 66 Query: 174 FGDEV 178 GDE Sbjct: 67 NGDES 71 >gi|154506035|ref|ZP_02042773.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC 29149] gi|153793534|gb|EDN75954.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC 29149] Length = 122 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +RKA++ TQ+E++ N A + +E + + + L + Y +S D + + Sbjct: 8 ENLYRLRKAHHYTQQEISDLLNISRQAYSNYETSKRTPDLDSLMRLADIYGVSLDQLVNH 67 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + L +RK +Q E LL + SNYE + P++ ++ + Sbjct: 1 MSNIQLVENLYRLRKAHHYTQQEISDLLNISRQAYSNYETSKRTPDLDSLMRLADIYGVS 60 Query: 169 LDWIY 173 LD + Sbjct: 61 LDQLV 65 >gi|86140990|ref|ZP_01059549.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis MED217] gi|85832932|gb|EAQ51381.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis MED217] Length = 66 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK++R A TQ ++A VN E G S+ A L + S + ++ Sbjct: 3 NNIKELRAALKMTQSDLAQQIEVSRQTVNAIEKGKFDPSLPTAFRLAAVFNCSIEELFVY 62 Query: 94 EVID 97 E Sbjct: 63 ESES 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +R M+Q + + + + T++ E+G+ P + A ++ V ++ ++ Sbjct: 1 MKNNIKELRAALKMTQSDLAQQIEVSRQTVNAIEKGKFDPSLPTAFRLAAVFNCSIEELF 60 >gi|148253753|ref|YP_001238338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405926|gb|ABQ34432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 482 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 13/130 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + IR+ +Q ++A G S VNL E S + L L Y++ + Sbjct: 11 VGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAETYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQ 148 + R+ N+ DP L + +R + +L G+ ++ Y Sbjct: 70 -ATADEDRFFAELNEIFSDPLFRQIELPKQELR--------DLAELCPGITHALQRLYAA 120 Query: 149 GRTIPEIKPA 158 + Sbjct: 121 YAEARRGETL 130 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + IR+ G+SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAETYDLDLRDLATADED 75 >gi|301052920|ref|YP_003791131.1| transcriptional regulator [Bacillus anthracis CI] gi|300375089|gb|ADK03993.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 107 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E + D + + + + + Q + Sbjct: 62 LHDETTKENHLDSEWTQLVKDAMSSGVSKEQFREFLEFTKWKQNQ 106 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|295100170|emb|CBK89259.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 117 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK N +Q+ + ++ +E + + L + +S D + Sbjct: 2 LGENILRLRKGANLSQEALGDIIGVTRQMISNWELEETAPNPEQLKLLSKAFNVSADDLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + + V++ + + AI LK I Sbjct: 62 NNDIQNIIVKKVSDTEIV-VNAIMKVLKVI 90 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G + +RK +SQ G ++G+ +SN+E T P + + + + D + Sbjct: 1 MLGENILRLRKGANLSQEALGDIIGVTRQMISNWELEETAPNPEQLKLLSKAFNVSADDL 60 Query: 173 YFGD 176 D Sbjct: 61 LNND 64 >gi|293381958|ref|ZP_06627920.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312978379|ref|ZP_07790121.1| putative transcriptional regulator [Lactobacillus crispatus CTV-05] gi|290921465|gb|EFD98505.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310894722|gb|EFQ43794.1| putative transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 200 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I + K N+ Q+ +A N AV+ +E+ I + L + ++ D++ Sbjct: 3 LGQKIAALHKKNHLFQEALAEKMNVSRQAVSKWESEQSIPDIEKIVALSELFGVTTDYLL 62 Query: 92 DGEVIDRRYEDVTNK 106 N Sbjct: 63 KSGSPSFELNHKDNN 77 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 29/63 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ ++ K + Q + + + +S +E ++IP+I+ + ++ D+ Sbjct: 1 MRLGQKIAALHKKNHLFQEALAEKMNVSRQAVSKWESEQSIPDIEKIVALSELFGVTTDY 60 Query: 172 IYF 174 + Sbjct: 61 LLK 63 >gi|255305198|ref|ZP_05349370.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 121 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K +RK N TQKE+ N + +E+ L + + +S D++ Sbjct: 2 FGKRLKLLRKELNYTQKELGEKLNISGRIIGYYESEERFPDKEILSKLADLFNVSVDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGM---SQIEFGKLLGM 138 G R E + ++ +K +R + SQ + K+ + Sbjct: 62 -GRTNIRNAEHSAELELIEKLNFSDDIKEALRMISELSPASQEKMMKIAKV 111 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK +RK+ +Q E G+ L + + YE P+ + K+ + +D++ Sbjct: 1 MFGKRLKLLRKELNYTQKELGEKLNISGRIIGYYESEERFPDKEILSKLADLFNVSVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|219667464|ref|YP_002457899.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537724|gb|ACL19463.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 113 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 4/97 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V ++ R+ TQK++A ++ ++ +E G S I L + N EI+ D IY Sbjct: 8 VAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLDDIY 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 ++T D A+ + + + D M Sbjct: 68 GISDKKISPVELTE----DELALISNFRKLSHDNKMK 100 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-F 174 L+ R+ KG++Q + LG+ ++T+S++E+G +I I + +LD IY Sbjct: 10 ENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLDDIYGI 69 Query: 175 GDEVIVPKSIKRAKGNQSS--KKSKKDKK 201 D+ I P + + S +K D K Sbjct: 70 SDKKISPVELTEDELALISNFRKLSHDNK 98 >gi|30019433|ref|NP_831064.1| SinR protein [Bacillus cereus ATCC 14579] gi|206967979|ref|ZP_03228935.1| transcriptional regulator SinR [Bacillus cereus AH1134] gi|228920093|ref|ZP_04083442.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228951761|ref|ZP_04113860.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043120|ref|ZP_04190847.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676] gi|229068931|ref|ZP_04202225.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185] gi|229078565|ref|ZP_04211123.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2] gi|229126696|ref|ZP_04255708.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4] gi|229143985|ref|ZP_04272401.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24] gi|229177788|ref|ZP_04305161.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W] gi|296501962|ref|YP_003663662.1| SinR protein [Bacillus thuringiensis BMB171] gi|29894977|gb|AAP08265.1| SinR protein [Bacillus cereus ATCC 14579] gi|206736899|gb|EDZ54046.1| transcriptional regulator SinR [Bacillus cereus AH1134] gi|228605579|gb|EEK63027.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W] gi|228639382|gb|EEK95796.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24] gi|228656636|gb|EEL12462.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4] gi|228704709|gb|EEL57137.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2] gi|228714215|gb|EEL66096.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185] gi|228726212|gb|EEL77442.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676] gi|228807883|gb|EEM54403.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839549|gb|EEM84841.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296323014|gb|ADH05942.1| SinR protein [Bacillus thuringiensis BMB171] Length = 107 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + + Q + Sbjct: 62 LHDETTKETNLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQ 106 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|319743893|gb|EFV96285.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 150 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 1/111 (0%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + VG +IK R TQ ++A + + ++ +E G + L + +E + Sbjct: 2 ELNQYVGNKIKQFRLEKKLTQTQLADLLDTTKQTISRYEKGDRKANQDVLFALSDLFEKT 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQIEFGKLL 136 D + + + + A L K +++ + I +G L Sbjct: 62 IDDFFPPITKETAVQLQQQSSTTEINNKVALLDKKLKEPRHSDWISYGDKL 112 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K R +K ++Q + LL T+S YE+G + + +K +D Sbjct: 4 NQYVGNKIKQFRLEKKLTQTQLADLLDTTKQTISRYEKGDRKANQDVLFALSDLFEKTID 63 Query: 171 WIY--FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + E V + + ++K + DKK P Sbjct: 64 DFFPPITKETAVQLQQQSSTTEINNKVALLDKKLKEP 100 >gi|319787703|ref|YP_004147178.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466215|gb|ADV27947.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 182 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 37/103 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R A +Q+E+A S ++L E S S+ + + IS Sbjct: 2 DIGARLQRVRTARGLSQRELARRVGVTNSTISLIEQNKVSPSVSSLKKVLDGIPISLADF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + ++ + E P + + Q + Sbjct: 62 FTQDLDPGQPEQPFYTADELPDVGNNDIHYYLVGQHRPQRQMC 104 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KH 168 IGARL+ +R +G+SQ E + +G+ NST+S EQ + P + +K V Sbjct: 1 MDIGARLQRVRTARGLSQRELARRVGVTNSTISLIEQNKVSPSVSSLKK---VLDGIPIS 57 Query: 169 LDWIYFGD 176 L + D Sbjct: 58 LADFFTQD 65 >gi|229096929|ref|ZP_04227898.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] gi|228686539|gb|EEL40448.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] Length = 113 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K +R TQ ++A N + + EN S+ + + + +S D++ Sbjct: 3 FGEKLKQLRGKR--TQGDVASVLNISRATYSHLENNRIEPSMSLLNSIADLFCVSTDYLL 60 Query: 92 DGEVIDRRYEDVTN 105 R E+ Sbjct: 61 GRSSDPRLTEEEDK 74 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + +Q + +L + +T S+ E R P + I + D+ Sbjct: 1 MTFGEKLKQLRGKR--TQGDVASVLNISRATYSHLENNRIEPSMSLLNSIADLFCVSTDY 58 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + + N+ +++ Sbjct: 59 LLGRSSDPRLTEEEDKTANEMARR 82 >gi|229101980|ref|ZP_04232694.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-28] gi|228681563|gb|EEL35726.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-28] Length = 107 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQ 129 E D + + K R+ +Q Sbjct: 62 LHDETEKEARLDSEWTQLVKDAMNSGVSKEQFREFLEFTQ 101 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|153950714|ref|YP_001399331.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|152962209|gb|ABS49670.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] Length = 135 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + G R+K++RK +KTQKE+A S N +E+GM + L Sbjct: 10 QTEEQRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELL 69 Query: 84 EISFDWIYDGEVIDRRYEDVT 104 S D++ G + T Sbjct: 70 VTSIDYLLLGSSNETSSIRNT 90 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G RLK +RK + +Q E +G+ S + YE G IP + ++ +D++ Sbjct: 17 AFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYL 76 Query: 173 YFG 175 G Sbjct: 77 LLG 79 >gi|332519788|ref|ZP_08396252.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044347|gb|EGI80541.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] Length = 258 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 29/83 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK +R +Q+ +A N S + +E S +I + + + ++I D + Sbjct: 4 ISKNIKHLRNLKKLSQEGLAEELNVTRSRIGSYEENRSSPTIEFLIAFSDYFKIPIDILL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 ++ + Sbjct: 64 RNDLTKAKDFSFIELNNQRVLFP 86 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +K +R K +SQ + L + S + +YE+ R+ P I+ K +D Sbjct: 1 MNYISKNIKHLRNLKKLSQEGLAEELNVTRSRIGSYEENRSSPTIEFLIAFSDYFKIPID 60 Query: 171 WIYFGD 176 + D Sbjct: 61 ILLRND 66 >gi|326382822|ref|ZP_08204512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326198412|gb|EGD55596.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 186 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 28/56 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G R++++R A + E+A A+ ++ ++ E+G + +I L ++ Sbjct: 6 IGDRLRELRAARGLSLSELARRADIGKATLSEIESGRRNPNIETLYALCAPLDVPL 61 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG RL+ +R +G+S E + + +TLS E GR P I+ + Sbjct: 1 MNDLGIGDRLRELRAARGLSLSELARRADIGKATLSEIESGRRNPNIETLYALCAPLDVP 60 Query: 169 L 169 L Sbjct: 61 L 61 >gi|300854943|ref|YP_003779927.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435058|gb|ADK14825.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 64 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK +RK Q+++A N +N EN + ++ A+ L + D ++ Sbjct: 3 NNIKVLRKQLGLRQEDVANALNVTRQTINAIENSKYNPTLELAMRLAKLLNTTVDELF 60 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK G+ Q + L + T++ E + P ++ A ++ ++ +D ++ Sbjct: 1 MKNNIKVLRKQLGLRQEDVANALNVTRQTINAIENSKYNPTLELAMRLAKLLNTTVDELF 60 >gi|291458779|ref|ZP_06598169.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418696|gb|EFE92415.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 183 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 6/136 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK T K++ E+ + +E G + ++ L ++ + + Sbjct: 3 IGENIRRIRKERGLTLKQLGDEVGVSEAYIRAYETGRRNPKLKSLEALAKALHVNVEALT 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG-KLLGMPNSTLSNYEQGR 150 + + + + L + +G +QI L + +S L YE+ + Sbjct: 63 GADFDGVKAMHMLFQI---FRQYSGELVEYKDKEGNNQIAVSFGSLMLMSSWLERYEEYQ 119 Query: 151 TIPEIKPARKIKQVTK 166 IK KIK V + Sbjct: 120 KE--IKECEKIKDVFE 133 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 33/61 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ IRK++G++ + G +G+ + + YE GR P++K + + +++ Sbjct: 1 MTIGENIRRIRKERGLTLKQLGDEVGVSEAYIRAYETGRRNPKLKSLEALAKALHVNVEA 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|268611394|ref|ZP_06145121.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 78 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI+D+R+ N+ TQ MA + + +E+ + + L Y+ S D++ Sbjct: 8 RIRDLREDNDMTQAAMAKILRCSQQTYSRYESHTTEIPLESLIALAEYYDTSVDYLLGIT 67 Query: 95 VIDRRYEDVTN 105 + Y+ N Sbjct: 68 DVKEPYKRKRN 78 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +R+D M+Q K+L T S YE T ++ + + +D++ + Sbjct: 9 IRDLREDNDMTQAAMAKILRCSQQTYSRYESHTTEIPLESLIALAEYYDTSVDYLLGITD 68 Query: 178 VIVPKSIKR 186 V P KR Sbjct: 69 VKEPYKRKR 77 >gi|182417831|ref|ZP_02949145.1| HTH-type transcriptional regulator xre [Clostridium butyricum 5521] gi|237668782|ref|ZP_04528766.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378294|gb|EDT75826.1| HTH-type transcriptional regulator xre [Clostridium butyricum 5521] gi|237657130|gb|EEP54686.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 111 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 G R++ +R N TQ+E+A ++ ++ +E L + +S D Sbjct: 1 MPSFGERLRQLRIEKNLTQEELANYFGLHKTRISQYELNKRQADDEMKKKLALYFNVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 W+ I +D L L Sbjct: 61 WLLGLTDIRNYTDDPNITIALHSNTDYDEL 90 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + G RL+ +R +K ++Q E G+ + +S YE + + + +K+ LD Sbjct: 1 MPSFGERLRQLRIEKNLTQEELANYFGLHKTRISQYELNKRQADDEMKKKLALYFNVSLD 60 Query: 171 WIY 173 W+ Sbjct: 61 WLL 63 >gi|319746123|gb|EFV98396.1| prophage Sa05 protein [Streptococcus agalactiae ATCC 13813] Length = 164 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 4/128 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQ+ +A + +ENG A L + + +S ++ G Sbjct: 2 NRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQALADYFNVSVGYLL-G 60 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 D N L+ + ++ E KL + + E ++ Sbjct: 61 YSDDLDLFIHGNLNELEDLPTVKVITNLHFLTNP--EEIEKLKRETLAAIQFIENNVSVL 118 Query: 154 E-IKPARK 160 + A+K Sbjct: 119 SHYETAKK 126 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +RK+KG++Q +G+ TL N+E G+ + A+ + + ++ Sbjct: 1 MNRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQALADYFNVSVGYLL 59 >gi|310826476|ref|YP_003958833.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612] gi|308738210|gb|ADO35870.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612] Length = 148 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 7/140 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RK +Q+E+A ++ +E IR + + Y +S D + Sbjct: 3 LGNSLYKARKRTGLSQEEVAEKLGVSRQTISKWETNETLPDIRQSKQMAQLYHLSLDELI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP------NSTLSN 145 D +V + E++ + K K K + + + + L Sbjct: 63 DFDVDVKEIEEMIEHANEEKQKKMDWTKLWGK-KYPILTVYKEEVDISQYAPRLREMLGQ 121 Query: 146 YEQGRTIPEIKPARKIKQVT 165 E + +K + Sbjct: 122 LESDYHYSALDAMLVLKDIL 141 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G L RK G+SQ E + LG+ T+S +E T+P+I+ ++++ Q+ LD Sbjct: 1 MTLGNSLYKARKRTGLSQEEVAEKLGVSRQTISKWETNETLPDIRQSKQMAQLYHLSLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + D V V + + + K+ K D Sbjct: 61 LIDFD-VDVKEIEEMIEHANEEKQKKMD 87 >gi|302338806|ref|YP_003804012.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301635991|gb|ADK81418.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 191 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 3/99 (3%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 Q VG I+ +RK T ++ + ++ ++ E + +I + +I Sbjct: 4 EQQPPQVGKNIQKVRKEKRLTLGHLSQVSGVSKAMLSQIETEKVNPTIATIWKIAQGLQI 63 Query: 86 SFDWIY---DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 S + + + E + LD G +K + Sbjct: 64 SLNTLLKSNNDEGRRFHVSRSEHITSLDAEEEGVHIKVL 102 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ +RK+K ++ ++ G+ + LS E + P I KI Q + L+ + Sbjct: 12 KNIQKVRKEKRLTLGHLSQVSGVSKAMLSQIETEKVNPTIATIWKIAQGLQISLNTLLK 70 >gi|291297562|ref|YP_003508840.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290566782|gb|ADD39747.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 183 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD- 88 +D+G I+D+R+ + +++A A ++ E G+ S + N ++S Sbjct: 4 RDIGGFIRDLRRNAKVSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIANALKVSTPL 63 Query: 89 -WIYDGEVIDRRYEDVTNKKRLDPY 112 ++ G + + + DP Sbjct: 64 MYLRAGLLKTKDGQGTLATIAGDPL 88 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ +R++ +S + G+ N LS E+G P + ++I K Sbjct: 9 FIRDLRRNAKVSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIANALKVST 61 >gi|219667028|ref|YP_002457463.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537288|gb|ACL19027.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 277 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ I RK TQ+E+A AV+ +E I L +IS D + Sbjct: 4 ELAKNICRYRKEKGFTQEELARKLGVTFQAVSKWETSQTLPDITLLPGLSQLLDISIDKL 63 Query: 91 Y 91 Sbjct: 64 L 64 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RK+KG +Q E + LG+ +S +E +T+P+I + Q+ +D + Sbjct: 7 KNICRYRKEKGFTQEELARKLGVTFQAVSKWETSQTLPDITLLPGLSQLLDISIDKLL 64 >gi|328956459|ref|YP_004373845.1| hypothetical protein CAR_c00780 [Carnobacterium sp. 17-4] gi|328672783|gb|AEB28829.1| hypothetical protein CAR_c00780 [Carnobacterium sp. 17-4] Length = 183 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R A + TQ+++A V+ +E +I L + Y +S D + Sbjct: 3 LGQSLREARAAKDLTQEDIAKVLYVTRQTVSRWEQNKTLPNIFVLQELSSLYGLSIDELI 62 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ E+ + K+ + +A+ L Sbjct: 63 SETKKSIQKKEEEISMKKFNWFALAGVL 90 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G L+ R K ++Q + K+L + T+S +EQ +T+P I +++ + +D Sbjct: 1 MSLGQSLREARAAKDLTQEDIAKVLYVTRQTVSRWEQNKTLPNIFVLQELSSLYGLSIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + KSI++ + S KK Sbjct: 61 LI----SETKKSIQKKEEEISMKK 80 >gi|291530670|emb|CBK96255.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 121 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 35/90 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RI+D+R N +Q E+A A ++ ENG + +Y+ ++S D Sbjct: 9 YKAIGARIRDVRLQRNMSQAELAEKAFISVPHMSEVENGKTKLRLSTFVYITEALQVSAD 68 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + L A + Sbjct: 69 VLLRTNTPEVNGIYQGEFNDLLADCSPAEI 98 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 AIGAR++ +R + MSQ E + + +S E G+T + I + + D Sbjct: 9 YKAIGARIRDVRLQRNMSQAELAEKAFISVPHMSEVENGKTKLRLSTFVYITEALQVSAD 68 Query: 171 WIY 173 + Sbjct: 69 VLL 71 >gi|266620773|ref|ZP_06113708.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288867593|gb|EFC99891.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 113 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 35/98 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V RI+ RK + E+A + E G C SI L L + ++S D+I Sbjct: 8 VAKRIRQRRKELGMSSAEVAGKIGRAVHYYGDIERGTCGMSIETLLDLAHYLDLSVDYIL 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 G+ + R ++ R+ K + Sbjct: 68 FGQAGEERIDNPDLAYRILKKYDEKTQKEAIEMMKFYL 105 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D + R++ RK+ GMS E +G + E+G I+ + + Sbjct: 4 DRAGVAKRIRQRRKELGMSSAEVAGKIGRAVHYYGDIERGTCGMSIETLLDLAHYLDLSV 63 Query: 170 DWIYF---GDEVIVPKSIKRAKGNQSSKKSKKD 199 D+I F G+E I + + +K++K+ Sbjct: 64 DYILFGQAGEERIDNPDLAYRILKKYDEKTQKE 96 >gi|302554854|ref|ZP_07307196.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302472472|gb|EFL35565.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 509 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|322419229|ref|YP_004198452.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320125616|gb|ADW13176.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 187 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K +R A T + +A + ++ EN S I + +++ Sbjct: 5 NIGPRLKKLRLARKLTLQAVATETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQF 64 Query: 91 YDGEVIDRRYE 101 + + DR++E Sbjct: 65 FSEDEDDRKFE 75 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 29/79 (36%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + Y IG RLK +R + ++ G + +S E P I KI + Sbjct: 1 MSEYNIGPRLKKLRLARKLTLQAVATETGFSPALISQIENDNVSPPIATLSKIAKFFDVK 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 L + DE + RA Sbjct: 61 LAQFFSEDEDDRKFEVVRA 79 >gi|297203046|ref|ZP_06920443.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] gi|197712042|gb|EDY56076.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] Length = 509 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + LG S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|149187669|ref|ZP_01865966.1| probable transcriptional regulator [Vibrio shilonii AK1] gi|148838549|gb|EDL55489.1| probable transcriptional regulator [Vibrio shilonii AK1] Length = 180 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG ++K IR +Q+E+A + S ++ E + + S+ + + IS Sbjct: 2 DVGKQLKTIRTMRGMSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 + +V + + ++ D Sbjct: 62 FTLDVEPKDDIFFSAEQMAD 81 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +LK+IR +GMSQ E K G+ NS +S EQ P + +KI + Sbjct: 1 MDVGKQLKTIRTMRGMSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGE 60 Query: 172 IYFGD 176 + D Sbjct: 61 FFTLD 65 >gi|89896521|ref|YP_520008.1| hypothetical protein DSY3775 [Desulfitobacterium hafniense Y51] gi|89335969|dbj|BAE85564.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 63 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK RK N +Q+++A N +N EN ++ A L +++ D +++ Sbjct: 3 NNIKQHRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELFNS 62 Query: 94 E 94 + Sbjct: 63 K 63 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K RK+K +SQ + K + T++ E + P + A K+ +V + +D ++ Sbjct: 1 MNNNIKQHRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELF 60 >gi|296452644|ref|ZP_06894337.1| DNA-binding protein [Clostridium difficile NAP08] gi|296880944|ref|ZP_06904891.1| DNA-binding protein [Clostridium difficile NAP07] gi|296258525|gb|EFH05427.1| DNA-binding protein [Clostridium difficile NAP08] gi|296428057|gb|EFH13957.1| DNA-binding protein [Clostridium difficile NAP07] Length = 364 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + RK TQ E+A +++V+ +E G I + L + I+ D + Sbjct: 5 NIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYLDITFLPQLATYFNITVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E + + +L Sbjct: 65 ICYEPQMMKEDINKLYNKL 83 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 38/78 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ I L RK+KG++Q E +G+ +++S +E G++ +I ++ Sbjct: 1 MNELNIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYLDITFLPQLATYFNIT 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + ++ + I + Sbjct: 61 VDELICYEPQMMKEDINK 78 >gi|325678268|ref|ZP_08157896.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110031|gb|EGC04219.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 199 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 2/88 (2%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I+ +R TQK++A N + AV+ +E G I L ++ + + Sbjct: 7 GALIRKLRVGKGLTQKQLADMINVSDKAVSKWECGGGCPDISLLSALAEIFDTDIQVLLN 66 Query: 93 G--EVIDRRYEDVTNKKRLDPYAIGARL 118 G + D+ D+ + G + Sbjct: 67 GRADKNDKENGDMKKLRSYICKQCGNII 94 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 6/89 (6%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D GA ++ +R KG++Q + ++ + + +S +E G P+I + ++ Sbjct: 1 MDQVKTGALIRKLRVGKGLTQKQLADMINVSDKAVSKWECGGGCPDISLLSALAEIFDTD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + + G ++ K K N KK + Sbjct: 61 IQVLLNG------RADKNDKENGDMKKLR 83 >gi|183601014|ref|ZP_02962507.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC 25827] gi|188019351|gb|EDU57391.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC 25827] Length = 91 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 30/83 (36%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E +Y VG RIK +R N + + + + ++ FE G+ + Sbjct: 1 MENERYKYSLSVGQRIKSLRLQNGWSGEALGKITGISQQQISRFERGVNRIDVESLAKFA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDV 103 N + + + +++ Sbjct: 61 NAFNVDIVVLLSDYDKTIYDKNI 83 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + N++ ++G R+KS+R G S GK+ G+ +S +E+G +++ K Sbjct: 1 MENERYKYSLSVGQRIKSLRLQNGWSGEALGKITGISQQQISRFERGVNRIDVESLAKFA 60 Query: 163 QVTKKHLDWIYFG-DEVIVPKSI 184 + + D+ I K+I Sbjct: 61 NAFNVDIVVLLSDYDKTIYDKNI 83 >gi|134295176|ref|YP_001118911.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134138333|gb|ABO54076.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 221 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 1/103 (0%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 +QE T + P+ + + R++D+R T +A + S ++L E S + Sbjct: 1 MQEATTLPAPDAG-INERIARRVRDLRTLRGYTLDTLAARSGVSRSMISLIERASASPTA 59 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 L +S ++ GE D + + + + + A Sbjct: 60 VVLDKLAAGLGVSLAALFGGERDDAPAQPLVKRAQQAEWRDPA 102 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 28/80 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+ P K+ L ++ G Sbjct: 20 RRVRDLRTLRGYTLDTLAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAALFGG 79 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + P + Q+ + Sbjct: 80 ERDDAPAQPLVKRAQQAEWR 99 >gi|312875437|ref|ZP_07735441.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|315653809|ref|ZP_07906725.1| XRE family transcriptional regulator [Lactobacillus iners ATCC 55195] gi|311089100|gb|EFQ47540.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|315488505|gb|EFU78151.1| XRE family transcriptional regulator [Lactobacillus iners ATCC 55195] Length = 210 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++ R + TQ+E+A +AV +E G + + + ++ D++ Sbjct: 3 LGEKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLL 62 Query: 92 DGEV 95 D + Sbjct: 63 DKDN 66 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 36/71 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++++ R + ++Q E +++ + + ++ +E GR +P++ + I +D++ Sbjct: 5 EKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLLDK 64 Query: 176 DEVIVPKSIKR 186 D I IK+ Sbjct: 65 DNAIDLSIIKK 75 >gi|291279358|ref|YP_003496193.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754060|dbj|BAI80437.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 186 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 37/86 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ +G +++++RK+ + ++A + +S +++ ENG S+ + N + Sbjct: 1 MKNKNNILGEKLRNLRKSQGYSLNQLAKAVGKTKSYISMIENGKAVPSMATLKSITNFFN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 ++ + + D + D Sbjct: 61 VTISDLLEENEKDIHLNKESFIFEKD 86 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +L+++RK +G S + K +G S +S E G+ +P + + I + + Sbjct: 10 EKLRNLRKSQGYSLNQLAKAVGKTKSYISMIENGKAVPSMATLKSITNFFNVTISDLLEE 69 Query: 176 DE 177 +E Sbjct: 70 NE 71 >gi|288561200|ref|YP_003424686.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543910|gb|ADC47794.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 108 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 7/98 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V +KD+RK N TQ++++ +S ++ ENG + ++ L Y S +++ Sbjct: 5 VAKNLKDLRKKNGYTQEQVSDYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSPEYLI 64 Query: 92 -DGEVIDRRYEDVTNKKRLDPYAIGAR------LKSIR 122 + ++ ++ + +++D + LK +R Sbjct: 65 GETDLYEKSTIAFRSDEKVDLNVVAKMNEITGFLKLLR 102 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +RK G +Q + LG+ S LS E G + K+ + +++ Sbjct: 7 KNLKDLRKKNGYTQEQVSDYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSPEYLIGE 66 Query: 176 DEVIVPKSIKRAKGNQS 192 ++ +I + Sbjct: 67 TDLYEKSTIAFRSDEKV 83 >gi|125719026|ref|YP_001036159.1| hypothetical protein SSA_2247 [Streptococcus sanguinis SK36] gi|125498943|gb|ABN45609.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 136 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQILKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQILKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|110636925|ref|YP_677132.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279606|gb|ABG57792.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 75 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 +I++ + K +G +IK +R+A +Q ++ + S + ENG + ++ L Sbjct: 1 MIMSLTKEHFLKTIGKKIKTLREAKGLSQYALSDESGISRSQIVRLENGDLNCTLATLLV 60 Query: 79 LRNEYEISFDWIYD 92 L + + D Sbjct: 61 LAETLGVEPKDLLD 74 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K++R+ KG+SQ G+ S + E G + + + + Sbjct: 16 KKIKTLREAKGLSQYALSDESGISRSQIVRLENGDLNCTLATLLVLAETLGVEPKDLL 73 >gi|145219701|ref|YP_001130410.1| putative prophage repressor [Prosthecochloris vibrioformis DSM 265] gi|145205865|gb|ABP36908.1| putative prophage repressor [Chlorobium phaeovibrioides DSM 265] Length = 241 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 18/124 (14%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R+ Q+E + V+ EN TS L + +S +W+ Sbjct: 7 LGMRIRTVRRHYGLRQEEFGKKIGISGNRVSEIENNKGGTSASVLEELCRSFPVSHEWLL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G N L G K I + + + G+++ + E Sbjct: 67 TG-----------NGSMLRNKETGEESKGISERLTLLESRIGRIINVH-------ENDDR 108 Query: 152 IPEI 155 P + Sbjct: 109 EPSL 112 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R+ G+ Q EFGK +G+ + +S E + ++ + +W+ G Sbjct: 9 MRIRTVRRHYGLRQEEFGKKIGISGNRVSEIENNKGGTSASVLEELCRSFPVSHEWLLTG 68 Query: 176 DEVIV--PKSIKRAKG 189 + ++ ++ + +KG Sbjct: 69 NGSMLRNKETGEESKG 84 >gi|291545678|emb|CBL18786.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 166 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I +R +Q E+A AV+ +ENG + L E+++S + + Sbjct: 7 ILKLRTERGMSQDELADKIMVTRQAVSRWENGDTVPNTDTLKLLSKEFDVSINTLL 62 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +R ++GMSQ E + + +S +E G T+P + + + ++ Sbjct: 1 METKNVILKLRTERGMSQDELADKIMVTRQAVSRWENGDTVPNTDTLKLLSKEFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|288905613|ref|YP_003430835.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288732339|emb|CBI13909.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 147 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +K++R TQ+E+A A++ +E G + L E+ +S + + Sbjct: 2 EIQEVLKNLRDKYQLTQEELAARVLVTRQAISRWETGETQPNTDTLKLLSKEFNVSINTL 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK++R ++Q E + + +S +E G T P + + + ++ Sbjct: 1 MEIQEVLKNLRDKYQLTQEELAARVLVTRQAISRWETGETQPNTDTLKLLSKEFNVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|261253382|ref|ZP_05945955.1| probable transcriptional regulator [Vibrio orientalis CIP 102891] gi|260936773|gb|EEX92762.1| probable transcriptional regulator [Vibrio orientalis CIP 102891] Length = 180 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG ++K IR +Q+E+A + S ++ E + + S+ + + IS Sbjct: 2 DVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 + EV + T + D Sbjct: 62 FTLEVEAKDDIFFTVDQMAD 81 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +LK+IR +G+SQ E K G+ NS +S EQ P + +KI + Sbjct: 1 MDVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGE 60 Query: 172 IYFGD 176 + + Sbjct: 61 FFTLE 65 >gi|197123495|ref|YP_002135446.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173344|gb|ACG74317.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 477 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 32/66 (48%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R+ + +G +++ +R+ N TQ ++A S +NL E+ + + L + ++ Sbjct: 1 MREPGQHLGAKVRALRRQRNLTQVQLADRLGISASYLNLIEHNRRPLPAQLLIKLADLFQ 60 Query: 85 ISFDWI 90 + + Sbjct: 61 LDLKSL 66 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 28/54 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 A+++++R+ + ++Q++ LG+ S L+ E R + K+ + + L Sbjct: 10 AKVRALRRQRNLTQVQLADRLGISASYLNLIEHNRRPLPAQLLIKLADLFQLDL 63 >gi|320333173|ref|YP_004169884.1| helix-turn-helix domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754462|gb|ADV66219.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM 21211] Length = 129 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R++++R K++A A ++ E G + S+ L Y I+ + Sbjct: 2 KLHERLRELRSERGLRLKDVAETAGISVPYLSDLERGRTNPSLDTLQTLAGAYTITVHDL 61 Query: 91 YDG 93 +G Sbjct: 62 LEG 64 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL+ +R ++G+ + + G+ LS+ E+GRT P + + + + Sbjct: 1 MKLHERLRELRSERGLRLKDVAETAGISVPYLSDLERGRTNPSLDTLQTLAGAYTITVHD 60 Query: 172 IYFGDE 177 + G E Sbjct: 61 LLEGVE 66 >gi|292557970|gb|ADE30971.1| DNA-binding protein [Streptococcus suis GZ1] Length = 179 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 46/82 (56%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G+ L +RK++ ++Q E G+ LG+ N T+S +E G +P ++ ++ ++ Sbjct: 1 MDMVKMGSFLAELRKEQKLTQAELGEKLGVTNKTVSRWETGIYMPPVEILEELSRLYGLT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 ++ I G ++ + + A+ N Sbjct: 61 INEILSGRKLTTEEYKEMAESN 82 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 29/79 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G+ + ++RK TQ E+ V+ +E G+ + L Y ++ + I Sbjct: 5 KMGSFLAELRKEQKLTQAELGEKLGVTNKTVSRWETGIYMPPVEILEELSRLYGLTINEI 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 G + + + Sbjct: 65 LSGRKLTTEEYKEMAESNI 83 >gi|283782998|ref|YP_003373752.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|283441145|gb|ADB13611.1| DNA-binding protein [Gardnerella vaginalis 409-05] Length = 210 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 4/107 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++ R TQ+E+A +AV +E G + + + ++ D + Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDHLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL---KSIRKDKGMSQIEFGKL 135 D + + L Y + +L K I+ + + + E+ Sbjct: 63 D-KDNAIDLSIIKKPIDLAKYGLNEKLSVRKKIKMKEQIIRDEYADA 108 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 36/71 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++++ R + G++Q E +++ + + ++ +E GR +P++ + I +D + Sbjct: 5 EKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDHLLDK 64 Query: 176 DEVIVPKSIKR 186 D I IK+ Sbjct: 65 DNAIDLSIIKK 75 >gi|269838246|ref|YP_003320474.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787509|gb|ACZ39652.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 71 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 IK++R+A TQ E+A + + +E G L + +S D I Sbjct: 2 KTIKELREARGWTQLELAYRVGVTPATIYNWEAGRNEPKASQLRKLAQIFGVSMDEI 58 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +R+ +G +Q+E +G+ +T+ N+E GR P+ RK+ Q+ +D I Sbjct: 1 MKTIKELREARGWTQLELAYRVGVTPATIYNWEAGRNEPKASQLRKLAQIFGVSMDEI 58 >gi|210617016|ref|ZP_03291351.1| hypothetical protein CLONEX_03573 [Clostridium nexile DSM 1787] gi|210149539|gb|EEA80548.1| hypothetical protein CLONEX_03573 [Clostridium nexile DSM 1787] Length = 163 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G+ IK++RKA +QKEM+ + S + +EN S + + EIS D + Sbjct: 8 QIGSTIKELRKAKGISQKEMSKLLDIPYSTYSNYENNNREPSADVIKKVSDILEISTDSL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 E + + ++ + + ++ M Sbjct: 68 I--ETAKTKSKTFIDEIDMYVEKFQKDIAERGYNREM 102 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 36/77 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG+ +K +RK KG+SQ E KLL +P ST SNYE P +K+ + + Sbjct: 5 DFIQIGSTIKELRKAKGISQKEMSKLLDIPYSTYSNYENNNREPSADVIKKVSDILEIST 64 Query: 170 DWIYFGDEVIVPKSIKR 186 D + + I Sbjct: 65 DSLIETAKTKSKTFIDE 81 >gi|23098799|ref|NP_692265.1| hypothetical protein OB1344 [Oceanobacillus iheyensis HTE831] gi|22777026|dbj|BAC13300.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 189 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R N KTQ+++A +S ++ ENG +++I + + ++ W+ Sbjct: 9 IGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDALKVPLAWLL 68 Query: 92 DGEVI 96 D + Sbjct: 69 DDKEE 73 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D +IG ++K +R +Q + G+ S LS E G+T I KI K Sbjct: 3 PIDLQSIGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDALKV 62 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 L W+ D+ + + K N+ SK + Sbjct: 63 PLAWLL--DDKEEQDLVIQRKYNRPSKVGDES 92 >gi|307244113|ref|ZP_07526231.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492484|gb|EFM64519.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] Length = 179 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ +R TQ+E+A + ++ EN + S SI + + + Sbjct: 2 EIGEKLRRLRTEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLRDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + EV ++ + +G + K + Sbjct: 62 FADEVNEKVTFAEDDMFETYDEDLGYQFKWL 92 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+ +R +K ++Q E + +S E T P I I ++ +L Sbjct: 1 MEIGEKLRRLRTEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLRD 60 Query: 172 IYFGD 176 + + Sbjct: 61 FFADE 65 >gi|254510250|ref|ZP_05122317.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221533961|gb|EEE36949.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 155 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 48/144 (33%), Gaps = 7/144 (4%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 + S+ + P+ + G R+ R+A TQ ++A ++ + + Sbjct: 17 IEIHVLETSMHDEQDWFGPDTATF----GDRVAGAREAAGMTQTQLARRLGVKKATIVAW 72 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 E+ + + +S W+ GE + ++ + L++IR + Sbjct: 73 EDDLSEPRANKLSMMAGMLNVSIMWLLTGEGDGTVATALAGDTDVELNQLVGELRAIRGE 132 Query: 125 KGMSQIEFGKLLGMPNSTLSNYEQ 148 + + + + E+ Sbjct: 133 MRANSERLAR---VEKALRLKLER 153 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G R+ R+ GM+Q + + LG+ +T+ +E + P + + + Sbjct: 36 DTATFGDRVAGAREAAGMTQTQLARRLGVKKATIVAWEDDLSEPRANKLSMMAGMLNVSI 95 Query: 170 DWIYFGD 176 W+ G+ Sbjct: 96 MWLLTGE 102 >gi|168207127|ref|ZP_02633132.1| transcriptional regulator, XRE family [Clostridium perfringens E str. JGS1987] gi|170661532|gb|EDT14215.1| transcriptional regulator, XRE family [Clostridium perfringens E str. JGS1987] Length = 134 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 36/76 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K +RK N +Q E++ S+++ +E+G ++ + + + +S D++ Sbjct: 12 NNLKTLRKLNLLSQSELSKLLGISRSSLSFYESGESEPTLNVLIKISKFFNVSLDYLIFK 71 Query: 94 EVIDRRYEDVTNKKRL 109 ++ + ++ + L Sbjct: 72 KIDSKFLANLISYDSL 87 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK++RK +SQ E KLLG+ S+LS YE G + P + KI + LD++ Sbjct: 9 FFPNNLKTLRKLNLLSQSELSKLLGISRSSLSFYESGESEPTLNVLIKISKFFNVSLDYL 68 Query: 173 YF 174 F Sbjct: 69 IF 70 >gi|51597909|ref|YP_072100.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108809407|ref|YP_653323.1| putative transcriptional regulator [Yersinia pestis Antiqua] gi|108813719|ref|YP_649486.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|145597534|ref|YP_001161610.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|153997450|ref|ZP_02022550.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|165927582|ref|ZP_02223414.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937413|ref|ZP_02225976.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|166012119|ref|ZP_02233017.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214594|ref|ZP_02240629.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167420515|ref|ZP_02312268.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425474|ref|ZP_02317227.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466471|ref|ZP_02331175.1| putative transcriptional regulatory protein [Yersinia pestis FV-1] gi|218930622|ref|YP_002348497.1| putative transcriptional regulator [Yersinia pestis CO92] gi|229836747|ref|ZP_04456912.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|229839352|ref|ZP_04459511.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899916|ref|ZP_04515057.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904228|ref|ZP_04519339.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|270488666|ref|ZP_06205740.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294505211|ref|YP_003569273.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|51591191|emb|CAH22856.1| putative transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108777367|gb|ABG19886.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108781320|gb|ABG15378.1| putative transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115349233|emb|CAL22200.1| putative transcriptional regulatory protein [Yersinia pestis CO92] gi|145209230|gb|ABP38637.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149289087|gb|EDM39167.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|165914518|gb|EDR33132.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920476|gb|EDR37753.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165988959|gb|EDR41260.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204216|gb|EDR48696.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961321|gb|EDR57342.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055488|gb|EDR65281.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678346|gb|EEO74451.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|229687408|gb|EEO79483.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695718|gb|EEO85765.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705690|gb|EEO91699.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|262363273|gb|ACY59994.1| putative transcriptional regulatory protein [Yersinia pestis D106004] gi|262367348|gb|ACY63905.1| putative transcriptional regulatory protein [Yersinia pestis D182038] gi|270337170|gb|EFA47947.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294355670|gb|ADE66011.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|320017231|gb|ADW00803.1| putative transcriptional regulatory protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 135 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + G R+K++RK +KTQKE+A S N +E+GM + L Sbjct: 10 QTEEQRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELL 69 Query: 84 EISFDWIYDGEVIDRRYEDVT 104 S D++ G + T Sbjct: 70 VTSIDYLLLGSSNETSSIRNT 90 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G RLK +RK + +Q E +G+ S + YE G IP + ++ +D++ Sbjct: 17 AFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYL 76 Query: 173 YFG 175 G Sbjct: 77 LLG 79 >gi|116512114|ref|YP_809330.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|125624033|ref|YP_001032516.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris MG1363] gi|37936252|emb|CAD89881.1| HdiR protein [Lactococcus lactis subsp. cremoris] gi|116107768|gb|ABJ72908.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|124492841|emb|CAL97796.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris MG1363] gi|300070804|gb|ADJ60204.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris NZ9000] Length = 252 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 34/88 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +K +RK TQ ++A ++A L+E + ++ L + Y++ + Sbjct: 2 NFGQNLKKLRKEAKLTQSQLADKLGMKQNAYVLWEQKATNPTLELLEKLADIYDLPIQEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + N + L + + Sbjct: 62 IKNPDNGAEKQLIDNYRSLTGEQQESVI 89 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G LK +RK+ ++Q + LGM + +EQ T P ++ K+ + + Sbjct: 1 MNFGQNLKKLRKEAKLTQSQLADKLGMKQNAYVLWEQKATNPTLELLEKLADIYDLPIQE 60 Query: 172 IYFGDEVIVPKSI 184 + + K + Sbjct: 61 LIKNPDNGAEKQL 73 >gi|307319507|ref|ZP_07598934.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|306894879|gb|EFN25638.1| putative phage repressor [Sinorhizobium meliloti AK83] Length = 263 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI+ RK TQ+++A + +V +E + + L + + Sbjct: 1 MESIGQRIRQRRKQIGITQQQLADAFDIKRVSVTQWEGDITAPDRDKIAKLADLLGCDPE 60 Query: 89 WIYDGEVIDRR 99 W+ G R Sbjct: 61 WLLRGSGDPPR 71 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IG R++ RK G++Q + + +++ +E T P+ K+ + + Sbjct: 1 MESIGQRIRQRRKQIGITQQQLADAFDIKRVSVTQWEGDITAPDRDKIAKLADLLGCDPE 60 Query: 171 WIYFG 175 W+ G Sbjct: 61 WLLRG 65 >gi|304407914|ref|ZP_07389564.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304342933|gb|EFM08777.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 72 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query: 109 LDPYAIGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + I + ++S+R + G M+Q + L+G+ T+ E+G+ P ++ A +I +V K Sbjct: 1 MVQSHITSNIRSLRFNHGEMTQQQLADLVGVTRQTIVAIEKGKYSPSLELAFRIARVFKL 60 Query: 168 HLDWIY-FGDE 177 L+ ++ +GDE Sbjct: 61 SLEEVFTYGDE 71 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + + I+ +R + TQ+++A + E G S S+ A + +++S + + Sbjct: 6 ITSNIRSLRFNHGEMTQQQLADLVGVTRQTIVAIEKGKYSPSLELAFRIARVFKLSLEEV 65 Query: 91 YD 92 + Sbjct: 66 FT 67 >gi|197119614|ref|YP_002140041.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] gi|197088974|gb|ACH40245.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] Length = 110 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 2/102 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK +Q+E+ A+ V E G + S+ + + N + ++ Sbjct: 11 LGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANALTVPIAELF 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + + + L + R + Q + Sbjct: 71 LHRGLLVLSDTDVADVETSMAVLNRVLGNAR--ADIPQRQKA 110 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++RK +G SQ E G+ + + E+G P + I + ++ Sbjct: 14 NVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANALTVPIAELF 70 >gi|218960438|ref|YP_001740213.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas acidaminovorans] gi|167729095|emb|CAO80006.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas acidaminovorans] Length = 356 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 31/77 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG +IK RK N + KE+A + ++ +E G ++ + + ++ +++ Sbjct: 2 NVGEKIKKYRKRLNISGKELAQKLGVTPALISYYEQGKRQVPLKTLMQISEIIKVPLEYL 61 Query: 91 YDGEVIDRRYEDVTNKK 107 + + Sbjct: 62 VTDKEYIAYSAYRGKGR 78 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K RK +S E + LG+ + +S YEQG+ +K +I ++ K L++ Sbjct: 1 MNVGEKIKKYRKRLNISGKELAQKLGVTPALISYYEQGKRQVPLKTLMQISEIIKVPLEY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + E I S R KG + +K+ K++ Sbjct: 61 LVTDKEYIA-YSAYRGKG-RITKEEKEE 86 >gi|116255759|ref|YP_771592.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260407|emb|CAK03511.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 243 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 27/85 (31%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P+ +G ++ RK T ++A ++ ENG S S+ Sbjct: 39 QDPHAVREPKENNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLT 98 Query: 75 YALYLRNEYEISFDWIYDGEVIDRR 99 L + + R Sbjct: 99 TLQSLSRALGVPLTAFFRRFEEPRN 123 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + L+ AIG +++ RK G++ + G+ LS E G P Sbjct: 38 SQDPHAVREPKENNLE-MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPS 96 Query: 155 IKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + L + +E +K +G + ++ + N Sbjct: 97 LTTLQSLSRALGVPLTAFFRRFEEPRNAVFVKAGQGIELERRGTRAGHQYN 147 >gi|134298781|ref|YP_001112277.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051481|gb|ABO49452.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 115 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K +R+ NN +++E+A + A++ +EN + + + ++ D++ Sbjct: 3 FGNRLKSLREKNNISREELAKLLDLSYWAISKYENNERIPDHETINKIADYFIVTIDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 D + + + L+ Sbjct: 63 GR--SDNPSPSPKSTIDEEWPGVANILRR 89 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G RLKS+R+ +S+ E KLL + +S YE IP+ + KI +D+ Sbjct: 1 MSFGNRLKSLREKNNISREELAKLLDLSYWAISKYENNERIPDHETINKIADYFIVTIDY 60 Query: 172 IYFGDEVIVPK 182 + + P Sbjct: 61 LLGRSDNPSPS 71 >gi|309792311|ref|ZP_07686781.1| hypothetical protein OSCT_2732 [Oscillochloris trichoides DG6] gi|308225626|gb|EFO79384.1| hypothetical protein OSCT_2732 [Oscillochloris trichoides DG6] Length = 101 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 5/98 (5%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGAN-----QLESAVNLFEN 66 K +Q+ R + +G R++ R + TQ+ + + + EN Sbjct: 3 KRMQDLPEEYLTHQRALARAIGERLRLRRTILDLTQEHLRARLELAHVYVSRTQYSRIEN 62 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 G S + LR +SFDW+ G + Sbjct: 63 GDTLPSADQLIALRMILGVSFDWLLLGSEDSEKQLSKR 100 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 5/79 (6%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLL-----GMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 AIG RL+ R ++Q L + + S E G T+P ++ + Sbjct: 22 AIGERLRLRRTILDLTQEHLRARLELAHVYVSRTQYSRIENGDTLPSADQLIALRMILGV 81 Query: 168 HLDWIYFGDEVIVPKSIKR 186 DW+ G E + KR Sbjct: 82 SFDWLLLGSEDSEKQLSKR 100 >gi|290968573|ref|ZP_06560111.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] gi|290781226|gb|EFD93816.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] Length = 117 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G IK RK TQ E + AV +E G+ + I L + + ++I Sbjct: 3 LGQEIKFYRKKKGLTQTEFGAVFGMSKQAVYSWETGLYAPDISVLLKMADFFQIPI 58 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +K RK KG++Q EFG + GM + ++E G P+I K+ + + Sbjct: 1 MTLGQEIKFYRKKKGLTQTEFGAVFGMSKQAVYSWETGLYAPDISVLLKMADFFQIPICM 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|242399365|ref|YP_002994789.1| Predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus sibiricus MM 739] gi|242265758|gb|ACS90440.1| Predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus sibiricus MM 739] Length = 65 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R+ TQ+++A + E G S+R A + +++ + I+ Sbjct: 3 NRLRELRELKGLTQEDLAKTLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFKVKIEDIFIY 62 Query: 94 EVI 96 E Sbjct: 63 EDQ 65 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 37/64 (57%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+ KG++Q + K LG+ T+ E+G+ P ++ A KI + K ++ I+ Sbjct: 1 MKNRLRELRELKGLTQEDLAKTLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFKVKIEDIF 60 Query: 174 FGDE 177 ++ Sbjct: 61 IYED 64 >gi|229011674|ref|ZP_04168857.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] gi|229133251|ref|ZP_04262082.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST196] gi|228650195|gb|EEL06199.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST196] gi|228749632|gb|EEL99474.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] Length = 205 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 25 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 84 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + S Sbjct: 85 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNGYA---NTTES 141 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 S+ ++ I K +V L+ ++ GD V +P ++K N+S + + Sbjct: 142 HYSHEDKEE----IAVVMK-GEVY-VELEGNEYFLEEGDVVRIPPNVKHRFLNKSDEMN 194 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 1/106 (0%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + Y+ + Y +G + S RK M+ EF G+ S +S E+G P Sbjct: 5 KGQKMYYDGRKEVVTMIHYRLGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANP 64 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + I + L ++ D + I + K + + D Sbjct: 65 SLNVLELIAKALNVPLFTLFIND-IDTDSLISKKKDRKKVYRENND 109 >gi|119026257|ref|YP_910102.1| putative transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] gi|118765841|dbj|BAF40020.1| putative transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] Length = 158 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 55/144 (38%), Gaps = 18/144 (12%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENG---MCSTSIRYALYLRNEYEISFDWIYD 92 +++IR + +++A + + +FE + + + A + + ++ Sbjct: 24 MQEIRLEKGLSLEQLANLSGVDHERLAMFEGNPESVRNMHLDTACQISKALHCNVLDLHP 83 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 + L+ IR+ +G +Q E ++ G+P +S +E G Sbjct: 84 DSGWRGG-----------IHCAEDGLREIRRTRGYTQSELSEMTGIPQPNISWFETGYRS 132 Query: 153 PE---IKPARKIKQVTKK-HLDWI 172 + AR++ + + +D++ Sbjct: 133 TSGMRLDTARRLSEALQCDPVDFL 156 Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE---QGRTIPEIKPARKIKQVTKK 167 A+ ++ IR +KG+S + L G+ + L+ +E + + A +I + Sbjct: 17 MEALLMGMQEIRLEKGLSLEQLANLSGVDHERLAMFEGNPESVRNMHLDTACQISKALHC 76 Query: 168 HLDWI 172 ++ + Sbjct: 77 NVLDL 81 >gi|295090423|emb|CBK76530.1| Predicted transcriptional regulators [Clostridium cf. saccharolyticum K10] Length = 171 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK++RKA +Q+E+++ N + V+ +E G+ + L +E + S + G Sbjct: 4 ENIKNLRKAKGLSQEELSVKLNVVRQTVSKWEKGLSVPDSNMLISLADELDTSVSILL-G 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 E + + + K + L+ ++ K Q Sbjct: 63 ETVQEPCVNELDLKSISEKLEKINLQFAKRSKMRIQ 98 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K++RK KG+SQ E L + T+S +E+G ++P+ + + I Sbjct: 1 MLNENIKNLRKAKGLSQEELSVKLNVVRQTVSKWEKGLSVPDSNMLISLADELDTSVS-I 59 Query: 173 YFGDEVIVP 181 G+ V P Sbjct: 60 LLGETVQEP 68 >gi|253576963|ref|ZP_04854287.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843694|gb|EES71718.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 115 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ IRK++ QKE A+ + ++ E G+C S + L+N ++ +W+ Sbjct: 2 NLGEKVRTIRKSHELNQKEFALKIGVSQGTLSDIERGVCLPSCETIIALKNTFQCDLNWL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 D + + + ++++ Sbjct: 62 LS--DYDESFSQTPTYISSEELKLLTSIRAL 90 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++++IRK ++Q EF +G+ TLS+ E+G +P + +K + L+W Sbjct: 1 MNLGEKVRTIRKSHELNQKEFALKIGVSQGTLSDIERGVCLPSCETIIALKNTFQCDLNW 60 Query: 172 IYFG 175 + Sbjct: 61 LLSD 64 >gi|199597306|ref|ZP_03210737.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus HN001] gi|229551815|ref|ZP_04440540.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258507963|ref|YP_003170714.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus GG] gi|258539216|ref|YP_003173715.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|199591822|gb|EDY99897.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus HN001] gi|229314759|gb|EEN80732.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257147890|emb|CAR86863.1| Spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus GG] gi|257150892|emb|CAR89864.1| Spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|259649290|dbj|BAI41452.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 179 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 40/91 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++I+D+R N TQ+E+ + + ++ E+ S S+ + + S Sbjct: 2 DIGSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQSSPSLETFFDILSVLGESPADF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E +D +++ G +LK + Sbjct: 62 FREEPVDSLVYHASDQVTYLDEDKGYQLKWL 92 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG++++ +R K ++Q E G+ + +S E ++ P ++ I V + Sbjct: 1 MDIGSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQSSPSLETFFDILSVLGESPAD 60 Query: 172 IYFGDEV 178 + + V Sbjct: 61 FFREEPV 67 >gi|194430884|ref|ZP_03063221.1| repressor protein C2 [Escherichia coli B171] gi|194411072|gb|EDX27557.1| repressor protein C2 [Escherichia coli B171] gi|324014358|gb|EGB83577.1| helix-turn-helix protein [Escherichia coli MS 60-1] Length = 207 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R K R TQ E+A A + ++ E+G R L L + S DW+ Sbjct: 3 LAARFKARRLELGMTQVEVANSAGVSQQSIESIESGRTR-KPRNLLDLAKALKCSPDWLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +G+ I E T + + Y L R ++ Sbjct: 62 NGKNIMPLAEISTRRIPILSYVQAGELTEARDITDLT 98 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ AR K+ R + GM+Q+E G+ ++ + E GRT + + + + K DW Sbjct: 1 MSLAARFKARRLELGMTQVEVANSAGVSQQSIESIESGRTR-KPRNLLDLAKALKCSPDW 59 Query: 172 IYFGDEVIVPKSIKRAK 188 + G ++ I + Sbjct: 60 LLNGKNIMPLAEISTRR 76 >gi|154499014|ref|ZP_02037392.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC 29799] gi|261366721|ref|ZP_05979604.1| transcriptional regulator, AraC family [Subdoligranulum variabile DSM 15176] gi|332655640|ref|ZP_08421260.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|150271854|gb|EDM99080.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC 29799] gi|282571548|gb|EFB77083.1| transcriptional regulator, AraC family [Subdoligranulum variabile DSM 15176] gi|332515537|gb|EGJ45171.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 109 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 9/116 (7%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + ++G I+ R+ TQ ++ + ++ E G S+ L Sbjct: 3 EKKDINIEIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLL 62 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 +S D I G ++ D + + Q +L M Sbjct: 63 GVSADRIIFGTDEPEAEALALARRISDIKP---------EYRQQVQELLSAILNMS 109 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ R+ G +Q ++LGM + LS E+G + ++ +++ ++ D I FG Sbjct: 14 NIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGVSADRIIFGT 73 Query: 177 EVIVPKSIKRAKGNQSSK 194 + +++ A+ K Sbjct: 74 DEPEAEALALARRISDIK 91 >gi|170697860|ref|ZP_02888945.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171317970|ref|ZP_02907144.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|172064453|ref|YP_001812104.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|170137247|gb|EDT05490.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171096870|gb|EDT41744.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171996970|gb|ACB67888.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 180 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L I + ++ Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNIDVEQLF 60 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + G+ S LS E+G ++P I A K+ + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNIDVEQLFSESH 64 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 65 NRELITVTRA 74 >gi|325689195|gb|EGD31202.1| transcription regulator [Streptococcus sanguinis SK115] Length = 136 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLISISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLISISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|160914966|ref|ZP_02077180.1| hypothetical protein EUBDOL_00974 [Eubacterium dolichum DSM 3991] gi|158433506|gb|EDP11795.1| hypothetical protein EUBDOL_00974 [Eubacterium dolichum DSM 3991] Length = 144 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 34/101 (33%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + RK +Q+ +A ++ +E I A L Y IS D + Sbjct: 2 NIGNHLMMARKRKGLSQESVAEKLGVSRQTISKWETCETLPDICQAKTLATIYGISLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 + + +D+ + + K RK + Sbjct: 62 ITFDSDVQELQDIIERTSEELTNKIDWTKLWRKKYPILNEY 102 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG L RK KG+SQ + LG+ T+S +E T+P+I A+ + + LD Sbjct: 1 MNIGNHLMMARKRKGLSQESVAEKLGVSRQTISKWETCETLPDICQAKTLATIYGISLDE 60 Query: 172 IYFGDEVIVP--KSIKRAKGNQSSK 194 + D + I+R ++K Sbjct: 61 LITFDSDVQELQDIIERTSEELTNK 85 >gi|146318591|ref|YP_001198303.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320791|ref|YP_001200502.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145689397|gb|ABP89903.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145691597|gb|ABP92102.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] Length = 168 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + +R+ +G IK +R+ ++ TQ E A ++++ +ENG + S + Sbjct: 1 MKANMRRSLSMIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRIC 60 Query: 81 NEYEIS 86 ++ +S Sbjct: 61 QKFNVS 66 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+R+ ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 71 VGEDKMLTP 79 >gi|89896705|ref|YP_520192.1| hypothetical protein DSY3959 [Desulfitobacterium hafniense Y51] gi|89336153|dbj|BAE85748.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 106 Score = 69.2 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 4/97 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ R+ TQK++A ++ ++ +E G S I L + N EI+ D IY Sbjct: 1 MAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLDDIY 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 ++T D A+ + + + D M Sbjct: 61 GISDKKISPVELTE----DELALISNFRKLSHDNKMK 93 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+ R+ KG++Q + LG+ ++T+S++E+G +I I + +LD IY Sbjct: 1 MAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLDDIY 60 Query: 174 -FGDEVIVPKSIKRAKGNQSS--KKSKKDKK 201 D+ I P + + S +K D K Sbjct: 61 GISDKKISPVELTEDELALISNFRKLSHDNK 91 >gi|324993465|gb|EGC25385.1| transcriptional regulator [Streptococcus sanguinis SK405] gi|327458828|gb|EGF05176.1| transcriptional regulator [Streptococcus sanguinis SK1057] Length = 65 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R + TQ ++A + L E G + S+ L + + D ++ E Sbjct: 6 RLKMARAERDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLFWIE 65 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RLK R ++ M+Q + +G+ T+ E G+ P + I + K LD Sbjct: 1 MAKNLRLKMARAERDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQ 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 LFWIE 65 >gi|296270730|ref|YP_003653362.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093517|gb|ADG89469.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 192 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 23/70 (32%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P+ + ++ +R T E+A + + E G + SI + Sbjct: 2 PDPETINAAIAANVRSLRGQRGMTLDELAARSKVSRGMLIQIEQGRTNPSINTLNRIAEA 61 Query: 83 YEISFDWIYD 92 +S + + Sbjct: 62 LGVSIGRLVE 71 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI A ++S+R +GM+ E + L EQGRT P I +I + + + Sbjct: 10 AIAANVRSLRGQRGMTLDELAARSKVSRGMLIQIEQGRTNPSINTLNRIAEALGVSIGRL 69 Query: 173 YFGDEVIVPKSIKRAK 188 +V V + ++ ++ Sbjct: 70 VEVADVPVVRIVQPSE 85 >gi|258517274|ref|YP_003193496.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780979|gb|ACV64873.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 170 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 3/99 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +RK +QK+ + ++ E S + +L Y S WI Sbjct: 3 VGVRVQKLRKHLGLSQKDFGECLGISQKHISQIEKDTREPSEQLIKHLCLRYNTSESWIK 62 Query: 92 DGEVIDRRYEDVTNKK---RLDPYAIGARLKSIRKDKGM 127 GE + + K RL + +I K+ G+ Sbjct: 63 TGEGEMFTSPEESLKNIKTRLGERVFMDAINNIMKENGL 101 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 36/81 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ +RK G+SQ +FG+ LG+ +S E+ P + + + W Sbjct: 1 MYVGVRVQKLRKHLGLSQKDFGECLGISQKHISQIEKDTREPSEQLIKHLCLRYNTSESW 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 I G+ + + K ++ Sbjct: 61 IKTGEGEMFTSPEESLKNIKT 81 >gi|167582937|ref|ZP_02375811.1| DNA-binding protein [Burkholderia thailandensis TXDOH] Length = 185 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSESR 64 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 65 DRELITVTRA 74 >gi|319936625|ref|ZP_08011038.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1] gi|319808182|gb|EFW04747.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1] Length = 118 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK++R+ TQ+E + V+ E + S I+ + + + ++I Sbjct: 2 SKIKELREQCGLTQEEFGDKIGMSQQTVSRIEKNIDSLDIKTLKIISQYFHVPINYIIGE 61 Query: 94 EVIDRR 99 + Sbjct: 62 DTKKYN 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +++K +R+ G++Q EFG +GM T+S E+ +IK + I Q +++I Sbjct: 1 MSKIKELREQCGLTQEEFGDKIGMSQQTVSRIEKNIDSLDIKTLKIISQYFHVPINYIIG 60 Query: 175 GDEVIVPKSIKRA 187 D + + Sbjct: 61 EDTKKYNMYVHES 73 >gi|266623508|ref|ZP_06116443.1| putative transcriptional regulatory protein [Clostridium hathewayi DSM 13479] gi|288864705|gb|EFC97003.1| putative transcriptional regulatory protein [Clostridium hathewayi DSM 13479] Length = 345 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ RK N TQ+EM AVN +ENG I + I+ D + Sbjct: 2 QLGQVIRKYRKNKNMTQEEMGGRLGVTAPAVNKWENGASMPDITLLAPIARLLGITTDIL 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ RK+K M+Q E G LG+ ++ +E G ++P+I I ++ D Sbjct: 1 MQLGQVIRKYRKNKNMTQEEMGGRLGVTAPAVNKWENGASMPDITLLAPIARLLGITTDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + E + + IK S +K + + Sbjct: 61 LLSFREELTAEEIKALVYEADSMLKEKPYEEA 92 >gi|262283647|ref|ZP_06061412.1| transcription regulator [Streptococcus sp. 2_1_36FAA] gi|262260704|gb|EEY79405.1| transcription regulator [Streptococcus sp. 2_1_36FAA] Length = 136 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQVLKDIRQQNQLTQETLAERLKVSRSAIARWESEKGIPDIGNLITISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIREDECLEKKVIEDSKAKK 80 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQVLKDIRQQNQLTQETLAERLKVSRSAIARWESEKGIPDIGNLITISREFDISLDTL 61 Query: 91 YDGEV 95 + Sbjct: 62 IREDE 66 >gi|260550053|ref|ZP_05824267.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406808|gb|EEX00287.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 197 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+++R A T +A SA++L E G S + L N E Sbjct: 1 MDDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLE 60 Query: 85 ISFDWIYDGEVIDRRYEDV 103 + I+ E + Sbjct: 61 VPLTKIFTNETTSPSPQPF 79 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + + S +S E+G T P K+ + L I+ Sbjct: 10 HRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTKIFT- 68 Query: 176 DEVIVPK 182 +E P Sbjct: 69 NETTSPS 75 >gi|225571231|ref|ZP_03780229.1| hypothetical protein CLOHYLEM_07320 [Clostridium hylemonae DSM 15053] gi|225160062|gb|EEG72681.1| hypothetical protein CLOHYLEM_07320 [Clostridium hylemonae DSM 15053] Length = 233 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 5/115 (4%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++VG IK R A T +E+A ++ +S ++ +E G+ S + + + ++IS Sbjct: 3 IDENVGKNIKKYRLAYKLTLEELAKKIHKSKSTMSKYEKGLISLDVATLEEIADVFQISP 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF----GKLLGM 138 ++ + + + + + LD + + R + + +G+ Sbjct: 63 AYLLAVQDEEL-HSRLEPGEFLDRQYMYSYDGRSRHILKSVMERYQIPGSEQIGI 116 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 33/89 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K R ++ E K + ST+S YE+G ++ +I V + ++ Sbjct: 9 KNIKKYRLAYKLTLEELAKKIHKSKSTMSKYEKGLISLDVATLEEIADVFQISPAYLLAV 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + ++ + D +S + Sbjct: 69 QDEELHSRLEPGEFLDRQYMYSYDGRSRH 97 >gi|241666493|ref|YP_002984577.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861950|gb|ACS59615.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 227 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 27/85 (31%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P+ +G ++ RK T ++A ++ ENG S S+ Sbjct: 23 QDPHAVREPKENNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLT 82 Query: 75 YALYLRNEYEISFDWIYDGEVIDRR 99 L + + R Sbjct: 83 TLQSLSRALGVPLTAFFRRFEEPRN 107 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + L+ AIG +++ RK G++ + G+ LS E G P Sbjct: 22 SQDPHAVREPKENNLE-MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPS 80 Query: 155 IKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + L + +E +K +G + ++ + N Sbjct: 81 LTTLQSLSRALGVPLTAFFRRFEEPRNAVFVKAGQGIELERRGTRAGHQYN 131 >gi|108760806|ref|YP_635476.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108464686|gb|ABF89871.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 156 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 36/110 (32%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 +Q ++ P + +G +D R TQ ++A + E G Sbjct: 1 MQPSAVMREPVDHKLAAVLGGAARDARLRLGLTQGDVAERMGMAMEVYSRLERGKMLPRT 60 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + L + ++S D + D + DP + + +R+ Sbjct: 61 QTLRRLCDVLQVSADTLLGVGRPDGAPVMPRKTVKEDPVELRRMTRKLRE 110 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R G++Q + + +GM S E+G+ +P + R++ V + D + Sbjct: 24 RDARLRLGLTQGDVAERMGMAMEVYSRLERGKMLPRTQTLRRLCDVLQVSADTLL 78 >gi|9633025|ref|NP_050133.1| hypothetical protein phiadhp25 [Lactobacillus phage phiadh] gi|5730282|emb|CAB52503.1| hypothetical protein [Lactobacillus phage phiadh] Length = 112 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++R ANN +Q E+ N A++ +E+G + L + + +S ++ G Sbjct: 2 NRIKNLRIANNISQAELGNKVNASNQAISAYESGFRNPKPETWQALADFFNVSVPYL-QG 60 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 ++ D + + Sbjct: 61 KIFKEDLSPELQDMFDDIQDLVTLI 85 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+K++R +SQ E G + N +S YE G P+ + + + + ++ Sbjct: 1 MNRIKNLRIANNISQAELGNKVNASNQAISAYESGFRNPKPETWQALADFFNVSVPYL 58 >gi|152974807|ref|YP_001374324.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023559|gb|ABS21329.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 107 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDTL 61 Query: 91 YDGEVIDRRYEDVTN----KKRLDPYAIGARLKSIRKDKGMSQIE 131 D K+ ++ + + + Q + Sbjct: 62 LHDTTPLENQLDSEWTHLVKEAMNSGVSKEQFREFIEFSKWKQNQ 106 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R +G+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDT 60 Query: 172 IYFG 175 + Sbjct: 61 LLHD 64 >gi|86138085|ref|ZP_01056660.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85825112|gb|EAQ45312.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 221 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G +++++RK T +A ++ ENG+ S S+ L + Sbjct: 30 EKNLEVAIGRQVRELRKRQRLTGANLAELTGLSVGMLSKIENGVISPSLNTLQVLADALR 89 Query: 85 ISFDWIYDG 93 + ++ G Sbjct: 90 VPLMQLFSG 98 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG +++ +RK + ++ +L G+ LS E G P + + + + L + Sbjct: 36 AIGRQVRELRKRQRLTGANLAELTGLSVGMLSKIENGVISPSLNTLQVLADALRVPLMQL 95 Query: 173 YFG-DEVIVPKSIKRAKGNQSSKKSKK 198 + G +E +K +G + + + Sbjct: 96 FSGFEEARGAMHVKAGQGAEIERAGTR 122 >gi|332798978|ref|YP_004460477.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696713|gb|AEE91170.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 85 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 29/59 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+ +R + TQ+++A S + ++E G + ++ A + + + + ++I+ Sbjct: 6 NRLAMLRNSKGLTQRDLANELGVSPSTIAMYEIGERTPGLKMAKIIADFFGVGIEYIFF 64 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL +R KG++Q + LG+ ST++ YE G P +K A+ I +++I+ Sbjct: 4 RRNRLAMLRNSKGLTQRDLANELGVSPSTIAMYEIGERTPGLKMAKIIADFFGVGIEYIF 63 Query: 174 F 174 F Sbjct: 64 F 64 >gi|325263349|ref|ZP_08130084.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324031742|gb|EGB93022.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 354 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 29/80 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G I +RK TQ+++A AV+ +E I L + D Sbjct: 3 ENLGAHIAALRKTKGMTQEQLAAVLGISAPAVSKWETDSSCPDITLLCPLARALGTNLDT 62 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + E + + ++ Sbjct: 63 LLQFEETLTDEQIAEHINQI 82 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 38/86 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A + ++RK KGM+Q + +LG+ +S +E + P+I + + +LD + Sbjct: 7 AHIAALRKTKGMTQEQLAAVLGISAPAVSKWETDSSCPDITLLCPLARALGTNLDTLLQF 66 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + + I K K+ Sbjct: 67 EETLTDEQIAEHINQIIEAGRAKGKE 92 >gi|295107554|emb|CBL05097.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 451 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + ++G I R A TQ +A ++AV+ +E G + + + I+ Sbjct: 2 HEVNIGATIARERSAAGVTQGALAAHLGVTKAAVSKWELGQSLPDVALLPRIAAYFGITL 61 Query: 88 DWIY 91 D ++ Sbjct: 62 DELF 65 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IGA + R G++Q LG+ + +S +E G+++P++ +I Sbjct: 1 MHEVNIGATIARERSAAGVTQGALAAHLGVTKAAVSKWELGQSLPDVALLPRIAAYFGIT 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 LD ++ + ++ Sbjct: 61 LDELFAFRPQLTEDEVRD 78 >gi|281425108|ref|ZP_06256021.1| DNA-binding protein [Prevotella oris F0302] gi|299142132|ref|ZP_07035265.1| DNA-binding protein [Prevotella oris C735] gi|281400952|gb|EFB31783.1| DNA-binding protein [Prevotella oris F0302] gi|298576221|gb|EFI48094.1| DNA-binding protein [Prevotella oris C735] Length = 184 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 29/80 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R++ +R + +E+A E G S+ + Y Sbjct: 1 MEESIKQIGERLRGLRDVLDIPAEEVAELCGISLDHYLKIEAGEADPSVYRLSKISKRYG 60 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 IS D + GE +T Sbjct: 61 ISLDVLLFGEEPRMSRYYLT 80 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R + E +L G+ E G P + KI + LD + FG Sbjct: 10 ERLRGLRDVLDIPAEEVAELCGISLDHYLKIEAGEADPSVYRLSKISKRYGISLDVLLFG 69 Query: 176 DEVIVPKS--IKRAKGNQSSKKSKKDKKS 202 +E + + + +G + + K ++ Sbjct: 70 EEPRMSRYYLTRDGQGPEIDRGDKYQYQT 98 >gi|149201917|ref|ZP_01878891.1| hypothetical protein RTM1035_05235 [Roseovarius sp. TM1035] gi|149144965|gb|EDM32994.1| hypothetical protein RTM1035_05235 [Roseovarius sp. TM1035] Length = 157 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 7/127 (5%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD G +++ R +Q+E++ + E G S + L+ + + D+ Sbjct: 4 KDFGQSLREWRVTQKLSQRELSAAIGVSRGYIGDIEAGRSEPSRNFLERLQERFGLRADY 63 Query: 90 IYDGEVI----DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ---IEFGKLLGMPNST 142 I GE D T + G +K + K+ G+ F + + + N Sbjct: 64 ILYGEDDPVAADPPKSKHTQLDEMTLMICGEAVKKVYKELGLKLPTKTHFEQAVWIYNEL 123 Query: 143 LSNYEQG 149 ++ E Sbjct: 124 IARMENF 130 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G L+ R + +SQ E +G+ + + E GR+ P ++++ Sbjct: 1 MAKKDFGQSLREWRVTQKLSQRELSAAIGVSRGYIGDIEAGRSEPSRNFLERLQERFGLR 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D+I +G++ V ++K Q Sbjct: 61 ADYILYGEDDPVAADPPKSKHTQ 83 >gi|154247535|ref|YP_001418493.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161620|gb|ABS68836.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 130 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 30/80 (37%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ +G R+K R + +Q+ + + +ENG + + + + Sbjct: 7 KTKELDVVIGFRVKQSRLRSGVSQEALGEHLGITFQQIQKYENGKNRIACSTLVMIADFL 66 Query: 84 EISFDWIYDGEVIDRRYEDV 103 ++S ++ G D Sbjct: 67 KVSALFLLRGTEKDAGALPQ 86 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R G+SQ G+ LG+ + YE G+ I K ++ G E Sbjct: 19 VKQSRLRSGVSQEALGEHLGITFQQIQKYENGKNRIACSTLVMIADFLKVSALFLLRGTE 78 >gi|154502378|ref|ZP_02039438.1| hypothetical protein RUMGNA_00191 [Ruminococcus gnavus ATCC 29149] gi|153797003|gb|EDN79423.1| hypothetical protein RUMGNA_00191 [Ruminococcus gnavus ATCC 29149] Length = 126 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IRKA T + +SA++ E + S + + EY +++DW+ D Sbjct: 4 GERVLEIRKALGLTMDKFGEKLGVQKSAISKIEKDRVNLSDQMVKLICREYNVNYDWLMD 63 Query: 93 GEVIDRRYEDVTNKKRL 109 GE T L Sbjct: 64 GEGEMFSDLPQTVLDEL 80 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 IRK G++ +FG+ LG+ S +S E+ R + + I + + DW+ G+ + Sbjct: 9 EIRKALGLTMDKFGEKLGVQKSAISKIEKDRVNLSDQMVKLICREYNVNYDWLMDGEGEM 68 >gi|110641376|ref|YP_669106.1| transcriptional regulator [Escherichia coli 536] gi|191170900|ref|ZP_03032451.1| probable transcriptional regulator [Escherichia coli F11] gi|218689103|ref|YP_002397315.1| putative transcriptional regulator [Escherichia coli ED1a] gi|110342968|gb|ABG69205.1| probable transcriptional regulator [Escherichia coli 536] gi|190908632|gb|EDV68220.1| probable transcriptional regulator [Escherichia coli F11] gi|218426667|emb|CAR07498.1| conserved hypothetical protein , putative transcriptional regulator [Escherichia coli ED1a] gi|324015721|gb|EGB84940.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 60-1] Length = 194 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ + +RK+ N T E+A + ++ ++ E G S S L N I+ + Sbjct: 13 DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANALNITLSKL 72 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + ++ + Sbjct: 73 FAELEMQQNSLVLLADQQQHWIDEETGI 100 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 D K ++ I L +RK + ++ E + G+ + +S E+G + P + Sbjct: 1 MDKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSR 60 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + L ++ E+ + A Q Sbjct: 61 LANALNITLSKLFAELEMQQNSLVLLADQQQ 91 >gi|320533160|ref|ZP_08033882.1| toxin-antitoxin system, antitoxin component, Xre family [Actinomyces sp. oral taxon 171 str. F0337] gi|329944730|ref|ZP_08292809.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] gi|320134620|gb|EFW26846.1| toxin-antitoxin system, antitoxin component, Xre family [Actinomyces sp. oral taxon 171 str. F0337] gi|328529866|gb|EGF56756.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 67 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK +R + +Q + LG+ T++ E GR P + A I +V ++ I+ Sbjct: 1 MRNDLKVLRAQRSWTQARLAEELGVSRQTVNALEAGRYDPSLPLAFTIARVFGLTIEEIF 60 Query: 174 FGDEV 178 F D+ Sbjct: 61 FPDDD 65 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + TQ +A VN E G S+ A + + ++ + I+ + Sbjct: 5 LKVLRAQRSWTQARLAEELGVSRQTVNALEAGRYDPSLPLAFTIARVFGLTIEEIFFPDD 64 Query: 96 I 96 Sbjct: 65 D 65 >gi|319744698|gb|EFV97043.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 168 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + +R+ +G IK +R+ ++ TQ E A ++++ +ENG + S + Sbjct: 1 MKANMRRSLSMIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRIC 60 Query: 81 NEYEIS 86 ++ +S Sbjct: 61 QKFNVS 66 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+R+ ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 71 VGEDKMLTP 79 >gi|332653138|ref|ZP_08418883.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518284|gb|EGJ47887.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 348 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 2/108 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I++ RKA + TQ+++A AV+ +E G I L + + Sbjct: 2 KLGEIIREKRKALSLTQEQLADYLGVSAPAVHKWEKGTTYPDITTLPALARVLRTDLNTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL 136 + E + LD R + Q + L Sbjct: 62 LSFQEELTDEEITRFLEELDRMISQESYDAAFQRAMDQIHQYPTCEKL 109 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ RK ++Q + LG+ + +E+G T P+I + +V + L+ Sbjct: 1 MKLGEIIREKRKALSLTQEQLADYLGVSAPAVHKWEKGTTYPDITTLPALARVLRTDLNT 60 Query: 172 IYFGDEVIVPKSIKR 186 + E + + I R Sbjct: 61 LLSFQEELTDEEITR 75 >gi|282864596|ref|ZP_06273651.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282560535|gb|EFB66082.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 203 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R++ R+ + T ++ S ++ E G ++ L EY S D + Sbjct: 13 MGPRLRAARERHGATLAGVSCATGVPPSTLSRIETGRRRPTLEVLTRLAKEYGASLDEL 71 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL++ R+ G + G+P STLS E GR P ++ ++ + LD + Sbjct: 12 AMGPRLRAARERHGATLAGVSCATGVPPSTLSRIETGRRRPTLEVLTRLAKEYGASLDEL 71 >gi|326204985|ref|ZP_08194836.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984851|gb|EGD45696.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 206 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 31/75 (41%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + E + G R+K +R+ +N +Q+E+ +A+ +E + L Sbjct: 122 SVEHSRKEGSFGIRLKRLRRIHNISQEELGKVLGVGRTAIANWETNQTEPTGENIKKLAE 181 Query: 82 EYEISFDWIYDGEVI 96 + ++ D++ + Sbjct: 182 LFRVTTDYLLCYKAN 196 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 34/56 (60%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R+ +SQ E GK+LG+ + ++N+E +T P + +K+ ++ + D++ Sbjct: 136 LKRLRRIHNISQEELGKVLGVGRTAIANWETNQTEPTGENIKKLAELFRVTTDYLL 191 >gi|242373319|ref|ZP_04818893.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349029|gb|EES40631.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 179 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 40/91 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++++++R+ N TQ+E+A + + ++ E+ S S+ L + S Sbjct: 2 DIGSKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLSILEVLGTSASDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ ++ D Y G L + Sbjct: 62 FKESTNEKVLYKKADQVTYDEYDRGYILNWL 92 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG++L+++R+ K ++Q E + + +S E P ++ I +V Sbjct: 1 MDIGSKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLSILEVLGTSASD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + E K + + + + + Sbjct: 61 FF--KESTNEKVLYKKADQVTYDEYDRGY 87 >gi|222825161|dbj|BAH22318.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 133 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K +G RI+ R +Q+++ + +E G + L + Sbjct: 7 IDKQIGERIRKRRLMCGFSQRDLGKKLGISFQHIQGYETGEVRLIVDRLYKLAEALSVDM 66 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + D + + I ++ RK K + + Sbjct: 67 SYFFTKASEDLHDKAFRSDVG--SEEISRLVREYRKIKDEALRDI 109 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R G SQ + GK LG+ + YE G + K+ + + + + Sbjct: 13 ERIRKRRLMCGFSQRDLGKKLGISFQHIQGYETGEVRLIVDRLYKLAEALSVDMSYFFTK 72 Query: 176 -DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 E + K+ + G++ + ++ + Sbjct: 73 ASEDLHDKAFRSDVGSEEISRLVREYRK 100 >gi|217967677|ref|YP_002353183.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336776|gb|ACK42569.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM 6724] Length = 110 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + K + R+K++R+ T+KE+A+ S + +E + + Sbjct: 2 DEDKEIKIISERLKEVREKRGLTKKELALKIGVSPSTITRYEEEGRVPKLTILKRISEVL 61 Query: 84 EISFDWIYDGEVID 97 ++S D++ E + Sbjct: 62 DVSIDYLLGKEEVK 75 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 38/63 (60%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ +G+++ E +G+ ST++ YE+ +P++ ++I +V +D++ Sbjct: 12 ERLKEVREKRGLTKKELALKIGVSPSTITRYEEEGRVPKLTILKRISEVLDVSIDYLLGK 71 Query: 176 DEV 178 +EV Sbjct: 72 EEV 74 >gi|56961997|ref|YP_173719.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56908231|dbj|BAD62758.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 63 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R+ TQ E+A N + L E + S++ + L + D ++ Sbjct: 3 NRVKQARRDLGLTQGELADKVNVSRQTIGLIEKNHYNPSLKLCIALAKALNKTLDQLF 60 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R+D G++Q E + + T+ E+ P +K + + K LD ++ Sbjct: 1 MENRVKQARRDLGLTQGELADKVNVSRQTIGLIEKNHYNPSLKLCIALAKALNKTLDQLF 60 Query: 174 FG 175 + Sbjct: 61 WE 62 >gi|15830918|ref|NP_309691.1| hypothetical protein ECs1664 [Escherichia coli O157:H7 str. Sakai] gi|168756532|ref|ZP_02781539.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|168771061|ref|ZP_02796068.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|168782527|ref|ZP_02807534.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|168787669|ref|ZP_02812676.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC869] gi|195938823|ref|ZP_03084205.1| hypothetical protein EscherichcoliO157_20767 [Escherichia coli O157:H7 str. EC4024] gi|208806950|ref|ZP_03249287.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208815716|ref|ZP_03256895.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208822642|ref|ZP_03262961.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396624|ref|YP_002270109.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4115] gi|217328417|ref|ZP_03444499.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. TW14588] gi|261224908|ref|ZP_05939189.1| hypothetical protein EscherichiacoliO157_09974 [Escherichia coli O157:H7 str. FRIK2000] gi|261257236|ref|ZP_05949769.1| hypothetical protein EscherichiacoliO157EcO_15627 [Escherichia coli O157:H7 str. FRIK966] gi|291281508|ref|YP_003498326.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|13361128|dbj|BAB35087.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|188999971|gb|EDU68957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189356349|gb|EDU74768.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189360126|gb|EDU78545.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189372536|gb|EDU90952.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC869] gi|208726751|gb|EDZ76352.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732364|gb|EDZ81052.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208738127|gb|EDZ85810.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158024|gb|ACI35457.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4115] gi|217318844|gb|EEC27270.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. TW14588] gi|290761381|gb|ADD55342.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|320638144|gb|EFX07905.1| hypothetical protein ECO5101_18657 [Escherichia coli O157:H7 str. G5101] gi|320643564|gb|EFX12729.1| hypothetical protein ECO9389_18000 [Escherichia coli O157:H- str. 493-89] gi|320648883|gb|EFX17507.1| hypothetical protein ECO2687_10168 [Escherichia coli O157:H- str. H 2687] gi|320654469|gb|EFX22513.1| hypothetical protein ECO7815_15353 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320664959|gb|EFX32089.1| hypothetical protein ECOSU61_14426 [Escherichia coli O157:H7 str. LSU-61] gi|326346440|gb|EGD70177.1| transcriptional regulator, XRE family [Escherichia coli O157:H7 str. 1125] Length = 194 Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ + +RK+ N T E+A + ++ ++ E G S S L N I+ + Sbjct: 13 DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANALNITLSKL 72 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + ++ + Sbjct: 73 FAELEMQQNSLVLLADQQQHWIDEETGI 100 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 D K ++ I L +RK + ++ E + G+ + +S E+G + P + Sbjct: 1 MDKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSR 60 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + L ++ E+ + A Q Sbjct: 61 LANALNITLSKLFAELEMQQNSLVLLADQQQ 91 >gi|329115906|ref|ZP_08244623.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906311|gb|EGE53225.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 135 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 42/112 (37%), Gaps = 1/112 (0%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++RK TQ+++ + +E +I L +++S D++ Sbjct: 7 RLKELRKEKKITQQDLGNAIGVSRVTITKWEKEYIEPNISQITDLAIFFDVSIDYLTGKT 66 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 +D + + ++ ++ I ++ + K G+ + + Sbjct: 67 DLDYSKLNAESVLKMPQEEREKFIRQIIDHILLTI-QVSKQKGVSETEIERI 117 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK +RK+K ++Q + G +G+ T++ +E+ P I + +D Sbjct: 1 MSKFSTRLKELRKEKKITQQDLGNAIGVSRVTITKWEKEYIEPNISQITDLAIFFDVSID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ ++ K + ++ +K Sbjct: 61 YLTGKTDLDYSKLNAESVLKMPQEEREK 88 >gi|322372600|ref|ZP_08047136.1| putative transcriptional regulator [Streptococcus sp. C150] gi|321277642|gb|EFX54711.1| putative transcriptional regulator [Streptococcus sp. C150] Length = 159 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +RK TQ E+A ++++ +ENG + S + +S+ + Sbjct: 3 IGENIKAVRKYKQLTQPELANLLGISRNSLSRYENGTSAISTELLDRICQTLNVSYVDLV 62 Query: 92 DGEV 95 E Sbjct: 63 GEEK 66 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K++RK K ++Q E LLG+ ++LS YE G + + +I Q Sbjct: 1 MMIGENIKAVRKYKQLTQPELANLLGISRNSLSRYENGTSAISTELLDRICQTLNVSYVD 60 Query: 172 IYFGDEVIVP 181 + ++++ P Sbjct: 61 LVGEEKMLTP 70 >gi|313898339|ref|ZP_07831876.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956721|gb|EFR38352.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 401 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +I +RK TQ ++A N AV+ +E I L IS D Sbjct: 4 EQFAEKIIRLRKKKGYTQAQLAELLNVSNKAVSRWETAEGYPDITLLKPLSEALGISCDE 63 Query: 90 IY 91 + Sbjct: 64 LL 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++ +RK KG +Q + +LL + N +S +E P+I + + + Sbjct: 1 MNKEQFAEKIIRLRKKKGYTQAQLAELLNVSNKAVSRWETAEGYPDITLLKPLSEALGIS 60 Query: 169 LDWIY 173 D + Sbjct: 61 CDELL 65 >gi|262403095|ref|ZP_06079655.1| hypothetical protein VOA_001077 [Vibrio sp. RC586] gi|262350594|gb|EEY99727.1| hypothetical protein VOA_001077 [Vibrio sp. RC586] Length = 223 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 3/88 (3%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ EI+ G R+K +R Q +MA + ++ +E G + SI + Sbjct: 1 MSTEIKADESTFGGRLKSVRTQLGLNQSQMAGQIGVSKDTLSRYERGELTPSIDVLKRII 60 Query: 81 NEY---EISFDWIYDGEVIDRRYEDVTN 105 Y ++ D + V N Sbjct: 61 ESYSSEGVTADALLLDTKPSIPTYCVEN 88 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 ++ + + D G RLKS+R G++Q + +G+ TLS YE+G P I ++I Sbjct: 1 MSTEIKADESTFGGRLKSVRTQLGLNQSQMAGQIGVSKDTLSRYERGELTPSIDVLKRII 60 Query: 163 QVT---KKHLDWIYFGDEVIVP 181 + D + + +P Sbjct: 61 ESYSSEGVTADALLLDTKPSIP 82 >gi|254500741|ref|ZP_05112892.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222436812|gb|EEE43491.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 186 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R+A + + + + S V+ E G + ++ L L + F + Sbjct: 12 ERLKKARRAQGLSLEAVEKLSGVSRSMVSQIERGESNPTVATLLNLTRALNVDFAGLLGE 71 Query: 94 EVIDRRYE--DVTNKKRLDPYAIGARLKSI 121 E ++ R E V+ LD G +++ + Sbjct: 72 EAVEDRVEIVKVSQTPALDRAGDGCKIRIL 101 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK R+ +G+S KL G+ S +S E+G + P + + + + Sbjct: 11 PERLKKARRAQGLSLEAVEKLSGVSRSMVSQIERGESNPTVATLLNLTRALNVDFAGLL- 69 Query: 175 GDEVIVPKS 183 G+E + + Sbjct: 70 GEEAVEDRV 78 >gi|197301908|ref|ZP_03166972.1| hypothetical protein RUMLAC_00630 [Ruminococcus lactaris ATCC 29176] gi|197298976|gb|EDY33512.1| hypothetical protein RUMLAC_00630 [Ruminococcus lactaris ATCC 29176] Length = 111 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 4/107 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +K+ R TQ+ A + S E G SI + L + +S D+ Sbjct: 7 KSIGRTLKERRLQLGYTQELAAEKSGISYSYYTKIERGEQLPSIEICVQLAQTFHLSLDY 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 G D L L S+RK + + Q +LL Sbjct: 67 WLLGTSSDAEISS--ELIDLAYSLREIDLNSLRKVEKLLQK--AELL 109 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L+ +IG LK R G +Q + G+ S + E+G +P I+ ++ Q Sbjct: 1 MDLLNSKSIGRTLKERRLQLGYTQELAAEKSGISYSYYTKIERGEQLPSIEICVQLAQTF 60 Query: 166 KKHLDWIYFGDEVIVPKSIK 185 LD+ G S + Sbjct: 61 HLSLDYWLLGTSSDAEISSE 80 >gi|328477982|gb|EGF47897.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 70 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R ++ TQ+++A V+ ENG + S+ A L + + + + I+ Sbjct: 3 NRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIFID 62 Query: 94 EVIDRR 99 E D + Sbjct: 63 ENADSQ 68 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++++R ++Q + L + T+S+ E GR P + A K+ V ++ I+ Sbjct: 1 MENRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIF 60 Query: 174 FGD 176 + Sbjct: 61 IDE 63 >gi|325838540|ref|ZP_08166562.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490835|gb|EGC93137.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 110 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK R+A +Q++++ + AV +E+ I + + +S D + Sbjct: 5 LGEKIKKYRQARGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDSLL 64 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 43/91 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K R+ +G+SQ + + L + ++ +E + IP+I + I ++ LD Sbjct: 3 MTLGEKIKKYRQARGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDS 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + DE I +K + KK+ K + Sbjct: 63 LLAMDEKIGSIVLKEEIDIEKYKKTGKARSK 93 >gi|319776198|ref|YP_004138686.1| putative phage repressor [Haemophilus influenzae F3047] gi|301168972|emb|CBW28569.1| unnamed protein product [Haemophilus influenzae 10810] gi|317450789|emb|CBY87011.1| Putative phage repressor [Haemophilus influenzae F3047] Length = 219 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 1/74 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI+ R TQK++A A++ +E+ + + L E Sbjct: 4 ETIGKRIRQRRTELKLTQKDVANAIKGVSHVAISQWESDTTKPNSENLVDLSTVLECDLL 63 Query: 89 WIYDGEVIDRRYED 102 W+ GE Sbjct: 64 WLLRGEGSSSNVMP 77 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + IG R++ R + ++Q + + G+ + +S +E T P + + V + Sbjct: 1 MKSETIGKRIRQRRTELKLTQKDVANAIKGVSHVAISQWESDTTKPNSENLVDLSTVLEC 60 Query: 168 HLDWIYFGD 176 L W+ G+ Sbjct: 61 DLLWLLRGE 69 >gi|241894930|ref|ZP_04782226.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides ATCC 33313] gi|241871938|gb|EER75689.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides ATCC 33313] Length = 171 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK+N TQ ++A + ++L E S+ L + + +S D++ G Sbjct: 3 NKIKELRKSNGLTQAQLASKIGVSQPTLSLLEKDGN--SLEDMLPIAQYFGVSLDYLVSG 60 Query: 94 E 94 Sbjct: 61 H 61 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K +RK G++Q + +G+ TLS E+ ++ I Q LD++ Sbjct: 1 MLNKIKELRKSNGLTQAQLASKIGVSQPTLSLLEKDGN--SLEDMLPIAQYFGVSLDYLV 58 Query: 174 FG 175 G Sbjct: 59 SG 60 >gi|167749383|ref|ZP_02421510.1| hypothetical protein EUBSIR_00335 [Eubacterium siraeum DSM 15702] gi|167657664|gb|EDS01794.1| hypothetical protein EUBSIR_00335 [Eubacterium siraeum DSM 15702] gi|291556256|emb|CBL33373.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 108 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI RK Q E+ + ++ E G + S+ + L + + D Sbjct: 5 YTALGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLNTTPD 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + G Y++ K RL Sbjct: 65 YFLLGTASAELYDNDIASKITPMTDEHKRL 94 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++D A+G R+ RK+ G+ Q E +L+ + LSN E GR+ P ++ + V Sbjct: 1 MKIDYTALGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLN 60 Query: 167 KHLDWIYFG 175 D+ G Sbjct: 61 TTPDYFLLG 69 >gi|154151191|ref|YP_001404809.1| XRE family transcriptional regulator [Candidatus Methanoregula boonei 6A8] gi|153999743|gb|ABS56166.1| transcriptional regulator, XRE family [Methanoregula boonei 6A8] Length = 69 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 35/66 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K R ++Q + +G+ T+ E+G+ +P + A +I + K +++ I+ Sbjct: 1 MKNKIKVYRAMHDLTQEDLAGAIGVTRQTILAIEKGKYVPSLDLAFRISRYFKVNIEEIF 60 Query: 174 FGDEVI 179 F DE I Sbjct: 61 FYDENI 66 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 27/65 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK R ++ TQ+++A + E G S+ A + ++++ + I+ Sbjct: 3 NKIKVYRAMHDLTQEDLAGAIGVTRQTILAIEKGKYVPSLDLAFRISRYFKVNIEEIFFY 62 Query: 94 EVIDR 98 + Sbjct: 63 DENIN 67 >gi|238024352|ref|YP_002908584.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237879017|gb|ACR31349.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia glumae BGR1] Length = 204 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R++ +R + E+A+ A V+ E + S+R LR + + Sbjct: 18 DVGGRLRALRVEQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALSVPLSAL 77 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 + E ++ D Sbjct: 78 LEDEGAASDPVVGDFVRKAD 97 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + L +G RL+++R ++G+S E G+ T+S E+ + P ++ Sbjct: 2 KPAQVKKKDVTELRHSDVGGRLRALRVEQGLSVNELAMRAGVSVGTVSQVERNKANPSVR 61 Query: 157 PARKIKQVTKKHLDWIYFGD 176 +++Q L + + Sbjct: 62 ILERLRQALSVPLSALLEDE 81 >gi|229029051|ref|ZP_04185150.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271] gi|228732331|gb|EEL83214.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271] Length = 107 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 E + D + + K Sbjct: 62 LHDETTKENHLDSEWTQLVKDAMSSGVSKE 91 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|227877994|ref|ZP_03995996.1| helix-turn-helix domain protein [Lactobacillus crispatus JV-V01] gi|256844374|ref|ZP_05549860.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256849226|ref|ZP_05554659.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262047242|ref|ZP_06020200.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|227862415|gb|EEJ69932.1| helix-turn-helix domain protein [Lactobacillus crispatus JV-V01] gi|256613452|gb|EEU18655.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256714002|gb|EEU28990.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260572487|gb|EEX29049.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] Length = 226 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I + K N+ Q+ +A N AV+ +E+ I + L + ++ D++ Sbjct: 29 LGQKIAALHKKNHLFQEALAEKMNVSRQAVSKWESEQSIPDIEKIVALSELFGVTTDYLL 88 Query: 92 DGEVIDRRYEDVTNK 106 N Sbjct: 89 KSGSPSFELNHKDNN 103 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 30/70 (42%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 K +G ++ ++ K + Q + + + +S +E ++IP+I+ + ++ Sbjct: 20 KTKGRSIMRLGQKIAALHKKNHLFQEALAEKMNVSRQAVSKWESEQSIPDIEKIVALSEL 79 Query: 165 TKKHLDWIYF 174 D++ Sbjct: 80 FGVTTDYLLK 89 >gi|225377886|ref|ZP_03755107.1| hypothetical protein ROSEINA2194_03546 [Roseburia inulinivorans DSM 16841] gi|225210255|gb|EEG92609.1| hypothetical protein ROSEINA2194_03546 [Roseburia inulinivorans DSM 16841] Length = 107 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK++R A T++++A A+ E G+ I + + + I+ D++ Sbjct: 9 GERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHITLDYLVC 68 Query: 93 G 93 G Sbjct: 69 G 69 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 D G R+K +R + M++ + + +G+ L E G +I I ++ Sbjct: 1 MYYDIVNSGERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFH 60 Query: 167 KHLDWIYFGDEVIVP 181 LD++ G E V Sbjct: 61 ITLDYLVCGCERKVE 75 >gi|115359639|ref|YP_776777.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284927|gb|ABI90443.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] Length = 180 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L I + ++ Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNIDVEQLF 60 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + G+ S LS E+G ++P I A K+ + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNIDVEQLFSESH 64 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 65 NRELITVTRA 74 >gi|332798977|ref|YP_004460476.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696712|gb|AEE91169.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 131 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 27/67 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R +Q+E+A S + ++E G I L + + + +++ Sbjct: 4 DRIRKLRNDKGLSQRELAKMLKISPSTIAMYELGKREPDIAMFQRLADFFNVPVEYVMGV 63 Query: 94 EVIDRRY 100 + + Sbjct: 64 SDEPKPW 70 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R DKG+SQ E K+L + ST++ YE G+ P+I +++ ++++ Sbjct: 1 MFNDRIRKLRNDKGLSQRELAKMLKISPSTIAMYELGKREPDIAMFQRLADFFNVPVEYV 60 Query: 173 YFGDEVIVP 181 + P Sbjct: 61 MGVSDEPKP 69 >gi|325697270|gb|EGD39156.1| transcription regulator [Streptococcus sanguinis SK160] Length = 136 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQVLKDIRQQNQLTQETLAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQVLKDIRQQNQLTQETLAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|168483734|ref|ZP_02708686.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|168484686|ref|ZP_02709638.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|168484792|ref|ZP_02709737.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|169834423|ref|YP_001693454.1| hypothetical protein SPH_0030 [Streptococcus pneumoniae Hungary19A-6] gi|307066658|ref|YP_003875624.1| hypothetical protein SPAP_0028 [Streptococcus pneumoniae AP200] gi|168996925|gb|ACA37537.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6] gi|172042013|gb|EDT50059.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|172042145|gb|EDT50191.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|172042979|gb|EDT51025.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|306408195|gb|ADM83622.1| hypothetical protein SPAP_0028 [Streptococcus phage PhiSpn_200] gi|332205020|gb|EGJ19084.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 68 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LK++R K Q + + + + T N+E+G+T P + A +I +D I F Sbjct: 3 KMTLKTLRTLKNWRQADAAEAIDVSVDTWGNWERGKTEPTVTQAYQIATTFGVSIDDIIF 62 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K +R N Q + A + +E G ++ A + + +S D I Sbjct: 6 LKTLRTLKNWRQADAAEAIDVSVDTWGNWERGKTEPTVTQAYQIATTFGVSIDDIIF 62 >gi|297582579|ref|YP_003698359.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141036|gb|ADH97793.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 210 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT I RK N +Q +A AV+ +E G S + + L + Sbjct: 3 LGTTISQRRKELNLSQAFVAEEMGVSRQAVSKWETGQSVPSTAHLIRLAEVLGCDVQDLA 62 Query: 92 DGEVIDRRYED 102 + + + + Sbjct: 63 EPDQEAQPAQP 73 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G + RK+ +SQ + +G+ +S +E G+++P ++ +V + Sbjct: 1 MALGTTISQRRKELNLSQAFVAEEMGVSRQAVSKWETGQSVPSTAHLIRLAEVLGCDVQD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + D+ P G++ Sbjct: 61 LAEPDQEAQPAQPAEESGSKK 81 >gi|154496157|ref|ZP_02034853.1| hypothetical protein BACCAP_00441 [Bacteroides capillosus ATCC 29799] gi|150274712|gb|EDN01776.1| hypothetical protein BACCAP_00441 [Bacteroides capillosus ATCC 29799] Length = 240 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D + +R+ +Q+ +A ++ ++ +ENG+ + + + + Y +S D++ Sbjct: 11 DFSRSLSLLRQEKGASQRAVAKDLGISQALLSHYENGIREPGLAFVIKACDYYNVSADFL 70 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 G + R + ++ D A Sbjct: 71 L-GRTLTRDGTTIGAEELYDYSA 92 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY------- 173 +R++KG SQ K LG+ + LS+YE G P + K D++ Sbjct: 19 LRQEKGASQRAVAKDLGISQALLSHYENGIREPGLAFVIKACDYYNVSADFLLGRTLTRD 78 Query: 174 ---FGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 G E + S ++ S + KK Sbjct: 79 GTTIGAEELYDYSAEKDNVLHGSIMATLSKK 109 >gi|47459180|ref|YP_016042.1| adenine-specific DNA methyltransferase [Mycoplasma mobile 163K] gi|47458509|gb|AAT27831.1| adenine-specific DNA methyltransferase [Mycoplasma mobile 163K] Length = 361 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 36/79 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ GTR+K++RK+ +QKE++ + ++ ENG+ + ++ + I Sbjct: 6 ENFGTRLKELRKSKQISQKELSESTGIVREQISRIENGLVNPTLDTLHKISLALNIFLHE 65 Query: 90 IYDGEVIDRRYEDVTNKKR 108 + + E+ + + Sbjct: 66 LLNFEINSKENSKLAKFTF 84 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK K +SQ E + G+ +S E G P + KI L + E Sbjct: 12 LKELRKSKQISQKELSESTGIVREQISRIENGLVNPTLDTLHKISLALNIFLHELLNF-E 70 Query: 178 VIVPKSIKRAK 188 + ++ K AK Sbjct: 71 INSKENSKLAK 81 >gi|15807558|ref|NP_296294.1| transcriptional regulator [Deinococcus radiodurans R1] gi|6460399|gb|AAF12112.1|AE002086_4 transcriptional regulator, HTH_3 family [Deinococcus radiodurans R1] Length = 131 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R++++R K++A A+ ++ E G + S+ L Y I+ + Sbjct: 4 KLHERLRELRSERGLRLKDVAEVADISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDL 63 Query: 91 YDG 93 +G Sbjct: 64 LEG 66 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+ +R ++G+ + ++ + LS+ E+GRT P ++ + + + + Sbjct: 6 HERLRELRSERGLRLKDVAEVADISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDLLE 65 Query: 175 GDE 177 G E Sbjct: 66 GVE 68 >gi|85707731|ref|ZP_01038797.1| putative DNA binding protein [Erythrobacter sp. NAP1] gi|85689265|gb|EAQ29268.1| putative DNA binding protein [Erythrobacter sp. NAP1] Length = 68 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R+A +Q E+A +N E S+ AL + + +S ++ Sbjct: 3 NRLKYHREAEGWSQGELARRLGVSRQTINAVETDKYDPSLPLALRMAKLFGVSVPDLF 60 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK R+ +G SQ E + LG+ T++ E + P + A ++ ++ + ++ Sbjct: 1 MENRLKYHREAEGWSQGELARRLGVSRQTINAVETDKYDPSLPLALRMAKLFGVSVPDLF 60 Query: 174 FG 175 Sbjct: 61 ID 62 >gi|326692332|ref|ZP_08229337.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 248 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 9/117 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK+ TQ+ A +V+ +E + L + + + ++ Sbjct: 3 IGNQIKALRKSLGLTQQTFADKLFISYQSVSNWERAKSHPTAEMMLTIIETFHLPLNFFM 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG--MSQIEFGKLLGMPNSTLSNY 146 + + +D + A +KS+R + KL G+ + Y Sbjct: 63 PSDQNSQDLDDEQ-------LILAAFIKSMRASADKIPTMATIAKLAGLSIERVMAY 112 Score = 57.7 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG ++K++RK G++Q F L + ++SN+E+ ++ P + I + L++ Sbjct: 1 MAIGNQIKALRKSLGLTQQTFADKLFISYQSVSNWERAKSHPTAEMMLTIIETFHLPLNF 60 Query: 172 IYFGDEVIVP 181 D+ Sbjct: 61 FMPSDQNSQD 70 >gi|303245781|ref|ZP_07332064.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302493044|gb|EFL52909.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 124 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 9/80 (11%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 20 IITPEIRQYWKDVGTRI-------KDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 +++ E + +V R+ + +R T +++A + ++ E G S Sbjct: 45 LVSGEEETFPAEVADRLLAGEHPVRVLRSHRGMTLQQVADICGVTNAHISQIERGKRCMS 104 Query: 73 IRYALYLRNEYEISFDWIYD 92 + + + + Sbjct: 105 TELLQKMAEALRVDIELLLP 124 Score = 61.5 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 36/83 (43%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + +++ E + A ++ +R +GM+ + + G+ N+ +S E+G+ Sbjct: 41 FYRKLVSGEEETFPAEVADRLLAGEHPVRVLRSHRGMTLQQVADICGVTNAHISQIERGK 100 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 + +K+ + + ++ + Sbjct: 101 RCMSTELLQKMAEALRVDIELLL 123 >gi|260586996|ref|ZP_05852909.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542680|gb|EEX23249.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 185 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 30/83 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +RK N TQ+++A + AV +E G + + +E+S + + G Sbjct: 5 EQLSKLRKEANLTQEDLAEKCDVSRQAVAKWEGGESLPDVYKISQIAKTFEVSLEELIWG 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGA 116 + + + Sbjct: 65 KDRQDSQMSIARDIYMQFIDNME 87 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 33/71 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L +RK+ ++Q + + + ++ +E G ++P++ +I + + L+ Sbjct: 1 MVFSEQLSKLRKEANLTQEDLAEKCDVSRQAVAKWEGGESLPDVYKISQIAKTFEVSLEE 60 Query: 172 IYFGDEVIVPK 182 + +G + + Sbjct: 61 LIWGKDRQDSQ 71 >gi|225374970|ref|ZP_03752191.1| hypothetical protein ROSEINA2194_00593 [Roseburia inulinivorans DSM 16841] gi|225213184|gb|EEG95538.1| hypothetical protein ROSEINA2194_00593 [Roseburia inulinivorans DSM 16841] Length = 85 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 34/75 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+++R+++N +Q+ + N + AV+ E C+ S + + + ++ D+I Sbjct: 4 NRIRELRRSHNMSQEALGTIINTTQQAVSKMEKDTCAISTDLLISMARYFNVTTDYILGL 63 Query: 94 EVIDRRYEDVTNKKR 108 I R + Sbjct: 64 SDIKRDLSGQIRMNQ 78 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R+ MSQ G ++ +S E+ + + D+I Sbjct: 1 MTENRIRELRRSHNMSQEALGTIINTTQQAVSKMEKDTCAISTDLLISMARYFNVTTDYI 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|209918882|ref|YP_002292966.1| putative phage repressor [Escherichia coli SE11] gi|209912141|dbj|BAG77215.1| putative phage repressor [Escherichia coli SE11] Length = 215 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 28/85 (32%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G R+K +RK TQ E+ + + +E + + L + Sbjct: 2 MESLGIRLKKLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTES 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYA 113 ++ G +N PY Sbjct: 62 YLLYGVSSPELSFVQSNPGTKIPYF 86 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 36/74 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RKDKG++Q+E GKL G+ T+ +E+ P K K+ Q ++ +G Sbjct: 9 LKKLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLLYGVS 68 Query: 178 VIVPKSIKRAKGNQ 191 ++ G + Sbjct: 69 SPELSFVQSNPGTK 82 >gi|183597904|ref|ZP_02959397.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] gi|188022666|gb|EDU60706.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] Length = 119 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 19 LIITPEIRQ--YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 +I+ E+ + + VG I +RK T K++A N + ++ +E G+C+ ++ Sbjct: 1 MIVEHEVSKSIFMIAVGKEIFRLRKKRGLTGKQLAKKLNVSQQQISRYERGVCNINVDTL 60 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVT 104 + +E S + + + Sbjct: 61 FVILHELGCSLSNFFSAVYLSINDTEKK 88 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 K + A+G + +RK +G++ + K L + +S YE+G + I Sbjct: 9 KSIFMIAVGKEIFRLRKKRGLTGKQLAKKLNVSQQQISRYERGVCNINVDTLFVILHELG 68 Query: 167 KHLDWIY 173 L + Sbjct: 69 CSLSNFF 75 >gi|293400331|ref|ZP_06644477.1| helix-turn-helix protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306731|gb|EFE47974.1| helix-turn-helix protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 353 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+++R TQ+++A +A++ +E+ + I L + +S D + Sbjct: 5 LGNKIRELRLHKQLTQEQLAQLCKVSSAAISKWEHDLSYPDITLLPILARIFHVSTDELL 64 Query: 92 DGEVIDRRYEDVT 104 + E E V Sbjct: 65 NFESEPSEEEIVE 77 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 35/73 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y++G +++ +R K ++Q + +L + ++ +S +E + P+I + ++ D Sbjct: 3 YSLGNKIRELRLHKQLTQEQLAQLCKVSSAAISKWEHDLSYPDITLLPILARIFHVSTDE 62 Query: 172 IYFGDEVIVPKSI 184 + + + I Sbjct: 63 LLNFESEPSEEEI 75 >gi|229074639|ref|ZP_04207662.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-18] gi|228708521|gb|EEL60671.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-18] Length = 107 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQ 129 E D + + K R+ +Q Sbjct: 62 LHDETEKEARLDSEWTQLVKDAMNSGVSKEQFREFLEFTQ 101 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|225377903|ref|ZP_03755124.1| hypothetical protein ROSEINA2194_03563 [Roseburia inulinivorans DSM 16841] gi|260438260|ref|ZP_05792076.1| putative transcriptional regulator [Butyrivibrio crossotus DSM 2876] gi|225210234|gb|EEG92588.1| hypothetical protein ROSEINA2194_03563 [Roseburia inulinivorans DSM 16841] gi|292809280|gb|EFF68485.1| putative transcriptional regulator [Butyrivibrio crossotus DSM 2876] Length = 107 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK++R A T++++A A+ E G+ I + + + I+ D++ Sbjct: 9 GERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHITLDYLVC 68 Query: 93 G 93 G Sbjct: 69 G 69 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 D G R+K +R + M++ + + +G+ L E G +I I ++ Sbjct: 1 MYYDIVNSGERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFH 60 Query: 167 KHLDWIYFGDE 177 LD++ G E Sbjct: 61 ITLDYLVCGCE 71 >gi|167588649|ref|ZP_02381037.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ubonensis Bu] Length = 180 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L + + ++ Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + G+ S LS E+G ++P I A K+ + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSERH 64 Query: 178 VIVPKSIKRAKGN 190 ++ RA Sbjct: 65 NRELITVTRADER 77 >gi|149920439|ref|ZP_01908908.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149818754|gb|EDM78197.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 199 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 6/93 (6%) Query: 4 NPF-----LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLE 58 PF ET + ++ +++ E + +G RI+++R+ + T K+M N Sbjct: 105 KPFSGEDMRETIARVARKKGIVVRRE-DELHITIGKRIREVRRQRSLTLKQMGRRTNLSV 163 Query: 59 SAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 S ++ E S S+ + N ++ ++ Sbjct: 164 SLLSQIERAESSASVSSLFKIANALDVRISELF 196 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R++ +R+ + ++ + G+ + S LS E+ + + KI + Sbjct: 134 HITIGKRIREVRRQRSLTLKQMGRRTNLSVSLLSQIERAESSASVSSLFKIANALDVRIS 193 Query: 171 WIY 173 ++ Sbjct: 194 ELF 196 >gi|260495101|ref|ZP_05815230.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|260197544|gb|EEW95062.1| transcriptional regulator [Fusobacterium sp. 3_1_33] Length = 184 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 32/82 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R + +E+A S ++ E G S SI + + ++ ++ Sbjct: 3 IGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + E D R + K + Sbjct: 63 EDEDDDIRNIEYIKKDSIKYIE 84 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+ R DKGMS E + + S LS EQG+ P I+ +KI + + Sbjct: 1 MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 172 IYFGDEV 178 + ++ Sbjct: 61 LLEDEDD 67 >gi|320008066|gb|ADW02916.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 190 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ R+ + E+A A ++ ++ E G + +I L I + Sbjct: 17 VGAQIRRRREQRGMSSAELARRAGLGKATLSQLEAGRGNPTIETLDALAIALRIPLTDLL 76 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + D V D L+ I Sbjct: 77 ARDT-DPGPVLVPGTDLADGEVGRELLRRI 105 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+GA+++ R+ +GMS E + G+ +TLS E GR P I+ + + L Sbjct: 15 IAVGAQIRRRREQRGMSSAELARRAGLGKATLSQLEAGRGNPTIETLDALAIALRIPLTD 74 Query: 172 IYFGDEVIVPKSI 184 + D P + Sbjct: 75 LLARDTDPGPVLV 87 >gi|313891199|ref|ZP_07824818.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120562|gb|EFR43682.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 359 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I R TQ++++ + ++ ++ +EN I Y + L +++S D + Sbjct: 2 IGDTIFLERTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILLAKLFDMSLDDLV 61 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 R GM+Q + L + +T+S +E + P+I + ++ LD + + + Sbjct: 10 RTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILLAKLFDMSLDDLVGFQKTLSD 69 Query: 182 KS 183 Sbjct: 70 SE 71 >gi|262066094|ref|ZP_06025706.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] gi|291380189|gb|EFE87707.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] Length = 184 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K R + +E+A S ++ E G S SI + + ++ ++ Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLI 62 Query: 92 DGEVIDRRYED 102 + E D R + Sbjct: 63 EDEEDDIRNIE 73 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R DKGMS E + + S LS EQG+ P I+ +KI + + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 172 IYFGDEV 178 + +E Sbjct: 61 LIEDEED 67 >gi|229096313|ref|ZP_04227286.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|229102426|ref|ZP_04233134.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|229115267|ref|ZP_04244677.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228668407|gb|EEL23839.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228681073|gb|EEL35242.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228687273|gb|EEL41178.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 181 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RK T K++A A S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKEKGLTSKQLANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEETNTDDLIVRSHKRKKM 84 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 34/83 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG++ + + + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKEKGLTSKQLANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 + ++ K + Sbjct: 61 TFSFLLEETNTDDLIVRSHKRKK 83 >gi|239625412|ref|ZP_04668443.1| dna-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239519642|gb|EEQ59508.1| dna-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 67 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I++ RK +Q+E+A VN EN ++ A +L E + D ++ Sbjct: 5 IRERRKERGISQEELAGKCGVSRQTVNAIENNKYDPTLALAFHLAQELGTTVDGLFK 61 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ RK++G+SQ E G+ T++ E + P + A + Q +D ++ Sbjct: 1 MENSIRERRKERGISQEELAGKCGVSRQTVNAIENNKYDPTLALAFHLAQELGTTVDGLF 60 Query: 174 F 174 Sbjct: 61 K 61 >gi|240948468|ref|ZP_04752844.1| transcription regulator [Actinobacillus minor NM305] gi|240297209|gb|EER47771.1| transcription regulator [Actinobacillus minor NM305] Length = 239 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI++ R+ ++ EMA + SA+ +E + + ++ +++ Sbjct: 11 IGNRIREQREKLGLSRNEMADRLDVSLSALQNWEMNEREPQASMIIKIAEFLGVAPNYLL 70 Query: 92 DGEVIDRRYED 102 GE + Sbjct: 71 TGEQSQPQEAK 81 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 +K + IG R++ R+ G+S+ E L + S L N+E P+ KI + Sbjct: 2 TEKFKNKSMIGNRIREQREKLGLSRNEMADRLDVSLSALQNWEMNEREPQASMIIKIAEF 61 Query: 165 TKKHLDWIYFGDEVIVPKS---IKRAKGNQSSKKSKKDK 200 +++ G++ ++ + RA +++++D+ Sbjct: 62 LGVAPNYLLTGEQSQPQEAKGIVARAFEALEKERTEQDE 100 >gi|220914053|ref|YP_002489362.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860931|gb|ACL41273.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 201 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 E + P + VG +++ +RK T ++ ++ V+ E GM + S Sbjct: 2 TTETSTTAPPATSELLATVGNKVRSMRKDRGMTLARLSEITGLSQAIVSQIERGMANPSF 61 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRY 100 L + +I + G+ R Sbjct: 62 TTLAQLAHGLDIPVGRFFIGQDQSRSP 88 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 36/84 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++S+RKD+GM+ ++ G+ + +S E+G P ++ + + G Sbjct: 22 NKVRSMRKDRGMTLARLSEITGLSQAIVSQIERGMANPSFTTLAQLAHGLDIPVGRFFIG 81 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + ++R+ +++ Sbjct: 82 QDQSRSPVVRRSARRNLQNVTRES 105 >gi|194466453|ref|ZP_03072440.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194453489|gb|EDX42386.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 220 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++K +RK+ TQ ++A + + ++ +E G + L + + + I Sbjct: 6 IASQLKRLRKSRGWTQTQLADKLSVSKQTISNWETGTKVPRMGSLQNLADLFHVKIGEI 64 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I ++LK +RK +G +Q + L + T+SN+E G +P + + + + Sbjct: 1 MVENTIASQLKRLRKSRGWTQTQLADKLSVSKQTISNWETGTKVPRMGSLQNLADLFHVK 60 Query: 169 LDWI 172 + I Sbjct: 61 IGEI 64 >gi|24378729|ref|NP_720684.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24376595|gb|AAN57990.1|AE014871_15 putative transcriptional regulator [Streptococcus mutans UA159] Length = 117 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 29/75 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R TQK++A + + +E+G + + ++ D++ Sbjct: 4 ERLKSLRLEAGLTQKQIAEKLEIKQQSYAQWESGRTKPRSATLNKFADFFGVTTDYLLGK 63 Query: 94 EVIDRRYEDVTNKKR 108 I + + ++ Sbjct: 64 TNIKKEIPEGEELEK 78 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLKS+R + G++Q + + L + + + +E GRT P K D++ Sbjct: 1 MFPERLKSLRLEAGLTQKQIAEKLEIKQQSYAQWESGRTKPRSATLNKFADFFGVTTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 G I + + + + ++ + Sbjct: 61 L-GKTNIKKEIPEGEELEKELDRAIDN 86 >gi|295108006|emb|CBL21959.1| transcriptional regulator, XRE family [Ruminococcus obeum A2-162] Length = 77 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ + TQK M N + + +E G + L + S D++ + Sbjct: 3 QRIRDLREDRDLTQKNMGEILNCSQRIYSNYECGDVDIPTHILIKLAEFHNTSVDYLLNL 62 Query: 94 EVIDRRYEDVTN 105 R Y N Sbjct: 63 TDDKRPYPRKKN 74 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D+ ++Q G++L SNYE G K+ + +D++ Sbjct: 1 MYQRIRDLREDRDLTQKNMGEILNCSQRIYSNYECGDVDIPTHILIKLAEFHNTSVDYLL 60 Query: 174 FGDEVIVPKSIKR 186 + P K+ Sbjct: 61 NLTDDKRPYPRKK 73 >gi|307727212|ref|YP_003910425.1| Cupin 2 conserved barrel domain-containing protein [Burkholderia sp. CCGE1003] gi|307587737|gb|ADN61134.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1003] Length = 190 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 38/102 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG++I+ +R+ +T E A A + ++ E G+ S SI + + ++ + Sbjct: 13 EVGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYF 72 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 D +R K + G Q+E Sbjct: 73 VDTPSEERSVSRGDQLKFFGFADSANLFARLTNVAGGRQLEA 114 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 2/83 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G++++++R+ + E G+ LS E+G P I I Sbjct: 6 HKSNTALEVGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHAL 65 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 + + D +S+ R Sbjct: 66 GVTVQYFV--DTPSEERSVSRGD 86 >gi|237743275|ref|ZP_04573756.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|256028631|ref|ZP_05442465.1| MerR family transcriptional regulator [Fusobacterium sp. D11] gi|289766549|ref|ZP_06525927.1| transcriptional regulator [Fusobacterium sp. D11] gi|229433054|gb|EEO43266.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|289718104|gb|EFD82116.1| transcriptional regulator [Fusobacterium sp. D11] Length = 184 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 32/82 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R + +E+A S ++ E G S SI + + ++ ++ Sbjct: 3 IGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + E D R + K + Sbjct: 63 EDEDDDIRNIEYIKKDSIKYIE 84 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+ R DKGMS E + + S LS EQG+ P I+ +KI + + Sbjct: 1 MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 172 IYFGDEV 178 + ++ Sbjct: 61 LLEDEDD 67 >gi|210634420|ref|ZP_03298108.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279] gi|210158823|gb|EEA89794.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279] Length = 351 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I+ R+ TQ+++A AVN +E G+C I L +E + + Sbjct: 3 ISEIIRSRRRELGMTQEQVAQRLGVSAPAVNKWERGICYPDITLIPSLARLFETDANTLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 E R E + ++ +D Sbjct: 63 SFEPELREEESLAIQREVDRLVREE 87 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 34/72 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++S R++ GM+Q + + LG+ ++ +E+G P+I + ++ + + Sbjct: 1 MHISEIIRSRRRELGMTQEQVAQRLGVSAPAVNKWERGICYPDITLIPSLARLFETDANT 60 Query: 172 IYFGDEVIVPKS 183 + + + + Sbjct: 61 LLSFEPELREEE 72 >gi|207721971|ref|YP_002252409.1| hypothetical protein RSMK02286 [Ralstonia solanacearum MolK2] gi|207744683|ref|YP_002261075.1| hypothetical protein RSIPO_02894 [Ralstonia solanacearum IPO1609] gi|206587144|emb|CAQ17728.1| hypothetical protein RSMK02286 [Ralstonia solanacearum MolK2] gi|206596090|emb|CAQ63017.1| hypothetical protein RSIPO_02894 [Ralstonia solanacearum IPO1609] Length = 113 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R A +K+Q+ +A A+ + ++ E G+ + S+ L ++ ++ Sbjct: 24 LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANLCYALNVTLAELF 83 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 R A LK R Sbjct: 84 ---GPLDGVSLQPTGTRRINAATPPDLKRNR 111 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+K R SQ + + +S+ E+G P ++ + L + Sbjct: 23 ALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANLCYALNVTLAEL 82 Query: 173 Y 173 + Sbjct: 83 F 83 >gi|83746365|ref|ZP_00943417.1| hypothetical protein RRSL_03958 [Ralstonia solanacearum UW551] gi|83726906|gb|EAP74032.1| hypothetical protein RRSL_03958 [Ralstonia solanacearum UW551] Length = 119 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R A +K+Q+ +A A+ + ++ E G+ + S+ L ++ ++ Sbjct: 30 LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANLCYALNVTLAELF 89 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 R A LK R Sbjct: 90 ---GPLDGVSLQPTGTRRINAATPPDLKRNR 117 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+K R SQ + + +S+ E+G P ++ + L + Sbjct: 29 ALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANLCYALNVTLAEL 88 Query: 173 Y 173 + Sbjct: 89 F 89 >gi|311899387|dbj|BAJ31795.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 188 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R++ +R N + + +A +S ++ E G+ SI AL + + ++ E Sbjct: 4 RLRALRTQNRLSLEALAAQVGVTKSYLSKVERGLSEPSISTALKIAEALGVEVGRLFSEE 63 Query: 95 VIDR 98 V Sbjct: 64 VEPE 67 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+++R +S +G+ S LS E+G + P I A KI + + ++ + Sbjct: 5 LRALRTQNRLSLEALAAQVGVTKSYLSKVERGLSEPSISTALKIAEALGVEVGRLFSEEV 64 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 65 EPELVTVVRA 74 >gi|293374084|ref|ZP_06620420.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325845732|ref|ZP_08169012.1| cupin domain protein [Turicibacter sp. HGF1] gi|292647291|gb|EFF65265.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325488246|gb|EGC90675.1| cupin domain protein [Turicibacter sp. HGF1] Length = 180 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 4/91 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R TQ+E+A + ++ E + S SI + + + + Sbjct: 3 IGEKIRRLRMELQLTQEELADRTELTKGYISQVERDLASPSIATLVDILEALGTTLGEFF 62 Query: 92 DGEVIDRRYEDVTNK----KRLDPYAIGARL 118 E D++ + LD + Sbjct: 63 AEEKNDQKVVFQREDVFIKEELDYNMTIRWI 93 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 27/77 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R + ++Q E + +S E+ P I I + L Sbjct: 1 MIIGEKIRRLRMELQLTQEELADRTELTKGYISQVERDLASPSIATLVDILEALGTTLGE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + ++ +R Sbjct: 61 FFAEEKNDQKVVFQRED 77 >gi|284006697|emb|CBA71956.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 237 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI+D RK TQ E+A +V +ENG L + +W+ Sbjct: 21 ISNRIRDRRKELRLTQNEIAKALGVSRVSVTKWENGDTKPDGENLHILTKVLACNIEWLL 80 Query: 92 DGEVIDRRYEDV 103 G+ + Sbjct: 81 YGKDSRSEDDTK 92 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 43/84 (51%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +I R++ RK+ ++Q E K LG+ +++ +E G T P+ + + +V +++W+ Sbjct: 20 SISNRIRDRRKELRLTQNEIAKALGVSRVSVTKWENGDTKPDGENLHILTKVLACNIEWL 79 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKS 196 +G + K + + ++ K Sbjct: 80 LYGKDSRSEDDTKLYRLSSATFKR 103 >gi|238922270|ref|YP_002935784.1| hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC 27750] gi|238873942|gb|ACR73650.1| Hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC 27750] Length = 115 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +V RI+++R+ + TQ ++ + ++ +E G S+ + L + + S D Sbjct: 1 MHEVHNRIRELREEKHITQIRLSTELGVAQETISAYEQGRHMPSVSTLIKLSSILDASMD 60 Query: 89 WIY 91 +I Sbjct: 61 YIM 63 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 41/82 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + + R++ +R++K ++QI LG+ T+S YEQGR +P + K+ + +D Sbjct: 1 MHEVHNRIRELREEKHITQIRLSTELGVAQETISAYEQGRHMPSVSTLIKLSSILDASMD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQS 192 +I + ++ +++ Sbjct: 61 YIMMKSDTRNIIEVQSLSDSET 82 >gi|218895211|ref|YP_002443622.1| DNA-binding protein [Bacillus cereus G9842] gi|228898828|ref|ZP_04063111.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 4222] gi|228905871|ref|ZP_04069769.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 200] gi|228937377|ref|ZP_04100024.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228963175|ref|ZP_04124345.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|218540820|gb|ACK93214.1| DNA-binding protein [Bacillus cereus G9842] gi|228796560|gb|EEM43998.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228822335|gb|EEM68316.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853811|gb|EEM98570.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 200] gi|228860853|gb|EEN05230.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 4222] gi|326937867|gb|AEA13763.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 67 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S S + + + +S D + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIDELMP 66 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ RK KG +Q F K LG+ S L E+G P ++ + +D + Sbjct: 8 RRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIDELM 65 >gi|111026104|ref|YP_708387.1| repressor protein [Rhodococcus jostii RHA1] gi|110824947|gb|ABH00229.1| probable repressor protein [Rhodococcus jostii RHA1] Length = 200 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 18/130 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++D R T+ +++ + ++ +E + + I D + Sbjct: 67 LEDARTTAGITRGDLSRAIGVDPTTIHNWETSRTHPQPDHLARAAEKLGIPLDRLVVVPE 126 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 R + +R G++Q G+ +T+ E+G Sbjct: 127 DSRT------------------IADLRNLAGLTQKHVANRTGLSTTTIGRIERGEGSLSD 168 Query: 156 KPARKIKQVT 165 + A + + Sbjct: 169 RHATALAEAL 178 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R G+++ + + +G+ +T+ N+E RT P+ + + LD + Sbjct: 64 PQALEDARTTAGITRGDLSRAIGVDPTTIHNWETSRTHPQPDHLARAAEKLGIPLDRLV 122 >gi|309807458|ref|ZP_07701419.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] gi|308169278|gb|EFO71335.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] Length = 210 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++ R + TQ+E+A +AV +E G + + + ++ D++ Sbjct: 3 LGEKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLL 62 Query: 92 DGEV 95 D + Sbjct: 63 DKDN 66 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 36/71 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++++ R + ++Q E +++ + + ++ +E GR +P++ + I +D++ Sbjct: 5 EKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLLDK 64 Query: 176 DEVIVPKSIKR 186 D I IK+ Sbjct: 65 DNAIDLSIIKK 75 >gi|239636398|ref|ZP_04677400.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] gi|239597753|gb|EEQ80248.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] Length = 179 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K++RK N TQ+E+A + + ++ E+ S S+ L + S Sbjct: 2 EIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + D Y G L + Sbjct: 62 FKETEQQKVIYKKEEQVIYDEYDRGYILNWL 92 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 29/77 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK++RK K ++Q E + + +S E P ++ I +V Sbjct: 1 MEIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASD 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + E K + Sbjct: 61 FFKETEQQKVIYKKEEQ 77 >gi|237733222|ref|ZP_04563703.1| predicted protein [Mollicutes bacterium D7] gi|229383766|gb|EEO33857.1| predicted protein [Coprobacillus sp. D7] Length = 189 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +I ++RK Q+E+ S ++ +E+ I L + +E+S D++ Sbjct: 4 GEKIHELRKNKGLLQEELGTLIGVDTSVISRWESSQRQIKIEDLTKLSDLFEVSVDYL 61 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++ +RK+KG+ Q E G L+G+ S +S +E + +I+ K+ + + +D+ Sbjct: 1 MNTGEKIHELRKNKGLLQEELGTLIGVDTSVISRWESSQRQIKIEDLTKLSDLFEVSVDY 60 Query: 172 I-----YFGDEVIVPKSIKRAKGNQSSKKSKK 198 + ++ + + + K Q+ + KK Sbjct: 61 LAKDNVFYSANIPLIGYFEEGKSLQTHIEKKK 92 >gi|229029542|ref|ZP_04185622.1| hypothetical protein bcere0028_16320 [Bacillus cereus AH1271] gi|228731741|gb|EEL82643.1| hypothetical protein bcere0028_16320 [Bacillus cereus AH1271] Length = 95 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +E+ I + L Y ++ ++ Sbjct: 21 LGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSEMYNVT--YMI 78 Query: 92 DGEVI 96 E Sbjct: 79 KSEKN 83 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 N K D ++G +LK +R+ KG SQ + K +G+ + +E ++ P+I + + Sbjct: 11 KNFKPGDVMSLGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSE 70 Query: 164 VTKKH 168 + Sbjct: 71 MYNVT 75 >gi|197303199|ref|ZP_03168241.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC 29176] gi|197297739|gb|EDY32297.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC 29176] Length = 108 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RIK R + TQ++ A + ++ E G+ S+ + + + + D Sbjct: 5 YKTLGDRIKTKRISQGITQEKFAEHMDVSVGYISQLERGISKVSLERLVSISEYFNCNID 64 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + DG + + + + L Sbjct: 65 FFIDGINSNTEHYLAQDFEEL 85 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 41/94 (43%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +G R+K+ R +G++Q +F + + + +S E+G + ++ I + Sbjct: 1 MAINYKTLGDRIKTKRISQGITQEKFAEHMDVSVGYISQLERGISKVSLERLVSISEYFN 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++D+ G + + ++ S +K Sbjct: 61 CNIDFFIDGINSNTEHYLAQDFEELYAQLSSHEK 94 >gi|14210845|gb|AAK57192.1|AF319998_11 putative transcriptional repressor [Stigmatella aurantiaca] Length = 119 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 6/112 (5%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G+ +D R TQ E+A + E G S+ L + I Sbjct: 3 EELASQIGSAARDARTHLGLTQAEVAEKLGIAHMVYSRLERGKMLPSVPTLLRMCAVLHI 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 S D + +R + A + +R+ G+++ + L Sbjct: 63 SADDLLGVSGEERGARLARGPR------GEAEVPRVRQLLGLARKMDEEKLD 108 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY--FGD 176 + R G++Q E + LG+ + S E+G+ +P + ++ V D + G+ Sbjct: 14 RDARTHLGLTQAEVAEKLGIAHMVYSRLERGKMLPSVPTLLRMCAVLHISADDLLGVSGE 73 Query: 177 E 177 E Sbjct: 74 E 74 >gi|15895220|ref|NP_348569.1| phage related transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024927|gb|AAK79909.1|AE007699_19 Phage related transcriptional regulator (Xre family) [Clostridium acetobutylicum ATCC 824] gi|325509365|gb|ADZ21001.1| Phage related transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 123 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +RK TQ+++A S ++ E G + SI L N + ++ D + Sbjct: 2 LGENLKKLRKEKGLTQRQLAGETGLSVSIISKLEEGKKTGSIETLQTLSNYFNVTVDELS 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + ++ + L + Sbjct: 62 ENKSANIDKKEYAVDELLKRLVKKGLI 88 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G LK +RK+KG++Q + G+ S +S E+G+ I+ + + +D + Sbjct: 1 MLGENLKKLRKEKGLTQRQLAGETGLSVSIISKLEEGKKTGSIETLQTLSNYFNVTVDEL 60 >gi|312961080|ref|ZP_07775585.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6] gi|311284738|gb|EFQ63314.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6] Length = 113 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I R N TQ+E+A A++ E G+ S+ + L + ++ D + Sbjct: 10 QIGRMIAKHRTERNLTQEEVAERLGIGSEAISRLERGVVELSVVKLMQLADIFDCRMDEL 69 Query: 91 YDGEVIDRRYEDV 103 + Sbjct: 70 LTESSNRPNDQGQ 82 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K IG + R ++ ++Q E + LG+ + +S E+G + ++ + Sbjct: 3 HKHPTQAQIGRMIAKHRTERNLTQEEVAERLGIGSEAISRLERGVVELSVVKLMQLADIF 62 Query: 166 KKHLDWIYFG 175 +D + Sbjct: 63 DCRMDELLTE 72 >gi|304439390|ref|ZP_07399302.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372172|gb|EFM25766.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 67 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK+ R N+ +Q+++A + ENG + S+ A + + ++ + I+ Sbjct: 2 ISNRIKEFRARNSMSQEDLANAVGVRRETIGNLENGRYNPSLVLAWNIAKVFGVTIEEIF 61 Query: 92 DGEVID 97 D Sbjct: 62 TIYNDD 67 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R+K R MSQ + +G+ T+ N E GR P + A I +V ++ I Sbjct: 1 MISNRIKEFRARNSMSQEDLANAVGVRRETIGNLENGRYNPSLVLAWNIAKVFGVTIEEI 60 Query: 173 YF 174 + Sbjct: 61 FT 62 >gi|291550061|emb|CBL26323.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 66 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 33/58 (56%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I+++R+ N+KTQKE+A N ++ + +E G + I + L + Y +S D++ Sbjct: 4 ENIRNLREDNDKTQKEVAAYLNIKQTTYSKYELGKINVPIDVFIKLADYYTVSIDYLV 61 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++++R+D +Q E L + +T S YE G+ I K+ +D++ Sbjct: 1 MRFENIRNLREDNDKTQKEVAAYLNIKQTTYSKYELGKINVPIDVFIKLADYYTVSIDYL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|291530057|emb|CBK95642.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 79 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + V R+++IRK Q+E+A + ENG + SI A L + +S Sbjct: 8 ERRRTVKNRLEEIRKERGIKQEELAAALEVSRQTIGSLENGRYNPSIILAFKLARYFNMS 67 Query: 87 FDWIYDGEV 95 + I+ E Sbjct: 68 IEDIFIYEE 76 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+ IRK++G+ Q E L + T+ + E GR P I A K+ + ++ I+ Sbjct: 14 KNRLEEIRKERGIKQEELAAALEVSRQTIGSLENGRYNPSIILAFKLARYFNMSIEDIFI 73 Query: 175 GDE 177 +E Sbjct: 74 YEE 76 >gi|317131912|ref|YP_004091226.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469891|gb|ADU26495.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 73 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+++R+ + TQ +MA N ++ + +E G + I + + + ++ S D++ Sbjct: 3 ERIRNMREDRDLTQTQMASYLNIHQTTYSDYEIGNLNIPIPVLMKIADLFDTSVDYLVGR 62 Query: 94 EVIDRRYED 102 +RY Sbjct: 63 TDERQRYPK 71 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++++R+D+ ++Q + L + +T S+YE G I KI + +D++ Sbjct: 1 MFERIRNMREDRDLTQTQMASYLNIHQTTYSDYEIGNLNIPIPVLMKIADLFDTSVDYLV 60 >gi|262402969|ref|ZP_06079529.1| predicted transcriptional regulator [Vibrio sp. RC586] gi|262350468|gb|EEY99601.1| predicted transcriptional regulator [Vibrio sp. RC586] Length = 237 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI+ +RK TQ+++A +++ +E + + L + + Sbjct: 3 RETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVDPL 62 Query: 89 WIYDGE 94 W+ G+ Sbjct: 63 WLQTGK 68 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG R++ +RK+ ++Q + +G+ ++L +E+ T P+ + + + Sbjct: 1 MTRETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVD 60 Query: 169 LDWIYFGD 176 W+ G Sbjct: 61 PLWLQTGK 68 >gi|198283913|ref|YP_002220234.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666348|ref|YP_002426547.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248434|gb|ACH84027.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518561|gb|ACK79147.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 181 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + V +I+ +R+ + + +A A SA++ E G S SI + +I Sbjct: 1 MEQVCKKIRQLREDRGWSVRGLAARAEISPSALSQIEAGQNSPSIATLEKICAALQIPIA 60 Query: 89 WIY-DGEVIDRRYEDVTNKKRLDPYA-IGARLKSIRKDKGMSQIEF 132 I+ DGE + + +R A A L+ + +G+ Q + Sbjct: 61 AIFDDGETAGLPWIMRSGDRRKFYSAGSHASLEPL--ARGLPQKKM 104 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R+D+G S + S LS E G+ P I KI + + I+ Sbjct: 6 KKIRQLREDRGWSVRGLAARAEISPSALSQIEAGQNSPSIATLEKICAALQIPIAAIFDD 65 Query: 176 DEV 178 E Sbjct: 66 GET 68 >gi|168187848|ref|ZP_02622483.1| transcriptional regulator, MerR family [Clostridium botulinum C str. Eklund] gi|169294305|gb|EDS76438.1| transcriptional regulator, MerR family [Clostridium botulinum C str. Eklund] Length = 155 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 34/79 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK RK TQ+E+A + ++ +E +I + +++ + + Sbjct: 2 NLGEKIKKYRKLFKLTQEELAAKLEISKHTLSKYEQNQRKPNIEMLNKIAKALDVTVNDL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + E + + + + L Sbjct: 62 MEFEELKKEVTSIEETENL 80 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K RK ++Q E L + TLS YEQ + P I+ KI + ++ Sbjct: 1 MNLGEKIKKYRKLFKLTQEELAAKLEISKHTLSKYEQNQRKPNIEMLNKIAKALDVTVND 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + +E+ + N Sbjct: 61 LMEFEELKKEVTSIEETEN 79 >gi|254254772|ref|ZP_04948089.1| hypothetical protein BDAG_04090 [Burkholderia dolosa AUO158] gi|124899417|gb|EAY71260.1| hypothetical protein BDAG_04090 [Burkholderia dolosa AUO158] Length = 199 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L + + ++ Sbjct: 23 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALGVDVEQLF 79 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + G+ S LS E+G ++P I A K+ + ++ ++ Sbjct: 24 LKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALGVDVEQLFSEGR 83 Query: 178 VIVPKSIKRAKGN 190 +I RA Sbjct: 84 DRELIAITRADER 96 >gi|147921238|ref|YP_684949.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] gi|110620345|emb|CAJ35623.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] Length = 68 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK +R M+Q + + +G+ T+ E+ + P + A ++ + ++ I+ Sbjct: 1 MINHLKELRARHNMTQEDLAQKVGVSRQTIVAIEKQKYDPSLSLAFRLARCFGVKIEDIF 60 Query: 174 FGD 176 D Sbjct: 61 EED 63 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K++R +N TQ+++A + E S+ A L + + + I++ Sbjct: 3 NHLKELRARHNMTQEDLAQKVGVSRQTIVAIEKQKYDPSLSLAFRLARCFGVKIEDIFEE 62 Query: 94 EVIDRR 99 + + Sbjct: 63 DTDVQN 68 >gi|91783258|ref|YP_558464.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687212|gb|ABE30412.1| Putative transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 106 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 8/100 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R+ +Q ++A ++ E G + Y++S +WI Sbjct: 3 IAERLKEAREIAGLSQGQVAKRLGMHRPTISEIEAGRRKVAADELDLFAELYDVSVEWIV 62 Query: 92 DGEVID--------RRYEDVTNKKRLDPYAIGARLKSIRK 123 +G V D +++ D + L+ +RK Sbjct: 63 NGSVKDEAADARMLMAARELSKMSDQDLDRLMNMLRMLRK 102 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I RLK R+ G+SQ + K LGM T+S E GR ++ ++W Sbjct: 1 MSIAERLKEAREIAGLSQGQVAKRLGMHRPTISEIEAGRRKVAADELDLFAELYDVSVEW 60 Query: 172 IYFG---DEVIVPKSIKRAKGNQSSKKSKKD 199 I G DE + + A+ + SK S +D Sbjct: 61 IVNGSVKDEAADARMLMAAR--ELSKMSDQD 89 >gi|32141280|ref|NP_733681.1| UDP-N-acetylglucosamine transferase [Streptomyces coelicolor A3(2)] gi|256784482|ref|ZP_05522913.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] gi|289768363|ref|ZP_06527741.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] gi|24429550|emb|CAD55243.1| putative UDP-N-acetylglucosamine transferase [Streptomyces coelicolor A3(2)] gi|289698562|gb|EFD65991.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] Length = 509 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A N +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGRLIRDARQHRGWTQSQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + L S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQSQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|327441857|dbj|BAK18222.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 368 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 + RK TQ+E+A +AV+ +E G I L + IS D + E Sbjct: 12 ERRKQLQVTQEEIARHVGVSRAAVSKWEKGQSYPDIALLPKLATFFNISIDALLGYEPQ 70 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 40/90 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + A RK ++Q E + +G+ + +S +E+G++ P+I K+ Sbjct: 1 MTNFQFAAIFTERRKQLQVTQEEIARHVGVSRAAVSKWEKGQSYPDIALLPKLATFFNIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 +D + + + + I + + + SK+ Sbjct: 61 IDALLGYEPQLTNERILKMYAELAKRFSKE 90 >gi|317484534|ref|ZP_07943442.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924195|gb|EFV45373.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 184 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 4/78 (5%) Query: 29 WKDVG----TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++G +K +R+ + +A + +S + E G+ + +I + N + Sbjct: 1 MENIGHIVAENLKRLREERKLSLDAVAKCSGVSKSMLGQIERGVTNPTISTLWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYED 102 ISF + D Sbjct: 61 ISFTSLMMRPETDVEVVP 78 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 28/72 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +R+++ +S K G+ S L E+G T P I KI K + Sbjct: 10 ENLKRLREERKLSLDAVAKCSGVSKSMLGQIERGVTNPTISTLWKIANGLKISFTSLMMR 69 Query: 176 DEVIVPKSIKRA 187 E V + A Sbjct: 70 PETDVEVVPRSA 81 >gi|256114435|ref|ZP_05455150.1| hypothetical protein Bmelb3E_16432 [Brucella melitensis bv. 3 str. Ether] Length = 650 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + +RK T +A ++ +A++ ENG + + L N I F + Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGEL 65 Query: 91 Y-DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL--LGMP 139 ++ D + + +D +++ D + G+ Sbjct: 66 VGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVS 117 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK +G++ +L + + +S E G P ++ + + Sbjct: 9 MNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66 >gi|228969395|ref|ZP_04130242.1| hypothetical protein bthur0004_60930 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790357|gb|EEM38097.1| hypothetical protein bthur0004_60930 [Bacillus thuringiensis serovar sotto str. T04001] Length = 108 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 28/79 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ ++RK TQ ++A N + +E G + L Y +S D ++ Sbjct: 4 LSKRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKADPDADSIMNLAEIYNVSIDELF 63 Query: 92 DGEVIDRRYEDVTNKKRLD 110 ++ D Sbjct: 64 GRNAPLESKLELIKVAISD 82 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 33/72 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK +G +Q + L + +T +N+E G+ P+ + ++ +D Sbjct: 1 MSHLSKRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKADPDADSIMNLAEIYNVSID 60 Query: 171 WIYFGDEVIVPK 182 ++ + + K Sbjct: 61 ELFGRNAPLESK 72 >gi|225628403|ref|ZP_03786437.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo] gi|237816216|ref|ZP_04595211.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] gi|225616249|gb|EEH13297.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo] gi|237788678|gb|EEP62891.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] Length = 652 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + +RK T +A ++ +A++ ENG + + L N I F + Sbjct: 8 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGEL 67 Query: 91 Y-DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL--LGMP 139 ++ D + + +D +++ D + G+ Sbjct: 68 VGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVS 119 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK +G++ +L + + +S E G P ++ + + Sbjct: 11 MNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 68 >gi|218235129|ref|YP_002366064.1| transcriptional regulator SinR [Bacillus cereus B4264] gi|228938496|ref|ZP_04101105.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971375|ref|ZP_04132001.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977987|ref|ZP_04138367.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis Bt407] gi|229108836|ref|ZP_04238441.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-15] gi|229149581|ref|ZP_04277813.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550] gi|218163086|gb|ACK63078.1| transcriptional regulator SinR [Bacillus cereus B4264] gi|228633927|gb|EEK90524.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550] gi|228674605|gb|EEL29844.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-15] gi|228781775|gb|EEM29973.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis Bt407] gi|228788242|gb|EEM36195.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821233|gb|EEM67249.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939004|gb|AEA14900.1| SinR protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 107 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQ 129 E D + ++ + + + Q Sbjct: 62 LHDETTKETNLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQ 104 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|161619771|ref|YP_001593658.1| hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365] gi|163845428|ref|YP_001623083.1| hypothetical protein BSUIS_B1330 [Brucella suis ATCC 23445] gi|254703616|ref|ZP_05165444.1| hypothetical protein Bsuib36_06776 [Brucella suis bv. 3 str. 686] gi|260568922|ref|ZP_05839390.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|161336582|gb|ABX62887.1| Hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365] gi|163676151|gb|ABY40261.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|260154306|gb|EEW89388.1| transcriptional regulator [Brucella suis bv. 4 str. 40] Length = 650 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + +RK T +A ++ +A++ ENG + + L N I F + Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGEL 65 Query: 91 Y-DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL--LGMP 139 ++ D + + +D +++ D + G+ Sbjct: 66 VGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVS 117 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK +G++ +L + + +S E G P ++ + + Sbjct: 9 MNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66 >gi|16973422|gb|AAL32284.1|AF118548_4 hypothetical protein [Brucella abortus] Length = 650 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + +RK T +A ++ +A++ ENG + + L N I F + Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGEL 65 Query: 91 Y-DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL--LGMP 139 ++ D + + +D +++ D + G+ Sbjct: 66 VGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVS 117 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK +G++ +L + + +S E G P ++ + + Sbjct: 9 MNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66 >gi|62290714|ref|YP_222507.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|189024928|ref|YP_001935696.1| Cro/CI family transcriptional regulator [Brucella abortus S19] gi|225853293|ref|YP_002733526.1| hypothetical protein BMEA_A1902 [Brucella melitensis ATCC 23457] gi|254690004|ref|ZP_05153258.1| hypothetical protein Babob68_07506 [Brucella abortus bv. 6 str. 870] gi|254694495|ref|ZP_05156323.1| hypothetical protein Babob3T_07514 [Brucella abortus bv. 3 str. Tulya] gi|254698155|ref|ZP_05159983.1| hypothetical protein Babob28_10710 [Brucella abortus bv. 2 str. 86/8/59] gi|254700494|ref|ZP_05162322.1| hypothetical protein Bsuib55_06531 [Brucella suis bv. 5 str. 513] gi|254708298|ref|ZP_05170126.1| hypothetical protein BpinM_15413 [Brucella pinnipedialis M163/99/10] gi|254708850|ref|ZP_05170661.1| hypothetical protein BpinB_01038 [Brucella pinnipedialis B2/94] gi|254714691|ref|ZP_05176502.1| hypothetical protein BcetM6_15404 [Brucella ceti M644/93/1] gi|254717589|ref|ZP_05179400.1| hypothetical protein BcetM_14533 [Brucella ceti M13/05/1] gi|254731038|ref|ZP_05189616.1| hypothetical protein Babob42_07546 [Brucella abortus bv. 4 str. 292] gi|256030376|ref|ZP_05443990.1| hypothetical protein BpinM2_06958 [Brucella pinnipedialis M292/94/1] gi|256045452|ref|ZP_05448343.1| hypothetical protein Bmelb1R_13219 [Brucella melitensis bv. 1 str. Rev.1] gi|256061874|ref|ZP_05452007.1| hypothetical protein Bneo5_16155 [Brucella neotomae 5K33] gi|256160551|ref|ZP_05458237.1| hypothetical protein BcetM4_16231 [Brucella ceti M490/95/1] gi|256255754|ref|ZP_05461290.1| hypothetical protein BcetB_16060 [Brucella ceti B1/94] gi|256258259|ref|ZP_05463795.1| hypothetical protein Babob9C_13113 [Brucella abortus bv. 9 str. C68] gi|256263214|ref|ZP_05465746.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9] gi|260547047|ref|ZP_05822785.1| transcriptional regulator [Brucella abortus NCTC 8038] gi|260755540|ref|ZP_05867888.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260758763|ref|ZP_05871111.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260762597|ref|ZP_05874934.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|261214811|ref|ZP_05929092.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261757497|ref|ZP_06001206.1| transcriptional regulator [Brucella sp. F5/99] gi|297249109|ref|ZP_06932817.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str. B3196] gi|62196846|gb|AAX75146.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1 str. 9-941] gi|189020500|gb|ACD73222.1| transcriptional regulator, Cro/CI family [Brucella abortus S19] gi|225641658|gb|ACO01572.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260095412|gb|EEW79290.1| transcriptional regulator [Brucella abortus NCTC 8038] gi|260669081|gb|EEX56021.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260673023|gb|EEX59844.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675648|gb|EEX62469.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260916418|gb|EEX83279.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261737481|gb|EEY25477.1| transcriptional regulator [Brucella sp. F5/99] gi|263093166|gb|EEZ17272.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9] gi|297174242|gb|EFH33599.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str. B3196] Length = 650 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + +RK T +A ++ +A++ ENG + + L N I F + Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGEL 65 Query: 91 Y-DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL--LGMP 139 ++ D + + +D +++ D + G+ Sbjct: 66 VGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVS 117 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK +G++ +L + + +S E G P ++ + + Sbjct: 9 MNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66 >gi|317504070|ref|ZP_07962073.1| DNA-binding protein [Prevotella salivae DSM 15606] gi|315664812|gb|EFV04476.1| DNA-binding protein [Prevotella salivae DSM 15606] Length = 184 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 29/80 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R++ +R + +E+A E G S+ + Y Sbjct: 1 MEESIKQIGERLRGLRDVLDIPAEEVAELCGITLEHYLKIEAGEADPSVYRLSKISKRYG 60 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 IS D + GE +T Sbjct: 61 ISLDVLLFGEEPRMSSYYLT 80 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R + E +L G+ E G P + KI + LD + FG Sbjct: 10 ERLRGLRDVLDIPAEEVAELCGITLEHYLKIEAGEADPSVYRLSKISKRYGISLDVLLFG 69 Query: 176 DEVIVPKS--IKRAKGNQSSKKSKKDKKS 202 +E + + +G + + K ++ Sbjct: 70 EEPRMSSYYLTRDGQGQEIDRGDKYQYQT 98 >gi|295401476|ref|ZP_06811446.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294976526|gb|EFG52134.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 179 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++ +I+D+RK + T KE++ S ++ E G S +I + + E+ Sbjct: 1 MEEIYKKIRDLRKQRDLTLKELSEKTGLSISFLSQVERGSTSLAITSLKKIADALEVPIT 60 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 ++ E + N+K Sbjct: 61 DFFENEENKNFVVKLENQKPF 81 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +++ +RK + ++ E + G+ S LS E+G T I +KI + + Sbjct: 1 MEEIYKKIRDLRKQRDLTLKELSEKTGLSISFLSQVERGSTSLAITSLKKIADALEVPIT 60 Query: 171 WIYFGDE 177 + +E Sbjct: 61 DFFENEE 67 >gi|291543302|emb|CBL16411.1| Helix-turn-helix [Ruminococcus sp. 18P13] Length = 121 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 7/111 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G RI+D+R N +Q E+A A ++ ENG + +Y+ ++S D Sbjct: 9 YKAIGARIRDVRLQRNMSQAELAEKAFISVPHMSEVENGKTKLRLSTFVYITEALQVSAD 68 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL-------KSIRKDKGMSQIEF 132 + + L A + K ++ M + E+ Sbjct: 69 VLLRTNTPEVNGIYQGEFNDLLADCSPAEIDSIIKIVKELKTTMRMKKDEY 119 Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 AIGAR++ +R + MSQ E + + +S E G+T + I + + D Sbjct: 9 YKAIGARIRDVRLQRNMSQAELAEKAFISVPHMSEVENGKTKLRLSTFVYITEALQVSAD 68 Query: 171 WIY 173 + Sbjct: 69 VLL 71 >gi|229829910|ref|ZP_04455979.1| hypothetical protein GCWU000342_02016 [Shuttleworthia satelles DSM 14600] gi|229791208|gb|EEP27322.1| hypothetical protein GCWU000342_02016 [Shuttleworthia satelles DSM 14600] Length = 367 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I RK N TQ+E+A +++V+ +E G I L + ++ D + Sbjct: 3 KIAENIYQRRKEKNITQEELADFMMVTKASVSKWETGQSYPDILLLPKLATFFNVTVDEL 62 Query: 91 YDGEVI 96 E Sbjct: 63 IGYEPQ 68 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 39/87 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I + RK+K ++Q E + + +++S +E G++ P+I K+ +D Sbjct: 1 MLKIAENIYQRRKEKNITQEELADFMMVTKASVSKWETGQSYPDILLLPKLATFFNVTVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + + + + IK+ + S +K Sbjct: 61 ELIGYEPQLSLEQIKKIYEDFSKDITK 87 >gi|218283651|ref|ZP_03489613.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989] gi|218215711|gb|EEC89249.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989] Length = 145 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 38/78 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++GTR+K +R +Q++ ++AV+ ENG S S L + ++ ++ +W+ Sbjct: 22 EIGTRVKKVRLRKGISQEQFGEIIGIKKAAVSKIENGENSLSKGNLLAICRQFNVNKEWL 81 Query: 91 YDGEVIDRRYEDVTNKKR 108 +G + ++ R Sbjct: 82 INGNGEMFTPKSKEDEIR 99 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD- 176 +K +R KG+SQ +FG+++G+ + +S E G I + + +W+ G+ Sbjct: 27 VKKVRLRKGISQEQFGEIIGIKKAAVSKIENGENSLSKGNLLAICRQFNVNKEWLINGNG 86 Query: 177 EVIVPKSIKRAKGN 190 E+ PKS + N Sbjct: 87 EMFTPKSKEDEIRN 100 >gi|114800333|ref|YP_761750.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740507|gb|ABI78632.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 75 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+++R+++ +Q +A V E G S S+ A + +++ + + Sbjct: 7 ITNRIRELRESHGAMSQAALAEAIGVTRQTVIAIELGKYSPSLESAFRIARVFDLGIEDV 66 Query: 91 YDGEVID 97 + + Sbjct: 67 FGWQPPP 73 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++ +R+ G MSQ + +G+ T+ E G+ P ++ A +I +V ++ + Sbjct: 7 ITNRIRELRESHGAMSQAALAEAIGVTRQTVIAIELGKYSPSLESAFRIARVFDLGIEDV 66 Query: 173 Y 173 + Sbjct: 67 F 67 >gi|317472617|ref|ZP_07931934.1| hypothetical protein HMPREF1011_02284 [Anaerostipes sp. 3_2_56FAA] gi|316899903|gb|EFV21900.1| hypothetical protein HMPREF1011_02284 [Anaerostipes sp. 3_2_56FAA] Length = 369 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + RK TQ ++A +++V+ +E G I + L + +S D + Sbjct: 5 NLSNILVKKRKEKGITQDQLAAYIGVSKASVSKWETGQSYPDITFLPQLAAYFNMSVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + + + RL K Sbjct: 65 IGYKPQMTKEDIRKLYLRLAKDFSQKPAKE 94 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 42/94 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + L RK+KG++Q + +G+ +++S +E G++ P+I ++ Sbjct: 1 MKELNLSNILVKKRKEKGITQDQLAAYIGVSKASVSKWETGQSYPDITFLPQLAAYFNMS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 +D + + + I++ + S+K K Sbjct: 61 VDELIGYKPQMTKEDIRKLYLRLAKDFSQKPAKE 94 >gi|218134626|ref|ZP_03463430.1| hypothetical protein BACPEC_02529 [Bacteroides pectinophilus ATCC 43243] gi|217990011|gb|EEC56022.1| hypothetical protein BACPEC_02529 [Bacteroides pectinophilus ATCC 43243] Length = 107 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK++R A T++++A A+ E G+ I + + + I+ D++ Sbjct: 9 GERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHITLDYLVC 68 Query: 93 G 93 G Sbjct: 69 G 69 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 D G R+K +R + M++ + + +G+ L E G +I I ++ Sbjct: 1 MYYDIVNSGERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFH 60 Query: 167 KHLDWIYFGDE 177 LD++ G E Sbjct: 61 ITLDYLVCGCE 71 >gi|223939954|ref|ZP_03631821.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223891368|gb|EEF57862.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 203 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 1/98 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +A + S ++ E + ++ A + + +S + + Sbjct: 28 RRLKQLRAERGWSLDSLANASGVSRSMISQVERNQANPTLAVAFRIARAFGMSLAELVET 87 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 + Y IR + + Sbjct: 88 PEAMSSVLVIRASDHEYHYRSDND-CQIRTLSPLHLEK 124 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R ++G S G+ S +S E+ + P + A +I + L + Sbjct: 28 RRLKQLRAERGWSLDSLANASGVSRSMISQVERNQANPTLAVAFRIARAFGMSLAELVET 87 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 E + + RA ++ +S D Sbjct: 88 PEAMSSVLVIRASDHEYHYRSDND 111 >gi|108805301|ref|YP_645238.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766544|gb|ABG05426.1| transcriptional regulator, XRE family with cupin sensor [Rubrobacter xylanophilus DSM 9941] Length = 220 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R T +++ A+ +S ++ ENG S S+ L ++ ++ Sbjct: 28 LGNFIRKYRLEKGLTLSDISARASISKSMLSKIENGQASPSLHTIARLAQALGVTLSTMF 87 Query: 92 DGEVIDRRYEDVTN 105 I + Sbjct: 88 SNYDIPSDNAQLVK 101 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 2/107 (1%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + N + +G ++ R +KG++ + + S LS E G+ P + Sbjct: 12 KNDNRRANTRLNPDQYLGNFIRKYRLEKGLTLSDISARASISKSMLSKIENGQASPSLHT 71 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVP--KSIKRAKGNQSSKKSKKDKKS 202 ++ Q L ++ ++ + +K KG + ++ ++ + Sbjct: 72 IARLAQALGVTLSTMFSNYDIPSDNAQLVKAGKGMEVVRRGTREGHT 118 >gi|229528221|ref|ZP_04417612.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)] gi|261212926|ref|ZP_05927210.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|297580070|ref|ZP_06941997.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385] gi|229334583|gb|EEO00069.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)] gi|260837991|gb|EEX64668.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|297535716|gb|EFH74550.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385] Length = 237 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI+ +RK TQ+++A +++ +E + + L + + Sbjct: 3 RETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVDPL 62 Query: 89 WIYDGE 94 W+ G+ Sbjct: 63 WLQTGK 68 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG R++ +RK+ ++Q + +G+ ++L +E+ T P+ + + + Sbjct: 1 MTRETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVD 60 Query: 169 LDWIYFGD 176 W+ G Sbjct: 61 PLWLQTGK 68 >gi|331018707|gb|EGH98763.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 118 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 35/77 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ RKA+ Q ++A + ++ +E G+ + ++ + + L +IS + Sbjct: 8 IGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 67 Query: 92 DGEVIDRRYEDVTNKKR 108 + I E + + Sbjct: 68 PADGISSSREHLPKLRD 84 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +++ RK G +Q + +L+G T+S YE+G P + K+ K + D Sbjct: 12 VRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELLPADG 71 Query: 178 VIVPKSIKRAKGNQSSKK 195 + + +++ KK Sbjct: 72 ISSSREHLPKLRDEAVKK 89 >gi|313904604|ref|ZP_07837979.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470574|gb|EFR65901.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 114 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++K +R TQ ++A V+ ENG + S++ Y N +S D + Sbjct: 12 DLGPKVKLLRLQQGLTQNKVAKELGVTPGYVSNVENGRTAMSLKVLCYYANLVGLSVDSL 71 Query: 91 YDGEVIDRRYEDVTNK-----KRLDPYAIGARLKSIRKD 124 + R + ++ + ++ L++IR Sbjct: 72 VGKIEPEYRSVALDHELQFMIRDMEEDEKERLLRTIRVW 110 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + D +G ++K +R +G++Q + K LG+ +SN E GRT +K + Sbjct: 5 ENDFDFVDLGPKVKLLRLQQGLTQNKVAKELGVTPGYVSNVENGRTAMSLKVLCYYANLV 64 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 +D + E + + ++D+K Sbjct: 65 GLSVDSLVGKIEPEYRSVALDHELQFMIRDMEEDEKER 102 >gi|253699444|ref|YP_003020633.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774294|gb|ACT16875.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 106 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 36/97 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +G RIK++RK +Q+E+A ++ E G S+ + Sbjct: 1 MKNTKELLGARIKELRKGRKLSQEELAELIGIEPRHMSRIEVGKSYPSLDRLERIAMALN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +D ++ R +V + LK Sbjct: 61 VDLRDFFDFAHLEARPVNVDQINDILKEMTDEDLKKA 97 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 AR+K +RK + +SQ E +L+G+ +S E G++ P + +I L + Sbjct: 10 ARIKELRKGRKLSQEELAELIGIEPRHMSRIEVGKSYPSLDRLERIAMALNVDLRDFF 67 >gi|167770329|ref|ZP_02442382.1| hypothetical protein ANACOL_01672 [Anaerotruncus colihominis DSM 17241] gi|167667651|gb|EDS11781.1| hypothetical protein ANACOL_01672 [Anaerotruncus colihominis DSM 17241] Length = 70 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 33/68 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+++R+ + +QK+MA + ++ + +E G + + + L + + S D++ Sbjct: 3 ERIRNMREDKDLSQKDMAEILHVSQTTYSDYELGKINIPTQTLIKLASFHHTSIDYLLGL 62 Query: 94 EVIDRRYE 101 Y+ Sbjct: 63 TDNPASYQ 70 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 33/60 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++++R+DK +SQ + ++L + +T S+YE G+ + K+ +D++ Sbjct: 1 MNERIRNMREDKDLSQKDMAEILHVSQTTYSDYELGKINIPTQTLIKLASFHHTSIDYLL 60 >gi|288925158|ref|ZP_06419093.1| DNA-binding protein [Prevotella buccae D17] gi|288337923|gb|EFC76274.1| DNA-binding protein [Prevotella buccae D17] Length = 184 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R + E +L G+ E G P + KI + LD + FG Sbjct: 10 ERLKGLRDVLDIPAEEVAELCGITLDHYLKIEAGEADPSVYRLSKISKRYGIALDVLLFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + KG S + +KD K Sbjct: 70 EEPRMSAYFLTRKGQGMSVERRKDYK 95 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 27/77 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +G R+K +R + +E+A E G S+ + Y Sbjct: 1 MEEAIQQIGERLKGLRDVLDIPAEEVAELCGITLDHYLKIEAGEADPSVYRLSKISKRYG 60 Query: 85 ISFDWIYDGEVIDRRYE 101 I+ D + GE Sbjct: 61 IALDVLLFGEEPRMSAY 77 >gi|302873902|ref|YP_003842535.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|302576759|gb|ADL50771.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 66 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++ ++K+ RK TQ E+A +N EN + ++ AL + +S + Sbjct: 1 MKEMKNKVKEFRKQLKLTQDELAQELGVTRQTINAIENNKYNPTLELALKMSRFLGVSTE 60 Query: 89 WIY 91 ++ Sbjct: 61 SLF 63 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + ++K RK ++Q E + LG+ T++ E + P ++ A K+ + + Sbjct: 1 MKEMKNKVKEFRKQLKLTQDELAQELGVTRQTINAIENNKYNPTLELALKMSRFLGVSTE 60 Query: 171 WIYFGD 176 ++ D Sbjct: 61 SLFILD 66 >gi|89889583|ref|ZP_01201094.1| hypothetical protein BBFL7_01400 [Flavobacteria bacterium BBFL7] gi|89517856|gb|EAS20512.1| hypothetical protein BBFL7_01400 [Flavobacteria bacterium BBFL7] Length = 251 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G IK IR + +Q+ A + + +E G I + + N + IS D I Sbjct: 4 FGKNIKKIRGIKSLSQQAFADLFDLKRGTLGAYEEGRSEPKIETIIKIANYFSISIDDIL 63 Query: 92 DGEVIDRRYEDVTNK 106 E+ + ++ Sbjct: 64 TAELTVNQLLRFNDR 78 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +K IR K +SQ F L + TL YE+GR+ P+I+ KI +D Sbjct: 1 MSFFGKNIKKIRGIKSLSQQAFADLFDLKRGTLGAYEEGRSEPKIETIIKIANYFSISID 60 Query: 171 WIYFGD 176 I + Sbjct: 61 DILTAE 66 >gi|71907867|ref|YP_285454.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71847488|gb|AAZ46984.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 119 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 6/110 (5%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + + K +G + + RK TQ+ +A ++ E G S+ L Sbjct: 6 KDSARLAKRLGGNLSERRKQLGWTQEMVAERVGVDAETISRIERGAHLPSLPTLDRLAVA 65 Query: 83 YEISFDWIYDGEVIDRRYED------VTNKKRLDPYAIGARLKSIRKDKG 126 S + E + E ++ D + +++ + G Sbjct: 66 LRCSAGDLLSNEGPEEASEAATFGAWISELGTDDRAFVMTVVRNCCEYLG 115 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L RK G +Q + +G+ T+S E+G +P + ++ + + + Sbjct: 18 NLSERRKQLGWTQEMVAERVGVDAETISRIERGAHLPSLPTLDRLAVALRCSAGDLLSNE 77 >gi|134300625|ref|YP_001114121.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053325|gb|ABO51296.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 124 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G RIK++R+ + TQK++A+ ++ E + L + + +S Sbjct: 1 MPTLGQRIKELREKFSLTQKDLALVIGFTSARSIQYIEADKRGLDHNALITLADYFNVSL 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 D++ + + + Y + AR K + Sbjct: 61 DYLLGRSDDPTPSQTQSTESAKKLYDVIARAKDL 94 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 4/93 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +R+ ++Q + ++G ++ E + + + LD++ Sbjct: 6 QRIKELREKFSLTQKDLALVIGFTSARSIQYIEADKRGLDHNALITLADYFNVSLDYLLG 65 Query: 175 GDEVIVPKSIKRAKGNQSSK---KSKKDKKSSN 204 + P + + + KD N Sbjct: 66 RSDDPTPSQTQSTESAKKLYDVIARAKDLPEQN 98 >gi|323494352|ref|ZP_08099464.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis LMG 20546] gi|323311515|gb|EGA64667.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis LMG 20546] Length = 180 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG ++K IR +Q+E+A + S ++ E + + S+ + + IS Sbjct: 2 DVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 + E+ + T + D Sbjct: 62 FTIEIEAKDDIFFTVDQMAD 81 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +LK+IR +G+SQ E K G+ NS +S EQ P + +KI + Sbjct: 1 MDVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGE 60 Query: 172 IYFGD 176 + + Sbjct: 61 FFTIE 65 >gi|257086213|ref|ZP_05580574.1| predicted protein [Enterococcus faecalis D6] gi|256994243|gb|EEU81545.1| predicted protein [Enterococcus faecalis D6] Length = 250 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 84 WLLHGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 133 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYE 147 +I + + K + +GAR++ RK K + +G+ + ST+SN+E Sbjct: 2 YILRTPYPHIYSKRSVSMK-ITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWE 60 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 G +P + +KI + +DW+ GD Sbjct: 61 LGLNLPNKRYLKKIAKACDTTVDWLLHGD 89 >gi|229021393|ref|ZP_04178016.1| transcriptional regulator, XRE [Bacillus cereus AH1273] gi|229023660|ref|ZP_04180152.1| transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228737585|gb|EEL88089.1| transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228739894|gb|EEL90268.1| transcriptional regulator, XRE [Bacillus cereus AH1273] Length = 120 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 35/93 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G ++++RK TQK++A+ ES + ++E + N ++++ D Sbjct: 1 MKTFGNILRELRKEKKITQKDLALTLKLSESTIGMYERNERQPDYDTLNRIANYFKVTTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + + + +K Sbjct: 61 FLLGRTTSYQEHVPTNIDVDPELSLWFKDIKDA 93 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G L+ +RK+K ++Q + L + ST+ YE+ P+ +I K D Sbjct: 1 MKTFGNILRELRKEKKITQKDLALTLKLSESTIGMYERNERQPDYDTLNRIANYFKVTTD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ + KD K ++P Sbjct: 61 FLLGRTTSYQEHVPTNIDVDPELSLWFKDIKDASP 95 >gi|255092517|ref|ZP_05321995.1| putative phage repressor [Clostridium difficile CIP 107932] Length = 113 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN------QLESAVNLFENGMCSTSIRYALYLRNEYEI 85 G R K +R N TQ E+ N +S ++ +EN I + +++ Sbjct: 4 FGERFKFLRTEMNLTQDELVEKFNKVYLTSFNKSTISQYENNKRKPEINILENWADFFDV 63 Query: 86 SFDWIYDGEVIDRRYEDVTNKK 107 S D++ ++ + V K Sbjct: 64 SIDYLLGRTLVRNHIDTVATHK 85 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 6/69 (8%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLG------MPNSTLSNYEQGRTIPEIKPARKIKQV 164 G R K +R + ++Q E + ST+S YE + PEI Sbjct: 1 MATFGERFKFLRTEMNLTQDELVEKFNKVYLTSFNKSTISQYENNKRKPEINILENWADF 60 Query: 165 TKKHLDWIY 173 +D++ Sbjct: 61 FDVSIDYLL 69 >gi|182440037|ref|YP_001827756.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780706|ref|ZP_08239971.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus XylebKG-1] gi|178468553|dbj|BAG23073.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661039|gb|EGE45885.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus XylebKG-1] Length = 190 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 25/73 (34%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ Q + + +K R T +A A + E + S+ + L + Sbjct: 2 SDLDQLTQSLARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADA 61 Query: 83 YEISFDWIYDGEV 95 +S + D E Sbjct: 62 LGVSITTLLDHEE 74 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 26/73 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK R ++G + G+ + EQ RT P + K+ + + Sbjct: 13 RNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDH 72 Query: 176 DEVIVPKSIKRAK 188 +E + + ++ Sbjct: 73 EEGAQVRLVPESR 85 >gi|167769693|ref|ZP_02441746.1| hypothetical protein ANACOL_01027 [Anaerotruncus colihominis DSM 17241] gi|167668054|gb|EDS12184.1| hypothetical protein ANACOL_01027 [Anaerotruncus colihominis DSM 17241] Length = 235 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 11/100 (11%), Positives = 32/100 (32%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDR 98 +RK +QK A ++ ++ +E G+ + + + + Y +S D++ Sbjct: 12 LRKERGISQKLAASKLGISQALLSHYEKGIRECGLDFLIRCADFYGVSCDYMLGRSPDRT 71 Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + + +++ L + Sbjct: 72 GSKLTVEDIPEPDSVGKENVFKSGVLPVLNKKLIANSLNI 111 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +RK++G+SQ LG+ + LS+YE+G + + D++ Sbjct: 12 LRKERGISQKLAASKLGISQALLSHYEKGIRECGLDFLIRCADFYGVSCDYML 64 >gi|126179762|ref|YP_001047727.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862556|gb|ABN57745.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 69 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK R ++ TQ+ +A + E G S+ A + + ++ + I+ Sbjct: 3 NRIKVYRAMHDLTQEGLANELGVTRQTILAIEKGKYDPSLELAFKIAGFFGVTIEDIF 60 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R ++Q LG+ T+ E+G+ P ++ A KI ++ I+ Sbjct: 1 MKNRIKVYRAMHDLTQEGLANELGVTRQTILAIEKGKYDPSLELAFKIAGFFGVTIEDIF 60 Query: 174 -FGD 176 +GD Sbjct: 61 LYGD 64 >gi|330683978|gb|EGG95740.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU121] Length = 179 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K++RK N TQ+E+A + + ++ E+ S S+ L + S Sbjct: 2 EIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + D Y G L + Sbjct: 62 FKETEQQKVIYKKEEQIIYDEYDRGYILNWL 92 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 29/77 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK++RK K ++Q E + + +S E P ++ I +V Sbjct: 1 MEIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASD 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + E K + Sbjct: 61 FFKETEQQKVIYKKEEQ 77 >gi|325066311|ref|ZP_08124984.1| XRE family transcriptional regulator [Actinomyces oris K20] Length = 67 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK +R + +Q + LG+ T++ E GR P + A I +V ++ I+ Sbjct: 1 MRNDLKVLRAQRSWTQARLAEELGVSRQTVNALEAGRYDPSLPLAFTIARVFGLTIEEIF 60 Query: 174 FGDEV 178 F D+ Sbjct: 61 FPDDE 65 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + TQ +A VN E G S+ A + + ++ + I+ + Sbjct: 5 LKVLRAQRSWTQARLAEELGVSRQTVNALEAGRYDPSLPLAFTIARVFGLTIEEIFFPDD 64 Query: 96 I 96 Sbjct: 65 E 65 >gi|218132335|ref|ZP_03461139.1| hypothetical protein BACPEC_00194 [Bacteroides pectinophilus ATCC 43243] gi|291086949|ref|ZP_06344978.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|217992673|gb|EEC58675.1| hypothetical protein BACPEC_00194 [Bacteroides pectinophilus ATCC 43243] gi|291076456|gb|EFE13820.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 204 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 4/95 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS--TSIRYALYLRNEYEISF 87 K R+K++R N TQ+E+ N ++ +E G + S L L +++ Sbjct: 30 KTFADRLKELRNIRNYTQEELGKITNISVQSIRRYEQGRLNEEPSAYNLLQLAKALDVTP 89 Query: 88 DWIYDGEVIDRRYED--VTNKKRLDPYAIGARLKS 120 +++ G+ Y + K+L+ Y + +K Sbjct: 90 EYLLIGDNNMTSYTEAIKRELKQLNDYGQISEIKE 124 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 4/118 (3%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + ++ + RLK +R + +Q E GK+ + ++ YEQG Sbjct: 8 LTCEQLQKTEIILYWRYRMNTEKTFADRLKELRNIRNYTQEELGKITNISVQSIRRYEQG 67 Query: 150 RTI--PEIKPARKIKQVTKKHLDWIYFGDEVIVP--KSIKRAKGNQSSKKSKKDKKSS 203 R P ++ + +++ GD + ++IKR + + K + Sbjct: 68 RLNEEPSAYNLLQLAKALDVTPEYLLIGDNNMTSYTEAIKRELKQLNDYGQISEIKET 125 >gi|205375274|ref|ZP_03228064.1| post-exponential-phase response transcriptional regulator [Bacillus coahuilensis m4-4] Length = 107 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R N + E+A A +S ++ E + S+++ + +S D I Sbjct: 2 IGERVKQLRLEKNMSMTELAERAGVAKSYLSAIERNLQKNPSVQFLEKVAQALGVSMDSI 61 Query: 91 YDGEVIDRRYEDVTN----KKRLDPYAIGARLKSIRKDKGMS 128 + D++ D + D + K + Sbjct: 62 LFNQQEDKQAVDPDWLDIVHQAQDSGITKEQFKEFIEFNKWR 103 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R +K MS E + G+ S LS E+ + P ++ K+ Q +D Sbjct: 1 MIGERVKQLRLEKNMSMTELAERAGVAKSYLSAIERNLQKNPSVQFLEKVAQALGVSMDS 60 Query: 172 IYFGDEV 178 I F + Sbjct: 61 ILFNQQE 67 >gi|116619126|ref|YP_819497.1| hypothetical protein LEUM_2054 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097973|gb|ABJ63124.1| hypothetical protein LEUM_2054 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 255 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 2/133 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK IR N TQ E A + V+ +E ++ + + I + Sbjct: 3 EINKIIKKIRDDNKLTQTEFAAFLSVSHQTVSSWERARTRPTLVMLKKISQSFNIPLSKL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + ++ + +K++L + L S + ++ + G+ +S+ Sbjct: 63 LPVDKVPKKSKRDLDKEKLAHAFL--CLLSRSDMRNVTMQDIILESGLSPHYVSSLFSTP 120 Query: 151 TIPEIKPARKIKQ 163 A KI+Q Sbjct: 121 LDILTFIAMKIEQ 133 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y I +K IR D ++Q EF L + + T+S++E+ RT P + +KI Q L Sbjct: 1 MYEINKIIKKIRDDNKLTQTEFAAFLSVSHQTVSSWERARTRPTLVMLKKISQSFNIPLS 60 Query: 171 WIYFGDEVIVPK 182 + D+V Sbjct: 61 KLLPVDKVPKKS 72 >gi|99078239|ref|YP_611497.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99035377|gb|ABF62235.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 190 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 12/121 (9%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+G R++ +R+ N +Q+ +A S ++L E+G + S+ + + IS Sbjct: 11 EDLGPRLRSVREKANLSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGIPISLSD 70 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + E + + L I K K + L G + YE Sbjct: 71 FFAFEPETEKAS----------FYAAEDLTEIGKGKVSLKQVGANLFG--RQMMILYETY 118 Query: 150 R 150 Sbjct: 119 E 119 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 35/84 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+S+R+ +SQ K G+PNST+S E G+ P + R+I L + + Sbjct: 17 LRSVREKANLSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGIPISLSDFFAFEP 76 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 S A+ K K K Sbjct: 77 ETEKASFYAAEDLTEIGKGKVSLK 100 >gi|330470351|ref|YP_004408094.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328813322|gb|AEB47494.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 226 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD- 88 DVG I+D+R+ + +++A A ++ E G+ S L + +S Sbjct: 8 PDVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRRPSAEVLQQLASALRVSTPA 67 Query: 89 -WIYDGEVIDRRYEDVTNKKRLDP 111 ++ G + D+ + V +DP Sbjct: 68 MYLRAGLLDDKEGQGVLAAIAVDP 91 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G ++ +R++ +S + + G+ N LS E+G P + +++ + Sbjct: 6 DLPDVGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRRPSAEVLQQLASALRVST 65 >gi|324324347|gb|ADY19607.1| prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 114 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +K +RK+ + Q+++A N S +N +ENG + L + + ++ D Sbjct: 1 MKTFSETLKTLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLD 60 Query: 89 WI 90 + Sbjct: 61 VL 62 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 LK++RK + + Q + L + S ++NYE G + P++ ++ LD Sbjct: 1 MKTFSETLKTLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLD 60 Query: 171 WI 172 + Sbjct: 61 VL 62 >gi|58580009|ref|YP_199025.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622006|ref|YP_449378.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713709|ref|ZP_02244916.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] gi|58424603|gb|AAW73640.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365946|dbj|BAE67104.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 66 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R++++R+A+ +Q E+ +N E G S+ A + + S + ++ Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVFLY 62 Query: 94 EV 95 E Sbjct: 63 ED 64 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 37/64 (57%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +R++ +R+ G SQ E G+ LG+ T++ E G+ P + A +I ++ + ++ ++ Sbjct: 1 MNSRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 Query: 174 FGDE 177 ++ Sbjct: 61 LYED 64 >gi|315027060|gb|EFT38992.1| helix-turn-helix protein [Enterococcus faecalis TX2137] Length = 232 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 66 WLLHGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 115 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD 176 +DW+ GD Sbjct: 61 DTTVDWLLHGD 71 >gi|310816433|ref|YP_003964397.1| uncharacterized transcription regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308755168|gb|ADO43097.1| uncharacterized transcription regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 73 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 27/70 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG +R+A TQ+++ + + ++ E G + +I L +S Sbjct: 4 RRLVGGNFARLRQAKGLTQEDVEARSGFSQQYISGLERGQRNPTIITLYELAQALGVSHV 63 Query: 89 WIYDGEVIDR 98 + + + Sbjct: 64 ELITPQNDET 73 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +R+ KG++Q + G +S E+G+ P I ++ Q + Sbjct: 13 RLRQAKGLTQEDVEARSGFSQQYISGLERGQRNPTIITLYELAQALGVSHVELIT 67 >gi|301066067|ref|YP_003788090.1| transcriptional regulator [Lactobacillus casei str. Zhang] gi|300438474|gb|ADK18240.1| transcriptional regulator [Lactobacillus casei str. Zhang] Length = 187 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 30/88 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R T ++A A + ++ +E G + S L + +E + ++ Sbjct: 3 NRIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGTRTPSAEVLKKLADIFETNTAYLMGL 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +N K + + + Sbjct: 63 TDAPAETLTNSNLKNIKFEVRSEAFQRL 90 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K+ R +KG + + K GMP +TLSNYE+G P + +K+ + + + ++ Sbjct: 1 MKNRIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGTRTPSAEVLKKLADIFETNTAYLM 60 >gi|291526890|emb|CBK92476.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 97 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G+RIK +R A N TQ+++A E+G S ++ + +++ I Sbjct: 5 LGSRIKALRIAKNLTQEQVADQIGVSRQKYARVESGTNSITLDILSKVAEILDVTVGDI 63 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+K++R K ++Q + +G+ + E G + K+ ++ + I Sbjct: 7 SRIKALRIAKNLTQEQVADQIGVSRQKYARVESGTNSITLDILSKVAEILDVTVGDI-TR 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 P R G +SS + D Sbjct: 66 VLDETPVVAYRTGGTESSSEKIFD 89 >gi|83313343|ref|YP_423607.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948184|dbj|BAE53048.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 476 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 32/91 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ +Q +A+ S +N EN ++ L + ++ + Sbjct: 9 LGYKLRRLREGKKLSQAALAVLLEVSPSYLNQIENNQRPLTVPVLLRIAKVLDVDLATLV 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + E + + L +R Sbjct: 69 EDEESRLVADLREALNDPVFGSGSIGLSELR 99 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R+ K +SQ LL + S L+ E + + +I +V L + +E Sbjct: 13 LRRLREGKKLSQAALAVLLEVSPSYLNQIENNQRPLTVPVLLRIAKVLDVDLATLVEDEE 72 Query: 178 VIVPKSIKRA 187 + ++ A Sbjct: 73 SRLVADLREA 82 >gi|317123049|ref|YP_004103052.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315593029|gb|ADU52325.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 193 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 7/118 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ IR++ N + E+ + ++ +E S+ L YE+ Sbjct: 3 DLGGRLRRIRESRNLSIYEVERRTGMHFTTISKYERNERQPSLDVLRELAALYEVPVTVF 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK----GMSQIEFGK---LLGMPNS 141 E+ L + + +G+ Sbjct: 63 LTDELALETVLPPKLAALARQLLDRPALAEACERLAALDDRQVEAVAEFLDRVGLTRR 120 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+ IR+ + +S E + GM +T+S YE+ P + R++ + + + + Sbjct: 8 LRRIRESRNLSIYEVERRTGMHFTTISKYERNERQPSLDVLRELAALYEVPVTVFLTDE 66 >gi|307710469|ref|ZP_07646906.1| putative transcriptional regulator [Streptococcus mitis SK564] gi|307618732|gb|EFN97871.1| putative transcriptional regulator [Streptococcus mitis SK564] Length = 113 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K +RK TQ ++A + A +E G+ + + + +S D++ Sbjct: 2 EFSERLKTLRKQAQLTQVDVAEKLGISQPAYASWERGIKKPTQENLVKIAQILNVSVDYL 61 Query: 91 YDGEVIDRRYEDVTN 105 D Sbjct: 62 VGNSDYTEDKLDNIE 76 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK++RK ++Q++ + LG+ +++E+G P + KI Q+ +D+ Sbjct: 1 MEFSERLKTLRKQAQLTQVDVAEKLGISQPAYASWERGIKKPTQENLVKIAQILNVSVDY 60 Query: 172 IYFGDEVIVPK 182 + + K Sbjct: 61 LVGNSDYTEDK 71 >gi|255018407|ref|ZP_05290533.1| hypothetical protein LmonF_13171 [Listeria monocytogenes FSL F2-515] Length = 163 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKS 183 G+ V+V K Sbjct: 61 L-GETVMVSKV 70 >gi|254418818|ref|ZP_05032542.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3] gi|196184995|gb|EDX79971.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3] Length = 69 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G+R+K++R A TQ+ +A A +N ENG+ S AL L + + Sbjct: 4 PRLGSRLKELRTAAGFTQQGLADKAGVSRKTINTVENGVFIPSTIVALDLARALNTTVEA 63 Query: 90 IYDGEV 95 I+ + Sbjct: 64 IFYLKD 69 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +RLK +R G +Q G+ T++ E G IP A + + ++ I++ Sbjct: 8 SRLKELRTAAGFTQQGLADKAGVSRKTINTVENGVFIPSTIVALDLARALNTTVEAIFY 66 >gi|160945426|ref|ZP_02092652.1| hypothetical protein FAEPRAM212_02948 [Faecalibacterium prausnitzii M21/2] gi|158443157|gb|EDP20162.1| hypothetical protein FAEPRAM212_02948 [Faecalibacterium prausnitzii M21/2] Length = 66 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + TQ ++A AV +E+ C I + + L Y++S D++ Sbjct: 4 ISERLQHLRLTHGYTQTDLARTMGVTRRAVYAWEHDKC-PEILHLIQLAQFYQVSTDYLL 62 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RL+ +R G +Q + + +G+ + +E + PEI ++ Q + D Sbjct: 1 MTIISERLQHLRLTHGYTQTDLARTMGVTRRAVYAWEHDKC-PEILHLIQLAQFYQVSTD 59 Query: 171 WIY 173 ++ Sbjct: 60 YLL 62 >gi|15894128|ref|NP_347477.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15023733|gb|AAK78817.1|AE007599_13 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508255|gb|ADZ19891.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 179 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 34/91 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R TQ+E+A + ++ E + S SI + + + Sbjct: 2 DIGEKIKRLRIEKQLTQEELANRCELSKGFISQIERNLTSPSIATLTDILDALGTNLPDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ + + LK + Sbjct: 62 FKEDNQEKIVFKKDDMCETSDEELKYNLKWL 92 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R +K ++Q E + +S E+ T P I I +L Sbjct: 1 MDIGEKIKRLRIEKQLTQEELANRCELSKGFISQIERNLTSPSIATLTDILDALGTNLPD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + D K S ++ K + K Sbjct: 61 FFKEDNQEKIVFKKDDMCETSDEELKYNLK 90 >gi|228957650|ref|ZP_04119398.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802035|gb|EEM48904.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 107 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + + Q + Sbjct: 62 LHDETTKEINLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQ 106 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|149278032|ref|ZP_01884171.1| hypothetical protein PBAL39_25120 [Pedobacter sp. BAL39] gi|149231230|gb|EDM36610.1| hypothetical protein PBAL39_25120 [Pedobacter sp. BAL39] Length = 121 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G RIK++R A+ +Q ++ S + E G S ++ N Y +++W Sbjct: 8 KEIGERIKNLRLAHGLSQAHISNILYLSRSNYSQIELGNQFPSFNTLHHIGNYYGKTYEW 67 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + G D E K + + + LK++ Sbjct: 68 LLHG-SSDPALEQPATKVDVIIRDLESTLKAL 98 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 L IG R+K++R G+SQ +L + S S E G P I K Sbjct: 5 LSKKEIGERIKNLRLAHGLSQAHISNILYLSRSNYSQIELGNQFPSFNTLHHIGNYYGKT 64 Query: 169 LDWIYFG 175 +W+ G Sbjct: 65 YEWLLHG 71 >gi|118574103|sp|Q8TZX4|Y1851_PYRFU RecName: Full=Putative HTH-type transcriptional regulatory protein PF1851 Length = 315 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 +NP S+ + EY L++ + + G R++++R+ + E+A +V Sbjct: 98 VNPETLFSILAGTEYPLVMAERGGFFVRIDGERLRELREKYGYSTTELAEMLGVSRKSVQ 157 Query: 63 LFENGMCSTSIRYALYLRNEYE 84 +E G SI A+ L ++ Sbjct: 158 RYEKGEGMVSIDVAIRLEEIFD 179 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 39/88 (44%) Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 Y ++ + ++ + + G RL+ +R+ G S E ++LG+ Sbjct: 95 IYAVNPETLFSILAGTEYPLVMAERGGFFVRIDGERLRELREKYGYSTTELAEMLGVSRK 154 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ YE+G + I A +++++ + L Sbjct: 155 SVQRYEKGEGMVSIDVAIRLEEIFDEPL 182 >gi|18978223|ref|NP_579580.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638] gi|18894036|gb|AAL81975.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638] Length = 316 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 +NP S+ + EY L++ + + G R++++R+ + E+A +V Sbjct: 99 VNPETLFSILAGTEYPLVMAERGGFFVRIDGERLRELREKYGYSTTELAEMLGVSRKSVQ 158 Query: 63 LFENGMCSTSIRYALYLRNEYE 84 +E G SI A+ L ++ Sbjct: 159 RYEKGEGMVSIDVAIRLEEIFD 180 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 39/88 (44%) Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 Y ++ + ++ + + G RL+ +R+ G S E ++LG+ Sbjct: 96 IYAVNPETLFSILAGTEYPLVMAERGGFFVRIDGERLRELREKYGYSTTELAEMLGVSRK 155 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ YE+G + I A +++++ + L Sbjct: 156 SVQRYEKGEGMVSIDVAIRLEEIFDEPL 183 >gi|251811353|ref|ZP_04825826.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|251805102|gb|EES57759.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] Length = 189 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V +IK R+ + +Q+ +A ++ +EN I L + ++I D + Sbjct: 2 NVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHKLLIMCQLFKIYLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + + + + K LD + + Sbjct: 62 VEDDLKNGQIKSIK--KELDFWTCMMII 87 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K R+ G SQ + + + T+SN+E ++ P+I + Q+ K +LD Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHKLLIMCQLFKIYLDE 60 Query: 172 IYFGD 176 + D Sbjct: 61 LVEDD 65 >gi|239630752|ref|ZP_04673783.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527035|gb|EEQ66036.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 190 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 31/88 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R T ++A A + ++ +E G + S L + +E + ++ Sbjct: 6 NRIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGTRTPSAEVLKKLADIFETNTAYLMGL 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +N K ++ + + Sbjct: 66 TDAPAETLTNSNLKNIEFEVRSGAFQRL 93 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+K+ R +KG + + K GMP +TLSNYE+G P + +K+ + + + Sbjct: 1 MITLKNRIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGTRTPSAEVLKKLADIFETNTA 60 Query: 171 WIY 173 ++ Sbjct: 61 YLM 63 >gi|163814737|ref|ZP_02206126.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC 27759] gi|158450372|gb|EDP27367.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC 27759] Length = 108 Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E + +G RIK RK+ N TQ+E+ ++ E+G S++ + L Sbjct: 1 MNREEKVNSMIIGQRIKYARKSMNLTQEELGRLMCTDGKYISRLESGKSLPSLKRLVQLS 60 Query: 81 NEYEISFDWIY 91 + + D+ Sbjct: 61 RALKCTCDYFL 71 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 40/78 (51%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + +++++ IG R+K RK ++Q E G+L+ +S E G+++P +K ++ Sbjct: 1 MNREEKVNSMIIGQRIKYARKSMNLTQEELGRLMCTDGKYISRLESGKSLPSLKRLVQLS 60 Query: 163 QVTKKHLDWIYFGDEVIV 180 + K D+ + +V Sbjct: 61 RALKCTCDYFLWDMDVPE 78 >gi|317128356|ref|YP_004094638.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315473304|gb|ADU29907.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 111 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G R+K RK T E+A A +S ++ E + SI++ + N +S D++ Sbjct: 2 IGERVKRYRKEAGMTLTELADKAGVAKSYLSALERNIQTNPSIQFLEKVANVLGLSIDYL 61 Query: 91 YDGEVIDRRYEDVT 104 +V + D Sbjct: 62 LKDQVDNVSIVDED 75 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 9/99 (9%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K RK+ GM+ E G+ S LS E+ +T P I+ K+ V +D+ Sbjct: 1 MIGERVKRYRKEAGMTLTELADKAGVAKSYLSALERNIQTNPSIQFLEKVANVLGLSIDY 60 Query: 172 IYFG--------DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + DE I + + + +S SK++ + Sbjct: 61 LLKDQVDNVSIVDEDIDKEWVNLVQEAMNSGVSKEEFRD 99 >gi|257460926|ref|ZP_05626027.1| putative transcriptional regulator [Campylobacter gracilis RM3268] gi|257442257|gb|EEV17399.1| putative transcriptional regulator [Campylobacter gracilis RM3268] Length = 233 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R+ TQ E+A + +++ L+E ++ + ++ D Sbjct: 2 NLGLRIKNLREERGLTQLELANLSGISRASIQLYEADKVEIPVKKLSDISKVLDVDID-- 59 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + + + A LK +K++ Sbjct: 60 FFTKDKSSLVLRKSFVSNKNSVVSPANLKKSQKEQ 94 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K++R+++G++Q+E L G+ +++ YE + +K I +V +D+ Sbjct: 7 IKNLREERGLTQLELANLSGISRASIQLYEADKVEIPVKKLSDISKVLDVDIDFFTKDKS 66 Query: 178 --VIVPKSIKRAKGNQSSKKSKKDKKSS 203 V+ + S KK +K Sbjct: 67 SLVLRKSFVSNKNSVVSPANLKKSQKEQ 94 >gi|227498411|ref|ZP_03928557.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226903869|gb|EEH89787.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 123 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI ++R+ Q E+A AN + +N E G L + + +S D++ Sbjct: 2 NIGDRIAELREQAGMKQYELAQKANMNPAVLNRIETGKRPARDDEIKALAHIFHVSTDYL 61 Query: 91 YDGEVIDRRYEDVT 104 + T Sbjct: 62 LGTSDSGYYTDPET 75 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+ +R+ GM Q E + M + L+ E G+ + + + D+ Sbjct: 1 MNIGDRIAELREQAGMKQYELAQKANMNPAVLNRIETGKRPARDDEIKALAHIFHVSTDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + + + A+ Q Sbjct: 61 LLGTSDSGYYTDPETARLAQE 81 >gi|225388243|ref|ZP_03757967.1| hypothetical protein CLOSTASPAR_01978 [Clostridium asparagiforme DSM 15981] gi|225045711|gb|EEG55957.1| hypothetical protein CLOSTASPAR_01978 [Clostridium asparagiforme DSM 15981] Length = 116 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 38/97 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++ +G RIK R + TQ+ +A A+ + ++ E G S+ + L N Sbjct: 1 MELDYRAIGKRIKIARIKADLTQEALAEKASLSTTHMSNIETGNSKLSLPTIVSLANALS 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S D VI + + L ++ I Sbjct: 61 VSVDEFLCDSVIHSKDIFSQEIQDLVSDCDEYEIRMI 97 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD AIG R+K R ++Q + + + +SN E G + + + Sbjct: 1 MELDYRAIGKRIKIARIKADLTQEALAEKASLSTTHMSNIETGNSKLSLPTIVSLANALS 60 Query: 167 KHLDWIYFGDEVIVPKSI 184 +D D VI K I Sbjct: 61 VSVDEFLC-DSVIHSKDI 77 >gi|229918124|ref|YP_002886770.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469553|gb|ACQ71325.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 179 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG IK +R TQ+E+A + + ++ E + S S+ L N S Sbjct: 2 EVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKEF 61 Query: 91 YDGEVIDRRYEDVTNK 106 +D E+ + V ++ Sbjct: 62 FDEELNQKVVYTVDDR 77 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 2/92 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +K +R KG++Q E + + +S E+ + P ++ + V Sbjct: 1 MEVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DE + K + ++ ++ Sbjct: 61 FF--DEELNQKVVYTVDDRTIYTDEERKYRTE 90 >gi|296876650|ref|ZP_06900698.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|312867662|ref|ZP_07727868.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|322389318|ref|ZP_08062877.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|296432152|gb|EFH17951.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|311096725|gb|EFQ54963.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|321143982|gb|EFX39401.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 66 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ R +Q +A +N+ ENG + S+ + L E + ++ Sbjct: 2 NRVKEYRVNLGLSQLALAKSIGVSRQTINMIENGKYNPSLDLCINLAKELGTDLNSLF 59 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R + G+SQ+ K +G+ T++ E G+ P + + + L+ +++ Sbjct: 1 MNRVKEYRVNLGLSQLALAKSIGVSRQTINMIENGKYNPSLDLCINLAKELGTDLNSLFW 60 >gi|268608723|ref|ZP_06142450.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 238 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 28/71 (39%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 RK + +QK+ A ++ ++ +E G+ + + + + + Y +S D++ Sbjct: 13 RKERHISQKQAATDLGISQALLSHYEKGIRECGLNFLVKIADYYNVSCDYLLGRTPEPEG 72 Query: 100 YEDVTNKKRLD 110 D Sbjct: 73 KTITIEDIPDD 83 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 RK++ +SQ + LG+ + LS+YE+G + KI D++ Sbjct: 13 RKERHISQKQAATDLGISQALLSHYEKGIRECGLNFLVKIADYYNVSCDYLLGRTPEPEG 72 Query: 182 KSIK 185 K+I Sbjct: 73 KTIT 76 >gi|228912350|ref|ZP_04076044.1| hypothetical protein bthur0013_64220 [Bacillus thuringiensis IBL 200] gi|228847298|gb|EEM92258.1| hypothetical protein bthur0013_64220 [Bacillus thuringiensis IBL 200] Length = 108 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ ++RK TQ ++A N + +E G + L Y +S D ++ Sbjct: 4 LSKRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKADPDADSIMNLAEIYNVSIDELF 63 Query: 92 DGEVIDRRYEDVTNKKRLD 110 + D Sbjct: 64 GRNAPLESKLEQIKVAISD 82 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 34/75 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK +G +Q + L + +T +N+E G+ P+ + ++ +D Sbjct: 1 MSHLSKRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKADPDADSIMNLAEIYNVSID 60 Query: 171 WIYFGDEVIVPKSIK 185 ++ + + K + Sbjct: 61 ELFGRNAPLESKLEQ 75 >gi|228939078|ref|ZP_04101675.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971956|ref|ZP_04132576.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978567|ref|ZP_04138942.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228781166|gb|EEM29369.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228787773|gb|EEM35732.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820606|gb|EEM66634.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939578|gb|AEA15474.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 112 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++GT++K +R T +E+A + +S + +E + + L + ++ + D+I Sbjct: 2 NIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADVFDTTADFI 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 G + + K LD Sbjct: 62 L-GRTDNPNSLNFNVKDFLDQ 81 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK +R +G + E +G +ST S YE + P + ++ V D+ Sbjct: 1 MNIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADVFDTTADF 60 Query: 172 IY 173 I Sbjct: 61 IL 62 >gi|199597846|ref|ZP_03211272.1| transcriptional regulator, PbsX family protein [Lactobacillus rhamnosus HN001] gi|258509577|ref|YP_003172328.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|199591282|gb|EDY99362.1| transcriptional regulator, PbsX family protein [Lactobacillus rhamnosus HN001] gi|257149504|emb|CAR88477.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259650844|dbj|BAI43006.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 70 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R ++ TQ+++A V+ ENG + S+ A L + + + + I+ Sbjct: 3 NRIEALRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIFID 62 Query: 94 EVIDRR 99 E D + Sbjct: 63 ESADSK 68 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++++R ++Q + L + T+S+ E GR P + A K+ V ++ I+ Sbjct: 1 MENRIEALRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIF 60 Query: 174 FGD 176 + Sbjct: 61 IDE 63 >gi|167758401|ref|ZP_02430528.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704] gi|167664298|gb|EDS08428.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704] Length = 179 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 34/68 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R A N TQ+E+A A + ++ E + S SI + + + + Sbjct: 2 EIGPKLRELRIAKNLTQEELADRAELSKGFISQLERDLTSPSIATLVDILQCLGTTINEF 61 Query: 91 YDGEVIDR 98 + + ++ Sbjct: 62 FSEDPEEQ 69 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+ +R K ++Q E + +S E+ T P I I Q ++ Sbjct: 1 MEIGPKLRELRIAKNLTQEELADRAELSKGFISQLERDLTSPSIATLVDILQCLGTTINE 60 Query: 172 IYFGD 176 + D Sbjct: 61 FFSED 65 >gi|163733254|ref|ZP_02140698.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161393789|gb|EDQ18114.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 187 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T E Q + R+KD R+ + +A + S V+ E G S +I L Sbjct: 1 MTEETDQILGQLPARLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLT 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 ++ F + D + E + + +G L+ Sbjct: 61 RALQVDFAGLLDVAATKSKIETLRSGDVPTIENLGKGLR 99 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ +G+S KL G+ S +S E+G + P I + + + + Sbjct: 13 PARLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLL- 71 Query: 175 GDEVIVPKSIKRAKG 189 D I+ + Sbjct: 72 -DVAATKSKIETLRS 85 >gi|222054772|ref|YP_002537134.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564061|gb|ACM20033.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 181 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R N+ TQ+E+A A+ + ++ EN S SI + + + +S Sbjct: 2 KIGERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQEF 61 Query: 91 YDGEVIDRRYEDVT 104 + + + Sbjct: 62 FSETIDEDVVYGKD 75 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK +R ++Q E + +S E T P I + I V + Sbjct: 1 MKIGERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + + + K + +K Sbjct: 61 FFS---ETIDEDVVYGKDYRVQASGDDEK 86 >gi|78186413|ref|YP_374456.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166315|gb|ABB23413.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 205 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 33/90 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G RIK++R +Q+E+A +AV E+G R IS Sbjct: 4 ENIGQRIKELRGQKGLSQEELARRIAMPRTAVTKIESGSQEVRFRELAKFAEALGISLGT 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + + R + + D ++ Sbjct: 64 LLEERRPVRESVEDAFLRVSDSAQGYGHIR 93 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG R+K +R KG+SQ E + + MP + ++ E G + K + Sbjct: 1 MTEENIGQRIKELRGQKGLSQEELARRIAMPRTAVTKIESGSQEVRFRELAKFAEALGIS 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 L + + V +S++ A Sbjct: 61 LGTLL-EERRPVRESVEDA 78 >gi|238786359|ref|ZP_04630292.1| DNA-binding phage-related protein [Yersinia bercovieri ATCC 43970] gi|238712730|gb|EEQ04809.1| DNA-binding phage-related protein [Yersinia bercovieri ATCC 43970] Length = 100 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 PF E L++ + Q K + ++KD RKA + TQ+++A + ++ Sbjct: 10 PFSEAKALLLEDSATLEAYNEIQIRKALMQQLKDARKALHLTQQDVAQKIGTQKQNISRM 69 Query: 65 ENGMCSTSIRYALYLRNEYE 84 ENG ++ Sbjct: 70 ENGGSVPNLATLSRYAAALG 89 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 A+ +LK RK ++Q + + +G +S E G ++P + + Sbjct: 36 ALMQQLKDARKALHLTQQDVAQKIGTQKQNISRMENGGSVPNLATLSRYAAALG 89 >gi|330862695|emb|CBX72841.1| hypothetical protein YEW_CE09110 [Yersinia enterocolitica W22703] Length = 178 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 35/111 (31%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L N Sbjct: 26 KKTLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALN 85 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + + ++ D L S R + + Sbjct: 86 VEPWQFFVSDSSEDNDTELLVPYAADGSCFHPGLASSRDGSFGVGDKAAQK 136 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+K +R GMSQ F G S +S E+G + + + Sbjct: 31 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALNVEPWQ 90 Query: 172 IYFGD 176 + D Sbjct: 91 FFVSD 95 >gi|327461171|gb|EGF07504.1| hypothetical protein HMPREF9394_1037 [Streptococcus sanguinis SK1057] Length = 523 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K R A TQ +A N A++ +ENG +IR + EISF+ + Sbjct: 2 IGNFLKQKRLAMGLTQDFVAKQLNISRQAISNWENGSRDINIRDLIAYAKILEISFEDL 60 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG LK R G++Q K L + +SN+E G I+ ++ + + + Sbjct: 1 MIGNFLKQKRLAMGLTQDFVAKQLNISRQAISNWENGSRDINIRDLIAYAKILEISFEDL 60 >gi|183597672|ref|ZP_02959165.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] gi|188022942|gb|EDU60982.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] Length = 100 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 5/98 (5%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + VG I+ RK + E+A + V+ +E G C+ ++ L L E Sbjct: 1 MKNVNQIVGKEIRKRRKELGLSGAELAGLVGISQQQVSRYERGECNITLDNLLSLAKALE 60 Query: 85 ISF-----DWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 D I+ E D K L + + Sbjct: 61 TDLICFFNDEIFSIEGRVELINDNEIKNNLVNHMVVNH 98 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 31/76 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ RK+ G+S E L+G+ +S YE+G + + + + L + Sbjct: 10 KEIRKRRKELGLSGAELAGLVGISQQQVSRYERGECNITLDNLLSLAKALETDLICFFND 69 Query: 176 DEVIVPKSIKRAKGNQ 191 + + ++ N+ Sbjct: 70 EIFSIEGRVELINDNE 85 >gi|19705233|ref|NP_602728.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329087|ref|ZP_06871592.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713186|gb|AAL94027.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153806|gb|EFG94619.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 184 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K R + +E+A S ++ E G S SI + + ++ ++ Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + E D R + K+ + Sbjct: 63 EDEEDDIRNIEYIKKENIRYIE 84 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R DKGMS E + + S LS EQG+ P I+ +KI + + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + +E + K N Sbjct: 61 LIEDEEDDIRNIEYIKKEN 79 >gi|220916216|ref|YP_002491520.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954070|gb|ACL64454.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 410 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 9/116 (7%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G RI RK N TQ ++A + + E G S + L ++S Sbjct: 5 QKLGERIAFARKNANLTQADLAAKIGVARTTLVAVEKGERRPSNAELIKLAGFLKVSVHD 64 Query: 90 IYD-----GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 + GEV R + A+ RL+S+ G E +LLG+ Sbjct: 65 LLREHAVTGEVSPRFRMTAPPGNATEANAVVKRLQSL----GSRYAELEQLLGLRR 116 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+ RK+ ++Q + +G+ +TL E+G P K+ K + + Sbjct: 9 ERIAFARKNANLTQADLAAKIGVARTTLVAVEKGERRPSNAELIKLAGFLKVSVHDLL 66 >gi|58039039|ref|YP_191003.1| aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H] gi|58001453|gb|AAW60347.1| Aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H] Length = 180 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R A N +Q+E+A S ++L E+G + S+ + + ++ Sbjct: 2 DLGARLRFVRTARNLSQRELAKRTGVTNSTISLIESGDMNPSVGTLKRILDGIPVTLGEF 61 Query: 91 Y 91 + Sbjct: 62 F 62 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 33/78 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GARL+ +R + +SQ E K G+ NST+S E G P + ++I L Sbjct: 1 MDLGARLRFVRTARNLSQRELAKRTGVTNSTISLIESGDMNPSVGTLKRILDGIPVTLGE 60 Query: 172 IYFGDEVIVPKSIKRAKG 189 + K RA Sbjct: 61 FFSIAPEGGEKIFYRADE 78 >gi|295101270|emb|CBK98815.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] Length = 109 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 9/116 (7%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + ++G I+ R+ TQ ++ + ++ E G S+ L Sbjct: 3 EKKDINIEIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLL 62 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 +S D I G ++ D + + Q +L M Sbjct: 63 GVSADRIIFGTEEPEAEALALARRISDIKP---------EYRQQVQELLSAILNMS 109 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 37/78 (47%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ R+ G +Q ++LGM + LS E+G + ++ +++ ++ D I FG Sbjct: 14 NIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGVSADRIIFGT 73 Query: 177 EVIVPKSIKRAKGNQSSK 194 E +++ A+ K Sbjct: 74 EEPEAEALALARRISDIK 91 >gi|293402548|ref|ZP_06646683.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304062|gb|EFE45316.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 100 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE- 94 I D RK N TQ+++A AV+ +E G L L IS + + G+ Sbjct: 10 IADCRKELNMTQRQIAERLGITNRAVSKWETGKSMPDASLMLELCEALHISINELLCGKR 69 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + + + + L + L+++R Sbjct: 70 LNELEERKESEQNTLAMFMAKNELENLR 97 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 39/82 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ I + RK+ M+Q + + LG+ N +S +E G+++P+ ++ + Sbjct: 1 MNQIQIDRFIADCRKELNMTQRQIAERLGITNRAVSKWETGKSMPDASLMLELCEALHIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 ++ + G + + K ++ N Sbjct: 61 INELLCGKRLNELEERKESEQN 82 >gi|257465738|ref|ZP_05630109.1| Repressor of flagellae, putative [Actinobacillus minor 202] gi|257451398|gb|EEV25441.1| Repressor of flagellae, putative [Actinobacillus minor 202] Length = 110 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G IK IRK +Q+E+A + ++ ++ ENG + I + + + +S + I Sbjct: 4 LGDNIKRIRKTAGISQQELADMSGVSKAQISRLENGEQNNPQINTIVSIASNLGVSIEEI 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 GE D K L P ++ + K Sbjct: 64 IYGEKTDSFSYLEKALKEL-PQDDQESIRKLIK 95 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHL 169 +G +K IRK G+SQ E + G+ + +S E + P+I I + Sbjct: 1 MNHLGDNIKRIRKTAGISQQELADMSGVSKAQISRLENGEQNNPQINTIVSIASNLGVSI 60 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + I +G++ +++A + +K Sbjct: 61 EEIIYGEKTDSFSYLEKALKELPQDDQESIRK 92 >gi|253751715|ref|YP_003024856.1| antidote epsilon protein [Streptococcus suis SC84] gi|253755571|ref|YP_003028711.1| antidote epsilon protein [Streptococcus suis BM407] gi|251816004|emb|CAZ51621.1| antidote epsilon protein [Streptococcus suis SC84] gi|251818035|emb|CAZ55824.1| antidote epsilon protein [Streptococcus suis BM407] Length = 158 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +R+ ++ TQ E A ++++ +ENG + S + ++ +S Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 56 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+R+ ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLTP 69 >gi|229020729|ref|ZP_04177452.1| Transcriptional regulator [Bacillus cereus AH1273] gi|229026999|ref|ZP_04183317.1| Transcriptional regulator [Bacillus cereus AH1272] gi|229190542|ref|ZP_04317539.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228592887|gb|EEK50709.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228734316|gb|EEL84992.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228740530|gb|EEL90805.1| Transcriptional regulator [Bacillus cereus AH1273] Length = 125 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+GT++K +R T +E+A + +S + +E + + L + ++ + D+I Sbjct: 15 DIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADIFDTTTDFI 74 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 G + + K LD Sbjct: 75 L-GRTENPNGLNFNVKDFLDQ 94 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 N + IG +LK +R +G + E +G +ST S YE + P + Sbjct: 2 KNIKENLTGVKSMDIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLV 61 Query: 160 KIKQVTKKHLDWIYFGDE 177 ++ + D+I E Sbjct: 62 QLADIFDTTTDFILGRTE 79 >gi|332361261|gb|EGJ39065.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 72 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R+ + TQK++A + SA E G S + L N Y +S D++ Sbjct: 3 KRLRDLREDRDLTQKQVAEYLSFTHSAYAKIERGERILSAEILIKLSNLYSVSIDYLLGL 62 Query: 94 EVIDRRYEDV 103 R Sbjct: 63 SDFPDRIIKK 72 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+D+ ++Q + + L +S + E+G I + K+ + +D++ Sbjct: 1 MYKRLRDLREDRDLTQKQVAEYLSFTHSAYAKIERGERILSAEILIKLSNLYSVSIDYLL 60 >gi|306833652|ref|ZP_07466779.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424422|gb|EFM27561.1| transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 168 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + +R+ +G IK +R+ ++ TQ E A ++++ +ENG + S + Sbjct: 1 MKANMRRSLSMIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRIC 60 Query: 81 NEYEIS 86 ++ +S Sbjct: 61 QKFNVS 66 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+R+ ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 71 VGEDKMLAP 79 >gi|297153608|gb|ADI03320.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 172 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 10/120 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++++R+A + + E+A + + ++ E G + ++ L + Sbjct: 7 VGLRLRELREAQDLSLSELARRSAIGKGTLSELEGGRRNPTLETLYALTTALNVPLSTAL 66 Query: 92 DG-----EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 G E+ R + V ++ D A+ + IR G +Q T + Sbjct: 67 HGLALPAEISGRAVDAVLTERFEDASAVTETYR-IRIRAGTTQESAAH----SPGTTEHI 121 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ +R+ + +S E + + TLS E GR P ++ + L Sbjct: 11 LRELREAQDLSLSELARRSAIGKGTLSELEGGRRNPTLETLYALTTALNVPL 62 >gi|166032371|ref|ZP_02235200.1| hypothetical protein DORFOR_02074 [Dorea formicigenerans ATCC 27755] gi|226324025|ref|ZP_03799543.1| hypothetical protein COPCOM_01803 [Coprococcus comes ATCC 27758] gi|166028094|gb|EDR46851.1| hypothetical protein DORFOR_02074 [Dorea formicigenerans ATCC 27755] gi|225207574|gb|EEG89928.1| hypothetical protein COPCOM_01803 [Coprococcus comes ATCC 27758] Length = 83 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ + TQK M N + + +E G + L + S D++ + Sbjct: 9 QRIRDLREDRDLTQKNMGEILNCSQRIYSNYECGDVDIPTHILIKLAEFHNTSVDYLLNL 68 Query: 94 EVIDRRYEDVTN 105 R Y N Sbjct: 69 TDDKRPYPRKKN 80 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ + R++ +R+D+ ++Q G++L SNYE G K+ + Sbjct: 1 MLEVKHMYQRIRDLREDRDLTQKNMGEILNCSQRIYSNYECGDVDIPTHILIKLAEFHNT 60 Query: 168 HLDWIYFGDEVIVPKSIKR 186 +D++ + P K+ Sbjct: 61 SVDYLLNLTDDKRPYPRKK 79 >gi|254302178|ref|ZP_04969536.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322370|gb|EDK87620.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 184 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K R + +E+A S ++ E G S SI + + ++ ++ Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + E D R + K+ + Sbjct: 63 EDEEDDIRNIEHIKKENIRYIE 84 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R DKGMS E + + S LS EQG+ P I+ +KI + + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + +E + K N Sbjct: 61 LIEDEEDDIRNIEHIKKEN 79 >gi|315607404|ref|ZP_07882402.1| DNA-binding protein [Prevotella buccae ATCC 33574] gi|315250904|gb|EFU30895.1| DNA-binding protein [Prevotella buccae ATCC 33574] Length = 184 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R + E +L G+ E G P + KI + LD + FG Sbjct: 10 ERLKGLRDVLDIPAEEVAELCGITLDHYLKIEAGEADPSVYRLSKISKRYGIALDVLLFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + KG S + +KD K Sbjct: 70 EEPRMSAYFLTRKGQGMSVERRKDYK 95 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 27/77 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R+K +R + +E+A E G S+ + Y Sbjct: 1 MEEAIKQIGERLKGLRDVLDIPAEEVAELCGITLDHYLKIEAGEADPSVYRLSKISKRYG 60 Query: 85 ISFDWIYDGEVIDRRYE 101 I+ D + GE Sbjct: 61 IALDVLLFGEEPRMSAY 77 >gi|317054120|ref|YP_004118145.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952115|gb|ADU71589.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 199 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R++ +RKA +E+A +S ++ E + SI L + I+ + Sbjct: 20 NVGIRLRAVRKARGMRIEEVAEKVGVSKSFISRLERNVTQASIATLLKVCEVVGITPAKL 79 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +D L + L Sbjct: 80 FDPPSTSFVPAGQGTPISLGGEKMREYL 107 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 D + +G RL+++RK +GM E + +G+ S +S E+ T I Sbjct: 3 EDEADNHGQEANNTPDFNVGIRLRAVRKARGMRIEEVAEKVGVSKSFISRLERNVTQASI 62 Query: 156 KPARKIKQVTKKHLDWIY 173 K+ +V ++ Sbjct: 63 ATLLKVCEVVGITPAKLF 80 >gi|228967299|ref|ZP_04128334.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228792334|gb|EEM39901.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +K +RK+ + Q+++A N S VN +ENG + L + + ++ D Sbjct: 1 MKTFSETLKTLRKSRSLRQEDLAHELNLSRSQVNNYENGFSEPDLTTLFRLASYFNVTLD 60 Query: 89 WI 90 + Sbjct: 61 VL 62 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 LK++RK + + Q + L + S ++NYE G + P++ ++ LD Sbjct: 1 MKTFSETLKTLRKSRSLRQEDLAHELNLSRSQVNNYENGFSEPDLTTLFRLASYFNVTLD 60 Query: 171 WI 172 + Sbjct: 61 VL 62 >gi|197118272|ref|YP_002138699.1| transcriptional regulator with cupin-like beta-barrel domain [Geobacter bemidjiensis Bem] gi|197087632|gb|ACH38903.1| transcriptional regulator with cupin-like beta-barrel domain, putative [Geobacter bemidjiensis Bem] Length = 188 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK +R A T + +A + ++ EN S I + +++ Sbjct: 6 NIGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQF 65 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + +RR+E V +R Sbjct: 66 FSEDEDNRRFEVVRADQR 83 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y IG R+K +R + ++ G + +S E P I KI + L Sbjct: 5 YNIGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQ 64 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + DE + RA Sbjct: 65 FFSEDEDNRRFEVVRADQR 83 >gi|114799059|ref|YP_759118.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739233|gb|ABI77358.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 143 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 9/127 (7%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I + Q + VG R++ R TQ ++A + +E G S + Sbjct: 4 IKLSDANQVDRQVGERMRRRRILLGLTQDQVADALGISYQQIQKYETGANRISAGRLAQI 63 Query: 80 RNEYEISFDWIY--------DGEVIDRRYEDVTNKKRLDPYAIGARLKSI-RKDKGMSQI 130 E+ W + G E V N R++ + L ++ R G + Sbjct: 64 AEVLEVLPGWFFGVPEAADAPGSSSRAVIELVRNFSRIEDERVRTHLMALMRSLSGSGEG 123 Query: 131 EFGKLLG 137 E +L G Sbjct: 124 ESAELEG 130 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ R G++Q + LG+ + YE G +I +V + W + Sbjct: 18 ERMRRRRILLGLTQDQVADALGISYQQIQKYETGANRISAGRLAQIAEVLEVLPGWFF 75 >gi|49082322|gb|AAT50561.1| PA4077 [synthetic construct] Length = 69 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R +Q E+A VN E G S+ A L + ++ + I+D Sbjct: 3 NRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIFDD 62 Query: 94 EV 95 Sbjct: 63 RE 64 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R ++G SQ E L + T++ E GR P + A K+ +V ++ I+ Sbjct: 1 MRNRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIF 60 Query: 174 FGDE 177 E Sbjct: 61 DDRE 64 >gi|15895738|ref|NP_349087.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15025492|gb|AAK80427.1|AE007746_14 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325509888|gb|ADZ21524.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 78 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 40/76 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R+ G++Q + G L+G+ +++ E + P I A I +V K +++I+ Sbjct: 1 MKNRLKELREAFGLTQEQLGNLIGVSRQAINSIETEKCEPSIWLAYDISKVFHKSIEYIF 60 Query: 174 FGDEVIVPKSIKRAKG 189 +E K+ +G Sbjct: 61 LFEESEKKSRAKQIRG 76 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+A TQ+++ A+N E C SI A + + S ++I+ Sbjct: 3 NRLKELREAFGLTQEQLGNLIGVSRQAINSIETEKCEPSIWLAYDISKVFHKSIEYIFLF 62 Query: 94 EVIDRRYEDVT 104 E +++ Sbjct: 63 EESEKKSRAKQ 73 >gi|307711152|ref|ZP_07647574.1| putative transcriptional regulator [Streptococcus mitis SK321] gi|307617114|gb|EFN96292.1| putative transcriptional regulator [Streptococcus mitis SK321] Length = 149 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 22/168 (13%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ +QKE+A + +ENG A L + + +S ++ + Sbjct: 2 NRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAKQLADYFGVSVGYLLN- 60 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + K D Y + R + ++ K + +YE+ R Sbjct: 61 -------YTNSKKDPFDGYIPTP--REYRSWQEFDYMQLSK----TDLDFYDYEKLR--- 104 Query: 154 EIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDK 200 K + L++ + DE + ++I + + + KKD Sbjct: 105 --KHLEPFA--LELMLNYFFCTDDERELLRTIAKKFAKKDAVSFKKDN 148 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +R++K +SQ E + +G+ TL N+E G + + + A+++ + ++ Sbjct: 1 MNRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAKQLADYFGVSVGYLL 59 >gi|294101955|ref|YP_003553813.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293616935|gb|ADE57089.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 235 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ ++R TQ E+A + +E + + L + E S ++ Sbjct: 4 GKRLSELRVKRGLTQLELAEKLGVSFHTILRWEKERRFPDVFHLSILADVLETSVAYLMG 63 Query: 93 GEVIDRRYED 102 + Sbjct: 64 EKKNGSGKYY 73 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RL +R +G++Q+E + LG+ T+ +E+ R P++ + V + + + Sbjct: 1 MFSGKRLSELRVKRGLTQLELAEKLGVSFHTILRWEKERRFPDVFHLSILADVLETSVAY 60 Query: 172 IY 173 + Sbjct: 61 LM 62 >gi|262197418|ref|YP_003268627.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080765|gb|ACY16734.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 140 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 1/99 (1%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G ++ R A TQ+ A E G S+ + + +E+ Sbjct: 3 KNLAAAMGRTMRRARTAQGLTQERAAERIGVSVEFYARIERGNAHPSVPTLYRIASAFEV 62 Query: 86 SFDWIYD-GEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 S D + + + + DP + + +R+ Sbjct: 63 SADALIGLDQAAAAAPVSLADLHPDDPPPVRRAMSRLRE 101 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G ++ R +G++Q + +G+ + E+G P + +I + D + Sbjct: 8 AMGRTMRRARTAQGLTQERAAERIGVSVEFYARIERGNAHPSVPTLYRIASAFEVSADAL 67 Query: 173 YFGDEVIVPKSIKRAK 188 D+ + A Sbjct: 68 IGLDQAAAAAPVSLAD 83 >gi|262037710|ref|ZP_06011152.1| transcription regulator [Leptotrichia goodfellowii F0264] gi|261748182|gb|EEY35579.1| transcription regulator [Leptotrichia goodfellowii F0264] Length = 293 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K RK +Q++++ AV +E G+ I + +EIS D + Sbjct: 3 FAEKLKSFRKQAKMSQEKLSEKLGVSRQAVTKWETGLGIPEIENIRAISELFEISIDELL 62 Query: 92 DGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM--PNSTLSNY 146 E ++ Y + + +K I K + G+ + + ++TL++ Sbjct: 63 SDELEVKKEKDYLFESITEYDIDSIKHYDIKLIGAYKIILTGYSGEKIYVRFASNTLADI 122 Query: 147 EQG 149 E+ Sbjct: 123 EKD 125 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LKS RK MSQ + + LG+ ++ +E G IPEI+ R I ++ + +D Sbjct: 1 MTFAEKLKSFRKQAKMSQEKLSEKLGVSRQAVTKWETGLGIPEIENIRAISELFEISIDE 60 Query: 172 IYFGDEVIVPK 182 + + + + Sbjct: 61 LLSDELEVKKE 71 >gi|225375912|ref|ZP_03753133.1| hypothetical protein ROSEINA2194_01548 [Roseburia inulinivorans DSM 16841] gi|225212233|gb|EEG94587.1| hypothetical protein ROSEINA2194_01548 [Roseburia inulinivorans DSM 16841] Length = 98 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 39/92 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++ R ++ ++A + +S + L+E G+ S+ + L + Y++S D++ Sbjct: 7 KRLQNSRINAGLSRAQIARLLDVSDSLIGLYETGVRQPSLSTLIKLSSIYKVSTDYLLGC 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 E A+ ++ R+ + Sbjct: 67 ENTGNTSLSTQGLTDQQIRALKLTIQCFREKQ 98 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL++ R + G+S+ + +LL + +S + YE G P + K+ + K D++ Sbjct: 7 KRLQNSRINAGLSRAQIARLLDVSDSLIGLYETGVRQPSLSTLIKLSSIYKVSTDYLLGC 66 Query: 176 DEVIVPKSIKRAKGNQSSKKSK 197 + + +Q + K Sbjct: 67 ENTGNTSLSTQGLTDQQIRALK 88 >gi|225568403|ref|ZP_03777428.1| hypothetical protein CLOHYLEM_04480 [Clostridium hylemonae DSM 15053] gi|225162631|gb|EEG75250.1| hypothetical protein CLOHYLEM_04480 [Clostridium hylemonae DSM 15053] Length = 117 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 33/88 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N TQ +A N S + +E S L + + +S D++ +G Sbjct: 5 KRLKALRLKNEMTQDYVARRLNVARSTIAGYETKNRQPSHEKLTALASLFHVSVDYLLEG 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E + + + + + + Sbjct: 65 EETISITPSQSVPEPVTERNFLEKYRGL 92 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK++R M+Q + L + ST++ YE P + + + +D+ Sbjct: 1 MSFEKRLKALRLKNEMTQDYVARRLNVARSTIAGYETKNRQPSHEKLTALASLFHVSVDY 60 Query: 172 IYFGDEVI 179 + G+E I Sbjct: 61 LLEGEETI 68 >gi|149919002|ref|ZP_01907487.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149820155|gb|EDM79574.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 108 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +++G R++ +RK TQ+ +A A +V EN S S L + Sbjct: 6 REELGERLRTLRKRRGLTQEALAEAAEVSVDSVRRLENAAFSPSFDTLTKLAKGLNVP 63 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 25/63 (39%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + + +G RL+++RK +G++Q + + ++ E P K+ + Sbjct: 1 MEVMTREELGERLRTLRKRRGLTQEALAEAAEVSVDSVRRLENAAFSPSFDTLTKLAKGL 60 Query: 166 KKH 168 Sbjct: 61 NVP 63 >gi|332291093|ref|YP_004429702.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169179|gb|AEE18434.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 251 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 25/80 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I+ IR +Q+ A + + +E G I + + N + I D + Sbjct: 4 FGKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTIIKIANYFSIPIDDLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDP 111 E+ D Sbjct: 64 TKELTVNSLLKFKANLTTDH 83 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ IR K +SQ F +L + TL YE+GR+ P+I KI +D Sbjct: 1 MSFFGKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTIIKIANYFSIPID 60 Query: 171 WIYFGD 176 + + Sbjct: 61 DLLTKE 66 >gi|223985950|ref|ZP_03635985.1| hypothetical protein HOLDEFILI_03291 [Holdemania filiformis DSM 12042] gi|223962074|gb|EEF66551.1| hypothetical protein HOLDEFILI_03291 [Holdemania filiformis DSM 12042] Length = 94 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 34/82 (41%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + + + Y +++ R K M+Q E L+G+ T+ E+ R P + Sbjct: 13 PLKSKKGGEPMASNKYRFESKIHVYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSML 72 Query: 157 PARKIKQVTKKHLDWIYFGDEV 178 I +V ++ ++ +EV Sbjct: 73 LVYNIAKVFGVTIEDLFDFEEV 94 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 24/62 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++I R TQ+E+A + E + S+ + + ++ + ++D Sbjct: 32 SKIHVYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSMLLVYNIAKVFGVTIEDLFDF 91 Query: 94 EV 95 E Sbjct: 92 EE 93 >gi|119487541|ref|ZP_01621151.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] gi|119455710|gb|EAW36846.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] Length = 72 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 33/67 (49%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K +G+ I+ +R++ +Q+++A A+ + + E G + S+ + + + + Sbjct: 4 EPRKKLGSNIRQLRRSQGLSQEKLAEKADLHRTYIGAIERGERNVSLDNIVAIAHALGVP 63 Query: 87 FDWIYDG 93 + +G Sbjct: 64 ASKLLEG 70 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 26/70 (37%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G+ ++ +R+ +G+SQ + + + + + E+G + I Sbjct: 1 MKHEPRKKLGSNIRQLRRSQGLSQEKLAEKADLHRTYIGAIERGERNVSLDNIVAIAHAL 60 Query: 166 KKHLDWIYFG 175 + G Sbjct: 61 GVPASKLLEG 70 >gi|170728642|ref|YP_001762668.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813989|gb|ACA88573.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 181 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I +K +R ++QIE ++ G+P +TL+N E + P I K+ Q +D + Sbjct: 5 INEGIKRLRAQHKLTQIELAEMAGIPRATLANMESSNSNPSISVVMKVAQALGVTVDDLI 64 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKK 198 + + ++R S + K Sbjct: 65 TQRQSVHVTKVERKDMPVSHQDEGK 89 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 28/83 (33%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK +R + TQ E+A A + + E+ + SI + + ++ D + Sbjct: 9 IKRLRAQHKLTQIELAEMAGIPRATLANMESSNSNPSISVVMKVAQALGVTVDDLITQRQ 68 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 + + G + Sbjct: 69 SVHVTKVERKDMPVSHQDEGKFI 91 >gi|116669644|ref|YP_830577.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116609753|gb|ABK02477.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 199 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 16/131 (12%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P + VG +++ +RKA T ++ ++ V+ E G+ + S L + Sbjct: 8 PPATSELLATVGNKVRTMRKAKGMTLARLSDITGLSQAIVSQIERGLANPSFTTLAQLAH 67 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG--MP 139 ++ + G+ + + + R K +++ G+ + + Sbjct: 68 GLDVPVGRFFIGQDESKSPVVRKSDR--------------RNLKNVTRESVGEAVHELLT 113 Query: 140 NSTLSNYEQGR 150 + N E Sbjct: 114 PNRDGNIEAQW 124 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 34/84 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++++RK KGM+ + G+ + +S E+G P ++ + + G Sbjct: 20 NKVRTMRKAKGMTLARLSDITGLSQAIVSQIERGLANPSFTTLAQLAHGLDVPVGRFFIG 79 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + ++++ +++ Sbjct: 80 QDESKSPVVRKSDRRNLKNVTRES 103 >gi|332668877|ref|YP_004451885.1| XRE family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337915|gb|AEE44498.1| transcriptional regulator, XRE family [Cellulomonas fimi ATCC 484] Length = 74 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V RI+ +R A + TQ E+A V E G S ++ A + + D + Sbjct: 7 VTNRIRALRFAADEMTQAELARRIGVTRQTVIAIEQGRYSPTLEMAFQIARVLGVPLDEV 66 Query: 91 YDGEVID 97 + D Sbjct: 67 FQYPDDD 73 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 115 GARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++++R M+Q E + +G+ T+ EQGR P ++ A +I +V LD ++ Sbjct: 8 TNRIRALRFAADEMTQAELARRIGVTRQTVIAIEQGRYSPTLEMAFQIARVLGVPLDEVF 67 >gi|329937439|ref|ZP_08286997.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329303315|gb|EGG47202.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 232 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R A + +E+A A +S ++ E G ++ + L + S D + + Sbjct: 18 RRIRALRVAQGWSLEELAARARLSQSTLSRIETGRRRLALDQLVTLARALDTSLDQLVET 77 Query: 94 EVID 97 V D Sbjct: 78 AVDD 81 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R +G S E + STLS E GR + + + LD + Sbjct: 17 RRRIRALRVAQGWSLEELAARARLSQSTLSRIETGRRRLALDQLVTLARALDTSLDQLVE 76 Query: 175 G--DEVIVPKSIKRAKGNQS 192 D+V+ S+ A G S Sbjct: 77 TAVDDVVSHPSVDAAHGQLS 96 >gi|323975381|gb|EGB70482.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 154 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 34/111 (30%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L N Sbjct: 2 KKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALS 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + ++ D L S R + + Sbjct: 62 VEPWQLLAPGPSEDNDSELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQK 112 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 G R+K +R G+SQ F G S +S E+G + + + Sbjct: 7 IQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSV 62 >gi|323934035|gb|EGB30492.1| helix-turn-helix protein [Escherichia coli E1520] Length = 154 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 34/111 (30%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L N Sbjct: 2 KKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALS 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + ++ D L S R + + Sbjct: 62 VEPWQLLAPGPSEDNDSELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQK 112 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 G R+K +R G+SQ F G S +S E+G + + + Sbjct: 7 IQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSV 62 >gi|306821502|ref|ZP_07455104.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550460|gb|EFM38449.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 73 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ ++RK TQ+E A ++ ENG + S+ A + + + + I+ Sbjct: 5 NKLDELRKLKGLTQEEFAKKLRVSRQTISAIENGKYNPSLDLAFEIAIYFNKTIEEIFTY 64 Query: 94 EVIDRRYED 102 E D + Sbjct: 65 EKEDNHEKK 73 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L +RK KG++Q EF K L + T+S E G+ P + A +I K ++ Sbjct: 1 MHLKNKLDELRKLKGLTQEEFAKKLRVSRQTISAIENGKYNPSLDLAFEIAIYFNKTIEE 60 Query: 172 IYFGDEV 178 I+ ++ Sbjct: 61 IFTYEKE 67 >gi|300917853|ref|ZP_07134492.1| helix-turn-helix protein [Escherichia coli MS 115-1] gi|300414950|gb|EFJ98260.1| helix-turn-helix protein [Escherichia coli MS 115-1] Length = 185 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 34/111 (30%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L N Sbjct: 33 KKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALS 92 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + ++ D L S R + + Sbjct: 93 VEPWQLLAPGPSEDNDSELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQK 143 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 5/95 (5%) Query: 75 YALYLRNEYEISFD--WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 L + + D ++ + + K+ G R+K +R G+SQ F Sbjct: 2 LVTKLAD---VRLDSKYLIWSVALQWSKLHIQCMKKSLRIQFGERVKELRIATGLSQEAF 58 Query: 133 GKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 G S +S E+G + + + Sbjct: 59 ADRCGFARSYMSRIERGGSNASLDAIEVLANALSV 93 >gi|302524530|ref|ZP_07276872.1| predicted protein [Streptomyces sp. AA4] gi|302433425|gb|EFL05241.1| predicted protein [Streptomyces sp. AA4] Length = 178 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 1/92 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI++ R T +++A A ++ E G+ S+ + +I ++ E Sbjct: 5 RIREFRTLRGLTVRQLADQAGVSTGLISQVERGVTDPSLETMRRIAEVLDIPLFSLFQ-E 63 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + + + R + + R G Sbjct: 64 PDEETVAVIRHDDRYRISSPHHAITYTRASPG 95 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ R +G++ + G+ +S E+G T P ++ R+I +V L + Sbjct: 1 MTVTRIREFRTLRGLTVRQLADQAGVSTGLISQVERGVTDPSLETMRRIAEVLDIPLFSL 60 Query: 173 YFGDEVIVPKSIK 185 + + I+ Sbjct: 61 FQEPDEETVAVIR 73 >gi|238059861|ref|ZP_04604570.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881672|gb|EEP70500.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 74 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 36 IKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 I+ +R AN TQ E+A + E G S S+ A + + + D +++ Sbjct: 11 IRALRFANGEMTQAELADRVGVTRQTIIAIEQGRYSPSLEVAFQIARVFNVPLDDVFEYP 70 Query: 95 VIDR 98 + Sbjct: 71 SSEE 74 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 115 GARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R G M+Q E +G+ T+ EQGR P ++ A +I +V LD ++ Sbjct: 8 TNSIRALRFANGEMTQAELADRVGVTRQTIIAIEQGRYSPSLEVAFQIARVFNVPLDDVF 67 >gi|283796930|ref|ZP_06346083.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075340|gb|EFE12704.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 111 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 1/108 (0%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K +G R+K R+ +Q+E+A + ++ E GM + L N E+S Sbjct: 2 IDKRIGKRVKQCRERLGISQEELAEKTGLTANYISTVERGMSFPRCEKLIILLNGLEVSA 61 Query: 88 DWIYDGEVI-DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 D I+ + Y+ ++L + A+ + ++ + M Q E Sbjct: 62 DAIFCDVLEHSTSYKSSELSEKLASLSPQAQKRILQMVELMIQQETAD 109 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG R+K R+ G+SQ E + G+ + +S E+G + P + + + Sbjct: 1 MIDKRIGKRVKQCRERLGISQEELAEKTGLTANYISTVERGMSFPRCEKLIILLNGLEVS 60 Query: 169 LDWIY 173 D I+ Sbjct: 61 ADAIF 65 >gi|195978222|ref|YP_002123466.1| hypothetical protein Sez_1101 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974927|gb|ACG62453.1| hypothetical protein Sez_1101 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 69 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++IRK TQ+E+A + ENG + SI A + ++++ + I+ Sbjct: 3 NRLEEIRKQKGITQEELANALEVSRQTIGSLENGRYNPSITLAFKIARFFDLTIEQIFSD 62 Query: 94 EVI 96 E Sbjct: 63 EED 65 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK KG++Q E L + T+ + E GR P I A KI + ++ I+ Sbjct: 1 MKNRLEEIRKQKGITQEELANALEVSRQTIGSLENGRYNPSITLAFKIARFFDLTIEQIF 60 Query: 174 FGDEVIVP 181 +E Sbjct: 61 SDEEDQNE 68 >gi|297203904|ref|ZP_06921301.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297148527|gb|EDY57126.2| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 234 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ R + +A S V+ E G S+ + IS + ++D Sbjct: 34 GARIRQARLERGLGLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVEALFD 93 Query: 93 GEVI 96 G Sbjct: 94 GRET 97 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R ++G+ + +G+ S +S E G++ P + I ++ ++ G Sbjct: 35 ARIRQARLERGLGLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVEALFDG 94 Query: 176 DEVIV 180 E V Sbjct: 95 RETAV 99 >gi|291550735|emb|CBL26997.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 643 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK + +Q + + LG+ ST +NYE G P+ + +I +V LD ++ Sbjct: 5 FNEYLTKLRKSRVYTQAQMAEKLGISRSTYTNYENGNRTPDFEVLERISEVLACSLDELF 64 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 46/173 (26%), Gaps = 24/173 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG-- 93 + +RK+ TQ +MA S +ENG + + S D ++ Sbjct: 9 LTKLRKSRVYTQAQMAEKLGISRSTYTNYENGNRTPDFEVLERISEVLACSLDELFGRKP 68 Query: 94 ----------EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 E +++ + +R+ Q + L Sbjct: 69 TYVASCDVVKEDSSLYNVSRIQEEKPKLAIGVQDFRDLRE----KQAYYVDKTQFIEQFL 124 Query: 144 SNYE------QGRTIPEIKPARKIKQVTKKHLD--WIYFGDEVIVPKSIKRAK 188 ++ + R + + + D ++ G ++ K Sbjct: 125 ESWYQITLITRPRRFGKTLNMSMLAEFLDCTKDSSDLFCGTKITKSVHYKELN 177 >gi|167765761|ref|ZP_02437814.1| hypothetical protein CLOSS21_00252 [Clostridium sp. SS2/1] gi|167712478|gb|EDS23057.1| hypothetical protein CLOSS21_00252 [Clostridium sp. SS2/1] Length = 264 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I +R +Q ++A AV+ +ENG + L E+++S + + Sbjct: 16 ILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTVPNTDTLRLLSKEFDVSINMLL 71 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 28/71 (39%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + + + +R ++GMSQ + + + +S +E G T+P R + Sbjct: 1 MIKMTEVTTMETKKIILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTVPNTDTLRLLS 60 Query: 163 QVTKKHLDWIY 173 + ++ + Sbjct: 61 KEFDVSINMLL 71 >gi|160880248|ref|YP_001559216.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428914|gb|ABX42477.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 380 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + I R+ TQ E+A +++V+ +E I + + + +S D Sbjct: 2 YLKLSENIITFRRKKGITQDELATFLGVTKASVSKWETKQSYPDILLLPQIASYFNVSID 61 Query: 89 WIYDGEVI 96 + E Sbjct: 62 ELLGYEPQ 69 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 36/76 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + + + R+ KG++Q E LG+ +++S +E ++ P+I +I +D Sbjct: 2 YLKLSENIITFRRKKGITQDELATFLGVTKASVSKWETKQSYPDILLLPQIASYFNVSID 61 Query: 171 WIYFGDEVIVPKSIKR 186 + + + + IK+ Sbjct: 62 ELLGYEPQLSEEQIKK 77 >gi|47093927|ref|ZP_00231665.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47017687|gb|EAL08482.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] Length = 194 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + ++G RIK++R + N TQ+E+ + + ++ E + S SI + Sbjct: 9 ERKDIDMEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVL 68 Query: 84 EISFDWIYDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 + +D E +++ + G R+K + Sbjct: 69 GSTPKDFFDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 107 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 15 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 74 Query: 172 IYFGDE 177 + +E Sbjct: 75 FFDEEE 80 >gi|310657705|ref|YP_003935426.1| DNA-binding protein [Clostridium sticklandii DSM 519] gi|308824483|emb|CBH20521.1| DNA-binding protein [Clostridium sticklandii] Length = 183 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 34/85 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + ++ +IK++RK T K++A S ++ ENG S +I L + + + Sbjct: 2 EILSEIADKIKELRKEKGYTLKDLADKTELSVSFLSQVENGSSSLAITSLKKLVDAFSVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDP 111 + + + + +K Sbjct: 62 MTYFFYSMETHNYHVKIDEQKSFKM 86 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK+KG + + + S LS E G + I +K+ + + ++ E Sbjct: 11 IKELRKEKGYTLKDLADKTELSVSFLSQVENGSSSLAITSLKKLVDAFSVPMTYFFYSME 70 Query: 178 V 178 Sbjct: 71 T 71 >gi|296110814|ref|YP_003621195.1| DNA-binding protein [Leuconostoc kimchii IMSNU 11154] gi|295832345|gb|ADG40226.1| DNA-binding protein [Leuconostoc kimchii IMSNU 11154] Length = 246 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 36/73 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R A+N TQ+E A +V+ +EN S L + + +++ ++ Sbjct: 3 IGDQIKQLRTAHNLTQQEFATKIYISYQSVSNWENHRSYPSAEIMLLIIDTFDLPLNYFM 62 Query: 92 DGEVIDRRYEDVT 104 D ++ ++ T Sbjct: 63 DKDIDPTTSQEET 75 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R ++Q EF + + ++SN+E R+ P + I L++ Sbjct: 1 MTIGDQIKQLRTAHNLTQQEFATKIYISYQSVSNWENHRSYPSAEIMLLIIDTFDLPLNY 60 Query: 172 IYFGDEVIVPKSIKR 186 D+ I P + + Sbjct: 61 FM--DKDIDPTTSQE 73 >gi|219667624|ref|YP_002458059.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537884|gb|ACL19623.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 63 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I+ RK N +Q+++A N +N EN ++ A L +++ D ++ Sbjct: 3 NNIRQYRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELFKS 62 Query: 94 E 94 + Sbjct: 63 K 63 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ RK+K +SQ + K + T++ E + P + A K+ +V + +D ++ Sbjct: 1 MNNNIRQYRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELF 60 Query: 174 F 174 Sbjct: 61 K 61 >gi|197284179|ref|YP_002150051.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194681666|emb|CAR40739.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 106 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ RK T ++A + + +E GM +R+ + L W + Sbjct: 15 VGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVLLALYLNTPIYWFF 74 Query: 92 DG 93 + Sbjct: 75 ED 76 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ RK+ G + ++ K +G+ S YE+G +++ + + W + Sbjct: 17 KKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVLLALYLNTPIYWFF-- 74 Query: 176 DEVIVPKSIKRAKG 189 ++ V K KG Sbjct: 75 EDCYVKKPSLNNKG 88 >gi|160944429|ref|ZP_02091657.1| hypothetical protein FAEPRAM212_01939 [Faecalibacterium prausnitzii M21/2] gi|166033500|ref|ZP_02236329.1| hypothetical protein DORFOR_03226 [Dorea formicigenerans ATCC 27755] gi|260437651|ref|ZP_05791467.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|261367918|ref|ZP_05980801.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|158444211|gb|EDP21215.1| hypothetical protein FAEPRAM212_01939 [Faecalibacterium prausnitzii M21/2] gi|166026685|gb|EDR45442.1| hypothetical protein DORFOR_03226 [Dorea formicigenerans ATCC 27755] gi|282570731|gb|EFB76266.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|292810006|gb|EFF69211.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|295104413|emb|CBL01957.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 65 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++RK Q+++A + ENG + SI+ A + + +S + I+ Sbjct: 3 NRLEELRKQRGIKQEDLANALEVSRQTIGSLENGRYNPSIQLAFKIARYFNMSIEEIFIY 62 Query: 94 EVI 96 E Sbjct: 63 EED 65 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +RK +G+ Q + L + T+ + E GR P I+ A KI + ++ I+ Sbjct: 1 MKNRLEELRKQRGIKQEDLANALEVSRQTIGSLENGRYNPSIQLAFKIARYFNMSIEEIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEED 65 >gi|56695338|ref|YP_165686.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677075|gb|AAV93741.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 193 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 RQ +GTR++++RKA T K++A ++ E S+R + + Sbjct: 7 RQTTPIIGTRMRELRKARGLTLKQLAAATGLSIGYLSQLERQAADPSVRALNVISTALGV 66 Query: 86 SFDWIYDGEVIDRRYEDV 103 +W + E Sbjct: 67 GINWFFPDPDTVSDPEAD 84 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK +G++ + G+ LS E+ P ++ I ++W + + Sbjct: 17 MRELRKARGLTLKQLAAATGLSIGYLSQLERQAADPSVRALNVISTALGVGINWFFPDPD 76 Query: 178 VIVP 181 + Sbjct: 77 TVSD 80 >gi|81428204|ref|YP_395204.1| prophage lsa1 XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609846|emb|CAI54893.1| Putative prophage lsa1 DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 259 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 I+ +R N +Q E+A A++ +E G+ + L + +++ ++ Sbjct: 3 NNIRKLRLEQNVSQAELAEVLKISRQAISNYEKGLREPKLETWKKLADYFDVPIGYL 59 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 37/73 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R ++ +SQ E ++L + +SNYE+G P+++ +K+ + ++ Sbjct: 1 MTNNIRKLRLEQNVSQAELAEVLKISRQAISNYEKGLREPKLETWKKLADYFDVPIGYLQ 60 Query: 174 FGDEVIVPKSIKR 186 D V + IK Sbjct: 61 GVDGVNINDLIKS 73 >gi|25011386|ref|NP_735781.1| hypothetical protein gbs1344 [Streptococcus agalactiae NEM316] gi|24412924|emb|CAD47003.1| unknown [Streptococcus agalactiae NEM316] Length = 158 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +R+ ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKIIGISRNSLSRYENGTSSVSTELIDRICQKFNVS 56 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+R+ ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKIIGISRNSLSRYENGTSSVSTELIDRICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMMTP 69 >gi|163847710|ref|YP_001635754.1| cupin 2 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525574|ref|YP_002570045.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668999|gb|ABY35365.1| Cupin 2 conserved barrel domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449453|gb|ACM53719.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 211 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVGTRI+ +R+ + + +A + + ++L ENG S S+ L ++ Sbjct: 18 DVGTRIRTLREQRRLSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPVSTF 77 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +V +R + + + + Sbjct: 78 FTPDVPQQRIVFTPAGQAIASLFPHGAMADL 108 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++++R+ + +S + G+ +TLS E GRT P + +++ + + + D Sbjct: 23 IRTLREQRRLSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPVSTFFTPD 81 >gi|317133873|ref|YP_004089784.1| transcriptional regulator, XRE family [Ruminococcus albus 7] gi|315450335|gb|ADU23898.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 208 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RIK+ R +Q E+A S++N E G + + +++ Sbjct: 3 ETIGKRIKEARIKKGLSQTELAGKLGYKSRSSINKIETGGRDIPKSQVVKIAEILDLTPS 62 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 ++ E K + Sbjct: 63 YLMGWENSPAHNILSREKIHM 83 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 1/74 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R KG+SQ E LG S+++ E G KI ++ ++ Sbjct: 7 KRIKEARIKKGLSQTELAGKLGYKSRSSINKIETGGRDIPKSQVVKIAEILDLTPSYLMG 66 Query: 175 GDEVIVPKSIKRAK 188 + + R K Sbjct: 67 WENSPAHNILSREK 80 >gi|288560390|ref|YP_003423876.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543100|gb|ADC46984.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 113 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 5/95 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G R++ +R++ +Q ++A + ++ E G + ++ L Y + Sbjct: 1 MKKIGQRLQGLRESKGLSQSDLANYLGISQPLLSQIEAGNRNLNLSLLDKLCALYGCTDS 60 Query: 89 WIYDGEVIDR-----RYEDVTNKKRLDPYAIGARL 118 +I + ++ LD + ++ Sbjct: 61 YILCKDDEYNAVNFSFRSKNAAREDLDCISSVHKI 95 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG RL+ +R+ KG+SQ + LG+ LS E G + K+ + Sbjct: 1 MKKIGQRLQGLRESKGLSQSDLANYLGISQPLLSQIEAGNRNLNLSLLDKLCALYGCTDS 60 Query: 171 WIYFGDEV 178 +I D+ Sbjct: 61 YILCKDDE 68 >gi|167461736|ref|ZP_02326825.1| putative prophage LambdaCh01, repressor protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 120 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R+ ++RK N TQ ++A + SAV ++E G + + L + +++ D++ Sbjct: 7 LGSRMAELRKKRNMTQAKLASIVKKSTSAVAMWETGKRDPDSQMIIELSSIFDVPTDYLL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + + LK R + +S + K + + Sbjct: 67 GRTNDPDDRLKYSARNE-------NYLKIERFARKVSNEDLEKAVKI 106 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 38/89 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+ +RK + M+Q + ++ S ++ +E G+ P+ + ++ + D++ Sbjct: 9 SRMAELRKKRNMTQAKLASIVKKSTSAVAMWETGKRDPDSQMIIELSSIFDVPTDYLLGR 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + A+ K + +K SN Sbjct: 69 TNDPDDRLKYSARNENYLKIERFARKVSN 97 >gi|156934075|ref|YP_001437991.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894] gi|156532329|gb|ABU77155.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894] Length = 191 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I + +G RI+ R+ + E+A A + ++ E G S + L Sbjct: 5 IDTLNQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLSGALG 64 Query: 85 ISFDWIY 91 +S + Sbjct: 65 LSMSTLI 71 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 33/86 (38%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + N IG R++ R+ +G S E + G+ + + E+G + P ++ Sbjct: 1 MNNIIDTLNQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLS 60 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAK 188 + + E+ + ++ A Sbjct: 61 GALGLSMSTLIARAEMNEGRLLRFAD 86 >gi|56421430|ref|YP_148748.1| hypothetical protein GK2895 [Geobacillus kaustophilus HTA426] gi|56381272|dbj|BAD77180.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 180 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++ +I+DIRK + T KE++ S ++ E G S +I + + E+ Sbjct: 1 MEEIYRKIRDIRKQRDLTLKELSEKTGLSVSFLSQVERGTTSLAITSLKKIADALEVPIT 60 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 ++ E V +K Sbjct: 61 DFFENEANQNFVVKVEKRKPF 81 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +++ IRK + ++ E + G+ S LS E+G T I +KI + + Sbjct: 1 MEEIYRKIRDIRKQRDLTLKELSEKTGLSVSFLSQVERGTTSLAITSLKKIADALEVPIT 60 Query: 171 WIYFGD 176 + + Sbjct: 61 DFFENE 66 >gi|312883075|ref|ZP_07742806.1| hypothetical protein VIBC2010_07299 [Vibrio caribbenthicus ATCC BAA-2122] gi|309369235|gb|EFP96756.1| hypothetical protein VIBC2010_07299 [Vibrio caribbenthicus ATCC BAA-2122] Length = 506 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 64/184 (34%), Gaps = 31/184 (16%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCST 71 + ++ + + +GT+I+++RK N+ T ++++ S +++ E G Sbjct: 1 MPVSKSLIRQSHFLGTKIRNLRKRNHLTMEDLSARCIRVNPENAPSVSYLSMIERGKRVP 60 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT------NKKRLDPYAIGAR------LK 119 SI + + ++ +W D E + N L+P + + + Sbjct: 61 SIDMLEVIADVFQKEPEWFLDDEPEQADIIPLKGNRGGINGIALEPSFLFSDDILQIAIP 120 Query: 120 SIRKDKGMSQIEFGKLL-----GMPNSTLSNYEQ-------GRTIPEIKPARKIKQVTKK 167 + G++ +F LL + + E+ R + I + Sbjct: 121 EMLSQTGITGRQFAHLLIRAHQEKNQNHFPDLERAAEDIGLKRLNLSTEDLINIAKTLGL 180 Query: 168 HLDW 171 + W Sbjct: 181 SVSW 184 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ +P I I V Sbjct: 12 HFLGTKIRNLRKRNHLTMEDLSARCIRVNPENAPSVSYLSMIERGKRVPSIDMLEVIADV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K +W D+ I KGN+ Sbjct: 72 FQKEPEWFL--DDEPEQADIIPLKGNR 96 >gi|290955836|ref|YP_003487018.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260645362|emb|CBG68448.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 210 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 29/79 (36%) Query: 13 SLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 S E T P + V +++ +R+ + T + A A + ++ E G S Sbjct: 2 SPSEGTHPPEPPADETLPAVAPQLRALRRRASLTLEAAARAAGLSPAHLSRLETGRRQPS 61 Query: 73 IRYALYLRNEYEISFDWIY 91 + L L Y + + Sbjct: 62 LPMLLTLARVYGTTVSELL 80 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ +L+++R+ ++ + G+ + LS E GR P + + +V + + Sbjct: 20 AVAPQLRALRRRASLTLEAAARAAGLSPAHLSRLETGRRQPSLPMLLTLARVYGTTVSEL 79 Query: 173 YFGDEVIVPKSIKRAKGNQSSK 194 G+ V ++ RA + ++ Sbjct: 80 L-GESVAERDAVLRATDTEPTR 100 >gi|254792649|ref|YP_003077486.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str. TW14359] gi|254592049|gb|ACT71410.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str. TW14359] Length = 200 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ + +RK+ N T E+A + ++ ++ E G S S L N I+ + Sbjct: 19 DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANALNITLSKL 78 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + ++ + Sbjct: 79 FAELEMQQNSLVLLADQQQHWIDEETGI 106 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 37/97 (38%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + R D K ++ I L +RK + ++ E + G+ + +S E+G + P Sbjct: 1 MKEGRRMDKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPS 60 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 ++ L ++ E+ + A Q Sbjct: 61 ATILSRLANALNITLSKLFAELEMQQNSLVLLADQQQ 97 >gi|227500542|ref|ZP_03930593.1| DNA-binding protein [Anaerococcus tetradius ATCC 35098] gi|227217354|gb|EEI82684.1| DNA-binding protein [Anaerococcus tetradius ATCC 35098] Length = 367 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 30/84 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I RK TQ+E+A +++V+ +E G I L + IS D + Sbjct: 3 KIGEIILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDEL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAI 114 + + L+ Sbjct: 63 IGYDPDLSSAQIQKFYIDLENRVP 86 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG + RK++G++Q E + + + +++S +E G++ P+I K+ +D Sbjct: 1 MLKIGEIILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + D + I++ Sbjct: 61 ELIGYDPDLSSAQIQK 76 >gi|332360152|gb|EGJ37966.1| transcription regulator [Streptococcus sanguinis SK1056] Length = 135 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQVLKDIRQQNQLTQETLAERLKVSRSAIARWESEKGIPDIGNLITISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQVLKDIRQQNQLTQETLAERLKVSRSAIARWESEKGIPDIGNLITISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|319757761|gb|ADV69703.1| transcriptional regulator [Streptococcus suis JS14] Length = 158 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +R+ ++ TQ E A ++++ +ENG + S + ++ +S Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 56 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+R+ ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLTP 69 >gi|310830237|ref|YP_003965337.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753143|gb|ADO44286.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 210 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 18 TLIITPEIRQYWKD-VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 T +I P R+ + R++ +RK T ++A+ + S ++ EN S + Sbjct: 9 TAMIPPAARRKAAHSIAARLRALRKEAGLTLSDLAMRSGLAASTLSKIENEQMSPTYDTI 68 Query: 77 LYLRNEYEISFDWIYDG 93 L L + + G Sbjct: 69 LSLAEGLGVDITHLVTG 85 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++I ARL+++RK+ G++ + G+ STLS E + P + + + Sbjct: 22 HSIAARLRALRKEAGLTLSDLAMRSGLAASTLSKIENEQMSPTYDTILSLAEGLGVDITH 81 Query: 172 IYFG 175 + G Sbjct: 82 LVTG 85 >gi|260426926|ref|ZP_05780905.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421418|gb|EEX14669.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 123 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 23/134 (17%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E G S + + ++S + + Sbjct: 9 VGKRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADALDVSVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +G ++ D + L + S + E R Sbjct: 69 EGLETEQDAPVSAAAMPSDILGDK------------------EALDLVRSYYAIPENQRR 110 Query: 152 IPEIKPARKIKQVT 165 ++ +V Sbjct: 111 R-----LFELARVL 119 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 25/72 (34%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R GM+Q + + +G+ + YE G I + + + G Sbjct: 11 KRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADALDVSVSFFFEG 70 Query: 176 DEVIVPKSIKRA 187 E + A Sbjct: 71 LETEQDAPVSAA 82 >gi|261208879|ref|ZP_05923316.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289566920|ref|ZP_06447326.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294616443|ref|ZP_06696230.1| transcriptional regulator, xre family [Enterococcus faecium E1636] gi|260077381|gb|EEW65101.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289161287|gb|EFD09181.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291590694|gb|EFF22416.1| transcriptional regulator, xre family [Enterococcus faecium E1636] Length = 221 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I+ R+ N TQKE+ + ++ +EN + L + D Sbjct: 2 NIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPID 59 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++++ R++ ++Q E G+ +G+ + T+S++E RT+P+++ + Q +D+ Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 172 --IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I E I P + S SK+ Sbjct: 61 PSIESATESIEPTLPDEPLVIKKSYSSKQ 89 >gi|213972069|ref|ZP_03400162.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato T1] gi|213923155|gb|EEB56757.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato T1] Length = 118 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 35/77 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ RKA+ Q ++A + ++ +E G+ + ++ + + L +IS + Sbjct: 8 IGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 67 Query: 92 DGEVIDRRYEDVTNKKR 108 + I E + + Sbjct: 68 PADGISSSREHLPKLRD 84 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +++ RK G +Q + +L+G T+S YE+G P + K+ K + D Sbjct: 12 VRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELLPADG 71 Query: 178 VIVPKSIKRAKGNQSSKK 195 + + +++ KK Sbjct: 72 ISSSREHLPKLRDEAVKK 89 >gi|134287382|ref|YP_001110765.1| putative repressor [Clostridium phage phiC2] gi|93117220|gb|ABE99510.1| putative repressor [Clostridium phage phiC2] Length = 131 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 33/77 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++R+ + +++ + +S ++ ENG+ N +++S D++ Sbjct: 2 NRIKELREEKGISLDKLSEDLHINKSTLSRIENGLREPKKSTIEEYANYFDVSTDYLLGR 61 Query: 94 EVIDRRYEDVTNKKRLD 110 + N+K D Sbjct: 62 TDVRNSLFINKNEKDYD 78 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +R++KG+S + + L + STLS E G P+ + D++ Sbjct: 1 MNRIKELREEKGISLDKLSEDLHINKSTLSRIENGLREPKKSTIEEYANYFDVSTDYLLG 60 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +V I + + + ++ K +K+ Sbjct: 61 RTDVRNSLFINKNEKDYDAENFKTEKE 87 >gi|154248612|ref|YP_001419570.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162697|gb|ABS69913.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 224 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 8/109 (7%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + +G +++ IR+ + T ++A A+ ++ ENG S S+ + Sbjct: 33 EAVTLEQALGVQVRSIRRELDLTVSDLAGAASISVGMLSKIENGQISPSLATLQAISKAL 92 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + ++ R V + + + R K Q E Sbjct: 93 NVPITTLFSAFEERRDCSFVRAHQGV--------IIERRGTKVGHQYEL 133 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +++SIR++ ++ + + LS E G+ P + + I + + ++ Sbjct: 44 QVRSIRRELDLTVSDLAGAASISVGMLSKIENGQISPSLATLQAISKALNVPITTLFSAF 103 Query: 177 EVIVPKSIKRA 187 E S RA Sbjct: 104 EERRDCSFVRA 114 >gi|260555242|ref|ZP_05827463.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260411784|gb|EEX05081.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 197 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 2/98 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+++R A T +A SA++L E G S + L N E Sbjct: 1 MDDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLE 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA--RLKS 120 + I+ E + + + + + ++ Sbjct: 61 VPLTQIFTNEAGNSSSQPLIRRNEQAEWRDPETGYIRR 98 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + + S +S E+G T P K+ + L I+ Sbjct: 10 HRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFTN 69 Query: 176 D 176 + Sbjct: 70 E 70 >gi|197105530|ref|YP_002130907.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196478950|gb|ACG78478.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 128 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ +RK +Q+ +A A + +E G S + + ++ Sbjct: 16 VGARIRLLRKLKGLSQQALAEAAGVTFQQIQKYERGANRVSASMLARIARTLGVPVAEMF 75 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 GE L LK+ Sbjct: 76 -GEASPTSSAVDEVAALLAEPGALELLKAY 104 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+GAR++ +RK KG+SQ + G+ + YE+G +I + + Sbjct: 15 AVGARIRLLRKLKGLSQQALAEAAGVTFQQIQKYERGANRVSASMLARIARTLGVPVAE- 73 Query: 173 YFGDEVIVPKSIKR 186 FG+ ++ Sbjct: 74 MFGEASPTSSAVDE 87 >gi|169349906|ref|ZP_02866844.1| hypothetical protein CLOSPI_00645 [Clostridium spiroforme DSM 1552] gi|169293474|gb|EDS75607.1| hypothetical protein CLOSPI_00645 [Clostridium spiroforme DSM 1552] Length = 114 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI +R N T++E+ + + +E G S++ L + +S D+I Sbjct: 6 GERISYLRCECNLTREELCKIIGVSKRTIVAYEQGTRDPSVKTLRALVEYFNVSSDYILG 65 Query: 93 GEVIDRRYEDVTNKKR 108 R + + +++ Sbjct: 66 YTNKPLRLDAICKEEK 81 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+ +R + +++ E K++G+ T+ YEQG P +K R + + D+I Sbjct: 7 ERISYLRCECNLTREELCKIIGVSKRTIVAYEQGTRDPSVKTLRALVEYFNVSSDYIL 64 >gi|163737289|ref|ZP_02144707.1| hypothetical protein RGBS107_04063 [Phaeobacter gallaeciensis BS107] gi|161389893|gb|EDQ14244.1| hypothetical protein RGBS107_04063 [Phaeobacter gallaeciensis BS107] Length = 140 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 13/131 (9%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + + +G R+ R TQ MA A + +E G + + + Sbjct: 1 MRQDAKSVFIAMGARLAIARNEVGLTQTAMAEAIGVSHRAYHSYEKGQRGLPVEALVAMS 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKR----LDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + +E+ WI G R D K+ LD + +K + +G Sbjct: 61 DRFEVDAAWILLGTQTVRASHDFEALKQIETSLDQHLNEENIKIKSEKRGAI-------- 112 Query: 137 GMPNSTLSNYE 147 + S+ E Sbjct: 113 -VARWYQSHLE 122 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 7/100 (7%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A+GARL R + G++Q + +G+ + +YE+G+ ++ + + Sbjct: 9 FIAMGARLAIARNEVGLTQTAMAEAIGVSHRAYHSYEKGQRGLPVEALVAMSDRFEVDAA 68 Query: 171 WIYFGDEVIVP-------KSIKRAKGNQSSKKSKKDKKSS 203 WI G + + K I+ + ++++ K K Sbjct: 69 WILLGTQTVRASHDFEALKQIETSLDQHLNEENIKIKSEK 108 >gi|156934250|ref|YP_001438166.1| DNA-binding transcriptional repressor PuuR [Cronobacter sakazakii ATCC BAA-894] gi|156532504|gb|ABU77330.1| hypothetical protein ESA_02080 [Cronobacter sakazakii ATCC BAA-894] Length = 185 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR+ +Q+ +A + SA++ E S +I L Y +S + Sbjct: 9 GKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + V N++ L Sbjct: 69 EPEKPDEPQVVINQEDL 85 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 66 FFAEPEKPDEPQV 78 >gi|134298741|ref|YP_001112237.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051441|gb|ABO49412.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 77 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK++R+ +Q ++A S + E G S SI + N+ ++S + Sbjct: 6 QLGHKIKNLREKKGLSQVQLAHMVGVTNSLICKIETGQTSGSIHTLKKIANKLDVSVNIF 65 Query: 91 YDGEV 95 ++ + Sbjct: 66 FEDDS 70 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++R+ KG+SQ++ ++G+ NS + E G+T I +KI ++ I+F Sbjct: 9 HKIKNLREKKGLSQVQLAHMVGVTNSLICKIETGQTSGSIHTLKKIANKLDVSVN-IFFE 67 Query: 176 DEVIVP 181 D+ V Sbjct: 68 DDSSVK 73 >gi|331090843|ref|ZP_08339689.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399702|gb|EGG79364.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium 2_1_46FAA] Length = 179 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K +R A N TQ+E+A A + ++ E + S SI + + S Sbjct: 2 QIGQKLKGLRIAKNLTQEELADRAELSKGFISQLERDLTSPSISTLVDILQCLGTSLKDF 61 Query: 91 YDGEVIDRRYEDVTNK 106 + E ++ + Sbjct: 62 FQEESDEQIVFGNEDY 77 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL-- 169 IG +LK +R K ++Q E + +S E+ T P I I Q L Sbjct: 1 MQIGQKLKGLRIAKNLTQEELADRAELSKGFISQLERDLTSPSISTLVDILQCLGTSLKD 60 Query: 170 -------DWIYFGDEVIVPKSIKRAKG 189 + I FG+E K K Sbjct: 61 FFQEESDEQIVFGNEDYFEKVDTELKN 87 >gi|312868590|ref|ZP_07728785.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095887|gb|EFQ54136.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 238 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 RIK++R A +KTQ ++A N + ++ +E G I + + +S ++ Sbjct: 23 NRIKELRMAQHKTQLDLAKKMNVTDRTISNWEKGKREPKIEAWKKMAQYFGVSVSYL 79 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K +R + +Q++ K + + + T+SN+E+G+ P+I+ +K+ Q + ++ Sbjct: 21 NNNRIKELRMAQHKTQLDLAKKMNVTDRTISNWEKGKREPKIEAWKKMAQYFGVSVSYLQ 80 Query: 174 FGDEVIVPK---SIKRAKGNQSSKKSKKDKKSSN 204 D+ +I A N + ++ K+ +KS N Sbjct: 81 GLDDNKDGSWIGTINLASKNLNKQQPKQIEKSIN 114 >gi|307330189|ref|ZP_07609338.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884209|gb|EFN15246.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 190 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ Q + + +K R T +A A + E + S+ + L + Sbjct: 3 DLDQLTQSLARNLKRCRNERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADAL 62 Query: 84 EISFDWIYDGE 94 +S + D E Sbjct: 63 GVSITTLLDYE 73 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 20/58 (34%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK R ++G + G+ + EQ RT P + K+ + + Sbjct: 13 RNLKRCRNERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLL 70 >gi|295101168|emb|CBK98713.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 210 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K RK +Q E+A + AV +E+G S + + D++ Sbjct: 7 LKQCRKQKGISQAELASKLGVTQQAVGKWESGKSSPDPATVARIAEILSTTADFLL 62 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK RK KG+SQ E LG+ + +E G++ P+ +I ++ D+ Sbjct: 1 MSFSELLKQCRKQKGISQAELASKLGVTQQAVGKWESGKSSPDPATVARIAEILSTTADF 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|296101665|ref|YP_003611811.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056124|gb|ADF60862.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 256 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 1/86 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R TQK + ++A+ E G + + + + L N ++ +W+ Sbjct: 27 LAERLKEARTLRGLTQKALGDLVGVSQAAIQKIETGKANQTTK-LVELANALKVKPEWLS 85 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 GE D + Sbjct: 86 SGEGAMLLTGQDEAIPPSDQWGTVEP 111 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 1/86 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + + RLK R +G++Q G L+G+ + + E G+ Sbjct: 4 FSQQPFSFDGIKPWLYIARMKTTLAERLKEARTLRGLTQKALGDLVGVSQAAIQKIETGK 63 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGD 176 K ++ K +W+ G+ Sbjct: 64 ANQTTK-LVELANALKVKPEWLSSGE 88 >gi|291556477|emb|CBL33594.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Eubacterium siraeum V10Sc8a] Length = 122 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G +K +RK TQ+E+A N+ S ++ +E + S + + +S D++ Sbjct: 6 DFGLILKGLRKEKGWTQEELANKINKESSIISRYEKNLQSPTFDTVRAFSALFNVSMDYL 65 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 E N+K+ + ++ R+ ++ + Sbjct: 66 SGMERQSNISTIGLNEKQRNII--MQLIQQFREHNVITSKQLTDK 108 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D + G LK +RK+KG +Q E + +S +S YE+ P R + + Sbjct: 3 DAFDFGLILKGLRKEKGWTQEELANKINKESSIISRYEKNLQSPTFDTVRAFSALFNVSM 62 Query: 170 DWI 172 D++ Sbjct: 63 DYL 65 >gi|119962079|ref|YP_946843.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119948938|gb|ABM07849.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 191 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 41/109 (37%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + E +G+RI+ R+A T +++A + ++ E + S S+ + L Sbjct: 3 ALPVEPSNIPVAIGSRIRAARQAQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTL 62 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +S ++ D + L I RL + R ++ + Sbjct: 63 CQVLSVSVGDLFAAPETHLTKRDDGPRISLGGQGIVERLLTARSERRLQ 111 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG+R+++ R+ + ++ + G+ LS E+ T P + + QV + + Sbjct: 14 AIGSRIRAARQAQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLSVSVGDL 73 Query: 173 YFGDEVIVPKS 183 + E + K Sbjct: 74 FAAPETHLTKR 84 >gi|227357946|ref|ZP_03842289.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|6453635|emb|CAB61440.1| mrpJ [Proteus mirabilis HI4320] gi|227161855|gb|EEI46884.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 107 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ RK T ++A + + +E GM +R+ + L W + Sbjct: 16 VGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVLLALYLNTPIYWFF 75 Query: 92 DG 93 + Sbjct: 76 ED 77 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ RK+ G + ++ K +G+ S YE+G +++ + + W + Sbjct: 18 KKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVLLALYLNTPIYWFF-- 75 Query: 176 DEVIVPKSIKRAKG 189 ++ V K KG Sbjct: 76 EDCYVKKPSLNNKG 89 >gi|16519699|ref|NP_443819.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] gi|2495432|sp|P55409|Y4DJ_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4dJ gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a gi|2182353|gb|AAB91639.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] Length = 77 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 K VG+ +R+ TQ+E+ + + ++ E G + ++ L +S Sbjct: 4 RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVS 61 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R++KG++Q E G LS+ E+GR P + ++ Q + + Sbjct: 13 RLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHVELVTPTDET 72 >gi|319646362|ref|ZP_08000592.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] gi|317392112|gb|EFV72909.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 82 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 32 VGTRIKDIRKANN--KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G R+K +R +Q+ ++ S +E G + + + + Y++S D+ Sbjct: 3 LGERLKMLRNKQKPKLSQETLSEELGINRSTYARYETGDNDPGYKTLIKIADFYKVSLDY 62 Query: 90 IYDG 93 + G Sbjct: 63 LIQG 66 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 112 YAIGARLKSIRKDKG--MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +G RLK +R + +SQ + LG+ ST + YE G P K KI K L Sbjct: 1 MTLGERLKMLRNKQKPKLSQETLSEELGINRSTYARYETGDNDPGYKTLIKIADFYKVSL 60 Query: 170 DWIYFG 175 D++ G Sbjct: 61 DYLIQG 66 >gi|319782137|ref|YP_004141613.1| hypothetical protein Mesci_2417 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168025|gb|ADV11563.1| Protein of unknown function DUF2083,transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 480 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR A TQ MA G S +NL E +++ L L + Y++ + Sbjct: 9 GPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILRLASVYKVDPHEL 66 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR KG++Q + LG+ S L+ E+ + ++ ++ V K + Sbjct: 12 IRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILRLASVYKVDPHEL 66 >gi|315174882|gb|EFU18899.1| helix-turn-helix protein [Enterococcus faecalis TX1346] Length = 232 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 115 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD 176 +DW+ +GD Sbjct: 61 DTTVDWLLYGD 71 >gi|256025208|ref|ZP_05439073.1| hypothetical protein E4_17688 [Escherichia sp. 4_1_40B] gi|301325184|ref|ZP_07218708.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|300847945|gb|EFK75705.1| helix-turn-helix protein [Escherichia coli MS 78-1] Length = 185 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 34/111 (30%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L N Sbjct: 33 KKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALS 92 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + ++ D L S R + + Sbjct: 93 VEPWQLLAPGPSEDNDSELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQK 143 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 5/95 (5%) Query: 75 YALYLRNEYEISFD--WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 L E+ D ++ + + K+ G R+K +R G+SQ F Sbjct: 2 LVTKLA---EVRLDSKYLIWSVALQWSKLHIQCMKKSLRIQFGERVKELRIATGLSQEAF 58 Query: 133 GKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 G S +S E+G + + + Sbjct: 59 ADRCGFARSYMSRIERGGSNASLDAIEVLANALSV 93 >gi|188590232|ref|YP_001921142.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] gi|188500513|gb|ACD53649.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] Length = 134 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 48/126 (38%), Gaps = 3/126 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIKD+RK+ TQ ++ ++ ++++ENG + + + ++++ D++ Sbjct: 4 LADRIKDLRKSKKLTQTDLGRILGVGKTTISMYENGNSTPNDEIKFKIAAFFDVTLDYLL 63 Query: 92 DG---EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + D + ++ ++ S+ E K + + S E Sbjct: 64 GKSDIKKYDDVLSIDKQDNTQNTPIEDKLIEKLKNLDDESKKELEKYMDLLKLKESMGES 123 Query: 149 GRTIPE 154 P Sbjct: 124 KNETPS 129 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 44/91 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + + R+K +RK K ++Q + G++LG+ +T+S YE G + P + KI LD Sbjct: 1 MFTLADRIKDLRKSKKLTQTDLGRILGVGKTTISMYENGNSTPNDEIKFKIAAFFDVTLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 ++ ++ + +++ + + K Sbjct: 61 YLLGKSDIKKYDDVLSIDKQDNTQNTPIEDK 91 >gi|167772022|ref|ZP_02444075.1| hypothetical protein ANACOL_03396 [Anaerotruncus colihominis DSM 17241] gi|167665820|gb|EDS09950.1| hypothetical protein ANACOL_03396 [Anaerotruncus colihominis DSM 17241] Length = 79 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ D+R ++ TQK+++ + +E G + L Y+ S D+I Sbjct: 7 RRLYDLRIDHDLTQKDVSTYLGMSQPQYYRYERGYRDIPTHVLIALAKLYDTSVDYILGL 66 Query: 94 EVIDRRYED 102 + + + Sbjct: 67 TDDPQPHRE 75 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 25/70 (35%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL +R D ++Q + LGM YE+G + ++ +D+I Sbjct: 5 YYRRLYDLRIDHDLTQKDVSTYLGMSQPQYYRYERGYRDIPTHVLIALAKLYDTSVDYIL 64 Query: 174 FGDEVIVPKS 183 + P Sbjct: 65 GLTDDPQPHR 74 >gi|159045029|ref|YP_001533823.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12] gi|157912789|gb|ABV94222.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12] Length = 467 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ N+TQ EMA S VN+ E S S+ L L Y + + I Sbjct: 5 IGPRLRRLRRDANQTQAEMAKALGISNSYVNMLEKNERSVSVPVLLRLFEAYGVDWRDIA 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 D + + + L +R Sbjct: 65 DEDDTATLNALRAAFQDPLFHDHSPDLPQLR 95 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R+D +Q E K LG+ NS ++ E+ + ++ + I D+ Sbjct: 9 LRRLRRDANQTQAEMAKALGISNSYVNMLEKNERSVSVPVLLRLFEAYGVDWRDIADEDD 68 Query: 178 VIVPKSIKRA 187 +++ A Sbjct: 69 TATLNALRAA 78 >gi|323486113|ref|ZP_08091444.1| hypothetical protein HMPREF9474_03195 [Clostridium symbiosum WAL-14163] gi|323400680|gb|EGA93047.1| hypothetical protein HMPREF9474_03195 [Clostridium symbiosum WAL-14163] Length = 86 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+ KG++Q + G+++G ++ E + P I A I Q+ ++ ++ Sbjct: 1 MKNRIRELREQKGLTQEQLGEMVGASRQAINAIETEKFEPSIWLAYDISQIFGCSIEEVF 60 Query: 174 FGDEVIVPKSIKRAKGNQ 191 E R++G Sbjct: 61 LFAESQKKSRADRSRGEN 78 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+++R+ TQ+++ A+N E SI A + + S + ++ Sbjct: 3 NRIRELREQKGLTQEQLGEMVGASRQAINAIETEKFEPSIWLAYDISQIFGCSIEEVF 60 >gi|322378078|ref|ZP_08052565.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334] gi|321281060|gb|EFX58073.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334] Length = 108 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 45/107 (42%), Gaps = 1/107 (0%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +++ +I+D+R + TQ+E+A N ++ EN + S+ + + + E Sbjct: 1 MDDILENISNQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALE 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQI 130 ++ + + + E + ++ + + + + +SQ Sbjct: 61 VTLSDFFLPYSVPQDTEMMELLLKIQRHPQHKMIVHKVMEILELSQD 107 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R K ++Q E + + +S E ++ KI + L + Sbjct: 10 NQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEVTLSDFF 67 >gi|295106009|emb|CBL03552.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 153 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 27/67 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + +R+ N TQ+++A AV+ +E G + + +++ + Sbjct: 3 IGESLARMRRERNLTQEDVARRLYVTRQAVSRWETGETEPGVDMCKLIAATFDMPLMELL 62 Query: 92 DGEVIDR 98 + D Sbjct: 63 EMPDKDY 69 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG L +R+++ ++Q + + L + +S +E G T P + + I L Sbjct: 1 MAIGESLARMRRERNLTQEDVARRLYVTRQAVSRWETGETEPGVDMCKLIAATFDMPLME 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|284008333|emb|CBA74709.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 230 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + RIK R A TQ E+A + +V +E + + + +I+ + Sbjct: 1 MKTMHERIKQARLAKKMTQAELAEKLSVTPQSVQQWET-STEPKKNRLMKIADVLDINVN 59 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 W+ GE ++ Sbjct: 60 WLLFGEKKNKDGRLKNKMNF 79 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+K R K M+Q E + L + ++ +E T P+ KI V +++ Sbjct: 1 MKTMHERIKQARLAKKMTQAELAEKLSVTPQSVQQWETS-TEPKKNRLMKIADVLDINVN 59 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 W+ FG++ +K + + Sbjct: 60 WLLFGEKKNKDGRLKNKMNFREISE 84 >gi|253700937|ref|YP_003022126.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251775787|gb|ACT18368.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 188 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK +R A T + +A + ++ EN S I + +++ Sbjct: 6 NIGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQF 65 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + +R++E V +R Sbjct: 66 FSEDEDNRKFEVVRADQR 83 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y IG R+K +R + ++ G + +S E P I KI + L Sbjct: 5 YNIGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQ 64 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + DE + RA Sbjct: 65 FFSEDEDNRKFEVVRADQR 83 >gi|88855827|ref|ZP_01130490.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] gi|88815151|gb|EAR25010.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] Length = 201 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + +G R+K+ R+A T ++A A V E G + S+ L L Sbjct: 1 MDEPTELLARTIGARVKNERQARKLTLDQLAENAGVSRRMVINVEQGAANPSVGTLLRLS 60 Query: 81 NEYEISFDWIYD 92 +S + + Sbjct: 61 EALGVSLPALVE 72 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + L IGAR+K+ R+ + ++ + + G+ + N EQG P + ++ Sbjct: 1 MDEPTELLARTIGARVKNERQARKLTLDQLAENAGVSRRMVINVEQGAANPSVGTLLRLS 60 Query: 163 QVTKKHL 169 + L Sbjct: 61 EALGVSL 67 >gi|330468607|ref|YP_004406350.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811578|gb|AEB45750.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 77 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 115 GARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R M+Q + + +G+ T+ EQGR P ++ A +I +V LD ++ Sbjct: 8 TNNIRALRFAHDEMTQADLAERVGVTRQTVIAIEQGRYSPSLEMAFRIARVFGVRLDDVF 67 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V I+ +R A++ TQ ++A V E G S S+ A + + + D + Sbjct: 7 VTNNIRALRFAHDEMTQADLAERVGVTRQTVIAIEQGRYSPSLEMAFRIARVFGVRLDDV 66 Query: 91 YDGEVIDR 98 + + Sbjct: 67 FQYPDTEE 74 >gi|255971326|ref|ZP_05421912.1| predicted protein [Enterococcus faecalis T1] gi|256617744|ref|ZP_05474590.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256959999|ref|ZP_05564170.1| predicted protein [Enterococcus faecalis Merz96] gi|257083788|ref|ZP_05578149.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257089285|ref|ZP_05583646.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|255962344|gb|EET94820.1| predicted protein [Enterococcus faecalis T1] gi|256597271|gb|EEU16447.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256950495|gb|EEU67127.1| predicted protein [Enterococcus faecalis Merz96] gi|256991818|gb|EEU79120.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256998097|gb|EEU84617.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] Length = 250 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 133 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYE 147 +I Y+ + K + +GAR++ RK K + +G+ + ST+SN+E Sbjct: 2 YILRTPYPHIYYKRSVSMK-ITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWE 60 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 G +P + +KI + +DW+ +GD Sbjct: 61 LGLNLPNKRYLKKIAKACDTTVDWLLYGD 89 >gi|228907010|ref|ZP_04070876.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 200] gi|228852624|gb|EEM97412.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 200] Length = 107 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + + Q + Sbjct: 62 LHDEKTKETNLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQ 106 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGDEV 178 + ++ Sbjct: 61 LLHDEKT 67 >gi|288573116|ref|ZP_06391473.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568857|gb|EFC90414.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 234 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R++ +RK TQ E+A + ++ V+ EN SI L + S ++ Sbjct: 4 GERLRRVRKDQGLTQTELARLSGVKQNTVSQVENDRIGLSIETWESLASVLGCSVGYLVS 63 Query: 93 GEVIDRR 99 GE + Sbjct: 64 GEGDRKS 70 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RL+ +RKD+G++Q E +L G+ +T+S E R I+ + V + + Sbjct: 1 MTRGERLRRVRKDQGLTQTELARLSGVKQNTVSQVENDRIGLSIETWESLASVLGCSVGY 60 Query: 172 IYFGD 176 + G+ Sbjct: 61 LVSGE 65 >gi|169796192|ref|YP_001713985.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|213157074|ref|YP_002319119.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215483646|ref|YP_002325867.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|301347624|ref|ZP_07228365.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056] gi|301510309|ref|ZP_07235546.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058] gi|301596869|ref|ZP_07241877.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059] gi|332850551|ref|ZP_08432827.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332865761|ref|ZP_08436556.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|169149119|emb|CAM86996.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|213056234|gb|ACJ41136.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213985862|gb|ACJ56161.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|332730613|gb|EGJ61927.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332735102|gb|EGJ66186.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 197 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 2/98 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+++R A T +A SA++L E G S + L N E Sbjct: 1 MDDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLE 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA--RLKS 120 + I+ E + + + + + ++ Sbjct: 61 VPLTQIFTNEAGNSSSQPLIRRNEQAEWRDPETGYIRR 98 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + + S +S E+G T P K+ + L I+ Sbjct: 10 HRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFTN 69 Query: 176 D 176 + Sbjct: 70 E 70 >gi|206976223|ref|ZP_03237132.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97] gi|206745677|gb|EDZ57075.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97] Length = 119 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K VG I+ +RK TQ+E+A N ++ + E G + S+ + + E+S Sbjct: 3 DFLKLVGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIADGLEVS 62 Query: 87 FD 88 D Sbjct: 63 PD 64 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ +RK +G++Q E + + + + + E+G + +KI + D Sbjct: 10 ENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIADGLEVSPD 64 >gi|50914083|ref|YP_060055.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|50903157|gb|AAT86872.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 281 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 6/142 (4%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIR------QYWKDVGTRIKDIRKANNKTQKEMAIGA 54 M+L F LK++ L + +R Q ++ IK RK N TQKE+A Sbjct: 1 MYLKVFFCILLKNIVFIPLEVYNIVRHIIVKEQKMANLSDNIKYFRKQNKLTQKELAKKL 60 Query: 55 NQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAI 114 +A++ +E G + + + + I + E+ + I Sbjct: 61 KIAPTAISAWEVGRNKPLMDNIEQMTSIFGIPKSKLLGDEIYKIQETASPELIPSTLQKI 120 Query: 115 GARLKSIRKDKGMSQIEFGKLL 136 A + + + ++ + L Sbjct: 121 TATSSQLEHSRQLIVLDTAETL 142 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 5/113 (4%) Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 +YL+ + I I + K + +K RK ++Q E K L Sbjct: 1 MYLKVFFCILLKNIVFIPLEVYNIVRHIIVKEQKMANLSDNIKYFRKQNKLTQKELAKKL 60 Query: 137 GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL-----DWIYFGDEVIVPKSI 184 + + +S +E GR P + ++ + D IY E P+ I Sbjct: 61 KIAPTAISAWEVGRNKPLMDNIEQMTSIFGIPKSKLLGDEIYKIQETASPELI 113 >gi|172057104|ref|YP_001813564.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989625|gb|ACB60547.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 395 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RKA TQ ++A G +S +++ EN + S+ + + +S D + Sbjct: 2 LGQRIKSLRKAKKLTQSDVADGI-MTKSMLSMIENEKATPSLPALQSIAHRLHVSIDALL 60 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+KS+RK K ++Q + + M S LS E + P + + I +D + Sbjct: 1 MLGQRIKSLRKAKKLTQSDVADGI-MTKSMLSMIENEKATPSLPALQSIAHRLHVSIDAL 59 Query: 173 YFGDE-VIVPKSIKRAKGNQS 192 V + + I++ S Sbjct: 60 LIDPRAVEMKQMIEKINSTAS 80 >gi|332559101|ref|ZP_08413423.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332276813|gb|EGJ22128.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 211 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ IRK + ++ + ++ E G+ S+R + + W+ Sbjct: 7 IGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLL 66 Query: 92 D 92 + Sbjct: 67 E 67 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ IRK+ +S + G+ TLS E+G P ++ +I Q W+ Sbjct: 9 QRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLLEM 68 Query: 176 DEVIVPK 182 + P+ Sbjct: 69 PDQHNPE 75 >gi|328950250|ref|YP_004367585.1| helix-turn-helix domain protein [Marinithermus hydrothermalis DSM 14884] gi|328450574|gb|AEB11475.1| helix-turn-helix domain protein [Marinithermus hydrothermalis DSM 14884] Length = 130 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++++RK K+++ + ++ E G + S+ L Y IS + Sbjct: 3 LAERLRELRKDRGWRLKDLSQASGLSIPYLSDLERGRTNPSLETLQTLSRAYGISVHDLL 62 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL+ +RKD+G + + G+ LS+ E+GRT P ++ + + + + Sbjct: 1 MTLAERLRELRKDRGWRLKDLSQASGLSIPYLSDLERGRTNPSLETLQTLSRAYGISVHD 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|253575334|ref|ZP_04852672.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845331|gb|EES73341.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 8/109 (7%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFD 88 + +G RI+ +R+ + E+A A+ +S ++ E + SI + + + +S + Sbjct: 3 EHIGERIQKLRQDRGYSLSELAEKADVAKSYLSNVERNIQSNPSISFIEKIADALNVSIN 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLK-------SIRKDKGMSQI 130 + G+ D + + K +K K Q Sbjct: 63 LLLYGDRPAPELLDPEWSELVQEAMTSGVSKKEFKEFLEYQKWKRGQQE 111 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R++ +R+D+G S E + + S LSN E+ ++ P I KI ++ Sbjct: 4 HIGERIQKLRQDRGYSLSELAEKADVAKSYLSNVERNIQSNPSISFIEKIADALNVSINL 63 Query: 172 IYFGD----EVIVPKSIKRAKGNQSSKKSKKDKKS 202 + +GD E++ P+ + + +S SKK+ K Sbjct: 64 LLYGDRPAPELLDPEWSELVQEAMTSGVSKKEFKE 98 >gi|228968306|ref|ZP_04129303.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] gi|228791383|gb|EEM38988.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 42/107 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R +N +QKE+ A + AV+ +E G+ + + + ++I I Sbjct: 3 IGKNIKKLRSKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGAIQKIADHFKILKSDII 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + + + K + L +I + + + + + Sbjct: 63 EDQDSKITHIRPNQPKIENNCKAVPLLGAIAAGTPLEMLTVEEWINV 109 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +IG +K +R +SQ E G++ G+ + +S +E+G P + +KI K Sbjct: 1 MSIGKNIKKLRSKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGAIQKIADHFKI 56 >gi|222086392|ref|YP_002544926.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221723840|gb|ACM26996.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 200 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 33/81 (40%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 L++ + ++ K +GTRI+ R++ + E+A + + ++ E G S Sbjct: 2 LRAKLSTIVACMSQLDSVDKRIGTRIRIERESRGWSLTELAERSAVSRAMIHKIERGDSS 61 Query: 71 TSIRYALYLRNEYEISFDWIY 91 + L + +S + Sbjct: 62 PTATLLGKLSGAFGLSMSTLM 82 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 27/71 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ R+ +G S E + + + + E+G + P K+ + + E Sbjct: 27 IRIERESRGWSLTELAERSAVSRAMIHKIERGDSSPTATLLGKLSGAFGLSMSTLMARAE 86 Query: 178 VIVPKSIKRAK 188 + + +++ Sbjct: 87 MHQGRLLRKGD 97 >gi|221640096|ref|YP_002526358.1| XRE family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221160877|gb|ACM01857.1| Transcriptional regulator, XRE family [Rhodobacter sphaeroides KD131] Length = 211 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ IRK + ++ + ++ E G+ S+R + + W+ Sbjct: 7 IGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLL 66 Query: 92 D 92 + Sbjct: 67 E 67 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ IRK+ +S + G+ TLS E+G P ++ +I Q W+ Sbjct: 9 QRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLLEM 68 Query: 176 DEVIVPK 182 + P+ Sbjct: 69 PDQHNPE 75 >gi|171056856|ref|YP_001789205.1| XRE family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774301|gb|ACB32440.1| transcriptional regulator, XRE family [Leptothrix cholodnii SP-6] Length = 200 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + VG IK+ R+ + T +++ A+ ++ ENG S + + +S Sbjct: 12 LEESVGAAIKEQRQRHGLTIAQVSEQASISRGMLSKIENGQTSAGMDTLARIARALGVSM 71 Query: 88 DWIY 91 ++ Sbjct: 72 SMLF 75 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R+ G++ + + + LS E G+T + +I + + ++ + Sbjct: 20 IKEQRQRHGLTIAQVSEQASISRGMLSKIENGQTSAGMDTLARIARALGVSMSMLFSKYD 79 Query: 178 VIVPK--SIKRAKGNQSSKKSKKDKKS 202 V IK+ G + ++ K+ + Sbjct: 80 VTASSAQHIKKGMGMEVVRRGTKNGHT 106 >gi|77464212|ref|YP_353716.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126463054|ref|YP_001044168.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|77388630|gb|ABA79815.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126104718|gb|ABN77396.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] Length = 211 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ IRK + ++ + ++ E G+ S+R + + W+ Sbjct: 7 IGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLL 66 Query: 92 D 92 + Sbjct: 67 E 67 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ IRK+ +S + G+ TLS E+G P ++ +I Q W+ Sbjct: 9 QRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLLEM 68 Query: 176 DEVIVPK 182 + P+ Sbjct: 69 PDQHNPE 75 >gi|320326795|gb|EFW82833.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882738|gb|EGH16887.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 118 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 35/77 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ RKA+ Q ++A + ++ +E G+ + ++ + + L +IS + Sbjct: 8 IGVRVRAFRKAHGFNQDQLAKLVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 67 Query: 92 DGEVIDRRYEDVTNKKR 108 + I E + + Sbjct: 68 PADGISSSREHLPKLRD 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +++ RK G +Q + KL+G T+S YE+G P + K+ K + D Sbjct: 12 VRAFRKAHGFNQDQLAKLVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELLPADG 71 Query: 178 VIVPKSIKRAKGNQSSKK 195 + + +++ KK Sbjct: 72 ISSSREHLPKLRDEAVKK 89 >gi|251790166|ref|YP_003004887.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538787|gb|ACT07408.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 76 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R +Q+ A + ++ E G+ + ++ L ++ Sbjct: 11 LGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILAAGLHTDLTTLF 70 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K++R G+SQ F + G+ + +S E+G P ++ + L ++ Sbjct: 13 QRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILAAGLHTDLTTLF 70 >gi|240948773|ref|ZP_04753145.1| phage repressor [Actinobacillus minor NM305] gi|240296989|gb|EER47567.1| phage repressor [Actinobacillus minor NM305] Length = 218 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G RI++ RK TQK++A A++ +E+ + L L + Sbjct: 3 NQTLGDRIRNRRKELKLTQKDLATALKGVSHVAISQWESNTTKPNAENILDLSTVLQCEI 62 Query: 88 DWIYDGEVIDR 98 W+ G Sbjct: 63 SWLLRGNGESN 73 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + +G R+++ RK+ ++Q + L G+ + +S +E T P + + V + Sbjct: 1 MSNQTLGDRIRNRRKELKLTQKDLATALKGVSHVAISQWESNTTKPNAENILDLSTVLQC 60 Query: 168 HLDWIYF--GDEVIVPKSI 184 + W+ G+ +VP SI Sbjct: 61 EISWLLRGNGESNVVPASI 79 >gi|229084781|ref|ZP_04217041.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] gi|228698528|gb|EEL51253.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] Length = 181 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +I+ RKA + KE+A A S ++ E G + SI+ L ++ + Sbjct: 5 DIGKKIEKQRKAKGLSSKELANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D +K++ Sbjct: 65 LLEETNTDDLIVRSNKRKKM 84 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK KG+S E + + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKIEKQRKAKGLSSKELANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 + ++ K + Sbjct: 61 TFSFLLEETNTDDLIVRSNKRKK 83 >gi|256761630|ref|ZP_05502210.1| predicted protein [Enterococcus faecalis T3] gi|256682881|gb|EEU22576.1| predicted protein [Enterococcus faecalis T3] Length = 250 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 133 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYE 147 +I + + K + +GAR++ RK K + +G+ + ST+SN+E Sbjct: 2 YILRTPYPHIYSKRSVSMK-ITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWE 60 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 G +P + +KI + +DW+ +GD Sbjct: 61 LGLNLPNKRYLKKIAKACDTTVDWLLYGD 89 >gi|222098975|ref|YP_002533543.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] gi|221571365|gb|ACM22177.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] Length = 188 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R + TQ+E+A + S ++ E+ S SI + + Sbjct: 15 IGEKLKKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 74 Query: 92 DGEVIDRRYEDVTNKKRL 109 +R + + Sbjct: 75 SDFEEERVVFKKEERVPV 92 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + IG +LK +R +G++Q E + + S +S E +T P I +I + L Sbjct: 11 NFVRIGEKLKKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDL 70 Query: 170 DWIY--FGDEVIVPKSIKR 186 + F +E +V K +R Sbjct: 71 KHFFSDFEEERVVFKKEER 89 >gi|170697248|ref|ZP_02888342.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170137868|gb|EDT06102.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 73 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G ++ +R+A +Q+++A A S V E G SI A + ++ Sbjct: 1 MSDLIQHFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFD 60 Query: 85 ISFDWIYDG 93 +S + G Sbjct: 61 VSISTLLPG 69 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GA ++ +R+ + SQ + + G+ S + E+G I I A KI + + + Sbjct: 7 HFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTL 66 Query: 173 YFG 175 G Sbjct: 67 LPG 69 >gi|170729064|ref|YP_001763090.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814411|gb|ACA88995.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 77 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + TQ ++A + VN E G S+ A L ++ + I+D Sbjct: 3 NRLKVLRAEQDWTQADLAEKLDVSRQTVNAIEKGKYDPSLPLAFKLARLFDTPIEAIFDD 62 Query: 94 EVIDRRYEDV 103 EV + + Sbjct: 63 EVRIDSDKSM 72 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + + L + T++ E+G+ P + A K+ ++ ++ I+ Sbjct: 1 MKNRLKVLRAEQDWTQADLAEKLDVSRQTVNAIEKGKYDPSLPLAFKLARLFDTPIEAIF 60 Query: 174 FGDEVIVPKS 183 DEV + Sbjct: 61 -DDEVRIDSD 69 >gi|16802775|ref|NP_464260.1| hypothetical protein lmo0733 [Listeria monocytogenes EGD-e] gi|47095298|ref|ZP_00232909.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|224499603|ref|ZP_03667952.1| hypothetical protein LmonF1_07864 [Listeria monocytogenes Finland 1988] gi|224501962|ref|ZP_03670269.1| hypothetical protein LmonFR_05517 [Listeria monocytogenes FSL R2-561] gi|254828817|ref|ZP_05233504.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|254830277|ref|ZP_05234932.1| hypothetical protein Lmon1_02912 [Listeria monocytogenes 10403S] gi|254900031|ref|ZP_05259955.1| hypothetical protein LmonJ_09460 [Listeria monocytogenes J0161] gi|254911416|ref|ZP_05261428.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935743|ref|ZP_05267440.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255028966|ref|ZP_05300917.1| hypothetical protein LmonL_06926 [Listeria monocytogenes LO28] gi|284801064|ref|YP_003412929.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284994206|ref|YP_003415974.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|16410122|emb|CAC98811.1| lmo0733 [Listeria monocytogenes EGD-e] gi|47016369|gb|EAL07291.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|258601229|gb|EEW14554.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258608327|gb|EEW20935.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056626|gb|ADB67567.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284059673|gb|ADB70612.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|293589357|gb|EFF97691.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 169 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKS 183 G+ V+V K Sbjct: 61 L-GETVMVSKV 70 >gi|238027937|ref|YP_002912168.1| hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1] gi|237877131|gb|ACR29464.1| Hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1] Length = 125 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 3/110 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +G R+ +R+A TQ +A + +V+ E+G + SI + + + Sbjct: 10 AKEMVQGIGQRLAAVRRARGWTQAVLADKLGLEKESVSRLESGKVAISIERLVMFCDVLD 69 Query: 85 ISFDWIYDG---EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 + + I D + + K L P LKS + + E Sbjct: 70 VPIEEILTSASVHPTDEARTLIASLKGLAPAQRAIVLKSAHHLASLLKKE 119 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL ++R+ +G +Q LG+ ++S E G+ I+ V ++ I Sbjct: 19 QRLAAVRRARGWTQAVLADKLGLEKESVSRLESGKVAISIERLVMFCDVLDVPIEEILT 77 >gi|154484069|ref|ZP_02026517.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC 27560] gi|149735111|gb|EDM50997.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC 27560] Length = 177 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK++R TQ+E+A A + ++ E S SI + + Sbjct: 2 DIGKKIKELRILKGLTQEELADRAELTKGFISQVERNHTSPSIATLVDILQCLGTDLKNF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + ++ + + + ++ I Sbjct: 62 FEDDEDNQIVFSKEDYFEKEDKELKNMIQWI 92 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 32/86 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R KG++Q E + +S E+ T P I I Q L Sbjct: 1 MDIGKKIKELRILKGLTQEELADRAELTKGFISQVERNHTSPSIATLVDILQCLGTDLKN 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + DE K + K+ K Sbjct: 61 FFEDDEDNQIVFSKEDYFEKEDKELK 86 >gi|223932178|ref|ZP_03624182.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223899159|gb|EEF65516.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 158 Score = 68.4 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +R+ ++ TQ E A ++++ +ENG + S + ++ +S Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 56 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+R+ ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLTP 69 >gi|255973945|ref|ZP_05424531.1| predicted protein [Enterococcus faecalis T2] gi|255966817|gb|EET97439.1| predicted protein [Enterococcus faecalis T2] Length = 250 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 133 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYE 147 +I Y+ + K + +GAR++ RK K + +G+ + ST+SN+E Sbjct: 2 YILRTPYPHIYYKRSVSMK-ITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWE 60 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 G +P + +KI + +DW+ +GD Sbjct: 61 LGLNLPNKRYLKKIAKACDTTVDWLLYGD 89 >gi|237667134|ref|ZP_04527118.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] gi|237655482|gb|EEP53038.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 92 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K +R Q+++A N S +E G I+ + L Y++S D++ Sbjct: 4 DRLKYLRSEMELKQEDIADKLNVARSTYGNWELGRTEPDIKSLIELARFYKVSIDYL 60 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK +R + + Q + L + ST N+E GRT P+IK ++ + K +D++ Sbjct: 1 MLKDRLKYLRSEMELKQEDIADKLNVARSTYGNWELGRTEPDIKSLIELARFYKVSIDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSK 194 G+ + ++ + K Sbjct: 61 -CGNTDVKDMYVRDKRKCMYIK 81 >gi|219855544|ref|YP_002472666.1| hypothetical protein CKR_2201 [Clostridium kluyveri NBRC 12016] gi|219569268|dbj|BAH07252.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 375 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 32/91 (35%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I RK TQ+++A +++V+ +E+G+ I L + +S D + Sbjct: 13 IIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVSVDELLGYSP 72 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + + +L + + Sbjct: 73 QLTKKDIKKIYNKLSHEFATKSFDEVMEQCN 103 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + I + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MMDMRELNIRRCIIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYF 60 Query: 166 KKHLDWIYFGDEVIVPKSIKR 186 +D + + K IK+ Sbjct: 61 NVSVDELLGYSPQLTKKDIKK 81 >gi|153955107|ref|YP_001395872.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347965|gb|EDK34501.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 372 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 32/91 (35%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I RK TQ+++A +++V+ +E+G+ I L + +S D + Sbjct: 10 IIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVSVDELLGYSP 69 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + + +L + + Sbjct: 70 QLTKKDIKKIYNKLSHEFATKSFDEVMEQCN 100 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I + RK+KG++Q + +G+ +++S +E G + P+I ++ Sbjct: 1 MRELNIRRCIIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + K IK+ Sbjct: 61 VDELLGYSPQLTKKDIKK 78 >gi|153952986|ref|YP_001393751.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219853643|ref|YP_002470765.1| hypothetical protein CKR_0300 [Clostridium kluyveri NBRC 12016] gi|146345867|gb|EDK32403.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219567367|dbj|BAH05351.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 368 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +RK TQ+++ +AV+ +E G I L + + IS D + Sbjct: 5 QIGEVILKLRKKREITQEQLGKFIGVSTAAVSKWEVGNSYPDITLLPVLASFFNISIDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + ++ E + + + G ++ Sbjct: 65 LNYKIELSEKEVMEIFRECEAMFAGENIEK 94 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + +RK + ++Q + GK +G+ + +S +E G + P+I + Sbjct: 1 MDKLQIGEVILKLRKKREITQEQLGKFIGVSTAAVSKWEVGNSYPDITLLPVLASFFNIS 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + K + Sbjct: 61 IDELLNYKIELSEKEV 76 >gi|222053937|ref|YP_002536299.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563226|gb|ACM19198.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 187 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R A T + +A + ++ EN S I + +++ Sbjct: 5 NIGAKIKKLRLAKKLTLQAVAKETGFSPALISQIENNNVSPPIATLSKIAKFFDVKVGMF 64 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + + R+E V +R Sbjct: 65 FAEDEEECRFEVVRKGER 82 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + Y IGA++K +R K ++ K G + +S E P I KI + Sbjct: 1 MTDYNIGAKIKKLRLAKKLTLQAVAKETGFSPALISQIENNNVSPPIATLSKIAKFFDVK 60 Query: 169 LDWIYFGDEV 178 + + DE Sbjct: 61 VGMFFAEDEE 70 >gi|223932874|ref|ZP_03624870.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223898455|gb|EEF64820.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 168 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K++R+ +QKE+A E ++ +ENG + A L + +E+ ++ Sbjct: 2 NRLKELRQEKKLSQKELADYLGINEKTISRWENGESTIKSDKAQALADYFEVEVGYLL 59 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R++K +SQ E LG+ T+S +E G + + A+ + + + ++ Sbjct: 1 MNRLKELRQEKKLSQKELADYLGINEKTISRWENGESTIKSDKAQALADYFEVEVGYLLG 60 Query: 175 GDE 177 +E Sbjct: 61 YNE 63 >gi|323140461|ref|ZP_08075389.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] gi|322415029|gb|EFY05820.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] Length = 104 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 41/103 (39%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 ++ +Y + +G R+K R + +Q E+A ++ ++ ENG +I + L Sbjct: 1 MMMNMTEEYNRLIGKRVKMQRISAKVSQTELAKELGVTQTHLSNIENGRAGLTIPNLIKL 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 E + ++ ++ ++ + + LK R Sbjct: 61 HQILECPISSFFVDIEWEKEADNSSDITLENVMELARLLKKAR 103 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + N IG R+K R +SQ E K LG+ + LSN E GR I K+ Sbjct: 1 MMMNMTEEYNRLIGKRVKMQRISAKVSQTELAKELGVTQTHLSNIENGRAGLTIPNLIKL 60 Query: 162 KQVTKKHLDWIY----FGDEVIVPKSIKRAKGNQSSKKSKK 198 Q+ + + + + E I + ++ KK Sbjct: 61 HQILECPISSFFVDIEWEKEADNSSDITLENVMELARLLKK 101 >gi|316935911|ref|YP_004110893.1| XRE family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603625|gb|ADU46160.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris DX-1] Length = 480 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + IR+ +Q ++A G S VNL E + + L L Y++ + Sbjct: 11 VGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNY 146 + R+ N+ DP L + +R + +L G+ +S Y Sbjct: 70 -ATADEDRFFAELNEIFSDPLFRQIDLPKQELR--------DLAELCPGVTHSLQRLY 118 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + IR+ G+SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRDLATADED 75 >gi|256811069|ref|YP_003128438.1| XRE family transcriptional regulator [Methanocaldococcus fervens AG86] gi|256794269|gb|ACV24938.1| transcriptional regulator, XRE family [Methanocaldococcus fervens AG86] Length = 64 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++RK + TQ+E+A + E G S++ AL + + + + +++ Sbjct: 3 NRLRELRKEHGITQEELAKALGVTRQTIIAIEKGKYDPSLKLALKIVKFFGVKVEDVFEL 62 Query: 94 EV 95 E Sbjct: 63 EE 64 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +RK+ G++Q E K LG+ T+ E+G+ P +K A KI + ++ ++ Sbjct: 1 MKNRLRELRKEHGITQEELAKALGVTRQTIIAIEKGKYDPSLKLALKIVKFFGVKVEDVF 60 Query: 174 FGDE 177 +E Sbjct: 61 ELEE 64 >gi|223041436|ref|ZP_03611639.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] gi|223017694|gb|EEF16101.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] Length = 127 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK T ++ + ++ +E G ++ + + + + S W + Sbjct: 13 IGKRIQQRRKELGLTASALSEQIGIAQQQLSRYERGDNKINVSHLVEIATALDTSIGWFF 72 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R++ RK+ G++ + +G+ LS YE+G + +I + W Sbjct: 12 FIGKRIQQRRKELGLTASALSEQIGIAQQQLSRYERGDNKINVSHLVEIATALDTSIGWF 71 Query: 173 Y 173 + Sbjct: 72 F 72 >gi|295105756|emb|CBL03299.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 154 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +IR+ N TQ EMA AV+ +E G I + E+ + + + D Sbjct: 9 EIRERNGLTQAEMAERLFVTRQAVSRWECGDTQPGIDALKLIAAEFHVPIEKLLD 63 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AI L IR+ G++Q E + L + +S +E G T P I + I ++ Sbjct: 1 MAIKDTLIEIRERNGLTQAEMAERLFVTRQAVSRWECGDTQPGIDALKLIAAEFHVPIEK 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|226322523|ref|ZP_03798041.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758] gi|225209017|gb|EEG91371.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758] Length = 197 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G+R++ +RK +G++ E + G +S E+ P + RKI W+ Sbjct: 1 MYGSRIREMRKKRGLTLKEVAEATGYTIGHISQIERDLKSPSLVALRKIAVCLDCSEVWL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 GD + KS + K ++ S +K+ + Sbjct: 61 IMGDSELSAKSPEEGKKSKESYLVRKENRIP 91 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 3/96 (3%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+RI+++RK T KE+A ++ E + S S+ + + S W+ Sbjct: 3 GSRIREMRKKRGLTLKEVAEATGYTIGHISQIERDLKSPSLVALRKIAVCLDCSEVWLIM 62 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 G+ KK + Y + K R + Sbjct: 63 GDSELSAKSPEEGKKSKESYLVR---KENRIPMKIP 95 >gi|29375459|ref|NP_814613.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227554984|ref|ZP_03985031.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229548810|ref|ZP_04437535.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|257421120|ref|ZP_05598110.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|293383752|ref|ZP_06629659.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293388772|ref|ZP_06633265.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294781285|ref|ZP_06746631.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|307267950|ref|ZP_07549338.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|312901584|ref|ZP_07760857.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312904434|ref|ZP_07763593.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312907032|ref|ZP_07766028.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312952858|ref|ZP_07771720.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978710|ref|ZP_07790437.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|29342919|gb|AAO80683.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227175893|gb|EEI56865.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229306039|gb|EEN72035.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|257162944|gb|EEU92904.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|291078828|gb|EFE16192.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291081929|gb|EFE18892.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294451621|gb|EFG20077.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|306515591|gb|EFM84118.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310627017|gb|EFQ10300.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310629374|gb|EFQ12657.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310632132|gb|EFQ15415.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288417|gb|EFQ66973.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311291379|gb|EFQ69935.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315032497|gb|EFT44429.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315034269|gb|EFT46201.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315148032|gb|EFT92048.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315152946|gb|EFT96962.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315155177|gb|EFT99193.1| helix-turn-helix protein [Enterococcus faecalis TX0043] gi|315157505|gb|EFU01522.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315167991|gb|EFU12008.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315574213|gb|EFU86404.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315577343|gb|EFU89534.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315581644|gb|EFU93835.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|323480055|gb|ADX79494.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 232 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 115 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD 176 +DW+ +GD Sbjct: 61 DTTVDWLLYGD 71 >gi|16800830|ref|NP_471098.1| hypothetical protein lin1762 [Listeria innocua Clip11262] gi|16414249|emb|CAC96993.1| lin1762 [Listeria innocua Clip11262] Length = 146 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 38/90 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK RK TQ+E+A N +S ++ +EN S S L + E S D++ Sbjct: 2 ISNRIKSARKYRKLTQEELAKKINSTKSTISNYENSYSSPSAEVISMLADALETSTDYLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + D I L+ I Sbjct: 62 EKTDEIEIKQKYYDLTKKDENDIEKELEKI 91 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R+KS RK + ++Q E K + ST+SNYE + P + + + D++ Sbjct: 1 MISNRIKSARKYRKLTQEELAKKINSTKSTISNYENSYSSPSAEVISMLADALETSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 E IK+ + + K +K Sbjct: 61 L---EKTDEIEIKQKYYDLTKKDENDIEKE 87 >gi|23100594|ref|NP_694061.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22778827|dbj|BAC15095.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 66 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R N TQ+++A V L E G + S++ + + E E++ + ++ Sbjct: 3 NRVKLTRMEKNLTQQQLAARTGITRQTVGLIEKGQYNPSLQLCIKIAKELEVTLNDLFWE 62 Query: 94 EVID 97 E Sbjct: 63 ENNS 66 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R +K ++Q + G+ T+ E+G+ P ++ KI + + L+ ++ Sbjct: 1 MINRVKLTRMEKNLTQQQLAARTGITRQTVGLIEKGQYNPSLQLCIKIAKELEVTLNDLF 60 Query: 174 FGD 176 + + Sbjct: 61 WEE 63 >gi|119387592|ref|YP_918626.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119378167|gb|ABL72930.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 211 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K +RK T +E+A SA++ E S ++ + + ++ + Sbjct: 27 ELGPRLKALRKGQQLTLQEVARLTGVSTSALSKIERNDLSPTLTTLQRIASGLQVELSAL 86 Query: 91 YDGEV 95 E Sbjct: 87 LGDEP 91 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK++RK + ++ E +L G+ S LS E+ P + ++I + L + + Sbjct: 32 LKALRKGQQLTLQEVARLTGVSTSALSKIERNDLSPTLTTLQRIASGLQVELSALLGDEP 91 Query: 178 VIVPKSIKRA 187 P + +R+ Sbjct: 92 GHAPTTGRRS 101 >gi|328553993|gb|AEB24485.1| DNA-binding protein [Bacillus amyloliquefaciens TA208] Length = 128 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K RK TQ E+A + ++ +ENG + S L + + + D++ Sbjct: 2 LSKRLKICRKQKKLTQTELAQKVKTTKGTISNYENGHSTPSNEMLRDLADALDTTTDYLL 61 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK RK K ++Q E + + T+SNYE G + P + R + D++ Sbjct: 1 MLSKRLKICRKQKKLTQTELAQKVKTTKGTISNYENGHSTPSNEMLRDLADALDTTTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|271968400|ref|YP_003342596.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270511575|gb|ACZ89853.1| transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 78 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +DV RI +R ++K++A + E G S S+ AL + +E+ + Sbjct: 4 EDVHNRISVLRAERGVSRKDLAAALGVHYQTIGYLERGQYSPSLFLALRIAEYFEVPVEI 63 Query: 90 IYDGEVIDR 98 ++ R Sbjct: 64 VFSLRPFPR 72 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 33/65 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + R+ +R ++G+S+ + LG+ T+ E+G+ P + A +I + + Sbjct: 1 MSAEDVHNRISVLRAERGVSRKDLAAALGVHYQTIGYLERGQYSPSLFLALRIAEYFEVP 60 Query: 169 LDWIY 173 ++ ++ Sbjct: 61 VEIVF 65 >gi|227485924|ref|ZP_03916240.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227236157|gb|EEI86172.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 207 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 35/85 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +R+ T +E SA++ ENG + + + L + N Y ++ W+ +G Sbjct: 3 ENIKKLRQELGLTMEEFGKNLGVTRSAISNIENGYRNLTEQMILAICNVYNVNEQWLRNG 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + +++ +L Sbjct: 63 TGDMFVEDTDSLIEKIISDYPLDKL 87 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +R++ G++ EFGK LG+ S +SN E G + I V + W+ Sbjct: 1 MNENIKKLRQELGLTMEEFGKNLGVTRSAISNIENGYRNLTEQMILAICNVYNVNEQWLR 60 Query: 174 FG 175 G Sbjct: 61 NG 62 >gi|160895055|ref|ZP_02075829.1| hypothetical protein CLOL250_02605 [Clostridium sp. L2-50] gi|156863486|gb|EDO56917.1| hypothetical protein CLOL250_02605 [Clostridium sp. L2-50] Length = 209 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+RIK R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + ++ A+G L+ + Sbjct: 64 VSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 99 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 12 SRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 70 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 71 GETDEYETDITDKRE 85 >gi|126641560|ref|YP_001084544.1| hypothetical protein A1S_1515 [Acinetobacter baumannii ATCC 17978] gi|184157878|ref|YP_001846217.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|239502244|ref|ZP_04661554.1| transcriptional regulator [Acinetobacter baumannii AB900] gi|332872520|ref|ZP_08440490.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|126387444|gb|ABO11942.1| hypothetical protein A1S_1515 [Acinetobacter baumannii ATCC 17978] gi|183209472|gb|ACC56870.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|238685471|gb|ACR54771.1| predicted transcriptional regulator [Acinetobacter genomosp. 13TU] gi|255076973|gb|ACU00285.1| transcriptional regulator [Acinetobacter baumannii] gi|322508196|gb|ADX03650.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] gi|323517283|gb|ADX91664.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|323517795|gb|ADX92176.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332739326|gb|EGJ70183.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 197 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 2/98 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+++R A T +A SA++L E G S + L N E Sbjct: 1 MDDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLE 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA--RLKS 120 + I+ E + + + + + ++ Sbjct: 61 VPLTQIFTNEAGNSSSQPLIRRNEQAEWRDPETGYIRR 98 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + + S +S E+G T P K+ + L I+ Sbjct: 10 HRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFTN 69 Query: 176 D 176 + Sbjct: 70 E 70 >gi|103487098|ref|YP_616659.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977175|gb|ABF53326.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 71 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +R N +Q E+A + AVN E G S+ A L +++ + I+D Sbjct: 3 NQLKVLRAMRNWSQAELADRLDVSRQAVNAIETGKYDPSLPLAFKLARLFDMPIEEIFDD 62 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK +R + SQ E L + ++ E G+ P + A K+ ++ ++ I+ Sbjct: 1 MNNQLKVLRAMRNWSQAELADRLDVSRQAVNAIETGKYDPSLPLAFKLARLFDMPIEEIF 60 >gi|229144991|ref|ZP_04273387.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST24] gi|228638513|gb|EEK94947.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST24] Length = 192 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 12 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 71 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M K S Sbjct: 72 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLN---KRANTTES 128 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 S+ ++ I K +V L+ ++ GD V +P ++K N+S + + Sbjct: 129 HYSHEDKEE----IAVIMK-GEVY-VELEGKEYFLEEGDVVRIPPNVKHRFLNKSDESN 181 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ D + Sbjct: 19 YRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFIND-IDT 77 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 78 DSLISKKKDRKKVYRENND 96 >gi|34762120|ref|ZP_00143128.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741413|ref|ZP_04571894.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256846585|ref|ZP_05552042.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294784172|ref|ZP_06749473.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] gi|27888197|gb|EAA25255.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430945|gb|EEO41157.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256718354|gb|EEU31910.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294488242|gb|EFG35587.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] Length = 184 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K R + +E+A S ++ E G S SI + + ++ ++ Sbjct: 3 IGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + E D R + K+ + Sbjct: 63 EDEEDDIRNIEHIKKENIRYIE 84 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 35/79 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK R DKGMS E + + S LS EQG+ P I+ +KI + + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + +E + K N Sbjct: 61 LIEDEEDDIRNIEHIKKEN 79 >gi|294992409|gb|ADF57341.1| transcriptional regulator [Roseburia inulinivorans DSM 16841] Length = 142 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++K++RK NN TQ +A + + +E G + L Y IS D + Sbjct: 8 QKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYKLAGLYNISVDDLLH 66 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +LK +RK +Q ++LG+ T S+YE G+ P+ + K+ + Sbjct: 1 MKNKLLPQKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYKLAGLYNIS 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDDLL 65 >gi|223043812|ref|ZP_03613854.1| DNA-binding protein [Staphylococcus capitis SK14] gi|222442716|gb|EEE48819.1| DNA-binding protein [Staphylococcus capitis SK14] Length = 179 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 39/91 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +++++R+ N TQ+E+A + + ++ E+ S SI L + S Sbjct: 2 DIGYKLRNLRRIKNFTQEELAERTDLSKGYISQIESQHASPSIETFLNILEVLGTSASDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ ++ D Y G L + Sbjct: 62 FQERPSEKVLYKKKDQITYDEYDRGYILNWL 92 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 2/79 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R+ K +Q E + + +S E P I+ I +V Sbjct: 1 MDIGYKLRNLRRIKNFTQEELAERTDLSKGYISQIESQHASPSIETFLNILEVLGTSASD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + E K + + K Sbjct: 61 FF--QERPSEKVLYKKKDQ 77 >gi|78063471|ref|YP_373379.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971356|gb|ABB12735.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 73 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +R+A +Q+++A A S V E G SI A + +++S + Sbjct: 8 FGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 67 Query: 92 DGEV 95 G Sbjct: 68 PGAY 71 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + GA ++ +R+ + SQ + + G+ S + E+G I I A KI + + Sbjct: 6 HHFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSIST 65 Query: 172 IYFG 175 + G Sbjct: 66 LLPG 69 >gi|39937455|ref|NP_949731.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192293238|ref|YP_001993843.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39651314|emb|CAE29836.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] gi|192286987|gb|ACF03368.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 480 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + IR+ +Q ++A G S VNL E + + L L Y++ + Sbjct: 11 VGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNY 146 + R+ N+ DP L + +R + +L G+ +S Y Sbjct: 70 -ATADEDRFFAELNEIFSDPLFRQIDLPKQELR--------DLAELCPGVTHSLQRLY 118 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + IR+ G+SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRDLATADED 75 >gi|326575959|gb|EGE25882.1| peptidase S24-like protein [Moraxella catarrhalis CO72] Length = 233 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ R+K RKA TQK++ +SA + E+G S A+ L + + + W Sbjct: 2 ELKDRLKYARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSK-STTRAIELAHLFGVDVHW 60 Query: 90 IYDGEVIDRRYEDV 103 + GE + Sbjct: 61 LISGEGEMTKNNYK 74 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK RK KG++Q + + + G+ S S E G++ A ++ + + Sbjct: 1 MELKDRLKYARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSK-STTRAIELAHLFGVDVH 59 Query: 171 WIYFGDEVIVPKSIKRA 187 W+ G+ + + K A Sbjct: 60 WLISGEGEMTKNNYKLA 76 >gi|326405605|gb|ADZ62676.1| transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis CV56] Length = 107 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RK N +Q+E+A + +++ +E G + + L ++ S D + Sbjct: 2 EISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTGQIILLSEIFDCSLDTL 61 Query: 91 YDGEVIDRRYED 102 G+ Sbjct: 62 LKGDKKMEEKAK 73 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +K RK K +SQ E K + + ++S +E G+++P + ++ LD Sbjct: 1 MEISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTGQIILLSEIFDCSLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD+ + K+ ++ K Sbjct: 61 LLKGDKKMEEKAKHEIDDKRTLK 83 >gi|206576130|ref|YP_002237033.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|206565188|gb|ACI06964.1| DNA-binding protein [Klebsiella pneumoniae 342] Length = 189 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 8/73 (10%), Positives = 30/73 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G++I+ +R++ + +++ + + A++ E+G S + + + + Sbjct: 15 NIGSKIRRLRQSRGISLNDLSKLSGVSKGALSKLESGSSSPRVDTLDAIATALRLPVGDL 74 Query: 91 YDGEVIDRRYEDV 103 G + Sbjct: 75 LSGGSRMYPRFEK 87 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +R+ +G+S + KL G+ LS E G + P + I + + + G Sbjct: 20 IRRLRQSRGISLNDLSKLSGVSKGALSKLESGSSSPRVDTLDAIATALRLPVGDLLSGGS 79 Query: 178 VIVPKSIK 185 + P+ K Sbjct: 80 RMYPRFEK 87 >gi|93007412|ref|YP_579176.1| transcriptional regulator [Streptomyces phage mu1/6] gi|90568490|gb|ABD94169.1| transcriptional regulator [Streptomyces phage mu1/6] Length = 93 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + +++Q+ DVG RI+++R A +Q +++ ++ ENG+ + SI A + Sbjct: 20 LADQVQQHRWDVGARIRELRLAAGLSQVDLSHRIGVDHRTISRAENGVHAISIDQAYRIA 79 Query: 81 NEYE 84 Sbjct: 80 TALG 83 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 13/85 (15%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 +S D + ++ + + +GAR++ +R G+SQ++ +G+ + T+ Sbjct: 14 GVSTDDL-------------ADQVQQHRWDVGARIRELRLAAGLSQVDLSHRIGVDHRTI 60 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKH 168 S E G I A +I + Sbjct: 61 SRAENGVHAISIDQAYRIATALGQP 85 >gi|307628247|gb|ADN72551.1| transcriptional regulator, XRE family protein [Escherichia coli UM146] Length = 154 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 5/135 (3%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L + Sbjct: 2 KKSLRIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALS 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + + + + ++ D L S R + + S Sbjct: 62 VEPWQLLVFDSSEENDPELLVPYAADGTCFNPELASSRDGSFAVGDKAAQK-----RFGS 116 Query: 145 NYEQGRTIPEIKPAR 159 E + ++ A+ Sbjct: 117 FIEALEYLRSMETAK 131 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+K +R GMSQ F G S +S E+G + + + Sbjct: 7 IQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALSVEPWQ 66 Query: 172 IYFGD--EVIVPKSI 184 + D E P+ + Sbjct: 67 LLVFDSSEENDPELL 81 >gi|307129603|ref|YP_003881619.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306527132|gb|ADM97062.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 76 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R +Q+ A + ++ E G+ + ++ L ++ Sbjct: 11 LGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATGLHTDLTTLF 70 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K++R G+SQ F + G+ + +S E+G P ++ + L ++ Sbjct: 13 QRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATGLHTDLTTLF 70 >gi|295106954|emb|CBL04497.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 73 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G RIKD+R+ +Q A + + E G + S+ + IS Sbjct: 6 ETQRRLGLRIKDLREERGLSQYACAPLLGVSRTYLADVECGRRNVSLATLDSIARGLGIS 65 Query: 87 FDWIYDG 93 + + G Sbjct: 66 LEELLKG 72 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +R+++G+SQ LLG+ + L++ E GR + I + L+ + G Sbjct: 15 IKDLREERGLSQYACAPLLGVSRTYLADVECGRRNVSLATLDSIARGLGISLEELLKG 72 >gi|255306892|ref|ZP_05351063.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 169 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 2 LSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKSIKRAK 188 E IV + K Sbjct: 61 LG--ETIVELEVDSLK 74 >gi|164687004|ref|ZP_02211032.1| hypothetical protein CLOBAR_00630 [Clostridium bartlettii DSM 16795] gi|164603889|gb|EDQ97354.1| hypothetical protein CLOBAR_00630 [Clostridium bartlettii DSM 16795] Length = 71 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R Q EM ++ E G S S+ AL + +S + I+ Sbjct: 5 NRLKEYRAKIKVNQTEMGNLVGVSRQTISQIERGDYSPSVTLALKIAKVLNVSVEEIFSY 64 Query: 94 EV 95 E Sbjct: 65 EE 66 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK R ++Q E G L+G+ T+S E+G P + A KI +V ++ Sbjct: 1 MPLYNRLKEYRAKIKVNQTEMGNLVGVSRQTISQIERGDYSPSVTLALKIAKVLNVSVEE 60 Query: 172 IYFGDEVIVPK 182 I+ +E + Sbjct: 61 IFSYEEGEENE 71 >gi|304383918|ref|ZP_07366375.1| transcriptional regulator [Prevotella marshii DSM 16973] gi|304334996|gb|EFM01269.1| transcriptional regulator [Prevotella marshii DSM 16973] Length = 184 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +G R+K +R+ N +E+A + E G S+ + Y Sbjct: 1 MEEAIQQIGQRLKGLREVLNIPAEEVADLCGISLEHYHNIEAGRSDPSVYRLAKISKRYG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 I + + GE +T K + G K Sbjct: 61 IDLNVLLFGEEPKMSAYYLTRKGQGHRVERGNDYK 95 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 34/86 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ + E L G+ N E GR+ P + KI + L+ + FG Sbjct: 10 QRLKGLREVLNIPAEEVADLCGISLEHYHNIEAGRSDPSVYRLAKISKRYGIDLNVLLFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + KG + D K Sbjct: 70 EEPKMSAYYLTRKGQGHRVERGNDYK 95 >gi|302672203|ref|YP_003832163.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396676|gb|ADL35581.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 209 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 44/138 (31%), Gaps = 2/138 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI + + + TQKE + + ++ + + + + +++ +++ Sbjct: 3 IGQRIFYLLEEKHMTQKEFSDRTGIATTTISDWRKKNTNPGSDKIMSICAALDVTPEYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G D + + L I M+ ++ ++ + Sbjct: 63 SGVTEDSDRGRNIDYMVIPTGTEERELIEI--FNDMNFVDRAHVMEYARKISERKSRYCE 120 Query: 152 IPEIKPARKIKQVTKKHL 169 + K KI + + Sbjct: 121 TAKAKSMVKIAEFCDIEV 138 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+ + ++K M+Q EF G+ +T+S++ + T P I ++ Sbjct: 1 MTIGQRIFYLLEEKHMTQKEFSDRTGIATTTISDWRKKNTNPGSDKIMSICAALDVTPEY 60 Query: 172 IYFG 175 + G Sbjct: 61 LLSG 64 >gi|229000424|ref|ZP_04159978.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] gi|228759319|gb|EEM08311.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] Length = 415 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 7/140 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI +R T E++ G + +++ ENG + S+ ++ ++ ++ Sbjct: 6 ELGKRINKLRVEKGMTLVELS-GNKMSKGMLSMIENGHSNPSMDSLKFIAHQLGCDPQYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI-----EFGKLLGMPNSTLSN 145 D + ++ ++ + Q E ++L + T+ Sbjct: 65 LGSPTSDELKHLFNKVEEAFEKNNDEQIINL-THDMLDQQFPISFESARILEISGRTVMK 123 Query: 146 YEQGRTIPEIKPARKIKQVT 165 EQ R I+ A I + Sbjct: 124 SEQKRGEMLIERAVAIYERL 143 Score = 41.1 bits (95), Expect = 0.099, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L +G R+ +R +KGM+ +E M LS E G + P + + I Sbjct: 1 MLKMNELGKRINKLRVEKGMTLVELSGN-KMSKGMLSMIENGHSNPSMDSLKFIAHQLGC 59 Query: 168 HLDWIY 173 ++ Sbjct: 60 DPQYLL 65 >gi|152968233|ref|YP_001364017.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362750|gb|ABS05753.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 70 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 36/66 (54%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R ++G +Q LL + T++ E GR P + A ++ ++ ++ ++ I+ Sbjct: 3 NRIRALRTERGWTQAALADLLDVSRQTVNALETGRYDPSLPLAFRLARLLERPIEEIFVY 62 Query: 176 DEVIVP 181 DE P Sbjct: 63 DETSAP 68 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R TQ +A + VN E G S+ A L E + I+ Sbjct: 3 NRIRALRTERGWTQAALADLLDVSRQTVNALETGRYDPSLPLAFRLARLLERPIEEIFVY 62 Query: 94 EVIDRR 99 + Sbjct: 63 DETSAP 68 >gi|320326809|gb|EFW82846.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882609|gb|EGH16758.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 123 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK + +Q E+A + +E G+ SI + L ++S + Sbjct: 18 VGAKIKVLRKMADLSQAELAALIGCDAPIIGRYERGIHMPSIEQLIKLSTALKVSPAELL 77 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + R + ++ + +L Sbjct: 78 PNQDDEIRQQLISLRSQL 95 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K +RK +SQ E L+G + YE+G +P I+ K+ K + Sbjct: 20 AKIKVLRKMADLSQAELAALIGCDAPIIGRYERGIHMPSIEQLIKLSTALKVSPAELLPN 79 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + + + + + S K D Sbjct: 80 QDDEIRQQLISLRSQLSLIGMKID 103 >gi|297158608|gb|ADI08320.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 206 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 K E + P + DVG R+ R+ + + +A ++ S ++ E G S Sbjct: 6 KPATESKSVPEPPAERPESDVGRRVHAFRRLRRMSLRALAERSDVSGSFLSQLERGRSSA 65 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK---GMS 128 SI + + I+ ++D I ++ LD G + R+ G+ Sbjct: 66 SISTLARIASALGITMAELFDTSAIGPTPLRAQDRPVLDWVGGGRKTSLTREPLSGFGVY 125 Query: 129 QIEFG 133 + EF Sbjct: 126 EAEFA 130 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+ + MS + + S LS E+GR+ I +I + ++ Sbjct: 32 AFRRLRRMSLRALAERSDVSGSFLSQLERGRSSASISTLARIASALGITMAELF 85 >gi|295108966|emb|CBL22919.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 351 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK+ RK TQ+++A AVN +E G I L +I + ++ Sbjct: 3 IGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNTYPDISLLPALARLLKIDMNELF 62 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 38/73 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K+ RK G++Q + LG+ ++ +E+G T P+I + ++ K ++ Sbjct: 1 MRIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNTYPDISLLPALARLLKIDMNE 60 Query: 172 IYFGDEVIVPKSI 184 ++ E + K I Sbjct: 61 LFSFHEELTEKEI 73 >gi|260597879|ref|YP_003210450.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032] gi|260217056|emb|CBA30782.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032] Length = 191 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I + +G RI+ R+ + E+A A + ++ E G S + L Sbjct: 5 IDTLNQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLSGALG 64 Query: 85 ISFDWIY 91 +S + Sbjct: 65 LSMSTLI 71 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 33/86 (38%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + N IG R++ R+ +G S E + G+ + + E+G + P ++ Sbjct: 1 MNNIIDTLNQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLS 60 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAK 188 + + E+ + ++ A Sbjct: 61 GALGLSMSTLIARAEMNEGRLLRFAD 86 >gi|229148196|ref|ZP_04276499.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228635208|gb|EEK91735.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] Length = 115 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 8/114 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG IK +RK+ + TQ++++ + +E + L + + S D + Sbjct: 5 VGQNIKQLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 + E + ++ + G Q F K + + L N Sbjct: 65 NFENRKEDALLGLLFNDIQ--------RAYEELDGRQQGRFAKQVSLYVKMLQN 110 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +RK ++Q + + G+ + N+E R P+++ + + D + Sbjct: 7 QNIKQLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALLNF 66 Query: 176 D 176 + Sbjct: 67 E 67 >gi|229156698|ref|ZP_04284785.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC 4342] gi|228626618|gb|EEK83358.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC 4342] Length = 125 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK N + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSELRKNQNWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSELRKNQNWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Query: 174 FGDEVIVP 181 E P Sbjct: 61 GRIEHSHP 68 >gi|255280400|ref|ZP_05344955.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255268865|gb|EET62070.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 124 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 32/72 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI +++ N T K++ +GA S+++ ++ G S+ + + + + +S D++ Sbjct: 7 DRIFQLKEERNLTSKDVEVGAGLANSSLSQWKKGKGKPSLENIIKVASYFNVSTDYLLCL 66 Query: 94 EVIDRRYEDVTN 105 + Sbjct: 67 SDEKNGRGETDK 78 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 38/83 (45%), Gaps = 6/83 (7%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +++++ ++ + G+ NS+LS +++G+ P ++ K+ D++ + Sbjct: 9 IFQLKEERNLTSKDVEVGAGLANSSLSQWKKGKGKPSLENIIKVASYFNVSTDYLLCLSD 68 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 K +G S+++K Sbjct: 69 E------KNGRGETDKSLSEEEK 85 >gi|225375839|ref|ZP_03753060.1| hypothetical protein ROSEINA2194_01471 [Roseburia inulinivorans DSM 16841] gi|225212274|gb|EEG94628.1| hypothetical protein ROSEINA2194_01471 [Roseburia inulinivorans DSM 16841] Length = 142 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++K++RK NN TQ +A + + +E G + L Y IS D + Sbjct: 8 QKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYKLAGLYNISVDDLLH 66 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +LK +RK +Q ++LG+ T S+YE G+ P+ + K+ + Sbjct: 1 MKNKLLPQKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYKLAGLYNIS 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDDLL 65 >gi|254420939|ref|ZP_05034663.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196187116|gb|EDX82092.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 476 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 27/78 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R+ TQ MA S +N E S + L L Y++ + Sbjct: 11 LGARLKRLRRDLALTQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVDLRSLN 70 Query: 92 DGEVIDRRYEDVTNKKRL 109 G D L Sbjct: 71 QGGAADEARLGEVLADPL 88 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +GARLK +R+D ++Q LG+ S L++ E+ + + ++ + L Sbjct: 9 LFLGARLKRLRRDLALTQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVDL 66 >gi|154503082|ref|ZP_02040142.1| hypothetical protein RUMGNA_00905 [Ruminococcus gnavus ATCC 29149] gi|153796323|gb|EDN78743.1| hypothetical protein RUMGNA_00905 [Ruminococcus gnavus ATCC 29149] Length = 77 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ + TQK M N + + +E G + + L + S D++ D Sbjct: 3 KRIRDLREDRDLTQKNMGEILNCSQRIYSNYECGDVDIPTQILIKLAEFHNTSVDYLLDL 62 Query: 94 EVIDRRYEDVTN 105 R Y N Sbjct: 63 TDDKRPYSRKRN 74 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 34/73 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D+ ++Q G++L SNYE G + K+ + +D++ Sbjct: 1 MYKRIRDLREDRDLTQKNMGEILNCSQRIYSNYECGDVDIPTQILIKLAEFHNTSVDYLL 60 Query: 174 FGDEVIVPKSIKR 186 + P S KR Sbjct: 61 DLTDDKRPYSRKR 73 >gi|315925909|ref|ZP_07922114.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620730|gb|EFV00706.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 188 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 6/107 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK IRK+ +Q E+A+ N + V+ +E G+ + + E + Sbjct: 21 LSENIKTIRKSKGLSQDELAVKLNVVRQTVSKWERGLSVPDSEMLISISEVLETPVSTLL 80 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL-----KSIRKDKGMSQIEFG 133 GE I+ I +L +S R G+ I Sbjct: 81 -GESINESEASELKAISEKLEVINLQLAQRKERSRRLLHGLFIILCA 126 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K+IRK KG+SQ E L + T+S +E+G ++P+ + I +V + + Sbjct: 19 IMLSENIKTIRKSKGLSQDELAVKLNVVRQTVSKWERGLSVPDSEMLISISEVLETPVST 78 Query: 172 IYFGDEVIVPKSIK 185 + G+ + ++ + Sbjct: 79 LL-GESINESEASE 91 >gi|293401672|ref|ZP_06645814.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304930|gb|EFE46177.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 69 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R+ ++ +Q E+A N + + +E G S + L Y + +++ D Sbjct: 6 KRLRDLREDHDLSQAELAKFLNISQRTYSYYETGERSVPVEILAKLAKFYNTTIEYLIDN 65 Query: 94 EVID 97 + + Sbjct: 66 KNSN 69 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RL+ +R+D +SQ E K L + T S YE G ++ K+ + ++ Sbjct: 1 MEVTYKRLRDLREDHDLSQAELAKFLNISQRTYSYYETGERSVPVEILAKLAKFYNTTIE 60 Query: 171 WIY 173 ++ Sbjct: 61 YLI 63 >gi|237796640|ref|YP_002864192.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|229260795|gb|ACQ51828.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 189 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 38/89 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R T KE++ N ++ E G+ + +I + E ++S + Sbjct: 4 DIGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +++ + +K + +K Sbjct: 64 FQAPKRNKKIVLRSYEKEILQVENNRFIK 92 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K +R +K ++ E + + LS E+G T I KI + L + + Sbjct: 7 KKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFF 64 >gi|218673688|ref|ZP_03523357.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 99 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P+ +G ++ RK T ++A ++ ENG S S+ Sbjct: 21 QDPHAVREPKENNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLT 80 Query: 75 YALYLRNEYEISF 87 L + Sbjct: 81 TLQSLSRALGVPL 93 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + L AIG +++ RK G++ + G+ LS E G P Sbjct: 20 SQDPHAVREPKENNL-EMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPS 78 Query: 155 IKPARKIKQVTKKHLDWIY 173 + + + + L + Sbjct: 79 LTTLQSLSRALGVPLTAFF 97 >gi|163734287|ref|ZP_02141727.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161392295|gb|EDQ16624.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 190 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G ++ +RKA T ++A + ++ E SI + E+S Sbjct: 10 QTLGADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEVSISM 69 Query: 90 IYDG 93 ++ Sbjct: 70 LFRH 73 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A L+++RK +G++ + + LG LS E+ ++ P I R I +V + + ++ Sbjct: 14 ADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEVSISMLF 71 >gi|110677441|ref|YP_680448.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453557|gb|ABG29762.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 190 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G ++ +RKA T ++A + ++ E SI + E+S Sbjct: 10 QTLGADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEVSISM 69 Query: 90 IYDG 93 ++ Sbjct: 70 LFRH 73 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A L+++RK +G++ + + LG LS E+ ++ P I R I +V + + ++ Sbjct: 14 ADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEVSISMLF 71 >gi|108761825|ref|YP_633731.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108465705|gb|ABF90890.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 222 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 M F+ +LQ+ L PE + +G I+D RK T K++A S Sbjct: 130 MEPEQFITAVRNALQKKGLSQDPEAD-LHRAIGRTIRDARKTQELTLKQLARRTGLSVSL 188 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ E S SI + + ++ ++ Sbjct: 189 LSQIERAESSASISSLYKIASALQLRMGELF 219 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 AIG ++ RK + ++ + + G+ S LS E+ + I KI + + Sbjct: 157 HRAIGRTIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSASISSLYKIASALQLRMG 216 Query: 171 WIY 173 ++ Sbjct: 217 ELF 219 >gi|46906984|ref|YP_013373.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|46880250|gb|AAT03550.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] Length = 169 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKS 183 G+ V+V K Sbjct: 61 L-GETVMVSKV 70 >gi|21233393|ref|NP_639310.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770358|ref|YP_245120.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|188993556|ref|YP_001905566.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|325920249|ref|ZP_08182199.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325923520|ref|ZP_08185169.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325923552|ref|ZP_08185196.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|21115231|gb|AAM43192.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575690|gb|AAY51100.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|167735316|emb|CAP53530.1| transcriptional regulator [Xanthomonas campestris pv. campestris] gi|325545969|gb|EGD17179.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325545992|gb|EGD17197.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549272|gb|EGD20176.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 66 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R++++R+A+ +Q E+ +N E G S+ A + + S + ++ Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVFLF 62 Query: 94 EV 95 E Sbjct: 63 ED 64 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 37/64 (57%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +R++ +R+ G SQ E G+ LG+ T++ E G+ P + A +I ++ + ++ ++ Sbjct: 1 MNSRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 Query: 174 FGDE 177 ++ Sbjct: 61 LFED 64 >gi|89897035|ref|YP_520522.1| hypothetical protein DSY4289 [Desulfitobacterium hafniense Y51] gi|219667095|ref|YP_002457530.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89336483|dbj|BAE86078.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537355|gb|ACL19094.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 181 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 32/83 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I+ IRK N T ++A + ++L E + S S+ + + + Sbjct: 3 EVGEFIRAIRKRRNLTTTQLADQLDLSNGYISLIERNIVSPSLATLKRIAQALSVPLESF 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 + + Y + ++ A Sbjct: 63 FLDPDTEIIYSYLKKDEQQYIPA 85 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 33/81 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +++IRK + ++ + L + N +S E+ P + ++I Q L+ Sbjct: 1 MIEVGEFIRAIRKRRNLTTTQLADQLDLSNGYISLIERNIVSPSLATLKRIAQALSVPLE 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 + + + S + Q Sbjct: 61 SFFLDPDTEIIYSYLKKDEQQ 81 >gi|326574451|gb|EGE24393.1| peptidase S24-like protein [Moraxella catarrhalis 101P30B1] Length = 233 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ R+K RKA TQK++ +SA + E+G S A+ L + + + W Sbjct: 2 ELKNRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSK-STTRAVELAHLFGVDVHW 60 Query: 90 IYDGEVIDRRYEDVTNK 106 + GE + D Sbjct: 61 LISGEGEMTKNNDKLTP 77 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK RK KG++Q + + + G+ S S E G++ A ++ + + Sbjct: 1 MELKNRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSK-STTRAVELAHLFGVDVH 59 Query: 171 WIYFGDEVIVPKSIK 185 W+ G+ + + K Sbjct: 60 WLISGEGEMTKNNDK 74 >gi|332652748|ref|ZP_08418493.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332517894|gb|EGJ47497.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 413 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI +R+ +Q+ + AV+ +E+ + + L + I+ + Sbjct: 3 LGTRIAALRRERGLSQEALGELVGVSRQAVSKWESDSALPDVNNCVALSRAFGITLAQLL 62 Query: 92 DGEVIDRRYEDVTNKK-RLDPYAIGARLKSIRKDKGMSQIE 131 + E ++T ++ + L+S+ + KG Q Sbjct: 63 ELEEETAPSRELTREQLEMAETIAKKYLESLPRPKGWRQRR 103 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +G R+ ++R+++G+SQ G+L+G+ +S +E +P++ + + L Sbjct: 1 MTLGTRIAALRRERGLSQEALGELVGVSRQAVSKWESDSALPDVNNCVALSRAFGITL 58 >gi|254557808|ref|YP_003064225.1| transcription regulator [Lactobacillus plantarum JDM1] gi|254046735|gb|ACT63528.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 212 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK RK ++Q + + L + T+S +E + P++ ++ + LD Sbjct: 1 MKFSEKLKVCRKHAQLTQSQVAEQLHVSRKTISGWENDHSFPDVGSLVQLSDIYDVRLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ ++ + + +Q S+K Sbjct: 61 LMR-DDHLLAYYKEAERLHQKSRK 83 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQ ++A + ++ +EN + + L + Y++ D + Sbjct: 5 EKLKVCRKHAQLTQSQVAEQLHVSRKTISGWENDHSFPDVGSLVQLSDIYDVRLDDLMRD 64 Query: 94 E 94 + Sbjct: 65 D 65 >gi|254518274|ref|ZP_05130330.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912023|gb|EEH97224.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 110 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RK +Q+ +A +V +E+ + + L N + +S D + Sbjct: 8 EKLQGLRKEKGLSQEGLAELVGVSRQSVAKWESKKSYPEVDKLVQLSNVFGVSIDKLLKN 67 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + +++ I L +K Sbjct: 68 IEEECCNKEIKKSINGIDEKIIDFLCRAKK 97 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +L+ +RK+KG+SQ +L+G+ +++ +E ++ PE+ ++ V Sbjct: 1 MRGMGFNEKLQGLRKEKGLSQEGLAELVGVSRQSVAKWESKKSYPEVDKLVQLSNVFGVS 60 Query: 169 LDWIYFG-DEVIVPKSIKRA 187 +D + +E K IK++ Sbjct: 61 IDKLLKNIEEECCNKEIKKS 80 >gi|224543501|ref|ZP_03684040.1| hypothetical protein CATMIT_02710 [Catenibacterium mitsuokai DSM 15897] gi|224523628|gb|EEF92733.1| hypothetical protein CATMIT_02710 [Catenibacterium mitsuokai DSM 15897] Length = 126 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E + K +G +K+ R TQ+ +A AV+ +ENG + + L Sbjct: 45 VREEKKVNAKSLGESLKENRLRCKMTQEFVAETLGVSRQAVSKWENGTSDPNTTNLIALS 104 Query: 81 NEYEISFDWIYD 92 Y+++ + + Sbjct: 105 RLYKVTPEDLLK 116 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 +DV +K+++ ++G LK R M+Q + LG+ +S +E G + P Sbjct: 41 NSKDVREEKKVNAKSLGESLKENRLRCKMTQEFVAETLGVSRQAVSKWENGTSDPNTTNL 100 Query: 159 RKIKQVTKKHLDWIYF 174 + ++ K + + Sbjct: 101 IALSRLYKVTPEDLLK 116 >gi|145592882|ref|YP_001157179.1| XRE family transcriptional regulator [Salinispora tropica CNB-440] gi|145302219|gb|ABP52801.1| transcriptional regulator, XRE family [Salinispora tropica CNB-440] Length = 191 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD- 88 ++G I+D+R++ + ++++ A ++ E G+ S L + +S Sbjct: 8 PNIGGFIRDLRRSAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVSTPA 67 Query: 89 -WIYDGEVIDRRYEDVTNKKRLD 110 ++ G + DR + V D Sbjct: 68 MYLRAGLLDDREGQGVLAAIAAD 90 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG ++ +R+ +S + + G+ N LS E+G P + +++ + Sbjct: 6 DLPNIGGFIRDLRRSAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVST 65 >gi|317403733|gb|EFV84218.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 194 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R+A + T K+ A+ S ++ ENG+ S + + + E+ ++ Sbjct: 9 LAQRLRALRQARDWTLKQAALATGVSASTLSKIENGLLSPTYDNLIKIAAGLELDVAELF 68 Query: 92 D 92 Sbjct: 69 T 69 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+++R+ + + + G+ STLS E G P KI + + ++ Sbjct: 11 QRLRALRQARDWTLKQAALATGVSASTLSKIENGLLSPTYDNLIKIAAGLELDVAELFT 69 >gi|331647039|ref|ZP_08348133.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] gi|331043822|gb|EGI15958.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] Length = 108 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G I+ +R+A +Q+E+A + ++ ++ ENG + I+ + + E + + + Sbjct: 4 IGDNIRRMREAAKLSQQELADKSGVSKAQISRLENGTQKNPQIQTVIAIATELGTTIEEL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 GE + L A K I+ M Q E Sbjct: 64 IFGEEPTATTYLSQALQNLPDEDRKAIKKLIKVWILMVQSE 104 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHL 169 IG ++ +R+ +SQ E G+ + +S E + P+I+ I + Sbjct: 1 MNHIGDNIRRMREAAKLSQQELADKSGVSKAQISRLENGTQKNPQIQTVIAIATELGTTI 60 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + FG+E + +A N + K KK Sbjct: 61 EELIFGEEPTATTYLSQALQNLPDEDRKAIKK 92 >gi|322420390|ref|YP_004199613.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320126777|gb|ADW14337.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 37/95 (38%), Gaps = 4/95 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+++RKA +Q+++A ++ E G + S+ + ++ ++ Sbjct: 8 LGLRIREVRKARQLSQEKLAEKVGVDPKQISRIEGGKSAPSLDTLEAIAKHLQVEIKDLF 67 Query: 92 DGEVIDRRYEDVTNK----KRLDPYAIGARLKSIR 122 D + + + +D ++ + Sbjct: 68 DFQHLVPEDKIEDQVLRLLGMMDEERKRLVIRMLH 102 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 32/69 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK + +SQ + + +G+ +S E G++ P + I + + + ++ Sbjct: 12 IREVRKARQLSQEKLAEKVGVDPKQISRIEGGKSAPSLDTLEAIAKHLQVEIKDLFDFQH 71 Query: 178 VIVPKSIKR 186 ++ I+ Sbjct: 72 LVPEDKIED 80 >gi|223985560|ref|ZP_03635614.1| hypothetical protein HOLDEFILI_02920 [Holdemania filiformis DSM 12042] gi|223962467|gb|EEF66925.1| hypothetical protein HOLDEFILI_02920 [Holdemania filiformis DSM 12042] Length = 174 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ +Q+ + + + A++ +EN I + + + F+++ Sbjct: 19 LGENLRLLREERGISQEALGQDLSLSDGAISRYENNAAEPDINTLFGMAEIFGVDFNYLL 78 Query: 92 D 92 D Sbjct: 79 D 79 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R+++G+SQ G+ L + + +S YE P+I + ++ +++ Sbjct: 21 ENLRLLREERGISQEALGQDLSLSDGAISRYENNAAEPDINTLFGMAEIFGVDFNYLL 78 >gi|207743919|ref|YP_002260311.1| helix-turn-helix domain transcription regulator protein [Ralstonia solanacearum IPO1609] gi|206595321|emb|CAQ62248.1| probable helix-turn-helix domain transcription regulator protein [Ralstonia solanacearum IPO1609] Length = 118 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 21 ITPEIRQY---WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 + PE Q+ +K +G + R+A TQ ++A + AV+ E G+ +++ Sbjct: 1 MPPENNQHGELFKSIGRTLAQRREAKGLTQDQVAEALHIGTEAVSRMERGITMPTVQRLA 60 Query: 78 YLRNEYEISFDWIY 91 L YE D + Sbjct: 61 ELAEVYECGIDELL 74 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 N+ +IG L R+ KG++Q + + L + +S E+G T+P ++ + Sbjct: 2 PPENNQHGELFKSIGRTLAQRREAKGLTQDQVAEALHIGTEAVSRMERGITMPTVQRLAE 61 Query: 161 IKQVTKKHLDWIY 173 + +V + +D + Sbjct: 62 LAEVYECGIDELL 74 >gi|170756136|ref|YP_001782824.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121348|gb|ACA45184.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 189 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 38/89 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R T KE++ N ++ E G+ + +I + E ++S + Sbjct: 4 DIGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +++ + +K + +K Sbjct: 64 FQAPKKNKKIVLRSYEKEVLQVENNRFIK 92 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K +R +K ++ E + + LS E+G T I KI + L + + Sbjct: 7 KKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFF 64 >gi|153939134|ref|YP_001389968.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152935030|gb|ABS40528.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318053|gb|ADF98430.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 130 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +RK +Q E+ N ++ +E G + + L + +EIS D + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLTALGDFFEISLDELV 62 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +L S+RK KG+SQ E G L + T+S +E G T PE++ + + LD Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLTALGDFFEISLDE 60 Query: 172 IYFGDEVIVPKSIK 185 + +V +SIK Sbjct: 61 LVM--DVKAKESIK 72 >gi|9858108|gb|AAG00996.1|AF287346_1 regulator SinR [Bacillus thuringiensis] Length = 107 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + SI++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQ 129 + D + ++ + + + Q Sbjct: 62 LHDDTTKETNLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQ 104 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + D Sbjct: 61 LLHDD 65 >gi|90962618|ref|YP_536534.1| Cro/CI family transcriptional regulator [Lactobacillus salivarius UCC118] gi|90821812|gb|ABE00451.1| Transcriptional regulator, Cro/CI family [Lactobacillus salivarius UCC118] gi|300215223|gb|ADJ79639.1| Transcriptional regulator, Cro/CI family [Lactobacillus salivarius CECT 5713] Length = 267 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++R +KTQKE+A N E A++ +E G+ ++ L N + + ++ Sbjct: 2 NRIKELRVEKHKTQKEIAEFLNITEQALSYYERGLREPKLKTWQALANFFNVPVSYLQGL 61 Query: 94 EVIDRRYEDVTNKKRLD 110 V + + +K +D Sbjct: 62 GVSREKIINDLVEKMID 78 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+K +R +K +Q E + L + LS YE+G P++K + + + ++ Sbjct: 1 MNRIKELRVEKHKTQKEIAEFLNITEQALSYYERGLREPKLKTWQALANFFNVPVSYL 58 >gi|307278430|ref|ZP_07559505.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306504936|gb|EFM74131.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 232 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 115 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD 176 +DW+ +GD Sbjct: 61 DTTVDWLLYGD 71 >gi|294666246|ref|ZP_06731497.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603955|gb|EFF47355.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 149 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++ R+ TQ+E+ A+ S ++ +E+G L L +S +++ G Sbjct: 12 DRLRNARERAGLTQRELGAEADVNYSQISRYEHGTAFPRPGVLLRLAKATGVSPEYLRSG 71 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL++ R+ G++Q E G + S +S YE G P ++ + T +++ Sbjct: 10 FYDRLRNARERAGLTQRELGAEADVNYSQISRYEHGTAFPRPGVLLRLAKATGVSPEYLR 69 Query: 174 FG 175 G Sbjct: 70 SG 71 >gi|291548332|emb|CBL21440.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 242 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++ VG +I+ RKA T +++A ++ + + +ENG S I + + Sbjct: 1 MSEFTCYVGEQIRKYRKAGKMTLQDLADAIHKSRATICKYENGDISVDIETLYEISQILQ 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 +S + G K A+ Sbjct: 61 VSMSQLTTGLPETAIEPSNAPGKGQKSPFFQAQ 93 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +++ RK M+ + + +T+ YE G +I+ +I Q+ + + + Sbjct: 7 YVGEQIRKYRKAGKMTLQDLADAIHKSRATICKYENGDISVDIETLYEISQILQVSMSQL 66 Query: 173 YFG-DEVIVPKSIKRAKGNQS 192 G E + S KG +S Sbjct: 67 TTGLPETAIEPSNAPGKGQKS 87 >gi|281492863|ref|YP_003354843.1| phage Cro/CI transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281376515|gb|ADA66001.1| Phage protein, transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 203 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 34/94 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R+ +QKE+A + AV+ +E G + + + +++ Sbjct: 2 ERIKIARQKKGISQKELADLLGLTQQAVSYYEKGSRIPDEHILSVISDILNVPTEYLTGE 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 ++ + P I +K ++ + Sbjct: 62 TDDPEGWDLWEDATGYTPEQIKKEIKRMKSANHI 95 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R+ KG+SQ E LLG+ +S YE+G IP+ I + +++ Sbjct: 1 MERIKIARQKKGISQKELADLLGLTQQAVSYYEKGSRIPDEHILSVISDILNVPTEYLTG 60 Query: 175 G-DEVIVPKSIKRAKGNQSSKKSKKDK--KSSN 204 D+ + A G + K+ K KS+N Sbjct: 61 ETDDPEGWDLWEDATGYTPEQIKKEIKRMKSAN 93 >gi|282882924|ref|ZP_06291529.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B] gi|300814135|ref|ZP_07094418.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297335|gb|EFA89826.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B] gi|300511792|gb|EFK39009.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 179 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 40/91 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R A+ TQ+E+A + + ++ E + S S+ L + S Sbjct: 2 EIGNKIKELRVASGLTQEELATRSELTKGFISQIERDLTSPSVDSLLDILEALGTSPSEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + +R + + +G L+ I Sbjct: 62 FSKDKNERIIFSEDDYFEYENEDLGFFLQWI 92 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R G++Q E + +S E+ T P + I + Sbjct: 1 MEIGNKIKELRVASGLTQEELATRSELTKGFISQIERDLTSPSVDSLLDILEALGTSPSE 60 Query: 172 IYFGDE 177 + D+ Sbjct: 61 FFSKDK 66 >gi|238754555|ref|ZP_04615909.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] gi|238707186|gb|EEP99549.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] Length = 166 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 35/111 (31%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L N Sbjct: 14 KKSLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALS 73 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + + ++ D L S R + + Sbjct: 74 VEPWQLLASDSSEDSDPELLVPYAADGSCFNPGLASSRDGSFGVGDKAAQK 124 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+K +R GMSQ F G S +S E+G + + + Sbjct: 19 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWQ 78 Query: 172 IYFGD--EVIVPKSI 184 + D E P+ + Sbjct: 79 LLASDSSEDSDPELL 93 >gi|229002961|ref|ZP_04160828.1| transcriptional regulator [Bacillus mycoides Rock3-17] gi|228758312|gb|EEM07492.1| transcriptional regulator [Bacillus mycoides Rock3-17] Length = 119 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+IR + TQ++ A + + V+ E+G + S + N +S D+I Sbjct: 5 IGKRIKEIRMSLGYTQQQFADNVDISKPMVSYIESGKKTPSRETVSKISNLANVSTDYIM 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E + L+ R+ Sbjct: 65 GLSDNKNNEESSASDVMLELKHYINRM 91 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K IR G +Q +F + + +S E G+ P + KI + D+I Sbjct: 7 KRIKEIRMSLGYTQQQFADNVDISKPMVSYIESGKKTPSRETVSKISNLANVSTDYIM 64 >gi|149914665|ref|ZP_01903195.1| hypothetical protein RAZWK3B_13769 [Roseobacter sp. AzwK-3b] gi|149811458|gb|EDM71293.1| hypothetical protein RAZWK3B_13769 [Roseobacter sp. AzwK-3b] Length = 210 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 K Q+ + + +G ++++R A T ++A ++ ENG+ S Sbjct: 4 TKLSQDPHKLRETREKNLETAIGREVREVRHARGMTVADLAEATGLSVGMLSKIENGVTS 63 Query: 71 TSIRYALYLRNEYEISF 87 S+ L + + Sbjct: 64 PSLTTLQALSSALSVPV 80 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 AIG ++ +R +GM+ + + G+ LS E G T P + + + + Sbjct: 24 AIGREVREVRHARGMTVADLAEATGLSVGMLSKIENGVTSPSLTTLQALSSALSVPV 80 >gi|119384106|ref|YP_915162.1| hypothetical protein Pden_1365 [Paracoccus denitrificans PD1222] gi|119373873|gb|ABL69466.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 477 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R++ +R++ TQ +MA S V L E+ S R+ + L Y+++ + Sbjct: 9 IGQRLRVLRQSLGLTQAQMAAELGVSASYVTLIESDQRPASARFLMRLAEIYDLNIAEL 67 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 27/57 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +R+ G++Q + LG+ S ++ E + + ++ ++ ++ + Sbjct: 11 QRLRVLRQSLGLTQAQMAAELGVSASYVTLIESDQRPASARFLMRLAEIYDLNIAEL 67 >gi|310825965|ref|YP_003958322.1| hypothetical protein ELI_0340 [Eubacterium limosum KIST612] gi|308737699|gb|ADO35359.1| hypothetical protein ELI_0340 [Eubacterium limosum KIST612] Length = 150 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + +RK N TQ+E+A AV +ENG + + L Y +S D + Sbjct: 5 LSMNLTALRKMNQYTQEEVASRIGVSRQAVAKWENGESAPDVINCNALAEMYNVSLDDLV 64 Query: 92 -DGEVIDRRYEDVTNKKRL 109 E K + Sbjct: 65 NYNEKEKDGLAIPPKDKHM 83 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L ++RK +Q E +G+ ++ +E G + P++ + ++ LD Sbjct: 3 NHLSMNLTALRKMNQYTQEEVASRIGVSRQAVAKWENGESAPDVINCNALAEMYNVSLDD 62 Query: 172 IYFGDEVIVP 181 + +E Sbjct: 63 LVNYNEKEKD 72 >gi|307352509|ref|YP_003893560.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307155742|gb|ADN35122.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 64 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R ++ TQ+ +A + E G S+ A + + + + ++ Sbjct: 3 NRIKVFRAMHDLTQEGLAKELGVTRQTILAIEKGKYDPSLDLAFKIAKYFNVKIEEVFVY 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R ++Q K LG+ T+ E+G+ P + A KI + ++ ++ Sbjct: 1 MKNRIKVFRAMHDLTQEGLAKELGVTRQTILAIEKGKYDPSLDLAFKIAKYFNVKIEEVF 60 >gi|304395821|ref|ZP_07377703.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304356190|gb|EFM20555.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 232 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 29/80 (36%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 Y ++G RI+ RK N TQ+ +A A V +E + L + + Sbjct: 15 YMMNMGERIRLKRKELNLTQQALAEKAGVNRVTVTGWEKDDYQPNGANLQALADALKCDP 74 Query: 88 DWIYDGEVIDRRYEDVTNKK 107 W+ G+ + + Sbjct: 75 TWLVSGKGESISSPLLRPVQ 94 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R++ RK+ ++Q + G+ T++ +E+ P + + K Sbjct: 16 MMNMGERIRLKRKELNLTQQALAEKAGVNRVTVTGWEKDDYQPNGANLQALADALKCDPT 75 Query: 171 WIYFGDEVIVPKSIKR 186 W+ G + + R Sbjct: 76 WLVSGKGESISSPLLR 91 >gi|258516791|ref|YP_003193013.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780496|gb|ACV64390.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 109 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 35/80 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK++RK T +++A ++ + ++ EN S + + EI+ Sbjct: 8 DIGKRIKELRKTRKLTTRQLADLSDISQPVISRLENNERSADVELIKRICKALEITLQDF 67 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 + + ++ + +D Sbjct: 68 FTTQEPEQEPLPPEAHRVID 87 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K +RK + ++ + L + +S E +++ ++I + + L Sbjct: 7 MDIGKRIKELRKTRKLTTRQLADLSDISQPVISRLENNERSADVELIKRICKALEITLQD 66 Query: 172 IYF 174 + Sbjct: 67 FFT 69 >gi|163813865|ref|ZP_02205259.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC 27759] gi|158450735|gb|EDP27730.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC 27759] Length = 351 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK+ RK TQ+++A AVN +E G I L +I + ++ Sbjct: 3 IGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNTYPDISLLPALARLLKIDMNELF 62 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 38/73 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K+ RK G++Q + LG+ ++ +E+G T P+I + ++ K ++ Sbjct: 1 MRIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNTYPDISLLPALARLLKIDMNE 60 Query: 172 IYFGDEVIVPKSI 184 ++ E + K I Sbjct: 61 LFSFHEELTEKEI 73 >gi|153940942|ref|YP_001392536.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936838|gb|ABS42336.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320522|gb|ADG00900.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 189 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 38/89 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R T KE++ N ++ E G+ + +I + E ++S + Sbjct: 4 DIGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +++ + +K + +K Sbjct: 64 FQAPKKNKKIVLRSYEKEILQVENNRFIK 92 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K +R +K ++ E + + LS E+G T I KI + L + + Sbjct: 7 KKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFF 64 >gi|159036046|ref|YP_001535299.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914881|gb|ABV96308.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 191 Score = 68.4 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD- 88 ++G I+D+R+ + ++++ A ++ E G+ S L + +S Sbjct: 8 PNIGGFIRDLRRNAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVSTPA 67 Query: 89 -WIYDGEVIDRRYEDVTNKKRLDP 111 ++ G + DR + V DP Sbjct: 68 MYLRAGLLDDREGQGVLAAIAADP 91 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG ++ +R++ +S + + G+ N LS E+G P + +++ + Sbjct: 6 DLPNIGGFIRDLRRNAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVST 65 >gi|307710145|ref|ZP_07646589.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619125|gb|EFN98257.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 108 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 44/107 (41%), Gaps = 1/107 (0%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +++ +I+D+R + TQ+E+A N ++ EN + S+ + + + E Sbjct: 1 MDDILENISNQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALE 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQI 130 + + + + E + ++ + + + + +SQ Sbjct: 61 VPLSDFFLPYSVPQDTEMMELLLKIQKHPQHKMIVHKVMEILELSQD 107 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R K ++Q E + + +S E ++ KI + L + Sbjct: 10 NQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEVPLSDFF 67 >gi|293570577|ref|ZP_06681629.1| prophage Lp2 protein 9 [Enterococcus faecium E980] gi|291609365|gb|EFF38635.1| prophage Lp2 protein 9 [Enterococcus faecium E980] Length = 126 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD+ RI D+R+ + Q E+ +SA+N ENG S L + ++ D+ Sbjct: 3 KDLVNRIIDLREKRDWNQAELGRKIGLEKSAMNKIENGTRKVSTEELQKLAEVFNVTTDY 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPY 112 + G + D + LD Sbjct: 63 LL-GRNQTPEWADENDLVELDKM 84 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ +R+ + +Q E G+ +G+ S ++ E G + +K+ +V D++ Sbjct: 7 NRIIDLREKRDWNQAELGRKIGLEKSAMNKIENGTRKVSTEELQKLAEVFNVTTDYLLGR 66 Query: 176 DEVIV 180 ++ Sbjct: 67 NQTPE 71 >gi|256964305|ref|ZP_05568476.1| cro/CI family transcriptional regulator [Enterococcus faecalis HIP11704] gi|307271874|ref|ZP_07553142.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|256954801|gb|EEU71433.1| cro/CI family transcriptional regulator [Enterococcus faecalis HIP11704] gi|306511380|gb|EFM80382.1| helix-turn-helix protein [Enterococcus faecalis TX0855] Length = 156 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 66 WLLHGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 115 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD 176 +DW+ GD Sbjct: 61 DTTVDWLLHGD 71 >gi|229551472|ref|ZP_04440197.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540781|ref|YP_003175280.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|229315155|gb|EEN81128.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257152457|emb|CAR91429.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] Length = 70 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R ++ TQ+++A V+ ENG + S+ A L + + + + I+ Sbjct: 3 NRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIFID 62 Query: 94 EVIDRR 99 E D + Sbjct: 63 ESADSK 68 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++++R ++Q + L + T+S+ E GR P + A K+ V ++ I+ Sbjct: 1 MENRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIF 60 Query: 174 FGD 176 + Sbjct: 61 IDE 63 >gi|227821987|ref|YP_002825958.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227340987|gb|ACP25205.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 466 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +RK TQ MA + S + L E + L L Y+I + Sbjct: 8 LGPRLRRLRKDLGLTQAHMAADLDVSPSYIALMERNQRPVTAEVLLRLAKAYKIDLSSLA 67 Query: 92 DGEVIDRRYEDVTNKKR 108 + D K Sbjct: 68 EESGSDLIARLQAAMKD 84 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ +RKD G++Q L + S ++ E+ + + ++ + K L + Sbjct: 12 LRRLRKDLGLTQAHMAADLDVSPSYIALMERNQRPVTAEVLLRLAKAYKIDLSSL 66 >gi|217965166|ref|YP_002350844.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|217334436|gb|ACK40230.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|307570274|emb|CAR83453.1| DNA-binding protein [Listeria monocytogenes L99] Length = 169 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKS 183 G+ V+V K Sbjct: 61 L-GETVMVSKV 70 >gi|297585237|ref|YP_003701017.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143694|gb|ADI00452.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 195 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 60/170 (35%), Gaps = 25/170 (14%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWIYD 92 +K +RK + +++A + S ++ EN M ST++ L + ++S +++ Sbjct: 4 DNLKKLRKERGMSMRKLAELSGVSRSTLHDIENLNMKSTTLNTLEKLADALDVSVNYLI- 62 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 +I ++ K+ MS E + + I Sbjct: 63 ------------------VESIEHLIEEYLKEAKMSHSELAHKADLKLEYIQKL--ADVI 102 Query: 153 PEI---KPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 P++ + RKI ++ ++D + P + + K+D Sbjct: 103 PDMEDYENVRKIARIMHANVDELIASLAKQEPPVYENLNPTLPEEDFKED 152 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLDW 171 + LK +RK++GMS + +L G+ STL + E + K+ +++ Sbjct: 1 MLKDNLKKLRKERGMSMRKLAELSGVSRSTLHDIENLNMKSTTLNTLEKLADALDVSVNY 60 Query: 172 IYFGD-EVIVPKSIKRAKGNQSSKKSKKDKK 201 + E ++ + +K AK + S K D K Sbjct: 61 LIVESIEHLIEEYLKEAKMSHSELAHKADLK 91 >gi|153812929|ref|ZP_01965597.1| hypothetical protein RUMOBE_03336 [Ruminococcus obeum ATCC 29174] gi|149831007|gb|EDM86097.1| hypothetical protein RUMOBE_03336 [Ruminococcus obeum ATCC 29174] Length = 279 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRN 81 ++ + + R+ ++RK ++ +QK++A + S ++ E+G + +I + Sbjct: 4 SDLIEDETSLAYRLSNLRKDHDLSQKQLADQLHVTHSQISRIESGETKNPNISIVIDAAR 63 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +S D++ I ++ RL A+ + Sbjct: 64 FFHVSTDYLLGITQITSPKSYDISELRLSEEAVTRLI 100 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKH 168 D ++ RL ++RKD +SQ + L + +S +S E G T P I + Sbjct: 9 DETSLAYRLSNLRKDHDLSQKQLADQLHVTHSQISRIESGETKNPNISIVIDAARFFHVS 68 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 D++ ++ PKS ++ S + + Sbjct: 69 TDYLLGITQITSPKSYDISELRLSEEAVTR 98 >gi|254975493|ref|ZP_05271965.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255092881|ref|ZP_05322359.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255314622|ref|ZP_05356205.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255517296|ref|ZP_05384972.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|255650403|ref|ZP_05397305.1| putative phage repressor [Clostridium difficile QCD-37x79] gi|260683516|ref|YP_003214801.1| putative phage repressor [Clostridium difficile CD196] gi|260687176|ref|YP_003218310.1| putative phage repressor [Clostridium difficile R20291] gi|306520382|ref|ZP_07406729.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|260209679|emb|CBA63401.1| putative phage repressor [Clostridium difficile CD196] gi|260213193|emb|CBE04666.1| putative phage repressor [Clostridium difficile R20291] Length = 169 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 2 LSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKSIKRAK 188 E IV + K Sbjct: 61 LG--ETIVESEVDSLK 74 >gi|301062224|ref|ZP_07202901.1| helix-turn-helix protein [delta proteobacterium NaphS2] gi|300443656|gb|EFK07744.1| helix-turn-helix protein [delta proteobacterium NaphS2] Length = 180 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I+ RK N T K +A A E ++ EN + S S+ + + N ++ + Sbjct: 2 NLGPLIRRHRKDRNLTLKAIAEKAGISEGFMSQVENNVKSPSVDTLVKICNAIGVNAGDL 61 Query: 91 YD 92 + Sbjct: 62 LN 63 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 20/56 (35%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ RKD+ ++ + G+ +S E P + KI + + Sbjct: 7 IRRHRKDRNLTLKAIAEKAGISEGFMSQVENNVKSPSVDTLVKICNAIGVNAGDLL 62 >gi|295101241|emb|CBK98786.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 74 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 RIK +R ++ Q ++A + ++ + +E G + + L Y++ ++I Sbjct: 5 ERIKALRSDHDLNQTQVARAIHVAQTTYSDYEKGKVRIPVECLIQLAKFYDVDMNYI 61 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 35/70 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R+K++R D ++Q + + + + +T S+YE+G+ ++ ++ + +++ Sbjct: 1 MLYTERIKALRSDHDLNQTQVARAIHVAQTTYSDYEKGKVRIPVECLIQLAKFYDVDMNY 60 Query: 172 IYFGDEVIVP 181 I + + P Sbjct: 61 ITGVSDTLQP 70 >gi|323343170|ref|ZP_08083401.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463234|gb|EFY08429.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 127 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K IR TQ+E+A N + AV +E G+ + I + + E IS + + Sbjct: 4 ANLKKIRLKRKLTQRELAKRVNYSQQAVAKWEVGISNPDISNLVKICEELNISVECLLCQ 63 Query: 94 EVIDRRYEDVTN 105 + + D + Sbjct: 64 KPKHMQEFDEWS 75 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A LK IR + ++Q E K + ++ +E G + P+I KI + ++ + Sbjct: 4 ANLKKIRLKRKLTQRELAKRVNYSQQAVAKWEVGISNPDISNLVKICEELNISVECLL 61 >gi|255280904|ref|ZP_05345459.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268352|gb|EET61557.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 169 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 16/152 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK IRK+ +Q+E+A+ N + V+ +E G+ + L E + Sbjct: 2 LSENIKAIRKSKGLSQQELAVRLNVVRQTVSKWEQGLSVPDSDVLISLSEVLETPVSTLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS----IRKDKGMSQIEFGKLLGMPNSTLSNYE 147 GE + D I +L RK S I +L + + L E Sbjct: 62 -GETVMETEADTLKAISEKLEVINLQLAQRKSTRRKIIYWSLISLCAILVIVFAVLLELE 120 Query: 148 Q---GRTIPEIKPARKIKQVTKK---HLDWIY 173 G + + A V +W++ Sbjct: 121 SPYLGWNYSDPETA-----VLGVLFHSFEWLF 147 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ + +V + + + Sbjct: 1 MLSENIKAIRKSKGLSQQELAVRLNVVRQTVSKWEQGLSVPDSDVLISLSEVLETPVSTL 60 Query: 173 YFGDEVIVPK 182 G+ V+ + Sbjct: 61 L-GETVMETE 69 >gi|118587639|ref|ZP_01545049.1| putative DNA-binding protein [Stappia aggregata IAM 12614] gi|118439261|gb|EAV45892.1| putative DNA-binding protein [Stappia aggregata IAM 12614] Length = 185 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 32/85 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +D+ R+ D+R+A N +E+A + ++ E G S + L + + Sbjct: 1 MSNLDQDLARRLTDLRRARNWPLEELAKRTGISRATLSRVERGDTSPTANVLGKLASAFG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +S ++ + + Sbjct: 61 LSMAELFGSASSTVERLVPREAQAV 85 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL +R+ + E K G+ +TLS E+G T P K+ + ++ Sbjct: 10 RRLTDLRRARNWPLEELAKRTGISRATLSRVERGDTSPTANVLGKLASAFGLSMAELFGS 69 Query: 176 DEVIVPKSIKR 186 V + + R Sbjct: 70 ASSTVERLVPR 80 >gi|190015931|ref|YP_001965139.1| putative transcription regulator [Rhodococcus sp. NS1] gi|114796771|gb|ABI79364.1| putative transcription regulator [Rhodococcus sp. NS1] Length = 161 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R Q E A A + +E+G S + + ++ + Sbjct: 27 LRQARLDAGFVQTETARLAKVGTETLRRWESGAASPQVDLLARVVEVLGVTIADVVLVPE 86 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 DR D R G++Q + G G+P T+S+ E+G Sbjct: 87 DDRYPGD------------------FRVLLGLTQPQLGAKAGLPTQTVSSVERGVVSLSD 128 Query: 156 KPARKIKQVTKKHLDWI 172 A+K+ D + Sbjct: 129 AAAQKLSAALGISEDEL 145 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 7/88 (7%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 +++ PE +Y D R TQ ++ A V+ E G+ S S A Sbjct: 80 DVVLVPEDDRYPGDF-------RVLLGLTQPQLGAKAGLPTQTVSSVERGVVSLSDAAAQ 132 Query: 78 YLRNEYEISFDWIYDGEVIDRRYEDVTN 105 L IS D + R Sbjct: 133 KLSAALGISEDELRAAHERARNRPPGAP 160 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL-DW 171 L+ R D G Q E +L + TL +E G P++ ++ +V + D Sbjct: 22 FSPDALRQARLDAGFVQTETARLAKVGTETLRRWESGAASPQVDLLARVVEVLGVTIADV 81 Query: 172 IYFGDEVIVP 181 + ++ P Sbjct: 82 VLVPEDDRYP 91 >gi|170718159|ref|YP_001785187.1| phage repressor [Haemophilus somnus 2336] gi|168826288|gb|ACA31659.1| putative phage repressor [Haemophilus somnus 2336] Length = 235 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 36/87 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI++ R+ N T+ E+A + SA+ +E + + NE ++ +++ Sbjct: 11 IGNRIREQRERLNLTRPELAKAVDVSLSALQGWEMNEREPQASMIITIANELGVTPNYLL 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 GE + +++ + Sbjct: 71 TGENDQPKKTIERAVEKVKDLTENVVI 97 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R+ +++ E K + + S L +E P+ I +++ G Sbjct: 13 NRIREQRERLNLTRPELAKAVDVSLSALQGWEMNEREPQASMIITIANELGVTPNYLLTG 72 Query: 176 DEVIVPKSIKRA 187 + K+I+RA Sbjct: 73 ENDQPKKTIERA 84 >gi|312131969|ref|YP_003999309.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311908515|gb|ADQ18956.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 109 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D GT + D+RK +Q ++A ++ + +E SI A + + E+S D++ Sbjct: 2 DFGTTVADLRKEKGISQTDLAAQLGIHKNVLGRYERNEVFPSIDIARKIADILEVSLDYL 61 Query: 91 YDGEV 95 E Sbjct: 62 TGKED 66 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G + +RK+KG+SQ + LG+ + L YE+ P I ARKI + + LD+ Sbjct: 1 MDFGTTVADLRKEKGISQTDLAAQLGIHKNVLGRYERNEVFPSIDIARKIADILEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + G E + I + + +K + D+ Sbjct: 61 L-TGKEDVQIDKITSQRILEVAKFEEADRNH 90 >gi|261369118|ref|ZP_05982001.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282568735|gb|EFB74270.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 103 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 3/93 (3%) Query: 44 NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 +Q +MA +S++N +ENG S S+ + +++S D+I+ + Sbjct: 2 GFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLDYIFARTDKPQGETYH 61 Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 K + L+ + Q + L Sbjct: 62 FKPKAVPE---REELRQFIEMCFDPQSPMNEKL 91 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 126 GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G SQ++ + LG S+++ YE G++ P ++ R+ LD+I+ Sbjct: 2 GFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLDYIF 49 >gi|221316990|ref|YP_002533134.1| transcriptional regulator [Bacillus cereus Q1] gi|221243322|gb|ACM16030.1| transcriptional regulator [Bacillus cereus Q1] Length = 108 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 30/82 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G R+ RK Q+++A N + +E G I + + + Y IS D Sbjct: 1 MQTLGERLLYFRKNRKLRQEDIADHLNVARATYTNWEAGRAEPDIATLIKISDFYTISID 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLD 110 + +V + D Sbjct: 61 NLVGRTYRIEPQFEVIKDQIKD 82 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RL RK++ + Q + L + +T +N+E GR P+I KI +D Sbjct: 1 MQTLGERLLYFRKNRKLRQEDIADHLNVARATYTNWEAGRAEPDIATLIKISDFYTISID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + G + + K + +K K++ N Sbjct: 61 NLV-GRTYRIEPQFEVIKDQIKDLQPEKQKRALN 93 >gi|209544910|ref|YP_002277139.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532587|gb|ACI52524.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 72 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +R+ TQ+E+ + + ++ E G + ++ L +S Sbjct: 4 RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHV 63 Query: 89 WIYDGEV 95 + E Sbjct: 64 ELVSPED 70 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +R++KG++Q E G LS+ E+GR P + ++ Q + ++ Sbjct: 13 RLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHVELVSPED 70 >gi|317407356|gb|EFV87322.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 63 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+D+R +Q +A N VN E G S+ A + + + I+ Sbjct: 3 NRIRDLRAERGWSQAALAEQLNVSRQTVNAIETGRYDPSLPLAFAIARVFGQPIEAIFQ 61 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R ++G SQ + L + T++ E GR P + A I +V + ++ I+ Sbjct: 1 MKNRIRDLRAERGWSQAALAEQLNVSRQTVNAIETGRYDPSLPLAFAIARVFGQPIEAIF 60 >gi|307130384|ref|YP_003882400.1| transcriptional regulator [Dickeya dadantii 3937] gi|306527913|gb|ADM97843.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 188 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 30/86 (34%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + K + RI+ R+ + ++A A+ + ++ E G S + L Sbjct: 2 SKETNMDKRIAARIRSERENRGWSLSDLAEKASVSRAMIHKIERGESSPTANLLGKLSGA 61 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKR 108 + +S + + + N + Sbjct: 62 FGLSMSTLLARAEMKQGRLLRVNDQP 87 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 ++ + +D I AR++S R+++G S + + + + + E+G + P K+ Sbjct: 1 MSKETNMD-KRIAARIRSERENRGWSLSDLAEKASVSRAMIHKIERGESSPTANLLGKLS 59 Query: 163 QVTKKHLDWIYFGDEV 178 + + E+ Sbjct: 60 GAFGLSMSTLLARAEM 75 >gi|293553401|ref|ZP_06674032.1| transcriptional regulator, xre family [Enterococcus faecium E1039] gi|291602414|gb|EFF32635.1| transcriptional regulator, xre family [Enterococcus faecium E1039] Length = 221 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I+ R+ N TQKE+ + ++ +EN + L + D Sbjct: 2 NIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPID 59 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++++ R++ ++Q E G+ +G+ + T+S++E RT+P+++ + Q +D+ Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 172 --IYFGDEVIVPKSIKRAKGNQSSKKSK 197 I E I P N+ S SK Sbjct: 61 PPIESATESIEPTLPDEPLVNKKSYLSK 88 >gi|282916348|ref|ZP_06324110.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139] gi|282319788|gb|EFB50136.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139] Length = 179 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+ N TQ+E+A + + ++ E+ S S+ L + + Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + D Y G L + Sbjct: 62 FKDSENEKVLYKKEEQVIYDEYDEGYILNWL 92 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R+ K ++Q E + + +S E P ++ I +V Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + E K + Sbjct: 61 FFKDSENEKVLYKKEEQ 77 >gi|255323002|ref|ZP_05364138.1| putative ankyrin repeat protein [Campylobacter showae RM3277] gi|255299864|gb|EET79145.1| putative ankyrin repeat protein [Campylobacter showae RM3277] Length = 412 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IKD R+ N Q+E+A N ++ +EN S L L + + +S D + Sbjct: 6 IAKNIKDAREGINMLQQELADKLNITRPVISNWENAKSEPSSTQLLKLADIFGVSADRLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ V + + L Sbjct: 66 GRNLDSKKIIVVDTSALIKKPFLPKEL 92 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ I +K R+ M Q E L + +SN+E ++ P K+ + Sbjct: 1 MNLNTIAKNIKDAREGINMLQQELADKLNITRPVISNWENAKSEPSSTQLLKLADIFGVS 60 Query: 169 LDWIY 173 D + Sbjct: 61 ADRLL 65 >gi|256423770|ref|YP_003124423.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038678|gb|ACU62222.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 114 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ ++RK +Q E+A + + +E SI A + E+S D++ Sbjct: 6 FGKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIAAALEVSLDYLV 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G RL +RKDK +SQ E K +G+ + + YE+ P I+ A I + Sbjct: 1 MKQITFGKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIAAALEVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 LD++ ++++ ++I + K S +DK + Sbjct: 61 LDYLVGNTDLLLDQTILD-RIMDIQKLSDQDKADA 94 >gi|254993818|ref|ZP_05276008.1| DNA-binding protein [Listeria monocytogenes FSL J2-064] Length = 169 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKS 183 G+ V+V K Sbjct: 61 L-GETVMVSKV 70 >gi|47091696|ref|ZP_00229492.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|254853835|ref|ZP_05243183.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|254933600|ref|ZP_05266959.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|255521409|ref|ZP_05388646.1| hypothetical protein LmonocFSL_09325 [Listeria monocytogenes FSL J1-175] gi|300765051|ref|ZP_07075038.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|47020015|gb|EAL10752.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|258607218|gb|EEW19826.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|293585163|gb|EFF97195.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|300514176|gb|EFK41236.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|328467297|gb|EGF38377.1| hypothetical protein LM1816_00625 [Listeria monocytogenes 1816] gi|328475606|gb|EGF46359.1| hypothetical protein LM220_07617 [Listeria monocytogenes 220] gi|332311156|gb|EGJ24251.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 169 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKS 183 G+ V+V K Sbjct: 61 L-GETVMVSKV 70 >gi|325917919|ref|ZP_08180091.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325535865|gb|EGD07689.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 66 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R++++R++N +Q E+A +N E G S+ A + + + ++ Sbjct: 3 SRVRELRESNGWSQGELAEQLGVSRQTINALETGKYDPSLPLAFRIARLFGEPIEQVFLY 62 Query: 94 EVID 97 E + Sbjct: 63 EGNE 66 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD--W 171 + +R++ +R+ G SQ E + LG+ T++ E G+ P + A +I ++ + ++ + Sbjct: 1 MNSRVRELRESNGWSQGELAEQLGVSRQTINALETGKYDPSLPLAFRIARLFGEPIEQVF 60 Query: 172 IYFGDE 177 +Y G+E Sbjct: 61 LYEGNE 66 >gi|293376903|ref|ZP_06623120.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644449|gb|EFF62542.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 192 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 42/91 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K R+ G+SQ + + L + ++ +E + IP+I + I ++ LD Sbjct: 3 MTLGEKIKKYRQAGGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDS 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + DE I +K + KK+ K + Sbjct: 63 LLAMDEKIGSIVLKEEIDIEKYKKTGKARSK 93 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK R+A +Q++++ + AV +E+ I + + +S D + Sbjct: 5 LGEKIKKYRQAGGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDSLL 64 >gi|292653871|ref|YP_003533769.1| Helix-turn-helix, putative [Haloferax volcanii DS2] gi|291369721|gb|ADE01949.1| Helix-turn-helix, putative [Haloferax volcanii DS2] Length = 66 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I+ R + TQ+E+A + E+ S+ A L ++ S + ++ E Sbjct: 5 IRVKRAEEHITQEELATAVGVSRQTIYAIEHSRYDPSLELAFKLARYFDCSVEELFTPEF 64 Query: 96 I 96 Sbjct: 65 D 65 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 29/63 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ R ++ ++Q E +G+ T+ E R P ++ A K+ + ++ ++ Sbjct: 1 MENDIRVKRAEEHITQEELATAVGVSRQTIYAIEHSRYDPSLELAFKLARYFDCSVEELF 60 Query: 174 FGD 176 + Sbjct: 61 TPE 63 >gi|148272654|ref|YP_001222215.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830584|emb|CAN01520.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 475 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK T + + A L S +++ ENG T + + + + Sbjct: 6 IGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALGVDVTHLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA--RLKSIRKDKGMSQIEFGKLLGMPN 140 + D R R ++ L ++ + + Q L+G+ Sbjct: 66 AADAPDARSALEIELDRAQRSSLYGGLGLPAVPASRALPQETLEALVGLHR 116 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG R++ RK G++ G+ G+ S LS E GR + +I Sbjct: 1 MDQLVIGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALGVD 60 Query: 169 LDWIYFGD--EVIVPKSIKRAKGNQSS 193 + + D + I+ + +SS Sbjct: 61 VTHLLAADAPDARSALEIELDRAQRSS 87 >gi|220927517|ref|YP_002504426.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219997845|gb|ACL74446.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 112 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 28/70 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ R TQ++++ S + E G S S+ + + + S +I Sbjct: 13 LGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGEKSPSVETLIDISKSLDTSISYIL 72 Query: 92 DGEVIDRRYE 101 + + E Sbjct: 73 NVPDYKMKKE 82 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 36/88 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ R KG++Q + ++ G+ S + E+G P ++ I + + +I Sbjct: 15 KKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGEKSPSVETLIDISKSLDTSISYILNV 74 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + K + S ++ K + Sbjct: 75 PDYKMKKELSDLVLLCSEANKEEIYKIT 102 >gi|110804331|ref|YP_687851.1| putative prophage repressor CI [Shigella flexneri 5 str. 8401] gi|291281104|ref|YP_003497922.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|300898212|ref|ZP_07116568.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|110613879|gb|ABF02546.1| putative prophage repressor CI [Shigella flexneri 5 str. 8401] gi|284920569|emb|CBG33631.1| putative prophage repressor [Escherichia coli 042] gi|290760977|gb|ADD54938.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|300358089|gb|EFJ73959.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|320654501|gb|EFX22535.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659998|gb|EFX27537.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. USDA 5905] gi|324019900|gb|EGB89119.1| peptidase S24-like domain protein [Escherichia coli MS 117-3] Length = 210 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+K R Q E+A + ++ ENG R+ L + +S DW+ Sbjct: 3 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 61 Query: 92 DGEVIDRRYE 101 +G Sbjct: 62 NGTSDSNVRF 71 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I +R+KS R G++Q E + +G ++ E G+T + ++ +DW Sbjct: 1 MSISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDW 59 Query: 172 IYFG 175 + G Sbjct: 60 LLNG 63 >gi|67078349|ref|YP_245967.1| transcriptional regulator [Bacillus cereus E33L] gi|66970655|gb|AAY60629.1| transcriptional regulator [Bacillus cereus E33L] Length = 87 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K IR TQ E+A N + L E G + S++ + + ++ + ++ E Sbjct: 27 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLFWEE 86 Query: 95 V 95 Sbjct: 87 D 87 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 + L+ + ++K IR +KGM+Q E KL + T+ E+G P + Sbjct: 6 DECNIYITKGINVLEASNMLTKVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSL 65 Query: 156 KPARKIKQVTKKHLDWIYFGDE 177 K +I + L+ +++ ++ Sbjct: 66 KLCIEICKSLGVTLNDLFWEED 87 >gi|420538|pir||S32822 repressor protein cI - phage 434 gi|455364|gb|AAA72530.1| cI repressor [unidentified cloning vector] gi|224174|prf||1011238A cI gene Length = 210 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+K R Q E+A + ++ ENG R+ L + +S DW+ Sbjct: 3 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 61 Query: 92 DGEVIDRRYE 101 +G Sbjct: 62 NGTSDSNVRF 71 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I +R+KS R G++Q E + +G ++ E G+T + ++ +DW Sbjct: 1 MSISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDW 59 Query: 172 IYFG 175 + G Sbjct: 60 LLNG 63 >gi|332364291|gb|EGJ42066.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 99 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N TQK++A N + A +E+G N + +S D++ Sbjct: 4 ERLKSLRLEANLTQKQVAEKLNMSQPAYQSWESGKRKPGEETLNKFANFFSVSIDYLLGK 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + E ++ + L +K Sbjct: 64 TDNRKSDEINLSEFEILYRKTSKNLTEQQK 93 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLKS+R + ++Q + + L M ++E G+ P + K +D++ Sbjct: 1 MFPERLKSLRLEANLTQKQVAEKLNMSQPAYQSWESGKRKPGEETLNKFANFFSVSIDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + I ++ +K+ K+ Sbjct: 61 LGKTDNRKSDEINLSEFEILYRKTSKN 87 >gi|295697327|ref|YP_003590565.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412929|gb|ADG07421.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 181 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 8/77 (10%), Positives = 28/77 (36%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +++ +R+ T +E+A ++ E G ++ + E+ + ++ + Sbjct: 7 KLRRVRQEKGWTIQELAEKCEVSPGLISQVERGRVVPTLTTFWRICQALEVPMHYFFEEQ 66 Query: 95 VIDRRYEDVTNKKRLDP 111 + +K + Sbjct: 67 KDESMVVRRDQRKIIHF 83 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +L+ +R++KG + E + + +S E+GR +P + +I Q + + + Sbjct: 3 FDHGKLRRVRQEKGWTIQELAEKCEVSPGLISQVERGRVVPTLTTFWRICQALEVPMHYF 62 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 + +E + R + Sbjct: 63 F--EEQKDESMVVRRDQRK 79 >gi|229017733|ref|ZP_04174622.1| Transcriptional regulator, XRE [Bacillus cereus AH1273] gi|229023949|ref|ZP_04180429.1| Transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228737327|gb|EEL87842.1| Transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228743549|gb|EEL93660.1| Transcriptional regulator, XRE [Bacillus cereus AH1273] Length = 205 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 31/183 (16%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 25 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGNANPSLNVLELIAKALNVPLFTLF 84 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M E S Sbjct: 85 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNEHA---NTTES 141 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTK----KHLD----WIYFGDEVIVPKSIKRAKGNQSS 193 S+ + +I V K L+ ++ GD V +P ++K N+S Sbjct: 142 HYSH----------ENKEEIAVVMKGEVYVELEGREYFLEEGDVVRIPPNVKHRFLNKSD 191 Query: 194 KKS 196 + + Sbjct: 192 EMN 194 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 1/106 (0%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + Y+ + Y +G + S RK M+ EF G+ S +S E+G P Sbjct: 5 KEQKMYYDGRKEVVTMIHYRLGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGNANP 64 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + I + L ++ D + I + K + + D Sbjct: 65 SLNVLELIAKALNVPLFTLFIND-IDTDSLISKKKDRKKVYRENND 109 >gi|229103032|ref|ZP_04233721.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228680447|gb|EEL34635.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] Length = 114 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +K +RK+ + Q+++A N S +N +ENG + L + + ++ D + Sbjct: 8 LKSLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLDVL 62 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 LKS+RK + + Q + L + S ++NYE G + P++ ++ LD Sbjct: 1 MNTFSETLKSLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLD 60 Query: 171 WI 172 + Sbjct: 61 VL 62 >gi|227552248|ref|ZP_03982297.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257895169|ref|ZP_05674822.1| helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|293377799|ref|ZP_06623987.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|227178619|gb|EEI59591.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257831734|gb|EEV58155.1| helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|292643580|gb|EFF61702.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 222 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I+ R+ N TQKE+ + ++ +EN + L + D Sbjct: 2 NIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPID 59 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++++ R++ ++Q E G+ +G+ + T+S++E RT+P+++ + Q +D+ Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 172 --IYFGDEVIVPKSIKRAKGNQSSKKSK 197 I E I P N+ S SK Sbjct: 61 PSIESATESIEPTLPDEPLVNKKSYSSK 88 >gi|163745179|ref|ZP_02152539.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161381997|gb|EDQ06406.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 183 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG +++ IRK + +Q+E+A A ++L E S S+ L + IS Sbjct: 2 NVGDKLRAIRKKHGLSQRELAAKAGLTNGTISLIEKNRTSPSVASLKSLLDAIPISMAEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + D + + L + + Sbjct: 62 FSILEEDDSAKVFYRAQELTEISPSHQ 88 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +L++IRK G+SQ E G+ N T+S E+ RT P + + + + Sbjct: 1 MNVGDKLRAIRKKHGLSQRELAAKAGLTNGTISLIEKNRTSPSVASLKSLLDAIPISMAE 60 Query: 172 IYFG-DEVIVPKSIKRAKG 189 + +E K RA+ Sbjct: 61 FFSILEEDDSAKVFYRAQE 79 >gi|187919154|ref|YP_001888185.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717592|gb|ACD18815.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 190 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 37/91 (40%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ T + ++G++I+ +R+ +T + A A + ++ E G+ S SI Sbjct: 1 MVTTIQKSNPALEIGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAG 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + + ++ + D +R K Sbjct: 61 IAHALGVTVQYFVDTPSEERCVSRGDQLKFF 91 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG++++++R+ + + G+ LS E+G P I I + + Sbjct: 12 LEIGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 71 Query: 172 IY 173 Sbjct: 72 FV 73 >gi|159898456|ref|YP_001544703.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891495|gb|ABX04575.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 80 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+ +R N TQ ++ + E G + ++ A + + +++ D + Sbjct: 6 LSNRIRLLRFINGEMTQADLGQRIGVTRQTIAAIEAGKYAPTLEAAFRIAHVFQVPLDEV 65 Query: 91 YDG 93 + Sbjct: 66 FQW 68 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R G M+Q + G+ +G+ T++ E G+ P ++ A +I V + LD ++ Sbjct: 8 NRIRLLRFINGEMTQADLGQRIGVTRQTIAAIEAGKYAPTLEAAFRIAHVFQVPLDEVF 66 >gi|56965066|ref|YP_176798.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911310|dbj|BAD65837.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 193 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 11/127 (8%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + ++ K +G ++ +R + + + +A + + E G + ++ + N Sbjct: 10 SKNQEAGKQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTLSVIWKIANG 69 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKK--RLDPYAIGARLKSIR----KDKGMSQIEF---- 132 I + E K D I L + +G Q + Sbjct: 70 LHIPITALLSFEADVAIARANKAMKLSSSDDEFIVEPLFRSQGLMECYRGYLQPQCRYES 129 Query: 133 -GKLLGM 138 LG+ Sbjct: 130 EAHRLGV 136 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R KGMS + +G+ TL EQG P + KI + + Sbjct: 21 KNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTLSVIWKIANGLHIPITALLSF 80 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + + A+ N++ K S D Sbjct: 81 E-----ADVAIARANKAMKLSSSD 99 >gi|54027801|ref|YP_122042.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54019309|dbj|BAD60678.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 152 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 22/137 (16%) Query: 36 IKDIRKAN-NKTQK---EMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K R+ + N+ + E+A A + + +E G S + + + + + Sbjct: 14 LKRAREEHPNEDLRRRAEVARLAGVGVATIQQWEAGKKSPQVNLLFRVAAVLGVPMEQLV 73 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 L+ R +GM + + G+ S++ E+G Sbjct: 74 PIPRE------------------QRYLRDWRVLRGMLESDLAARTGISGSSIGRLEEGSA 115 Query: 152 IPEIKPARKIKQVTKKH 168 + A ++ + Sbjct: 116 ALTDENANRLAEALGIT 132 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 107 KRLDPYAIGARLKSIRKDKGM----SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 +R+ A LK R++ + E +L G+ +T+ +E G+ P++ ++ Sbjct: 3 RRITRGFDPAALKRAREEHPNEDLRRRAEVARLAGVGVATIQQWEAGKKSPQVNLLFRVA 62 Query: 163 QVTKKHLDWIY 173 V ++ + Sbjct: 63 AVLGVPMEQLV 73 >gi|308071595|ref|YP_003873200.1| transcriptional regulator yazB [Paenibacillus polymyxa E681] gi|305860874|gb|ADM72662.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus polymyxa E681] Length = 114 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+++RKA TQ+++A A S + E G + S+ + + ++ Sbjct: 7 VGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALNVPAFELF 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 + R + + L Sbjct: 67 QFDENTDRKQIINELMLL 84 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK KG +Q + + G+ S + E+G ++ KI ++ Sbjct: 9 NRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALNVPAFELFQF 68 Query: 176 DEVIVPKSI 184 DE K I Sbjct: 69 DENTDRKQI 77 >gi|153810945|ref|ZP_01963613.1| hypothetical protein RUMOBE_01335 [Ruminococcus obeum ATCC 29174] gi|149832833|gb|EDM87916.1| hypothetical protein RUMOBE_01335 [Ruminococcus obeum ATCC 29174] Length = 71 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 31/66 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R ++ +QK++ + + + + +E G + I + L + Y+ + D++ Sbjct: 4 QRIQDLRIDSDLSQKKIGEILHISQRSYSHYETGSRNIPIEMLIRLADYYDTTIDYLVGR 63 Query: 94 EVIDRR 99 Sbjct: 64 TDNKEP 69 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R D +SQ + G++L + + S+YE G I+ ++ +D++ Sbjct: 1 MKFQRIQDLRIDSDLSQKKIGEILHISQRSYSHYETGSRNIPIEMLIRLADYYDTTIDYL 60 Query: 173 YFGDEVIVP 181 + P Sbjct: 61 VGRTDNKEP 69 >gi|108800307|ref|YP_640504.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119869435|ref|YP_939387.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126435930|ref|YP_001071621.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108770726|gb|ABG09448.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119695524|gb|ABL92597.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126235730|gb|ABN99130.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 193 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 30/75 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R+ T +E+A + S ++ E+G ++ + L ++ D + Sbjct: 17 KRLRELRRQRGFTLEEVAARSAIDVSTLSRLESGKRRLALDHLPRLAAALAVTTDELLRS 76 Query: 94 EVIDRRYEDVTNKKR 108 + + R Sbjct: 77 PEAEDPRVRSDSHTR 91 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 27/77 (35%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+ +R+ +G + E + STLS E G+ + ++ D + Sbjct: 16 RKRLRELRRQRGFTLEEVAARSAIDVSTLSRLESGKRRLALDHLPRLAAALAVTTDELLR 75 Query: 175 GDEVIVPKSIKRAKGNQ 191 E P+ + Sbjct: 76 SPEAEDPRVRSDSHTRH 92 >gi|330817330|ref|YP_004361035.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327369723|gb|AEA61079.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 192 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 35/75 (46%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K +RK + +++A A +S ++ E G+ + S+ A+ L + ++ + Sbjct: 5 RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLATALHVEVGQLFASD 64 Query: 95 VIDRRYEDVTNKKRL 109 ++ V +R+ Sbjct: 65 EDEKAITVVRAGERI 79 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK G+S + + G+ S LS E+G + P + A ++ + ++ DE Sbjct: 6 LKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLATALHVEVGQLFASDE 65 Query: 178 VIVPKSIKRA 187 ++ RA Sbjct: 66 DEKAITVVRA 75 >gi|326564808|gb|EGE15019.1| putative phage represso [Moraxella catarrhalis 103P14B1] Length = 109 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ R+K RKA TQK++ +SA + E+G S A+ L + + + W Sbjct: 2 ELKNRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSK-STTRAVELAHLFGVDVHW 60 Query: 90 IYDGEVIDRRYEDVTNK 106 + GE + D Sbjct: 61 LISGEGEMTKNNDKLTP 77 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK RK KG++Q + + + G+ S S E G++ A ++ + + Sbjct: 1 MELKNRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSK-STTRAVELAHLFGVDVH 59 Query: 171 WIYFGDEVIVPKSIK 185 W+ G+ + + K Sbjct: 60 WLISGEGEMTKNNDK 74 >gi|320108135|ref|YP_004183725.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926656|gb|ADV83731.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 178 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V + ++D+R N +Q+++A + ++ ENG +I L ++ + Sbjct: 65 QVASAVRDLRLVRNLSQRQLAGRMGVPRTYISKIENGKAMPTIGSLERLARALQVDISDL 124 Query: 91 YDG 93 Sbjct: 125 LRD 127 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 28/58 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R + +SQ + +G+P + +S E G+ +P I ++ + + + + Sbjct: 70 VRDLRLVRNLSQRQLAGRMGVPRTYISKIENGKAMPTIGSLERLARALQVDISDLLRD 127 >gi|289644973|ref|ZP_06477012.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505209|gb|EFD26269.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 74 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++ +R +Q ++A +N E G S+ A L + + ++ + I+ Sbjct: 3 NRLRVLRAERRWSQADLADRCRVSRQTINAIETGRYDPSLPLAFTLADIFGLAIEEIF 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R ++ SQ + + T++ E GR P + A + + ++ I+ Sbjct: 1 MKNRLRVLRAERRWSQADLADRCRVSRQTINAIETGRYDPSLPLAFTLADIFGLAIEEIF 60 Query: 174 FGD 176 D Sbjct: 61 LFD 63 >gi|259047642|ref|ZP_05738043.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035833|gb|EEW37088.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 70 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++IRKA TQ+E+A V ENG + SI A + +E+S + ++ Sbjct: 3 NRLEEIRKAKGITQEELANALEVSRQTVGSLENGRYNPSIILAFKIARFFEVSIEEVFIY 62 Query: 94 EVI 96 E Sbjct: 63 EED 65 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK KG++Q E L + T+ + E GR P I A KI + + ++ ++ Sbjct: 1 MKNRLEEIRKAKGITQEELANALEVSRQTVGSLENGRYNPSIILAFKIARFFEVSIEEVF 60 Query: 174 FGDEVIVP 181 +E Sbjct: 61 IYEEDQNE 68 >gi|229096925|ref|ZP_04227894.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|228686535|gb|EEL40444.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 114 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +K +RK+ + Q+++A N S +N +ENG + L + + ++ D + Sbjct: 8 LKSLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLDVL 62 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 LKS+RK + + Q + L + S ++NYE G + P++ ++ LD Sbjct: 1 MNTFSETLKSLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLD 60 Query: 171 WI 172 + Sbjct: 61 VL 62 >gi|229161362|ref|ZP_04289347.1| Transcriptional regulator, XRE [Bacillus cereus R309803] gi|228622176|gb|EEK79017.1| Transcriptional regulator, XRE [Bacillus cereus R309803] Length = 186 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 23/175 (13%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ + + +K+ + M K S Sbjct: 66 INDIDTDSLISKKKDRKKVYRENSDHIVYDVLTPDFMKARIEMLMMDLN---KKANTTES 122 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQS 192 S+ E+ I K +V L+ ++ GD V +P ++K N+S Sbjct: 123 HYSHEEKEE----IAVVMK-GEVY-VELEGKEYFLEEGDVVRIPPNVKHRFLNKS 171 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + Y +G + S RK M+ EF G+ S +S E+G P + I + Sbjct: 1 MIHYRLGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 L ++ D + I + K + + D Sbjct: 61 LFTLFIND-IDTDSLISKKKDRKKVYRENSD 90 >gi|169334849|ref|ZP_02862042.1| hypothetical protein ANASTE_01255 [Anaerofustis stercorihominis DSM 17244] gi|169257587|gb|EDS71553.1| hypothetical protein ANASTE_01255 [Anaerofustis stercorihominis DSM 17244] Length = 371 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + + R+ TQ+++A +++V+ +E G I L Y IS D + Sbjct: 5 NISNILIEKRREKKLTQEDVANYMGVSKASVSKWETGGSYPDIELLPKLATFYNISLDEL 64 Query: 91 YDGEVI 96 Sbjct: 65 LGYNPN 70 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I L R++K ++Q + +G+ +++S +E G + P+I+ K+ Sbjct: 1 MKEINISNILIEKRREKKLTQEDVANYMGVSKASVSKWETGGSYPDIELLPKLATFYNIS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 LD + + + + I++ Sbjct: 61 LDELLGYNPNLTKEEIRK 78 >gi|319764265|ref|YP_004128202.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] gi|317118826|gb|ADV01315.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 118 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 Q K +G IK R+ + +QK +A E + +E G + + + ++ Sbjct: 5 EQRLKMIGASIKRKREESGYSQKLVAEHLGITEKTCSEYERGKTQPPLLKLIAIAEFFQC 64 Query: 86 SFDWIYDG 93 D + G Sbjct: 65 GLDELLVG 72 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IGA +K R++ G SQ + LG+ T S YE+G+T P + I + + LD + Sbjct: 10 MIGASIKRKREESGYSQKLVAEHLGITEKTCSEYERGKTQPPLLKLIAIAEFFQCGLDEL 69 Query: 173 YFG 175 G Sbjct: 70 LVG 72 >gi|320007854|gb|ADW02704.1| transcriptional regulator, XRE family [Streptomyces flavogriseus ATCC 33331] Length = 509 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 EDDYLARIGKLIRDARQHRGWTQSQLAEALATSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + L S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQSQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|257440134|ref|ZP_05615889.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] gi|257197486|gb|EEU95770.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] Length = 109 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 9/116 (7%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + ++G I+ R+ TQ ++ + ++ E G S+ L Sbjct: 3 EKKDINIEIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLL 62 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 IS D I G ++ D + + Q +L M Sbjct: 63 GISADRIIFGTDEPEAEALALARRISDIKP---------EYRQQVQELLSAILNMS 109 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ R+ G +Q ++LGM + LS E+G + ++ +++ ++ D I FG Sbjct: 14 NIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGISADRIIFGT 73 Query: 177 EVIVPKSIKRAKGNQSSK 194 + +++ A+ K Sbjct: 74 DEPEAEALALARRISDIK 91 >gi|228965379|ref|ZP_04126471.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar sotto str. T04001] gi|228794369|gb|EEM41883.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar sotto str. T04001] Length = 186 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 13/124 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + S Sbjct: 66 INEIDTDSLISKKKDRKKVYRENNNHIVYDVLTPDFMKARIEMLMMDLNKQA---NTTQS 122 Query: 142 TLSN 145 S+ Sbjct: 123 HYSH 126 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ +E+ Sbjct: 13 YRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFI-NEIDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + + Sbjct: 72 DSLISKKKDRKKVYRENNN 90 >gi|168179867|ref|ZP_02614531.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182669352|gb|EDT81328.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 148 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK + +Q+++A + V+ +E + A L Y +S+D++ Sbjct: 3 LGEKLLYLRKKASLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDYLI 62 Query: 92 DGEVID 97 I Sbjct: 63 SENYIS 68 Score = 57.7 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 35/65 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +L +RK +SQ + + L + T+S +E +T+PE+ A+ + ++ D+ Sbjct: 1 MSLGEKLLYLRKKASLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 172 IYFGD 176 + + Sbjct: 61 LISEN 65 >gi|148381133|ref|YP_001255674.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153930841|ref|YP_001385508.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937138|ref|YP_001388914.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168179166|ref|ZP_02613830.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|168183501|ref|ZP_02618165.1| DNA-binding protein [Clostridium botulinum Bf] gi|226950613|ref|YP_002805704.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|148290617|emb|CAL84746.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152926885|gb|ABS32385.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933052|gb|ABS38551.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|182669975|gb|EDT81951.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182673310|gb|EDT85271.1| DNA-binding protein [Clostridium botulinum Bf] gi|226843650|gb|ACO86316.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|322807499|emb|CBZ05074.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 189 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 38/89 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R T KE++ N ++ E G+ + +I + E ++S + Sbjct: 4 DIGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +++ + +K + +K Sbjct: 64 FQAPKKNKKIVLRSYEKEILQVENNRFIK 92 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K +R +K ++ E + + LS E+G T I KI + L + + Sbjct: 7 KKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFF 64 >gi|91209339|ref|YP_539325.1| putative transcription regulator [Escherichia coli UTI89] gi|91070913|gb|ABE05794.1| putative transcription regulator [Escherichia coli UTI89] Length = 154 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 5/135 (3%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L + Sbjct: 2 KKSLRIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALS 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + + + + ++ D L S R + + S Sbjct: 62 VEPWQLLVFDSSEENDPELLVPYAADGTCFNPELASSRDGSFAVGDKAAQK-----RFGS 116 Query: 145 NYEQGRTIPEIKPAR 159 E + ++ A+ Sbjct: 117 FIEALEYLRSMETAK 131 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+K +R GMSQ F G S +S E+G + + + Sbjct: 7 IQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALSVEPWQ 66 Query: 172 IYFGD--EVIVPKSI 184 + D E P+ + Sbjct: 67 LLVFDSSEENDPELL 81 >gi|323706165|ref|ZP_08117733.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534458|gb|EGB24241.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 118 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 29/80 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RI+ R+ T+++ A + E S++ + + +S D+ Sbjct: 12 KKVGMRIRAERERIGLTREQFAEAVGVSAMYIGHIERAQRVMSLKTFVRIAKSLHVSTDY 71 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + G + + L Sbjct: 72 LLFGIGEAENKNNDGKEDAL 91 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 35/68 (51%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 D +G R+++ R+ G+++ +F + +G+ + + E+ + + +K +I + Sbjct: 8 DFDLKKVGMRIRAERERIGLTREQFAEAVGVSAMYIGHIERAQRVMSLKTFVRIAKSLHV 67 Query: 168 HLDWIYFG 175 D++ FG Sbjct: 68 STDYLLFG 75 >gi|293378126|ref|ZP_06624295.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|292642990|gb|EFF61131.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 180 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 32/72 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEF 61 Query: 91 YDGEVIDRRYED 102 + E + + Sbjct: 62 FHQEAANLQVVY 73 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|320012087|gb|ADW06937.1| Cupin 2 conserved barrel domain protein [Streptomyces flavogriseus ATCC 33331] Length = 194 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ Q + + +K R T +A A + E + S+ + L + Sbjct: 3 DLDQLTQSLARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADAL 62 Query: 84 EISFDWIYDGEV 95 +S + D E Sbjct: 63 GVSITTLLDYEQ 74 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 22/62 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK R ++G + G+ + EQ RT P + K+ + + Sbjct: 13 RNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 72 Query: 176 DE 177 ++ Sbjct: 73 EQ 74 >gi|238854543|ref|ZP_04644880.1| helix-turn-helix domain protein [Lactobacillus jensenii 269-3] gi|282932361|ref|ZP_06337794.1| DNA-binding protein [Lactobacillus jensenii 208-1] gi|238832836|gb|EEQ25136.1| helix-turn-helix domain protein [Lactobacillus jensenii 269-3] gi|281303518|gb|EFA95687.1| DNA-binding protein [Lactobacillus jensenii 208-1] Length = 213 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 52/148 (35%), Gaps = 4/148 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI---RYALYLRNEYEI 85 + + + ++ K T KE+A + +N + S+ + L + Sbjct: 16 RERIKENLNELLKKRGMTPKELAEKTGIAYTTINNYRRVYAQPSLPSKKNLLAMAKALNC 75 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 D I D + + + + + L+++ +G++ EF + LG+ L Sbjct: 76 EPDEI-DPSYLQFVVTNDKLDNKENLQIFSSNLEALISREGLTYKEFCENLGISYRALWG 134 Query: 146 YEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + G P + + + + + + Sbjct: 135 WATGEIKPSEESLEILSKHFRIPISDLL 162 Score = 41.1 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 21/69 (30%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + + ++ + T KE A+ + G S L + Sbjct: 95 DNKENLQIFSSNLEALISREGLTYKEFCENLGISYRALWGWATGEIKPSEESLEILSKHF 154 Query: 84 EISFDWIYD 92 I + + Sbjct: 155 RIPISDLLN 163 >gi|170742019|ref|YP_001770674.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196293|gb|ACA18240.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 201 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 24/72 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +RK T +++A ++ E I + + W + Sbjct: 22 LGEQIRALRKIKGLTLQQIAGEIGVSIGYLSQIERNRSKLPIGVLKRIATILGVQLSWFF 81 Query: 92 DGEVIDRRYEDV 103 + + E Sbjct: 82 QPQTLGPPEEQD 93 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++++RK KG++ + +G+ LS E+ R+ I ++I + L W + Sbjct: 24 EQIRALRKIKGLTLQQIAGEIGVSIGYLSQIERNRSKLPIGVLKRIATILGVQLSWFFQP 83 Query: 176 DEVIVPKS 183 + P+ Sbjct: 84 QTLGPPEE 91 >gi|163745028|ref|ZP_02152388.1| DNA-binding protein [Oceanibulbus indolifex HEL-45] gi|161381846|gb|EDQ06255.1| DNA-binding protein [Oceanibulbus indolifex HEL-45] Length = 227 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 2/104 (1%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 +T + + R+K+ R+ + +A + S V+ E G S +I L Sbjct: 39 AMTENNDKILTQLPARLKEARQGQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNL 98 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTN--KKRLDPYAIGARLKSI 121 ++ F + DG + + E + + ++ G R++ + Sbjct: 99 TRALQVDFAGLLDGAPTEAQIEVLRSAAVPTINNLGSGCRIRIL 142 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D N K L ARLK R+ +G+S KL G+ S +S E+G + P Sbjct: 34 PRDISAMTENNDKILTQL--PARLKEARQGQGLSLDAVAKLSGVSRSMVSQIERGESSPT 91 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 I + + + + G + R+ Sbjct: 92 IATLWNLTRALQVDFAGLLDGAPTEAQIEVLRS 124 >gi|306833638|ref|ZP_07466765.1| Cro/CI family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424408|gb|EFM27547.1| Cro/CI family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 74 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R+ N+ TQK +A + SA E G S + L N Y +S D++ Sbjct: 3 RRLRDLREDNDFTQKYVAEKLSFTHSAYAKIERGERILSADVIIKLSNLYNVSTDYLLGQ 62 Query: 94 EVIDRRYEDVTN 105 R + T Sbjct: 63 TDFPHRIKKNTK 74 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+D +Q + L +S + E+G I K+ + D++ Sbjct: 1 MYRRLRDLREDNDFTQKYVAEKLSFTHSAYAKIERGERILSADVIIKLSNLYNVSTDYLL 60 Query: 174 FGDEVIVPKSIKR 186 + P IK+ Sbjct: 61 G--QTDFPHRIKK 71 >gi|241661721|ref|YP_002980081.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240863748|gb|ACS61409.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 194 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 31/80 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + R++++R A + +A + SA++L E G S + L + ++ Sbjct: 2 DIHQRIAQRLRELRDAQGLSLDALAERSQVSRSAISLIERGQSSPTAAVLDRLSSALGVT 61 Query: 87 FDWIYDGEVIDRRYEDVTNK 106 +++ ++ Sbjct: 62 LASLFEDSAAPAAEPSPVSR 81 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 2/79 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RL+ +R +G+S + + S +S E+G++ P ++ L Sbjct: 4 HQRIAQRLRELRDAQGLSLDALAERSQVSRSAISLIERGQSSPTAAVLDRLSSALGVTLA 63 Query: 171 WIYFGD--EVIVPKSIKRA 187 ++ P + RA Sbjct: 64 SLFEDSAAPAAEPSPVSRA 82 >gi|163761507|ref|ZP_02168579.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Hoeflea phototrophica DFL-43] gi|162281221|gb|EDQ31520.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Hoeflea phototrophica DFL-43] Length = 480 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 21/59 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ IR TQ A S +N EN S L L + + + Sbjct: 8 IGGKIRAIRGEQGLTQAGFATKLGISTSYLNQIENNQRHVSASVLLALAEAFSVDITTL 66 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++IR ++G++Q F LG+ S L+ E + + + + + Sbjct: 12 IRAIRGEQGLTQAGFATKLGISTSYLNQIENNQRHVSASVLLALAEAFSVDITTL 66 >gi|158423127|ref|YP_001524419.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158330016|dbj|BAF87501.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 249 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G +++ IR+ + T ++A A ++ ENG S S+ + + Sbjct: 62 LEQALGIQVRSIRRQLDLTVSDLANAAGISVGMLSKIENGQISPSLSTLQSVARALNVPI 121 Query: 88 DWIY 91 ++ Sbjct: 122 TALF 125 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G +++SIR+ ++ + G+ LS E G+ P + + + + + + Sbjct: 65 ALGIQVRSIRRQLDLTVSDLANAAGISVGMLSKIENGQISPSLSTLQSVARALNVPITAL 124 Query: 173 Y-FGDEVIVPKSIKRAKGNQSSKKSKK 198 + +E +K +G ++ K Sbjct: 125 FSTFEERHDCSYVKAGQGVVIERRGTK 151 >gi|304440739|ref|ZP_07400622.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370772|gb|EFM24395.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 135 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE-NGMCSTSIRYALYLRNEYEISFDW 89 + G +IK +R+ TQKE+A ++ +E G +++ L ++++ ++ Sbjct: 2 NFGNKIKSLREEKGLTQKELADMLGTSLKTISNYEVKGTRPRTMKNFEKLAEIFDVNVNY 61 Query: 90 IYDGEVI 96 + E Sbjct: 62 LLTDEEY 68 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP-EIKPARKIKQVTKKHLD 170 G ++KS+R++KG++Q E +LG T+SNYE T P +K K+ ++ +++ Sbjct: 1 MNFGNKIKSLREEKGLTQKELADMLGTSLKTISNYEVKGTRPRTMKNFEKLAEIFDVNVN 60 Query: 171 WIYFGDE 177 ++ +E Sbjct: 61 YLLTDEE 67 >gi|260597676|ref|YP_003210247.1| DNA-binding transcriptional repressor PuuR [Cronobacter turicensis z3032] gi|260216853|emb|CBA30375.1| HTH-type transcriptional regulator puuR [Cronobacter turicensis z3032] Length = 185 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR+ +Q+ +A + SA++ E S +I L Y +S + Sbjct: 9 GKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDEL 85 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 66 FFAEPEKPDEPQV 78 >gi|226325033|ref|ZP_03800551.1| hypothetical protein COPCOM_02825 [Coprococcus comes ATCC 27758] gi|225206381|gb|EEG88735.1| hypothetical protein COPCOM_02825 [Coprococcus comes ATCC 27758] Length = 112 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 33/77 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++ + ++RK TQK++A + V+ +E G ++ + + + I+ Sbjct: 1 MKNLDNFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADILGITVT 60 Query: 89 WIYDGEVIDRRYEDVTN 105 + GE + ++ Sbjct: 61 ELLQGEKLKENKTLNSD 77 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 35/69 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L +RK+K M+Q + L + + T+S +E+G ++P + I + + + G Sbjct: 6 NFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADILGITVTELLQG 65 Query: 176 DEVIVPKSI 184 +++ K++ Sbjct: 66 EKLKENKTL 74 >gi|153005820|ref|YP_001380145.1| hypothetical protein Anae109_2962 [Anaeromyxobacter sp. Fw109-5] gi|152029393|gb|ABS27161.1| protein of unknown function DUF955 [Anaeromyxobacter sp. Fw109-5] Length = 476 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G +++ +R+ TQ +A S +NL E+ S S + L + ++ Sbjct: 7 LGAKVRSLRRQRGLTQAHLAERLGISASYLNLIEHNRRSLSAPLLIKLADILDLDL 62 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +GA+++S+R+ +G++Q + LG+ S L+ E R K+ + L Sbjct: 3 DAAHLGAKVRSLRRQRGLTQAHLAERLGISASYLNLIEHNRRSLSAPLLIKLADILDLDL 62 >gi|85709950|ref|ZP_01041015.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] gi|85688660|gb|EAQ28664.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] Length = 63 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q+++A +VN E G S+ A + + + + I+ Sbjct: 3 NRLKVLRAERDWSQQDLADRLGVSRQSVNAIEKGRYDPSLPLAFNISEVFGLPIEEIFSR 62 Query: 94 E 94 + Sbjct: 63 D 63 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ + LG+ +++ E+GR P + A I +V ++ I+ Sbjct: 1 MNNRLKVLRAERDWSQQDLADRLGVSRQSVNAIEKGRYDPSLPLAFNISEVFGLPIEEIF 60 Query: 174 FGD 176 D Sbjct: 61 SRD 63 >gi|75758833|ref|ZP_00738946.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493674|gb|EAO56777.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 130 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +R KE+ S ++ +EN S + + +S D + Sbjct: 6 FGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFETLQKISIYFNVSTDRLL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 + ++ D ++K + Sbjct: 66 NHKIGDSEALTTEDRKII 83 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G ++ +R KG++ E G +LG+ +ST+SN+E R P + +KI Sbjct: 1 MIQNYFGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFETLQKISIYFNVS 60 Query: 169 LDWIYF---GDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 D + GD + ++ + ++ + K+ Sbjct: 61 TDRLLNHKIGDSEALTTEDRKIIVERLAQDLYESYKN 97 >gi|317490340|ref|ZP_07948825.1| hypothetical protein HMPREF1023_02525 [Eggerthella sp. 1_3_56FAA] gi|325833363|ref|ZP_08165812.1| putative ATP synthase F0, A subunit [Eggerthella sp. HGA1] gi|316910554|gb|EFV32178.1| hypothetical protein HMPREF1023_02525 [Eggerthella sp. 1_3_56FAA] gi|325485287|gb|EGC87756.1| putative ATP synthase F0, A subunit [Eggerthella sp. HGA1] Length = 394 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 3/87 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+ TQ+ +A + V+ ++ G + L L + + S D + Sbjct: 3 FADNLVYLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDDLM 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + +R D + L Sbjct: 63 RG---SVHVVKENDTERYDEHMNRFDL 86 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 34/83 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L +R+ G++Q + L + T+S ++ G PE+ ++ + LD Sbjct: 1 MSFADNLVYLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + G +V ++ ++ Sbjct: 61 LMRGSVHVVKENDTERYDEHMNR 83 >gi|323528510|ref|YP_004230662.1| Cupin 2 barrel domain-containing protein [Burkholderia sp. CCGE1001] gi|323385512|gb|ADX57602.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1001] Length = 190 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 38/102 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG++I+ +R+ +T + A A + ++ E G+ S SI + + ++ + Sbjct: 13 EVGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYF 72 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 D +R K + G Q+E Sbjct: 73 VDTPSEERSVSRGDQLKFFGFADSANLFARLTNVTGGRQLEA 114 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 2/77 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G++++++R+ + + G+ LS E+G P I I + + Sbjct: 12 LEVGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 71 Query: 172 IYFGDEVIVPKSIKRAK 188 D +S+ R Sbjct: 72 FV--DTPSEERSVSRGD 86 >gi|258513952|ref|YP_003190174.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257777657|gb|ACV61551.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 71 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R K M+Q + +G+ T++ E+G P I I ++ K LD +++ D+ Sbjct: 7 IKAARAAKDMTQKDLADAVGVARQTMNAIEKGDYNPSINLCISICKILGKTLDQLFWEDD 66 Query: 178 VIVPK 182 K Sbjct: 67 EYENK 71 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK R A + TQK++A +N E G + SI + + + D ++ Sbjct: 6 RIKAARAAKDMTQKDLADAVGVARQTMNAIEKGDYNPSINLCISICKILGKTLDQLF 62 >gi|257081119|ref|ZP_05575480.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256989149|gb|EEU76451.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] Length = 250 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMVRLSEEQLSYHDSLKI 133 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYE 147 +I Y+ + K + +GAR++ RK K + +G+ + ST+SN+E Sbjct: 2 YILRTPYPHIYYKRSVSMK-ITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWE 60 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 G +P + +KI + +DW+ +GD Sbjct: 61 LGLNLPNKRYLKKIAKACDTTVDWLLYGD 89 >gi|257792471|ref|YP_003183077.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476368|gb|ACV56688.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 395 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 3/87 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+ TQ+ +A + V+ ++ G + L L + + S D + Sbjct: 3 FADNLVYLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDDLM 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + +R D + L Sbjct: 63 RG---SVHVVKENDTERYDEHMNRFDL 86 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 34/83 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L +R+ G++Q + L + T+S ++ G PE+ ++ + LD Sbjct: 1 MSFADNLVYLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + G +V ++ ++ Sbjct: 61 LMRGSVHVVKENDTERYDEHMNR 83 >gi|226357938|ref|YP_002787678.1| transcriptional regulator, XRE Family [Deinococcus deserti VCD115] gi|226320181|gb|ACO48174.1| putative transcriptional regulator, XRE Family [Deinococcus deserti VCD115] Length = 129 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R+ K++A A ++ E G + S+ L + Y I+ + +G Sbjct: 5 ERLRELRQERGLRLKDIAGAAQISVPYLSDLERGRTNPSLETLQSLASTYGITVHDLLEG 64 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R+++G+ + + LS+ E+GRT P ++ + + + + G Sbjct: 5 ERLRELRQERGLRLKDIAGAAQISVPYLSDLERGRTNPSLETLQSLASTYGITVHDLLEG 64 Query: 176 DE 177 E Sbjct: 65 VE 66 >gi|225405316|ref|ZP_03760505.1| hypothetical protein CLOSTASPAR_04536 [Clostridium asparagiforme DSM 15981] gi|225043159|gb|EEG53405.1| hypothetical protein CLOSTASPAR_04536 [Clostridium asparagiforme DSM 15981] Length = 130 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 1/89 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G I + RK TQ E+A + AV+ +E + I L IS D Sbjct: 3 KTLGMIIAEHRKEKGMTQLELAEKMRVTDKAVSKWERDLSCPDIHSLPNLAAILGISIDD 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + K+ +D L Sbjct: 63 LMQIK-REVPVSSKNPKEVMDILFKAVAL 90 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RK+KGM+Q+E + + + + +S +E+ + P+I + + +D + Sbjct: 7 MIIAEHRKEKGMTQLELAEKMRVTDKAVSKWERDLSCPDIHSLPNLAAILGISIDDLM 64 >gi|170692962|ref|ZP_02884123.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170141960|gb|EDT10127.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 190 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 38/102 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG++I+ +R+ +T + A A + ++ E G+ S SI + + ++ + Sbjct: 13 EVGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYF 72 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 D +R K + G Q+E Sbjct: 73 VDTPSEERSVSRGDQLKFFGFADSANLFARLTNVTGGRQLEA 114 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 2/83 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G++++++R+ + + G+ LS E+G P I I Sbjct: 6 HKSNSALEVGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHAL 65 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 + + D +S+ R Sbjct: 66 GVTVQYFV--DTPSEERSVSRGD 86 >gi|209546022|ref|YP_002277912.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538879|gb|ACI58812.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 27/85 (31%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P+ +G ++ RK T ++A ++ ENG S S+ Sbjct: 23 QDPHAVREPKENNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLT 82 Query: 75 YALYLRNEYEISFDWIYDGEVIDRR 99 L + + R Sbjct: 83 TLQSLSRALGVPMTAFFRRFEEPRN 107 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + L+ AIG +++ RK G++ + G+ LS E G P Sbjct: 22 SQDPHAVREPKENNLE-MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPS 80 Query: 155 IKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + + + +E +K +G + ++ + N Sbjct: 81 LTTLQSLSRALGVPMTAFFRRFEEPRNAVFVKAGQGIELERRGTRAGHQYN 131 >gi|78044139|ref|YP_360516.1| prophage LambdaCh01, PBSX family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996254|gb|ABB15153.1| prophage LambdaCh01, transcriptional regulator, PBSX family [Carboxydothermus hydrogenoformans Z-2901] Length = 76 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K +RKAN TQ EMA ES ENG S++ AL + +++ + ++ Sbjct: 2 NKLKQLRKANGLTQMEMAKKLGISESYYCQIENGTRRMSLKTALDIAAILKVTPNDLF 59 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +LK +RK G++Q+E K LG+ S E G +K A I + K + ++ Sbjct: 1 MNKLKQLRKANGLTQMEMAKKLGISESYYCQIENGTRRMSLKTALDIAAILKVTPNDLF 59 >gi|294992441|gb|ADF57361.1| hypothetical repressor protein [Roseburia inulinivorans DSM 16841] Length = 68 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+++R+++N +Q+ + N + AV+ E C+ S + + + ++ D+I Sbjct: 4 NRIRELRRSHNMSQEALGTIINTTQQAVSKMEKDTCAISTDLLISMARYFNVTTDYIL 61 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R+ MSQ G ++ +S E+ + + D+I Sbjct: 1 MTENRIRELRRSHNMSQEALGTIINTTQQAVSKMEKDTCAISTDLLISMARYFNVTTDYI 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|291616463|ref|YP_003519205.1| RstR1 [Pantoea ananatis LMG 20103] gi|291151493|gb|ADD76077.1| RstR1 [Pantoea ananatis LMG 20103] Length = 122 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 R +W TR +RK + TQ +MA + V +E+ S+ ++ + + Sbjct: 11 RMFWMSFSTRFLSLRKEHGLTQPQMADKVGIHLTQVRRYESREAQPSLDILKHIAVTFNV 70 Query: 86 SFDWIYD--GEVIDRRYEDVTNKKRLD 110 S DW+ GE + K++D Sbjct: 71 SADWLIFEGGEREPQDELKFEAIKQMD 97 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 2/102 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 D + +R+ + R S+RK+ G++Q + +G+ + + YE P + + Sbjct: 4 NDTIDYQRMFWMSFSTRFLSLRKEHGLTQPQMADKVGIHLTQVRRYESREAQPSLDILKH 63 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 I DW+ F E + K + +++ KS Sbjct: 64 IAVTFNVSADWLIF--EGGEREPQDELKFEAIKQMDEEELKS 103 >gi|256423763|ref|YP_003124416.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038671|gb|ACU62215.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 113 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ ++RK +Q E+A + + +E SI A + E+S D++ Sbjct: 6 FGKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIATALEVSLDYLV 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G RL +RKDK +SQ E K +G+ + + YE+ P I+ A I + Sbjct: 1 MKQITFGKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIATALEVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 LD++ ++++ ++I + K S +DK + Sbjct: 61 LDYLVGNTDLLLDQTILD-RIMDIQKLSDQDKADA 94 >gi|160933447|ref|ZP_02080835.1| hypothetical protein CLOLEP_02293 [Clostridium leptum DSM 753] gi|156867324|gb|EDO60696.1| hypothetical protein CLOLEP_02293 [Clostridium leptum DSM 753] Length = 119 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 32/68 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G ++ +R+ +Q+E+ + S ++ +EN + ++ + Y +S D++ Sbjct: 3 DFGNHLRMLRERYGISQEELGRRVGRAGSVISNYENNIKIPTLDVLTTMARIYNVSLDYL 62 Query: 91 YDGEVIDR 98 + D+ Sbjct: 63 VGFDKKDQ 70 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + G L+ +R+ G+SQ E G+ +G S +SNYE IP + + ++ LD Sbjct: 1 MFDFGNHLRMLRERYGISQEELGRRVGRAGSVISNYENNIKIPTLDVLTTMARIYNVSLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQS-----SKKSKKDKKSSN 204 ++ D+ G + K+ K+ K N Sbjct: 61 YLVGFDKKDQVVLEGMTDGQRELIHLLVKELKESTKPKN 99 >gi|49481669|ref|YP_039048.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140498|ref|YP_086329.1| DNA-binding protein [Bacillus cereus E33L] gi|196040491|ref|ZP_03107791.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047511|ref|ZP_03114721.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225867013|ref|YP_002752391.1| DNA-binding protein [Bacillus cereus 03BB102] gi|301056519|ref|YP_003794730.1| DNA-binding helix-turn helix protein [Bacillus anthracis CI] gi|49333225|gb|AAT63871.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973967|gb|AAU15517.1| DNA-binding protein [Bacillus cereus E33L] gi|196021625|gb|EDX60322.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196028623|gb|EDX67230.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|225787723|gb|ACO27940.1| DNA-binding protein [Bacillus cereus 03BB102] gi|300378688|gb|ADK07592.1| DNA-binding helix-turn helix protein [Bacillus cereus biovar anthracis str. CI] Length = 73 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R++++R + +Q ++ ++L E G + SI +L + + + + I+ Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFT 63 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +R +SQ + GK +G T+S E+G P I + KI Q+ ++ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEE 60 Query: 172 IYF 174 I+ Sbjct: 61 IFT 63 >gi|315149635|gb|EFT93651.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315171777|gb|EFU15794.1| helix-turn-helix protein [Enterococcus faecalis TX1342] Length = 232 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMVRLSEEQLSYHDSLKI 115 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD 176 +DW+ +GD Sbjct: 61 DTTVDWLLYGD 71 >gi|295104565|emb|CBL02109.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 106 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RKA+ TQ++ AI N + + E G C+ SI + + + + D++ Sbjct: 9 GKRIQKARKAHGLTQEQFAIKLNISDRHLGRIERGECAASIDLLVEVAVSLKTTLDFLIC 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGAR 117 G R +++ I Sbjct: 69 GVTETPRERELSALIEKQHQNIQKF 93 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 D +A G R++ RK G++Q +F L + + L E+G I ++ K Sbjct: 1 MYFDAHATGKRIQKARKAHGLTQEQFAIKLNISDRHLGRIERGECAASIDLLVEVAVSLK 60 Query: 167 KHLDWIYFG 175 LD++ G Sbjct: 61 TTLDFLICG 69 >gi|295132594|ref|YP_003583270.1| helix-turn-helix domain-containing protein [Zunongwangia profunda SM-A87] gi|294980609|gb|ADF51074.1| helix-turn-helix domain-containing protein [Zunongwangia profunda SM-A87] Length = 73 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + +QY++ +G RIK +R+ QK A + + + ENG + + + + Sbjct: 1 MNTKEQQYFEKLGARIKQLREEKGLDQKTFAFDCEIGRTQLYMIENGKTNPRLLTLIKIA 60 Query: 81 NEYEISFDWIYD 92 E+ + D Sbjct: 61 KGLEVPLKKLID 72 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + K++ +GAR+K +R++KG+ Q F + + L E G+T P + KI Sbjct: 1 MNTKEQQYFEKLGARIKQLREEKGLDQKTFAFDCEIGRTQLYMIENGKTNPRLLTLIKIA 60 Query: 163 QVTKKHLDWIY 173 + + L + Sbjct: 61 KGLEVPLKKLI 71 >gi|253755143|ref|YP_003028283.1| DNA-binding protein [Streptococcus suis BM407] gi|251817607|emb|CAZ55354.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 76 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+D+R+ ++ TQK +A + + E G + + + L Y +S D++ Sbjct: 3 QRIRDLREDHDLTQKFVANLLSFSHTNYAKIERGEIALTADVLVQLSKLYNVSTDYLL 60 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D ++Q LL ++ + E+G ++ ++ D++ Sbjct: 1 MYQRIRDLREDHDLTQKFVANLLSFSHTNYAKIERGEIALTADVLVQLSKLYNVSTDYLL 60 >gi|225419983|ref|ZP_03762286.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme DSM 15981] gi|225041375|gb|EEG51621.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme DSM 15981] Length = 151 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNE 82 + +QY ++G RIK +R + +Q E+A + S +N E G+ + Sbjct: 8 QRKQYLIEIGNRIKQLRTEKDMSQDELAKRSGYGSRSTINKIELGINDVPQSKIKAIAEA 67 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLD 110 +S + + D + + +K ++ Sbjct: 68 LGVSVGTLLCWDEFDESHNTIKIQKEIN 95 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKI 161 ++++ IG R+K +R +K MSQ E K G ST++ E G + I Sbjct: 5 NEDQRKQYLIEIGNRIKQLRTEKDMSQDELAKRSGYGSRSTINKIELGINDVPQSKIKAI 64 Query: 162 KQVTKKHLDWIYFGDE 177 + + + DE Sbjct: 65 AEALGVSVGTLLCWDE 80 >gi|167772763|ref|ZP_02444816.1| hypothetical protein ANACOL_04145 [Anaerotruncus colihominis DSM 17241] gi|167665241|gb|EDS09371.1| hypothetical protein ANACOL_04145 [Anaerotruncus colihominis DSM 17241] Length = 149 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R N +Q ++A + AV+ +E G + L +++S + + Sbjct: 7 LLKLRTTNGLSQDQLAEKVHVTRQAVSRWETGETVPNTETLKLLSKLFDVSINTLL 62 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L +R G+SQ + + + + +S +E G T+P + + + ++ ++ Sbjct: 1 MDTKEILLKLRTTNGLSQDQLAEKVHVTRQAVSRWETGETVPNTETLKLLSKLFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|15900996|ref|NP_345600.1| transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|14972607|gb|AAK75240.1| transcriptional regulator [Streptococcus pneumoniae TIGR4] Length = 282 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 7/134 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG RI++IR ++ + ++ N + VN +E G + L + + ++S + Sbjct: 5 NKLVGERIQNIRLSHGDSMEKFGEKFNTSKGTVNNWEKGRNLPNKENLLKIASIGKMSVE 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + G+ + K +D +K+ + + K L + +T+S + Sbjct: 65 ELLYGDYNTYLHL-----KIMDL--APECIKNYDEYNSLHDDITNKALQIAQNTISKIDY 117 Query: 149 GRTIPEIKPARKIK 162 + IK + Sbjct: 118 QISDETIKKFIDLA 131 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +++ +G R+++IR G S +FG+ T++N+E+GR +P + KI + K Sbjct: 1 MKINNKLVGERIQNIRLSHGDSMEKFGEKFNTSKGTVNNWEKGRNLPNKENLLKIASIGK 60 Query: 167 KHLDWIYFGD 176 ++ + +GD Sbjct: 61 MSVEELLYGD 70 >gi|69245031|ref|ZP_00603189.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO] gi|257879271|ref|ZP_05658924.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881911|ref|ZP_05661564.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257883903|ref|ZP_05663556.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257890099|ref|ZP_05669752.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257892889|ref|ZP_05672542.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|258615672|ref|ZP_05713442.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO] gi|260558717|ref|ZP_05830906.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium C68] gi|261208793|ref|ZP_05923230.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium TC 6] gi|289566416|ref|ZP_06446843.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium D344SRF] gi|293553978|ref|ZP_06674581.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1039] gi|293563215|ref|ZP_06677668.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|293567490|ref|ZP_06678836.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|293573068|ref|ZP_06684008.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E980] gi|294614455|ref|ZP_06694371.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|294617942|ref|ZP_06697547.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|294622380|ref|ZP_06701409.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|314937335|ref|ZP_07844675.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314940969|ref|ZP_07847872.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314949058|ref|ZP_07852420.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|314953462|ref|ZP_07856378.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994151|ref|ZP_07859458.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995961|ref|ZP_07861041.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|68196032|gb|EAN10464.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO] gi|257813499|gb|EEV42257.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817569|gb|EEV44897.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257819741|gb|EEV46889.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257826459|gb|EEV53085.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257829268|gb|EEV55875.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|260075176|gb|EEW63489.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium C68] gi|260077295|gb|EEW65015.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium TC 6] gi|289161791|gb|EFD09664.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium D344SRF] gi|291589799|gb|EFF21601.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|291592763|gb|EFF24356.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|291595751|gb|EFF27039.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|291598140|gb|EFF29243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|291601861|gb|EFF32110.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1039] gi|291604810|gb|EFF34291.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|291606861|gb|EFF36243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E980] gi|313589837|gb|EFR68682.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591418|gb|EFR70263.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594495|gb|EFR73340.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313600201|gb|EFR79044.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313643286|gb|EFS07866.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|313644535|gb|EFS09115.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 180 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 32/72 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEF 61 Query: 91 YDGEVIDRRYED 102 + E + + Sbjct: 62 FHQEAANLQVVY 73 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|312794244|ref|YP_004027167.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181384|gb|ADQ41554.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 66 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK++R+ +Q++++ AN +S + ENG+ S +++ L E+ Sbjct: 2 LGEKIKELRQKKGLSQQKLSKLANVPQSTIWYIENGISSPTLKTLEKLARALEVPVHEFV 61 Query: 92 DGEVI 96 D + Sbjct: 62 DSQNK 66 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++K +R+ KG+SQ + KL +P ST+ E G + P +K K+ + + + Sbjct: 1 MLGEKIKELRQKKGLSQQKLSKLANVPQSTIWYIENGISSPTLKTLEKLARALEVPVHEF 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|296502946|ref|YP_003664646.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296323998|gb|ADH06926.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 186 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M K S Sbjct: 66 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLN---KRANTTES 122 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 S+ ++ I K +V L+ ++ GD V +P ++K N+S + + Sbjct: 123 HYSHEDKEE----IAVIMK-GEVY-VELEGKEYFLEEGDVVRIPPNVKHRFLNKSDESN 175 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ D + Sbjct: 13 YRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFIND-IDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENND 90 >gi|228936772|ref|ZP_04099562.1| hypothetical protein bthur0009_52060 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229199177|ref|ZP_04325858.1| hypothetical protein bcere0001_46890 [Bacillus cereus m1293] gi|228584283|gb|EEK42420.1| hypothetical protein bcere0001_46890 [Bacillus cereus m1293] gi|228822891|gb|EEM68733.1| hypothetical protein bthur0009_52060 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 79 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFN 61 Query: 85 ISFDWIYD 92 + + I+ Sbjct: 62 VPVEEIFT 69 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI Q+ Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIF 60 Query: 166 KKHLDWIYF 174 ++ I+ Sbjct: 61 NVPVEEIFT 69 >gi|227520119|ref|ZP_03950168.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227072463|gb|EEI10426.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] Length = 232 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMIRLSEEQLSYHDSLKI 115 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD 176 +DW+ +GD Sbjct: 61 DTTVDWLLYGD 71 >gi|226223363|ref|YP_002757470.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823987|ref|ZP_05228988.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|225875825|emb|CAS04528.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293593215|gb|EFG00976.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] Length = 169 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKS 183 G+ V+V K Sbjct: 61 L-GETVMVSKV 70 >gi|149921945|ref|ZP_01910388.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817207|gb|EDM76685.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 108 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 27/65 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +R+ TQ +A A ++ E+ S S+ + + + ++ + + Sbjct: 6 FGARVRLLREGRGLTQARLARMAGVASDTISRVESARFSPSLDTMIKIADGLKLPLEALL 65 Query: 92 DGEVI 96 + Sbjct: 66 GEKFD 70 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ GAR++ +R+ +G++Q ++ G+ + T+S E R P + KI K Sbjct: 1 MNGELFGARVRLLREGRGLTQARLARMAGVASDTISRVESARFSPSLDTMIKIADGLKLP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKG 189 L+ + + +G Sbjct: 61 LEALLGEKFDQADELAALIRG 81 >gi|315038706|ref|YP_004032274.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] gi|312276839|gb|ADQ59479.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] Length = 135 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI++IRK +Q ++A S ++ FENG+ + +S ++I G Sbjct: 2 NRIREIRKKQGISQSKLAQLTGIPTSTLSEFENGLHDPGEDRLRKIAQALNVSLNYIQGG 61 Query: 94 EVIDRRYEDVTNK 106 + R + Sbjct: 62 KRPIRMDGKSCDY 74 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ IRK +G+SQ + +L G+P STLS +E G P RKI Q L++I Sbjct: 1 MNRIREIRKKQGISQSKLAQLTGIPTSTLSEFENGLHDPGEDRLRKIAQALNVSLNYIQG 60 Query: 175 GDEVI 179 G I Sbjct: 61 GKRPI 65 >gi|311032008|ref|ZP_07710098.1| transcriptional regulator, XRE family protein [Bacillus sp. m3-13] Length = 134 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 33/85 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK +R N +Q+++A N++ ++ +E I + L +++S D++ Sbjct: 8 LARNIKSLRNQKNWSQQDLADRLNRVHGTISKWETEKEVPPIETLIELSKLFQVSIDYLV 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 Y N+ A Sbjct: 68 GNHYEQEHYVKEFNQLYQIKQADEE 92 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + + +KS+R K SQ + L + T+S +E + +P I+ ++ ++ + Sbjct: 1 MMNNTSFLARNIKSLRNQKNWSQQDLADRLNRVHGTISKWETEKEVPPIETLIELSKLFQ 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 +D++ G+ +K K++ ++ Sbjct: 61 VSIDYLV-GNHYEQEHYVKEFNQLYQIKQADEE 92 >gi|253578635|ref|ZP_04855906.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849578|gb|EES77537.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 220 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY- 78 ++ + ++ K +G+RIK R N TQ +A S + +ENG + + L Sbjct: 27 AVSMKDKELRKLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEG 86 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 L +S +W+ GE + + ++ A+G L+ + Sbjct: 87 LSEALHVSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 128 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 2/115 (1%) Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 L + I+ + E V+ K + IG+R+K R + ++Q + Sbjct: 1 MLKINFILHIAISEKQCYNSYIPKKEAVSMKDKELRKLIGSRIKQRRLELNLTQPYVAEK 60 Query: 136 LGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDEVIVPKSIKRAKG 189 +G+ ST+ YE G K + + + ++W+ G+ I + Sbjct: 61 MGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-KGETDEYETDITDKRE 114 >gi|229918744|ref|YP_002887390.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229470173|gb|ACQ71945.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 74 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +RKA TQ+++A+ +S + E+G L L + ++ ++++ Sbjct: 8 QRLVSLRKAAQLTQEQLALKIGVTQSMIAHIESGTKDPGKDNKLKLAAFFGVTVEYLFYE 67 Query: 94 EVIDRR 99 D + Sbjct: 68 VYYDVK 73 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + RL S+RK ++Q + +G+ S +++ E G P K+ Sbjct: 1 MSQIVPNQRLVSLRKAAQLTQEQLALKIGVTQSMIAHIESGTKDPGKDNKLKLAAFFGVT 60 Query: 169 LDWIYFG 175 ++++++ Sbjct: 61 VEYLFYE 67 >gi|167569121|ref|ZP_02361995.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 186 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +RK T +A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLFSD 62 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLFSDSH 64 Query: 178 VIVPKSIKRAKGNQS 192 ++ RA S Sbjct: 65 DRELITVTRASERTS 79 >gi|323350695|ref|ZP_08086356.1| hypothetical protein HMPREF9398_0404 [Streptococcus sanguinis VMC66] gi|322123115|gb|EFX94806.1| hypothetical protein HMPREF9398_0404 [Streptococcus sanguinis VMC66] Length = 136 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQVLKGIRQQNQLTQETLAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE + K I+ +K + Sbjct: 61 LIKEDERLEKKVIEDSKAKK 80 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +K IR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQVLKGIRQQNQLTQETLAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDER 67 >gi|320526956|ref|ZP_08028145.1| cupin domain protein [Solobacterium moorei F0204] gi|320132541|gb|EFW25082.1| cupin domain protein [Solobacterium moorei F0204] Length = 180 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK +R N+ T +E+A + ++ E + S SI+ + + Sbjct: 3 DIGHRIKQLRIKNDLTLEELASRTELTKGFLSQLERNLTSPSIQTLADIAEALGVDMSRF 62 Query: 91 YDGEVIDRRYEDVTN 105 + E ++ + Sbjct: 63 FAEEHEEKIVFTPED 77 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+K +R ++ E + LS E+ T P I+ I + + Sbjct: 1 MIDIGHRIKQLRIKNDLTLEELASRTELTKGFLSQLERNLTSPSIQTLADIAEALGVDMS 60 Query: 171 WIYFGD 176 + + Sbjct: 61 RFFAEE 66 >gi|317050695|ref|YP_004111811.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316945779|gb|ADU65255.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 224 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 22/65 (33%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++RK TQ E A V+ E G + + + +W+ G Sbjct: 4 QRLRELRKMLGLTQGEFAFHVGTSPGYVSEAEQGKKVPGGEILRRICEKLNANINWLLTG 63 Query: 94 EVIDR 98 Sbjct: 64 SGDMF 68 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL+ +RK G++Q EF +G +S EQG+ +P + R+I + +++W+ Sbjct: 1 MLNQRLRELRKMLGLTQGEFAFHVGTSPGYVSEAEQGKKVPGGEILRRICEKLNANINWL 60 Query: 173 YFG 175 G Sbjct: 61 LTG 63 >gi|218132726|ref|ZP_03461530.1| hypothetical protein BACPEC_00587 [Bacteroides pectinophilus ATCC 43243] gi|217992452|gb|EEC58455.1| hypothetical protein BACPEC_00587 [Bacteroides pectinophilus ATCC 43243] Length = 123 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 32/74 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI+++R+ TQ +++ + ++ +EN + S+ + + + S D+I Sbjct: 9 LANRIRELRQEKKITQLQLSSQLEVTQETISAYENNVHMPSLAALMKMSKIFNASMDYIM 68 Query: 92 DGEVIDRRYEDVTN 105 + ++ Sbjct: 69 GQSNVRNIPKEEEP 82 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 34/66 (51%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + + + R++ +R++K ++Q++ L + T+S YE +P + K+ ++ Sbjct: 3 FIRRHILANRIRELRQEKKITQLQLSSQLEVTQETISAYENNVHMPSLAALMKMSKIFNA 62 Query: 168 HLDWIY 173 +D+I Sbjct: 63 SMDYIM 68 >gi|254441331|ref|ZP_05054824.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] gi|198251409|gb|EDY75724.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] Length = 131 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 32/107 (29%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + G R+ R TQKE+A S + +E + L +S Sbjct: 13 EETATFGDRLAAARDVAQLTQKELAQRVGIKTSTLRNWEEDLSEPRANRLSILCGILGVS 72 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 W+ E D D A+ L+++R S Sbjct: 73 LRWLLTAEGEGLLAPDEDAPIAPDVSAMLTELRAVRAQMKQSTERLA 119 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--G 175 L + R ++Q E + +G+ STL N+E+ + P + + L W+ G Sbjct: 22 LAAARDVAQLTQKELAQRVGIKTSTLRNWEEDLSEPRANRLSILCGILGVSLRWLLTAEG 81 Query: 176 DEVIVPKS 183 + ++ P Sbjct: 82 EGLLAPDE 89 >gi|195937299|ref|ZP_03082681.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4024] Length = 152 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 35/108 (32%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K G R+K++R A +Q+ A S ++ E G + S+ L N + Sbjct: 3 LRKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEP 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + ++ D L S R + + Sbjct: 63 WRLLVSDSSEDSDPELLVPYAADGSCFHPGLASTRDGSFGVGDKTAQK 110 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 G R+K +R GMSQ F G S +S E+G + + + Sbjct: 7 FGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSV 60 >gi|158321856|ref|YP_001514363.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158142055|gb|ABW20367.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 125 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 33/86 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RKANN T ++ ++ EN S + + + +S DWI Sbjct: 4 IGKRIRAARKANNLTLIDIKNITGLSTGNLSELENDKFLPSANALIQFKKLFNVSIDWIL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 GE + + + Y I Sbjct: 64 TGEEPNYATNPQAFNEMKEAYIISEY 89 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 3/88 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+++ RK ++ I+ + G+ LS E + +P + K++ +DWI G Sbjct: 6 KRIRAARKANNLTLIDIKNITGLSTGNLSELENDKFLPSANALIQFKKLFNVSIDWILTG 65 Query: 176 DEV---IVPKSIKRAKGNQSSKKSKKDK 200 +E P++ K + +D+ Sbjct: 66 EEPNYATNPQAFNEMKEAYIISEYTEDE 93 >gi|50084796|ref|YP_046306.1| putative transcription regulator protein [Acinetobacter sp. ADP1] gi|49530772|emb|CAG68484.1| putative transcription regulator protein [Acinetobacter sp. ADP1] Length = 190 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 34/92 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + RIK +R T E+A ++ + +++ E + + L + Sbjct: 1 MMDINQHLSQRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLEKLAVALD 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 I+ +++ + D + + T + Sbjct: 61 ITLVSLFNIQTSDLKTQPYTRYSEQPVWTDPE 92 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+K +R ++G + E + + +S E+ T P K+ L Sbjct: 5 NQHLSQRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLEKLAVALDITLV 64 Query: 171 WIY 173 ++ Sbjct: 65 SLF 67 >gi|15804867|ref|NP_290908.1| hypothetical protein Z5888 [Escherichia coli O157:H7 EDL933] gi|15834506|ref|NP_313279.1| transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187775901|ref|ZP_02799013.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188024876|ref|ZP_02774577.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|189010535|ref|ZP_02807807.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189402054|ref|ZP_02779862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189402821|ref|ZP_02791571.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189403845|ref|ZP_02785537.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189405572|ref|ZP_02822862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208808264|ref|ZP_03250601.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208813993|ref|ZP_03255322.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208819818|ref|ZP_03260138.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396646|ref|YP_002273817.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217326404|ref|ZP_03442488.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254796292|ref|YP_003081129.1| hypothetical protein ECSP_5374 [Escherichia coli O157:H7 str. TW14359] gi|12519290|gb|AAG59474.1|AE005659_9 hypothetical protein Z5888 [Escherichia coli O157:H7 str. EDL933] gi|13364730|dbj|BAB38675.1| putative transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187770260|gb|EDU34104.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188016183|gb|EDU54305.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|188999764|gb|EDU68750.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189357829|gb|EDU76248.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189364128|gb|EDU82547.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189368948|gb|EDU87364.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189379428|gb|EDU97844.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208728065|gb|EDZ77666.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208735270|gb|EDZ83957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208739941|gb|EDZ87623.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158046|gb|ACI35479.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217322625|gb|EEC31049.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254595692|gb|ACT75053.1| predicted protein [Escherichia coli O157:H7 str. TW14359] gi|320190592|gb|EFW65242.1| putative transcription regulator [Escherichia coli O157:H7 str. EC1212] gi|326345394|gb|EGD69137.1| putative transcription regulator [Escherichia coli O157:H7 str. 1125] gi|326346751|gb|EGD70485.1| putative transcription regulator [Escherichia coli O157:H7 str. 1044] Length = 154 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 35/108 (32%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K G R+K++R A +Q+ A S ++ E G + S+ L N + Sbjct: 5 LRKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEP 64 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + ++ D L S R + + Sbjct: 65 WRLLVSDSSEDSDPELLVPYAADGSCFHPGLASTRDGSFGVGDKTAQK 112 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 G R+K +R GMSQ F G S +S E+G + + + Sbjct: 9 FGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSV 62 >gi|323494354|ref|ZP_08099466.1| DNA-binding protein [Vibrio brasiliensis LMG 20546] gi|323311517|gb|EGA64669.1| DNA-binding protein [Vibrio brasiliensis LMG 20546] Length = 182 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 36/96 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++GTR K +R+ +Q+E+A A ++ EN S S+ L ++ S Sbjct: 4 EIGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSMAEF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + + +++ + + + G Sbjct: 64 FAIDDPQPEQFYTRKEEQPEIGQGEISYRQVGHFHG 99 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 31/83 (37%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K++R+ G+SQ E K G+ N +S E P + K+ + + D+ Sbjct: 10 KALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSMAEFFAIDDP 69 Query: 179 IVPKSIKRAKGNQSSKKSKKDKK 201 + R + + + + Sbjct: 70 QPEQFYTRKEEQPEIGQGEISYR 92 >gi|312864338|ref|ZP_07724571.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100059|gb|EFQ58270.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 291 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ RK +Q+++A + A+ +E G I + ++IS D + Sbjct: 7 LRHYRKELGFSQEKLAEKLHVSRQAITKWETGGGLPDISNLQAIAQLFQISLDDLLAESA 66 Query: 96 IDRRYEDV 103 +D Sbjct: 67 SPIEPKDF 74 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ RK+ G SQ + + L + ++ +E G +P+I + I Q+ + LD + Sbjct: 5 QTLRHYRKELGFSQEKLAEKLHVSRQAITKWETGGGLPDISNLQAIAQLFQISLDDLL 62 >gi|308187276|ref|YP_003931407.1| LexA repressor [Pantoea vagans C9-1] gi|308057786|gb|ADO09958.1| LexA repressor [Pantoea vagans C9-1] Length = 210 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI+ RK+ TQK++A A++ +E L L + Sbjct: 3 NETLGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEETLPRGENLLRLAEALGCTPA 62 Query: 89 WIYDGEVIDRRYED 102 ++ DG+ Sbjct: 63 YLIDGDGPVFSENS 76 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 35/75 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G R++ RK ++Q + + + + + +S +E+ T+P + ++ + Sbjct: 1 MKNETLGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEETLPRGENLLRLAEALGCT 60 Query: 169 LDWIYFGDEVIVPKS 183 ++ GD + ++ Sbjct: 61 PAYLIDGDGPVFSEN 75 >gi|299139477|ref|ZP_07032651.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298598405|gb|EFI54569.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 188 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 30/76 (39%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P+ + V + ++D+R N +Q+++A N + ++ ENG ++ L Sbjct: 65 APKSAEGGLQVASAVRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLAR 124 Query: 82 EYEISFDWIYDGEVID 97 ++ + Sbjct: 125 ALQVDISALLRDAPTR 140 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 27/58 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R + +SQ + + +P + +S E G+ +P + ++ + + + + Sbjct: 79 VRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALQVDISALLRD 136 >gi|225018996|ref|ZP_03708188.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum DSM 5476] gi|224948221|gb|EEG29430.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum DSM 5476] Length = 174 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 40/105 (38%) Query: 13 SLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 + +Y I + ++G + RK +Q+E+A ++ +E Sbjct: 4 ARLKYYYRIKKDKEGKTMNLGNSLFHARKKCGLSQEEVAEKLGVSRQTISKWETDETIPD 63 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 IR + + + Y +S D + D ++ + +D +K + Sbjct: 64 IRQSKKMASIYNVSLDELIDFDLDIKEIQDTIDKTSEETEEKINW 108 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 45/99 (45%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + Y + K +G L RK G+SQ E + LG+ T+S +E TIP+I+ Sbjct: 7 KYYYRIKKDKEGKTMNLGNSLFHARKKCGLSQEEVAEKLGVSRQTISKWETDETIPDIRQ 66 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 ++K+ + LD + D I K ++ +++ Sbjct: 67 SKKMASIYNVSLDELIDFDLDIKEIQDTIDKTSEETEEK 105 >gi|326204709|ref|ZP_08194564.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] gi|325985080|gb|EGD45921.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] Length = 179 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R N TQ+E+A + ++ E + S SI + + + Sbjct: 2 NIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLIDILESLGTNIKDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ V ++ + + G + + Sbjct: 62 FNESVNEKVVFKKDDVFTKEDKDSGYVIHWL 92 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 4/88 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R G++Q E + +S E+ T P I I + ++ Sbjct: 1 MNIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLIDILESLGTNIKD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +E + K + K + K KD Sbjct: 61 FF--NESVNEKVV--FKKDDVFTKEDKD 84 >gi|312134484|ref|YP_004001822.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774535|gb|ADQ04022.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 143 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 39/87 (44%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 +I + R+ ++ G +I+ +R+ +QKE+A A+ +E G I + L Sbjct: 5 MIALDERKRLEEFGLKIRILREEKRISQKELAKRLEISPQALANYEKGKRMPGINILVRL 64 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNK 106 E ++S D++ I + + + Sbjct: 65 SEELDVSIDFLLGLTDIRKPKSRMVKE 91 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 37/66 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +R++K +SQ E K L + L+NYE+G+ +P I ++ + +D++ + Sbjct: 21 IRILREEKRISQKELAKRLEISPQALANYEKGKRMPGINILVRLSEELDVSIDFLLGLTD 80 Query: 178 VIVPKS 183 + PKS Sbjct: 81 IRKPKS 86 >gi|317055345|ref|YP_004103812.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447614|gb|ADU21178.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 68 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 34/67 (50%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++RK + TQ +A+ N +++++ +E G + + + + +S D++ + Sbjct: 2 RLKELRKKKHITQLRLAMDLNMNQNSISRYETGEREADYKTLILFADYFGVSIDYLLERT 61 Query: 95 VIDRRYE 101 ++ Sbjct: 62 DDPTFHK 68 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +RK K ++Q+ L M +++S YE G + K +D++ Sbjct: 1 MRLKELRKKKHITQLRLAMDLNMNQNSISRYETGEREADYKTLILFADYFGVSIDYLL 58 >gi|251788781|ref|YP_003003502.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537402|gb|ACT06023.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 76 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R +Q+ A + ++ E G+ + ++ L ++ Sbjct: 11 LGQRVKMLRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATGLHTDLTTLF 70 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K +R G+SQ F + G+ + +S E+G P ++ + L ++ Sbjct: 13 QRVKMLRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATGLHTDLTTLF 70 >gi|157150101|ref|YP_001451295.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157074895|gb|ABV09578.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 136 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + LD Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D + K I+ +K + Sbjct: 61 LIKEDGRLEKKVIEDSKAKK 80 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS D + Sbjct: 2 KISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDGR 67 >gi|49483261|ref|YP_040485.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425150|ref|ZP_05601576.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427813|ref|ZP_05604211.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430448|ref|ZP_05606830.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433150|ref|ZP_05609508.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436049|ref|ZP_05612096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282903647|ref|ZP_06311535.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|282905416|ref|ZP_06313271.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282908388|ref|ZP_06316219.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910675|ref|ZP_06318478.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282913873|ref|ZP_06321660.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282918797|ref|ZP_06326532.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282923919|ref|ZP_06331595.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|283770160|ref|ZP_06343052.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283957842|ref|ZP_06375293.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|293500910|ref|ZP_06666761.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509866|ref|ZP_06668575.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293526452|ref|ZP_06671137.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|295427586|ref|ZP_06820218.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591460|ref|ZP_06950098.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|49241390|emb|CAG40074.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272126|gb|EEV04258.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274654|gb|EEV06141.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278576|gb|EEV09195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281243|gb|EEV11380.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284331|gb|EEV14451.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282313891|gb|EFB44283.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282316607|gb|EFB46981.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282321941|gb|EFB52265.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282325280|gb|EFB55589.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282328053|gb|EFB58335.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330708|gb|EFB60222.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282595265|gb|EFC00229.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|283460307|gb|EFC07397.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283470309|emb|CAQ49520.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ST398] gi|283789991|gb|EFC28808.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920524|gb|EFD97587.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|291095915|gb|EFE26176.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467316|gb|EFF09833.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|295127944|gb|EFG57578.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576346|gb|EFH95062.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|312438525|gb|ADQ77596.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315193766|gb|EFU24161.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 179 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+ N TQ+E+A + + ++ E+ S S+ L + + Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + D Y G L + Sbjct: 62 FKDSENEKVLYKKEEQVIYDEYDEGYILNWL 92 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R+ K ++Q E + + +S E P ++ I +V Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + E K + Sbjct: 61 FFKDSENEKVLYKKEEQ 77 >gi|25012010|ref|NP_736405.1| hypothetical protein gbs1972 [Streptococcus agalactiae NEM316] gi|76787285|ref|YP_330541.1| transcriptional regulator [Streptococcus agalactiae A909] gi|24413553|emb|CAD47631.1| Unknown [Streptococcus agalactiae NEM316] gi|76562342|gb|ABA44926.1| transcriptional regulator, putative [Streptococcus agalactiae A909] Length = 164 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 43/91 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL+ +R+ ++QIE LG+ T +NYE+ ++ P I ++I + +D+ Sbjct: 1 MTFAKRLRELRQLNNITQIEMANKLGLNRVTYTNYEREKSEPSISTLKEIATIFNVSIDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + ++ K+ ++ + KK +S Sbjct: 61 LIDFEDDTKGKNNRKKLLLSLEAELKKINRS 91 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++++R+ NN TQ EMA +E SI + + +S D++ Sbjct: 3 FAKRLRELRQLNNITQIEMANKLGLNRVTYTNYEREKSEPSISTLKEIATIFNVSIDYLI 62 Query: 92 DGEVIDRRYED 102 D E + + Sbjct: 63 DFEDDTKGKNN 73 >gi|271966422|ref|YP_003340618.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509597|gb|ACZ87875.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 192 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+A + T +A S ++ ENG ++ L L + + D + Sbjct: 12 VGPRLRALRQARSATLAALANETGLTASTLSRLENGKLLPTLEQLLPLARAHGVPLDDLV 71 Query: 92 DGEVIDRRYEDVTNKKR 108 + +R Sbjct: 72 AAPPTGDPRIHLRPVRR 88 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY---- 173 L+++R+ + + G+ STLS E G+ +P ++ + + LD + Sbjct: 16 LRALRQARSATLAALANETGLTASTLSRLENGKLLPTLEQLLPLARAHGVPLDDLVAAPP 75 Query: 174 FGDEVIVPKSIKRA 187 GD I + ++R+ Sbjct: 76 TGDPRIHLRPVRRS 89 >gi|229096902|ref|ZP_04227871.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] gi|228686512|gb|EEL40421.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] Length = 186 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 13/124 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M K S Sbjct: 66 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLN---KKANTTES 122 Query: 142 TLSN 145 S+ Sbjct: 123 HYSH 126 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + Y +G + S RK M+ EF + G+ S +S E+G P + I + Sbjct: 1 MIHYRLGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 L ++ D + I + K + + D Sbjct: 61 LFTLFIND-IDTDSLISKKKDRKKVYRENND 90 >gi|229176551|ref|ZP_04303977.1| Transcriptional regulator [Bacillus cereus MM3] gi|228606907|gb|EEK64303.1| Transcriptional regulator [Bacillus cereus MM3] Length = 115 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 8/105 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG IK +RK+ + TQ++++ + +E + L + + S D + Sbjct: 5 VGQNIKRLRKSFDLTQEQLSDRTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + E + ++ + G Q F K L Sbjct: 65 NFEDRKEDALLGLLFNDIQ--------RAYEELDGRQQGRFAKQL 101 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +RK ++Q + G+ + N+E R P+++ + + D + Sbjct: 7 QNIKRLRKSFDLTQEQLSDRTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALLNF 66 Query: 176 DE 177 ++ Sbjct: 67 ED 68 >gi|170761027|ref|YP_001788505.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408016|gb|ACA56427.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 189 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 38/89 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R T KE++ N ++ E G+ + +I + E ++S + Sbjct: 4 DIGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +++ + +K + +K Sbjct: 64 FQAPKKNKKIVLRSYEKEILQVENNRFIK 92 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K +R +K ++ E + + LS E+G T I KI + L + + Sbjct: 7 KKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFF 64 >gi|189426312|ref|YP_001953489.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189422571|gb|ACD96969.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 188 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R A T + +A + ++ EN S I + +++ Sbjct: 6 NIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIARFFDVKIGHF 65 Query: 91 YDGEVIDRRYEDVTNKKR 108 + E + RYE V +R Sbjct: 66 FAEEEEECRYEIVRADER 83 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + IGA++K +R K ++ + G + +S E P I KI + + Sbjct: 5 FNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIARFFDVKIGH 64 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + +E I RA + Sbjct: 65 FFAEEEEECRYEIVRADERK 84 >gi|15671987|ref|NP_266161.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281490504|ref|YP_003352484.1| transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12722841|gb|AAK04103.1|AE006240_1 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281374322|gb|ADA63855.1| Transcriptional regulator [Lactococcus lactis subsp. lactis KF147] Length = 185 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G ++ R A TQ+E+A A++ +E+ + + L YE Sbjct: 2 LGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALAELYESDL 57 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G L+ R + ++Q E K L +S +E +T P + + ++ + L Sbjct: 1 MLGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALAELYESDLSAF 60 Query: 173 YFGDEVIVPK 182 G E K Sbjct: 61 AQGIEPQKRK 70 >gi|15599272|ref|NP_252766.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107103591|ref|ZP_01367509.1| hypothetical protein PaerPA_01004661 [Pseudomonas aeruginosa PACS2] gi|116052113|ref|YP_789043.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218889643|ref|YP_002438507.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254236965|ref|ZP_04930288.1| hypothetical protein PACG_02989 [Pseudomonas aeruginosa C3719] gi|254242758|ref|ZP_04936080.1| hypothetical protein PA2G_03524 [Pseudomonas aeruginosa 2192] gi|296387366|ref|ZP_06876865.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313109519|ref|ZP_07795473.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9950275|gb|AAG07464.1|AE004823_10 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587334|gb|ABJ13349.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126168896|gb|EAZ54407.1| hypothetical protein PACG_02989 [Pseudomonas aeruginosa C3719] gi|126196136|gb|EAZ60199.1| hypothetical protein PA2G_03524 [Pseudomonas aeruginosa 2192] gi|218769866|emb|CAW25626.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310881975|gb|EFQ40569.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 68 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R +Q E+A VN E G S+ A L + ++ + I+D Sbjct: 3 NRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIFDD 62 Query: 94 EV 95 Sbjct: 63 RE 64 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R ++G SQ E L + T++ E GR P + A K+ +V ++ I+ Sbjct: 1 MRNRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIF 60 Query: 174 FGDE 177 E Sbjct: 61 DDRE 64 >gi|325262169|ref|ZP_08128907.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324033623|gb|EGB94900.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 70 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +R+ ++ TQ+++A ++ +E G I + + + ++IS D + Sbjct: 6 IGHNIRLLRRKHHMTQEQVANKLYMKRQTLSNYEIGKRIPDIYEIIKIADLFDISLDEL 64 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG ++ +R+ M+Q + L M TLSNYE G+ IP+I KI + Sbjct: 1 MSQNTIGHNIRLLRRKHHMTQEQVANKLYMKRQTLSNYEIGKRIPDIYEIIKIADLFDIS 60 Query: 169 LDWIYFGD 176 LD + D Sbjct: 61 LDELAGRD 68 >gi|322411791|gb|EFY02699.1| transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 158 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +R ++ TQ E A ++++ +ENG + S + ++ +S Sbjct: 2 IGDNIKSLRHTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 56 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+R ++Q EF K++G+ ++LS YE G + + +I Q I Sbjct: 1 MIGDNIKSLRHTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLTP 69 >gi|312134839|ref|YP_004002177.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774890|gb|ADQ04377.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 84 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K+IRK N QKE+A +ENG I A+ + +S D I+ + Sbjct: 2 RLKEIRKMKNLKQKEVAEKLQISPQRYCQYENGKRKIPIDIAIKIAQILNMSMDEIFYDK 61 Query: 95 VIDR 98 + Sbjct: 62 SFNT 65 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK IRK K + Q E + L + YE G+ I A KI Q+ +D I++ Sbjct: 1 MRLKEIRKMKNLKQKEVAEKLQISPQRYCQYENGKRKIPIDIAIKIAQILNMSMDEIFYD 60 Query: 176 D 176 Sbjct: 61 K 61 >gi|310827041|ref|YP_003959398.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612] gi|308738775|gb|ADO36435.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612] Length = 183 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 28/78 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK +R+ + +E+A + +S + E G + +I L N + FD + Sbjct: 8 IAKNIKRLREERKLSMEELARLSGVSKSMLAQIERGEGNPTISTLWKLSNGMGVPFDALT 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 + L Sbjct: 68 VRPKNPYEIVKTAELQPL 85 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +R+++ +S E +L G+ S L+ E+G P I K+ D + Sbjct: 10 KNIKRLREERKLSMEELARLSGVSKSMLAQIERGEGNPTISTLWKLSNGMGVPFDAL 66 >gi|262043414|ref|ZP_06016539.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039240|gb|EEW40386.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 207 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 1/99 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R K R TQ E+A A + ++ E+G R L L + S DW+ Sbjct: 3 LAARFKARRIELGMTQTEVANVAGVSQQSIESIESGRTR-KPRNVLELAKALKCSPDWLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 +G+ I E T + Y + R M Sbjct: 62 NGKNIMPLAEVSTRHIPILSYVQAGQCTEARDYTNMEGE 100 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ AR K+ R + GM+Q E + G+ ++ + E GRT + + ++ + K DW Sbjct: 1 MSLAARFKARRIELGMTQTEVANVAGVSQQSIESIESGRTR-KPRNVLELAKALKCSPDW 59 Query: 172 IYFGDEVI 179 + G ++ Sbjct: 60 LLNGKNIM 67 >gi|283795269|ref|ZP_06344422.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291076915|gb|EFE14279.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 97 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G RI +R KTQ++MA N ENG S+ + L ++IS D++ Sbjct: 7 ECGMRISKLRLECGKTQQQMADKLNISLDHYRALENGRRGGSLDLLIELAITFDISLDYL 66 Query: 91 YDG 93 G Sbjct: 67 ILG 69 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 DP G R+ +R + G +Q + L + E GR + ++ Sbjct: 1 MYYDPMECGMRISKLRLECGKTQQQMADKLNISLDHYRALENGRRGGSLDLLIELAITFD 60 Query: 167 KHLDWIYFG 175 LD++ G Sbjct: 61 ISLDYLILG 69 >gi|167041843|gb|ABZ06584.1| putative helix-turn-helix motif protein [uncultured marine microorganism HF4000_097M14] Length = 474 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 3/100 (3%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + Q +G +IK R++ +Q +MA + S +NL E+G S+ L + NE Sbjct: 1 MSQIDLQIGYKIKSKRRSLGISQADMAKKLSISPSYLNLIESGKRKISVDLLLKVANELG 60 Query: 85 ISFDWIYDGEVIDRRYEDVT---NKKRLDPYAIGARLKSI 121 I I + + + D +K I Sbjct: 61 IEISDISKKTDTNLYQNLMDVLGDNLFEDLDITNFDIKEI 100 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +KS R+ G+SQ + K L + S L+ E G+ + K+ + I Sbjct: 12 IKSKRRSLGISQADMAKKLSISPSYLNLIESGKRKISVDLLLKVANELGIEISDI 66 >gi|77412917|ref|ZP_00789121.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161057|gb|EAO72164.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 76 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +R+ + Q+E+A ++ + +E G ++ + L ++ + D++ Sbjct: 14 KRLKSLRQESGLKQQEIAPLLGIKQNTYSDWETGKSEPNLENVVKLAKLFKTTTDFLL 71 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 37/63 (58%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLKS+R++ G+ Q E LLG+ +T S++E G++ P ++ K+ ++ K D Sbjct: 9 NFIFPKRLKSLRQESGLKQQEIAPLLGIKQNTYSDWETGKSEPNLENVVKLAKLFKTTTD 68 Query: 171 WIY 173 ++ Sbjct: 69 FLL 71 >gi|296110822|ref|YP_003621203.1| hypothetical protein LKI_03460 [Leuconostoc kimchii IMSNU 11154] gi|295832353|gb|ADG40234.1| hypothetical protein LKI_03460 [Leuconostoc kimchii IMSNU 11154] Length = 93 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 K +G I+ +R AN TQ ++A + +S + +ENG I + + Sbjct: 24 KHIGNNIRYLRYANKITQYQLAKILHVTQSTIAHYENGTRIPDIDNLMDIARNLG 78 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++ +R ++Q + K+L + ST+++YE G IP+I I + ++ Sbjct: 25 HIGNNIRYLRYANKITQYQLAKILHVTQSTIAHYENGTRIPDIDNLMDIARNLGADMN 82 >gi|27497171|gb|AAN64201.1| Orf9 [Photorhabdus luminescens] Length = 130 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 32/88 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D G + IRK+ TQ ++A + V +E G Y + L E+S D Sbjct: 13 MTDFGKNLSSIRKSRQLTQLKLADLLDIQPRMVGRWEQGKAKPQFDYIIKLAQILEVSID 72 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + G+ E KRL A Sbjct: 73 HLLLGDKGSAAPEFDIKNKRLKELCKQA 100 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 L G L SIRK + ++Q++ LL + + +EQG+ P+ K+ Q+ + Sbjct: 11 LSMTDFGKNLSSIRKSRQLTQLKLADLLDIQPRMVGRWEQGKAKPQFDYIIKLAQILEVS 70 Query: 169 LDWIYFGDE 177 +D + GD+ Sbjct: 71 IDHLLLGDK 79 >gi|15903016|ref|NP_358566.1| hypothetical protein spr0972 [Streptococcus pneumoniae R6] gi|116515940|ref|YP_816428.1| hypothetical protein SPD_0951 [Streptococcus pneumoniae D39] gi|148989105|ref|ZP_01820495.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae SP6-BS73] gi|149019666|ref|ZP_01834985.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae SP23-BS72] gi|168491958|ref|ZP_02716101.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168494498|ref|ZP_02718641.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|221231810|ref|YP_002510962.1| DNA_binding protein [Streptococcus pneumoniae ATCC 700669] gi|225854561|ref|YP_002736073.1| hypothetical protein SPJ_1004 [Streptococcus pneumoniae JJA] gi|15458585|gb|AAK99776.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076516|gb|ABJ54236.1| conserved hypothetical protein [Streptococcus pneumoniae D39] gi|147925328|gb|EDK76406.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae SP6-BS73] gi|147931041|gb|EDK82021.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae SP23-BS72] gi|183573788|gb|EDT94316.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183575609|gb|EDT96137.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|220674270|emb|CAR68810.1| putative DNA_binding protein [Streptococcus pneumoniae ATCC 700669] gi|225724252|gb|ACO20105.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|301794185|emb|CBW36602.1| putative DNA_binding protein [Streptococcus pneumoniae INV104] gi|332202922|gb|EGJ16990.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 73 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R+ ++ TQK++A + SA E G + + + L N Y++S D++ + Sbjct: 3 RRLRDLREDHDLTQKQIAKILSFTNSAYAKIERGEHTLTADVLVTLSNFYDVSTDYLLEL 62 Query: 94 EVIDRR 99 + Sbjct: 63 TDFPDK 68 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+D ++Q + K+L NS + E+G + D++ Sbjct: 1 MYRRLRDLREDHDLTQKQIAKILSFTNSAYAKIERGEHTLTADVLVTLSNFYDVSTDYLL 60 >gi|310766355|gb|ADP11305.1| hypothetical protein EJP617_16240 [Erwinia sp. Ejp617] gi|310766360|gb|ADP11310.1| hypothetical protein EJP617_16290 [Erwinia sp. Ejp617] gi|310768308|gb|ADP13258.1| hypothetical protein EJP617_35770 [Erwinia sp. Ejp617] Length = 129 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 P ++ RL +R+ G+SQ +G+ ++ YE G+ P I +KI D Sbjct: 10 PMSLSERLFELRRQHGLSQQAMADAVGIHANSWKKYETGQAQPSIDILKKIATALHVSTD 69 Query: 171 WIYFGDEVIVPK 182 ++ F VP+ Sbjct: 70 FLLFDAHERVPE 81 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ ++R+ + +Q+ MA ++ +E G SI + +S D++ Sbjct: 13 LSERLFELRRQHGLSQQAMADAVGIHANSWKKYETGQAQPSIDILKKIATALHVSTDFLL 72 Query: 92 DG 93 Sbjct: 73 FD 74 >gi|317132632|ref|YP_004091946.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315470611|gb|ADU27215.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 74 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 31/66 (46%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +K +G I RK +Q ++A + + ++ EN C+ S+ + + I+ Sbjct: 7 EKYKKLGLNIAYYRKERGLSQMQLADAIDISRTHMSRIENNDCAVSLDVIFSIADALNIA 66 Query: 87 FDWIYD 92 + +++ Sbjct: 67 VEKLFE 72 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 23/57 (40%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RK++G+SQ++ + + + +S E + I ++ ++ Sbjct: 15 NIAYYRKERGLSQMQLADAIDISRTHMSRIENNDCAVSLDVIFSIADALNIAVEKLF 71 >gi|260583645|ref|ZP_05851393.1| prophage Sa05, DNA-binding protein [Granulicatella elegans ATCC 700633] gi|260158271|gb|EEW93339.1| prophage Sa05, DNA-binding protein [Granulicatella elegans ATCC 700633] Length = 133 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G + ++R+ +Q+E+A +S+V +E+G + L L + +S D++ Sbjct: 4 GYLLSELRREKRLSQEELAKIIGTSQSSVGHWESGRRNIPQDKLLQLSKYFNVSIDYLLG 63 Query: 93 GEVIDRRYEDVTNKKRL 109 ++Y D++ Sbjct: 64 ISKSRKKYYDLSRDNNF 80 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G L +R++K +SQ E K++G S++ ++E GR ++ + +D+ Sbjct: 1 MSTGYLLSELRREKRLSQEELAKIIGTSQSSVGHWESGRRNIPQDKLLQLSKYFNVSIDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|307151755|ref|YP_003887139.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981983|gb|ADN13864.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 78 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 TP+ K G R++ +R+ +Q+ +A N S + E G + S+ + + Sbjct: 3 TPDDNDIRKQFGNRLRYLRQTRGLSQEALADLCNLDRSYIGGVERGERNISLLNIKKIAD 62 Query: 82 EYEISFDWIYDGEVID 97 IS +D + Sbjct: 63 ALGISPKEFFDEQDSR 78 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G RL+ +R+ +G+SQ L + S + E+G + +KI + Sbjct: 13 FGNRLRYLRQTRGLSQEALADLCNLDRSYIGGVERGERNISLLNIKKIADALGISPKEFF 72 Query: 174 FGDEV 178 + Sbjct: 73 DEQDS 77 >gi|183599591|ref|ZP_02961084.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827] gi|188021839|gb|EDU59879.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827] Length = 207 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +RI+ R+ N TQ E+A A + ++ ENG R + + + +W+ Sbjct: 3 LASRIRQRRQELNLTQTELAEKAGISQQSIESIENGRTK-KPRNIIEIAKALQSHPEWLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +G+ I E + + L Y K Sbjct: 62 NGKSIMPISEVNSRRIPLLSYVQAGLFKDA 91 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ +R++ R++ ++Q E + G+ ++ + E GRT + + +I + + H +W Sbjct: 1 MSLASRIRQRRQELNLTQTELAEKAGISQQSIESIENGRTK-KPRNIIEIAKALQSHPEW 59 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + G ++ + + S K +NP Sbjct: 60 LLNGKSIMPISEVNSRRIPLLSYVQAGLFKDANP 93 >gi|168183925|ref|ZP_02618589.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|237795812|ref|YP_002863364.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182672917|gb|EDT84878.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|229263033|gb|ACQ54066.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 78 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R+D G++Q + G+L+G+ ++ E G+ P I A I +V ++ ++ Sbjct: 1 MKNKLKQFREDLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHGTIEEVF 60 Query: 174 FGDEVIVPKSIKRAKG 189 +E ++++G Sbjct: 61 LFEESERKSRAEKSRG 76 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R+ TQ+++ A+N E G SI A + + + + ++ Sbjct: 3 NKLKQFREDLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHGTIEEVFLF 62 Query: 94 EVIDRRYEDVTNK 106 E +R+ ++ Sbjct: 63 EESERKSRAEKSR 75 >gi|167567607|ref|ZP_02360523.1| DNA-binding protein [Burkholderia oklahomensis EO147] Length = 188 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +RK T +A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLFSD 62 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLFSDSH 64 Query: 178 VIVPKSIKRAKGNQS 192 ++ RA S Sbjct: 65 DRELITVTRASERTS 79 >gi|150398499|ref|YP_001328966.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030014|gb|ABR62131.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 209 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 30/92 (32%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P + + + ++ +R+ N T E+A S ++ ENG S + L L Sbjct: 10 APPRPRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPTYDTILSLAE 69 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYA 113 ++ T + D A Sbjct: 70 GLGADVAELFARRQTTTVSGRRTINRAGDGVA 101 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 30/79 (37%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + + +I L+ +R++ G++ E + + STLS E G+ P Sbjct: 1 MTNDLVPLDAPPRPRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPT 60 Query: 155 IKPARKIKQVTKKHLDWIY 173 + + + ++ Sbjct: 61 YDTILSLAEGLGADVAELF 79 >gi|327183267|gb|AEA31714.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1118] Length = 241 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K++RK +N T ++ + +ENG I L N + +S ++ Sbjct: 2 IKNRLKEMRKKHNFTLDDIQKMTGIKRGTYSNYENGNTEPKIETWQKLANFFGVSVPYL 60 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RLK +RK + + K+ G+ T SNYE G T P+I+ +K+ + ++ Sbjct: 1 MIKNRLKEMRKKHNFTLDDIQKMTGIKRGTYSNYENGNTEPKIETWQKLANFFGVSVPYL 60 >gi|296450846|ref|ZP_06892596.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879151|ref|ZP_06903146.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260317|gb|EFH07162.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429694|gb|EFH15546.1| DNA-binding protein [Clostridium difficile NAP07] Length = 169 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 2 LSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Query: 92 DGEVIDRRYEDVT 104 +++ +++ Sbjct: 62 GETIVELEVDNLK 74 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKSIKRAK 188 E IV + K Sbjct: 61 LG--ETIVELEVDNLK 74 >gi|154504997|ref|ZP_02041735.1| hypothetical protein RUMGNA_02507 [Ruminococcus gnavus ATCC 29149] gi|153794880|gb|EDN77300.1| hypothetical protein RUMGNA_02507 [Ruminococcus gnavus ATCC 29149] Length = 147 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K +R+ N+ TQ++MA AV+ +E G + L E+E+S + + Sbjct: 7 LKKLREKNSLTQEQMAKRVMVTRQAVSRWETGETQPNTDTLKLLSQEFEVSVNTLL 62 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK +R+ ++Q + K + + +S +E G T P + + Q + ++ Sbjct: 1 MEMKDVLKKLREKNSLTQEQMAKRVMVTRQAVSRWETGETQPNTDTLKLLSQEFEVSVNT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|114324653|gb|ABI63635.1| unknown [Streptococcus salivarius] Length = 264 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K R+ +R+A T+KE + + + V +ENG + + + + L + ++ D+ Sbjct: 13 KMFTDRLIKLRQARGWTKKEFSAKIGKTQQTVGKWENGSNAPTFKDLVKLVGLFGVTSDY 72 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + G + K + Sbjct: 73 LL-GLSDSPSKYAYPPINDNKQEQVEEMFKEL 103 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 32/86 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL +R+ +G ++ EF +G T+ +E G P K K+ + D++ Sbjct: 14 MFTDRLIKLRQARGWTKKEFSAKIGKTQQTVGKWENGSNAPTFKDLVKLVGLFGVTSDYL 73 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + N+ + + Sbjct: 74 LGLSDSPSKYAYPPINDNKQEQVEEM 99 >gi|49187883|ref|YP_031136.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|167634898|ref|ZP_02393216.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167639942|ref|ZP_02398210.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685616|ref|ZP_02876839.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707037|ref|ZP_02897494.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177652240|ref|ZP_02934743.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567224|ref|ZP_03020139.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033157|ref|ZP_03100570.1| DNA-binding protein [Bacillus cereus W] gi|218906227|ref|YP_002454061.1| DNA-binding protein [Bacillus cereus AH820] gi|227817802|ref|YP_002817811.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229603307|ref|YP_002869269.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254687363|ref|ZP_05151220.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254725376|ref|ZP_05187159.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254733728|ref|ZP_05191444.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254740566|ref|ZP_05198257.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254753172|ref|ZP_05205208.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761515|ref|ZP_05213536.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|49181810|gb|AAT57186.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|167512023|gb|EDR87401.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529648|gb|EDR92397.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128140|gb|EDS97010.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170670080|gb|EDT20820.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172082246|gb|EDT67312.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561728|gb|EDV15698.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195994586|gb|EDX58541.1| DNA-binding protein [Bacillus cereus W] gi|218539421|gb|ACK91819.1| DNA-binding protein [Bacillus cereus AH820] gi|227005411|gb|ACP15154.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229267715|gb|ACQ49352.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 73 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R++++R + +Q ++ ++L E G + SI +L + + + + + I+ Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIFT 63 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +R +SQ + GK +G T+S E+G P I + KI + ++ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEE 60 Query: 172 IYF 174 I+ Sbjct: 61 IFT 63 >gi|309777464|ref|ZP_07672419.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914778|gb|EFP60563.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IKD+RK +QKE+A S ++ E + S L + + Sbjct: 9 IGGKIKDLRKQRGLSQKELASSIGISASFLSDIEKERSNPSFDKLQRLCVVLNVQPGYFL 68 Query: 92 DGEVI 96 E Sbjct: 69 SHENT 73 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++K +RK +G+SQ E +G+ S LS+ E+ R+ P +++ V Sbjct: 6 CMHIGGKIKDLRKQRGLSQKELASSIGISASFLSDIEKERSNPSFDKLQRLCVVLNVQPG 65 Query: 171 WIYFGDEVIVP 181 + + Sbjct: 66 YFLSHENTYSE 76 >gi|218289581|ref|ZP_03493801.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|258511692|ref|YP_003185126.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240231|gb|EED07414.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|257478418|gb|ACV58737.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 145 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ IR++ +Q+E+A+ A ++ E S+ YA L + + + Sbjct: 5 FGARVRAIRQSRGWSQQELAMRAGVSTPHISSIERDKRRPSLDYAKRLADALGVPLQVLC 64 Query: 92 DGEVIDRRYEDVTNKKRL 109 D E+ + L Sbjct: 65 DPEMTYEPKRMRNSVYEL 82 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 37/75 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + GAR+++IR+ +G SQ E G+ +S+ E+ + P + A+++ L + Sbjct: 4 SFGARVRAIRQSRGWSQQELAMRAGVSTPHISSIERDKRRPSLDYAKRLADALGVPLQVL 63 Query: 173 YFGDEVIVPKSIKRA 187 + PK ++ + Sbjct: 64 CDPEMTYEPKRMRNS 78 >gi|194016509|ref|ZP_03055123.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194011982|gb|EDW21550.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 153 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +RK + TQ+E+A AV +E+G I L Y ++ D + Sbjct: 10 INMNLKKMRKIHRFTQEEVAEKIGVSRQAVAKWESGETVPDINNCKALAELYGVALDDLV 69 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K + Sbjct: 70 NNLDGTEVAGVKPKGKHI 87 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK +RK +Q E + +G+ ++ +E G T+P+I + + ++ LD Sbjct: 8 NMINMNLKKMRKIHRFTQEEVAEKIGVSRQAVAKWESGETVPDINNCKALAELYGVALDD 67 Query: 172 IY 173 + Sbjct: 68 LV 69 >gi|297162225|gb|ADI11937.1| putative transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 190 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 25/72 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ Q + + +K R T +A + + E + S+ + L + Sbjct: 3 DLDQLTQSLARNLKRWRNERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADAL 62 Query: 84 EISFDWIYDGEV 95 +S + D E Sbjct: 63 GVSITTLLDYES 74 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 20/58 (34%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK R ++G + G+ + EQ RT P + K+ + + Sbjct: 13 RNLKRWRNERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLL 70 >gi|300860062|ref|ZP_07106150.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|300850880|gb|EFK78629.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|315145159|gb|EFT89175.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315163067|gb|EFU07084.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|327534455|gb|AEA93289.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 232 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G + + + + Q+ + L + Sbjct: 66 WLLYGNFDRFVRQLIKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 115 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD-EVIVPKSIKRAKGNQSSKK 195 +DW+ +G+ + V + IK N+ K Sbjct: 61 DTTVDWLLYGNFDRFVRQLIKENFQNKQLLK 91 >gi|84385211|ref|ZP_00988243.1| DNA-binding protein [Vibrio splendidus 12B01] gi|84379808|gb|EAP96659.1| DNA-binding protein [Vibrio splendidus 12B01] Length = 188 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 27/89 (30%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q VG +K +R+ + + A ++ + E G S ++ + + +E+S Sbjct: 2 QTEIKVGVNLKRLRQEKGWSLDKTAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 + L Sbjct: 62 LSSFIAASSNSELTSLFRDANELRHEEYN 90 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R++KG S + K G+ + L E+G + P + +I + L Sbjct: 10 NLKRLRQEKGWSLDKTAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVSLSSFI 66 >gi|312865635|ref|ZP_07725859.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098756|gb|EFQ56976.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 139 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK++R + K+++++A + +E G I + L + + S D++ Sbjct: 4 LADRIKEMRVDSGKSKEQVATYLAVELKTYSRYETGERKPDIEKLVQLADYFYCSIDYLL 63 Query: 92 DGEVIDRRYEDVTNK 106 +V+ ++ Sbjct: 64 GRDVVTNFDTVPRDQ 78 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+K +R D G S+ + L + T S YE G P+I+ ++ +D Sbjct: 1 MTVLADRIKEMRVDSGKSKEQVATYLAVELKTYSRYETGERKPDIEKLVQLADYFYCSID 60 Query: 171 WIYFGD 176 ++ D Sbjct: 61 YLLGRD 66 >gi|300825209|ref|ZP_07105298.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|300522328|gb|EFK43397.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|323968639|gb|EGB64044.1| helix-turn-helix protein [Escherichia coli M863] Length = 216 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 27/84 (32%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G R+K +RK TQ E+ + + +E + + L + Sbjct: 3 MESLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTES 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPY 112 ++ G N PY Sbjct: 63 YLLYGVSSTEPTLVQNNSGTQIPY 86 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 38/79 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RKDKG++Q+E GKL G+ T+ +E+ P K K+ Q ++ +G Sbjct: 10 LKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLLYGVS 69 Query: 178 VIVPKSIKRAKGNQSSKKS 196 P ++ G Q S Sbjct: 70 STEPTLVQNNSGTQIPYLS 88 >gi|283796605|ref|ZP_06345758.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] gi|291076025|gb|EFE13389.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] Length = 177 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 35/90 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K++R TQ+E+A A + ++ E + S SI + + + + Sbjct: 3 IGAKLKELRVLKGLTQEELADRAELSKGFISQVERDLTSPSIATLMDILQCLGTTIGEFF 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + + + +K I Sbjct: 63 AETADEQIVFGKNDFFIKEDGELKNTVKWI 92 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IGA+LK +R KG++Q E + +S E+ T P I I Q + Sbjct: 1 MSIGAKLKELRVLKGLTQEELADRAELSKGFISQVERDLTSPSIATLMDILQCLGTTIGE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|290894443|ref|ZP_06557403.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|290556004|gb|EFD89558.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] Length = 169 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKS 183 G+ V+V K Sbjct: 61 L-GETVMVSKV 70 >gi|187933387|ref|YP_001884799.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|187721540|gb|ACD22761.1| putative DNA-binding protein [Clostridium botulinum B str. Eklund 17B] Length = 124 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R++ + K+ A N + + +E G + + + ++ S D+I Sbjct: 6 ERLKELRESKDLLSKDFAKIMNVEPATITNWEKGNRFPKDDVLIKIADYFDCSIDYILGR 65 Query: 94 EVIDRRYEDVTN 105 + Sbjct: 66 TDNPCAKIYLGK 77 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK +R+ K + +F K++ + +T++N+E+G P+ KI +D Sbjct: 1 MSKFPERLKELRESKDLLSKDFAKIMNVEPATITNWEKGNRFPKDDVLIKIADYFDCSID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 +I + K I K + + + + DK Sbjct: 61 YILGRTDNPCAK-IYLGKLHDKTVELEIDK 89 >gi|326405603|gb|ADZ62674.1| transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 185 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G ++ R A TQ+E+A A++ +E+ + + L YE Sbjct: 2 LGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKAEPNFETLIALAELYESDL 57 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G L+ R + ++Q E K L +S +E + P + + ++ + L Sbjct: 1 MLGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKAEPNFETLIALAELYESDLSAF 60 Query: 173 YFGDEVIVPK 182 G E K Sbjct: 61 AQGIEPQKRK 70 >gi|300710183|ref|YP_003735997.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3] gi|299123866|gb|ADJ14205.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3] Length = 71 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K R + TQ ++A + ++ E G + S+ A +L ++ S + I++ Sbjct: 5 LKVRRARHELTQSDLAEAVDVSRQTISAIEAGRYNPSLELAFHLAEYFDCSIEDIFE 61 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R ++Q + + + + T+S E GR P ++ A + + ++ I+ Sbjct: 1 MKNDLKVRRARHELTQSDLAEAVDVSRQTISAIEAGRYNPSLELAFHLAEYFDCSIEDIF 60 >gi|257418469|ref|ZP_05595463.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|257160297|gb|EEU90257.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] Length = 250 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 24 KQVGARMRETRKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 133 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYE 147 +I Y+ + K + +GAR++ RK K + +G+ + ST+SN+E Sbjct: 2 YILRTPYPHIYYKRSVSMK-ITTKQVGARMRETRKKKKYTLRYLANKIGLSSGSTISNWE 60 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 G +P + +KI + +DW+ +GD Sbjct: 61 LGLNLPNKRYLKKIAKACDTTVDWLLYGD 89 >gi|225377083|ref|ZP_03754304.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM 16841] gi|225210988|gb|EEG93342.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM 16841] Length = 240 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+K++R TQ+E+A + + ++ E + SI L + + Sbjct: 63 DIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNTPSIGTLLDIIQCLGTTPAEF 122 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E ++ + + Sbjct: 123 FTDEEPEQIVFKNEDFFTKVNEDKHNII 150 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R G++Q E + +S E+ + P I I Q Sbjct: 62 MDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNTPSIGTLLDIIQCLGTTPAE 121 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + +E P+ I K K +DK + Sbjct: 122 FFTDEE---PEQIVF-KNEDFFTKVNEDKHN 148 >gi|209965957|ref|YP_002298872.1| hypothetical protein RC1_2685 [Rhodospirillum centenum SW] gi|209959423|gb|ACJ00060.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 480 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +G +++ +R+ TQ +MA S +NL E+ ++ L + Y+ Sbjct: 1 MTEKKAMLGHKVRRLRRDLKLTQAQMADELGISPSYLNLIESNQRPLTVPLLLKIGQIYD 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + E + R + DP + +K Sbjct: 61 VDLS--TFAETDETRLVAGLKEVFADPLFETSDIK 93 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +++ +R+D ++Q + LG+ S L+ E + + KI Q+ L Sbjct: 7 MLGHKVRRLRRDLKLTQAQMADELGISPSYLNLIESNQRPLTVPLLLKIGQIYDVDLSTF 66 Query: 173 YFGDEVIVPKSIKR 186 DE + +K Sbjct: 67 AETDETRLVAGLKE 80 >gi|164687400|ref|ZP_02211428.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] gi|164603174|gb|EDQ96639.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] Length = 179 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G++IK +R TQ+E+A + ++ EN + S SI + + + Sbjct: 2 DIGSKIKSMRMEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLREF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ +R + + + LK + Sbjct: 62 FNEIDPERITFKKEDMFETEDEELKYHLKWL 92 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+++KS+R +K ++Q E + +S E T P I I ++ +L Sbjct: 1 MDIGSKIKSMRMEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLRE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + I P+ I K + + ++ Sbjct: 61 FF---NEIDPERITFKKEDMFETEDEE 84 >gi|149920158|ref|ZP_01908630.1| transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149818924|gb|EDM78363.1| transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 113 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 38/99 (38%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + +++G R+++ R+ +Q+++A A + + E G + S+ + N Sbjct: 8 SKRELTHEELGDRVRERRRELGLSQEKLAEKAQVSKETIGRLEQGGGTPSLFTVRKVANA 67 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + G+ D V + ++++ Sbjct: 68 LGETVSALLAGQAGDEVSALVQALPEYEQQIACVMVRAL 106 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 +D +K+ L +G R++ R++ G+SQ + + + T+ EQG P + Sbjct: 1 MLSQDELSKRELTHEELGDRVRERRRELGLSQEKLAEKAQVSKETIGRLEQGGGTPSLFT 60 Query: 158 ARKIKQVTKKHLDWIYFG 175 RK+ + + + G Sbjct: 61 VRKVANALGETVSALLAG 78 >gi|149924176|ref|ZP_01912553.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149814977|gb|EDM74537.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 141 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 ET + ++ +++ E + +G RI++ R+A T K M+ N S ++ E Sbjct: 55 RETVARVARKKGIVVRRE-DELHLTIGKRIREFRRARELTLKHMSRRTNLSVSLLSQIER 113 Query: 67 GMCSTSIRYALYLRNEYEISFDWIY 91 S S+ + N ++ ++ Sbjct: 114 AESSASVSSLYKIANALDVRISELF 138 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 24/63 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R++ R+ + ++ + + S LS E+ + + KI + Sbjct: 76 HLTIGKRIREFRRARELTLKHMSRRTNLSVSLLSQIERAESSASVSSLYKIANALDVRIS 135 Query: 171 WIY 173 ++ Sbjct: 136 ELF 138 >gi|116510851|ref|YP_808067.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116106505|gb|ABJ71645.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 107 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RK N +Q+E+A + ++ +E G + + L ++ S D + Sbjct: 2 EISEIIKENRKLKNLSQEELAKELHISRQSILKWETGKSLPTTDQLILLSEIFDCSLDTL 61 Query: 91 YDGEVIDRRYED 102 G+ Sbjct: 62 LKGDKKMEEKVK 73 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +K RK K +SQ E K L + ++ +E G+++P + ++ LD Sbjct: 1 MEISEIIKENRKLKNLSQEELAKELHISRQSILKWETGKSLPTTDQLILLSEIFDCSLDT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + GD+ + K ++ K Sbjct: 61 LLKGDKKMEEKVKHEIDDKRTLK 83 >gi|89899047|ref|YP_521518.1| transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343784|gb|ABD67987.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 197 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 30/71 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R+ T E++ + ++ E G+ S S++ + + W++ Sbjct: 16 LGMQVRQRRRIKGLTLTELSQQSGLSVGLLSQIERGLSSPSLKSMTQICTALGVPLSWLF 75 Query: 92 DGEVIDRRYED 102 D ++ E Sbjct: 76 DNGPLENPAEK 86 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ R+ KG++ E + G+ LS E+G + P +K +I L W Sbjct: 14 MGLGMQVRQRRRIKGLTLTELSQQSGLSVGLLSQIERGLSSPSLKSMTQICTALGVPLSW 73 Query: 172 IY 173 ++ Sbjct: 74 LF 75 >gi|84515360|ref|ZP_01002722.1| transcriptional regulator, XRE family [Loktanella vestfoldensis SKA53] gi|84510643|gb|EAQ07098.1| transcriptional regulator, XRE family [Loktanella vestfoldensis SKA53] Length = 130 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 4/113 (3%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 +PE + G R+ R+A +QK++A + + +EN L Sbjct: 10 SPEAATF----GDRLAGAREAAGLSQKDLAKSLGVKFATLVSWENDTGEPRANRLQMLAG 65 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 +S W+ G D + + + ++ +R + + G+ Sbjct: 66 MLGVSLGWLMTGLGDGLAAPDDATEIPANVAVLMQEMRRLRAQMVQTLDKMGQ 118 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L R+ G+SQ + K LG+ +TL ++E P + + + L W+ G Sbjct: 20 LAGAREAAGLSQKDLAKSLGVKFATLVSWENDTGEPRANRLQMLAGMLGVSLGWLMTG 77 >gi|224823653|ref|ZP_03696762.1| putative phage repressor [Lutiella nitroferrum 2002] gi|224604108|gb|EEG10282.1| putative phage repressor [Lutiella nitroferrum 2002] Length = 324 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ R+ TQ E+A +N ENG + ++ L + +S W+ Sbjct: 97 LGKRVTHARELKGLTQLELAKRVGVSAQTINFVENGRNKGT-KHLLAIAKALGVSATWLD 155 Query: 92 DGEVIDRR 99 G+ Sbjct: 156 SGKGSMTE 163 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 1/96 (1%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + +G R+ R+ KG++Q+E K +G+ T++ E G Sbjct: 73 LLISQPDSISQCRSQVYNNCSMDTLGKRVTHARELKGLTQLELAKRVGVSAQTINFVENG 132 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 R K I + W+ G + S++ Sbjct: 133 RNKGT-KHLLAIAKALGVSATWLDSGKGSMTEVSLR 167 >gi|188588059|ref|YP_001921522.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188498340|gb|ACD51476.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 114 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K++R + +Q ++A N + AV+ +E G+ L N + +S D++ Sbjct: 5 IMNRLKELRIEKDLSQAKLAELFNISQQAVSHYEKGIRDIDSSLIKTLSNFFSVSSDYLL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 I +D L L Sbjct: 65 GISDIRNYTDDPNVTISLHSDTDYDDL 91 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I RLK +R +K +SQ + +L + +S+YE+G + + + D++ Sbjct: 5 IMNRLKELRIEKDLSQAKLAELFNISQQAVSHYEKGIRDIDSSLIKTLSNFFSVSSDYLL 64 >gi|154504585|ref|ZP_02041323.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC 29149] gi|260590057|ref|ZP_05855970.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|153795067|gb|EDN77487.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC 29149] gi|260539569|gb|EEX20138.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 65 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I+ RKA +Q E+A + ++ +ENG + +I + E S D I Sbjct: 2 NLGENIRKARKAAGVSQSELAERLQVHQKDISRWENGAHAPTIEMFAKICRELNASADEI 61 Query: 91 YDGE 94 + + Sbjct: 62 LELK 65 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ RK G+SQ E + L + +S +E G P I+ KI + D Sbjct: 1 MNLGENIRKARKAAGVSQSELAERLQVHQKDISRWENGAHAPTIEMFAKICRELNASADE 60 Query: 172 IY 173 I Sbjct: 61 IL 62 >gi|148998894|ref|ZP_01826330.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae SP11-BS70] gi|168576210|ref|ZP_02722104.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194397548|ref|YP_002037696.1| hypothetical protein SPG_0986 [Streptococcus pneumoniae G54] gi|225856709|ref|YP_002738220.1| hypothetical protein SPP_1071 [Streptococcus pneumoniae P1031] gi|307067756|ref|YP_003876722.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|147755321|gb|EDK62372.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae SP11-BS70] gi|183577909|gb|EDT98437.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194357215|gb|ACF55663.1| conserved domain protein [Streptococcus pneumoniae G54] gi|225725852|gb|ACO21704.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|306409293|gb|ADM84720.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|332200556|gb|EGJ14628.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 73 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R+ ++ TQK++A + +SA E G + + + L N Y++S D++ Sbjct: 3 RRLRDLREDHDLTQKQIAKILSFTDSAYAKIERGEHTLTADILVTLSNFYDVSTDYLLGL 62 Query: 94 EVIDRR 99 + Sbjct: 63 TDFPDK 68 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 28/73 (38%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+D ++Q + K+L +S + E+G + D++ Sbjct: 1 MYRRLRDLREDHDLTQKQIAKILSFTDSAYAKIERGEHTLTADILVTLSNFYDVSTDYLL 60 Query: 174 FGDEVIVPKSIKR 186 + ++ Sbjct: 61 GLTDFPDKIRFRK 73 >gi|134298370|ref|YP_001111866.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051070|gb|ABO49041.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 100 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 9/77 (11%), Positives = 26/77 (33%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 TQ+++A V+ +E G + + ++++ D++ + + Sbjct: 1 MTQEQLAQQLGFTRGQVSNYEQGSREPDFETLKKIADFFKVTTDYMLGRTDDPTPVDKLI 60 Query: 105 NKKRLDPYAIGARLKSI 121 L +K + Sbjct: 61 ELSALAGQQKFDPMKEL 77 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 M+Q + + LG +SNYEQG P+ + +KI K D++ + P Sbjct: 1 MTQEQLAQQLGFTRGQVSNYEQGSREPDFETLKKIADFFKVTTDYMLGRTDDPTP 55 >gi|332655408|ref|ZP_08421147.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515703|gb|EGJ45314.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 166 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RI+++RK TQ+++A +AV +ENG+ + + L +++S +++ Sbjct: 1 MGQRIQELRKDAGLTQEQLAQRIGVSMAAVRNYENGLREPNSKAMAALERFFKVSGEYL 59 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R++ +RKD G++Q + + +G+ + + NYE G P K +++ K +++ Sbjct: 1 MGQRIQELRKDAGLTQEQLAQRIGVSMAAVRNYENGLREPNSKAMAALERFFKVSGEYL 59 >gi|332523455|ref|ZP_08399707.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332314719|gb|EGJ27704.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 359 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 7/101 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I R TQ++++ + ++ ++ +EN I Y + L ++++ D + Sbjct: 2 IGDTIFLERTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILLAKLFDMTLDDLV 61 Query: 92 -------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 D E + + + + ++ + K Sbjct: 62 GFQKTLTDFERTELFNQLKEKINQTEELEFFQEIEELSKHY 102 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 31/79 (39%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 R GM+Q + L + +T+S +E + P+I + ++ LD + + + Sbjct: 10 RTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILLAKLFDMTLDDLVGFQKTLTD 69 Query: 182 KSIKRAKGNQSSKKSKKDK 200 K ++ ++ Sbjct: 70 FERTELFNQLKEKINQTEE 88 >gi|283782136|ref|YP_003372891.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440589|gb|ADB19031.1| transcriptional regulator, XRE family [Pirellula staleyi DSM 6068] Length = 202 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 39/116 (33%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +RKA T +++A + S ++ E G + ++ A + + ++ + D Sbjct: 20 DRVRSMRKAKGWTLEQLASLSGVSRSMLSEIERGSANPTLGVAFRIAQAFGMTLGDLVDS 79 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + DV IR + + + + T E Sbjct: 80 PEPPKPRIDVIRSDDRSFMFRDDSDCRIRTLSPLHLEKDVEFYELTLRTGGKLESQ 135 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++S+RK KG + + L G+ S LS E+G P + A +I Q L + E Sbjct: 22 VRSMRKAKGWTLEQLASLSGVSRSMLSEIERGSANPTLGVAFRIAQAFGMTLGDLVDSPE 81 Query: 178 VIVPK 182 P+ Sbjct: 82 PPKPR 86 >gi|253580755|ref|ZP_04858019.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848126|gb|EES76092.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 220 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY- 78 ++ + ++ K +G+RIK R N TQ +A S + +ENG + + L Sbjct: 27 AVSMKDKELRKLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEG 86 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 L +S +W+ GE + + ++ A+G L+ + Sbjct: 87 LSEALHVSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 128 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 2/115 (1%) Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 L + I+ + E V+ K + IG+R+K R + ++Q + Sbjct: 1 MLKINIALHIAISEKQCYNSYIPKKEAVSMKDKELRKLIGSRIKQRRLELNLTQPYVAEK 60 Query: 136 LGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDEVIVPKSIKRAKG 189 +G+ ST+ YE G K + + + ++W+ G+ I + Sbjct: 61 MGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-KGETDEYETDITDKRE 114 >gi|261415442|ref|YP_003249125.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371898|gb|ACX74643.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326318|gb|ADL25519.1| DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 149 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V + +R N TQ +MA + AV+ +E G + + E+ +S + + Sbjct: 2 EVREVLLKLRSNQNLTQDQMAERLHVTRQAVSRWETGETQPNTEMLKVISREFNVSINTL 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L +R ++ ++Q + + L + +S +E G T P + + I + ++ Sbjct: 1 MEVREVLLKLRSNQNLTQDQMAERLHVTRQAVSRWETGETQPNTEMLKVISREFNVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|229546719|ref|ZP_04435444.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|256854280|ref|ZP_05559644.1| transcriptional regulator [Enterococcus faecalis T8] gi|307275291|ref|ZP_07556434.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290889|ref|ZP_07570779.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|229308068|gb|EEN74055.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|256709840|gb|EEU24884.1| transcriptional regulator [Enterococcus faecalis T8] gi|306497959|gb|EFM67486.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306507925|gb|EFM77052.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|315029743|gb|EFT41675.1| helix-turn-helix protein [Enterococcus faecalis TX4000] Length = 232 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMVRLSEEQLSYHDSLKI 115 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD 176 +DW+ +GD Sbjct: 61 DTTVDWLLYGD 71 >gi|187934570|ref|YP_001886346.1| hypothetical protein CLL_A2157 [Clostridium botulinum B str. Eklund 17B] gi|188589133|ref|YP_001921361.1| hypothetical protein CLH_1980 [Clostridium botulinum E3 str. Alaska E43] gi|251778914|ref|ZP_04821834.1| conserved domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187722723|gb|ACD23944.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] gi|188499414|gb|ACD52550.1| conserved domain protein [Clostridium botulinum E3 str. Alaska E43] gi|243083229|gb|EES49119.1| conserved domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 69 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K R M+Q + + +G+ T++ EQG P IK R I + K LD Sbjct: 1 MGRNIPIKVARAQLDMTQKQLAEKVGISRQTMNAIEQGDYNPTIKLCRAICKALGKGLDD 60 Query: 172 IYFGDE 177 +++ +E Sbjct: 61 LFWEEE 66 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK R + TQK++A +N E G + +I+ + D ++ E Sbjct: 7 IKVARAQLDMTQKQLAEKVGISRQTMNAIEQGDYNPTIKLCRAICKALGKGLDDLFWEEE 66 Query: 96 IDR 98 D Sbjct: 67 NDE 69 >gi|160940816|ref|ZP_02088158.1| hypothetical protein CLOBOL_05710 [Clostridium bolteae ATCC BAA-613] gi|158436336|gb|EDP14103.1| hypothetical protein CLOBOL_05710 [Clostridium bolteae ATCC BAA-613] Length = 131 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + R++++RK +Q+E ++AV+ E G + + +E+ ++ Sbjct: 1 MKCLNERLRELRKKCGLSQEEFGKKLGVTKTAVSKMELGTYQITDTMLKLICSEFNVNEK 60 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 W+ GE + K L Sbjct: 61 WLRSGEGGEGDMFIKPQKNDL 81 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL+ +RK G+SQ EFGK LG+ + +S E G + I + Sbjct: 1 MKCLNERLRELRKKCGLSQEEFGKKLGVTKTAVSKMELGTYQITDTMLKLICSEFNVNEK 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 W+ G+ IK K + ++ ++ Sbjct: 61 WLRSGEGGEGDMFIKPQKNDLIARAAQ 87 >gi|86159419|ref|YP_466204.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775930|gb|ABC82767.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 477 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R+ + +G +++ +R+ N TQ ++A S +NL E+ + + L + +E Sbjct: 1 MREPGQHLGAKVRALRRQRNLTQAQLADRLGISASYLNLIEHHRRPLPAQLLIKLADLFE 60 Query: 85 ISFDWI 90 + + Sbjct: 61 LDLKSL 66 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 14/95 (14%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI--- 172 A+++++R+ + ++Q + LG+ S L+ E R + K+ + + L + Sbjct: 10 AKVRALRRQRNLTQAQLADRLGISASYLNLIEHHRRPLPAQLLIKLADLFELDLKSLSTE 69 Query: 173 -----------YFGDEVIVPKSIKRAKGNQSSKKS 196 FGD + P + A+ + S Sbjct: 70 HHARVVADLMEVFGDPLFEPHDVTNAEVRDLASSS 104 >gi|28379654|ref|NP_786546.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300769600|ref|ZP_07079486.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28272494|emb|CAD65418.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300493015|gb|EFK28197.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 212 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK RK ++Q + + L + T+S +E + P++ ++ + LD Sbjct: 1 MKFSEKLKVCRKHAQLTQSQVAEQLHVSRKTISGWENDHSFPDVGSLVQLSDIYDVRLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ ++ + + +Q S+K Sbjct: 61 LMR-DDHLLAYYKEAEQLHQKSRK 83 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQ ++A + ++ +EN + + L + Y++ D + Sbjct: 5 EKLKVCRKHAQLTQSQVAEQLHVSRKTISGWENDHSFPDVGSLVQLSDIYDVRLDDLMRD 64 Query: 94 E 94 + Sbjct: 65 D 65 >gi|47097555|ref|ZP_00235089.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|254854561|ref|ZP_05243909.1| transcriptional regulator [Listeria monocytogenes FSL R2-503] gi|254900900|ref|ZP_05260824.1| helix-turn-helix domain-containing protein [Listeria monocytogenes J0161] gi|254913887|ref|ZP_05263899.1| transcriptional regulator [Listeria monocytogenes J2818] gi|254938424|ref|ZP_05270121.1| transcriptional regulator [Listeria monocytogenes F6900] gi|47014066|gb|EAL05065.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|258607961|gb|EEW20569.1| transcriptional regulator [Listeria monocytogenes FSL R2-503] gi|258611038|gb|EEW23646.1| transcriptional regulator [Listeria monocytogenes F6900] gi|293591904|gb|EFG00239.1| transcriptional regulator [Listeria monocytogenes J2818] Length = 140 Score = 68.1 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +R+ N TQ+++A N ++ +E L Y +S +I Sbjct: 2 FGDRLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYIL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +E +R + + Sbjct: 62 GETDKKQYWELDDKDERSIQKDLQKMI 88 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 37/86 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL+S+R++K ++Q + L + LSNYE+ + P+ + +K+ + +I Sbjct: 1 MFGDRLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYI 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + K +K Sbjct: 61 LGETDKKQYWELDDKDERSIQKDLQK 86 >gi|325526296|gb|EGD03907.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 132 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGT I + R+A TQ ++A + + A++ +E G ++ L + + S D + Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRMPTLHRLQQLSDALDCSVDQLL 80 Query: 92 DGEVIDRRYE 101 + Sbjct: 81 QRGSKRPDDQ 90 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 28/56 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+ +G++Q + +++ + +S +E+G +P + +++ +D + Sbjct: 25 IAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRMPTLHRLQQLSDALDCSVDQLL 80 >gi|331678336|ref|ZP_08379011.1| repressor protein C2 [Escherichia coli H591] gi|331074796|gb|EGI46116.1| repressor protein C2 [Escherichia coli H591] Length = 210 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+K R Q E+A + ++ ENG R+ L + +S DW+ Sbjct: 3 ISSRVKSKRIQLGLNQAELAQRVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 61 Query: 92 DGEVIDRRYE 101 +G Sbjct: 62 NGTSDSNVRF 71 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I +R+KS R G++Q E + +G ++ E G+T + ++ +DW Sbjct: 1 MSISSRVKSKRIQLGLNQAELAQRVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDW 59 Query: 172 IYFG 175 + G Sbjct: 60 LLNG 63 >gi|294102131|ref|YP_003553989.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293617111|gb|ADE57265.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 226 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 28/78 (35%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I+ +RKA TQ+++A ++ + +E + L E+S ++ Sbjct: 4 GEEIRRLRKAKGWTQQQLADNVGVAKTTIVDWEKDRYFPTGENVHKLSRSLEVSIAYLMG 63 Query: 93 GEVIDRRYEDVTNKKRLD 110 + K D Sbjct: 64 ETDNPIQIGKDNIFKDYD 81 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 33/69 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++ +RK KG +Q + +G+ +T+ ++E+ R P + K+ + + + + Sbjct: 1 MISGEEIRRLRKAKGWTQQQLADNVGVAKTTIVDWEKDRYFPTGENVHKLSRSLEVSIAY 60 Query: 172 IYFGDEVIV 180 + + + Sbjct: 61 LMGETDNPI 69 >gi|226324082|ref|ZP_03799600.1| hypothetical protein COPCOM_01860 [Coprococcus comes ATCC 27758] gi|225207631|gb|EEG89985.1| hypothetical protein COPCOM_01860 [Coprococcus comes ATCC 27758] Length = 209 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+RIK R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + ++ A+G L+ + Sbjct: 64 VSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 99 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 12 SRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 70 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 71 GETDEYETDITDKRE 85 >gi|222147627|ref|YP_002548584.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734615|gb|ACM35578.1| transcriptional regulator [Agrobacterium vitis S4] Length = 469 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ +R TQ MA S +NL E +++ L L + Y++ + + Sbjct: 9 GPRVRRVRNGLGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDLEEL 66 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 G R++ +R G++Q + LG+ S L+ E+ + ++ K+ V K L Sbjct: 4 HKIFAGPRVRRVRNGLGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDL 63 Query: 170 DWI 172 + + Sbjct: 64 EEL 66 >gi|221213964|ref|ZP_03586937.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein) [Burkholderia multivorans CGD1] gi|221166141|gb|EED98614.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein) [Burkholderia multivorans CGD1] Length = 257 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G+R+K R +Q+ +A + + E+G S ++ L +S D Sbjct: 18 METLGSRVKAARLDAKLSQEALARQVGVSQGLIGQIESGKNQGS-KHLAALARALGVSAD 76 Query: 89 WIYDGEVIDRRYEDV 103 W+ G+ R Sbjct: 77 WLETGKGPRERAVGQ 91 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+K+ R D +SQ + +G+ + E G+ K + + DW+ G Sbjct: 23 SRVKAARLDAKLSQEALARQVGVSQGLIGQIESGKNQGS-KHLAALARALGVSADWLETG 81 Query: 176 D 176 Sbjct: 82 K 82 >gi|169333918|ref|ZP_02861111.1| hypothetical protein ANASTE_00304 [Anaerofustis stercorihominis DSM 17244] gi|169259483|gb|EDS73449.1| hypothetical protein ANASTE_00304 [Anaerofustis stercorihominis DSM 17244] Length = 155 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 3/92 (3%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +I RK + TQ ++A + ++ +E+ + L + +S D++ Sbjct: 12 GEKIAKARKNISLTQDQLAEVLDVSRQTISKWESDIAYPEAGKLKLLADTLNVSIDYLLK 71 Query: 93 GEVIDRRYEDVT---NKKRLDPYAIGARLKSI 121 EV + + ++ N +D + L Sbjct: 72 DEVEETKIPEMKQTSNGYEVDWSKLYPILNKY 103 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N G ++ RK+ ++Q + ++L + T+S +E PE + + Sbjct: 2 NNNGGVKMKTGEKIAKARKNISLTQDQLAEVLDVSRQTISKWESDIAYPEAGKLKLLADT 61 Query: 165 TKKHLDWIYFG--DEVIVPKSIKRAKGNQS 192 +D++ +E +P+ + + G + Sbjct: 62 LNVSIDYLLKDEVEETKIPEMKQTSNGYEV 91 >gi|167917945|ref|ZP_02505036.1| DNA-binding protein [Burkholderia pseudomallei BCC215] Length = 187 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 39/83 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEGR 64 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 ++ RA S ++ ++ Sbjct: 65 DRELITVTRASERTSMGRASSER 87 >gi|238794383|ref|ZP_04637994.1| DNA-binding phage-related protein [Yersinia intermedia ATCC 29909] gi|238726284|gb|EEQ17827.1| DNA-binding phage-related protein [Yersinia intermedia ATCC 29909] Length = 99 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 PF E L++ + Q K + T++KD RKA + TQ+++A + ++ Sbjct: 10 PFSEAKALLLEDKATLEAYNEIQIRKALMTQLKDARKALHLTQQDVAQKIGTQKQNISRM 69 Query: 65 ENGMCSTSIRYALYLRNEYE 84 ENG ++ Sbjct: 70 ENGKSVPNLATLSRYAAALG 89 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + A+ +LK RK ++Q + + +G +S E G+++P + + Sbjct: 29 NEIQIRKALMTQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLATLSRYAAAL 88 Query: 166 K 166 Sbjct: 89 G 89 >gi|329725199|gb|EGG61688.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 179 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 39/91 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+ N TQ+E+A + + ++ E+ S S+ L + + Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ + D Y G L + Sbjct: 62 FEDSENEKVLYKKEEQVIYDEYDEGYILNWL 92 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R+ K ++Q E + + +S E P ++ I +V Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + E K + Sbjct: 61 FFEDSENEKVLYKKEEQ 77 >gi|329116487|ref|ZP_08245204.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906892|gb|EGE53806.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 121 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +VG RIK +R++ N Q E+A +S ++ +E+G + + L Sbjct: 4 KEVFPEVGRRIKQLRESRNIEQLELAELMGYKSQSTISKWESGTNLPNGGKLVKLAKALN 63 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 + D I G I+R+ E + Sbjct: 64 TTTDNILFGSEIERKEETID 83 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +R+ + + Q+E +L+G ST+S +E G +P K+ + D I F Sbjct: 12 RRIKQLRESRNIEQLELAELMGYKSQSTISKWESGTNLPNGGKLVKLAKALNTTTDNILF 71 Query: 175 GDEVIVPKSIKRAKGNQSSK 194 G E+ + K + + Sbjct: 72 GSEIERKEETIDLKNTPAKR 91 >gi|293606756|ref|ZP_06689108.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553] gi|292814847|gb|EFF73976.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553] Length = 184 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ R++ +R+ + +++A +S ++ E G+ SI L L Y + + Sbjct: 3 DLPPRLRTLRRQQALSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVSQL 62 Query: 91 YDGEVIDRRY 100 + + Sbjct: 63 VGADDAAQDE 72 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL+++R+ + +S + + G+ S LS E+G + P I ++ + + Sbjct: 1 MNDLPPRLRTLRRQQALSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVS 60 Query: 171 WIYFGDEVIVPKSIKRAK 188 + D+ + + + Sbjct: 61 QLVGADDAAQDEVVSVVR 78 >gi|260433144|ref|ZP_05787115.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416972|gb|EEX10231.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 129 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 + + T PE + G R+ R+A TQ ++A ++ V +EN M Sbjct: 1 MSDETDWFGPEAATF----GDRLAGAREAAGMTQAQLARRLGVKKATVVGWENDMSEPRA 56 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + +S W+ GE D+ + + A L++IR + S Sbjct: 57 NKLSMMAGMLNVSIMWLLTGEGEGAGVPDLVEGDA-ELAPLVAELRAIRGEMRASSERLA 115 Query: 134 K 134 + Sbjct: 116 R 116 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L R+ GM+Q + + LG+ +T+ +E + P + + + W+ G+ Sbjct: 19 LAGAREAAGMTQAQLARRLGVKKATVVGWENDMSEPRANKLSMMAGMLNVSIMWLLTGE 77 >gi|240147526|ref|ZP_04746127.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257200275|gb|EEU98559.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 238 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY- 78 ++ + ++ K +G+RIK R N TQ +A S + +ENG + + L Sbjct: 27 AVSMKDKELRKLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEG 86 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 L +S +W+ GE + + ++ A+G L+ + Sbjct: 87 LSEALHVSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 128 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 2/115 (1%) Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 L + I+ + E V+ K + IG+R+K R + ++Q + Sbjct: 1 MLKINIALHIAISEKQCYNSYIPKKEAVSMKDKELRKLIGSRIKQRRLELNLTQPYVAEK 60 Query: 136 LGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDEVIVPKSIKRAKG 189 +G+ ST+ YE G K + + + ++W+ G+ I + Sbjct: 61 MGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-KGETDEYETDITDKRE 114 >gi|221199771|ref|ZP_03572814.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M] gi|221208624|ref|ZP_03581624.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2] gi|221171435|gb|EEE03882.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2] gi|221180010|gb|EEE12414.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M] Length = 189 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E +V R++ +R + +Q+E+A A ++L E G S S+ L Sbjct: 2 SETESMSTEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLEC 61 Query: 83 YEISFDWIYDGEVIDRR 99 +S + E+++ R Sbjct: 62 IPMSLAEFFTFELVESR 78 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 13 ERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 72 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 73 ELVESRSVVSRRDE 86 >gi|221215602|ref|ZP_03588565.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1] gi|221164590|gb|EED97073.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1] Length = 189 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E +V R++ +R + +Q+E+A A ++L E G S S+ L Sbjct: 2 SETESMSTEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLEC 61 Query: 83 YEISFDWIYDGEVIDRR 99 +S + E+++ R Sbjct: 62 IPMSLAEFFTFELVESR 78 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 13 ERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 72 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 73 ELVESRSVVSRRDE 86 >gi|206559002|ref|YP_002229762.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035039|emb|CAR50911.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] Length = 189 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E +V R++ +R + +Q+E+A A ++L E G S S+ L Sbjct: 2 SETESMSTEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLEC 61 Query: 83 YEISFDWIYDGEVIDRR 99 +S + E+++ R Sbjct: 62 IPMSLAEFFTFELVESR 78 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 13 ERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 72 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 73 ELVESRAVVSRRDE 86 >gi|196042506|ref|ZP_03109747.1| transcriptional regulator [Bacillus cereus NVH0597-99] gi|196026663|gb|EDX65329.1| transcriptional regulator [Bacillus cereus NVH0597-99] Length = 115 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 8/105 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG IK++RK+ + TQ++++ + +E + L + + S D + Sbjct: 5 VGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + E + ++ + G Q F K L Sbjct: 65 NFEDRKEDALLGLLFNDIQ--------RAYEELDGRQQGRFAKQL 101 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 28/62 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K++RK ++Q + + G+ + N+E R P+++ + + D + Sbjct: 7 QNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALLNF 66 Query: 176 DE 177 ++ Sbjct: 67 ED 68 >gi|241664279|ref|YP_002982639.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240866306|gb|ACS63967.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 117 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 32/91 (35%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + I+ +G I R A TQ+++A + ++ FE G + + Sbjct: 1 MATANRIQAVANRLGKAIARERMARELTQEQLAELLGVEQETISRFERGSTLPPLPRLIQ 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 L + + + + + E V K L Sbjct: 61 LADVFNVPLESLLRTTTGRPADEAVDISKML 91 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R + ++Q + +LLG+ T+S +E+G T+P + ++ V L+ + Sbjct: 16 KAIARERMARELTQEQLAELLGVEQETISRFERGSTLPPLPRLIQLADVFNVPLESLL 73 >gi|126698607|ref|YP_001087504.1| putative transcriptional regulator [Clostridium difficile 630] gi|254974574|ref|ZP_05271046.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255091964|ref|ZP_05321442.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100060|ref|ZP_05329037.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255305949|ref|ZP_05350121.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313699|ref|ZP_05355282.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516381|ref|ZP_05384057.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649481|ref|ZP_05396383.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655000|ref|ZP_05400409.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|260682647|ref|YP_003213932.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686247|ref|YP_003217380.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296449749|ref|ZP_06891519.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296877934|ref|ZP_06901953.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|115250044|emb|CAJ67864.1| putative transcriptional regulator, HTH [Clostridium difficile] gi|260208810|emb|CBA61711.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212263|emb|CBE02999.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296261473|gb|EFH08298.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296431002|gb|EFH16830.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 179 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R TQ+E+A + ++ EN + S SI + + + Sbjct: 2 DIGEKIKRLRTEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLREF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ +R + + + +LK + Sbjct: 62 FNEIDDERISFTKEDMFETEDEDLKYKLKWL 92 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R +K ++Q E + +S E T P I I ++ +L Sbjct: 1 MDIGEKIKRLRTEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLRE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + K + K K Sbjct: 61 FFNEIDDERISFTKEDMFETEDEDLKYKLK 90 >gi|78224438|ref|YP_386185.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195693|gb|ABB33460.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 187 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R A T + +A + ++ EN S I + +++ Sbjct: 5 NIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLF 64 Query: 91 YDGEVIDRRYE 101 + + + RYE Sbjct: 65 FSEDEEEYRYE 75 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 32/87 (36%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + Y IGA++K +R K ++ + G + +S E P I KI + Sbjct: 1 MSEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVK 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKK 195 + + DE + R + + Sbjct: 61 ISLFFSEDEEEYRYEVVRRGERKVIPR 87 >gi|254246992|ref|ZP_04940313.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184] gi|124871768|gb|EAY63484.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184] Length = 189 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E +V R++ +R + +Q+E+A A ++L E G S S+ L Sbjct: 2 SETESMSTEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLEC 61 Query: 83 YEISFDWIYDGEVIDRR 99 +S + E+++ R Sbjct: 62 IPMSLAEFFTFELVESR 78 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 13 ERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 72 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 73 ELVESRAVVSRRDE 86 >gi|329577865|gb|EGG59286.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 131 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 115 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD 176 +DW+ +GD Sbjct: 61 DTTVDWLLYGD 71 >gi|313112940|ref|ZP_07798585.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624749|gb|EFQ08059.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 220 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K+ G + +R+ N TQ E+A + + AV+ +E G+ I L + ++ Sbjct: 4 KEFGAFLAQVRRERNMTQAELAQQLHVTDKAVSRWERGIGLPDINMLEPLADVLGLTLAD 63 Query: 90 IYDGEVIDRRYEDVT 104 + ++ + Sbjct: 64 LMHCHDSRQKDDTPP 78 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D GA L +R+++ M+Q E + L + + +S +E+G +P+I + V Sbjct: 1 MDAKEFGAFLAQVRRERNMTQAELAQQLHVTDKAVSRWERGIGLPDINMLEPLADVLGLT 60 Query: 169 LDWIY 173 L + Sbjct: 61 LADLM 65 >gi|291551015|emb|CBL27277.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 209 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+RIK R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + ++ A+G L+ + Sbjct: 64 VSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 99 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 12 SRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 70 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 71 GETDEYETDITDKRE 85 >gi|271964073|ref|YP_003338269.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507248|gb|ACZ85526.1| transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 64 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 24/57 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++++R + +Q+ + +N E G S+ A+ L + + + ++ Sbjct: 5 VRELRGSAGLSQQALGERLGVSRQTINAIEQGRYDPSLPLAIRLARFFGRTVEEVFH 61 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R G+SQ G+ LG+ T++ EQGR P + A ++ + + ++ ++ Sbjct: 3 NDVRELRGSAGLSQQALGERLGVSRQTINAIEQGRYDPSLPLAIRLARFFGRTVEEVFHC 62 Query: 176 DE 177 D+ Sbjct: 63 DD 64 >gi|227552156|ref|ZP_03982205.1| transcriptional regulator [Enterococcus faecium TX1330] gi|227178738|gb|EEI59710.1| transcriptional regulator [Enterococcus faecium TX1330] Length = 213 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 33/76 (43%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ Sbjct: 31 EEIMEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVT 90 Query: 87 FDWIYDGEVIDRRYED 102 + + E + + Sbjct: 91 PEEFFHQEAANLQVVY 106 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 34 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 93 Query: 172 IY 173 + Sbjct: 94 FF 95 >gi|160945398|ref|ZP_02092624.1| hypothetical protein FAEPRAM212_02920 [Faecalibacterium prausnitzii M21/2] gi|158443129|gb|EDP20134.1| hypothetical protein FAEPRAM212_02920 [Faecalibacterium prausnitzii M21/2] gi|295105418|emb|CBL02962.1| transcriptional regulator, XRE family [Faecalibacterium prausnitzii SL3/3] Length = 74 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ + QK++A + + +E G + L Y S D+I Sbjct: 3 QRIRDLREDRDLLQKDVAAYLKCTQVCYSNYETGKRDIPTEVLIQLAGLYHTSTDYILGL 62 Query: 94 EVIDRRYED 102 Sbjct: 63 TDDSAPPIP 71 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 31/74 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D+ + Q + L SNYE G+ + ++ + D+I Sbjct: 1 MYQRIRDLREDRDLLQKDVAAYLKCTQVCYSNYETGKRDIPTEVLIQLAGLYHTSTDYIL 60 Query: 174 FGDEVIVPKSIKRA 187 + P ++A Sbjct: 61 GLTDDSAPPIPRKA 74 >gi|39998387|ref|NP_954338.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39985333|gb|AAR36688.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298507328|gb|ADI86051.1| transcriptional regulator with cupin-like beta-barrel domain, putative [Geobacter sulfurreducens KN400] Length = 187 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R A T + +A + ++ EN S I + +++ Sbjct: 5 NIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLF 64 Query: 91 YDGEVIDRRYE 101 + + + RYE Sbjct: 65 FSEDEEEYRYE 75 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 32/87 (36%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + Y IGA++K +R K ++ + G + +S E P I KI + Sbjct: 1 MTEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVK 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKK 195 + + DE + R + + Sbjct: 61 ISLFFSEDEEEYRYEVVRRGERKVIPR 87 >gi|310815538|ref|YP_003963502.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] gi|308754273|gb|ADO42202.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] Length = 214 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G+RI+++RK N T ++++ A ++ E S+ L ++ D Sbjct: 30 GSRIRELRKKNGLTLQQLSDRAGLSVGFLSQLERDKAVPSLGSLARLAQVLQVDIDHFI 88 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G+R++ +RK G++ + G+ LS E+ + +P + ++ QV + + Sbjct: 25 DRPVYGSRIRELRKKNGLTLQQLSDRAGLSVGFLSQLERDKAVPSLGSLARLAQVLQVDI 84 Query: 170 DWIY 173 D Sbjct: 85 DHFI 88 >gi|322434732|ref|YP_004216944.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321162459|gb|ADW68164.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 177 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V T ++D+R N +Q+++A N + ++ ENG ++ L E+ + Sbjct: 64 QVATAVRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALEVDISAL 123 Query: 91 YDGEVID 97 Sbjct: 124 LRDAPTR 130 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 27/58 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R + +SQ + + +P + +S E G+ +P + ++ + + + + Sbjct: 69 VRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALEVDISALLRD 126 >gi|194017594|ref|ZP_03056205.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194010866|gb|EDW20437.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 71 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RIK +R + TQK++A V ENG S S++ A + +E+ + Sbjct: 2 EIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYDV 61 Query: 91 YDGEVIDRRY 100 + + Sbjct: 62 FQEVDKEEPQ 71 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+K +R ++ +Q + + LG+ T++ E G+ +K A +I + + L Sbjct: 1 MEIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYD 60 Query: 172 IYFGDEVIVPK 182 ++ + P+ Sbjct: 61 VFQEVDKEEPQ 71 >gi|153971519|ref|YP_001393059.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|153971715|ref|YP_001393216.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|152955041|emb|CAL25393.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|152955200|emb|CAL25550.1| DNA-binding protein RDGA [Vibrio vulnificus] Length = 208 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query: 32 VGTRIKDIRKA-NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R+ + ++KE+ +SAVN +ENG+ S + + L + +++W+ Sbjct: 3 LGGRIKKLREESLHISKKELGAILGVSQSAVNQWENGVNYPSQKRLIELSRVLKTTYEWL 62 Query: 91 YDGEV---IDRRYEDVTNKKRLDPYAIGARL 118 +G D ++ + ++ A G + Sbjct: 63 VNGTTSSHNDGSEYEIPFYEHVNCSAGGGFI 93 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 118 LKSIRKD-KGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +R++ +S+ E G +LG+ S ++ +E G P K ++ +V K +W+ G Sbjct: 7 IKKLREESLHISKKELGAILGVSQSAVNQWENGVNYPSQKRLIELSRVLKTTYEWLVNG 65 >gi|126699511|ref|YP_001088408.1| putative phage repressor [Clostridium difficile 630] gi|255101028|ref|ZP_05330005.1| putative phage repressor [Clostridium difficile QCD-63q42] gi|115250948|emb|CAJ68776.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 169 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 2 LSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Query: 92 DGEVIDRRYEDVT 104 +++ +++ Sbjct: 62 GETIVESEVDNLK 74 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKSIKRAK 188 E IV + K Sbjct: 61 LG--ETIVESEVDNLK 74 >gi|38141545|emb|CAE53432.1| putative transcriptional regulator [Bacillus cereus] Length = 70 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R TQ+ +A + L E G S S+ AL L ++++ + ++ Sbjct: 5 NRVRELRARFRWTQQGLADAIGVTRQTIGLIEKGDYSPSVTMALKLAAVFQVTVEEVFYL 64 Query: 94 EVIDR 98 + +R Sbjct: 65 KGEER 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +R +Q +G+ T+ E+G P + A K+ V + ++ Sbjct: 1 MILENRVRELRARFRWTQQGLADAIGVTRQTIGLIEKGDYSPSVTMALKLAAVFQVTVEE 60 Query: 172 IYF--GDE 177 +++ G+E Sbjct: 61 VFYLKGEE 68 >gi|325679879|ref|ZP_08159448.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108317|gb|EGC02564.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 119 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + ++ +G RIK RK + +Q E+A A+ ++ E G + + + Sbjct: 2 SDTKERLIPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEA 61 Query: 83 YEISFDWIYDGEVIDRR 99 +IS D + ++ + Sbjct: 62 LQISTDKLLRPDIPETT 78 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K RK+ +SQ E + + LS E G++ + +I + + D + Sbjct: 13 ERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQISTDKLLRP 72 Query: 176 D 176 D Sbjct: 73 D 73 >gi|228924266|ref|ZP_04087520.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835373|gb|EEM80760.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 105 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 11/109 (10%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G I+D+RK TQKE+A ES + ++E + + + +++S D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYE---RQPDYNTLIRIADYFKVSTD 57 Query: 89 WIYDGEVIDRRYEDVT------NKKRLDPYAIGARLKSIRKDKGMSQIE 131 ++ + R + + N +L P LK R K + Q E Sbjct: 58 FLLGRDFDVERKRNDSELDQWLNDIKLAPSQKREELK--RFWKFIMQEE 104 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +RK KG++Q E + L + ST+ YE+ P+ +I K D Sbjct: 1 MKTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERQ---PDYNTLIRIADYFKVSTD 57 Query: 171 WIYFGDEVIVPKS 183 ++ D + K Sbjct: 58 FLLGRDFDVERKR 70 >gi|153852685|ref|ZP_01994122.1| hypothetical protein DORLON_00104 [Dorea longicatena DSM 13814] gi|149754327|gb|EDM64258.1| hypothetical protein DORLON_00104 [Dorea longicatena DSM 13814] Length = 83 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R Q EM A ++ E G S S+ AL L E++ + I+ Sbjct: 13 NRLKEYRSRLGVNQTEMGKLAGVSRQTISQIERGDYSPSVTLALKLAKICEVNVEDIFIY 72 Query: 94 EVIDRRYEDVT 104 E Sbjct: 73 EEEINDEGKEK 83 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 40/76 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK R G++Q E GKL G+ T+S E+G P + A K+ ++ + +++ Sbjct: 8 HLPLLNRLKEYRSRLGVNQTEMGKLAGVSRQTISQIERGDYSPSVTLALKLAKICEVNVE 67 Query: 171 WIYFGDEVIVPKSIKR 186 I+ +E I + ++ Sbjct: 68 DIFIYEEEINDEGKEK 83 >gi|71278291|ref|YP_271323.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144031|gb|AAZ24504.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] Length = 180 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R+K++R+ +Q+E+A S +++ E S SI + ++ Sbjct: 2 DVGKRLKEVREMYGLSQRELAKRVGLTNSTISMIERDAVSPSISSLKKILEGVSLTVTEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 + E+ +D Sbjct: 62 FTLEIPTESQVVFKKDTLVD 81 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G RLK +R+ G+SQ E K +G+ NST+S E+ P I +KI + + Sbjct: 1 MDVGKRLKEVREMYGLSQRELAKRVGLTNSTISMIERDAVSPSISSLKKILEGVSLTVTE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + + + Sbjct: 61 FFTLEIPTESQVVFKKD 77 >gi|82750708|ref|YP_416449.1| transcriptional regulator [Staphylococcus aureus RF122] gi|82656239|emb|CAI80652.1| probable transcriptional regulator [Staphylococcus aureus RF122] Length = 179 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+ N TQ+E+A + + ++ E+ S S+ L + + Sbjct: 2 NIGNKIKNLRRIKNLTQEELAKRTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + D Y G L + Sbjct: 62 FKDSENENVLYKKEEQVIYDEYDEGYILNWL 92 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R+ K ++Q E K + +S E P ++ I +V Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAKRTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 172 IYFGDE 177 + E Sbjct: 61 FFKDSE 66 >gi|325288089|ref|YP_004263879.1| helix-turn-helix domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323543|gb|ADY31008.1| helix-turn-helix domain protein [Cellulophaga lytica DSM 7489] Length = 257 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + T I+ +R TQ+ +AI + V+ +E G + +I + L + +++ D + Sbjct: 4 IATNIRHLRSLKGVTQQSLAIDLGITRARVSSYEEGRSAPTIETLIQLSDYFKLPIDVLV 63 Query: 92 DGEVIDRRYEDVTN 105 ++ Sbjct: 64 RNDLSKATDASFIE 77 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I ++ +R KG++Q LG+ + +S+YE+GR+ P I+ ++ K +D Sbjct: 1 MIFIATNIRHLRSLKGVTQQSLAIDLGITRARVSSYEEGRSAPTIETLIQLSDYFKLPID 60 Query: 171 WIYFGD 176 + D Sbjct: 61 VLVRND 66 >gi|257886679|ref|ZP_05666332.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,141,733] gi|257895254|ref|ZP_05674907.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|257897876|ref|ZP_05677529.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com15] gi|257822733|gb|EEV49665.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,141,733] gi|257831819|gb|EEV58240.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|257835788|gb|EEV60862.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com15] Length = 180 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 32/72 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEF 61 Query: 91 YDGEVIDRRYED 102 + E + + Sbjct: 62 FHQEAANLQVVY 73 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|226357088|ref|YP_002786828.1| XRE family transcriptional regulator [Deinococcus deserti VCD115] gi|226319078|gb|ACO47074.1| putative transcriptional regulator, XRE family [Deinococcus deserti VCD115] Length = 129 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R++++R K++A A ++ E G + S+ L Y I+ + Sbjct: 2 KLHERLRELRSERGLRLKDVAEVAQISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDL 61 Query: 91 YDG 93 +G Sbjct: 62 LEG 64 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL+ +R ++G+ + ++ + LS+ E+GRT P ++ + + + Sbjct: 1 MKLHERLRELRSERGLRLKDVAEVAQISVPYLSDLERGRTNPSLETLQTLAGAYNITVHD 60 Query: 172 IYFGDE 177 + G E Sbjct: 61 LLEGVE 66 >gi|255655872|ref|ZP_05401281.1| putative phage repressor [Clostridium difficile QCD-23m63] Length = 169 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 2 LSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Query: 92 DGEVIDRRYEDVT 104 +++ +++ Sbjct: 62 GETIVELEVDNLK 74 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKSIKRAK 188 E IV + K Sbjct: 61 LG--ETIVELEVDNLK 74 >gi|298694333|gb|ADI97555.1| probable transcriptional regulator [Staphylococcus aureus subsp. aureus ED133] Length = 179 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+ N TQ+E+A + + ++ E+ S S+ L + + Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + D Y G L + Sbjct: 62 FKDSENEKVLYKKEEQVIYDEYDEGYILNWL 92 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R+ K ++Q E + + +S E P ++ I +V Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + E K + Sbjct: 61 FFKDSENEKVLYKKEEQ 77 >gi|291531440|emb|CBK97025.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 108 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI RK Q E+ + ++ E G + S+ + L + + D Sbjct: 5 YTALGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLNATPD 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + G Y++ K RL Sbjct: 65 YFLLGTASAELYDNDIASKITPMTDEHKRL 94 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++D A+G R+ RK+ G+ Q E +L+ + LSN E GR+ P ++ + V Sbjct: 1 MKIDYTALGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLN 60 Query: 167 KHLDWIYFG 175 D+ G Sbjct: 61 ATPDYFLLG 69 >gi|209518698|ref|ZP_03267515.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209500897|gb|EEA00936.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 200 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 27/65 (41%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G I+++R+++ T ++A A ++ EN S + + +S Sbjct: 11 LERYLGATIRELRQSHGLTIAQVAEQAGISRGMLSKIENAQTSAGLDVLHRIAMALGVSM 70 Query: 88 DWIYD 92 ++ Sbjct: 71 SALFR 75 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A ++ +R+ G++ + + G+ LS E +T + +I + ++ Sbjct: 17 ATIRELRQSHGLTIAQVAEQAGISRGMLSKIENAQTSAGLDVLHRIAMALGVSMSALFRN 76 Query: 176 DEVIV--PKSIKRAKGNQSSKK 195 +V + +K+ G + +K Sbjct: 77 FDVPHGGAQLVKKGAGMEVVRK 98 >gi|183597550|ref|ZP_02959043.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] gi|188023147|gb|EDU61187.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] Length = 132 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +Q +G +I IRKA T K++ N + ++ +ENG+C + + L + Sbjct: 26 KQQLSLIIGRQIYFIRKARCMTGKQLGEQLNVSQQQISRYENGVCHIDVDTLIRLLYILD 85 Query: 85 ISFDWIY 91 + D + Sbjct: 86 MPIDQFF 92 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 8/94 (8%) Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 + + D K+ IG ++ IRK + M+ + G+ L + Sbjct: 7 CEYFNVIGD--------GENLYKNLTSKQQLSLIIGRQIYFIRKARCMTGKQLGEQLNVS 58 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +S YE G ++ ++ + +D + Sbjct: 59 QQQISRYENGVCHIDVDTLIRLLYILDMPIDQFF 92 >gi|169826912|ref|YP_001697070.1| hypothetical protein Bsph_1332 [Lysinibacillus sphaericus C3-41] gi|168991400|gb|ACA38940.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 180 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK +R TQ+E+ + + ++ E + S SI + + Sbjct: 2 QIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKEF 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 +D E +++ + + Sbjct: 62 FDDESPEQKVVYTEEDQSI 80 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA++K++R KG++Q E G+ + +S E+ P I+ I +V Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +F DE K + + +K + Sbjct: 61 -FFDDESPEQKVVYTEEDQSIFTDEEKKYE 89 >gi|22536402|ref|NP_687253.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22533229|gb|AAM99125.1|AE014201_23 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] Length = 158 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQ ++A N +S +ENG S SI + L + + +S ++ Sbjct: 3 NRLKELRKDKGLTQADLAKVINTNQSQYGKYENGKTSLSIENSKILADFFGVSIPYLLGL 62 Query: 94 EVIDRRYEDVTNKKRL 109 + + L Sbjct: 63 DNNSKIANSTIKDTNL 78 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +RKDKG++Q + K++ S YE G+T I+ ++ + + ++ Sbjct: 1 MYNRLKELRKDKGLTQADLAKVINTNQSQYGKYENGKTSLSIENSKILADFFGVSIPYLL 60 Query: 174 FGDEV--IVPKSIKRAKGNQSSKKSKKD 199 D I +IK ++ KKD Sbjct: 61 GLDNNSKIANSTIKDTNLLSFFEQVKKD 88 >gi|315302804|ref|ZP_07873567.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] gi|313628823|gb|EFR97193.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] Length = 140 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +R+ N TQ+++A N ++ +E L Y +S +I Sbjct: 2 FGERLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYIL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 +E +R + + Sbjct: 62 GETDKKHYWELNDEDERSIQKDLQKMI 88 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 37/86 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL+S+R++K ++Q + L + LSNYE+ + P+ + +K+ + +I Sbjct: 1 MFGERLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYI 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + K +K Sbjct: 61 LGETDKKHYWELNDEDERSIQKDLQK 86 >gi|309811507|ref|ZP_07705289.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185] gi|308434558|gb|EFP58408.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185] Length = 512 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ +T ++A SA++L ENG + L ++ + Sbjct: 43 IGRRLRHVRQGAERTLGDVAAAVGMSPSALSLIENGKREPRLSVLTSLAEVLDVPLADLL 102 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 RR +R + L Sbjct: 103 ATAPPSRRAALEIRLERAQRAEQYSAL 129 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 29/83 (34%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + D IG RL+ +R+ + + +GM S LS E G+ Sbjct: 20 LSRPHVSTETATRPERAAPDALTIGRRLRHVRQGAERTLGDVAAAVGMSPSALSLIENGK 79 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 P + + +V L + Sbjct: 80 REPRLSVLTSLAEVLDVPLADLL 102 >gi|182418942|ref|ZP_02950199.1| transcriptional regulator, XRE family [Clostridium butyricum 5521] gi|237667576|ref|ZP_04527560.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377225|gb|EDT74793.1| transcriptional regulator, XRE family [Clostridium butyricum 5521] gi|237655924|gb|EEP53480.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 92 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K +R Q+++A N S +E G I+ + L Y++S D++ Sbjct: 4 DRLKYLRNEIELKQEDIADKLNVARSTYGNWELGRTEPDIKALIKLARFYKVSLDYL 60 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK +R + + Q + L + ST N+E GRT P+IK K+ + K LD++ Sbjct: 1 MLKDRLKYLRNEIELKQEDIADKLNVARSTYGNWELGRTEPDIKALIKLARFYKVSLDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKK 195 G+ + ++ + + K Sbjct: 61 -CGNTDVKEMYVRDKRKSMYISK 82 >gi|167835768|ref|ZP_02462651.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 187 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSESR 64 Query: 178 VIVPKSIKRAKGNQS 192 ++ RA S Sbjct: 65 DRELITVTRASERTS 79 >gi|30020775|ref|NP_832406.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229127990|ref|ZP_04256973.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|29896327|gb|AAP09607.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228655457|gb|EEL11312.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] Length = 119 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K VG I+ +RK TQ+E+A N ++ + E G + S+ + E Sbjct: 1 MSDFLKLVGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLE 60 Query: 85 ISFDWIYD 92 +S D + + Sbjct: 61 VSPDEVLN 68 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +RK +G++Q E + + + + + E+G + +KI + D + Sbjct: 10 ENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPDEVLNF 69 Query: 176 DEVIVPKSIKRAKG 189 V + + +R + Sbjct: 70 SNVNLIDNPQREES 83 >gi|291485886|dbj|BAI86961.1| hypothetical protein BSNT_05082 [Bacillus subtilis subsp. natto BEST195] Length = 132 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +K +R KT E A +S ++ EN S++ + + + + + Sbjct: 4 KKIGHAVKRLRTEKKKTVDEAAKEIGISQSYLSRIENNTQVPSLKVIEKIADYFNVHKSY 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ E + D K LK + Sbjct: 64 LFFDEESLDSFTDPEKKLLAQKSITVDDLKKL 95 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +K +R +K + E K +G+ S LS E +P +K KI H Sbjct: 1 MESKKIGHAVKRLRTEKKKTVDEAAKEIGISQSYLSRIENNTQVPSLKVIEKIADYFNVH 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +++F +E + + K + D K N Sbjct: 61 KSYLFFDEESLDSFTDPEKKLLAQKSITVDDLKKLN 96 >gi|228921104|ref|ZP_04084438.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229190489|ref|ZP_04317487.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228592997|gb|EEK50818.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228838550|gb|EEM83857.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 186 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + S Sbjct: 66 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNKQA---NTTES 122 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 S+ ++ I K +V L+ ++ GD V +P ++K N+S + + Sbjct: 123 HYSHEDKEE----IAVIMK-GEVY-VELEGKEYFLEEGDVVRIPPNVKHRFLNKSDESN 175 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF + G+ S +S E+G P + I + L ++ D + Sbjct: 13 YRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFIND-IDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENND 90 >gi|220929667|ref|YP_002506576.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999995|gb|ACL76596.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 117 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYEISFDWI 90 G R++++R+ + TQ E+ N + +E L + + + +S D++ Sbjct: 3 FGDRLRELREERDITQNELGKSINVSGRVIGYYEANDRFPRDENLLKTIADYFNVSVDYL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +++ + ++ L Sbjct: 63 LGRTENRQMSDEIVTESKIPYNLDLKGL 90 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLD 170 G RL+ +R+++ ++Q E GK + + + YE P + K I +D Sbjct: 1 MRFGDRLRELREERDITQNELGKSINVSGRVIGYYEANDRFPRDENLLKTIADYFNVSVD 60 Query: 171 WIYFGDE 177 ++ E Sbjct: 61 YLLGRTE 67 >gi|94970073|ref|YP_592121.1| transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552123|gb|ABF42047.1| transcriptional regulator, XRE family with cupin sensor domain [Candidatus Koribacter versatilis Ellin345] Length = 201 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 28/85 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R E+ + ++ E G ++ L + + + D+ + Sbjct: 21 IGEKLRALRLKKKLGLVELGKHTGLSPALLSKLERGKLFPTLPTLLRIALVFSVGLDYFF 80 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 E V +RL Sbjct: 81 ADESRRHVVSVVRKDERLRFPERPN 105 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 39/82 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 L PY IG +L+++R K + +E GK G+ + LS E+G+ P + +I V Sbjct: 16 LKPYRIGEKLRALRLKKKLGLVELGKHTGLSPALLSKLERGKLFPTLPTLLRIALVFSVG 75 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 LD+ + + S+ R Sbjct: 76 LDYFFADESRRHVVSVVRKDER 97 >gi|15924088|ref|NP_371622.1| Cro/CI family transcriptional regulator protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926683|ref|NP_374216.1| hypothetical protein SA0949 [Staphylococcus aureus subsp. aureus N315] gi|21282710|ref|NP_645798.1| hypothetical protein MW0981 [Staphylococcus aureus subsp. aureus MW2] gi|49485936|ref|YP_043157.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651707|ref|YP_185971.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus COL] gi|87161040|ref|YP_493696.1| hypothetical protein SAUSA300_0998 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194797|ref|YP_499594.1| hypothetical protein SAOUHSC_01045 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267591|ref|YP_001246534.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393646|ref|YP_001316321.1| hypothetical protein SaurJH1_1180 [Staphylococcus aureus subsp. aureus JH1] gi|151221176|ref|YP_001331998.1| hypothetical protein NWMN_0964 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979421|ref|YP_001441680.1| hypothetical protein SAHV_1090 [Staphylococcus aureus subsp. aureus Mu3] gi|161509281|ref|YP_001574940.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140502|ref|ZP_03564995.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316351|ref|ZP_04839564.1| hypothetical protein SauraC_09456 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731709|ref|ZP_04865874.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733667|ref|ZP_04867832.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255005885|ref|ZP_05144486.2| hypothetical protein SauraM_05430 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795171|ref|ZP_05644150.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407120|ref|ZP_05680269.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421788|ref|ZP_05684709.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|258423598|ref|ZP_05686488.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258436152|ref|ZP_05689135.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443359|ref|ZP_05691702.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258444969|ref|ZP_05693286.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258449856|ref|ZP_05697954.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258451955|ref|ZP_05699971.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258454955|ref|ZP_05702918.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A5937] gi|262048684|ref|ZP_06021566.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30] gi|262052206|ref|ZP_06024412.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3] gi|269202709|ref|YP_003281978.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282894125|ref|ZP_06302356.1| DNA-binding protein [Staphylococcus aureus A8117] gi|282925282|ref|ZP_06332939.1| DNA-binding protein [Staphylococcus aureus A9765] gi|282928620|ref|ZP_06336217.1| DNA-binding protein [Staphylococcus aureus A10102] gi|284024023|ref|ZP_06378421.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294848087|ref|ZP_06788834.1| DNA-binding protein [Staphylococcus aureus A9754] gi|295405902|ref|ZP_06815711.1| DNA-binding protein [Staphylococcus aureus A8819] gi|296276499|ref|ZP_06859006.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208264|ref|ZP_06924694.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246372|ref|ZP_06930216.1| DNA-binding protein [Staphylococcus aureus A8796] gi|300912341|ref|ZP_07129784.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381344|ref|ZP_07363997.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700899|dbj|BAB42195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246868|dbj|BAB57260.1| similar to transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus Mu50] gi|21204148|dbj|BAB94846.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244379|emb|CAG42807.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285893|gb|AAW37987.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus COL] gi|87127014|gb|ABD21528.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202355|gb|ABD30165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740660|gb|ABQ48958.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149946098|gb|ABR52034.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373976|dbj|BAF67236.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721556|dbj|BAF77973.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368090|gb|ABX29061.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724523|gb|EES93252.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728367|gb|EES97096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257789143|gb|EEV27483.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257841275|gb|EEV65720.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842121|gb|EEV66549.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|257846299|gb|EEV70323.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257848841|gb|EEV72826.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851449|gb|EEV75388.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257856091|gb|EEV79009.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257856776|gb|EEV79679.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257860170|gb|EEV83002.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257862835|gb|EEV85600.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A5937] gi|259159877|gb|EEW44915.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3] gi|259163140|gb|EEW47700.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30] gi|262074999|gb|ACY10972.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|269940593|emb|CBI48972.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282589659|gb|EFB94745.1| DNA-binding protein [Staphylococcus aureus A10102] gi|282592558|gb|EFB97568.1| DNA-binding protein [Staphylococcus aureus A9765] gi|282763611|gb|EFC03740.1| DNA-binding protein [Staphylococcus aureus A8117] gi|285816779|gb|ADC37266.1| putative DNA-binding protein [Staphylococcus aureus 04-02981] gi|294824887|gb|EFG41309.1| DNA-binding protein [Staphylococcus aureus A9754] gi|294969337|gb|EFG45357.1| DNA-binding protein [Staphylococcus aureus A8819] gi|296887003|gb|EFH25906.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176738|gb|EFH35998.1| DNA-binding protein [Staphylococcus aureus A8796] gi|300886587|gb|EFK81789.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302332708|gb|ADL22901.1| transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus JKD6159] gi|302750922|gb|ADL65099.1| transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340327|gb|EFM06268.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829492|emb|CBX34334.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130316|gb|EFT86303.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315196128|gb|EFU26485.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320141086|gb|EFW32933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143143|gb|EFW34933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440647|gb|EGA98357.1| transcriptional regulator [Staphylococcus aureus O11] gi|323441674|gb|EGA99320.1| transcriptional regulator [Staphylococcus aureus O46] gi|329313766|gb|AEB88179.1| Transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus T0131] gi|329730799|gb|EGG67178.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 179 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+ N TQ+E+A + + ++ E+ S S+ L + + Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + D Y G L + Sbjct: 62 FKDSENEKVLYKKEEQVIYDEYDEGYILNWL 92 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R+ K ++Q E + + +S E P ++ I +V Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + E K + Sbjct: 61 FFKDSENEKVLYKKEEQ 77 >gi|325679534|ref|ZP_08159114.1| peptidase S24-like protein [Ruminococcus albus 8] gi|324108821|gb|EGC03057.1| peptidase S24-like protein [Ruminococcus albus 8] Length = 228 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEI 85 + ++G RIK R+ TQ+ + +S + +E G + + + Sbjct: 2 EKNVEIGKRIKKRREELGMTQEALGSPLGFNKSTIQRYEAGKVAKIKLPIIEAMAQRLNV 61 Query: 86 SFDWI 90 S +W+ Sbjct: 62 SPEWL 66 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWI 172 R+K R++ GM+Q G LG ST+ YE G+ ++ + Q +W+ Sbjct: 9 KRIKKRREELGMTQEALGSPLGFNKSTIQRYEAGKVAKIKLPIIEAMAQRLNVSPEWL 66 >gi|228961481|ref|ZP_04123092.1| Prophage Lp3 protein 2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798195|gb|EEM45197.1| Prophage Lp3 protein 2 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 206 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R+ +QKE+A N + AV+ +E G L + + +++ + Sbjct: 2 KRIKIARQRKGVSQKELAEKLNMTQQAVSYYEKGSRVPDENILLEISRILTVPVEYLTEE 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ I +K I Sbjct: 62 TNDPEGWDLWEKHTGYSVEQIQNEIKRI 89 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R+ KG+SQ E + L M +S YE+G +P+ +I ++ ++++ Sbjct: 1 MKRIKIARQRKGVSQKELAEKLNMTQQAVSYYEKGSRVPDENILLEISRILTVPVEYL-- 58 Query: 175 GDEVIVPK 182 +E P+ Sbjct: 59 TEETNDPE 66 >gi|224825809|ref|ZP_03698913.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224602033|gb|EEG08212.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 119 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ RKA +TQK +A +S+V+ +E G + + ISF+W+ Sbjct: 3 IGFRIKEARKARRRTQKWLADEVGVKQSSVSQWEMGETEPTTANCSSVAQALRISFEWLT 62 Query: 92 DGEVIDRRYE 101 G Sbjct: 63 TGRGEMDVTY 72 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-- 175 +K RK + +Q +G+ S++S +E G T P + Q + +W+ G Sbjct: 7 IKEARKARRRTQKWLADEVGVKQSSVSQWEMGETEPTTANCSSVAQALRISFEWLTTGRG 66 Query: 176 --DEVIVPKSIKRAKGNQSSKKSKKD 199 D + A+ Q KK+ Sbjct: 67 EMDVTYASAVVHVAEPGQDLDDDKKE 92 >gi|222106747|ref|YP_002547538.1| transcriptional regulator [Agrobacterium vitis S4] gi|221737926|gb|ACM38822.1| transcriptional regulator [Agrobacterium vitis S4] Length = 219 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 18/137 (13%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + P +G ++ RK T ++A ++ ENG S S+ Sbjct: 18 QDPHAVREPRANNLEMAIGHEVRTFRKKLGITVADLATATGMSVGMLSKIENGNISASLG 77 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 L + + G R V + G+ G Sbjct: 78 TLQSLSKALGVPMTAFFKGYEEPRSASFVKAGE------------------GVHLERRGT 119 Query: 135 LLGMPNSTLSNYEQGRT 151 G S L + E + Sbjct: 120 RAGHHYSLLGHIENNTS 136 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG +++ RK G++ + GM LS E G + + + + + Sbjct: 33 MAIGHEVRTFRKKLGITVADLATATGMSVGMLSKIENGNISASLGTLQSLSKALGVPMTA 92 Query: 172 IYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + G +E +K +G ++ + Sbjct: 93 FFKGYEEPRSASFVKAGEGVHLERRGTRAGHH 124 >gi|254418301|ref|ZP_05032025.1| hypothetical protein BBAL3_611 [Brevundimonas sp. BAL3] gi|196184478|gb|EDX79454.1| hypothetical protein BBAL3_611 [Brevundimonas sp. BAL3] Length = 67 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ +LLG+ T++ E GR P + A KI ++ + ++ I+ Sbjct: 1 MNNRLKVLRAERDWSQAHLAELLGVSRQTVNALETGRYDPSLPLAFKIARIFDQPIESIF 60 Query: 174 FGDE 177 +E Sbjct: 61 SEEE 64 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q +A VN E G S+ A + ++ + I+ Sbjct: 3 NRLKVLRAERDWSQAHLAELLGVSRQTVNALETGRYDPSLPLAFKIARIFDQPIESIFSE 62 Query: 94 EVID 97 E + Sbjct: 63 EENN 66 >gi|194016129|ref|ZP_03054744.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012484|gb|EDW22051.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 187 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +R + ++MA ++ + E G + +I + N ++SF + Sbjct: 8 ISKNVRLLRDQKKLSLEKMAELTGVSKTMIGQIERGESTPTITTLWKIANGLKVSFSELI 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + + + L Sbjct: 68 HAPQPEIKVVRNEDAQIL 85 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R K +S + +L G+ + + E+G + P I KI K + Sbjct: 10 KNVRLLRDQKKLSLEKMAELTGVSKTMIGQIERGESTPTITTLWKIANGLKVSFSELI 67 >gi|153009334|ref|YP_001370549.1| hypothetical protein Oant_2004 [Ochrobactrum anthropi ATCC 49188] gi|151561222|gb|ABS14720.1| protein of unknown function DUF955 [Ochrobactrum anthropi ATCC 49188] Length = 470 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 30/90 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 8 IGRKIREIREQHKATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 G+ L+ + Sbjct: 68 LGDDDRLLSAVSEALADPVFDNYKPNLQEL 97 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHKATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|310641032|ref|YP_003945790.1| DNA-binding protein [Paenibacillus polymyxa SC2] gi|309245982|gb|ADO55549.1| DNA-binding protein [Paenibacillus polymyxa SC2] Length = 182 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 24/65 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+ + IRK + ++A + + E G + ++ + N +SF Sbjct: 8 IGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGRSNPTVTTLWKIANGLHVSFSTFL 67 Query: 92 DGEVI 96 + Sbjct: 68 KEDPP 72 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y IG+ L IRK +G+S + +L G+ L+ E+GR+ P + KI Sbjct: 5 QYIIGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGRSNPTVTTLWKIANGLHVSFS 64 Query: 171 WIYFGDEVIVPKSIKRAK 188 D + K I+RA Sbjct: 65 TFLKEDPPQITK-IRRAD 81 >gi|293571244|ref|ZP_06682278.1| transcriptional regulator, xre family [Enterococcus faecium E980] gi|291608651|gb|EFF37939.1| transcriptional regulator, xre family [Enterococcus faecium E980] Length = 221 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I+ R+ TQKE+ + ++ +EN + L + D Sbjct: 2 NIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPID 59 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++++ R++ ++Q E G+ +G+ + T+S++E RT+P+++ + Q +D+ Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 172 --IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I E I P + S SK+ Sbjct: 61 PSIESATESIEPTLPDEPLVIKKSYSSKQ 89 >gi|256962367|ref|ZP_05566538.1| predicted protein [Enterococcus faecalis Merz96] gi|256952863|gb|EEU69495.1| predicted protein [Enterococcus faecalis Merz96] Length = 308 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K+ R+ TQ+ +A ++ ++ +ENG + + IS D + Sbjct: 7 IGNKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISIDDLL 66 Query: 92 D 92 D Sbjct: 67 D 67 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +LK R++ GM+Q + L +S +E G+ IP +I +D + Sbjct: 9 NKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISIDDLLDN 68 Query: 176 DEVIVPKSIK 185 + KS + Sbjct: 69 RRKHIEKSER 78 >gi|220911740|ref|YP_002487049.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858618|gb|ACL38960.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 191 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 39/97 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+RI+ R++ T +++A + ++ E + S S+ + L IS ++ Sbjct: 15 IGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLSISIGDLF 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + + L I RL + R ++ + Sbjct: 75 VAPETHLTKRNEGPRISLGGQGIVERLLTARSERRIQ 111 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG+R+++ R+ + ++ + G+ LS E+ T P + + QV + + Sbjct: 14 AIGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLSISIGDL 73 Query: 173 YFGDEVIVPKS 183 + E + K Sbjct: 74 FVAPETHLTKR 84 >gi|25011198|ref|NP_735593.1| hypothetical protein gbs1147 [Streptococcus agalactiae NEM316] gi|23095622|emb|CAD46806.1| unknown [Streptococcus agalactiae NEM316] Length = 65 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+K++RK +Q+ +A + ++ +E G S A L +++S D + + Sbjct: 7 NRVKELRKQAGLSQQALADQIGVMRKTISHWELGNHRISTDNAKKLSQFFQVSIDDLLE 65 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K +RK G+SQ +G+ T+S++E G A+K+ Q + +D + Sbjct: 5 TQNRVKELRKQAGLSQQALADQIGVMRKTISHWELGNHRISTDNAKKLSQFFQVSIDDLL 64 >gi|238790799|ref|ZP_04634557.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC 33641] gi|238721114|gb|EEQ12796.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC 33641] Length = 234 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ R + TQ ++A +V +E+G+ L + +W+ Sbjct: 18 EMNDRIRIRRLQLDLTQVQLAKAIGVSRVSVTKWESGITKPDGENLHRLAQVLSCTPEWL 77 Query: 91 YDG 93 G Sbjct: 78 LYG 80 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R++ R ++Q++ K +G+ +++ +E G T P+ + ++ QV +W+ Sbjct: 18 EMNDRIRIRRLQLDLTQVQLAKAIGVSRVSVTKWESGITKPDGENLHRLAQVLSCTPEWL 77 Query: 173 YFG 175 +G Sbjct: 78 LYG 80 >gi|77409837|ref|ZP_00786476.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77171552|gb|EAO74782.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 148 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 29/85 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQ+E+A + + +ENG A L + +S ++ Sbjct: 2 NRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLLGY 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + + L Sbjct: 62 APNKKIDFQLNLDGTTLHLTKEQFL 86 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +RK+K ++Q E +G+ T+ +E G + A+++ + + ++ Sbjct: 1 MNRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLL 59 >gi|331017574|gb|EGH97630.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 228 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RK +Q+ +A +S + +E G S++ + + +SF + Sbjct: 4 LGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKIADTLGVSFVDL 63 Query: 91 Y 91 Sbjct: 64 V 64 Score = 61.5 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKH- 168 +G ++ +RK+KG+SQ G S + NYE+G P ++ RKI Sbjct: 1 MNTLGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKIADTLGVSF 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 +D + F D+ P +K K+ Sbjct: 61 VDLVAFTDDNAQPLVVKLKDSAPRLTGKAKE 91 >gi|307243564|ref|ZP_07525711.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] gi|306493064|gb|EFM65070.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] Length = 103 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 31/81 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ +R+ +Q E++ N ++ E S + + +++S D++ Sbjct: 2 NIGYKIRKLREELGLSQLELSEKLNLNNRILSRIELNERSVRDDELVIFADFFDVSTDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + E D Sbjct: 62 LGRTNVRNHPETFAAHTDEDM 82 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R++ G+SQ+E + L + N LS E D+ Sbjct: 1 MNIGYKIRKLREELGLSQLELSEKLNLNNRILSRIELNERSVRDDELVIFADFFDVSTDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|268610104|ref|ZP_06143831.1| hypothetical protein RflaF_11484 [Ruminococcus flavefaciens FD-1] Length = 119 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + ++ +G RIK RK + +Q E+A A+ ++ E G + + + Sbjct: 2 SDTKERLVPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEA 61 Query: 83 YEISFDWIYDGEVIDRR 99 +IS D + ++ + Sbjct: 62 LQISTDKLLRPDIPETT 78 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K RK+ +SQ E + + LS E G++ + +I + + D + Sbjct: 13 ERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQISTDKLLRP 72 Query: 176 D 176 D Sbjct: 73 D 73 >gi|225863714|ref|YP_002749092.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225789773|gb|ACO29990.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 77 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R++ +Q+++A AV +E+ I + L Y ++ ++ Sbjct: 3 LGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSEMYNVT--YMI 60 Query: 92 DGEVI 96 E Sbjct: 61 KSEKN 65 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++G +LK +R+ KG SQ + K +G+ + +E ++ P+I + ++ Sbjct: 1 MSLGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSEMYNVT 57 >gi|331089117|ref|ZP_08338021.1| hypothetical protein HMPREF1025_01604 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406017|gb|EGG85541.1| hypothetical protein HMPREF1025_01604 [Lachnospiraceae bacterium 3_1_46FAA] Length = 135 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK RK +Q ++ + A++ ENG + S+ L E +W+ Sbjct: 8 IGERIKTRRKELKLSQTDIYERCDITSGALSKIENGKTTPSVIAFYKLSQVLECDMNWLA 67 Query: 92 DGEVIDRRYEDVTNKKR 108 G + + ++ + Sbjct: 68 TGISSNMQKSNICKLEE 84 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD IG R+K+ RK+ +SQ + + + + LS E G+T P + K+ QV + Sbjct: 1 MELDMIGIGERIKTRRKELKLSQTDIYERCDITSGALSKIENGKTTPSVIAFYKLSQVLE 60 Query: 167 KHLDWIYFG 175 ++W+ G Sbjct: 61 CDMNWLATG 69 >gi|256844059|ref|ZP_05549546.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256613964|gb|EEU19166.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] Length = 68 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R + TQ+++A + ++ E G + S+ + + + + D ++ E Sbjct: 5 RMKAARAGKDLTQEDLAQKVDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLFWPE 64 Query: 95 VIDR 98 + Sbjct: 65 EKED 68 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R K ++Q + + + + T+S E+G P + +I Q K LD +++ +E Sbjct: 6 MKAARAGKDLTQEDLAQKVDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLFWPEE 65 >gi|227873975|ref|ZP_03992191.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840183|gb|EEJ50597.1| transcriptional regulator [Oribacterium sinus F0268] Length = 67 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R + +Q+E+A +N E G + +IR L + + + D ++ E Sbjct: 5 RLKSARAGKDLSQQELADLVGVSRQTINAIEKGDYNPTIRLCLAICHVLGKTLDELFWEE 64 Query: 95 VID 97 + Sbjct: 65 APN 67 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LKS R K +SQ E L+G+ T++ E+G P I+ I V K LD +++ + Sbjct: 6 LKSARAGKDLSQQELADLVGVSRQTINAIEKGDYNPTIRLCLAICHVLGKTLDELFWEE 64 >gi|169633695|ref|YP_001707431.1| putative transcriptional regulator [Acinetobacter baumannii SDF] gi|169152487|emb|CAP01455.1| putative transcriptional regulator [Acinetobacter baumannii] Length = 197 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+++R A T +A SA++L E G S + L N E Sbjct: 1 MDDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLE 60 Query: 85 ISFDWIYDGE 94 + I+ E Sbjct: 61 VPLTQIFTNE 70 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + + S +S E+G T P K+ + L I+ Sbjct: 10 HRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFTN 69 Query: 176 D 176 + Sbjct: 70 E 70 >gi|157145741|ref|YP_001453060.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895] gi|157082946|gb|ABV12624.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895] Length = 191 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+ R++ + E+A A + ++ E G S + L + Sbjct: 5 EDSINQRISARIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAFG 64 Query: 85 ISFDWIY 91 IS + Sbjct: 65 ISMSTLI 71 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R+ +G S E + G+ + + E+G + P ++ + + Sbjct: 14 ARIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSTLIAR 73 Query: 176 DEVIVPKSIKRAK 188 E+ K ++ A Sbjct: 74 AEMQEGKLLRFAD 86 >gi|29375456|ref|NP_814610.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|256854283|ref|ZP_05559647.1| transcriptional regulator [Enterococcus faecalis T8] gi|257421117|ref|ZP_05598107.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|294781282|ref|ZP_06746628.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300859696|ref|ZP_07105784.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|29342916|gb|AAO80680.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256709843|gb|EEU24887.1| transcriptional regulator [Enterococcus faecalis T8] gi|257162941|gb|EEU92901.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|294451618|gb|EFG20074.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|295113927|emb|CBL32564.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300850514|gb|EFK78263.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|323480052|gb|ADX79491.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 82 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 31/82 (37%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ + + + R M+Q + +G+ T+ E+ + P + A I V Sbjct: 1 MRKKKKSSFESSIHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVF 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRA 187 +D ++ E + + A Sbjct: 61 GVTIDDVFTFKETLNDDVEQEA 82 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I R TQ+++A + E + S+ A + N + ++ D ++ Sbjct: 13 IHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVFGVTIDDVFT 69 >gi|291544659|emb|CBL17768.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Ruminococcus sp. 18P13] Length = 208 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDW 89 ++G RIK RK +KTQ+E+A + V +ENG + + + +S + Sbjct: 2 NIGERIKTARKEIDKTQQELADAIGTTKQNVYKYENGIITNIPSDKIEAIAKFLHVSPAY 61 Query: 90 IYDGEVIDRRYE 101 ++ E + Sbjct: 62 LFGWEEESLYDQ 73 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLD 170 IG R+K+ RK+ +Q E +G + YE G T I + Sbjct: 1 MNIGERIKTARKEIDKTQQELADAIGTTKQNVYKYENGIITNIPSDKIEAIAKFLHVSPA 60 Query: 171 WIYFGDEV 178 +++ +E Sbjct: 61 YLFGWEEE 68 >gi|259047500|ref|ZP_05737901.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035691|gb|EEW36946.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 180 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 29/79 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ +R TQ+E+A + + ++ EN + S S+ + Sbjct: 2 EIGHQLRALRIQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCPAADF 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 +D + + Sbjct: 62 FDEGPEEALTIYREEDMTM 80 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R KG++Q E + + +S E + P + I +V Sbjct: 1 MEIGHQLRALRIQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCPAAD 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|197261594|ref|YP_002154411.1| helix-turn-helix domain protein [Bacillus phage IEBH] gi|197092466|gb|ACH42341.1| helix-turn-helix domain protein [Bacillus phage IEBH] Length = 79 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G+R++DIRK N TQ+++A + SA++ ENG L N +S D + Sbjct: 3 FGSRVRDIRKQKNITQEKLAKKLDFSHASAISFIENGKRRLDAEKIPTLANALGVSIDEL 62 Query: 91 YDGEV 95 + + Sbjct: 63 FFAQN 67 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G+R++ IRK K ++Q + K L + S +S E G+ + + + +D Sbjct: 1 MTFGSRVRDIRKQKNITQEKLAKKLDFSHASAISFIENGKRRLDAEKIPTLANALGVSID 60 Query: 171 WIYF 174 ++F Sbjct: 61 ELFF 64 >gi|39995190|ref|NP_951141.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39981952|gb|AAR33414.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298504194|gb|ADI82917.1| helix-turn-helix transcriptional regulator with cupin domain [Geobacter sulfurreducens KN400] Length = 196 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 I +I++ +G +I+ +R+ T +E++ + + ++ EN + I L + Sbjct: 4 IKSQIKELR--LGAKIRKLRQDRRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKIS 61 Query: 81 NEYEISFDWIYDGEVI 96 ++ + ++ E Sbjct: 62 KGLKVGIHYFFEEEED 77 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 43/91 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K ++ +GA+++ +R+D+ ++ E +L G+ LS E + P I KI + Sbjct: 5 KSQIKELRLGAKIRKLRQDRRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGL 64 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 K + + + +E + RA Q +++ Sbjct: 65 KVGIHYFFEEEEDQQKVVLTRAAQQQPTRRR 95 >gi|314939175|ref|ZP_07846431.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314941485|ref|ZP_07848373.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314950591|ref|ZP_07853672.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314992445|ref|ZP_07857868.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996689|ref|ZP_07861713.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313589173|gb|EFR68018.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313593020|gb|EFR71865.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313597216|gb|EFR76061.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313599702|gb|EFR78545.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313641522|gb|EFS06102.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 221 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I+ R+ TQKE+ + ++ +EN + L + D Sbjct: 2 NIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPID 59 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++++ R++ ++Q E G+ +G+ + T+S++E RT+P+++ + Q +D+ Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 172 --IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I E I P + S SK+ Sbjct: 61 PSIESATESIEPTLPDEPLVIKKSYSSKQ 89 >gi|288957911|ref|YP_003448252.1| transcriptional regulator [Azospirillum sp. B510] gi|288910219|dbj|BAI71708.1| transcriptional regulator [Azospirillum sp. B510] Length = 353 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 4/123 (3%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 +PE VG R++ R +Q+++ V +E G S L Sbjct: 119 SPESWSVDAHVGQRVRMRRTLLGMSQEKLGEAIGLTFQQVQKYERGSNRISAGTLYRLGQ 178 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 ++ + +D + D + R + + + Sbjct: 179 VLDVPVSFFFDTYNDAGPRRSRGGFEEPDDNNSQISRREARLLRLWR----AAPSHVSDE 234 Query: 142 TLS 144 LS Sbjct: 235 MLS 237 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ R GMSQ + G+ +G+ + YE+G ++ QV + + + Sbjct: 131 QRVRMRRTLLGMSQEKLGEAIGLTFQQVQKYERGSNRISAGTLYRLGQVLDVPVSFFF 188 >gi|254551040|ref|ZP_05141487.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 346 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 6/108 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RKA TQ E+A + A+N +E+G L ++ D + Sbjct: 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLI 63 Query: 92 DGE------VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 G +D K + ARL +R E Sbjct: 64 HGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVA 111 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L RK +G++QIE +L+G+ ++ YE G P+ K+ ++ D + G+ Sbjct: 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 >gi|213966012|ref|ZP_03394201.1| DNA-binding protein [Corynebacterium amycolatum SK46] gi|213951307|gb|EEB62700.1| DNA-binding protein [Corynebacterium amycolatum SK46] Length = 478 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 7/95 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 VG+R++ +R+ + +Q +A S VN E+ + ++ L + + + + Sbjct: 10 VGSRLRQLRRERDLSQAALAQALGLSASYVNQIEHDVRPLTVPVLLRITDTFGVDATFFS 69 Query: 88 ---DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 D EV D + K +D I ++ Sbjct: 70 RDDDSRLLAEVQDVVMDKEIAKSPMDLQEISEMVR 104 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +R+++ +SQ + LG+ S ++ E + +I Sbjct: 5 MSKTYVGSRLRQLRRERDLSQAALAQALGLSASYVNQIEHDVRPLTVPVLLRITDTFGVD 64 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + D+ + ++ ++ KS D + Sbjct: 65 ATFFSRDDDSRLLAEVQDVVMDKEIAKSPMDLQE 98 >gi|15609154|ref|NP_216533.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|148661831|ref|YP_001283354.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|167970453|ref|ZP_02552730.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|306776255|ref|ZP_07414592.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306972365|ref|ZP_07485026.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307080074|ref|ZP_07489244.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307084649|ref|ZP_07493762.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|2896754|emb|CAA17231.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148505983|gb|ABQ73792.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|308215287|gb|EFO74686.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308358155|gb|EFP47006.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308362088|gb|EFP50939.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308365757|gb|EFP54608.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] Length = 346 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 6/108 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RKA TQ E+A + A+N +E+G L ++ D + Sbjct: 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLI 63 Query: 92 DGE------VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 G +D K + ARL +R E Sbjct: 64 HGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVA 111 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L RK +G++QIE +L+G+ ++ YE G P+ K+ ++ D + G+ Sbjct: 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 >gi|17545878|ref|NP_519280.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428173|emb|CAD14861.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 182 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T + +A +S ++ E G+ SI A+ L + + ++ Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLF 60 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +RKD+G + + G+ S LS E+G ++P I A K+ + ++ Sbjct: 5 LKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLF 60 >gi|148550378|ref|YP_001270480.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148514436|gb|ABQ81296.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 199 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE 65 F T L QE + DVG R++ IRK +Q+E+A A S +++ E Sbjct: 4 FTSTPLSPFQEAPAL----------DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIE 53 Query: 66 NGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 S SI + + +S + E+ + + Sbjct: 54 KNSVSPSISSLRKVLSGIPMSMVEFFSVELEPQSPTQI 91 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 +I ++ + +G RL++IRK KG+SQ E K G+ NST+S E+ P Sbjct: 1 MISFTSTPLSPFQEAPALDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPS 60 Query: 155 IKPARKIKQVT-KKHLDWIYFGDEVIVPKS 183 I RK V + + F + P+S Sbjct: 61 ISSLRK---VLSGIPMSMVEFFSVELEPQS 87 >gi|114567544|ref|YP_754698.1| hypothetical protein Swol_2033 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338479|gb|ABI69327.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 64 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK G Q + LG+ T++ E + P ++ A K+ ++ +++ ++ Sbjct: 1 MKNNIKELRKALGYRQEDLAACLGVTRQTINAIENQKYNPTLELAMKLAKLLGTNVEELF 60 Query: 174 FGDE 177 D+ Sbjct: 61 ILDK 64 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK++RKA Q+++A +N EN + ++ A+ L + + ++ Sbjct: 3 NNIKELRKALGYRQEDLAACLGVTRQTINAIENQKYNPTLELAMKLAKLLGTNVEELF 60 >gi|53718580|ref|YP_107566.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|126440552|ref|YP_001058052.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126453277|ref|YP_001065289.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|167718493|ref|ZP_02401729.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167814662|ref|ZP_02446342.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|167844691|ref|ZP_02470199.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|167893219|ref|ZP_02480621.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|167901673|ref|ZP_02488878.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|217419739|ref|ZP_03451245.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|237811203|ref|YP_002895654.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|242316552|ref|ZP_04815568.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254181462|ref|ZP_04888059.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254196408|ref|ZP_04902832.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|52208994|emb|CAH34933.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|126220045|gb|ABN83551.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126226919|gb|ABN90459.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a] gi|169653151|gb|EDS85844.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184212000|gb|EDU09043.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217397043|gb|EEC37059.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|237504755|gb|ACQ97073.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|242139791|gb|EES26193.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] Length = 187 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 39/83 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEGR 64 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 ++ RA S ++ ++ Sbjct: 65 DRELITVTRASERTSMGRASSER 87 >gi|15841500|ref|NP_336537.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31793197|ref|NP_855690.1| regulatory protein [Mycobacterium bovis AF2122/97] gi|121637901|ref|YP_978124.1| regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148823233|ref|YP_001287987.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|215404173|ref|ZP_03416354.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215411712|ref|ZP_03420508.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215427378|ref|ZP_03425297.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215430939|ref|ZP_03428858.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215446234|ref|ZP_03432986.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218753734|ref|ZP_03532530.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219557982|ref|ZP_03537058.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224990395|ref|YP_002645082.1| hypothetical regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798930|ref|YP_003031931.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254232188|ref|ZP_04925515.1| hypothetical protein TBCG_01970 [Mycobacterium tuberculosis C] gi|254364835|ref|ZP_04980881.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|260186992|ref|ZP_05764466.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260201123|ref|ZP_05768614.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260205300|ref|ZP_05772791.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289443512|ref|ZP_06433256.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289447635|ref|ZP_06437379.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289554202|ref|ZP_06443412.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289570123|ref|ZP_06450350.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289574694|ref|ZP_06454921.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289746033|ref|ZP_06505411.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289750599|ref|ZP_06509977.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289754123|ref|ZP_06513501.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289758134|ref|ZP_06517512.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|289762171|ref|ZP_06521549.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294996956|ref|ZP_06802647.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297634592|ref|ZP_06952372.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297731580|ref|ZP_06960698.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298525519|ref|ZP_07012928.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306780036|ref|ZP_07418373.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306784784|ref|ZP_07423106.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306789142|ref|ZP_07427464.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306793476|ref|ZP_07431778.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306797860|ref|ZP_07436162.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306803740|ref|ZP_07440408.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306808314|ref|ZP_07444982.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306968138|ref|ZP_07480799.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|313658913|ref|ZP_07815793.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|13881742|gb|AAK46351.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31618789|emb|CAD96893.1| hypothetical regulatory protein [Mycobacterium bovis AF2122/97] gi|121493548|emb|CAL72022.1| hypothetical regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601247|gb|EAY60257.1| hypothetical protein TBCG_01970 [Mycobacterium tuberculosis C] gi|134150349|gb|EBA42394.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148721760|gb|ABR06385.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224773508|dbj|BAH26314.1| hypothetical regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253320433|gb|ACT25036.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289416431|gb|EFD13671.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289420593|gb|EFD17794.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289438834|gb|EFD21327.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289539125|gb|EFD43703.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289543877|gb|EFD47525.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289686561|gb|EFD54049.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289691186|gb|EFD58615.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289694710|gb|EFD62139.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289709677|gb|EFD73693.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289713698|gb|EFD77710.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|298495313|gb|EFI30607.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308327075|gb|EFP15926.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308330516|gb|EFP19367.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308334351|gb|EFP23202.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308338152|gb|EFP27003.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308341844|gb|EFP30695.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308345332|gb|EFP34183.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308349633|gb|EFP38484.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308354263|gb|EFP43114.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|323719420|gb|EGB28548.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326903630|gb|EGE50563.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328458685|gb|AEB04108.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 346 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 6/108 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RKA TQ E+A + A+N +E+G L ++ D + Sbjct: 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLI 63 Query: 92 DGE------VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 G +D K + ARL +R E Sbjct: 64 HGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVA 111 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L RK +G++QIE +L+G+ ++ YE G P+ K+ ++ D + G+ Sbjct: 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 >gi|319788682|ref|YP_004148157.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317467194|gb|ADV28926.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 65 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+++R + G SQ E + L + T++ E G+ P + A +I ++ + ++ ++ Sbjct: 1 MKNHLRALRDEHGWSQGELAERLEVSRQTVNALETGKYDPSLPLAFRIARLFGRSIEDVF 60 Query: 174 FGDEV 178 DE Sbjct: 61 VPDEP 65 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +R + +Q E+A VN E G S+ A + + S + ++ Sbjct: 3 NHLRALRDEHGWSQGELAERLEVSRQTVNALETGKYDPSLPLAFRIARLFGRSIEDVF 60 >gi|258543250|ref|YP_003188683.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|329114057|ref|ZP_08242821.1| Hypothetical protein APO_0832 [Acetobacter pomorum DM001] gi|256634328|dbj|BAI00304.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256637386|dbj|BAI03355.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256640438|dbj|BAI06400.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256643495|dbj|BAI09450.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646550|dbj|BAI12498.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649603|dbj|BAI15544.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652591|dbj|BAI18525.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655647|dbj|BAI21574.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] gi|326696596|gb|EGE48273.1| Hypothetical protein APO_0832 [Acetobacter pomorum DM001] Length = 122 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK +RK+ TQ+++A A+ +E G ++ ++ L + + + Sbjct: 13 DLGQRIKILRKSAGLTQQQVADALGVSRPAIAFWETGREGSARKHIPKLAALFNVDPEIF 72 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 G V + +T + ++ R Sbjct: 73 LTGYVQEDIELVITPDE-------HDVIRLYRM 98 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +RK G++Q + LG+ ++ +E GR K K+ + + G Sbjct: 16 QRIKILRKSAGLTQQQVADALGVSRPAIAFWETGREGSARKHIPKLAALFNVDPEIFLTG 75 >gi|228477619|ref|ZP_04062252.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250763|gb|EEK09961.1| conserved domain protein [Streptococcus salivarius SK126] Length = 69 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ RK +Q E+A +N+ EN + ++ L L + + ++ Sbjct: 2 NHVREFRKNLGLSQLELAKSIGVSRQTINMIENNKYNPTLELCLNLAKALDTDLNSLFWD 61 Query: 94 EVIDRR 99 E +R Sbjct: 62 ENPNRD 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ RK+ G+SQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNHVREFRKNLGLSQLELAKSIGVSRQTINMIENNKYNPTLELCLNLAKALDTDLNSLFW 60 Query: 175 GD 176 + Sbjct: 61 DE 62 >gi|225027560|ref|ZP_03716752.1| hypothetical protein EUBHAL_01817 [Eubacterium hallii DSM 3353] gi|224955076|gb|EEG36285.1| hypothetical protein EUBHAL_01817 [Eubacterium hallii DSM 3353] Length = 180 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 35/88 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I RK N TQKE+A + AV+ +ENG + L E IS Sbjct: 19 KVGRFIAQNRKDLNLTQKELAEKLGVTDRAVSKWENGRSIPDVGIIESLCKELNISIGEF 78 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + GE I + +K L +L Sbjct: 79 FAGEKIQEKEYKKETEKMLLASLDEKQL 106 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 38/74 (51%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + ++P +G + RKD ++Q E + LG+ + +S +E GR+IP++ + + Sbjct: 12 ENMVEPIKVGRFIAQNRKDLNLTQKELAEKLGVTDRAVSKWENGRSIPDVGIIESLCKEL 71 Query: 166 KKHLDWIYFGDEVI 179 + + G+++ Sbjct: 72 NISIGEFFAGEKIQ 85 >gi|91783413|ref|YP_558619.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687367|gb|ABE30567.1| Predicted transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 152 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 3/118 (2%) Query: 3 LNPFLETSLK---SLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLES 59 + PF + LK Q + I Q + +G I RKA TQ+ ++ +S Sbjct: 1 MTPFHKVRLKLTLPRQTRGVSGLSNIEQLARSIGAAIAARRKALGMTQERLSELIQIEQS 60 Query: 60 AVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 +++ E G S+ + E E ++ ++ ++L + Sbjct: 61 SLSRIERGTLIPSLERLASIAEELECGLADLFYVGGVNSHDRAARVHEKLSHLTPSQQ 118 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 + + RK GM+Q +L+ + S+LS E+G IP ++ I + + L +++ Sbjct: 37 IAARRKALGMTQERLSELIQIEQSSLSRIERGTLIPSLERLASIAEELECGLADLFY 93 >gi|302523093|ref|ZP_07275435.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302431988|gb|EFL03804.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 191 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ +R T +A A + V+ E G + S + L + + + Sbjct: 12 LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNPSYTTLIKLADALRVPVGAFF 71 Query: 92 DG 93 DG Sbjct: 72 DG 73 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL ++R G++ G+ +S E+G P K+ + + + G Sbjct: 14 RRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNPSYTTLIKLADALRVPVGAFFDG 73 Query: 176 -DEVIVPKSIKRAKGNQSSKKSKK 198 ++ P ++ RA G + S + Sbjct: 74 SEDAWEPAAVVRAGGRRRLSLSDE 97 >gi|318057227|ref|ZP_07975950.1| hypothetical protein SSA3_04771 [Streptomyces sp. SA3_actG] gi|318075235|ref|ZP_07982567.1| hypothetical protein SSA3_00560 [Streptomyces sp. SA3_actF] Length = 210 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ +R T +A A + V+ E G + S + L + + + Sbjct: 31 LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNPSYTTLIKLADALRVPVGAFF 90 Query: 92 DG 93 DG Sbjct: 91 DG 92 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 1/110 (0%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + G D V +G RL ++R G++ G+ +S E+G Sbjct: 7 LVSGPDQDEEGGTVAEADERGTDGLGRRLSALRARAGLTISALAAAAGVSQGLVSQIERG 66 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKK 198 P K+ + + + G ++ P ++ RA G + S + Sbjct: 67 AGNPSYTTLIKLADALRVPVGAFFDGSEDAWEPAAVVRAGGRRRLSLSDE 116 >gi|296394961|ref|YP_003659845.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296182108|gb|ADG99014.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 151 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 20/138 (14%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ RK + +++ ++ ES + +ENG + +I + I Sbjct: 17 ARLAYRRK--GISPQDLGRLSDVGESTIWAWENGTRAPNIDTLARAAAVLGVPLSRIVRI 74 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 R L +R G +Q + K +GM + LS E+ T Sbjct: 75 PPRKRT------------------LADLRNLAGFTQPQLAKAVGMTTTALSKLERAETHL 116 Query: 154 EIKPARKIKQVTKKHLDW 171 A+ + + + Sbjct: 117 TAARAQALAPLLAVSTEE 134 >gi|209515409|ref|ZP_03264275.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209504129|gb|EEA04119.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 204 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVGTR++ +R A+ + E+A+ A V+ E + S+R LR E+ + Sbjct: 18 DVGTRLRALRIAHGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALEVPLTAL 77 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + ++ Sbjct: 78 LEEDDAVSDPVTGDFVRK 95 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+++R G+S E G+ T+S E+ + P ++ +++Q + L + D+ Sbjct: 23 LRALRIAHGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALEVPLTALLEEDD 82 Query: 178 VIVP 181 + Sbjct: 83 AVSD 86 >gi|220929560|ref|YP_002506469.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999888|gb|ACL76489.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 206 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 31/75 (41%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + E + G R+K +R+ +N +Q+++ +A+ +E + L Sbjct: 122 SVEHSRKEGSFGIRLKRLRRIHNISQEDLGKVLGVGRTAIANWETNQTEPTGENIKKLAE 181 Query: 82 EYEISFDWIYDGEVI 96 + ++ D++ + Sbjct: 182 LFRVTTDYLLCYKAN 196 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 34/56 (60%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R+ +SQ + GK+LG+ + ++N+E +T P + +K+ ++ + D++ Sbjct: 136 LKRLRRIHNISQEDLGKVLGVGRTAIANWETNQTEPTGENIKKLAELFRVTTDYLL 191 >gi|325962304|ref|YP_004240210.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468391|gb|ADX72076.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 191 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 40/97 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+RI+ R++ T +++A + ++ E + S S+ + L IS ++ Sbjct: 15 IGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLSISIGDLF 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + + L + I RL + R ++ + Sbjct: 75 AAPETHLTKRNDGPRISLGGHGIVERLLTARSERRVQ 111 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG+R+++ R+ + ++ + G+ LS E+ T P + + QV + + Sbjct: 14 AIGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLSISIGDL 73 Query: 173 YFGDEVIVPKS 183 + E + K Sbjct: 74 FAAPETHLTKR 84 >gi|323357088|ref|YP_004223484.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323273459|dbj|BAJ73604.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 479 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 29/87 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R A T E+ S ++L ENG + + E + Sbjct: 10 LGHRIRHHRLARGLTLDELGALVGVAGSQLSLIENGKREPKLSLLQEIARATETEVTELL 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E +RR +R +L Sbjct: 70 STEPPNRRAALEIELERAQSSPFFQQL 96 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R +G++ E G L+G+ S LS E G+ P++ ++I + T+ + + Sbjct: 12 HRIRHHRLARGLTLDELGALVGVAGSQLSLIENGKREPKLSLLQEIARATETEVTELLST 71 Query: 176 D 176 + Sbjct: 72 E 72 >gi|322388988|ref|ZP_08062558.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321144293|gb|EFX39701.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 247 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 2/84 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ R TQ ++ + +ENG+ + L + D+ + Sbjct: 27 KKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINK 86 Query: 94 EV--IDRRYEDVTNKKRLDPYAIG 115 + ++K++D A Sbjct: 87 DSALYTYPLLTPPHQKKVDQLASQ 110 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 33/81 (40%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 D+ Y R +LK R +KG++Q + + L + T S++E G P Sbjct: 7 FDKLYVTFKTLHRRTDMFDAKKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHE 66 Query: 156 KPARKIKQVTKKHLDWIYFGD 176 K R++ + D+ D Sbjct: 67 KNLRRLAKRLSVKEDYFINKD 87 >gi|312867200|ref|ZP_07727410.1| peptidase S24-like protein [Streptococcus parasanguinis F0405] gi|311097329|gb|EFQ55563.1| peptidase S24-like protein [Streptococcus parasanguinis F0405] Length = 225 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 2/84 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ R TQ ++ + +ENG+ + L + D+ + Sbjct: 5 KKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINK 64 Query: 94 EV--IDRRYEDVTNKKRLDPYAIG 115 + ++K++D A Sbjct: 65 DSALYTYPLLTPPHQKKVDQLASQ 88 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R +KG++Q + + L + T S++E G P K R++ + D+ Sbjct: 1 MFDAKKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDY 60 Query: 172 IYFGD 176 D Sbjct: 61 FINKD 65 >gi|296876982|ref|ZP_06901026.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432017|gb|EFH17820.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 225 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 2/84 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ R TQ ++ + +ENG+ + L + D+ + Sbjct: 5 KKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINK 64 Query: 94 EV--IDRRYEDVTNKKRLDPYAIG 115 + ++K++D A Sbjct: 65 DSALYTYPLLTPPHQKKVDQLASQ 88 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R +KG++Q + + L + T S++E G P K R++ + D+ Sbjct: 1 MFDAKKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDY 60 Query: 172 IYFGD 176 D Sbjct: 61 FINKD 65 >gi|238917665|ref|YP_002931182.1| hypothetical protein EUBELI_01745 [Eubacterium eligens ATCC 27750] gi|238873025|gb|ACR72735.1| Hypothetical protein EUBELI_01745 [Eubacterium eligens ATCC 27750] Length = 185 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 13/137 (9%) Query: 2 FLNPFLETSL---KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLE 58 + FL T++ + ++Y IT E + + +R KTQ+++A Sbjct: 10 TIPIFLTTTIGRIRIYKDYNTYITTERTDIM--LQENLIMLRSFAGKTQEDIAEVIGISR 67 Query: 59 SAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA-- 116 A +E G I L Y ++ D + +V + K + + Sbjct: 68 QAYAKWERGETIPDIEKCGRLAEFYGVTMDSLIKDDVQLEGQKMAPAPKGKHMWGVVTVN 127 Query: 117 ---RL---KSIRKDKGM 127 ++ K R+ G+ Sbjct: 128 DRGQIVIPKEARETFGL 144 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L +R G +Q + +++G+ + +E+G TIP+I+ ++ + +D Sbjct: 39 IMLQENLIMLRSFAGKTQEDIAEVIGISRQAYAKWERGETIPDIEKCGRLAEFYGVTMDS 98 Query: 172 IYFGD 176 + D Sbjct: 99 LIKDD 103 >gi|229170494|ref|ZP_04298145.1| hypothetical protein bcere0007_54110 [Bacillus cereus AH621] gi|228612964|gb|EEK70138.1| hypothetical protein bcere0007_54110 [Bacillus cereus AH621] Length = 163 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK++R N TQKE+A + V+ +E S + L + ++++ D+I Sbjct: 9 GKRIKELRNIKNWTQKELAKNIDVTSQVVSNWEREYTSPNHEDLLKMSKLFQVTTDYILL 68 Query: 93 GEVIDRRYEDVTNKKRLD 110 G ++ + + L+ Sbjct: 69 GNNNIKKINLNYDFESLN 86 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+K +R K +Q E K + + + +SN+E+ T P + K+ ++ + D+I Sbjct: 8 YGKRIKELRNIKNWTQKELAKNIDVTSQVVSNWEREYTSPNHEDLLKMSKLFQVTTDYIL 67 Query: 174 FG 175 G Sbjct: 68 LG 69 >gi|225019513|ref|ZP_03708705.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum DSM 5476] gi|224947734|gb|EEG28943.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum DSM 5476] Length = 154 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 20/57 (35%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++ +R TQ +A + + V +E G L + + D + Sbjct: 50 RLRQLRLERGLTQAALAKHLDVSQGTVGNWEGGKREPDFATVARLAALFGTTVDDLI 106 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +R ++G++Q K L + T+ N+E G+ P+ ++ + +D + Sbjct: 46 MFAHRLRQLRLERGLTQAALAKHLDVSQGTVGNWEGGKREPDFATVARLAALFGTTVDDL 105 Query: 173 Y 173 Sbjct: 106 I 106 >gi|222530393|ref|YP_002574275.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457240|gb|ACM61502.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 77 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +++ +R +Q+++A A +S + E + +I+ L +S + Sbjct: 2 VGKKLRKLRTQKGLSQQQLAKIAGVPQSTIWYIERENRNPTIKTMKRLATALGVSIEEFL 61 Query: 92 DGEVIDRRYEDVTNK 106 D E + Sbjct: 62 DSETKEMITNGSQKN 76 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +L+ +R KG+SQ + K+ G+P ST+ E+ P IK +++ ++ Sbjct: 1 MVGKKLRKLRTQKGLSQQQLAKIAGVPQSTIWYIERENRNPTIKTMKRLATALGVSIEEF 60 Query: 173 YFGD 176 + Sbjct: 61 LDSE 64 >gi|170760571|ref|YP_001787673.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407560|gb|ACA55971.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 78 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R+D G++Q + G+L+G+ ++ E G+ P I A I +V ++ ++ Sbjct: 1 MKNKLKQFREDLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVF 60 Query: 174 FGDEVIVPKSIKRAKG 189 +E ++++G Sbjct: 61 LFEESERKSRAEKSRG 76 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R+ TQ+++ A+N E G SI A + + + + ++ Sbjct: 3 NKLKQFREDLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 94 EVIDRRYEDVTNK 106 E +R+ ++ Sbjct: 63 EESERKSRAEKSR 75 >gi|206971652|ref|ZP_03232602.1| DNA-binding protein [Bacillus cereus AH1134] gi|228952730|ref|ZP_04114804.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069917|ref|ZP_04203198.1| Transcriptional regulator, XRE [Bacillus cereus F65185] gi|229079584|ref|ZP_04212121.1| Transcriptional regulator, XRE [Bacillus cereus Rock4-2] gi|229178751|ref|ZP_04306115.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|206733637|gb|EDZ50809.1| DNA-binding protein [Bacillus cereus AH1134] gi|228604909|gb|EEK62366.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228703753|gb|EEL56202.1| Transcriptional regulator, XRE [Bacillus cereus Rock4-2] gi|228713208|gb|EEL65102.1| Transcriptional regulator, XRE [Bacillus cereus F65185] gi|228807006|gb|EEM53551.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 186 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + S Sbjct: 66 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNKQA---NTTES 122 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 S+ ++ I K +V L+ ++ GD V +P ++K N+S + + Sbjct: 123 HYSHEDKEE----IAVIMK-GEVY-VELEGKEYFLEEGDVVRIPPNVKHRFLNKSDESN 175 Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ D + Sbjct: 13 YRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFIND-IDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENND 90 >gi|162457184|ref|YP_001619551.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] gi|161167766|emb|CAN99071.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] Length = 79 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 1/69 (1%) Query: 29 WKDVGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + I+ +R TQ E+A + E G S S+ A + + + Sbjct: 5 QPQITNVIRTLRFHAGEMTQAELAEKVGVTRQTIVAIEQGRYSPSLEVAFRIAAAFGVPL 64 Query: 88 DWIYDGEVI 96 + ++ + Sbjct: 65 EHVFQWKGD 73 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I ++++R G M+Q E + +G+ T+ EQGR P ++ A +I L+ + Sbjct: 8 ITNVIRTLRFHAGEMTQAELAEKVGVTRQTIVAIEQGRYSPSLEVAFRIAAAFGVPLEHV 67 Query: 173 Y 173 + Sbjct: 68 F 68 >gi|134281019|ref|ZP_01767728.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|134247325|gb|EBA47410.1| DNA-binding protein [Burkholderia pseudomallei 305] Length = 187 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 39/83 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEGR 64 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 ++ RA S ++ ++ Sbjct: 65 DRELITVTRASERTSMGRASSER 87 >gi|110679476|ref|YP_682483.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109455592|gb|ABG31797.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 468 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +++ +R++ N TQ EMA + +NL EN S S++ + L Y I + + Sbjct: 6 VGPQLRQLRRSFNHTQAEMARQLGVSAAYINLLENNQRSLSVKMLMELTESYGIDWRSLV 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + I + T + L+ +R Sbjct: 66 NDSEITHLADLRTAVRDPIFEGDTPDLQEMR 96 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 29/71 (40%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +L+ +R+ +Q E + LG+ + ++ E + +K ++ + + Sbjct: 9 QLRQLRRSFNHTQAEMARQLGVSAAYINLLENNQRSLSVKMLMELTESYGIDWRSLVNDS 68 Query: 177 EVIVPKSIKRA 187 E+ ++ A Sbjct: 69 EITHLADLRTA 79 >gi|89893759|ref|YP_517246.1| hypothetical protein DSY1013 [Desulfitobacterium hafniense Y51] gi|89333207|dbj|BAE82802.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 361 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G I RK + TQ+++A AV+ +E G I + + D + Sbjct: 4 DMGKVITAKRKEKSWTQEQLAQAVGVSTPAVSKWETGATYPDITLLPPIARALNTTVDEL 63 Query: 91 YDGEVI 96 + + Sbjct: 64 FSYQNE 69 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G + + RK+K +Q + + +G+ +S +E G T P+I I + +D ++ Sbjct: 5 MGKVITAKRKEKSWTQEQLAQAVGVSTPAVSKWETGATYPDITLLPPIARALNTTVDELF 64 Query: 174 FGDEVIVPKSI 184 + + Sbjct: 65 SYQNELSDNDV 75 >gi|327472731|gb|EGF18158.1| transcriptional regulator [Streptococcus sanguinis SK408] Length = 71 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFW 60 Query: 175 GDEVIVPKS 183 ++ S Sbjct: 61 DPQLTDEDS 69 >gi|312897732|ref|ZP_07757148.1| LexA repressor family protein [Megasphaera micronuciformis F0359] gi|310621116|gb|EFQ04660.1| LexA repressor family protein [Megasphaera micronuciformis F0359] Length = 218 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 41/116 (35%), Gaps = 12/116 (10%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-------TSIRYALYLRN 81 +++G I++ R+++ + +E ++ ++L E G + SI + + Sbjct: 1 MENIGDLIREYRQSHGLSMEEFGKRVGLSKAYISLIERGKNTRSNKPIVPSIDTMKAIAD 60 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 E+ D + ++ + + + R G+ ++L Sbjct: 61 GLEMDLDVLLRSIDPSQKIKINNTHPKGVQIPVLG-----RVVAGVPLEAVEEILD 111 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-------PEIKPARKIKQVTKKHLD 170 ++ R+ G+S EFGK +G+ + +S E+G+ P I + I + LD Sbjct: 8 IREYRQSHGLSMEEFGKRVGLSKAYISLIERGKNTRSNKPIVPSIDTMKAIADGLEMDLD 67 Query: 171 WIYFGDEVIVPKSI 184 + + I Sbjct: 68 VLLRSIDPSQKIKI 81 >gi|257077759|ref|ZP_05572120.1| predicted protein [Enterococcus faecalis JH1] gi|256985789|gb|EEU73091.1| predicted protein [Enterococcus faecalis JH1] Length = 268 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 42 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 101 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 102 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 151 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYE 147 +I Y+ + K + +GAR++ RK K + +G+ + ST+SN+E Sbjct: 20 YILRTPYPHIYYKRSVSMK-ITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWE 78 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 G +P + +KI + +DW+ +GD Sbjct: 79 LGLNLPNKRYLKKIAKACDTTVDWLLYGD 107 >gi|241763075|ref|ZP_04761136.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241367858|gb|EER62090.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 121 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 40/105 (38%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + I+ E R + +G RI R+A TQ ++A + V +E G + Sbjct: 1 MAISSEERDFLVTLGERIAAQRQACGITQVQLAEVLGVSQQTVQAYEVGRRRIQVAALPT 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + +S + ++ + RR + K + + L R+ Sbjct: 61 VARTLSLSLEELFGEDTQARRSKRGPASKLENQLERISTLPKPRQ 105 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ + R+ G++Q++ ++LG+ T+ YE GR ++ + + L+ ++ Sbjct: 16 ERIAAQRQACGITQVQLAEVLGVSQQTVQAYEVGRRRIQVAALPTVARTLSLSLEELFGE 75 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D ++ + +G S +++ ++ S+ P Sbjct: 76 D----TQARRSKRGPASKLENQLERISTLP 101 >gi|315221870|ref|ZP_07863782.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315189103|gb|EFU22806.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 207 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 31/82 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++R+ TQ+E+A + + +E G A L + + +S ++ Sbjct: 5 NRIKELRQKEKLTQEELANKIGVTKRTIIAWEKGERQIKQDKAQQLADYFGVSVRYLLGY 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIG 115 E ++ + A Sbjct: 65 EDDYLSSMIKKYEESMKNPADF 86 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 37/82 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R+K +R+ + ++Q E +G+ T+ +E+G + A+++ + + Sbjct: 1 MIKLNRIKELRQKEKLTQEELANKIGVTKRTIIAWEKGERQIKQDKAQQLADYFGVSVRY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + ++ + IK+ + + + Sbjct: 61 LLGYEDDYLSSMIKKYEESMKN 82 >gi|307689851|ref|ZP_07632297.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] Length = 63 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K+ RK TQ E+A +N EN + ++ AL + +S + ++ Sbjct: 3 NKVKEFRKQLKLTQDELAQELGVTRQTINAIENNKYNPTLELALKMSRFLGVSTESLF 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K RK ++Q E + LG+ T++ E + P ++ A K+ + + ++ Sbjct: 1 MKNKVKEFRKQLKLTQDELAQELGVTRQTINAIENNKYNPTLELALKMSRFLGVSTESLF 60 Query: 174 FGD 176 D Sbjct: 61 ILD 63 >gi|24378683|ref|NP_720638.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|290579667|ref|YP_003484059.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|24376546|gb|AAN57944.1|AE014868_6 putative transcriptional regulator [Streptococcus mutans UA159] gi|254996566|dbj|BAH87167.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 64 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK+ R K +SQ L+G+ T++ E+G P I KI + K LD +++ + Sbjct: 6 LKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIKICKALDKSLDELFWEE 64 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R + +Q+ +A + E G + +I + + + S D ++ E Sbjct: 5 RLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIKICKALDKSLDELFWEE 64 >gi|51247424|pdb|1SQ8|A Chain A, A Variant 434 Repressor Dna Binding Domain Devoid Of Hydroxyl Groups, Nmr, 20 Structures Length = 64 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R Q E+A + A+ ENG R+ L ++ DW+ Sbjct: 3 MGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKAK-RPRFLPELARALGVAVDWLL 61 Query: 92 DG 93 +G Sbjct: 62 NG 63 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+++ R G++Q E + +G+ + E G+ + ++ + +DW Sbjct: 1 MLMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKAK-RPRFLPELARALGVAVDW 59 Query: 172 IYFG 175 + G Sbjct: 60 LLNG 63 >gi|328957520|ref|YP_004374906.1| putative transcriptional regulator (Xre family); skin element [Carnobacterium sp. 17-4] gi|328673844|gb|AEB29890.1| putative transcriptional regulator (Xre family); skin element [Carnobacterium sp. 17-4] Length = 166 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K RK TQ+++A + +V+ +E G I + L Y++S D + E Sbjct: 7 LKQKRKELKLTQEQVAQKIFVSQKSVSNWETGKTFPDIYSLIRLAQLYDLSLDNLLLEES 66 Query: 96 IDRRYEDVT 104 D Sbjct: 67 DIVEDIDKK 75 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK RK+ ++Q + + + + ++SN+E G+T P+I ++ Q+ LD Sbjct: 1 MEINLILKQKRKELKLTQEQVAQKIFVSQKSVSNWETGKTFPDIYSLIRLAQLYDLSLDN 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + IV K+ K Sbjct: 61 LLLEESDIVEDIDKKIK 77 >gi|325262228|ref|ZP_08128966.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324033682|gb|EGB94959.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 643 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L RK KG +Q + + L + ST +NYE G P+++ +I +V + LD ++ Sbjct: 5 FHEYLVLFRKLKGYTQAQMAEKLEISRSTYTNYEIGNRSPDLETLERISEVLECSLDELF 64 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 17/146 (11%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE---- 94 RK TQ +MA S +E G S + + E S D ++ Sbjct: 12 FRKLKGYTQAQMAEKLEISRSTYTNYEIGNRSPDLETLERISEVLECSLDELFGKTPVRT 71 Query: 95 ---------VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ---IEFGKLLGMPNST 142 ++V K + +R+ G + L + Sbjct: 72 ADMVSETPVPYRVSSKEVPKVKGRKLAIGLQDFRRLREKNGYYVDKTKMIEEFLD-SDYQ 130 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + R + + + Sbjct: 131 ITLLTRPRRFGKTMNMSMLSEFLDCS 156 >gi|315650286|ref|ZP_07903358.1| helix-turn-helix domain protein [Eubacterium saburreum DSM 3986] gi|315487397|gb|EFU77707.1| helix-turn-helix domain protein [Eubacterium saburreum DSM 3986] Length = 121 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++++RKA T + +SAV+ E G + + + L + E+ ++ +W+ Sbjct: 1 MGERVRELRKALGLTLEAFGEKVGVGKSAVSRLEKGTNNLTEQMILAICREFNVNEEWLR 60 Query: 92 DGEVIDR 98 G Sbjct: 61 TGNGEMF 67 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 43/90 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R++ +RK G++ FG+ +G+ S +S E+G + I + + +W+ Sbjct: 1 MGERVRELRKALGLTLEAFGEKVGVGKSAVSRLEKGTNNLTEQMILAICREFNVNEEWLR 60 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 G+ + K + + + ++ +++ S Sbjct: 61 TGNGEMFIKLDRETEIARLTRDLLLEEEDS 90 >gi|171322013|ref|ZP_02910893.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171092688|gb|EDT37979.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 73 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G ++ +R+A +Q+++A A S V E G SI A + +E Sbjct: 1 MSDLIQHFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFE 60 Query: 85 ISFDWIYDG 93 +S + G Sbjct: 61 VSISTLLPG 69 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GA ++ +R+ + SQ + + G+ S + E+G I I A KI + + + + Sbjct: 7 HFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFEVSISTL 66 Query: 173 YFG 175 G Sbjct: 67 LPG 69 >gi|153938949|ref|YP_001391593.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|168180756|ref|ZP_02615420.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226949661|ref|YP_002804752.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|152934845|gb|ABS40343.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|182668489|gb|EDT80468.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226842839|gb|ACO85505.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|295319621|gb|ADF99998.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] gi|322806632|emb|CBZ04201.1| transcriptional regulator, Cro/CI family [Clostridium botulinum H04402 065] Length = 78 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 40/76 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R++ G++Q + G+L+G+ ++ E G+ P I A I +V ++ ++ Sbjct: 1 MKNKLKQFRENLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVF 60 Query: 174 FGDEVIVPKSIKRAKG 189 +E ++++G Sbjct: 61 LFEESERKSRAEKSRG 76 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R+ TQ+++ A+N E G SI A + + + + ++ Sbjct: 3 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 94 EVIDRRYEDVTNK 106 E +R+ ++ Sbjct: 63 EESERKSRAEKSR 75 >gi|83951509|ref|ZP_00960241.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83836515|gb|EAP75812.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 143 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 8/127 (6%) Query: 14 LQEYTLIITPEIRQYWKD-----VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 ++ + + Q W D G R+ R+A+ TQ ++A E + +EN + Sbjct: 7 TKDEDFMTETDSEQTWYDPDATTFGDRLAGAREASGMTQTQLARRLGVKEKTIEKWENDL 66 Query: 69 CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 L +S W+ G+ + + L+ +R+ + + Sbjct: 67 SEPRANRLSMLAGLLNVSILWLISGDGDAPEAPGESAASE---ATLDDLLRELRQVQAVL 123 Query: 129 QIEFGKL 135 ++ Sbjct: 124 TRSAARI 130 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 32/99 (32%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E + D G RL R+ GM+Q + + LG+ T+ +E + Sbjct: 8 KDEDFMTETDSEQTWYDPDATTFGDRLAGAREASGMTQTQLARRLGVKEKTIEKWENDLS 67 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGN 190 P + + + W+ GD + A Sbjct: 68 EPRANRLSMLAGLLNVSILWLISGDGDAPEAPGESAASE 106 >gi|271961986|ref|YP_003336182.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505161|gb|ACZ83439.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 189 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 DVG RI+ +R+ + E+A A ++ ++ ENG + ++ + + + Sbjct: 23 PDVGQRIRRLREERGISLSELARRAGVGKATLSGLENGTRNPTLETLWAVTAQLGVPL 80 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 35/80 (43%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + ++D + + + +G R++ +R+++G+S E + G+ +TLS E G Sbjct: 1 MLHDSLMDSGTQSPRPARDIGTPDVGQRIRRLREERGISLSELARRAGVGKATLSGLENG 60 Query: 150 RTIPEIKPARKIKQVTKKHL 169 P ++ + L Sbjct: 61 TRNPTLETLWAVTAQLGVPL 80 >gi|284040164|ref|YP_003390094.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283819457|gb|ADB41295.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 68 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +I+D RKA TQKE+A ES VN +E+G + +I + + N + F + Sbjct: 11 QIRDARKAKGLTQKELAEKLGVSESTVNQYESGKQNLTIDTLVKIANALGMKFSTLL 67 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ RK KG++Q E + LG+ ST++ YE G+ I KI + Sbjct: 11 QIRDARKAKGLTQKELAEKLGVSESTVNQYESGKQNLTIDTLVKIANALGMKFSTLL 67 >gi|225175587|ref|ZP_03729581.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225168916|gb|EEG77716.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 121 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 12/99 (12%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIK +R+ + TQ++ A S ++ E G+ + + + D++ Sbjct: 6 GQRIKLLREEHGYTQRDFAKVIGINNSVLSRIEAGIRPVEDELLSKFASFFHCTADYLLG 65 Query: 93 G------------EVIDRRYEDVTNKKRLDPYAIGARLK 119 E+ + +V NK +++ + A LK Sbjct: 66 RSDFRRGRLVTDTELKEFLPPEVVNKNKIEMWVDEAELK 104 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K +R++ G +Q +F K++G+ NS LS E G E + K D++ Sbjct: 7 QRIKLLREEHGYTQRDFAKVIGINNSVLSRIEAGIRPVEDELLSKFASFFHCTADYLL 64 >gi|94313728|ref|YP_586937.1| putative DNA-binding transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357580|gb|ABF11668.1| putative DNA-binding transcriptional regulator, Helix-turn-helix motif [Cupriavidus metallidurans CH34] Length = 203 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 13 SLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 ++ + + TP + VG+ ++ +R++ + E++ A +S ++ E + + + Sbjct: 2 TMSQPSPSKTPMTAEGPPAVGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANPT 61 Query: 73 IRYALYLRNEYEISF-DWIYDGEVIDRRY 100 + L N +S D++ G + Sbjct: 62 VAVLWRLANALGVSLTDFLAQGTAAPQAP 90 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G+ L+++R+ + +S E + G+ S LS E+ P + ++ L Sbjct: 20 AVGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 79 Query: 173 Y 173 Sbjct: 80 L 80 >gi|313889436|ref|ZP_07823084.1| peptidase S24-like protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122268|gb|EFR45359.1| peptidase S24-like protein [Streptococcus pseudoporcinus SPIN 20026] Length = 230 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G ++K IR+ +Q+E+ + ++ +E G S + ++ L + +++S D+ Sbjct: 4 GEQLKAIRQKEKMSQEELGHQIGVNKMTISNWEQGKNSPNQKHLAKLVDIFQVSEDYF 61 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK+IR+ + MSQ E G +G+ T+SN+EQG+ P K K+ + + D+ Sbjct: 1 MFAGEQLKAIRQKEKMSQEELGHQIGVNKMTISNWEQGKNSPNQKHLAKLVDIFQVSEDY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|307286682|ref|ZP_07566768.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306502160|gb|EFM71444.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315165266|gb|EFU09283.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 232 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R++D RK T + +A S ++ +E G+ + RY + + + D Sbjct: 6 KQVGARMRDARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 115 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVT 165 ++ +GAR++ RK K + +G+ + ST+SN+E G +P + +KI + Sbjct: 1 MKITTKQVGARMRDARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC 60 Query: 166 KKHLDWIYFGD 176 +DW+ +GD Sbjct: 61 DTTVDWLLYGD 71 >gi|295110793|emb|CBL24746.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 104 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 39/95 (41%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +++ +++ + IR+ N +Q++ A AV+ +E G+ +I + + ++ Sbjct: 3 KVKDSNQNIAKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKF 62 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 I D + + + ++ + D L Sbjct: 63 AIPVDEMLKSGDVVEKIDNNKTPFKKDRNYSIVFL 97 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 IR+D +SQ +F +++G+ +S +E G ++P I I + +D + +V Sbjct: 17 KIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFAIPVDEMLKSGDV- 75 Query: 180 VPKSIKRAKGNQSSKKSKKDK 200 +++ N++ K ++ Sbjct: 76 ----VEKIDNNKTPFKKDRNY 92 >gi|269794408|ref|YP_003313863.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269096593|gb|ACZ21029.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 64 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ +R+A +Q + +N E G S+ A+ + + + + I+ Sbjct: 5 VRALREAAGLSQAALGTVLGVSRQTINSIETGKYDPSLPLAIAIARHFTTTVEEIFH 61 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++++R+ G+SQ G +LG+ T+++ E G+ P + A I + ++ I+ Sbjct: 1 MLNDVRALREAAGLSQAALGTVLGVSRQTINSIETGKYDPSLPLAIAIARHFTTTVEEIF 60 Query: 174 FGD 176 D Sbjct: 61 HVD 63 >gi|237744347|ref|ZP_04574828.1| predicted protein [Fusobacterium sp. 7_1] gi|229431576|gb|EEO41788.1| predicted protein [Fusobacterium sp. 7_1] Length = 189 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK++RK NN TQKEMA S++ +E G SI + + I+ + Sbjct: 2 KISEKIKELRKNNNLTQKEMAKKLGVSLSSLQKYEYGDFYPSIEVIRKIVEFFNITLNDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 D I ++V N + +++ ++ + + G+ N N Sbjct: 62 LDVSDISNEEKEVINWNIKRSREVEKEIENDIEENARNIEILTEDEGIKNLYCDNI 117 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K +RK+ ++Q E K LG+ S+L YE G P I+ RKI + L+ Sbjct: 1 MKISEKIKELRKNNNLTQKEMAKKLGVSLSSLQKYEYGDFYPSIEVIRKIVEFFNITLND 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 +V + ++ N + K+S++ +K Sbjct: 61 FL---DVSDISNEEKEVINWNIKRSREVEKE 88 >gi|227878168|ref|ZP_03996142.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256850532|ref|ZP_05555959.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262047426|ref|ZP_06020382.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|227862199|gb|EEJ69744.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256712737|gb|EEU27731.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260572196|gb|EEX28760.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] Length = 65 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ+++A + ++ E G + SI + + + + D ++ E Sbjct: 5 KMKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSINLCIKICQALDKTLDDLFWPE 64 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K+ R K ++Q + + + + T+S E+G P I KI Q K LD +++ + Sbjct: 6 MKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSINLCIKICQALDKTLDDLFWPE 64 >gi|160878433|ref|YP_001557401.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427099|gb|ABX40662.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 276 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I D RK TQKE+A + AV+ +E G+ I L + ++ + +GE Sbjct: 10 IADQRKIKKLTQKELAAKLGVTDKAVSKWERGLSCPDISLLSTLSDILGVTTGELLNGER 69 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + + RK K + Sbjct: 70 AVMLENTNVDSIVESTIQYADTVTK-RKSKDIR 101 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 12/105 (11%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D + + RK K ++Q E LG+ + +S +E+G + P+I + + Sbjct: 1 MDNEKMALFIADQRKIKKLTQKELAAKLGVTDKAVSKWERGLSCPDISLLSTLSDILGVT 60 Query: 169 LDWIYFGD----------EVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + G+ + IV +I+ A +K+ KD +++ Sbjct: 61 TGELLNGERAVMLENTNVDSIVESTIQYADT--VTKRKSKDIRNA 103 >gi|308177557|ref|YP_003916963.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307745020|emb|CBT75992.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 191 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 28/65 (43%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + + RI+++R+ + + +A A+ S ++ E G ++ + + S Sbjct: 6 EVDQVIRQRIRNLRQNLGWSLESLASKASMSVSTLSRIETGSRRIALDQLIPIAKALNTS 65 Query: 87 FDWIY 91 D + Sbjct: 66 LDELV 70 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++++R++ G S M STLS E G + I + LD + Sbjct: 10 VIRQRIRNLRQNLGWSLESLASKASMSVSTLSRIETGSRRIALDQLIPIAKALNTSLDEL 69 Query: 173 YFGDE---VIVPKSI 184 E +I P+ I Sbjct: 70 VSTSEAQIIIRPEPI 84 >gi|254823297|ref|ZP_05228298.1| transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length = 174 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 39/81 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + A L+++RK +G++ + G+ S LS E+ R+ P I A K+ + + ++ Sbjct: 1 MTALLRAVRKQRGLTLEALAQQTGLTKSYLSKIERRRSTPSIAVALKVAKALDVDVGRLF 60 Query: 174 FGDEVIVPKSIKRAKGNQSSK 194 + +++RA + + Sbjct: 61 SEEAAHEKITVERAASAEGER 81 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +RK T + +A +S ++ E + SI AL + ++ ++ E Sbjct: 5 LRAVRKQRGLTLEALAQQTGLTKSYLSKIERRRSTPSIAVALKVAKALDVDVGRLFSEE 63 >gi|237733689|ref|ZP_04564170.1| phosphoribosylformylglycinamidine cyclo-ligase [Mollicutes bacterium D7] gi|229383287|gb|EEO33378.1| phosphoribosylformylglycinamidine cyclo-ligase [Coprobacillus sp. D7] Length = 415 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I RK TQ+++A + AV+ +ENG ++ L EI+ D + Sbjct: 6 KVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENG-GLPNVEILSDLAALLEITVDEL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 G + + A +K K Sbjct: 65 LAGVEKELEGLSYSKAGV--DIAYSDAIKREMKQY 97 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 ++ +G + RK+KG++Q + L + +S +E G +P ++ + + + Sbjct: 1 MINVNKVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENGG-LPNVEILSDLAALLEI 59 Query: 168 HLDWIYFGDEVIVP------KSIKRAKGNQSSKKSKKDKKSSNP 205 +D + G E + + A + ++ K+ K+S+P Sbjct: 60 TVDELLAGVEKELEGLSYSKAGVDIAYSDAIKREMKQYLKTSDP 103 >gi|169349664|ref|ZP_02866602.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] gi|169293739|gb|EDS75872.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] Length = 206 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWIY 91 G RIK +RK TQ+++ +SA+ +EN + L +E+ + Sbjct: 3 GQRIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKETIQKLSEIFEVPATYFL 62 Query: 92 DGEVIDRRYEDVT 104 + ++ + Sbjct: 63 GIDETNQPTITNS 75 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDW 171 G R+K +RK+KG++Q + G LLG+ S ++ YE R + + +K+ ++ + + Sbjct: 1 MTGQRIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKETIQKLSEIFEVPATY 60 Query: 172 IYFGDEVIVP 181 DE P Sbjct: 61 FLGIDETNQP 70 >gi|194337612|ref|YP_002019406.1| helix-turn-helix domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194310089|gb|ACF44789.1| helix-turn-helix domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 359 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 27/74 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI+ R+A T + +A+ +E G+ + S L L + ++ + Sbjct: 2 IEHRIRQARQAAGLTLAALGAKIGVTHTAIQKYEKGIITPSSSILLKLAQACGVRTEYFF 61 Query: 92 DGEVIDRRYEDVTN 105 ++ + Sbjct: 62 RSHTVELVNPEFRK 75 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++ R+ G++ G +G+ ++ + YE+G P K+ Q ++ Sbjct: 1 MIEHRIRQARQAAGLTLAALGAKIGVTHTAIQKYEKGIITPSSSILLKLAQACGVRTEYF 60 Query: 173 Y 173 + Sbjct: 61 F 61 >gi|325662590|ref|ZP_08151190.1| hypothetical protein HMPREF0490_01930 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471087|gb|EGC74313.1| hypothetical protein HMPREF0490_01930 [Lachnospiraceae bacterium 4_1_37FAA] Length = 70 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++++R+ N+ +QK +A ++ + +E I Y + L Y++S D++ Sbjct: 5 ERMRNLRQDNDLSQKNVADMLGVAQTTYSQYELEKRPMPIDYLIALCKFYDVSADYML 62 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R++++R+D +SQ +LG+ +T S YE + I + + D+ Sbjct: 1 MNYAERMRNLRQDNDLSQKNVADMLGVAQTTYSQYELEKRPMPIDYLIALCKFYDVSADY 60 Query: 172 IY 173 + Sbjct: 61 ML 62 >gi|302387998|ref|YP_003823820.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198626|gb|ADL06197.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 93 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+++RK+ TQ+ +A + ++ E G+ S S + + ++ D++ Sbjct: 9 GARIQELRKSKGYTQEALAEAIDIDAKRISKIERGVISASYNDMILFSEFFGVTLDYLII 68 Query: 93 GEVIDRRYEDVTNKKRL 109 G+ D + + Sbjct: 69 GKRQDVDALKKRVQDAI 85 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 D + GAR++ +RK KG +Q + + + +S E+G + Sbjct: 1 MYYDQHVCGARIQELRKSKGYTQEALAEAIDIDAKRISKIERGVISASYNDMILFSEFFG 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAK 188 LD++ G V KR + Sbjct: 61 VTLDYLIIGKRQDVDALKKRVQ 82 >gi|300691939|ref|YP_003752934.1| transcription regulator protein [Ralstonia solanacearum PSI07] gi|299078999|emb|CBJ51660.1| putative transcription regulator protein [Ralstonia solanacearum PSI07] Length = 113 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R A +K+Q+ +A A+ + ++ E G+ + S+ + + ++ ++ Sbjct: 24 LGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K R SQ + + +S+ E+G P ++ I L ++ Sbjct: 26 KRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83 >gi|299067065|emb|CBJ38261.1| putative transcription regulator protein [Ralstonia solanacearum CMR15] Length = 113 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R A +K+Q+ +A A+ + ++ E G+ + S+ + + ++ ++ Sbjct: 24 LGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K R SQ + + +S+ E+G P ++ I L Sbjct: 22 IALGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSE 81 Query: 172 IY 173 ++ Sbjct: 82 LF 83 >gi|323342509|ref|ZP_08082741.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463621|gb|EFY08815.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 258 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 26/77 (33%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 +Q+ +A N +++ +E G SI + L I + + G+ Sbjct: 1 MSQEMLAEKLNISRQSISKWERGESLPSIDNLIRLSEILGIPLNDLVKGKESFPIPFRFG 60 Query: 105 NKKRLDPYAIGARLKSI 121 + + L ++ Sbjct: 61 QNTTKIFFVVFVFLTAL 77 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 MSQ + L + ++S +E+G ++P I ++ ++ L+ + G E Sbjct: 1 MSQEMLAEKLNISRQSISKWERGESLPSIDNLIRLSEILGIPLNDLVKGKES 52 >gi|255029672|ref|ZP_05301623.1| DNA-binding protein [Listeria monocytogenes LO28] Length = 68 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK N TQK++A S ++ +EN I L + D++ Sbjct: 5 EFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFL 64 Query: 91 YDG 93 D Sbjct: 65 LDD 67 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G +L +RK ++Q + +G ST+S YE P I K+ ++ Sbjct: 1 MGVLEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTT 60 Query: 169 LDWIY 173 D++ Sbjct: 61 TDFLL 65 >gi|254456421|ref|ZP_05069850.1| transcription regulator [Candidatus Pelagibacter sp. HTCC7211] gi|207083423|gb|EDZ60849.1| transcription regulator [Candidatus Pelagibacter sp. HTCC7211] Length = 123 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 2/106 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G ++K R A TQ ++A N + +E G S L L N + Sbjct: 2 EDNFNKHLGNKLKLRRLALGLTQTKVAKAINVTFQQIQKYEKGTNGVSSIRLLQLSNYLK 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + ++ + E ++ + L + + Q Sbjct: 62 VPINYFF--EDFSEYLINLEKSQEGHMNVNYNFLTKLYSELNTDQK 105 Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + +G +LK R G++Q + K + + + YE+G ++ Sbjct: 1 MEDNFNKHLGNKLKLRRLALGLTQTKVAKAINVTFQQIQKYEKGTNGVSSIRLLQLSNYL 60 Query: 166 KKHLDWIY 173 K +++ + Sbjct: 61 KVPINYFF 68 >gi|206972608|ref|ZP_03233551.1| DNA-binding protein [Bacillus cereus AH1134] gi|206732510|gb|EDZ49689.1| DNA-binding protein [Bacillus cereus AH1134] Length = 67 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S S + + + +S + + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIEELMP 66 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ RK KG +Q F K LG+ S L E+G P ++ + ++ + Sbjct: 8 RRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIEELM 65 >gi|116748595|ref|YP_845282.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697659|gb|ABK16847.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 204 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 49/126 (38%), Gaps = 17/126 (13%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R+ N+ T +++A+ + ++ EN + L +++ Sbjct: 17 NIGNKVRELRQKNHLTLQDLAVKTGLSKPFLSQIENNKVVPPVATLFRLARALKVALGHF 76 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + V D R K+ +R D+ Q + G+ + + E + Sbjct: 77 FQESVEDDRIAITRKKE------------RVRLDRRPHQEK-----GLVHYIYTALETKK 119 Query: 151 TIPEIK 156 + ++ Sbjct: 120 SNKSME 125 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 34/90 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + IG +++ +R+ ++ + G+ LS E + +P + ++ + K L Sbjct: 16 FNIGNKVRELRQKNHLTLQDLAVKTGLSKPFLSQIENNKVVPPVATLFRLARALKVALGH 75 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + +I R K + +K Sbjct: 76 FFQESVEDDRIAITRKKERVRLDRRPHQEK 105 >gi|327396677|dbj|BAK14098.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355] Length = 203 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 17/129 (13%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 + L+ + ++ ++G R+K IRK+ N T KE+A AN A++ E + + ++R Sbjct: 4 KTALMHSEDLSAVEINIGVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRV 63 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 LR + + + R + ++ R+ Sbjct: 64 LEQLRVVLNVPLTAFLEQHEVMRPGAE-------------HYVRRWRERPHFQVG----K 106 Query: 136 LGMPNSTLS 144 G+ LS Sbjct: 107 HGISKEMLS 115 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK IRK + M+ E + + +S E+ P ++ +++ V L E Sbjct: 24 LKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRVLEQLRVVLNVPLTAFLEQHE 83 Query: 178 VIVP 181 V+ P Sbjct: 84 VMRP 87 >gi|229009199|ref|ZP_04166503.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] gi|228752072|gb|EEM01795.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] Length = 415 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 7/140 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI +R T E++ G + +++ ENG + S+ ++ ++ ++ Sbjct: 6 ELGKRINKLRVEKGMTLVELS-GNKMSKGMLSMIENGHSNPSMDSLKFIAHQLGCDPQYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI-----EFGKLLGMPNSTLSN 145 D + ++ ++ + Q E ++L + T+ Sbjct: 65 LGSPTSDELKHLFNKVEEAFEKNNDEQIINL-THDMLDQQFPISFESARILEISGRTVVK 123 Query: 146 YEQGRTIPEIKPARKIKQVT 165 EQ R I+ A I + Sbjct: 124 SEQKRGEMLIERAVAIYERL 143 Score = 41.1 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L +G R+ +R +KGM+ +E M LS E G + P + + I Sbjct: 1 MLKMNELGKRINKLRVEKGMTLVELSGN-KMSKGMLSMIENGHSNPSMDSLKFIAHQLGC 59 Query: 168 HLDWIY 173 ++ Sbjct: 60 DPQYLL 65 >gi|223983971|ref|ZP_03634129.1| hypothetical protein HOLDEFILI_01410 [Holdemania filiformis DSM 12042] gi|223964047|gb|EEF68401.1| hypothetical protein HOLDEFILI_01410 [Holdemania filiformis DSM 12042] Length = 179 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK +R NN T +E+A + ++ E + S SI + + Sbjct: 2 DIGYRIKQLRTKNNLTLEELASRCELTKGFLSQLERNLTSPSIATLQDIVEALGTTLAKF 61 Query: 91 YDGEVIDRRYEDVTNK 106 + E ++ + Sbjct: 62 FQEETEEKLVFTDDDY 77 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R ++ E + LS E+ T P I + I + L Sbjct: 1 MDIGYRIKQLRTKNNLTLEELASRCELTKGFLSQLERNLTSPSIATLQDIVEALGTTLAK 60 Query: 172 IYFGD 176 + + Sbjct: 61 FFQEE 65 >gi|219856265|ref|YP_002473387.1| hypothetical protein CKR_2922 [Clostridium kluyveri NBRC 12016] gi|219569989|dbj|BAH07973.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 108 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 D+G R+ +RK + +Q ++AI N + +N E G SI + + + I+ Sbjct: 4 IMIDIGNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAKPSIDLLIKICEFFSITL 63 Query: 88 DWIYDGEVIDRRYEDVTNKKRL 109 ++ K L Sbjct: 64 SEFFNNGNNSEPVILNPQLKEL 85 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +RK +SQ + L + +T++ E+G P I KI + L + Sbjct: 14 KLRKLHKISQNKLAISLNVAAATINKIEKGTAKPSIDLLIKICEFFSITLSEFF 67 >gi|188587862|ref|YP_001920327.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188498143|gb|ACD51279.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 179 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +R TQ+E+A + ++ EN + S SI + + + + Sbjct: 2 QIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + + D + L + Sbjct: 62 FSETKEEQVIFSNDDMFKTDDEELKYSLMWL 92 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R +K ++Q E + +S E T P I I ++ +L+ Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|187933000|ref|YP_001885196.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|187721153|gb|ACD22374.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] Length = 179 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +R TQ+E+A + ++ EN + S SI + + + + Sbjct: 2 QIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + + D + L + Sbjct: 62 FSETKEEQVIFSNDDMFKTDDEELKYSLMWL 92 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R +K ++Q E + +S E T P I I ++ +L+ Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|314933295|ref|ZP_07840660.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae C87] gi|313653445|gb|EFS17202.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae C87] Length = 179 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R+ N TQ+E+A + + ++ E+ S S+ L + S Sbjct: 2 NIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSASDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ D Y G L + Sbjct: 62 FQESPSKKVLYKKKDQITYDEYDRGYILNWL 92 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R+ K ++Q E + + +S E P ++ I +V Sbjct: 1 MNIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSASD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 + E K + + K Sbjct: 61 FF--QESPSKKVLYKKKDQ 77 >gi|296127941|ref|YP_003635191.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296019756|gb|ADG72992.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 488 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R A T ++ + S V++ ENG + + + + Sbjct: 19 LGRRVRHLRTARGMTLDDLGRAIGRAPSQVSMLENGHREPKLSLLAQVAEALGVELGDLL 78 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E RR +R + A L Sbjct: 79 STEPPTRRAALEVELERAQRGPLFASL 105 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G R++ +R +GM+ + G+ +G S +S E G P++ ++ + Sbjct: 14 VDTLVLGRRVRHLRTARGMTLDDLGRAIGRAPSQVSMLENGHREPKLSLLAQVAEALGVE 73 Query: 169 LDWIYFGD 176 L + + Sbjct: 74 LGDLLSTE 81 >gi|295115097|emb|CBL35944.1| Predicted transcriptional regulators [butyrate-producing bacterium SM4/1] Length = 107 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 29/80 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ ++G R+K R+ + TQ+ +A S ++ EN S L Sbjct: 1 MKSPDHELGYRLKAARENRHLTQERLAEMVGIAASYLSEIENKRTVPSFNVLSSLCQTLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 +S D + D+ Sbjct: 61 VSLDDLIFHTESDQIESITR 80 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +G RLK+ R+++ ++Q +++G+ S LS E RT+P + Q LD Sbjct: 6 HELGYRLKAARENRHLTQERLAEMVGIAASYLSEIENKRTVPSFNVLSSLCQTLNVSLDD 65 Query: 172 IYFGDEVIVPKSIKR 186 + F E +SI R Sbjct: 66 LIFHTESDQIESITR 80 >gi|251790395|ref|YP_003005116.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247539016|gb|ACT07637.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + G R+K +R +TQK++A S N +E+GM + L + Sbjct: 2 QTEEQRRAFGQRLKALRNQQRRTQKDIAARIGVQLSQYNKYESGMHIPPADKLIQLSELF 61 Query: 84 EISFDWIYDGEVIDRRYEDVT 104 + D + G + T Sbjct: 62 STTIDHLLRGSHDELAPISNT 82 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G RLK++R + +Q + +G+ S + YE G IP ++ ++ +D + Sbjct: 9 AFGQRLKALRNQQRRTQKDIAARIGVQLSQYNKYESGMHIPPADKLIQLSELFSTTIDHL 68 Query: 173 YFG 175 G Sbjct: 69 LRG 71 >gi|251778801|ref|ZP_04821721.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083116|gb|EES49006.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 179 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +R TQ+E+A + ++ EN + S SI + + + + Sbjct: 2 QIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + + D + L + Sbjct: 62 FSETKEEQVIFSNNDMFKTDDEELKYSLMWL 92 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R +K ++Q E + +S E T P I I ++ +L+ Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|325289095|ref|YP_004265276.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964496|gb|ADY55275.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 272 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 1/80 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY-D 92 I RK TQ+E+A N+ A++ +E G S I L + + Sbjct: 6 QNISKYRKMRGFTQEELAQKLNRSSQAISKWETGQSSPDISLLPDLAFALGTDINSLMGY 65 Query: 93 GEVIDRRYEDVTNKKRLDPY 112 + ++ D Y Sbjct: 66 VYDKKKITIYEDEYRQEDYY 85 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A+ + RK +G +Q E + L + +S +E G++ P+I + ++ Sbjct: 1 MNALVQNISKYRKMRGFTQEELAQKLNRSSQAISKWETGQSSPDISLLPDLAFALGTDIN 60 Query: 171 WIY 173 + Sbjct: 61 SLM 63 >gi|315611993|ref|ZP_07886911.1| conserved domain protein [Streptococcus sanguinis ATCC 49296] gi|315315982|gb|EFU64016.1| conserved domain protein [Streptococcus sanguinis ATCC 49296] Length = 68 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK++R K Q++ K L + T N+E+G+T P + A +I +D I Sbjct: 1 MPKMTLKTLRTLKNWRQVDAAKALDVSADTWGNWERGKTEPTVTQAYQIATTFDVSIDDI 60 Query: 173 YF 174 F Sbjct: 61 IF 62 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K +R N Q + A + +E G ++ A + +++S D I Sbjct: 6 LKTLRTLKNWRQVDAAKALDVSADTWGNWERGKTEPTVTQAYQIATTFDVSIDDIIF 62 >gi|303239088|ref|ZP_07325618.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593426|gb|EFL63144.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 67 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K+VG I+ R +Q+E+A A + ++ ENG + S+ + + Sbjct: 3 IRKEVGQNIRKERDRKRMSQEELAGLAGTTQEYISRIENGTRNPSMDLLYNIAGALKCPV 62 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 19/54 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ R K MSQ E L G +S E G P + I K + Sbjct: 9 QNIRKERDRKRMSQEELAGLAGTTQEYISRIENGTRNPSMDLLYNIAGALKCPV 62 >gi|261253380|ref|ZP_05945953.1| DNA-binding protein [Vibrio orientalis CIP 102891] gi|260936771|gb|EEX92760.1| DNA-binding protein [Vibrio orientalis CIP 102891] Length = 182 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 35/95 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTR K +R+ +Q+E+A A ++ EN S S+ L ++ S + Sbjct: 5 IGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSMAEFF 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + +++ + + + G Sbjct: 65 AIDDPQPEQFYTRKEEQPEIGQGEISYRQVGHFHG 99 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R K++R+ G+SQ E K G+ N +S E P + K+ + Sbjct: 4 AIGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSMAEF 63 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + D+ + R + + + + Sbjct: 64 FAIDDPQPEQFYTRKEEQPEIGQGEISYR 92 >gi|163938083|ref|YP_001642967.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229165063|ref|ZP_04292859.1| Transcriptional regulator Xre [Bacillus cereus AH621] gi|163860280|gb|ABY41339.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228618448|gb|EEK75477.1| Transcriptional regulator Xre [Bacillus cereus AH621] Length = 67 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S S + + + +S D + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKTLNVSIDELMP 66 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ RK KG +Q F K LG+ S L E+G P ++ + +D + Sbjct: 8 RRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKTLNVSIDELM 65 >gi|254249104|ref|ZP_04942424.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124875605|gb|EAY65595.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 109 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +R+A +Q+++A A S V E G SI A + +++S + Sbjct: 44 FGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 103 Query: 92 DGEV 95 G Sbjct: 104 PGAY 107 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + GA ++ +R+ + SQ + + G+ S + E+G I I A KI + + Sbjct: 42 HHFGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSIST 101 Query: 172 IYFG 175 + G Sbjct: 102 LLPG 105 >gi|222054633|ref|YP_002536995.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563922|gb|ACM19894.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 209 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ +G RIK+IR+A + TQKE A ++ ++ E G + S + L + Y Sbjct: 3 EKEMNCRMGLRIKEIRQAKDMTQKEFADSLGIVQGFLSGVERGKKNVSDTLIIALCHSYG 62 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKR 108 I+ +W+ G R + + Sbjct: 63 INKEWLKTGYGEKFRELQIEASRP 86 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K IR+ K M+Q EF LG+ LS E+G+ + + +W+ G Sbjct: 14 IKEIRQAKDMTQKEFADSLGIVQGFLSGVERGKKNVSDTLIIALCHSYGINKEWLKTG 71 >gi|89893376|ref|YP_516863.1| hypothetical protein DSY0630 [Desulfitobacterium hafniense Y51] gi|219666666|ref|YP_002457101.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332824|dbj|BAE82419.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536926|gb|ACL18665.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 73 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 34/69 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+++R+ + TQ ++A N ++ + +E G + ++ + + + S D++ + Sbjct: 3 ERIRNMREDMDMTQSQIAEHLNIHQTTYSDYEIGKLNIPVQVLGKIADLFGTSIDYLVNR 62 Query: 94 EVIDRRYED 102 + + Y Sbjct: 63 TDVKKPYPR 71 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 38/73 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++++R+D M+Q + + L + +T S+YE G+ ++ KI + +D++ Sbjct: 1 MYERIRNMREDMDMTQSQIAEHLNIHQTTYSDYEIGKLNIPVQVLGKIADLFGTSIDYLV 60 Query: 174 FGDEVIVPKSIKR 186 +V P ++ Sbjct: 61 NRTDVKKPYPRRK 73 >gi|160915490|ref|ZP_02077701.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] gi|158432610|gb|EDP10899.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] Length = 110 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 27/66 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +RK +Q + ++ +ENG +++ L ++ + + Sbjct: 15 EKLKAVRKQKGLSQAALGKLLGVQTQTISNWENGKSEPNLKTINKLCEALDVPLRYFINE 74 Query: 94 EVIDRR 99 E +D + Sbjct: 75 ERVDYQ 80 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 45/90 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK++RK KG+SQ GKLLG+ T+SN+E G++ P +K K+ + L + Sbjct: 11 IMFNEKLKAVRKQKGLSQAALGKLLGVQTQTISNWENGKSEPNLKTINKLCEALDVPLRY 70 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + V +++ A ++ D K Sbjct: 71 FINEERVDYQLTLEEAFVINKYRELNDDGK 100 >gi|154496785|ref|ZP_02035481.1| hypothetical protein BACCAP_01078 [Bacteroides capillosus ATCC 29799] gi|150274037|gb|EDN01137.1| hypothetical protein BACCAP_01078 [Bacteroides capillosus ATCC 29799] Length = 94 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G IK +R+ +Q +A N SAVN +E G+ + +Y + + + +S D+ Sbjct: 2 IGDTIKRLREDAGFSQSALAKKLNVTRSAVNAWEMGLSVPTTQYVVDIAKLFRVSADY 59 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K +R+D G SQ K L + S ++ +E G ++P + I ++ + D+ Sbjct: 1 MIGDTIKRLREDAGFSQSALAKKLNVTRSAVNAWEMGLSVPTTQYVVDIAKLFRVSADY 59 >gi|222054124|ref|YP_002536486.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563413|gb|ACM19385.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 196 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 31/70 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +R+ T +E+A + ++ EN + + L + ++ + Sbjct: 12 KLGEKIRKLRQEQRHTLQELADVTGLSKPLLSQIENDQVTPPLATLLRIAKGLKVGIHYF 71 Query: 91 YDGEVIDRRY 100 ++ E +++ Sbjct: 72 FEEEGDRQKF 81 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 33/81 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R+++ + E + G+ LS E + P + +I + K + + + Sbjct: 15 EKIRKLRQEQRHTLQELADVTGLSKPLLSQIENDQVTPPLATLLRIAKGLKVGIHYFFEE 74 Query: 176 DEVIVPKSIKRAKGNQSSKKS 196 + + R SS++ Sbjct: 75 EGDRQKFVLTRGGDGPSSRRR 95 >gi|110637230|ref|YP_677437.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279911|gb|ABG58097.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 79 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 E ++ K +G R+ ++R+ +Q ++A N+ A+ E+G + +I + Sbjct: 7 CGVEKQEVQKRIGLRVIELREHKGWSQSDLARACNKDRQAIEKIESGKVNPTIFSLYEIA 66 Query: 81 NEYEISF 87 +S Sbjct: 67 IALGVSL 73 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 18/50 (36%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +R+ KG SQ + + + E G+ P I +I L Sbjct: 24 ELREHKGWSQSDLARACNKDRQAIEKIESGKVNPTIFSLYEIAIALGVSL 73 >gi|78043854|ref|YP_360727.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995969|gb|ABB14868.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 107 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +IK +R+ ++KE+A A++ +EN + I + E+ +S +++ Sbjct: 5 NKIKKLREERKMSRKELADKLQISYWALSKYENNERTPDITLLRKIAQEFGVSIEYL 61 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +R+++ MS+ E L + LS YE P+I RKI Q +++ Sbjct: 1 MSGINKIKKLREERKMSRKELADKLQISYWALSKYENNERTPDITLLRKIAQEFGVSIEY 60 Query: 172 IY-FGDEVIVPKS 183 + DE ++P + Sbjct: 61 LAGLSDENLLPST 73 >gi|282866826|ref|ZP_06275862.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558318|gb|EFB63884.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 509 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 EDDYLVRIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + L S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|256957267|ref|ZP_05561438.1| predicted protein [Enterococcus faecalis DS5] gi|256947763|gb|EEU64395.1| predicted protein [Enterococcus faecalis DS5] Length = 269 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 43 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 102 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 103 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKI 152 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYE 147 +I Y+ + K + +GAR++ RK K + +G+ + ST+SN+E Sbjct: 21 YILRTPYPHIYYKRSVSMK-ITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWE 79 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 G +P + +KI + +DW+ +GD Sbjct: 80 LGLNLPNKRYLKKIAKACDTTVDWLLYGD 108 >gi|253581969|ref|ZP_04859193.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251836318|gb|EES64855.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 181 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 32/83 (38%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 EI + + + R++++R+ Q ++A S+ +E S+ L + Sbjct: 2 EIEKQYITLAQRLRELREEKGLLQLKVAEALEIPRSSYQGYETASKRLSLEALDKLAFYF 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNK 106 +S D++ I Y + Sbjct: 62 NVSIDYLLGRTDIRSPYPYNDEE 84 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL+ +R++KG+ Q++ + L +P S+ YE ++ K+ +D Sbjct: 7 YITLAQRLRELREEKGLLQLKVAEALEIPRSSYQGYETASKRLSLEALDKLAFYFNVSID 66 Query: 171 WIYFGDEVIVP 181 ++ ++ P Sbjct: 67 YLLGRTDIRSP 77 >gi|228994857|ref|ZP_04154652.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764882|gb|EEM13641.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 64 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K IR TQ E+A N + L E G + S++ + + ++ + ++ E Sbjct: 4 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLFWEE 63 Query: 95 V 95 Sbjct: 64 D 64 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K IR +KGM+Q E KL + T+ E+G P +K +I + L+ +++ ++ Sbjct: 5 VKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLFWEED 64 >gi|296139176|ref|YP_003646419.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027310|gb|ADG78080.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 171 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 DVG R++++R + E+A A + +++ E G + ++ L ++ Sbjct: 4 PDVGGRLRELRSERGLSLSELARRAGVGKGSLSEIEAGGRNPTVETLYSLCGPLDVPLTA 63 Query: 90 IY 91 + Sbjct: 64 LL 65 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R ++G+S E + G+ +LS E G P ++ + L + Sbjct: 10 LRELRSERGLSLSELARRAGVGKGSLSEIEAGGRNPTVETLYSLCGPLDVPLTALL 65 >gi|225419785|ref|ZP_03762088.1| hypothetical protein CLOSTASPAR_06123 [Clostridium asparagiforme DSM 15981] gi|225041568|gb|EEG51814.1| hypothetical protein CLOSTASPAR_06123 [Clostridium asparagiforme DSM 15981] Length = 264 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 38/90 (42%) Query: 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 + + + + + +G RI+ RKA T +++A ++ ++V+ +ENG + + Sbjct: 15 FNETLGGLMSKVSEHIGGRIRMYRKAREMTLQQLADSIHKSRASVSKYENGEITLDVETL 74 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 + +S + D + + + Sbjct: 75 FEIAQVLMVSPSQLMDVRPPMPKSAETSPN 104 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ RK + M+ + + +++S YE G +++ +I QV + Sbjct: 34 IRMYRKAREMTLQQLADSIHKSRASVSKYENGEITLDVETLFEIAQVLMVSPSQLM 89 >gi|167737542|ref|ZP_02410316.1| DNA-binding protein [Burkholderia pseudomallei 14] Length = 187 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 39/83 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEGR 64 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 ++ RA S ++ ++ Sbjct: 65 DRELITVTRASERTSMGRASSER 87 >gi|167772023|ref|ZP_02444076.1| hypothetical protein ANACOL_03397 [Anaerotruncus colihominis DSM 17241] gi|167665821|gb|EDS09951.1| hypothetical protein ANACOL_03397 [Anaerotruncus colihominis DSM 17241] Length = 75 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 27/69 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R+ ++ +Q ++ + L+E G + L + Y S D++ Sbjct: 7 RRLRELREDHDYSQADIGKRLGMSKQQYFLYEKGYRDIPTPVLIALADLYGTSVDYLVGR 66 Query: 94 EVIDRRYED 102 + Sbjct: 67 TDNPSPPQR 75 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ +R+D SQ + GK LGM YE+G + + +D++ Sbjct: 5 YYRRLRELREDHDYSQADIGKRLGMSKQQYFLYEKGYRDIPTPVLIALADLYGTSVDYLV 64 Query: 174 FGDEVIVP 181 + P Sbjct: 65 GRTDNPSP 72 >gi|124516094|gb|EAY57603.1| putative transcriptional regulator, XRE family [Leptospirillum rubarum] Length = 121 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R N +Q A + ++ FE+G S+ + L ++++ DW+ Sbjct: 16 LGARIRHLRG--NMSQTAFAELLGIRQEEISRFESGSRVPSVELLVRLSGIHKVTLDWLV 73 Query: 92 DG 93 G Sbjct: 74 MG 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 DP +GAR++ +R MSQ F +LLG+ +S +E G +P ++ ++ + K L Sbjct: 12 DPLGLGARIRHLRG--NMSQTAFAELLGIRQEEISRFESGSRVPSVELLVRLSGIHKVTL 69 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKS 196 DW+ G S++ +K Sbjct: 70 DWLVMGGTSGGEGSVREEDTPLPQEKK 96 >gi|160899167|ref|YP_001564749.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364751|gb|ABX36364.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 63 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R +G SQ LLG+ T++ E GR P + A I +V + ++ I+ Sbjct: 1 MKNTIRELRAQRGWSQAALADLLGVSRQTVNAIETGRYDPSLPLAFAIARVFETRIEAIF 60 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I+++R +Q +A VN E G S+ A + +E + I+ Sbjct: 5 IRELRAQRGWSQAALADLLGVSRQTVNAIETGRYDPSLPLAFAIARVFETRIEAIFQ 61 >gi|306831700|ref|ZP_07464857.1| prophage Sa05 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978639|ref|YP_004288355.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426125|gb|EFM29240.1| prophage Sa05 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178567|emb|CBZ48611.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 147 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +K++R TQ+E+A AV+ +E G + L E+ IS + + Sbjct: 2 EIQEVLKNLRDKYQLTQEELAARVLVTRQAVSRWETGETQPNTDTLKLLSKEFNISINTL 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK++R ++Q E + + +S +E G T P + + + ++ Sbjct: 1 MEIQEVLKNLRDKYQLTQEELAARVLVTRQAVSRWETGETQPNTDTLKLLSKEFNISINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|240171997|ref|ZP_04750656.1| transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length = 174 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R+ T +++A +S ++ E G + SI AL + ++ ++ E Sbjct: 5 LRAVRRHRGLTLEQLAEQTGLTKSYLSKIERGHSTPSIAVALKVSRALDVDVGRLFSDET 64 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 37/74 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + A L+++R+ +G++ + + G+ S LS E+G + P I A K+ + + ++ Sbjct: 1 MTALLRAVRRHRGLTLEQLAEQTGLTKSYLSKIERGHSTPSIAVALKVSRALDVDVGRLF 60 Query: 174 FGDEVIVPKSIKRA 187 + ++ RA Sbjct: 61 SDETAQEKITVDRA 74 >gi|237731580|ref|ZP_04562061.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907119|gb|EEH93037.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 191 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+ R++ + E+A A + ++ E G S + L + Sbjct: 5 EDSINQRISARIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAFG 64 Query: 85 ISFDWIY 91 IS + Sbjct: 65 ISMSTLI 71 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R+ +G S E + G+ + + E+G + P ++ + + Sbjct: 14 ARIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSTLIAR 73 Query: 176 DEVIVPKSIK 185 E+ K ++ Sbjct: 74 AEMQEGKLLR 83 >gi|226362101|ref|YP_002779879.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240586|dbj|BAH50934.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 186 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 VG +I+ +RK T +++ + V+ E G+ + S L + +I Sbjct: 1 MTTVGNKIRTMRKEKGLTLAQLSDITGLSPAIVSQIERGLANPSFTTLAQLAHGLDIPVG 60 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 + G+ +++R Sbjct: 61 RFFIGQPDTTSPVVRKHERR 80 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 35/84 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++++RK+KG++ + + G+ + +S E+G P ++ + + G Sbjct: 6 NKIRTMRKEKGLTLAQLSDITGLSPAIVSQIERGLANPSFTTLAQLAHGLDIPVGRFFIG 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 +++ + +KK Sbjct: 66 QPDTTSPVVRKHERRNLVGVTKKS 89 >gi|260881164|ref|ZP_05403762.2| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849680|gb|EEX69687.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 121 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 RQY ++K++R+ NN +Q ++A + + A ++E G I + L Sbjct: 47 GKTRRQYSSIWAKQLKELRERNNLSQADVAKVLHCSQVAYGMYELGKRKLPIERLIMLAE 106 Query: 82 EYEISFDWI 90 Y +S D + Sbjct: 107 FYHVSLDSL 115 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 ++ + E +R +LK +R+ +SQ + K+L YE G+ Sbjct: 37 DMAQCQSERDGKTRRQYSSIWAKQLKELRERNNLSQADVAKVLHCSQVAYGMYELGKRKL 96 Query: 154 EIKPARKIKQVTKKHLDWI 172 I+ + + LD + Sbjct: 97 PIERLIMLAEFYHVSLDSL 115 >gi|167768389|ref|ZP_02440442.1| hypothetical protein CLOSS21_02946 [Clostridium sp. SS2/1] gi|167709913|gb|EDS20492.1| hypothetical protein CLOSS21_02946 [Clostridium sp. SS2/1] gi|291560359|emb|CBL39159.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 105 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ GT IK IR+ TQ ++A ++ EN + S+R Y S D Sbjct: 4 ENYGTHIKHIRQKMGLTQNQVAEALGVTPGYISNVENNRTAMSLRILTYYAKLCGCSLDS 63 Query: 90 IYDGEVIDRRYEDVTNK-----KRLDPYAIGARLKSI 121 + + + + +LD LK+I Sbjct: 64 LVGTLDPEYSETALDRELYNAIMQLDVDTKEKLLKTI 100 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ G +K IR+ G++Q + + LG+ +SN E RT ++ ++ Sbjct: 1 MNSENYGTHIKHIRQKMGLTQNQVAEALGVTPGYISNVENNRTAMSLRILTYYAKLCGCS 60 Query: 169 LDWIY 173 LD + Sbjct: 61 LDSLV 65 >gi|70731387|ref|YP_261128.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68345686|gb|AAY93292.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 65 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++++R +Q E+A VN E G S+ A + +E+ + I+ Sbjct: 3 NQLRELRTRQGWSQAELATRLEVSRQTVNAIETGRYDPSLPLAFKIARAFEMPIESIFSP 62 Query: 94 EVI 96 + Sbjct: 63 DED 65 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +L+ +R +G SQ E L + T++ E GR P + A KI + + ++ I+ Sbjct: 1 MNNQLRELRTRQGWSQAELATRLEVSRQTVNAIETGRYDPSLPLAFKIARAFEMPIESIF 60 Query: 174 FGDEV 178 DE Sbjct: 61 SPDED 65 >gi|329890393|ref|ZP_08268736.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845694|gb|EGF95258.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 476 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G R+K +R+ + +Q MA S +N E S + L L Y++ Sbjct: 11 LGGRLKRLRRELDLSQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVDL 66 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 LK +R++ +SQ LG+ S L++ E+ + + ++ + L Sbjct: 15 LKRLRRELDLSQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVDL 66 >gi|291438420|ref|ZP_06577810.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291341315|gb|EFE68271.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 449 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 11/128 (8%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + R + +G R++ +R TQK++A + V+ E+G S +L Sbjct: 1 MGVAERDDPETIGRRVQKLRVERGLTQKQLAEPV-YTPAYVSTLESGRVRPSDDALRHLA 59 Query: 81 NEYEISFDWIYDGEVIDR----------RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + ++FD + G + + L + + G+++ Sbjct: 60 DRLGVAFDELATGRSARLVTELRLRLTGAQRTLAAGEAEAAVEEYTGLLAEAEAHGLAEE 119 Query: 131 EFGKLLGM 138 LLG+ Sbjct: 120 RAAALLGL 127 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 DP IG R++ +R ++G++Q + + + + +S E GR P R + Sbjct: 8 DPETIGRRVQKLRVERGLTQKQLAEPVY-TPAYVSTLESGRVRPSDDALRHLADRLGVAF 66 Query: 170 DWIYFG 175 D + G Sbjct: 67 DELATG 72 >gi|229164709|ref|ZP_04292573.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803] gi|228618789|gb|EEK75751.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803] Length = 421 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK++RK TQ+++A G S ++ E G+ S L N+ S + + Sbjct: 2 LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDFF 60 Query: 92 D 92 D Sbjct: 61 D 61 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 4/85 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+K +RK K ++Q + + + S LS E+G P + + ++ Sbjct: 1 MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSK 197 + +V+ K + ++ + K ++ Sbjct: 60 F---DVVENKELTLSQIKKDIKAAE 81 >gi|257125192|ref|YP_003163306.1| XRE family transcriptional regulator [Leptotrichia buccalis C-1013-b] gi|257049131|gb|ACV38315.1| transcriptional regulator, XRE family [Leptotrichia buccalis C-1013-b] Length = 255 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++KD+R NN TQ+E+A + +E G L L + ++IS D Sbjct: 2 KINEKLKDLRLKNNMTQRELAEKLGISIPTLQKYEYGTLKIKNEVILSLCDIFDISPDDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + D E K LD + +K + Sbjct: 62 FNEKRNDIFKETDNLLKELDKFKNTDIIKEL 92 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +LK +R M+Q E + LG+ TL YE G + + + + D Sbjct: 1 MKINEKLKDLRLKNNMTQRELAEKLGISIPTLQKYEYGTLKIKNEVILSLCDIFDISPDD 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|320334222|ref|YP_004170933.1| XRE family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755511|gb|ADV67268.1| transcriptional regulator, XRE family [Deinococcus maricopensis DSM 21211] Length = 64 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R TQ ++A + VN E G S+ A + + + + I+ Sbjct: 3 NRIRVLRTERGWTQADLANHLDVSRQTVNALETGRYDPSLPLAFRIARTFALPLEAIFTP 62 Query: 94 EV 95 + Sbjct: 63 DD 64 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R ++G +Q + L + T++ E GR P + A +I + L+ I+ Sbjct: 1 MNNRIRVLRTERGWTQADLANHLDVSRQTVNALETGRYDPSLPLAFRIARTFALPLEAIF 60 Query: 174 FGDE 177 D+ Sbjct: 61 TPDD 64 >gi|311279673|ref|YP_003941904.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748868|gb|ADO48620.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 191 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +G RI+ R++ + + E+A A + ++ E G S + L + Sbjct: 5 EDTLNARIGARIRIERESRSWSLSELADRAGVSRTMIHKIERGDSSPTATMLGRLSGAFG 64 Query: 85 ISFDWIY 91 IS + Sbjct: 65 ISMSTLI 71 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R+ + S E G+ + + E+G + P ++ + + Sbjct: 14 ARIRIERESRSWSLSELADRAGVSRTMIHKIERGDSSPTATMLGRLSGAFGISMSTLIAR 73 Query: 176 DEVIVPKSIKRA 187 E+ K ++ A Sbjct: 74 AEMQEGKLLRFA 85 >gi|222825162|dbj|BAH22319.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 115 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 33/109 (30%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +++ +G +IK +R TQ E+ + +ENG L I Sbjct: 3 KEWKVQLGKKIKQLRLDRGLTQTELGKRIGVSYRQIQRYENGSNYILASRLYDLAKALSI 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 + G D +L + K +R + F + Sbjct: 63 DVADFFTGMHTDSHEAYDEEILKLVKGYNEIKSKRLRSVVYILVKSFSQ 111 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 5/87 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K +R D+G++Q E GK +G+ + YE G + + + + G Sbjct: 11 KKIKQLRLDRGLTQTELGKRIGVSYRQIQRYENGSNYILASRLYDLAKALSIDVADFFTG 70 Query: 176 D-----EVIVPKSIKRAKGNQSSKKSK 197 E + +K KG K + Sbjct: 71 MHTDSHEAYDEEILKLVKGYNEIKSKR 97 >gi|254931138|ref|ZP_05264497.1| transcriptional regulator [Listeria monocytogenes HPB2262] gi|293582686|gb|EFF94718.1| transcriptional regulator [Listeria monocytogenes HPB2262] Length = 140 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +R+ N TQ+++A N ++ +E L Y +S +I Sbjct: 2 FGDRLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYIL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 +E +R + + Sbjct: 62 GETDKKHYWELNDKDERSIQKDLQKMI 88 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 37/86 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RL+S+R++K ++Q + L + LSNYE+ + P+ + +K+ + +I Sbjct: 1 MFGDRLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYI 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + K +K Sbjct: 61 LGETDKKHYWELNDKDERSIQKDLQK 86 >gi|76809409|ref|YP_332574.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|167823130|ref|ZP_02454601.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167909924|ref|ZP_02497015.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|226194494|ref|ZP_03790092.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254190850|ref|ZP_04897357.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254260931|ref|ZP_04951985.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] gi|76578862|gb|ABA48337.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|157938525|gb|EDO94195.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|225933579|gb|EEH29568.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254219620|gb|EET09004.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] Length = 187 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 39/83 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK KG + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEGR 64 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 ++ RA S ++ ++ Sbjct: 65 DRELITVTRASERTSMGRASSER 87 >gi|332285621|ref|YP_004417532.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] gi|330429574|gb|AEC20908.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] Length = 187 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K +R+ + ++++ +S ++ E G+ SI L L YEI + Sbjct: 3 EISFRLKALRRQYQFSLEQLSQRTGLTKSYLSKLERGVSEPSISTVLKLAQAYEIGVSQL 62 Query: 91 Y----DGEVIDRRYEDVTNKKRLD 110 GE ++ LD Sbjct: 63 IGTGEGGESEAISVVRRNEREPLD 86 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK++R+ S + + G+ S LS E+G + P I K+ Q + + + E Sbjct: 8 LKALRRQYQFSLEQLSQRTGLTKSYLSKLERGVSEPSISTVLKLAQAYEIGVSQLIGTGE 67 Query: 178 VIVPKSIKRAKGNQ 191 ++I + N+ Sbjct: 68 GGESEAISVVRRNE 81 >gi|317497673|ref|ZP_07955988.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895007|gb|EFV17174.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 105 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 5/97 (5%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ GT IK IR+ TQ ++A ++ EN + S+R Y S D Sbjct: 4 ENYGTHIKHIRQKMGLTQNQVAEALGVTPGYISNVENNRTAMSLRILTYYAKLCGCSLDS 63 Query: 90 IYDGEVIDRRYEDV-----TNKKRLDPYAIGARLKSI 121 + + + +LD LK+I Sbjct: 64 LVGTLDPEYSETALDRKLYNTIMQLDVDTKEKLLKTI 100 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 38/95 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ G +K IR+ G++Q + + LG+ +SN E RT ++ ++ Sbjct: 1 MNSENYGTHIKHIRQKMGLTQNQVAEALGVTPGYISNVENNRTAMSLRILTYYAKLCGCS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 LD + + ++ K + + D K Sbjct: 61 LDSLVGTLDPEYSETALDRKLYNTIMQLDVDTKEK 95 >gi|294146600|ref|YP_003559266.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677017|dbj|BAI98534.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 236 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 36/109 (33%), Gaps = 7/109 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ +R ++ ++ + + +E G + L + ++ + Sbjct: 126 LGERLLRLRHEKGMSRTALSERTGFSKPTIWGWETGRTTPRRENLRILSAVFGLTEQQLL 185 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 G+ + D + +S+++ S+ + G+ Sbjct: 186 YGKGRS-------TLRETDGSGPESYTRSLKEVIDQSKTRIAEAAGVSK 227 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 D + +G RL +R +KGMS+ + G T+ +E GR Sbjct: 103 LRHPGRDAMQTAGDRPEGAADEGLGERLLRLRHEKGMSRTALSERTGFSKPTIWGWETGR 162 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGD 176 T P + R + V + +G Sbjct: 163 TTPRRENLRILSAVFGLTEQQLLYGK 188 >gi|257883805|ref|ZP_05663458.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257819643|gb|EEV46791.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] Length = 221 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I+ R+ TQKE+ + ++ +EN + L + D Sbjct: 2 NIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPID 59 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++++ R++ ++Q E G+ +G+ + T+S++E RT+P+++ + Q +D+ Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 172 --IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I E I P + S SK+ Sbjct: 61 PSIESATESIEPTLPDEPLVIKKSYSSKQ 89 >gi|254003130|ref|YP_003052596.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4] gi|253987213|gb|ACT52069.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4] Length = 77 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + G ++ IR + TQ+ + + + S ++L E G S ++ L L + Sbjct: 1 MKNKRRSFGKILRQIRVQSGFTQEALGLESGIDRSYISLIERGESSPTLDTILQLCTALD 60 Query: 85 ISFDWIYDGEVIDRRYE 101 IS ++ + + E Sbjct: 61 ISLSYLAAKYESEMQQE 77 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + G L+ IR G +Q G G+ S +S E+G + P + ++ L ++ Sbjct: 7 SFGKILRQIRVQSGFTQEALGLESGIDRSYISLIERGESSPTLDTILQLCTALDISLSYL 66 >gi|261366571|ref|ZP_05979454.1| LexA repressor [Subdoligranulum variabile DSM 15176] gi|282571390|gb|EFB76925.1| LexA repressor [Subdoligranulum variabile DSM 15176] Length = 209 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RKA +Q E++ + AV +E G + + L + + D + Sbjct: 2 FADRLKEARKAKKYSQAEISRMLGVTQQAVGKWETGRSTPDPQTVARLAEILDTTADVLL 61 Query: 92 DGEVIDRRYEDVTNK 106 + V Sbjct: 62 GLQKSPSEAPAVGRY 76 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK RK K SQ E ++LG+ + +E GR+ P+ + ++ ++ D + Sbjct: 1 MFADRLKEARKAKKYSQAEISRMLGVTQQAVGKWETGRSTPDPQTVARLAEILDTTADVL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|205375367|ref|ZP_03228157.1| XRE family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 111 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 VG RI+ +R+ T +E+A+ + +S ++ E G + SIR L + + + + + Sbjct: 2 VGNRIRMLREERKLTMQELAVRSKVSKSYISSIERGLQKNPSIRILLRIADTLHVELEDL 61 Query: 91 YDGEVIDRRYEDVTNK 106 +D + + Sbjct: 62 FDSTASRFEDTILDQE 77 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 +G R++ +R+++ ++ E + S +S+ E+G + P I+ +I L+ Sbjct: 1 MVGNRIRMLREERKLTMQELAVRSKVSKSYISSIERGLQKNPSIRILLRIADTLHVELED 60 Query: 172 IY 173 ++ Sbjct: 61 LF 62 >gi|297195701|ref|ZP_06913099.1| transcriptional regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718957|gb|EDY62865.1| transcriptional regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 201 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 25/73 (34%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ Q + + +K R T +A + + E + S+ + L + Sbjct: 13 SDLDQLTQSLARNLKHWRGERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADA 72 Query: 83 YEISFDWIYDGEV 95 +S + D E Sbjct: 73 LGVSITTLLDYEQ 85 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 2/85 (2%) Query: 95 VIDRRYEDVTNKKRLDPY--AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 + + N LD ++ LK R ++G + G+ + EQ RT Sbjct: 1 MNSVIQDIGRNVSDLDQLTQSLARNLKHWRGERGFTLDALAARSGVSRGMIIQIEQARTN 60 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDE 177 P + K+ + + ++ Sbjct: 61 PSVGTTVKLADALGVSITTLLDYEQ 85 >gi|328545630|ref|YP_004305739.1| transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326415700|gb|ADZ72763.1| Transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 174 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 32 VGTRIKDIRKANNKTQK-EMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R++++R+ + Q+ E+A +AV +E G + + + ++ +W+ Sbjct: 12 LAQRLRELRRQHGDPQRGELAGKLGISVTAVATYERGEREPAASVLAAYADVFGVNLNWL 71 Query: 91 YDGEVIDRRYEDVTNKKRL 109 GE + + Sbjct: 72 LTGEGEMFADPAKAPARAM 90 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 116 ARLKSIRKDKGMSQI-EFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+ +R+ G Q E LG+ + ++ YE+G P V +L+W+ Sbjct: 14 QRLRELRRQHGDPQRGELAGKLGISVTAVATYERGEREPAASVLAAYADVFGVNLNWLLT 73 Query: 175 GDEVIVPKSIK 185 G+ + K Sbjct: 74 GEGEMFADPAK 84 >gi|317499839|ref|ZP_07958077.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316898741|gb|EFV20774.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 102 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 30/70 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ +K+ R + +QKE++ +S +L+E+G ++ + + +S D Sbjct: 3 ENFNENLKEARIKSGLSQKEVSENIGVAKSTYSLYESGNREPNVNTIKKIADVLNVSADT 62 Query: 90 IYDGEVIDRR 99 + + Sbjct: 63 LLGIDEEPTT 72 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 28/65 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK R G+SQ E + +G+ ST S YE G P + +KI V D + Sbjct: 5 FNENLKEARIKSGLSQKEVSENIGVAKSTYSLYESGNREPNVNTIKKIADVLNVSADTLL 64 Query: 174 FGDEV 178 DE Sbjct: 65 GIDEE 69 >gi|302344010|ref|YP_003808539.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301640623|gb|ADK85945.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 123 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 7/84 (8%) Query: 15 QEYTLIITPEIRQYWKDVGTRI-------KDIRKANNKTQKEMAIGANQLESAVNLFENG 67 + Y +++ E + +V R+ + +R T +++A S ++ E G Sbjct: 40 EFYRRLVSGEEETFPAEVVDRLLAGEHPVRVLRSHRGMTLQQVADACGVTNSHISQIEKG 99 Query: 68 MCSTSIRYALYLRNEYEISFDWIY 91 S S + + + + Sbjct: 100 KRSMSTELLKKMAEALRVDAEMLL 123 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++ +R +GM+ + G+ NS +S E+G+ + +K+ + + + Sbjct: 62 LAGEHPVRVLRSHRGMTLQQVADACGVTNSHISQIEKGKRSMSTELLKKMAEALRVDAEM 121 Query: 172 IY 173 + Sbjct: 122 LL 123 >gi|295696288|ref|YP_003589526.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] gi|295411890|gb|ADG06382.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] Length = 392 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI + RKA +Q+ +A + E G S+ AL L S + ++D Sbjct: 13 GRRISERRKALGWSQELLADRLGVSRQFIGALEAGRSWPSVPVALELARVLGTSVEALFD 72 Query: 93 GEV 95 + Sbjct: 73 PQE 75 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ RK G SQ LG+ + E GR+ P + A ++ +V ++ ++ Sbjct: 14 RRISERRKALGWSQELLADRLGVSRQFIGALEAGRSWPSVPVALELARVLGTSVEALFDP 73 Query: 176 DE 177 E Sbjct: 74 QE 75 >gi|197106670|ref|YP_002132047.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196480090|gb|ACG79618.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 479 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 18/152 (11%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + + P R+ + +G R+K +R+ TQ MA S +NL E + + L Sbjct: 1 MALAPTDRKLF--LGARLKRLRRDLGLTQTRMAEDLGVSPSYLNLLERNQRPVTAQVLLR 58 Query: 79 LRNEYEISFDWIYDGEVIDRRYED---VTNKKRLDPYAIGARLKS------------IRK 123 L Y++ + + +++ D + +R Sbjct: 59 LAEAYDLDLKTLSSDPESASATDLAEVFSDQMFRDLGVARHEVAEVADSAPGVSEAIVRL 118 Query: 124 DK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + Q +L + +E P Sbjct: 119 YRAYLDQRRLSELGQVGRPEEGAFENSVVTPS 150 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +GARLK +R+D G++Q + LG+ S L+ E+ + + ++ + L Sbjct: 10 LFLGARLKRLRRDLGLTQTRMAEDLGVSPSYLNLLERNQRPVTAQVLLRLAEAYDLDL 67 >gi|17545816|ref|NP_519218.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428110|emb|CAD14799.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 113 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R A +K+Q+ +A A+ + ++ E G+ + S+ + + ++ ++ Sbjct: 24 LGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K R SQ + + +S+ E+G P ++ I L Sbjct: 22 IALGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSE 81 Query: 172 IY 173 ++ Sbjct: 82 LF 83 >gi|309774559|ref|ZP_07669585.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917674|gb|EFP63388.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 400 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +I +RK TQ ++A N AV+ +E I L +S D Sbjct: 4 EQFAEKIIRLRKKKGYTQAQLAELLNVSNKAVSRWETAEGYPDITLLKPLSEALGVSCDE 63 Query: 90 IY 91 + Sbjct: 64 LL 65 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++ +RK KG +Q + +LL + N +S +E P+I + + + Sbjct: 1 MNKEQFAEKIIRLRKKKGYTQAQLAELLNVSNKAVSRWETAEGYPDITLLKPLSEALGVS 60 Query: 169 LDWIYFGDEV 178 D + E Sbjct: 61 CDELLGDSES 70 >gi|34496668|ref|NP_900883.1| hypothetical protein CV_1213 [Chromobacterium violaceum ATCC 12472] gi|34102523|gb|AAQ58888.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 115 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 6/104 (5%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ Q + +G + RKA Q+++A A++ E G ++ L L Sbjct: 5 DVEQLNQRIGQAVARHRKALGMNQEDLAEKLGVGLEAISRLERGRIKPTLVRLLELAEVL 64 Query: 84 EISFDWIY------DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 S + + G+ + + K+ D + ++ + Sbjct: 65 GCSVNDLLSETSVNPGDQARYLEQLLARLKQADRQLVVDMVEQL 108 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + RK GM+Q + + LG+ +S E+GR P + ++ +V ++ + + Sbjct: 17 VARHRKALGMNQEDLAEKLGVGLEAISRLERGRIKPTLVRLLELAEVLGCSVNDLLS-ET 75 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 + P R ++ + D++ Sbjct: 76 SVNPGDQARYLEQLLARLKQADRQ 99 >gi|78224628|ref|YP_386375.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195883|gb|ABB33650.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 198 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 20 IITPEIRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 + P+I+ K++ G +++ +R+ T +E++ + + ++ EN + I L Sbjct: 1 MTVPDIKSQIKELRLGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLL 60 Query: 78 YLRNEYEISFDWIYDGEVI 96 + ++ + ++ E Sbjct: 61 KISKGLKVGIHYFFEEEED 79 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 42/92 (45%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K ++ +G +++ +R+++ ++ E +L G+ LS E + P I KI + Sbjct: 7 KSQIKELRLGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGL 66 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 K + + + +E + RA ++++ Sbjct: 67 KVGIHYFFEEEEDQQKLVLTRASQQTATRRRT 98 >gi|296277306|ref|ZP_06859813.1| phage repressor [Staphylococcus aureus subsp. aureus MR1] Length = 107 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK +RK NN + A +S ++ +ENG + + N +++ +++ Sbjct: 6 EIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYL 65 Query: 91 YDGEVIDRRYED 102 Sbjct: 66 LLKNRQPENEVQ 77 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK+ ++ +F +G+ STLS YE G ++ +I K +++ + Sbjct: 11 IKQLRKENNVNLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYLLLKNR 70 Query: 178 VIVPKSIKRA 187 + RA Sbjct: 71 QPENEVQHRA 80 >gi|295693657|ref|YP_003602267.1| transcriptional regulator [Lactobacillus crispatus ST1] gi|295031763|emb|CBL51242.1| Transcriptional regulator [Lactobacillus crispatus ST1] Length = 65 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R K M+Q + + + + T+S E+G P + KI QV K LD +++ +E Sbjct: 6 MKAARVGKDMTQEDLAQQVDVSRQTISAIEKGNYNPSVNLCIKICQVLDKTLDDLFWPEE 65 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ+++A + ++ E G + S+ + + + + D ++ E Sbjct: 5 KMKAARVGKDMTQEDLAQQVDVSRQTISAIEKGNYNPSVNLCIKICQVLDKTLDDLFWPE 64 Query: 95 V 95 Sbjct: 65 E 65 >gi|229918743|ref|YP_002887389.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229470172|gb|ACQ71944.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 150 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +K +RK TQKE+A +S+++ +E+ + + + +++ + Sbjct: 3 KFGDLLKQLRKEKKLTQKELAEDLELDQSSISNYESNKKLPDVDTMMKMAIVFDVPVQEL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + + Sbjct: 63 INARNYTAHGIQPNGSYGITW 83 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK +RK+K ++Q E + L + S++SNYE + +P++ K+ V + Sbjct: 1 MLKFGDLLKQLRKEKKLTQKELAEDLELDQSSISNYESNKKLPDVDTMMKMAIVFDVPVQ 60 Query: 171 WIY 173 + Sbjct: 61 ELI 63 >gi|166091592|ref|YP_001654042.1| putative transcriptional regulator [Bacillus thuringiensis] gi|165875369|gb|ABY68524.1| putative transcriptional regulator [Bacillus thuringiensis] Length = 130 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +R KE+ S ++ +EN S + + +S D + Sbjct: 6 FGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFEMLQKISIYFNVSTDRLL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 + ++ D ++K + Sbjct: 66 NHKIGDSEALTTEDRKLI 83 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G ++ +R KG++ E G +LG+ +ST+SN+E R P + +KI Sbjct: 1 MIQNYFGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFEMLQKISIYFNVS 60 Query: 169 LDWIYF---GDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 D + GD + ++ + ++ + KS Sbjct: 61 TDRLLNHKIGDSEALTTEDRKLIVERLAQDLYESYKS 97 >gi|44004506|ref|NP_982174.1| helix-turn-helix/TPR domain-containing protein [Bacillus cereus ATCC 10987] gi|190015190|ref|YP_001966786.1| putative transcriptional regulator [Bacillus cereus] gi|190015455|ref|YP_001967110.1| putative transcriptional regulator [Bacillus cereus] gi|218848240|ref|YP_002455177.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820] gi|229113469|ref|ZP_04242919.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15] gi|296506587|ref|YP_003667821.1| helix-turn-helix/TPR domain-containing protein [Bacillus thuringiensis BMB171] gi|42741572|gb|AAS45017.1| helix-turn-helix/TPR domain protein [Bacillus cereus ATCC 10987] gi|116584866|gb|ABK00981.1| putative transcriptional regulator [Bacillus cereus] gi|116585136|gb|ABK01245.1| putative transcriptional regulator [Bacillus cereus] gi|218540291|gb|ACK92687.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820] gi|228669987|gb|EEL25380.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15] gi|296327174|gb|ADH10101.1| helix-turn-helix/TPR domain-containing protein [Bacillus thuringiensis BMB171] Length = 421 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK++RK TQ+++A G S ++ E G+ S L N+ S + + Sbjct: 2 LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDFF 60 Query: 92 D 92 D Sbjct: 61 D 61 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 4/85 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+K +RK K ++Q + + + S LS E+G P + + ++ Sbjct: 1 MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSK 197 + +V+ K + ++ + K ++ Sbjct: 60 F---DVVENKELTLSQIKKDIKAAE 81 >gi|15668446|ref|NP_247244.1| repressor protein YorfE [Methanocaldococcus jannaschii DSM 2661] gi|1590997|gb|AAB98257.1| repressor protein, putative (yorfE) [Methanocaldococcus jannaschii DSM 2661] Length = 79 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + + ++K R +N TQ+++A + E G S++ A + + + Sbjct: 10 HSETMKNKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKI 69 Query: 88 DWIYDGEVID 97 + I+ E + Sbjct: 70 EDIFIYEDDE 79 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + K + +LK R ++Q + K LG+ T+ E+G+ P +K A KI + Sbjct: 5 HLKSFHSETMKNKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKF 64 Query: 165 TKKHLDWIYFGDEV 178 ++ I+ ++ Sbjct: 65 FGVKIEDIFIYEDD 78 >gi|116691614|ref|YP_837147.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736384|ref|YP_001777644.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206562401|ref|YP_002233164.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|116649614|gb|ABK10254.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] gi|169818572|gb|ACA93154.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] gi|198038441|emb|CAR54399.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 73 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +R+A +Q+++A A S V E G SI A + +++S + Sbjct: 8 FGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 67 Query: 92 DGEV 95 G Sbjct: 68 PGAY 71 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + GA ++ +R+ + SQ + + G+ S + E+G I I A KI + + Sbjct: 6 HHFGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSIST 65 Query: 172 IYFG 175 + G Sbjct: 66 LLPG 69 >gi|325262373|ref|ZP_08129110.1| transcriptional regulator [Clostridium sp. D5] gi|324032205|gb|EGB93483.1| transcriptional regulator [Clostridium sp. D5] Length = 140 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ +G ++ +R + T +E+A +V +EN + L N Y Sbjct: 1 MKNRKGTIGNTLRCLRMKHKYTMEELAKVIGVSRQSVAKWENNESLPDLLKCSDLANLYG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 I+ D I +G D E + K + Sbjct: 61 ITVDAIINGSFADNSEESEDDGKYI 85 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R + E K++G+ +++ +E ++P++ + + +D I G Sbjct: 10 NTLRCLRMKHKYTMEELAKVIGVSRQSVAKWENNESLPDLLKCSDLANLYGITVDAIING 69 >gi|295705528|ref|YP_003598603.1| helix-turn-helix family protein [Bacillus megaterium DSM 319] gi|294803187|gb|ADF40253.1| helix-turn-helix family protein [Bacillus megaterium DSM 319] Length = 141 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 38/79 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ +++E+A + ++ +EN I++ L L + YE + D Sbjct: 3 LGNQLQTLREEQKISEEEVAEQLSVSVQHIHKWENNKSYPDIQHLLKLSDIYETTIDEFI 62 Query: 92 DGEVIDRRYEDVTNKKRLD 110 + + ++ +++ D Sbjct: 63 KKDATLQNRINIREEEKKD 81 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 45/94 (47%), Gaps = 6/94 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +L+++R+++ +S+ E + L + + +E ++ P+I+ K+ + + +D Sbjct: 1 MRLGNQLQTLREEQKISEEEVAEQLSVSVQHIHKWENNKSYPDIQHLLKLSDIYETTIDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D + + + N ++ K D + +P Sbjct: 61 FIKKDATL------QNRINIREEEKKDDDELFHP 88 >gi|293556240|ref|ZP_06674830.1| prophage Lp1 protein 8 [Enterococcus faecium E1039] gi|291601659|gb|EFF31921.1| prophage Lp1 protein 8 [Enterococcus faecium E1039] Length = 126 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD+ RI D+R+ + Q E+ +SA+N ENG S L + ++ D+ Sbjct: 3 KDLVNRIIDLREKRDWNQAELGRKIGLEKSAMNKIENGTRRVSTEELQKLAEVFNVTTDY 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPY 112 + G + + LD Sbjct: 63 LL-GRNQTPEWATKEDIIELDKL 84 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ +R+ + +Q E G+ +G+ S ++ E G + +K+ +V D++ Sbjct: 7 NRIIDLREKRDWNQAELGRKIGLEKSAMNKIENGTRRVSTEELQKLAEVFNVTTDYLLGR 66 Query: 176 DEVIV 180 ++ Sbjct: 67 NQTPE 71 >gi|257870115|ref|ZP_05649768.1| cupin/helix-turn-helix domain-containing protein [Enterococcus gallinarum EG2] gi|257804279|gb|EEV33101.1| cupin/helix-turn-helix domain-containing protein [Enterococcus gallinarum EG2] Length = 180 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 31/67 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 2 EIGEKLRNLRVQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFTILEVLGVTPEEF 61 Query: 91 YDGEVID 97 + E D Sbjct: 62 FRQENAD 68 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 1 MEIGEKLRNLRVQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFTILEVLGVTPEE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + E + + R + + S + + Sbjct: 61 FFR-QENADHQVVYREEDSTSYYDEENGYE 89 >gi|218233270|ref|YP_002367096.1| DNA-binding protein [Bacillus cereus B4264] gi|228939550|ref|ZP_04102137.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972402|ref|ZP_04133013.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979016|ref|ZP_04139380.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|218161227|gb|ACK61219.1| DNA-binding protein [Bacillus cereus B4264] gi|228780727|gb|EEM28941.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|228787419|gb|EEM35387.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820120|gb|EEM66158.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940096|gb|AEA15992.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 186 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T ++ A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNNMTIRDFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + S Sbjct: 66 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNKQA---NTTES 122 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 S+ ++ I K +V L+ ++ GD V +P ++K N+S + + Sbjct: 123 HYSHEDKEE----IAVIMK-GEVY-VELEGKEYFLEEGDVVRIPPNVKHRFLNKSDESN 175 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ +F G+ S +S E+G P + I + L ++ D + Sbjct: 13 YRKKNNMTIRDFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFIND-IDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENND 90 >gi|167589656|ref|ZP_02382044.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 76 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G ++ +R+A +Q+++A A S V E G S+ + ++ Sbjct: 1 MSDLIRHFGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASLVTVDKIARAFD 60 Query: 85 ISFDWIYDG 93 +S + G Sbjct: 61 VSISTLLSG 69 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GA ++ +R+ + SQ + + G+ S + E+G I + KI + + + Sbjct: 7 HFGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASLVTVDKIARAFDVSISTL 66 Query: 173 YFG 175 G Sbjct: 67 LSG 69 >gi|75677167|ref|YP_319588.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74422037|gb|ABA06236.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 483 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 13/130 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + +R+ +Q + A G S VNL E + + L L Y++ + Sbjct: 11 VGPRFRRVRQQLGLSQTQFAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQ 148 + R+ N+ DP + + +R + +L G+ ++ Y Sbjct: 70 -ATADEDRFFAELNEVFSDPLFRQIDIPRQELR--------DLAELCPGVTHALQRLYAA 120 Query: 149 GRTIPEIKPA 158 + Sbjct: 121 YTEARRGETL 130 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + +R+ G+SQ +F + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRVRQQLGLSQTQFAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRDLATADED 75 >gi|329891038|ref|ZP_08269381.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846339|gb|EGF95903.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 72 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+++R TQ ++A + E G S S+ A + + + + Sbjct: 8 IRNRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAQVFGVEIGEV 67 Query: 91 YDGE 94 + E Sbjct: 68 FQWE 71 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++ +R G M+Q + +GM T+ EQG+ P ++ A +I QV + + Sbjct: 8 IRNRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAQVFGVEIGEV 67 Query: 173 Y 173 + Sbjct: 68 F 68 >gi|325687772|gb|EGD29793.1| phage transcriptional repressor [Streptococcus sanguinis SK72] gi|327461118|gb|EGF07451.1| phage transcriptional repressor [Streptococcus sanguinis SK1057] Length = 242 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 1/112 (0%) Query: 19 LIITPEIRQYWKDV-GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 ++ ++Y+ G R+K R TQ E+A S+ N +E+G + + Sbjct: 2 MLFYKTTQEYYIMFSGKRLKQKRIEKGMTQAEIADIIRINRSSYNSWESGRAKPNQKNLS 61 Query: 78 YLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 L + +S + I Y + + L ++ K Q Sbjct: 62 ALASILGVSDTYFESEYDIMNHYLQLNPMNQQKADNYVEDLLQSQEQKKTIQ 113 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 + G RLK R +KGM+Q E ++ + S+ +++E GR P K + Sbjct: 6 KTTQEYYIMFSGKRLKQKRIEKGMTQAEIADIIRINRSSYNSWESGRAKPNQKNLSALAS 65 Query: 164 VTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + D + + I+ ++ NQ Sbjct: 66 ILGVS-DTYFESEYDIMNHYLQLNPMNQ 92 >gi|291619608|ref|YP_003522350.1| PuuR [Pantoea ananatis LMG 20103] gi|291154638|gb|ADD79222.1| PuuR [Pantoea ananatis LMG 20103] Length = 203 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 + L+ + ++ ++G R+K IRK+ N T KE+A AN A++ E + + ++R Sbjct: 4 KTALMHSEDLSAVEINIGVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRV 63 Query: 76 ALYLRNEYEISF 87 LR + Sbjct: 64 LEQLRVVLNVPL 75 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK IRK + M+ E + + +S E+ P ++ +++ V L E Sbjct: 24 LKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRVLEQLRVVLNVPLTAFLEQHE 83 Query: 178 VIVP 181 V+ P Sbjct: 84 VMRP 87 >gi|295700360|ref|YP_003608253.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439573|gb|ADG18742.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 195 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +R A N + +A + S ++L E G S + L + ++ Sbjct: 7 IARRVKALRDAQNWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVPLASLF 66 Query: 92 DGEVIDRRYEDVTNK 106 + E ++ Sbjct: 67 EREGTPAAEPSPVSR 81 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 3/82 (3%) Query: 109 LDPYAIGAR-LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D A+ AR +K++R + S + + S +S E+G++ P K+ Sbjct: 1 MDINALIARRVKALRDAQNWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNV 60 Query: 168 HLDWIY--FGDEVIVPKSIKRA 187 L ++ G P + RA Sbjct: 61 PLASLFEREGTPAAEPSPVSRA 82 >gi|167760938|ref|ZP_02433065.1| hypothetical protein CLOSCI_03326 [Clostridium scindens ATCC 35704] gi|167661541|gb|EDS05671.1| hypothetical protein CLOSCI_03326 [Clostridium scindens ATCC 35704] Length = 112 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 41/76 (53%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI++IRKA TQ ++A + S ++ ENG S ++ +A + + ++ I+ Sbjct: 8 GQRIQEIRKAQGITQNQLAEKLHVSPSFISRIENGSSSLTVDFACEIADALHVARQEIFC 67 Query: 93 GEVIDRRYEDVTNKKR 108 +I+ + E+V + + Sbjct: 68 DLLINYQTEEVDSISQ 83 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R++ IRK +G++Q + + L + S +S E G + + A +I Sbjct: 5 MKTGQRIQEIRKAQGITQNQLAEKLHVSPSFISRIENGSSSLTVDFACEIADALHVARQE 64 Query: 172 IY 173 I+ Sbjct: 65 IF 66 >gi|150390409|ref|YP_001320458.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950271|gb|ABR48799.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 179 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +I+ +R N TQ E+A + + ++ E + S SI + + I + Sbjct: 2 DIGEKIRRLRILNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDILEALGIDVNKF 61 Query: 91 YDGEVIDRRYEDVTN 105 ++ +V D+ + Sbjct: 62 FNEDVQDKIVYTKED 76 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R ++Q E + + +S E+ T P I I + ++ Sbjct: 1 MDIGEKIRRLRILNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDILEALGIDVNK 60 Query: 172 IYFGD 176 + D Sbjct: 61 FFNED 65 >gi|118445241|ref|YP_891175.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118419802|gb|ABK88220.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 115 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 8/114 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG IK++RK+ + TQ++++ + +E + L + + S D + Sbjct: 5 VGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKILASFFNTSTDALL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 + E + ++ + G Q F K + + L N Sbjct: 65 NFENRKEDALLGLLFNDIQ--------RAYEELDGRQQGRFAKQVSLYVKMLQN 110 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K++RK ++Q + + G+ + N+E R P+++ + + D + Sbjct: 7 QNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKILASFFNTSTDALLNF 66 Query: 176 D 176 + Sbjct: 67 E 67 >gi|186473323|ref|YP_001860665.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195655|gb|ACC73619.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 189 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 ++T + +G++I+ +R+ +T E A A + ++ E G+ S SI + Sbjct: 1 MVTTLEKDTALALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGI 60 Query: 80 RNEYEISFDWIYDGEVIDRR 99 N + + D +R Sbjct: 61 ANALGVKVQYFVDTPSEERT 80 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G++++++R+ + E G+ LS E+G P I I + + Sbjct: 11 LALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIANALGVKVQY 70 Query: 172 IY 173 Sbjct: 71 FV 72 >gi|90419918|ref|ZP_01227827.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335959|gb|EAS49707.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 472 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR TQ MA S +NL E +++ L L Y++ + Sbjct: 9 GPRIRRIRNGLGLTQTAMAEELGISPSYLNLIERNQRPLTVQLILKLSQTYDVDIGDL 66 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR G++Q + LG+ S L+ E+ + ++ K+ Q + + Sbjct: 12 IRRIRNGLGLTQTAMAEELGISPSYLNLIERNQRPLTVQLILKLSQTYDVDIGDL 66 >gi|296102221|ref|YP_003612367.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056680|gb|ADF61418.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 191 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + RI+ R++ + E+A A + ++ E G S + L + IS Sbjct: 9 NQRISARIRLERESRGWSLSELADRAGVSRAMIHKIERGDSSPTATLLARLSGAFGISMS 68 Query: 89 WIY 91 + Sbjct: 69 TLI 71 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R+ +G S E G+ + + E+G + P ++ + + Sbjct: 14 ARIRLERESRGWSLSELADRAGVSRAMIHKIERGDSSPTATLLARLSGAFGISMSTLIAR 73 Query: 176 DEVIVPKSIKRAK 188 E+ K ++ A Sbjct: 74 AEMQEGKLLRLAN 86 >gi|257139484|ref|ZP_05587746.1| helix-turn-helix domain-containing protein [Burkholderia thailandensis E264] Length = 119 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + + VG I R+ + TQ+++A A++ E G+ ++ + L + Sbjct: 9 EETRLARRVGKAIARRREESQLTQEDVAEQLGVGNEAISRIERGIVMPTVARLVQLAKVF 68 Query: 84 EISFDWIYD 92 + + + Sbjct: 69 QCNVADLLT 77 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + R++ ++Q + + LG+ N +S E+G +P + ++ +V + ++ + Sbjct: 19 KAIARRREESQLTQEDVAEQLGVGNEAISRIERGIVMPTVARLVQLAKVFQCNVADLLT- 77 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + P R +K S +D+++ Sbjct: 78 EASHRPDDQARHLSQLLTKLSPQDRET 104 >gi|227545279|ref|ZP_03975328.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908649|ref|ZP_07126112.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227184748|gb|EEI64819.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894056|gb|EFK87414.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 69 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K RK +Q ++A +NL EN + S+ + L + ++ Sbjct: 2 NRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLFWE 61 Query: 94 EVIDRRYE 101 E D R Sbjct: 62 EHTDERNN 69 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 33/62 (53%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RKD+G+SQ++ + +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLFW 60 Query: 175 GD 176 + Sbjct: 61 EE 62 >gi|254519819|ref|ZP_05131875.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226913568|gb|EEH98769.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 179 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ +R TQ+E+A + ++ EN + S SI + + + Sbjct: 2 EIGEKIRRLRIEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLTEF 61 Query: 91 Y---DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E + YED+ + D L Sbjct: 62 FSEASEEKVTYTYEDMFETENEDLKYKLMWL 92 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R +K ++Q E + +S E T P I I ++ +L Sbjct: 1 MEIGEKIRRLRIEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLTE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|160221335|gb|ABX11276.1| XRE-like transcriptional regulator [Burkholderia sp. MBA4] Length = 189 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 ++T + +G++I+ +R+ +T E A A + ++ E G+ S SI + Sbjct: 1 MVTTLEKDTALALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGI 60 Query: 80 RNEYEISFDWIYDGEVIDRR 99 N + + D +R Sbjct: 61 ANALGVKVQYFVDTPSEERS 80 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G++++++R+ + E G+ LS E+G P I I + + Sbjct: 11 LALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIANALGVKVQY 70 Query: 172 IYFGDEVIVPKSIKRAKG 189 D +S+ RA Sbjct: 71 FV--DTPSEERSVCRANE 86 >gi|90416630|ref|ZP_01224561.1| putative DNA-binding protein [marine gamma proteobacterium HTCC2207] gi|90331829|gb|EAS47057.1| putative DNA-binding protein [marine gamma proteobacterium HTCC2207] Length = 192 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + +R+ +RK N T ++A + S ++ E G + ++ + + +S Sbjct: 13 QALSSRVTALRKKNKLTLDQLAGASGVSRSMLSQIERGQANPTLTVTFRIAQAFGMSIGE 72 Query: 90 IYD--GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + D + +K L +++++ Sbjct: 73 LVDQAWQSSTIEVVHGEDKSNLFRNDKECQIRTL 106 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 ++RK ++ + G+ S LS E+G+ P + +I Q + + D+ Sbjct: 21 ALRKKNKLTLDQLAGASGVSRSMLSQIERGQANPTLTVTFRIAQAFGMSIGELV--DQAW 78 Query: 180 VPKSIKRAKGNQSSKKSKKDKK 201 +I+ G S + DK+ Sbjct: 79 QSSTIEVVHGEDKSNLFRNDKE 100 >gi|50085608|ref|YP_047118.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49531584|emb|CAG69296.1| putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 198 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 30/84 (35%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 T + + +G +IK R+ E+A A + ++ EN STS+ L + Sbjct: 4 TKNSVKLEQYIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCD 63 Query: 82 EYEISFDWIYDGEVIDRRYEDVTN 105 I ++ + + Sbjct: 64 VLGIPMSTLFSQYDQQESHAMLVK 87 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY--F 174 ++K R+++G+ E ++ G+ LS E + ++ ++ V + ++ + Sbjct: 17 QIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTLFSQY 76 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKK 198 + +K G + ++ + Sbjct: 77 DQQESHAMLVKSGDGMEVVRRGTE 100 >gi|294085273|ref|YP_003552033.1| DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664848|gb|ADE39949.1| DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 208 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 28/80 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ RK N T E+A V+ ENG S S+ L N ++ + Sbjct: 24 IGREVRAHRKQQNITVAELAHLTGISIGMVSKIENGNTSPSLSTLQTLSNALGVTLTSFF 83 Query: 92 DGEVIDRRYEDVTNKKRLDP 111 R + ++ Sbjct: 84 RRFEESRTAIHTKAGEGVEM 103 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 1/115 (0%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + ++++ AIG +++ RK + ++ E L G+ +S E G Sbjct: 1 MPANLNQDPHRLKDEREKILELAIGREVRAHRKQQNITVAELAHLTGISIGMVSKIENGN 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 T P + + + L + +E K +G + + + N Sbjct: 61 TSPSLSTLQTLSNALGVTLTSFFRRFEESRTAIHTKAGEGVEMERAGTRAGHQYN 115 >gi|172041518|ref|YP_001801232.1| HTH family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852822|emb|CAQ05798.1| putative transcriptional regulator (HTH_3 family) [Corynebacterium urealyticum DSM 7109] Length = 514 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 7/96 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 VG+R++ +RK + +Q ++A S VN E+ ++ + + + Sbjct: 35 VGSRLRQLRKERDISQAQLATTLGLSASYVNQIEHDQRPLTLAVLQKITRAFGVDATFFA 94 Query: 88 --DWI-YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 D + EV D + +D + ++ Sbjct: 95 NEDSLRLLAEVQDVMADRDIWPTPVDVTELAELVRH 130 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 36/86 (41%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + + +G+RL+ +RK++ +SQ + LG+ S ++ E + + +K Sbjct: 22 QSPRTPDETNRNFVGSRLRQLRKERDISQAQLATTLGLSASYVNQIEHDQRPLTLAVLQK 81 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKR 186 I + + D + + ++ Sbjct: 82 ITRAFGVDATFFANEDSLRLLAEVQD 107 >gi|166030371|ref|ZP_02233200.1| hypothetical protein DORFOR_00032 [Dorea formicigenerans ATCC 27755] gi|166029840|gb|EDR48597.1| hypothetical protein DORFOR_00032 [Dorea formicigenerans ATCC 27755] Length = 159 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 33/85 (38%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + V + RK N TQKE+A +A++ +ENG+ S I + + I Sbjct: 3 DNIKETVAKNLLYYRKKNKITQKELAEKLGVKHNAISSWENGVNSIDIDTLFQICKIFGI 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLD 110 S + +Y + + D Sbjct: 63 SVNDMYASPFHQLSSLKNIDVSKFD 87 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L RK ++Q E + LG+ ++ +S++E G +I +I ++ ++ +Y Sbjct: 11 KNLLYYRKKNKITQKELAEKLGVKHNAISSWENGVNSIDIDTLFQICKIFGISVNDMY 68 >gi|310829679|ref|YP_003962036.1| prophage Lp1 protein 8 [Eubacterium limosum KIST612] gi|308741413|gb|ADO39073.1| prophage Lp1 protein 8 [Eubacterium limosum KIST612] Length = 243 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 36/70 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++RK++ TQ +MA ++++ +E+G +R L NE+++SF+++ Sbjct: 11 ARLRELRKSHKLTQAQMAARLGIAPASLSYYESGERLPDLRVMDTLYNEFDVSFEYMLGY 70 Query: 94 EVIDRRYEDV 103 + Sbjct: 71 TQSPLPPDPT 80 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ ARL+ +RK ++Q + LG+ ++LS YE G +P+++ + Sbjct: 1 MSDINLSYFPARLRELRKSHKLTQAQMAARLGIAPASLSYYESGERLPDLRVMDTLYNEF 60 Query: 166 KKHLDWIYFGDEVIVP 181 +++ + +P Sbjct: 61 DVSFEYMLGYTQSPLP 76 >gi|332653789|ref|ZP_08419533.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516875|gb|EGJ46480.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 182 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 11/105 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K RKA +Q+E+AI + + V+ +E G+ + L + S + Sbjct: 2 LSENLKHFRKAKGLSQEELAIKLHIVRQTVSKWEKGLSVPDSGMLIRLAEALDTSVTALL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 GE+ + + LK+I + +F Sbjct: 62 -GEMAGSEPASGESAE----------LKAIAAKLELLNEQFAARC 95 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + LK RK KG+SQ E L + T+S +E+G ++P+ ++ + + + Sbjct: 1 MLSENLKHFRKAKGLSQEELAIKLHIVRQTVSKWEKGLSVPDSGMLIRLAEALDTSVTAL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKK 195 P S + A+ + K Sbjct: 61 LGEMAGSEPASGESAELKAIAAK 83 >gi|294101545|ref|YP_003553403.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293616525|gb|ADE56679.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 123 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 4/121 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RKA TQ+ +A + + E+ S++ L ++ + Sbjct: 3 LGIRIKTLRKAARLTQQALADKTDVSRIYIQALESNRRLPSMKLLSKLAQALDVEITDLV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G D + + G KS K E LL + +T+S ++ Sbjct: 63 KGTPSDESGRIHLEELLENHGGGGIWYKSHCFSKN----ELCFLLQLIETTVSFWQNENK 118 Query: 152 I 152 Sbjct: 119 E 119 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K++RK ++Q + + E R +P +K K+ Q + + G Sbjct: 7 IKTLRKAARLTQQALADKTDVSRIYIQALESNRRLPSMKLLSKLAQALDVEITDLVKG 64 >gi|257064611|ref|YP_003144283.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792264|gb|ACV22934.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 141 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ +R++ TQKE+A ESAV +E G+ + S + + ++ + + Sbjct: 3 VGERIRALRRSAGLTQKELAASIGLTESAVRNYELGLRTPSDDQLAAMADSIGVAPEALM 62 Query: 92 DGEVIDRRYEDVTNKKRLDPY 112 D V R + D Sbjct: 63 DIRVESARQALEVLFRMEDTL 83 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++++R+ G++Q E +G+ S + NYE G P + + Sbjct: 1 MGVGERIRALRRSAGLTQKELAASIGLTESAVRNYELGLRTPSDDQLAAMADSIGVAPEA 60 Query: 172 IY 173 + Sbjct: 61 LM 62 >gi|192361971|ref|YP_001984171.1| MrfJ protein [Cellvibrio japonicus Ueda107] gi|190688136|gb|ACE85814.1| MrfJ protein [Cellvibrio japonicus Ueda107] Length = 131 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 29/84 (34%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P + + +G R+K +R+ + + +A + ++ +ENG S L Sbjct: 4 PAVTDLDRQIGLRLKKLRQQADISAVALADAIGSTQQQISRYENGQNKLSAAQLYLLAQS 63 Query: 83 YEISFDWIYDGEVIDRRYEDVTNK 106 + W + D V Sbjct: 64 LCVPISWFFLDCDPDPVPRLVKQM 87 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-D 176 LK +R+ +S + +G +S YE G+ + Q + W + D Sbjct: 17 LKKLRQQADISAVALADAIGSTQQQISRYENGQNKLSAAQLYLLAQSLCVPISWFFLDCD 76 Query: 177 EVIVPKSIKR 186 VP+ +K+ Sbjct: 77 PDPVPRLVKQ 86 >gi|169334830|ref|ZP_02862023.1| hypothetical protein ANASTE_01236 [Anaerofustis stercorihominis DSM 17244] gi|169257568|gb|EDS71534.1| hypothetical protein ANASTE_01236 [Anaerofustis stercorihominis DSM 17244] Length = 113 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R TQ+++A + S ++ ENG TS++ L + N IS D I Sbjct: 8 MGERLKRQRIKQKLTQEQLAEAVDLSVSHLSHIENGNTKTSLQTVLNIANVLNISIDKIL 67 Query: 92 DGEV 95 + Sbjct: 68 GIDF 71 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 42/96 (43%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++D +G RLK R + ++Q + + + + S LS+ E G T ++ I V Sbjct: 1 MKIDYLMMGERLKRQRIKQKLTQEQLAEAVDLSVSHLSHIENGNTKTSLQTVLNIANVLN 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 +D I D + + A+ + K KD+K Sbjct: 61 ISIDKILGIDFGTKTRHVPIAEIDVIFKDCAKDEKE 96 >gi|160934049|ref|ZP_02081436.1| hypothetical protein CLOLEP_02912 [Clostridium leptum DSM 753] gi|156866722|gb|EDO60094.1| hypothetical protein CLOLEP_02912 [Clostridium leptum DSM 753] Length = 236 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I +RK +QK+ A ++ ++ +E G+ + + + + Y +S D++ Sbjct: 9 ITLLRKERGLSQKQAASDLQISQALLSHYEKGIRECGLDFVVRTADYYNVSCDYLLGRTP 68 Query: 96 ID 97 Sbjct: 69 DR 70 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 32/87 (36%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +RK++G+SQ + L + + LS+YE+G + + D++ Sbjct: 5 FPRIITLLRKERGLSQKQAASDLQISQALLSHYEKGIRECGLDFVVRTADYYNVSCDYLL 64 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ K++K Sbjct: 65 GRTPDRSGATLTVEDLPDPEAAGKENK 91 >gi|134298619|ref|YP_001112115.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051319|gb|ABO49290.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 69 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 R++++R N TQ+++A V ENG + S+ A + + IS + Sbjct: 3 NRLRELRNELNITQEQLADKLGVSRQTVISIENGKYNPSLILAYKIAKIFAISIEE 58 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R + ++Q + LG+ T+ + E G+ P + A KI ++ ++ + Sbjct: 1 MRNRLRELRNELNITQEQLADKLGVSRQTVISIENGKYNPSLILAYKIAKIFAISIEEAF 60 Query: 174 FGDEVIVPK 182 EV + + Sbjct: 61 DFSEVGMDE 69 >gi|332982997|ref|YP_004464438.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700675|gb|AEE97616.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 71 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +GT+IK +R Q E+A A S ++ ENG S++ L + ++S Sbjct: 2 LGTKIKKLRINKKIKQIELAKAAGISNSFLSDIENGRTMPSLKTLYKLADALDVSI 57 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K +R +K + QIE K G+ NS LS+ E GRT+P +K K+ + D Sbjct: 6 IKKLRINKKIKQIELAKAAGISNSFLSDIENGRTMPSLKTLYKLADALDVSITVFLEDD 64 >gi|332981042|ref|YP_004462483.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698720|gb|AEE95661.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 209 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 25/88 (28%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G + D+R A TQ+++A ++ +E + + E+ + + Sbjct: 3 DFGKLLMDLRNAKQLTQEDVAEKLGVSRQTISSWETNRTKPNYDQIKQICAILEVDMNTL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + L Sbjct: 63 LGNGAGSNKKSAKQVSNIFPILVTLIFL 90 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G L +R K ++Q + + LG+ T+S++E RT P ++I + + ++ + Sbjct: 4 FGKLLMDLRNAKQLTQEDVAEKLGVSRQTISSWETNRTKPNYDQIKQICAILEVDMNTLL 63 >gi|331084883|ref|ZP_08333971.1| hypothetical protein HMPREF0987_00274 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410977|gb|EGG90399.1| hypothetical protein HMPREF0987_00274 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 121 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ +RK+ +Q+E+ + N ++ +E+ + + L + + ++ D + Sbjct: 2 NFNEKLISLRKSKGMSQEELGVELNVSRQTISKWESCQSYPDFQRLVLLSDFFGLTLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLD-PYAIGARLKSIRKD 124 I E N +RL+ Y+ K I K Sbjct: 62 VKDIDIQEVREKNLNSERLNSIYSDVENAKKIIKW 96 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L S+RK KGMSQ E G L + T+S +E ++ P+ + + LD Sbjct: 1 MNFNEKLISLRKSKGMSQEELGVELNVSRQTISKWESCQSYPDFQRLVLLSDFFGLTLDE 60 Query: 172 IYFGDEV--IVPKSIKRAKGNQSSKKSKKDKK 201 + ++ + K++ + N + KK Sbjct: 61 LVKDIDIQEVREKNLNSERLNSIYSDVENAKK 92 >gi|319408017|emb|CBI81671.1| transcriptional regulator [Bartonella schoenbuchensis R1] Length = 136 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 1/97 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTRI+ R TQ+++ + +E G + ++ + + Sbjct: 15 VGTRIRLRRNMLGLTQEKLGEQLGITFQQIQKYEKGTNRVGASRLQAIAEIMDVPVSYFF 74 Query: 92 D-GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 D G + +D + ++ +R + Sbjct: 75 DKGITQSVEGFAESESNFMDFCSSSEGIQLMRAFTNI 111 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R G++Q + G+ LG+ + YE+G + I ++ + + + Sbjct: 19 IRLRRNMLGLTQEKLGEQLGITFQQIQKYEKGTNRVGASRLQAIAEIMDVPVSYFF 74 >gi|307705208|ref|ZP_07642078.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307621230|gb|EFO00297.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 73 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R+ ++ TQK++A + SA E G + + + L N Y++S D++ Sbjct: 3 RRLRDLREDHDLTQKQIAKILSFTNSAYAKIERGEHALTEDVLVTLSNFYDVSTDYLLGL 62 Query: 94 EVIDRR 99 + Sbjct: 63 TDFPDK 68 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+D ++Q + K+L NS + E+G + D++ Sbjct: 1 MYRRLRDLREDHDLTQKQIAKILSFTNSAYAKIERGEHALTEDVLVTLSNFYDVSTDYLL 60 Query: 174 FGDEVIVPKSIKR 186 + ++ Sbjct: 61 GLTDFPDKIRFRK 73 >gi|222150964|ref|YP_002560117.1| hypothetical protein MCCL_0714 [Macrococcus caseolyticus JCSC5402] gi|222120086|dbj|BAH17421.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 180 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE-ISFDW 89 D+G +IKD+R+ N TQ+E+ + + ++ E +CS S+ + D+ Sbjct: 2 DIGKKIKDLRRQKNLTQEELGERTDLSKGYISQLERNLCSPSMETFFNILEVLGSKPKDF 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + R + + + D Y G + + Sbjct: 62 FSEQQYEQRIHYPKSEQTIYDEYDDGYMINWL 93 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R+ K ++Q E G+ + +S E+ P ++ I +V Sbjct: 1 MDIGKKIKDLRRQKNLTQEELGERTDLSKGYISQLERNLCSPSMETFFNILEVLGSKPKD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + E + I K Q+ D Sbjct: 61 FFS--EQQYEQRIHYPKSEQTIYDEYDD 86 >gi|196047670|ref|ZP_03114875.1| transcriptional regulator [Bacillus cereus 03BB108] gi|196021495|gb|EDX60197.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 115 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 8/114 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG IK++RK+ + TQ++++ + +E + L + + S D + Sbjct: 5 VGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 + E + ++ + G Q F K + + L N Sbjct: 65 NFENRKEDALLGLLFNDIQ--------RAYEELDGRQQGRFAKQVSLYVKMLQN 110 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K++RK ++Q + + G+ + N+E R P+++ + + D + Sbjct: 7 QNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALLNF 66 Query: 176 D 176 + Sbjct: 67 E 67 >gi|206975303|ref|ZP_03236217.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97] gi|206746724|gb|EDZ58117.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97] Length = 421 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK++RK TQ+++A G S ++ E G+ S L N+ S + + Sbjct: 2 LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDFF 60 Query: 92 D 92 D Sbjct: 61 D 61 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 4/85 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+K +RK K ++Q + + + S LS E+G P + + ++ Sbjct: 1 MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSK 197 + +V+ K + ++ + K ++ Sbjct: 60 F---DVVENKELTLSQIKKDIKAAE 81 >gi|148642389|ref|YP_001272902.1| xenobiotic response element family DNA binding protein [Methanobrevibacter smithii ATCC 35061] gi|222444408|ref|ZP_03606923.1| hypothetical protein METSMIALI_00019 [Methanobrevibacter smithii DSM 2375] gi|148551406|gb|ABQ86534.1| DNA binding protein (regulator), xenobiotic response element family [Methanobrevibacter smithii ATCC 35061] gi|222433973|gb|EEE41138.1| hypothetical protein METSMIALI_00019 [Methanobrevibacter smithii DSM 2375] Length = 186 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 41/93 (44%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +Y K++G R+K++R+ ++ T ++ A + E+ +ENG + + N++++ Sbjct: 6 EYNKNIGNRVKELRELSDITIQDFAEELDIDETMYKQYENGEVDIPASFLCEIANKFQVD 65 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + GE DVT + K Sbjct: 66 LGLLLTGEETRMNIFDVTRADKGISVERRKEYK 98 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +R+ ++ +F + L + + YE G +I + L + G Sbjct: 13 NRVKELRELSDITIQDFAEELDIDETMYKQYENGEVDIPASFLCEIANKFQVDLGLLLTG 72 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +E + S + +K+ K N Sbjct: 73 EETRMNIFDVTRADKGISVERRKEYKYEN 101 >gi|148927479|ref|ZP_01810979.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] gi|147887175|gb|EDK72643.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] Length = 528 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 20/176 (11%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 Y + +G I+ R TQ EMA +SA+N ENG + S+ + + Sbjct: 25 YKQKIGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQNLSMEMLARISDVLN--- 81 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI-EFGKLLGMPNSTLSNY 146 E++ + N + + + + ++ K + LL +TL Sbjct: 82 -----SEIVSIAHAGTLNFRIHGGHELSGEI-EVKTSKNAAVALLCASLLNRGTTTLRRV 135 Query: 147 EQGRTIPEIKPARKIKQVTK---KHLDWIYFGD-EVIVPKSIKRAKGNQSSKKSKK 198 + I+ +I +V W+ D E+ P +K + + + + Sbjct: 136 AR------IEEVNRIIEVLNSIGVKTRWLGESDLEITPPGRLKLENMDLEAARKTR 185 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 14/92 (15%) Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 L + + I+FD I + L IG ++ R +G +Q E K Sbjct: 4 ILLKIIDR-NITFDIIIY-------------MEPLYKQKIGKLIQQNRLGRGFTQAEMAK 49 Query: 135 LLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LG S ++ E G ++ +I V Sbjct: 50 ALGTSQSAINRIENGGQNLSMEMLARISDVLN 81 >gi|307711376|ref|ZP_07647794.1| peptidase S24-like family protein [Streptococcus mitis SK321] gi|307616794|gb|EFN95976.1| peptidase S24-like family protein [Streptococcus mitis SK321] Length = 228 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 10/103 (9%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQ+E+A A + +E G+ S + L N ++ + Sbjct: 5 EKLKARRKELKLTQREIAEQLGISFQAYSAWERGVKEPSKEKVVQLENILKVPKGYFTQI 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E++ + + K + + +SQ E + + Sbjct: 65 EIVRLYHSLSKQGQE----------KVVLYARNLSQEEQAQKV 97 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ RK+ ++Q E + LG+ S +E+G P + +++ + K + Sbjct: 1 MYQPEKLKARRKELKLTQREIAEQLGISFQAYSAWERGVKEPSKEKVVQLENILKVPKGY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|229083930|ref|ZP_04216233.1| Transcriptional regulator [Bacillus cereus Rock3-44] gi|228699365|gb|EEL52047.1| Transcriptional regulator [Bacillus cereus Rock3-44] Length = 80 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R + TQ+++A ++L E G + S+ L + + + ++ Sbjct: 17 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLELCLNICYALNQTLNDLFWE 76 Query: 94 EVID 97 E + Sbjct: 77 EGPN 80 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K R ++Q + + +G+ T+S E+G+ P ++ I + L+ +++ + Sbjct: 19 IKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLELCLNICYALNQTLNDLFWEE 77 >gi|163790416|ref|ZP_02184847.1| putative transcriptional regulator [Carnobacterium sp. AT7] gi|159874320|gb|EDP68393.1| putative transcriptional regulator [Carnobacterium sp. AT7] Length = 65 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R + +Q+++A N ++ E G + +I + + E+ ++ + ++ E Sbjct: 6 RLKVARTKKDMSQQQLADAVNVTRQTISAIERGDYNPTINLCIEICKEFNLTLNDLFWEE 65 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RLK R K MSQ + + + T+S E+G P I +I + L+ Sbjct: 1 MAKNLRLKVARTKKDMSQQQLADAVNVTRQTISAIERGDYNPTINLCIEICKEFNLTLND 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 LFWEE 65 >gi|150015772|ref|YP_001308026.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902237|gb|ABR33070.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 113 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ R N TQ E+A +++V+ +E+G + + + +EIS D++ Sbjct: 4 FADRLKEERIQKNLTQTELAKTLYLGQTSVSKYESGKQIPEMPTLQKIADFFEISIDYLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 I +D L L Sbjct: 64 GKTDIRNYTDDPNITIALHSDTDYDEL 90 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK R K ++Q E K L + +++S YE G+ IPE+ +KI + +D Sbjct: 1 MATFADRLKEERIQKNLTQTELAKTLYLGQTSVSKYESGKQIPEMPTLQKIADFFEISID 60 Query: 171 WIYFGDEV 178 ++ ++ Sbjct: 61 YLLGKTDI 68 >gi|319652450|ref|ZP_08006566.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317395912|gb|EFV76634.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 212 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +++ RK + +E+A A S ++ E G+ + SI+ L ++ + Sbjct: 36 DIGKKVEKFRKEKGYSSRELARIAEITPSMLSQIERGIANPSIQTLKVLAKALDVPTFSF 95 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + + +K + Sbjct: 96 LLEETNTEDLVVRFNERKHM 115 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG S E ++ + S LS E+G P I+ + + + Sbjct: 32 MENIDIGKKVEKFRKEKGYSSRELARIAEITPSMLSQIERGIANPSIQTLKVLAKALDVP 91 Query: 169 LDWIYFGDEVIVPKSIK 185 + ++ Sbjct: 92 TFSFLLEETNTEDLVVR 108 >gi|77458573|ref|YP_348078.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382576|gb|ABA74089.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1] Length = 215 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 33/84 (39%) Query: 4 NPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 + FL ++ + + + + + E + V ++ +R + + +A + + Sbjct: 7 SRFLASADEPVLDLNNLESLEEDPICERVAQNLQRLRGKRHLSLDALARQCGVSRAMLAQ 66 Query: 64 FENGMCSTSIRYALYLRNEYEISF 87 E+G SI+ + ++S Sbjct: 67 IESGRSVPSIKVLCKIAKGLKVSV 90 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + L+ +R + +S + G+ + L+ E GR++P IK KI + K + Sbjct: 32 CERVAQNLQRLRGKRHLSLDALARQCGVSRAMLAQIESGRSVPSIKVLCKIAKGLKVSVA 91 Query: 171 WIY 173 Sbjct: 92 AFL 94 >gi|118785|sp|P15017|DNU4_RHORU RecName: Full=Uncharacterized transcriptional regulator in ATPase CF(0) region; AltName: Full=URF4 gi|46375|emb|CAA31250.1| ORF 4 (AA 1 - 108); homolog. to DNA-binding proteins [Rhodospirillum rubrum] gi|152603|gb|AAA26459.1| pot. DNA-binding protein (URF4); putative [Rhodospirillum rubrum] Length = 108 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 23/76 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ R A Q+ +A + +E G S + + D+ + Sbjct: 16 VGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDIAKALAVPIDYFF 75 Query: 92 DGEVIDRRYEDVTNKK 107 D + Sbjct: 76 SDLERGDPRHDGLWPR 91 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R + Q + +G+ + YE+GR I + +D+ + Sbjct: 18 QRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDIAKALAVPIDYFFSD 77 Query: 176 DEVIVPK 182 E P+ Sbjct: 78 LERGDPR 84 >gi|116670514|ref|YP_831447.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116610623|gb|ABK03347.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 194 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 31/88 (35%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E+ VG R++ +R N T +++ + S ++ E+G ++ L L Sbjct: 1 MEIELDDVLGAVGPRLRALRTERNLTLGDVSSASGVSVSTLSRLESGQRRPNLELLLPLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKR 108 Y + D + + Sbjct: 61 RMYGVPLDDLVGAPPTGDPRIHLQPITH 88 Score = 40.3 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+++R ++ ++ + G+ STLS E G+ P ++ + ++ LD + Sbjct: 11 AVGPRLRALRTERNLTLGDVSSASGVSVSTLSRLESGQRRPNLELLLPLARMYGVPLDDL 70 Query: 173 Y 173 Sbjct: 71 V 71 >gi|313635327|gb|EFS01613.1| transcriptional regulator, putative [Listeria seeligeri FSL N1-067] gi|313640009|gb|EFS04664.1| transcriptional regulator, putative [Listeria seeligeri FSL S4-171] Length = 170 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 13/127 (10%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ ++G +K R TQKE A N + E G+ + S+ L + N Sbjct: 4 EKRDLSNIGKNLKAYRLELGATQKEFADELNINHQNYSKMERGIYTPSLEKLLEICNSLR 63 Query: 85 ISFDWIY----DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR---------KDKGMSQIE 131 I+ + + + + + ++ LD ++ IR +K + + Sbjct: 64 ITPNDLLLDNREYDEYKQEIFRELDEDILDLMREMKVVEEIRAKALKAKREGNKKLEEQY 123 Query: 132 FGKLLGM 138 ++G+ Sbjct: 124 LADIIGL 130 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ D IG LK+ R + G +Q EF L + + S E+G P ++ +I + Sbjct: 4 EKRDLSNIGKNLKAYRLELGATQKEFADELNINHQNYSKMERGIYTPSLEKLLEICNSLR 63 Query: 167 KHLDWIYFGD 176 + + + Sbjct: 64 ITPNDLLLDN 73 >gi|282866034|ref|ZP_06275082.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559073|gb|EFB64627.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 191 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T E V RI+ +R A+ + ++A + S ++ E G ++ + Sbjct: 1 MTQEGGDLDSLVRKRIRALRAAHGWSLDDLAARCHLSPSTLSRIETGHRRIALDQLTVIA 60 Query: 81 NEYEISFDWIYDGEVID 97 S D + + D Sbjct: 61 RALSTSLDQLVEAAPDD 77 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++++R G S + + STLS E G + I + LD + Sbjct: 13 RKRIRALRAAHGWSLDDLAARCHLSPSTLSRIETGHRRIALDQLTVIARALSTSLDQLVE 72 Query: 175 --GDEVIVPKSIKRAKG 189 D+V+ S A+G Sbjct: 73 AAPDDVVSHPSYDHARG 89 >gi|239814040|ref|YP_002942950.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239800617|gb|ACS17684.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 195 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++D+R + + +A S ++L E G S + L + ++ Sbjct: 12 IAQRVRDLRADRGLSLEALAAHCGVSRSMISLIERGESSPTAVLLEKLATGLGVPLASLF 71 Query: 92 D 92 + Sbjct: 72 E 72 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R D+G+S G+ S +S E+G + P K+ L ++ Sbjct: 14 QRVRDLRADRGLSLEALAAHCGVSRSMISLIERGESSPTAVLLEKLATGLGVPLASLF 71 >gi|148269420|ref|YP_001243880.1| cupin 2 domain-containing protein [Thermotoga petrophila RKU-1] gi|147734964|gb|ABQ46304.1| Cupin 2, conserved barrel domain protein [Thermotoga petrophila RKU-1] Length = 188 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R + TQ+E+A + S ++ E+ S SI + + Sbjct: 15 IGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 74 Query: 92 DGEVIDRRYEDVTNKKRL 109 +R + + Sbjct: 75 SDVEEERVVFKKEERVPV 92 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + IG +L+ +R KG++Q E + + S +S E +T P I +I + L Sbjct: 11 NFVRIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDL 70 Query: 170 DWIYFGDEVIVPKSIKRAK 188 + E K + Sbjct: 71 KHFFSDVEEERVVFKKEER 89 >gi|291005623|ref|ZP_06563596.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 200 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +R+ + E+A + + ++ E+G + +I L N + + Sbjct: 10 LAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSSLL 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 E +D V ++ + L+ +R+ Sbjct: 70 T-ERLDPEVVLVRSRGLEVLSSNAVDLRMLRRM 101 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A L+++R+ G+S E + G+ TLS E G P I+ + + + Sbjct: 12 ANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSSLLT- 70 Query: 176 DEVIVPKSI 184 E + P+ + Sbjct: 71 -ERLDPEVV 78 >gi|225389143|ref|ZP_03758867.1| hypothetical protein CLOSTASPAR_02889 [Clostridium asparagiforme DSM 15981] gi|225044801|gb|EEG55047.1| hypothetical protein CLOSTASPAR_02889 [Clostridium asparagiforme DSM 15981] Length = 73 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LKS R +SQ E + +G+ T+ E G+ P + I +V K LD +++ + Sbjct: 15 LKSARAALDLSQEELAEKVGVTRQTIGMIEAGKYNPTLNLCVAICKVLGKTLDDLFWEE 73 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R A + +Q+E+A + + E G + ++ + + + D ++ E Sbjct: 14 KLKSARAALDLSQEELAEKVGVTRQTIGMIEAGKYNPTLNLCVAICKVLGKTLDDLFWEE 73 >gi|134099786|ref|YP_001105447.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912409|emb|CAM02522.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 192 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +R+ + E+A + + ++ E+G + +I L N + + Sbjct: 2 LAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSSLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 E +D V ++ + L+ +R+ Sbjct: 62 T-ERLDPEVVLVRSRGLEVLSSNAVDLRMLRRM 93 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + A L+++R+ G+S E + G+ TLS E G P I+ + + + Sbjct: 1 MLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSSL 60 Query: 173 YFGDEVIVPKSI 184 E + P+ + Sbjct: 61 LT--ERLDPEVV 70 >gi|296131950|ref|YP_003639197.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296030528|gb|ADG81296.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 129 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 48/99 (48%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + K +D AIG R++ R+ +S+ +F +++G+ + + E+G ++ KI Sbjct: 1 MKKKSEIDNKAIGQRIREEREKLELSREKFAEIIGLSDYYVGQLERGERQMSLRVLFKIA 60 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + LD++ FG V ++ A+ + + K K+ Sbjct: 61 RCLHVSLDYLIFGKTVHDTYQVQDARNTYKAVEDNKYKE 99 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 35/97 (36%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + K +G RI++ R+ ++++ A + V E G S+R + Sbjct: 1 MKKKSEIDNKAIGQRIREEREKLELSREKFAEIIGLSDYYVGQLERGERQMSLRVLFKIA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 +S D++ G+ + Y+ + Sbjct: 61 RCLHVSLDYLIFGKTVHDTYQVQDARNTYKAVEDNKY 97 >gi|284028334|ref|YP_003378265.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283807627|gb|ADB29466.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 262 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 6/105 (5%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + VG ++ R+ +Q ++A V+ E G S L L + Sbjct: 4 EETFQRPVGELLRSWRERRRLSQLDLANQVEVSTRHVSFVETGRSKPSREMVLRLAEHLD 63 Query: 85 ISFDW----IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + G E + + AI L+ + K Sbjct: 64 VPLRDRNQLLLAGGYAPVYSEASLHSPVM--LAIRETLRRLLKAH 106 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+S R+ + +SQ++ + + +S E GR+ P + ++ + L Sbjct: 13 ELLRSWRERRRLSQLDLANQVEVSTRHVSFVETGRSKPSREMVLRLAEHLDVPL 66 >gi|283479602|emb|CAY75518.1| HTH-type transcriptional regulator ansR; Ans operon repressor protein [Erwinia pyrifoliae DSM 12163] Length = 140 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + G R+K++R +TQKE+A S N +E+GM + L + Sbjct: 14 QTEEQRRAFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELF 73 Query: 84 EISFDWIYDG 93 + D+ G Sbjct: 74 TTTIDYXLLG 83 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G RLK +R + +Q E L+G+ S + YE G IP + ++ ++ +D+ Sbjct: 21 AFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELFTTTIDYX 80 Query: 173 YFG 175 G Sbjct: 81 LLG 83 >gi|167755461|ref|ZP_02427588.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402] gi|167704400|gb|EDS18979.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402] Length = 426 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I RK TQ+++A + AV+ +ENG ++ L EI+ D + Sbjct: 17 KVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENG-GLPNVEILSDLAALLEITVDEL 75 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 G + + A +K K Sbjct: 76 LAGVEKELEGLSYSKAGV--DIAYSDAIKREMKQY 108 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 ++ ++ +G + RK+KG++Q + L + +S +E G +P ++ Sbjct: 1 MFIIKEKGGINMINVNKVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENGG-LPNVE 59 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVP------KSIKRAKGNQSSKKSKKDKKSSNP 205 + + + +D + G E + + A + ++ K+ K+S+P Sbjct: 60 ILSDLAALLEITVDELLAGVEKELEGLSYSKAGVDIAYSDAIKREMKQYLKTSDP 114 >gi|153955923|ref|YP_001396688.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348781|gb|EDK35317.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 104 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+ +RK + +Q ++AI N + +N E G SI + + + I+ Sbjct: 3 DIGNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAKPSIDLLIKICEFFSITLSEF 62 Query: 91 YDGEVIDRRYEDVTNKKRL 109 ++ K L Sbjct: 63 FNNGNNSEPVILNPQLKEL 81 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +RK +SQ + L + +T++ E+G P I KI + L + Sbjct: 10 KLRKLHKISQNKLAISLNVAAATINKIEKGTAKPSIDLLIKICEFFSITLSEFF 63 >gi|27802476|gb|AAO21114.1| unknown [Rhizobium leguminosarum bv. viciae] Length = 72 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 K VG+ +R+ TQ+E+ + + ++ E G + ++ L ++S Sbjct: 4 RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALDVS 61 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +R++KG++Q E G LS+ E+GR P + ++ Q Sbjct: 13 RLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALDVS 61 >gi|220931033|ref|YP_002507941.1| transcriptional regulator, XRE family [Halothermothrix orenii H 168] gi|219992343|gb|ACL68946.1| transcriptional regulator, XRE family [Halothermothrix orenii H 168] Length = 182 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 8/82 (9%), Positives = 32/82 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + ++G +++ +R + ++ A +S + E G + +++ + Sbjct: 1 MNEINANIGKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNK 106 + F + + E + + + Sbjct: 61 VPFSFFIEEETSPVKVFSPSKE 82 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +L+ +R KG S + ++ G+ S L E+G+T P +K K+ + + Sbjct: 10 KKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLNVPFSFFIEE 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSK 197 + V + S KK + Sbjct: 70 ETSPVKVFSPSKEVLVSGKKGR 91 >gi|332359913|gb|EGJ37727.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 120 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 28/85 (32%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N TQ +++ + + +E G + + Y +S D++ Sbjct: 4 ERLKALRLEANLTQNDVSRQFGVSQPTYSNWEKGEKKPTPDKYPKIAEFYNVSTDYLLGK 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 E + + L Sbjct: 64 SDYKNSDEIDLSTFEVLYRKTSKNL 88 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK++R + ++Q + + G+ T SN+E+G P KI + D++ Sbjct: 1 MFSERLKALRLEANLTQNDVSRQFGVSQPTYSNWEKGEKKPTPDKYPKIAEFYNVSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + I + +K+ K+ Sbjct: 61 LGKSDYKNSDEIDLSTFEVLYRKTSKNLSDE 91 >gi|325261429|ref|ZP_08128167.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032883|gb|EGB94160.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 67 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I++IR+ +KTQKE+A N ++ + +E G + + L + Y ++ D++ Sbjct: 4 ENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYLL 61 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I +++IR+DK +Q E L + +T S YE G+ ++ K+ + +D++ Sbjct: 1 MIYENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|325679912|ref|ZP_08159481.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108350|gb|EGC02597.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 135 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 32/74 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++ +R + +Q+ +A + V+ +E G + + N + ++ D++ Sbjct: 2 NIGDKLLFLRNRSGCSQENLADALDVSRQTVSKWELGQSLPDAEKIVAISNFFSVTTDFL 61 Query: 91 YDGEVIDRRYEDVT 104 + +++ Sbjct: 62 LRDTSPVKIEKNLD 75 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI- 179 +R G SQ L + T+S +E G+++P+ + I D++ + Sbjct: 10 LRNRSGCSQENLADALDVSRQTVSKWELGQSLPDAEKIVAISNFFSVTTDFLLRDTSPVK 69 Query: 180 VPKSIKRAKGNQSSKKSKKDKKSS 203 + K++ R ++ S DK S Sbjct: 70 IEKNLDRIVIEFANSASDLDKISK 93 >gi|187777057|ref|ZP_02993530.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC 15579] gi|187773985|gb|EDU37787.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC 15579] Length = 181 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I+++RK N T K++ S ++ EN S +I + + + + Sbjct: 4 EIAEKIRNLRKEKNLTLKDLGEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYF 63 Query: 91 YD 92 + Sbjct: 64 FK 65 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +++++RK+K ++ + G+ G+ S LS E + I +KI + + Sbjct: 3 NEIAEKIRNLRKEKNLTLKDLGEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITY 62 Query: 172 IYFGDEVIVPKSIKRAKG 189 + E+ K+ + Sbjct: 63 FFKSPELHKYLVKKQERE 80 >gi|86143064|ref|ZP_01061486.1| regulatory protein [Leeuwenhoekiella blandensis MED217] gi|85830509|gb|EAQ48968.1| regulatory protein [Leeuwenhoekiella blandensis MED217] Length = 244 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 38/96 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K +R++++ +QK++A + A +L ENG S + + L L Y + D I Sbjct: 3 ISKQLKTLRESSSLSQKKVAEELGITQGAYSLIENGQNSITTEHLLTLSKLYSVPTDRIL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 G L A R ++ Sbjct: 63 KGSHNSIMMSSSNGFVPLINVEARAGFIENRDNEQW 98 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I +LK++R+ +SQ + + LG+ S E G+ + + ++ D Sbjct: 1 MSISKQLKTLRESSSLSQKKVAEELGITQGAYSLIENGQNSITTEHLLTLSKLYSVPTDR 60 Query: 172 IYFG 175 I G Sbjct: 61 ILKG 64 >gi|331005361|ref|ZP_08328745.1| DNA-binding protein [gamma proteobacterium IMCC1989] gi|330420815|gb|EGG95097.1| DNA-binding protein [gamma proteobacterium IMCC1989] Length = 190 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 2/90 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD- 92 R+ ++RK N T ++A + S ++ E G + ++ + + +S + + Sbjct: 16 QRVTELRKKNKLTLIQLASLSGVSRSMLSQIERGQANPTLAVTFRIAQAFGMSIGELVEQ 75 Query: 93 -GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 G + L +++++ Sbjct: 76 AGNNPIIDVVHGEDPSNLFRSDKECQIRTL 105 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK ++ I+ L G+ S LS E+G+ P + +I Q + + ++ Sbjct: 20 ELRKKNKLTLIQLASLSGVSRSMLSQIERGQANPTLAVTFRIAQAFGMSIGELV--EQAG 77 Query: 180 VPKSIKRAKGNQSSKKSKKDKK 201 I G S + DK+ Sbjct: 78 NNPIIDVVHGEDPSNLFRSDKE 99 >gi|331090730|ref|ZP_08339577.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399838|gb|EGG79497.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium 2_1_46FAA] Length = 156 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ E+A + +++ +EN I L +I + Sbjct: 5 EIGDFISCCRKEKGLTQVELAEMLGVSDKSISRWENAKTMPDISLYEPLCEALDIQVAEL 64 Query: 91 YD-GEVIDRRYEDVTNKKRLDPYAIGARLK 119 ++ D + L+ + +LK Sbjct: 65 LYAKKMTDNEKAKQGEQSALNIFKTKLQLK 94 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 45/82 (54%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + IG + RK+KG++Q+E ++LG+ + ++S +E +T+P+I + + Sbjct: 1 MNQHEIGDFISCCRKEKGLTQVELAEMLGVSDKSISRWENAKTMPDISLYEPLCEALDIQ 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 + + + ++ + K+ + + Sbjct: 61 VAELLYAKKMTDNEKAKQGEQS 82 >gi|313674149|ref|YP_004052145.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312940847|gb|ADR20037.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 214 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G IK IR TQ ++A + ++ +E G I + ++++ D + Sbjct: 5 GENIKKIRSVRGLTQSQLADIIDVSRGVISSYEEGRAEPKIETIIKTAEVFQVTIDTLLK 64 Query: 93 GEVI 96 + Sbjct: 65 KNIT 68 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +K IR +G++Q + ++ + +S+YE+GR P+I+ K +V + +D Sbjct: 1 MSKYGENIKKIRSVRGLTQSQLADIIDVSRGVISSYEEGRAEPKIETIIKTAEVFQVTID 60 Query: 171 WIYF 174 + Sbjct: 61 TLLK 64 >gi|308068246|ref|YP_003869851.1| transcriptional regulator ydcN [Paenibacillus polymyxa E681] gi|305857525|gb|ADM69313.1| Putative HTH-type transcriptional regulator ydcN [Paenibacillus polymyxa E681] Length = 182 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 24/65 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+ + IRK + ++A + + E G + ++ + N +SF Sbjct: 8 IGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGKSNPTVTTLWKIANGLHVSFSTFL 67 Query: 92 DGEVI 96 + Sbjct: 68 KEDPP 72 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y IG+ L IRK +G+S + +L G+ L+ E+G++ P + KI Sbjct: 5 QYIIGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGKSNPTVTTLWKIANGLHVSFS 64 Query: 171 WIYFGDEVIVPKSIKR 186 D + K + Sbjct: 65 TFLKEDPPQITKIRRE 80 >gi|228474268|ref|ZP_04059003.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|314936712|ref|ZP_07844059.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] gi|228271627|gb|EEK12974.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|313655331|gb|EFS19076.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] Length = 179 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 38/88 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K++R+ N TQ+E+A + + ++ E+ S S+ L + + Sbjct: 2 QIGYKLKNLRRQKNLTQEELAERTDLSKGYISQIESEYASPSMETFLSILEVLGTTPSDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++ + + D Y G L Sbjct: 62 FKEKAKEKVLYKKSERTIYDEYDRGYIL 89 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK++R+ K ++Q E + + +S E P ++ I +V Sbjct: 1 MQIGYKLKNLRRQKNLTQEELAERTDLSKGYISQIESEYASPSMETFLSILEVLGTTPSD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + ++AK KKS++ Sbjct: 61 FFK----------EKAKEKVLYKKSER 77 >gi|258512333|ref|YP_003185767.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479059|gb|ACV59378.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 165 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 VG RI +RK TQ ++A A SA+ ++E R + + Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGV 63 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+ +RK++G++Q + + + S ++ YE R P+ + +I + + I Sbjct: 12 ERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGVEMTQI 68 >gi|167582978|ref|ZP_02375852.1| possible transcriptional regulator, XRE family protein [Burkholderia thailandensis TXDOH] Length = 115 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R +K+Q+ +A A+ + ++ E G+ + S+ + ++ ++ Sbjct: 26 LGKRIKQCRHEADKSQETLAFEAHVDRTYISAIERGIANPSVETLANICYSLNVTLAELF 85 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +R A +K R Sbjct: 86 ---APLDGVSLKPTGERRANAATPPEIKRSR 113 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K R + SQ + + +S E+G P ++ I L Sbjct: 24 IALGKRIKQCRHEADKSQETLAFEAHVDRTYISAIERGIANPSVETLANICYSLNVTLAE 83 Query: 172 IY 173 ++ Sbjct: 84 LF 85 >gi|330821781|ref|YP_004350643.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] gi|327373776|gb|AEA65131.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] Length = 186 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 27/85 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R A + + +A + S ++L E G S + L + ++ Sbjct: 7 IAERLRALRDARGWSLETLAEHSGVSRSNISLIERGQSSPTAVVLDKLATALAVPLSSLF 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + A Sbjct: 67 GESGESEAPSPIARAADQPLWTDPA 91 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+++R +G S + G+ S +S E+G++ P K+ L ++ Sbjct: 9 ERLRALRDARGWSLETLAEHSGVSRSNISLIERGQSSPTAVVLDKLATALAVPLSSLFGE 68 Query: 176 D-EVIVPKSIKRA 187 E P I RA Sbjct: 69 SGESEAPSPIARA 81 >gi|311897650|dbj|BAJ30058.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 201 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 4/119 (3%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Q +G R+++ R ++ T + A + ++ E G S+ L L Y Sbjct: 8 EDQEVAGLGARLRERRVSSRLTLEVAAARVGLSPAYLSRLETGRRQPSLPVLLGLARAYG 67 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 S + GE + A G + Q + +P ST Sbjct: 68 TSVAELL-GEQPGEPDPVIRGGAIEPGRAGGWGYRRAGAPGRAMQ---ALRVHVPPSTQ 122 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ARL+ R ++ +G+ + LS E GR P + + + + + G Sbjct: 17 ARLRERRVSSRLTLEVAAARVGLSPAYLSRLETGRRQPSLPVLLGLARAYGTSVAELL-G 75 Query: 176 DEVIVPKSIKR 186 ++ P + R Sbjct: 76 EQPGEPDPVIR 86 >gi|302385132|ref|YP_003820954.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302195760|gb|ADL03331.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 174 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 32/60 (53%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++RK +Q+E +++++ E G+ + S + + +E+ ++ +W+ G Sbjct: 3 NRIKEVRKKLGLSQEEFGKRLRVTKTSISKIEAGINNPSDQTIKLICSEFSVNEEWLRTG 62 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 4/93 (4%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +RK G+SQ EFGK L + +++S E G P + + I + +W+ Sbjct: 1 MNNRIKEVRKKLGLSQEEFGKRLRVTKTSISKIEAGINNPSDQTIKLICSEFSVNEEWLR 60 Query: 174 FG----DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 G D + + + +K + K D K Sbjct: 61 TGAGGQDNMFLSEDVKYIQNIGKLGTEKNDFKK 93 >gi|228931333|ref|ZP_04094262.1| Transcription regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828336|gb|EEM74042.1| Transcription regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 135 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I D RK NN +Q+++A A++ +E + I + L +E IS D + Sbjct: 2 KISKSILDYRKRNNLSQEQLASKIGVTRQAISKWEQEKGTPDIENLILLSDEMNISLDNL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + K + L Sbjct: 62 IKGNNSIKERIMNNEKAIKIHLLVILFL 89 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I + RK +SQ + +G+ +S +EQ + P+I+ + LD Sbjct: 1 MKISKSILDYRKRNNLSQEQLASKIGVTRQAISKWEQEKGTPDIENLILLSDEMNISLDN 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + G+ I + + K Sbjct: 61 LIKGNNSIKERIMNNEK 77 >gi|154496287|ref|ZP_02034983.1| hypothetical protein BACCAP_00574 [Bacteroides capillosus ATCC 29799] gi|150274370|gb|EDN01447.1| hypothetical protein BACCAP_00574 [Bacteroides capillosus ATCC 29799] Length = 74 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R+ + QKE+A N ++ + +E G + + L Y S D+I Sbjct: 5 ARIRALREDADLKQKELAAMLNLHQTTYSDYELGRLNVPAPVLIQLAGFYHTSVDYILGL 64 Query: 94 EVIDRRYED 102 + Y Sbjct: 65 TNVREPYPR 73 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D YA ++++R+D + Q E +L + +T S+YE GR ++ Sbjct: 1 MDMYAR---IRALREDADLKQKELAAMLNLHQTTYSDYELGRLNVPAPVLIQLAGFYHTS 57 Query: 169 LDWIYFGDEVIVP 181 +D+I V P Sbjct: 58 VDYILGLTNVREP 70 >gi|147676499|ref|YP_001210714.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146272596|dbj|BAF58345.1| predicted transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 75 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K R+ + N +++ +A N AV+ F NG S+ + L + +++S D+ Sbjct: 5 KIFAKRLSFLITKNKLSKQAVANAINVSRPAVSQFANGENLPSVEKLIALADFFDVSLDY 64 Query: 90 IYDGEVIDRRY 100 + RR+ Sbjct: 65 LVGRSDDPRRH 75 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 21/60 (35%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL + +S+ + + +S + G +P ++ + LD++ Sbjct: 7 FAKRLSFLITKNKLSKQAVANAINVSRPAVSQFANGENLPSVEKLIALADFFDVSLDYLV 66 >gi|94499248|ref|ZP_01305786.1| transcriptional regulator, Cro/CI family protein [Oceanobacter sp. RED65] gi|94428880|gb|EAT13852.1| transcriptional regulator, Cro/CI family protein [Oceanobacter sp. RED65] Length = 182 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVGTR+K++RK + +Q+E+A A S +++ E S S+ + +S Sbjct: 2 DVGTRLKEVRKKSGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLGGIPLSLTEF 61 Query: 91 YDGEVIDRRYEDV 103 ++ E + V Sbjct: 62 FETEDTSQTATPV 74 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KH 168 +G RLK +RK G+SQ E K G+ NST+S E+ P + +K V Sbjct: 1 MDVGTRLKEVRKKSGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKK---VLGGIPLS 57 Query: 169 LDWIYFGDEV 178 L + ++ Sbjct: 58 LTEFFETEDT 67 >gi|83644480|ref|YP_432915.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632523|gb|ABC28490.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 192 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +RK+ T +++A +N S ++ E G + + L I + + Sbjct: 10 LGKRIQQLRKSEKLTLEQLAQQSNVSRSMLSQIERGQANPTFATLWNLTRAMGIEWSELV 69 Query: 92 D 92 D Sbjct: 70 D 70 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 30/79 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK + ++ + + + S LS E+G+ P + + + Sbjct: 12 KRIQQLRKSEKLTLEQLAQQSNVSRSMLSQIERGQANPTFATLWNLTRAMGIEWSELVDE 71 Query: 176 DEVIVPKSIKRAKGNQSSK 194 E + I+ Q+ K Sbjct: 72 SEGVSHSPIEHIIAAQTPK 90 >gi|302390463|ref|YP_003826284.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] gi|302201091|gb|ADL08661.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] Length = 181 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I +RK T KE++ S ++ ENG S +I + + + Sbjct: 4 EIAEKISKLRKQKGLTLKELSEMTGLSVSFLSQVENGYSSLAITSLKKIADALNVPITEF 63 Query: 91 YDGEVIDRRYEDVTNKK 107 + + ++ +K Sbjct: 64 FSSYHNHSYHIKLSEQK 80 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ +RK KG++ E ++ G+ S LS E G + I +KI + Sbjct: 3 NEIAEKISKLRKQKGLTLKELSEMTGLSVSFLSQVENGYSSLAITSLKKIADALNVPITE 62 Query: 172 IY 173 + Sbjct: 63 FF 64 >gi|293385315|ref|ZP_06631128.1| DNA-binding protein [Enterococcus faecalis R712] gi|293386573|ref|ZP_06631156.1| DNA-binding protein [Enterococcus faecalis S613] gi|312908107|ref|ZP_07767087.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312979000|ref|ZP_07790720.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|291077421|gb|EFE14785.1| DNA-binding protein [Enterococcus faecalis R712] gi|291083978|gb|EFE20941.1| DNA-binding protein [Enterococcus faecalis S613] gi|310625918|gb|EFQ09201.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311288179|gb|EFQ66735.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 320 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K+ R+ TQ+ +A ++ ++ +ENG + + IS D + Sbjct: 19 IGNKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISIDDLL 78 Query: 92 D 92 D Sbjct: 79 D 79 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +LK R++ GM+Q + L +S +E G+ IP +I +D + Sbjct: 21 NKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISIDDLLDN 80 Query: 176 DEVIVPKSIK 185 + KS + Sbjct: 81 RRKHIEKSER 90 >gi|288553474|ref|YP_003425409.1| putative transcriptional regulator XRE [Bacillus pseudofirmus OF4] gi|288544634|gb|ADC48517.1| putative transcriptional regulator XRE [Bacillus pseudofirmus OF4] Length = 188 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 28/86 (32%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Q K +G R+K +R + +A + + E G + ++ + Sbjct: 2 EKEQLSKLIGVRLKALRVEQGYSLDHLAQITTVSKPMLGQIERGESNPTVGTLWKIAKGL 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + E + L Sbjct: 62 NVSFTSFLEEEQDAVTVVKKEEIEPL 87 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 26/69 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK++R ++G S ++ + L E+G + P + KI + ++ Sbjct: 14 LKALRVEQGYSLDHLAQITTVSKPMLGQIERGESNPTVGTLWKIAKGLNVSFTSFLEEEQ 73 Query: 178 VIVPKSIKR 186 V K Sbjct: 74 DAVTVVKKE 82 >gi|225571479|ref|ZP_03780475.1| hypothetical protein CLOHYLEM_07577 [Clostridium hylemonae DSM 15053] gi|225159955|gb|EEG72574.1| hypothetical protein CLOHYLEM_07577 [Clostridium hylemonae DSM 15053] Length = 361 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 31/87 (35%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G I+ +RK TQ++MA +AV+ +ENG+ I L + + Sbjct: 3 QQLGKTIQQMRKVQGCTQEQMAETLGVSVAAVSKWENGVSCPDITLLPALARYLKTDLNA 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + E + + Sbjct: 63 LLSFHEKISEQEAAAVVNEMSEIFFRS 89 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +RK +G +Q + + LG+ + +S +E G + P+I + + K L+ + Sbjct: 7 KTIQQMRKVQGCTQEQMAETLGVSVAAVSKWENGVSCPDITLLPALARYLKTDLNALLSF 66 Query: 176 DEVIVPKS 183 E I + Sbjct: 67 HEKISEQE 74 >gi|224503546|ref|ZP_03671853.1| hypothetical protein LmonFR_13737 [Listeria monocytogenes FSL R2-561] gi|313633537|gb|EFS00345.1| gp33 [Listeria seeligeri FSL N1-067] Length = 161 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 4/105 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLES-AVNLFENGMCSTSIRYALYLRNEYEISF 87 K + +++ +R + ++ E+A S + +E G I + + Y +S Sbjct: 1 MKTLSKKLEYLRNSKGWSKVEVAKRLGMKASSTYSNWEYGNREPDIDTLKRIADLYGVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 D++ + + +DP A L+ I Q E+ Sbjct: 61 DYLIGRDKNNLADTI---AAHIDPNATEEELEEILAYIEEKQKEY 102 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + +L+ +R KG S++E K LGM +ST SN+E G P+I ++I + + Sbjct: 1 MKTLSKKLEYLRNSKGWSKVEVAKRLGMKASSTYSNWEYGNREPDIDTLKRIADLYGVSV 60 Query: 170 DWIYFGDEVIVPKSI 184 D++ D+ + +I Sbjct: 61 DYLIGRDKNNLADTI 75 >gi|157373772|ref|YP_001472372.1| DNA-binding protein [Shewanella sediminis HAW-EB3] gi|157316146|gb|ABV35244.1| DNA-binding protein [Shewanella sediminis HAW-EB3] Length = 181 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I +K +R ++QIE ++ G+P +TL+N E + P I K+ Q +D + Sbjct: 5 INEGIKRLRAQHKLTQIELAEMAGIPRATLANMEGANSNPSISVVMKVAQALGVTVDDLI 64 Query: 174 FGDEVIVPKSIKRAKGNQS 192 + + ++R S Sbjct: 65 TRRQSVHVTKVERKDMPVS 83 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 27/83 (32%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK +R + TQ E+A A + + E + SI + + ++ D + Sbjct: 9 IKRLRAQHKLTQIELAEMAGIPRATLANMEGANSNPSISVVMKVAQALGVTVDDLITRRQ 68 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 + + G + Sbjct: 69 SVHVTKVERKDMPVSHQHDGKFI 91 >gi|167647481|ref|YP_001685144.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167349911|gb|ABZ72646.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 71 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 36 IKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 I+ +R + TQ ++A V E G S S+ A + + + D ++ E Sbjct: 11 IRRLRFEHGEMTQADLAQRIGMTRQTVAAIEQGKYSPSLEAAFRIAQVFGVGLDAVFRWE 70 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 114 IGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I ++ +R + G M+Q + + +GM T++ EQG+ P ++ A +I QV LD + Sbjct: 7 IRNDIRRLRFEHGEMTQADLAQRIGMTRQTVAAIEQGKYSPSLEAAFRIAQVFGVGLDAV 66 Query: 173 YFGD 176 + + Sbjct: 67 FRWE 70 >gi|317405899|gb|EFV86181.1| AroK1 protein [Achromobacter xylosoxidans C54] Length = 303 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 12/94 (12%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 E P + +G R++ +R T+K ++ E + E+G+ + SI Sbjct: 6 EDAAPTEPRREAFLVALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILV 65 Query: 76 ALYLRNEYEI------------SFDWIYDGEVID 97 L + + S DW+ E++ Sbjct: 66 LLQIAKAFNCALAELVGDVTTESPDWLLIRELLS 99 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 12/87 (13%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 ++ A+G R++ +R +GM++ ++ G+ L+N E G I +I Sbjct: 10 PTEPRREAFLVALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILVLLQI 69 Query: 162 KQVTKK------------HLDWIYFGD 176 + DW+ + Sbjct: 70 AKAFNCALAELVGDVTTESPDWLLIRE 96 >gi|315302888|ref|ZP_07873633.1| ans operon transcriptional repressor, putative [Listeria ivanovii FSL F6-596] gi|313628743|gb|EFR97131.1| ans operon transcriptional repressor, putative [Listeria ivanovii FSL F6-596] Length = 141 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/108 (11%), Positives = 37/108 (34%), Gaps = 1/108 (0%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNE 82 E + ++ R+ +R+ ++ E A S +E G+ + + Sbjct: 6 ERSEIMPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATL 65 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 Y++S D++ + + ++ + + +R + + Sbjct: 66 YDVSVDYLLGQQSMPTFAPSELESEKDIGKRMTKISEDLRNEDDLKLD 113 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPAR 159 ++ + RL +R+ +G S+ E + LG+ ST N+E G P+++ Sbjct: 1 MYNQTERSEIMPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVT 60 Query: 160 KIKQVTKKHLDWIY 173 +I + +D++ Sbjct: 61 QIATLYDVSVDYLL 74 >gi|284032140|ref|YP_003382071.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811433|gb|ADB33272.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 73 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 32 VGTRIKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V RI+ +R + TQ E+A V E G S S+ A + + + + + Sbjct: 6 VTNRIRALRTDHAELTQAELARRLGVTRQTVIAIEQGRYSPSLELAFQIAHVFGVPLADV 65 Query: 91 YDGEVIDR 98 + + Sbjct: 66 FQYPGEET 73 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Query: 109 LDPYAIGARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + P + R++++R D ++Q E + LG+ T+ EQGR P ++ A +I V Sbjct: 1 MKPTRVTNRIRALRTDHAELTQAELARRLGVTRQTVIAIEQGRYSPSLELAFQIAHVFGV 60 Query: 168 HLDWIYF--GDEV 178 L ++ G+E Sbjct: 61 PLADVFQYPGEET 73 >gi|212709591|ref|ZP_03317719.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM 30120] gi|212687767|gb|EEB47295.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEY 83 +++ + +G R+K IR++ +Q ++A S + +E G S AL + Sbjct: 1 MKKINEIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEAL 60 Query: 84 EISFDWIYDGEVIDR 98 +S + G+ D+ Sbjct: 61 GVSPAELMFGDRSDQ 75 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLKSIR+ +G+SQ + KL G S + NYE G A I + + F Sbjct: 10 ERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEALGVSPAELMF 69 Query: 175 GD 176 GD Sbjct: 70 GD 71 >gi|182435303|ref|YP_001823022.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775942|ref|ZP_08235207.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] gi|178463819|dbj|BAG18339.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656275|gb|EGE41121.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] Length = 509 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE- 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 3 DDYLVRIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDS 62 Query: 85 --ISFDW 89 +S + Sbjct: 63 EIVSLGY 69 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + + L S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|150015818|ref|YP_001308072.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902283|gb|ABR33116.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 120 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 +RK NN TQKE+++ +S+++ +E G + ++ L + + I+ + YD + Sbjct: 3 RLRKLNNLTQKELSLTIGISKSSISKYERGELFPTKEQSIKLASYFNINSKYFYDPYLES 62 Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 L+ K+ +++ + K L + TL Y +P Sbjct: 63 MDNFHQYLSTVLN------------KNIHINKDKLCKSLDISKRTLYRYCYQNNVPSRNI 110 Query: 158 ARKIKQVTKK 167 +++ Sbjct: 111 FDRMESYLNT 120 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +RK ++Q E +G+ S++S YE+G P + + K+ + + Y Sbjct: 3 RLRKLNNLTQKELSLTIGISKSSISKYERGELFPTKEQSIKLASYFNINSKYFY 56 >gi|222053821|ref|YP_002536183.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563110|gb|ACM19082.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 40/99 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +G RIK++RK TQ+++A V+ E G S S+ + + Sbjct: 1 MKTTKELLGARIKELRKLRKVTQEKLAEKIGVDPKYVSFIEVGRSSPSLEALENISQALD 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + +++ + R + + +LK + + Sbjct: 61 VEIKDLFEFSHHEARPASIDQIDSVLETVTDDQLKILHR 99 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 AR+K +RK + ++Q + + +G+ +S E GR+ P ++ I Q + ++ Sbjct: 10 ARIKELRKLRKVTQEKLAEKIGVDPKYVSFIEVGRSSPSLEALENISQALDVEIKDLF 67 >gi|320201133|gb|EFW75716.1| putative transcription regulator [Escherichia coli EC4100B] Length = 150 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 33/105 (31%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R+K++R A +Q+ A S ++ E G + S+ L N + + Sbjct: 4 QFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWQL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + ++ D L S R + + Sbjct: 64 LASDSSKDDDPELLVPYAADGSCFNPGLASSRDGSFGVGDKAAQK 108 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+K +R GMSQ F G S +S E+G + + + Sbjct: 3 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWQ 62 Query: 172 IYFGD 176 + D Sbjct: 63 LLASD 67 >gi|296450086|ref|ZP_06891848.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296878467|ref|ZP_06902473.1| XRE family transcriptional regulator [Clostridium difficile NAP07] gi|296261094|gb|EFH07927.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296430551|gb|EFH16392.1| XRE family transcriptional regulator [Clostridium difficile NAP07] Length = 78 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +RK Q++ A ++ ENG + S+ A + + +E+S + I+ + Sbjct: 21 LRKKKGLNQEDFAKILKVSRQTISSIENGKYNPSLELAFQISDFFEMSIEEIFLWKE 77 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 N + + ++++RK KG++Q +F K+L + T+S+ E G+ P ++ A +I Sbjct: 3 KGNFTMKEEIFLKNCVEALRKKKGLNQEDFAKILKVSRQTISSIENGKYNPSLELAFQIS 62 Query: 163 QVTKKHLDWIYFGDEV 178 + ++ I+ E+ Sbjct: 63 DFFEMSIEEIFLWKEI 78 >gi|295107669|emb|CBL05212.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I+ RK+ TQ ++A E AV +E+G+ + + + +S + + Sbjct: 3 VGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRTVKPELLESIADTLGVSVNAL 61 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ RK +GM+Q + + +G+ + +YE G + + I ++ Sbjct: 1 MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRTVKPELLESIADTLGVSVNA 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|281427978|ref|YP_003354932.1| XRE family DNA-binding protein [Lactococcus lactis subsp. lactis KF147] gi|281376605|gb|ADA66090.1| DNA-binding protein, XRE family [Lactococcus lactis subsp. lactis KF147] Length = 198 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ T + + RK TQ+E+A +++ +ENG I + L Y+ S D I Sbjct: 2 ELSTILVEERKKKGITQQEVADTLYITRQSLSNWENGKNFPDIPMLVELSKYYDFSLDII 61 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L RK KG++Q E L + +LSN+E G+ P+I ++ + LD Sbjct: 1 MELSTILVEERKKKGITQQEVADTLYITRQSLSNWENGKNFPDIPMLVELSKYYDFSLD- 59 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I GD ++ + K + + K +KK Sbjct: 60 IIKGDAQLMNQVQKDYELINTKKANKK 86 >gi|302864813|ref|YP_003833450.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501098|ref|YP_004079985.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302567672|gb|ADL43874.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315407717|gb|ADU05834.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 187 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P + ++VG RI+ +R + E+A A ++ ++ ENG+ + + + Sbjct: 5 APADDRGAREVGRRIRSLRTERGISLSELARLAGVGKATLSGLENGVRNPRLETLYAITA 64 Query: 82 EYEISF 87 + + Sbjct: 65 QLGVPL 70 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 R++S+R ++G+S E +L G+ +TLS E G P ++ I L Sbjct: 17 RRIRSLRTERGISLSELARLAGVGKATLSGLENGVRNPRLETLYAITAQLGVPL 70 >gi|228950623|ref|ZP_04112758.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067839|ref|ZP_04201157.1| Transcriptional regulator Xre [Bacillus cereus F65185] gi|229077365|ref|ZP_04210032.1| Transcriptional regulator Xre [Bacillus cereus Rock4-2] gi|229176675|ref|ZP_04304080.1| Transcriptional regulator Xre [Bacillus cereus 172560W] gi|229188360|ref|ZP_04315409.1| Transcriptional regulator Xre [Bacillus cereus ATCC 10876] gi|228595159|gb|EEK52929.1| Transcriptional regulator Xre [Bacillus cereus ATCC 10876] gi|228606842|gb|EEK64258.1| Transcriptional regulator Xre [Bacillus cereus 172560W] gi|228705944|gb|EEL58263.1| Transcriptional regulator Xre [Bacillus cereus Rock4-2] gi|228715323|gb|EEL67181.1| Transcriptional regulator Xre [Bacillus cereus F65185] gi|228809098|gb|EEM55582.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 82 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S S + + + +S + + Sbjct: 22 GRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIEELMP 81 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 RR E ++ G R+++ RK KG +Q F K LG+ S L E+G P Sbjct: 2 FTSRRNEKARGSNGMEAEKWGRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPS 61 Query: 155 IKPARKIKQVTKKHLDWIY 173 ++ + ++ + Sbjct: 62 QDFVVEVAKALNVSIEELM 80 >gi|182419511|ref|ZP_02950762.1| conserved domain protein [Clostridium butyricum 5521] gi|237666225|ref|ZP_04526212.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376641|gb|EDT74214.1| conserved domain protein [Clostridium butyricum 5521] gi|237658315|gb|EEP55868.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 73 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R M+Q E + +G+ T++ E+G P IK R I +V K LD +++ DE Sbjct: 7 IKVARAQLDMTQKELAERVGVSRQTMNAIEKGEYNPTIKLCRSICKVLGKKLDDLFWEDE 66 Query: 178 VIVP 181 Sbjct: 67 DNEK 70 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK R + TQKE+A +N E G + +I+ + D ++ + Sbjct: 7 IKVARAQLDMTQKELAERVGVSRQTMNAIEKGEYNPTIKLCRSICKVLGKKLDDLFWEDE 66 Query: 96 IDRRYED 102 + + E Sbjct: 67 DNEKVEK 73 >gi|167464988|ref|ZP_02330077.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 136 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 26/77 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + +R++ +Q E+A + N +EN + L Y +S D++ Sbjct: 3 FGKTLIQLRESKGLSQYEVAEKLGIKRARYNSWENEIAKPRHDMLHKLAEFYNVSPDYLL 62 Query: 92 DGEVIDRRYEDVTNKKR 108 E K Sbjct: 63 GYEKEKEAVPSWATTKD 79 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G L +R+ KG+SQ E + LG+ + +++E P K+ + D+ Sbjct: 1 MSFGKTLIQLRESKGLSQYEVAEKLGIKRARYNSWENEIAKPRHDMLHKLAEFYNVSPDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + ++ K A + ++ K K+D K Sbjct: 61 LLGYEKE------KEAVPSWATTKDKRDLKK 85 >gi|329732814|gb|EGG69161.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 77 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK+ R+ +Q+E A +V+ +E+ S+ + + + + I+ D + Sbjct: 2 KLAEAIKEQRELKGWSQEESANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHL 61 Query: 91 YDGE 94 G+ Sbjct: 62 IKGD 65 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R+ KG SQ E +L + ++S +E + P + + + LD Sbjct: 1 MKLAEAIKEQRELKGWSQEESANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDH 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LIKGD 65 >gi|328958145|ref|YP_004375531.1| transcriptional regulator for post-exponential-phase response [Carnobacterium sp. 17-4] gi|328674469|gb|AEB30515.1| transcriptional regulator for post-exponential-phase response [Carnobacterium sp. 17-4] Length = 180 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R N TQ+E+A N + ++ E + S+ + S Sbjct: 2 EIGNRIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKDF 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 +D + ++R ++ + Sbjct: 62 FDEKQEEQRVVYTNDEMTV 80 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E + + +S E+ ++P ++ I +V Sbjct: 1 MEIGNRIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + DE + + + + + Sbjct: 61 FF--DEKQEEQRVVYTNDEMTVYEDDE 85 >gi|327383388|gb|AEA54864.1| Transcriptional regulator [Lactobacillus casei LC2W] Length = 212 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +LK R+ + ++Q + + L + T+S++E R+ P+I +I Sbjct: 1 MKDMQFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKK 195 LD + D+ + K Q ++ Sbjct: 61 LDQLLREDQTMTDHYDAIDKHAQRDQR 87 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ TQ ++A + ++ +EN I + + + Y+IS D + Sbjct: 5 QFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQL 64 Query: 91 YDGEVIDRRYED 102 + + D Sbjct: 65 LREDQTMTDHYD 76 >gi|295705479|ref|YP_003598554.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294803138|gb|ADF40204.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 181 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +++ RK + +E+A A+ S ++ E G+ + SI L ++ Sbjct: 5 DIGKKVEKFRKEKGLSSRELAKLADITPSMLSQIERGLANPSISTLKLLAKSLDVPTFSF 64 Query: 91 YDGEVIDRRYEDVTNKKR 108 E+ +N+++ Sbjct: 65 LLEEINTSHLVVRSNERK 82 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK+KG+S E KL + S LS E+G P I + + + Sbjct: 1 MENIDIGKKVEKFRKEKGLSSRELAKLADITPSMLSQIERGLANPSISTLKLLAKSLDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 +E+ + R+ ++ K + +P Sbjct: 61 TFSFLL-EEINTSHLVVRSNERKTMKVKELKYSLLSP 96 >gi|299822098|ref|ZP_07053984.1| DNA-binding protein [Listeria grayi DSM 20601] gi|299815627|gb|EFI82865.1| DNA-binding protein [Listeria grayi DSM 20601] Length = 133 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK TQK++A + S ++ +E+G + L E + D++ Sbjct: 20 EFGQKVAQLRKKKRFTQKQLAERIDVTPSTISKYEHGTHRPPVFILAKLAEELGTTTDFL 79 Query: 91 YDG 93 + Sbjct: 80 LED 82 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++ +RK K +Q + + + + ST+S YE G P + K+ + D+ Sbjct: 19 MEFGQKVAQLRKKKRFTQKQLAERIDVTPSTISKYEHGTHRPPVFILAKLAEELGTTTDF 78 Query: 172 IY 173 + Sbjct: 79 LL 80 >gi|226314526|ref|YP_002774422.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226097476|dbj|BAH45918.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 189 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R KT K++A S ++ E G S ++ + +S + + Sbjct: 5 IGVLIKSLRVGKKKTLKQIAEKTQLSISFLSQVERGKSSITLESLKKISEALGVSPGYFF 64 Query: 92 DGEV 95 GE Sbjct: 65 SGES 68 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 35/75 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+R K + + + + S LS E+G++ ++ +KI + + + G+ Sbjct: 9 IKSLRVGKKKTLKQIAEKTQLSISFLSQVERGKSSITLESLKKISEALGVSPGYFFSGES 68 Query: 178 VIVPKSIKRAKGNQS 192 + ++RA +S Sbjct: 69 SGGNEQVRRASKERS 83 >gi|260880930|ref|ZP_05403166.2| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849947|gb|EEX69954.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 164 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K++R+ + +KE+A A +E G + + L ++I D + Sbjct: 12 FANRLKEVRERSGMKRKEVAEKLGITMQAYTCYEYGRREPRLSNLIKLSKIFDIPVDVLC 71 Query: 92 DGEVIDRRYED 102 +D + Sbjct: 72 SPYPVDMTIDS 82 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + ++ ++D RLK +R+ GM + E + LG+ + YE GR P + K+ Sbjct: 1 MIWSEYKMD-MVFANRLKEVRERSGMKRKEVAEKLGITMQAYTCYEYGRREPRLSNLIKL 59 Query: 162 KQVTKKHLDWI 172 ++ +D + Sbjct: 60 SKIFDIPVDVL 70 >gi|170754757|ref|YP_001781905.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119969|gb|ACA43805.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 78 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 40/76 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R++ G++Q + G+L+G+ ++ E G+ P I A I +V ++ ++ Sbjct: 1 MKNKLKQFRENLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVF 60 Query: 174 FGDEVIVPKSIKRAKG 189 +E ++++G Sbjct: 61 LFEESERKSRSEKSRG 76 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R+ TQ+++ A+N E G SI A + + + + ++ Sbjct: 3 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 94 EVIDRRYEDVTNK 106 E +R+ ++ Sbjct: 63 EESERKSRSEKSR 75 >gi|238792829|ref|ZP_04636460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909] gi|238727937|gb|EEQ19460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909] Length = 154 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 35/111 (31%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L Sbjct: 2 KKNLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALN 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + ++ + ++ D L S R + + Sbjct: 62 VEPWRLLVSDLSEDTDPELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQK 112 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 21/56 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 G R+K +R GMSQ F G S +S E+G + + + Sbjct: 7 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNV 62 >gi|219668134|ref|YP_002458569.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538394|gb|ACL20133.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 361 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G I RK + TQ+++A AV+ +E G I + + D + Sbjct: 4 DMGKVITAKRKEKSWTQEQLAQAVGVSTPAVSKWETGATYPDITLLPPIARALNTTVDEL 63 Query: 91 YDGEVI 96 + + Sbjct: 64 FSYQNE 69 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G + + RK+K +Q + + +G+ +S +E G T P+I I + +D ++ Sbjct: 5 MGKVITAKRKEKSWTQEQLAQAVGVSTPAVSKWETGATYPDITLLPPIARALNTTVDELF 64 Query: 174 FGDEVIVPKSI 184 + + Sbjct: 65 SYQNELSDNEV 75 >gi|323691709|ref|ZP_08105970.1| hypothetical protein HMPREF9475_00832 [Clostridium symbiosum WAL-14673] gi|323504253|gb|EGB20054.1| hypothetical protein HMPREF9475_00832 [Clostridium symbiosum WAL-14673] Length = 274 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 TQ++ A AV+ +E+G + L + ++ S D + G+V + ED T Sbjct: 1 MTQEQFAEQMEVSRQAVSKWESGQSYPEMEKLLQICEQFGCSMDSLIKGDVTEAAKEDST 60 Query: 105 NKKR 108 R Sbjct: 61 GYNR 64 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 M+Q +F + + + +S +E G++ PE++ +I + +D + GD K Sbjct: 1 MTQEQFAEQMEVSRQAVSKWESGQSYPEMEKLLQICEQFGCSMDSLIKGDVTEAAKE 57 >gi|238921831|ref|YP_002935345.1| hypothetical protein EUBELI_20064 [Eubacterium eligens ATCC 27750] gi|238873503|gb|ACR73211.1| Hypothetical protein EUBELI_20064 [Eubacterium eligens ATCC 27750] Length = 111 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 31/73 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K RK + Q +MA ++ ++ E G + S+ + ++ D++ Sbjct: 7 NIGPRLKQRRKEMHIKQIDMAKQLGVSQAFLSNVEAGRINCSLPLLTDICCILNVTPDYL 66 Query: 91 YDGEVIDRRYEDV 103 G + + Sbjct: 67 ILGHMRGNKASSD 79 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 10/87 (11%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK RK+ + QI+ K LG+ + LSN E GR + I + D++ G Sbjct: 12 LKQRRKEMHIKQIDMAKQLGVSQAFLSNVEAGRINCSLPLLTDICCILNVTPDYLILG-- 69 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +GN++S + K N Sbjct: 70 --------HMRGNKASSDLIDELKMCN 88 >gi|238025512|ref|YP_002909744.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237880177|gb|ACR32509.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 193 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 33/91 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G++I+ +R+ +T E A A + ++ E G+ S SI + ++ + Sbjct: 16 ELGSKIRALRQRLKRTLDETASAAGISKPFLSQVERGLASPSITSLAGIAQALGVNVQYF 75 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +R + + Sbjct: 76 VETPSEERSVCRGEQLRFFSFADSANLFARL 106 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R+ + E G+ LS E+G P I I Q ++ + Sbjct: 21 IRALRQRLKRTLDETASAAGISKPFLSQVERGLASPSITSLAGIAQALGVNVQYFV 76 >gi|225873562|ref|YP_002755021.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793885|gb|ACO33975.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 63 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R +Q ++A +VN E G S+ A L + + I+ Sbjct: 3 NRLRDLRAERGWSQADLAQELGVSRQSVNAIETGRFDPSLPLAFKLARLFGEPIEKIFVE 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R ++G SQ + + LG+ +++ E GR P + A K+ ++ + ++ I+ Sbjct: 1 MKNRLRDLRAERGWSQADLAQELGVSRQSVNAIETGRFDPSLPLAFKLARLFGEPIEKIF 60 Query: 174 FGD 176 + Sbjct: 61 VEE 63 >gi|288869818|ref|ZP_05976459.2| transcriptional regulator [Methanobrevibacter smithii DSM 2374] gi|288860382|gb|EFC92680.1| transcriptional regulator [Methanobrevibacter smithii DSM 2374] Length = 186 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 41/93 (44%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +Y K++G R+K++R+ ++ T ++ A + E+ +ENG + + N++++ Sbjct: 6 EYNKNIGNRVKELRELSDITIQDFAEELDIDETMYKQYENGEVDIPASFLCEIANKFQVD 65 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + GE DVT + K Sbjct: 66 LGLLLTGEETRMNIFDVTRADKGISVERRKEYK 98 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +R+ ++ +F + L + + YE G +I + L + G Sbjct: 13 NRVKELRELSDITIQDFAEELDIDETMYKQYENGEVDIPASFLCEIANKFQVDLGLLLTG 72 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +E + S + +K+ K N Sbjct: 73 EETRMNIFDVTRADKGISVERRKEYKYEN 101 >gi|225571103|ref|ZP_03780120.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM 15053] gi|225160184|gb|EEG72803.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM 15053] Length = 63 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK +G+ Q + G+ T+ E + P ++ A K+ ++ ++ ++ Sbjct: 1 MKNNIKQLRKSRGLRQEDLAARSGVSRQTIIAIENDKYNPTLELAMKLARLLDTTVEELF 60 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK +RK+ Q+++A + + EN + ++ A+ L + + + ++ Sbjct: 3 NNIKQLRKSRGLRQEDLAARSGVSRQTIIAIENDKYNPTLELAMKLARLLDTTVEELF 60 >gi|220934873|ref|YP_002513772.1| transcriptional regulator, XRE family [Thioalkalivibrio sp. HL-EbGR7] gi|219996183|gb|ACL72785.1| transcriptional regulator, XRE family [Thioalkalivibrio sp. HL-EbGR7] Length = 218 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E R + +G +++ R+A + T ++A A ++ ENG STS+ L Sbjct: 27 EDRNLDQHIGHVLREKRQAQSLTIADVADLAGVSRGMLSKIENGQVSTSLETLRKLSGVL 86 Query: 84 EISFDWIYD 92 ++ ++ Sbjct: 87 GMTLAQLFK 95 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + LD + IG L+ R+ + ++ + L G+ LS E G+ ++ RK+ V Sbjct: 27 EDRNLDQH-IGHVLREKRQAQSLTIADVADLAGVSRGMLSKIENGQVSTSLETLRKLSGV 85 Query: 165 TKKHLDWIYFGDEVIV--PKSIKRAKGNQSSKKSKK 198 L ++ +V + +K +G + ++ + Sbjct: 86 LGMTLAQLFKNFDVPEGGAQHVKSGEGLEVVRRGTR 121 >gi|299534219|ref|ZP_07047570.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] gi|298717866|gb|EFI58872.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] Length = 490 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 11/115 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R TQ +A S +N E ++ L + + Sbjct: 1 MGVRLRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQFS 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD-----------KGMSQIEFGKL 135 + E + + L +R+ M Q Sbjct: 61 EDEEARLLAQLRDAVAAMPQPEGSVPLPELREVAAKLPQLAQMLLAMHQRHLADA 115 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+S+R ++G++Q + L + S L+ EQ + + KI +V + +E Sbjct: 5 LRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQFSEDEE 64 Query: 178 VIVPKSIKRA 187 + ++ A Sbjct: 65 ARLLAQLRDA 74 >gi|291518928|emb|CBK74149.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 105 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ G +IK+ R TQ ++A ++ ENG + S+R +Y I+ D Sbjct: 2 NENYGEQIKNYRIGLGMTQNQVANALEVTPGYISNVENGRTAMSLRLLIYYSKLMGITLD 61 Query: 89 WIYDGEVIDRRYEDVTN-----KKRLDPYAIGARLKSIRKDK 125 + D + + N K LD LK+I+ + Sbjct: 62 ELVGNIEPDYKKSSIDNALWDVIKNLDNEQKEKLLKTIKLWQ 103 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 9/96 (9%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G ++K+ R GM+Q + L + +SN E GRT ++ ++ LD + Sbjct: 5 YGEQIKNYRIGLGMTQNQVANALEVTPGYISNVENGRTAMSLRLLIYYSKLMGITLDELV 64 Query: 174 FGDEVIVPKS---------IKRAKGNQSSKKSKKDK 200 E KS IK Q K K K Sbjct: 65 GNIEPDYKKSSIDNALWDVIKNLDNEQKEKLLKTIK 100 >gi|264677406|ref|YP_003277312.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262207918|gb|ACY32016.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 490 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 11/115 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R TQ +A S +N E ++ L + + Sbjct: 1 MGVRLRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQFS 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD-----------KGMSQIEFGKL 135 + E + + L +R+ M Q Sbjct: 61 EDEEARLLAQLRDAVAAMPQPEGSVPLPELREVAAKLPQLAQMLLAMHQRHLADA 115 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+S+R ++G++Q + L + S L+ EQ + + KI +V + +E Sbjct: 5 LRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQFSEDEE 64 Query: 178 VIVPKSIKRA 187 + ++ A Sbjct: 65 ARLLAQLRDA 74 >gi|288947755|ref|YP_003445138.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898271|gb|ADC64106.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 79 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 I ++ K++G R+K R Q E+A ++ ++ +E G + I A+ L Sbjct: 2 NIEEFRKELGHRLKVRRTELGLNQTELAERIGLTQAYISQWELGTRAMRIEQAVVLTQAL 61 Query: 84 EISFDWIYDGEVIDR 98 + + + + + Sbjct: 62 NTTLGALVGEDNLSQ 76 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R + G++Q E + +G+ + +S +E G I+ A + Q L + Sbjct: 12 HRLKVRRTELGLNQTELAERIGLTQAYISQWELGTRAMRIEQAVVLTQALNTTLGALVGE 71 Query: 176 D 176 D Sbjct: 72 D 72 >gi|229030114|ref|ZP_04186176.1| Transcriptional regulator, XRE [Bacillus cereus AH1271] gi|228731172|gb|EEL82092.1| Transcriptional regulator, XRE [Bacillus cereus AH1271] Length = 197 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 10/113 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 17 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 76 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 D + + ++ N + +K+ + M + K Sbjct: 77 INEIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNKQAK 129 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ +E+ Sbjct: 24 YRKKNNMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLFI-NEIDT 82 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 83 DSLISKKKDRKKVYRENND 101 >gi|192361034|ref|YP_001984168.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190687199|gb|ACE84877.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] Length = 72 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q K G R++ +R A TQ+++A +++ E G+ S L + Sbjct: 2 QLKKQFGKRVQQLRFARKMTQEQLAERVGITIESISNIERGIYGPSFDTLEKLAIALRVP 61 Query: 87 FDWIY 91 ++ Sbjct: 62 VQSLF 66 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R++ +R + M+Q + + +G+ ++SN E+G P K+ + + ++ Sbjct: 7 FGKRVQQLRFARKMTQEQLAERVGITIESISNIERGIYGPSFDTLEKLAIALRVPVQSLF 66 Query: 174 FGDEVI 179 DE + Sbjct: 67 AFDEPL 72 >gi|75759013|ref|ZP_00739121.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493479|gb|EAO56587.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 70 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 32/70 (45%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++D + +K +RK ++Q+E K + + T+ E P ++ + KI + Sbjct: 1 MKVDSMGVKNIIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFG 60 Query: 167 KHLDWIYFGD 176 ++ I+ + Sbjct: 61 VKVEEIFTLE 70 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 IK++RK N+ TQ EMA + EN + S+ +L + + + + I+ E Sbjct: 12 IKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTLE 70 >gi|30263988|ref|NP_846365.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Ames] gi|49186829|ref|YP_030081.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|50196954|ref|YP_052642.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|65321313|ref|ZP_00394272.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165872120|ref|ZP_02216759.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167633504|ref|ZP_02391828.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|167640973|ref|ZP_02399230.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|170688808|ref|ZP_02880012.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|170705742|ref|ZP_02896205.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|177654324|ref|ZP_02936253.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] gi|190566003|ref|ZP_03018922.1| prophage LambdaBa02, repressor protein [Bacillus anthracis Tsiankovskii-I] gi|227816690|ref|YP_002816699.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CDC 684] gi|229604569|ref|YP_002868219.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0248] gi|254683682|ref|ZP_05147542.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CNEVA-9066] gi|254721519|ref|ZP_05183308.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A1055] gi|254736027|ref|ZP_05193733.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Western North America USA6153] gi|254743918|ref|ZP_05201601.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Kruger B] gi|254754303|ref|ZP_05206338.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Vollum] gi|254758006|ref|ZP_05210033.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Australia 94] gi|30258632|gb|AAP27851.1| prophage LambdaBa02, repressor protein [Bacillus phage lambda Ba03] gi|49180756|gb|AAT56132.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|50083016|gb|AAT70150.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164712067|gb|EDR17605.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167511023|gb|EDR86412.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|167530910|gb|EDR93597.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|170129282|gb|EDS98146.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|170667324|gb|EDT18083.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|172080814|gb|EDT65895.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] gi|190562922|gb|EDV16888.1| prophage LambdaBa02, repressor protein [Bacillus anthracis Tsiankovskii-I] gi|227006247|gb|ACP15990.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CDC 684] gi|229268977|gb|ACQ50614.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0248] Length = 122 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN--------QLESAVNLFENGMCSTSIRYALYLRNEY 83 +G RIK RK TQ +A+ ++ ++ +E G S S + + + Sbjct: 4 LGQRIKLSRKKRGLTQDALALKIKEKMDTETKVTKTTISNYETGYSSPSNETLVIISDVL 63 Query: 84 EISFDWIYDGEVIDR 98 +S D++ Sbjct: 64 NVSVDYLLGRSDDPE 78 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 8/88 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLG--------MPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 R+K RK +G++Q + + +T+SNYE G + P + I V Sbjct: 6 QRIKLSRKKRGLTQDALALKIKEKMDTETKVTKTTISNYETGYSSPSNETLVIISDVLNV 65 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 +D++ + +++ + + + Sbjct: 66 SVDYLLGRSDDPELNAVQFTELRKEFNE 93 >gi|310830110|ref|YP_003962467.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308741844|gb|ADO39504.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 110 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 28/75 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G I++ R TQ ++A + + +++ E G + + + E+ Sbjct: 3 NKVIGRHIREARLDKKLTQYQLAERVHITPNYLSMLERGTHLPKLETLITISEALEVPVS 62 Query: 89 WIYDGEVIDRRYEDV 103 + ++ + Sbjct: 63 ALLTDFPVESFTSRI 77 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 32/67 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG ++ R DK ++Q + + + + + LS E+G +P+++ I + + Sbjct: 1 MDNKVIGRHIREARLDKKLTQYQLAERVHITPNYLSMLERGTHLPKLETLITISEALEVP 60 Query: 169 LDWIYFG 175 + + Sbjct: 61 VSALLTD 67 >gi|302878682|ref|YP_003847246.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581471|gb|ADL55482.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 124 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 6/100 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I + RK N TQ E+A V+ FE G S+ L +I + Sbjct: 16 LGANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYKLV 75 Query: 92 DGEVIDRRYEDVTNKKRL------DPYAIGARLKSIRKDK 125 + ++ + D LK + Sbjct: 76 AASSPRHDDQSFILEEWMSELTPKDREFAMNTLKQLCAHL 115 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A + RK +Q E + +G+ T+S +E+G +P + K+ + K L + Sbjct: 18 ANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYKLV 75 >gi|227356569|ref|ZP_03840956.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227163325|gb|EEI48252.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 113 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG +I R+ N T E+A + + +E G+ S+ + IS Sbjct: 25 KMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACFFGISLSD 84 Query: 90 IYDGEVIDRRYEDVT 104 ++ + ++ + Sbjct: 85 LFQLDDEEKVEIENK 99 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 1/95 (1%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 N+ +G ++ R+ G++ E K +G+ S YE+G + + Sbjct: 16 QVNRSYPASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYA 75 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 L ++ D+ I+ N K++ Sbjct: 76 CFFGISLSDLFQLDDE-EKVEIENKISNMVGNKNE 109 >gi|254439667|ref|ZP_05053161.1| Cupin domain protein [Octadecabacter antarcticus 307] gi|198255113|gb|EDY79427.1| Cupin domain protein [Octadecabacter antarcticus 307] Length = 189 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +RKA T + + ++ E SI Y+ + ++S ++ Sbjct: 12 LGADIRALRKARGLTLSGLGETLGRSVGWLSQVERDKSEPSISDLRYIASALDVSVSSLF 71 Query: 92 DGEVID 97 E + Sbjct: 72 RSEAPE 77 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A ++++RK +G++ G+ LG LS E+ ++ P I R I + ++ Sbjct: 14 ADIRALRKARGLTLSGLGETLGRSVGWLSQVERDKSEPSISDLRYIASALDVSVSSLFRS 73 Query: 176 D 176 + Sbjct: 74 E 74 >gi|167751804|ref|ZP_02423931.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] gi|167660045|gb|EDS04175.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] Length = 224 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K +RK TQ+++A ++A+++ E G + S R L E ++ DW+ Sbjct: 3 GDRLKLLRKTIGLTQEQLAQRLGIGKAALSMIETGKAALSSRNKNILVQELNVNPDWLDS 62 Query: 93 GEVIDRRYEDV 103 GE E Sbjct: 63 GEGEMFNAEPD 73 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK +RK G++Q + + LG+ + LS E G+ + + Q + DW+ Sbjct: 1 MTGDRLKLLRKTIGLTQEQLAQRLGIGKAALSMIETGKAALSSRNKNILVQELNVNPDWL 60 Query: 173 YFGDEVI 179 G+ + Sbjct: 61 DSGEGEM 67 >gi|148272408|ref|YP_001221969.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830338|emb|CAN01272.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 209 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+ +R+A + +A S ++ E G ++ + + E S D + + Sbjct: 13 QRIRSLREARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIAQALETSLDALIE 71 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY- 173 R++S+R+ +G S + STLS E G + I Q + LD + Sbjct: 12 RQRIRSLREARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIAQALETSLDALIE 71 Query: 174 FGDE 177 GD+ Sbjct: 72 SGDD 75 >gi|313624590|gb|EFR94572.1| DNA-binding protein [Listeria innocua FSL J1-023] Length = 180 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 DIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|268609938|ref|ZP_06143665.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 124 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+ I D+RK TQK++AI N E+ + +E G+ + + +S D+I Sbjct: 11 GSIISDLRKNFGLTQKQLAIAFNVSEATIAHYEQGISVPPNDMLKRYADFFHVSTDYILG 70 Query: 93 GEVIDRRYEDVTN 105 ++++ Y ++ Sbjct: 71 RNMLNKDYSNLNE 83 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + +RK+ G++Q + + +T+++YEQG ++P ++ D+I Sbjct: 12 SIISDLRKNFGLTQKQLAIAFNVSEATIAHYEQGISVPPNDMLKRYADFFHVSTDYIL 69 >gi|260906368|ref|ZP_05914690.1| hypothetical protein BlinB_13653 [Brevibacterium linens BL2] Length = 180 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +R++ T +++ A + ++ E G + + L + +++ + Sbjct: 1 MGALIRSLRESAGMTLTDLSRMAGVSQGLLSQIERGRGNPAYLTLLKIAKAFDVPVGRFF 60 Query: 92 --DGEVIDRRYEDVTNKKRL 109 GE D R +++L Sbjct: 61 GSGGEPADNRVVRADKRRQL 80 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +GA ++S+R+ GM+ + ++ G+ LS E+GR P KI + + + Sbjct: 1 MGALIRSLRESAGMTLTDLSRMAGVSQGLLSQIERGRGNPAYLTLLKIAKAFDVPVGRFF 60 Query: 174 -FGDEVIVPKSIKRAKGNQ 191 G E + ++ K Q Sbjct: 61 GSGGEPADNRVVRADKRRQ 79 >gi|269794016|ref|YP_003313471.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269096201|gb|ACZ20637.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 489 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 2/124 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R T +++A S ++ ENG+ + + + + Sbjct: 16 LGRRVRHFRTGAGLTLEDLAERTGVDTSQLSRIENGLREPRLSLLDAVAGALGVPVATLL 75 Query: 92 DGEVIDRRY--EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 RR E ++ + DP+ L +R + + L+G+ Q Sbjct: 76 ASTPPTRRAGLEIELDRAQRDPFYPTLGLPPVRPSQRLPLPVLENLVGLHRELARRATQA 135 Query: 150 RTIP 153 P Sbjct: 136 VATP 139 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 24/64 (37%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G R++ R G++ + + G+ S LS E G P + + + Sbjct: 12 DLLTLGRRVRHFRTGAGLTLEDLAERTGVDTSQLSRIENGLREPRLSLLDAVAGALGVPV 71 Query: 170 DWIY 173 + Sbjct: 72 ATLL 75 >gi|168215895|ref|ZP_02641520.1| transcriptional regulator, Cro/CI family [Clostridium perfringens NCTC 8239] gi|182382138|gb|EDT79617.1| transcriptional regulator, Cro/CI family [Clostridium perfringens NCTC 8239] Length = 170 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK IRK TQKE A N+ E + +EN I + +ISF + Sbjct: 3 NIGDKIKAIRKERGLTQKEFAKKINKSERMIQKYENSEVEPRIEVLREIATALDISFSEL 62 Query: 91 YDGEVIDRRYED 102 + + + Sbjct: 63 INPKNSSINISE 74 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++K+IRK++G++Q EF K + + YE P I+ R+I Sbjct: 1 MLNIGDKIKAIRKERGLTQKEFAKKINKSERMIQKYENSEVEPRIEVLREIATALDISFS 60 Query: 171 WIY 173 + Sbjct: 61 ELI 63 >gi|320160947|ref|YP_004174171.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1] gi|319994800|dbj|BAJ63571.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1] Length = 206 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + DVG R++ +R+ N + + +A + +A+++ E GM S S+ L Sbjct: 5 DKQAESIDVGQRLRALREERNISIRALARLSGLSANALSMIERGMTSPSVSTLNKLAIAL 64 Query: 84 EISF 87 ++ Sbjct: 65 KVPV 68 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 K+ + +G RL+++R+++ +S +L G+ + LS E+G T P + K+ Sbjct: 1 MEGFDKQAESIDVGQRLRALREERNISIRALARLSGLSANALSMIERGMTSPSVSTLNKL 60 Query: 162 KQVTKKHLDWIY 173 K + + Sbjct: 61 AIALKVPVTAFF 72 >gi|296110846|ref|YP_003621227.1| hypothetical protein LKI_03580 [Leuconostoc kimchii IMSNU 11154] gi|295832377|gb|ADG40258.1| hypothetical protein LKI_03580 [Leuconostoc kimchii IMSNU 11154] Length = 296 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +R+ N +Q+ +A +V+ +E+G I + L + +++ G Sbjct: 7 SQLSLLRQKKNLSQEALAQKLYVSRQSVSKWEHGDAEPDIAKLISLAEILAVDLNFLLSG 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + +++ LK I Sbjct: 67 QQSNED--LIIQLQKISKKFSKTVLKEI 92 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 38/85 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++L +R+ K +SQ + L + ++S +E G P+I + ++ L++ Sbjct: 3 NVFKSQLSLLRQKKNLSQEALAQKLYVSRQSVSKWEHGDAEPDIAKLISLAEILAVDLNF 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + G + I+ K ++ K+ Sbjct: 63 LLSGQQSNEDLIIQLQKISKKFSKT 87 >gi|239637715|ref|ZP_04678683.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596674|gb|EEQ79203.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 66 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R +Q+E+A +N+ EN + S++ + + ++ + ++ Sbjct: 5 NRVKQYRAHQKMSQQELARRIGVSRQTINMIENDKYNPSLKLCINIAKVLSVTLNDLF 62 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R+K R + MSQ E + +G+ T++ E + P +K I +V L+ Sbjct: 1 MIALNRVKQYRAHQKMSQQELARRIGVSRQTINMIENDKYNPSLKLCINIAKVLSVTLND 60 Query: 172 IYFG 175 +++ Sbjct: 61 LFWE 64 >gi|313116911|ref|YP_004038035.1| transcriptional regulator, XRE family [Halogeometricum borinquense DSM 11551] gi|312294863|gb|ADQ68899.1| transcriptional regulator, XRE family [Halogeometricum borinquense DSM 11551] Length = 65 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +++ RKA TQ ++A + ++N E G + S+ AL L E++ + + ++ E Sbjct: 5 VRERRKAREMTQGDLADAVDVTRQSINAIERGRYNPSLELALKLAVEFDCAVEDLFWLES 64 Query: 96 I 96 Sbjct: 65 D 65 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ RK + M+Q + + + +++ E+GR P ++ A K+ ++ ++ Sbjct: 1 MKNSVRERRKAREMTQGDLADAVDVTRQSINAIERGRYNPSLELALKLAVEFDCAVEDLF 60 Query: 174 FGD 176 + + Sbjct: 61 WLE 63 >gi|223982665|ref|ZP_03632897.1| hypothetical protein HOLDEFILI_00171 [Holdemania filiformis DSM 12042] gi|223965364|gb|EEF69644.1| hypothetical protein HOLDEFILI_00171 [Holdemania filiformis DSM 12042] Length = 698 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +RK N +Q+ +A A +ENG + + + L + + IS D + Sbjct: 6 EKLTQLRKYNGFSQQTVAEKAQVSVLDYMAWENGRAIPDVDHLILLADCFNISLDEMIRN 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGA 116 EV +D+ + Sbjct: 66 EVPVLPEKDLHETLDIPFMKKPE 88 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +L +RK G SQ + + +E GR IP++ + LD Sbjct: 1 MNKLPEKLTQLRKYNGFSQQTVAEKAQVSVLDYMAWENGRAIPDVDHLILLADCFNISLD 60 Query: 171 WIYFGDEVIVPK 182 + + ++P+ Sbjct: 61 EMIRNEVPVLPE 72 >gi|295838235|ref|ZP_06825168.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. SPB74] gi|197698209|gb|EDY45142.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. SPB74] Length = 291 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+A N T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDL 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHTFGD 94 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ + M+ E + L + S +S E GR + R + V + Sbjct: 16 QELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 >gi|139437169|ref|ZP_01771329.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] gi|133776816|gb|EBA40636.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] Length = 208 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + TR+K IR + TQ E+A AV +E+G + L ++ + + Sbjct: 4 EFSTRLKRIRLDSGLTQAELADKLGITNRAVGAWESGRSKPRLDKMKELAVLFDTTVADL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 + + + L +A Sbjct: 64 MGEDAAEAAISGTSRMVPLLGFA 86 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK IR D G++Q E LG+ N + +E GR+ P + +++ + + Sbjct: 3 MEFSTRLKRIRLDSGLTQAELADKLGITNRAVGAWESGRSKPRLDKMKELAVLFDTTVAD 62 Query: 172 IYFGD 176 + D Sbjct: 63 LMGED 67 >gi|15485444|emb|CAC67538.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 111 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K++RK + TQ E+A ++S+ +E G + + + +S D++ Sbjct: 2 EFSERLKELRKQAHLTQVELASKLGIVQSSYADWERGKKKPTQENLVKIAQILNVSVDYL 61 Query: 91 YDGEVIDRRYEDVTN 105 D Sbjct: 62 VGNSEEKNDELDNIE 76 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +RK ++Q+E LG+ S+ +++E+G+ P + KI Q+ +D+ Sbjct: 1 MEFSERLKELRKQAHLTQVELASKLGIVQSSYADWERGKKKPTQENLVKIAQILNVSVDY 60 Query: 172 IY-----FGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DE+ + + R S + KK K Sbjct: 61 LVGNSEEKNDELDNIELLFRMNSKGLSDEEKKIFKKE 97 >gi|329116195|ref|ZP_08244912.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906600|gb|EGE53514.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 128 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 30/67 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +RK + +Q E+A A++ +E G + + + + ++ +++ G Sbjct: 7 QQLVKLRKEKHFSQDELAEKLFISRQAISKWERGEVTPDLAKIEQIGEVFGVTTEFLLFG 66 Query: 94 EVIDRRY 100 + + + Sbjct: 67 KNFEDTW 73 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +L +RK+K SQ E + L + +S +E+G P++ +I +V +++ Sbjct: 5 FSQQLVKLRKEKHFSQDELAEKLFISRQAISKWERGEVTPDLAKIEQIGEVFGVTTEFLL 64 Query: 174 FG---DEVIVPKSIKRAKGNQSSKKSKKDK 200 FG ++ +S K + + + K+++ Sbjct: 65 FGKNFEDTWGVESFKYEEFQNIADEKKEER 94 >gi|324324351|gb|ADY19611.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 120 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+IR + TQ++ A + + V+ E+G + S + N +S D+I Sbjct: 5 IGKRIKEIRMSIGYTQQQFADSVDISKPMVSYIESGKKTPSRETVSKISNLANVSTDYIM 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + L+ R+ Sbjct: 65 GLSDNKTNEKSSASDVMLELKYYIDRM 91 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K IR G +Q +F + + +S E G+ P + KI + D+I Sbjct: 7 KRIKEIRMSIGYTQQQFADSVDISKPMVSYIESGKKTPSRETVSKISNLANVSTDYIM 64 >gi|291545509|emb|CBL18617.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 110 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G+RIK +R A N TQ+++A E+G+ S ++ + ++ Sbjct: 2 NEMLGSRIKALRSAKNFTQEQVADQIGVSRQKYARIESGVNSVTLDILSKVAEVLGVTVG 61 Query: 89 WI 90 I Sbjct: 62 DI 63 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G+R+K++R K +Q + +G+ + E G + K+ +V + I Sbjct: 4 MLGSRIKALRSAKNFTQEQVADQIGVSRQKYARIESGVNSVTLDILSKVAEVLGVTVGDI 63 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 V+ + + + SKK Sbjct: 64 ---TRVLDESPVVEYRAGEEGASSKK 86 >gi|270262620|ref|ZP_06190891.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043304|gb|EFA16397.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 462 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ + +G RI+ R+A + + ++A A + V+ E G S + L Sbjct: 274 MNNKLDNINQRIGARIRIEREARHWSLSDLAERAGVSRAMVHKIERGDSSPTAMLLARLS 333 Query: 81 NEYEISFDWIY 91 + +S + Sbjct: 334 GAFGLSMSKLI 344 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 Y D+ NK IGAR++ R+ + S + + G+ + + E+G + P Sbjct: 268 PLSYYDMNNKLDNINQRIGARIRIEREARHWSLSDLAERAGVSRAMVHKIERGDSSPTAM 327 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAK 188 ++ + + E + ++R Sbjct: 328 LLARLSGAFGLSMSKLIARAETQEGRLLRRED 359 >gi|163815728|ref|ZP_02207100.1| hypothetical protein COPEUT_01909 [Coprococcus eutactus ATCC 27759] gi|158449033|gb|EDP26028.1| hypothetical protein COPEUT_01909 [Coprococcus eutactus ATCC 27759] Length = 298 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I + RK TQ+++A + + +V+ +E G+C + + L EIS + Sbjct: 5 KIGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGICLPDVSVYMELCKILEISINEF 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 GE I + + L Sbjct: 65 LAGEDISEDSVREKSDETL 83 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + RK ++Q + LG + ++S +E+G +P++ ++ ++ + Sbjct: 1 MDIAKIGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGICLPDVSVYMELCKILEIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN--QSSKKSKKDKK 201 ++ G+++ +++ Q SK+ K +K Sbjct: 61 INEFLAGEDISEDSVREKSDETLLQVSKEGKNKQK 95 >gi|119871924|ref|YP_929931.1| XRE family transcriptional regulator [Pyrobaculum islandicum DSM 4184] gi|119673332|gb|ABL87588.1| transcriptional regulator, XRE family [Pyrobaculum islandicum DSM 4184] Length = 516 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+ ++R+ + +A A +S + EN S SI + N + F + Sbjct: 4 KLGNRLSELRRRKGLSLSRLARLAGVSKSTLWEIENDKISPSINTLWAIANALGVPFGEL 63 Query: 91 YDGE 94 + Sbjct: 64 VTYD 67 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 33/85 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G RL +R+ KG+S +L G+ STL E + P I I Sbjct: 3 YKLGNRLSELRRRKGLSLSRLARLAGVSKSTLWEIENDKISPSINTLWAIANALGVPFGE 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + D V+ + ++ + K Sbjct: 63 LVTYDIVVKDEGVEVRLIERVENKE 87 >gi|220930676|ref|YP_002507585.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220001004|gb|ACL77605.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 60 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R++ N TQ E+A + +++ ENG S+ L + S D + Sbjct: 2 KKLKQARESKNLTQSELASRTGISQQHISMIENGERIGSVETLRELAKALDTSVDQLL 59 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +LK R+ K ++Q E G+ +S E G I ++ R++ + +D + Sbjct: 1 MKKLKQARESKNLTQSELASRTGISQQHISMIENGERIGSVETLRELAKALDTSVDQLL 59 >gi|229815060|ref|ZP_04445397.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] gi|229809290|gb|EEP45055.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] Length = 155 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 + R+ TQ+E+A AV+ +E G I + E ++ + D Sbjct: 8 LAQTRRERGLTQEELAARLFITRQAVSRWETGATEPGIDMIKLIARELDVPVTRLLD 64 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L R+++G++Q E L + +S +E G T P I + I + + + Sbjct: 8 LAQTRRERGLTQEELAARLFITRQAVSRWETGATEPGIDMIKLIARELDVPVTRLL 63 >gi|167769105|ref|ZP_02441158.1| hypothetical protein ANACOL_00428 [Anaerotruncus colihominis DSM 17241] gi|167668745|gb|EDS12875.1| hypothetical protein ANACOL_00428 [Anaerotruncus colihominis DSM 17241] Length = 76 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+D+R+ + Q +A + + +E G+ I + L + YE S D++ Sbjct: 4 ERIRDLREDRDLNQTAIANYLAIDQPGYSCYERGIRDIPIEILMKLADFYETSVDYLI 61 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R+D+ ++Q L + S YE+G I+ K+ + +D++ Sbjct: 1 MRFERIRDLREDRDLNQTAIANYLAIDQPGYSCYERGIRDIPIEILMKLADFYETSVDYL 60 Query: 173 YFGDEVIVP 181 +V P Sbjct: 61 IGRTDVYRP 69 >gi|119509672|ref|ZP_01628818.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Nodularia spumigena CCY9414] gi|119465691|gb|EAW46582.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Nodularia spumigena CCY9414] Length = 379 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ ++K R +Q+++A AN ++ E+G + S AL L + + Sbjct: 6 ELRNKLKQTRIRLGMSQQDLANLANVTRQTISGVESGQYAPSTTIALRLAKALGCQVEDL 65 Query: 91 YDGEVIDRRYEDVTNKK 107 + E Sbjct: 66 FWLEQDLPEIAATPAYN 82 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +LK R GMSQ + L + T+S E G+ P A ++ + ++ +++ Sbjct: 8 RNKLKQTRIRLGMSQQDLANLANVTRQTISGVESGQYAPSTTIALRLAKALGCQVEDLFW 67 Query: 175 GDEVIVPKSIKRA 187 ++ + + A Sbjct: 68 LEQDLPEIAATPA 80 >gi|116252575|ref|YP_768413.1| helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257223|emb|CAK08318.1| putative helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 264 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +TP R +G +++ R+ +Q ++A+ A + ++ E+G + S L+L Sbjct: 1 MTPTARS----LGDHLREWRQRRRMSQLDLALEAEISQRHLSFIESGRSTPSRDMLLHLA 56 Query: 81 NEYEISF 87 ++ Sbjct: 57 ERLDVPL 63 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R+ + MSQ++ + LS E GR+ P + + L Sbjct: 11 HLREWRQRRRMSQLDLALEAEISQRHLSFIESGRSTPSRDMLLHLAERLDVPL 63 >gi|292657070|ref|YP_003536967.1| transcriptional regulator [Haloferax volcanii DS2] gi|291370611|gb|ADE02838.1| transcriptional regulator [Haloferax volcanii DS2] Length = 70 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ R+A + +Q E+A +N E S+ A L ++ + ++D E Sbjct: 5 LRTRREAADLSQGELAEAVGVTRQTINAIERERYDPSLELAFKLAAYFDCRVEDLFDPE 63 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L++ R+ +SQ E + +G+ T++ E+ R P ++ A K+ ++ ++ Sbjct: 1 MKNGLRTRREAADLSQGELAEAVGVTRQTINAIERERYDPSLELAFKLAAYFDCRVEDLF 60 Query: 174 FGD 176 + Sbjct: 61 DPE 63 >gi|163867517|ref|YP_001608716.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161017163|emb|CAK00721.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 139 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 2/99 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTRI+ R TQ+++ + +E G + ++ + + Sbjct: 15 VGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQAIAEIMDVPVSYFF 74 Query: 92 DGEVIDRR--YEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + ++ ++ +D + ++ +R +S Sbjct: 75 DKGLTSQQVEGFAESDHNFMDFCSSSEGIQLMRAFTNIS 113 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 +D Y ++ R G++Q + G+ LG+ + YE+G + I + Sbjct: 6 KKPDPIDIYVGTR-IRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQAIAE 64 Query: 164 VTKKHLDWIY 173 + + + + Sbjct: 65 IMDVPVSYFF 74 >gi|167645630|ref|YP_001683293.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348060|gb|ABZ70795.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 64 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q ++A +N E G S+ A + + + + I+ Sbjct: 3 NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFKIARLFGLPIETIFQD 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ + L + T++ E G+ P + A KI ++ ++ I+ Sbjct: 1 MKNRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFKIARLFGLPIETIF 60 Query: 174 FGD 176 + Sbjct: 61 QDE 63 >gi|52140394|ref|YP_086438.1| DNA-binding protein; transcriptional regulator [Bacillus cereus E33L] gi|65317144|ref|ZP_00390103.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|51973863|gb|AAU15413.1| DNA-binding protein; transcriptional regulator [Bacillus cereus E33L] Length = 68 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 33/68 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++P + ++K +RK ++Q+E K + + T+ E P ++ + KI + Sbjct: 1 MEPMGVKNKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVK 60 Query: 169 LDWIYFGD 176 ++ I+ + Sbjct: 61 VEEIFTLE 68 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 8 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 67 Query: 94 E 94 E Sbjct: 68 E 68 >gi|326942848|gb|AEA18744.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 73 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R++++R + +Q ++ ++L E G + SI +L + + + + I+ Sbjct: 5 NRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFT 63 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +R +SQ + GK++G T+S E+G P I + KI Q+ ++ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEE 60 Query: 172 IYF 174 I+ Sbjct: 61 IFT 63 >gi|315924489|ref|ZP_07920710.1| prophage repressor [Pseudoramibacter alactolyticus ATCC 23263] gi|315622193|gb|EFV02153.1| prophage repressor [Pseudoramibacter alactolyticus ATCC 23263] Length = 223 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 1/116 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K + K N+T ++ N +++ + G + + L + ++++ +W+ Sbjct: 10 FGQRLKQLMKNFNETTYSLSEQFNLSPPSISRYTRGEMAPKMTTVYALADYFDVNPEWLM 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE-FGKLLGMPNSTLSNY 146 V E + + + IR D+ + L +P L+ + Sbjct: 70 GKTVSMYESEILGDTHAAGHAFDISVFDEIRYDRPIFSNHKTADHLSIPIDKLTEW 125 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 27/78 (34%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + G RLK + K+ + + + ++S Y +G P++ + Sbjct: 3 NSIHKSIFGQRLKQLMKNFNETTYSLSEQFNLSPPSISRYTRGEMAPKMTTVYALADYFD 62 Query: 167 KHLDWIYFGDEVIVPKSI 184 + +W+ + I Sbjct: 63 VNPEWLMGKTVSMYESEI 80 >gi|193071379|ref|ZP_03052295.1| putative repressor protein [Escherichia coli E110019] gi|192955295|gb|EDV85782.1| putative repressor protein [Escherichia coli E110019] Length = 219 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + +G R+K +RK TQ E+ + + +E + + L Sbjct: 3 EKMMESLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGT 62 Query: 86 SFDWIYDG 93 + ++ G Sbjct: 63 TESYLLYG 70 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 37/79 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RKDKG++Q+E GKL G+ T+ +E+ P K K+ Q ++ +G Sbjct: 13 LKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLLYGVS 72 Query: 178 VIVPKSIKRAKGNQSSKKS 196 ++ G + S Sbjct: 73 SPELSFVQSTSGTKIPYLS 91 >gi|186704310|dbj|BAG30963.1| unnamed protein product [Comamonas testosteroni] Length = 495 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 11/115 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R TQ +A S +N E ++ L + + Sbjct: 6 MGVRLRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQFS 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD-----------KGMSQIEFGKL 135 + E + + L +R+ M Q Sbjct: 66 EDEEARLLAQLRDAVAAMPQPEGAVPLPELREVAAKLPQLAQMLLAMHQRHLADA 120 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 36/79 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RL+S+R ++G++Q + L + S L+ EQ + + KI +V Sbjct: 1 MAKTFMGVRLRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 + +E + ++ A Sbjct: 61 IQQFSEDEEARLLAQLRDA 79 >gi|183981401|ref|YP_001849692.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174727|gb|ACC39837.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 473 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ +R+ + TQ +A S VN EN ++ L L +++ + Sbjct: 7 GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFDLPTHYF 64 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + GARL+ +R+D G++Q+ + LG+ S ++ E + + + + Sbjct: 1 MPKTFAGARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFDLP 60 Query: 169 LDWI 172 + Sbjct: 61 THYF 64 >gi|158423697|ref|YP_001524989.1| XRE family-like protein [Azorhizobium caulinodans ORS 571] gi|158330586|dbj|BAF88071.1| helix-turn-helix XRE-family like protein [Azorhizobium caulinodans ORS 571] Length = 231 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 34/94 (36%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 T +K E ++ + G+ I++ R A + + +A A ++ E G+ Sbjct: 28 TMVKGRAEVASTEDEAASEHDRAFGSSIREARLARGLSLQRVADAAGLSVGLLSQVERGI 87 Query: 69 CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 S S+R + ++ ++ + Sbjct: 88 SSPSVRVLRAICGALGVTVQSLFGEDGAPLSESR 121 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 31/90 (34%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + A G+ ++ R +G+S G+ LS E+G + P Sbjct: 31 KGRAEVASTEDEAASEHDRAFGSSIREARLARGLSLQRVADAAGLSVGLLSQVERGISSP 90 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 ++ R I + ++ D + +S Sbjct: 91 SVRVLRAICGALGVTVQSLFGEDGAPLSES 120 >gi|118617981|ref|YP_906313.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118570091|gb|ABL04842.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 483 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ +R+ + TQ +A S VN EN ++ L L +++ + Sbjct: 17 GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFDLPTHYF 74 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + GARL+ +R+D G++Q+ + LG+ S ++ E + + + + Sbjct: 9 SHVPKTFAGARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFD 68 Query: 167 KHLDWI 172 + Sbjct: 69 LPTHYF 74 >gi|329848824|ref|ZP_08263852.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843887|gb|EGF93456.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 75 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++D+R +Q E+ AVN E G S+ L + + + I+ Sbjct: 5 VRDLRMQRGWSQGELGERLGVSRQAVNAIEVGKHDPSLELTFKLAYLFNLPVEEIFH 61 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R +G SQ E G+ LG+ ++ E G+ P ++ K+ + ++ I+ Sbjct: 1 MRNLVRDLRMQRGWSQGELGERLGVSRQAVNAIEVGKHDPSLELTFKLAYLFNLPVEEIF 60 >gi|327467239|gb|EGF12743.1| transcriptional regulator [Streptococcus sanguinis SK330] Length = 71 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFW 60 Query: 175 GDEVIVPKS 183 ++ S Sbjct: 61 DPQLTDEDS 69 >gi|296102579|ref|YP_003612725.1| DNA-binding transcriptional repressor PuuR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057038|gb|ADF61776.1| DNA-binding transcriptional repressor PuuR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 185 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + V N++ L Sbjct: 69 EPEKPDEPQVVINQEDL 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 4 DGLAPGKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 Query: 170 DWIYFGDEVIVPKSI 184 + E + Sbjct: 64 SEFFSEPEKPDEPQV 78 >gi|312198964|ref|YP_004019025.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311230300|gb|ADP83155.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 221 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 +E + E R + + +++ +R+ T E+A + + ++ EN S S+ Sbjct: 20 REVDAAASQEGR-LERLIAAQVRRLRQGAGLTLAELATRSGISKPMLSKIENANTSCSLT 78 Query: 75 YALYLRNEYEISFDWIYDG 93 L + ++ ++ G Sbjct: 79 TLARLADALDVPVTALFRG 97 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A+++ +R+ G++ E G+ LS E T + ++ + ++ G Sbjct: 38 AQVRRLRQGAGLTLAELATRSGISKPMLSKIENANTSCSLTTLARLADALDVPVTALFRG 97 Query: 176 DEVIVPKSIKRA 187 + A Sbjct: 98 ADDQREAVFTPA 109 >gi|262282100|ref|ZP_06059869.1| DNA-binding protein [Streptococcus sp. 2_1_36FAA] gi|262262554|gb|EEY81251.1| DNA-binding protein [Streptococcus sp. 2_1_36FAA] Length = 70 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R ++ TQ ++A + L E G + S+ + + + D ++ Sbjct: 12 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCIAICKCLNKTLDQLF 68 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R + M+Q + +G+ T+ E G+ P + I + K LD Sbjct: 7 MAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCIAICKCLNKTLDQ 66 Query: 172 IYFG 175 +++ Sbjct: 67 LFWE 70 >gi|257463085|ref|ZP_05627486.1| MerR family transcriptional regulator [Fusobacterium sp. D12] gi|317060684|ref|ZP_07925169.1| transcriptional regulator [Fusobacterium sp. D12] gi|313686360|gb|EFS23195.1| transcriptional regulator [Fusobacterium sp. D12] Length = 182 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK R + + +E+A+ + S ++ E G S SI + ++ ++ Sbjct: 3 IGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSYLI 62 Query: 92 DGEV 95 + + Sbjct: 63 EDDE 66 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG ++K R +K +S E + + S LS EQG+ P I+ +KI + + Sbjct: 1 MSIGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DEV + + + + + K + Sbjct: 61 LIEDDEVQKNVDFVKKENIKYIESRDSNTKMA 92 >gi|218290563|ref|ZP_03494672.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239466|gb|EED06662.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 205 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 42/110 (38%), Gaps = 7/110 (6%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFEN--GMCSTSIRYALYLRNEYEISFDWIY 91 R+K +R+ +Q+ +A S++ +E+ + + + ++ D++ Sbjct: 5 DRLKTLREQRGISQERLAEILGIPRSSIAHYESPENDRLPRPERLKKIADFFGVTTDYLI 64 Query: 92 DGEVIDRRY--EDVTNKKRLDPYAIGARLKSIRK---DKGMSQIEFGKLL 136 + + + + + L+++R+ +K ++F L Sbjct: 65 GRTNDPHGHAIVNFADSEPIVTAEERRLLETVRELPPEKKQELMDFADFL 114 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ--GRTIPEIKPARKIKQVTKKHL 169 + RLK++R+ +G+SQ ++LG+P S++++YE +P + +KI Sbjct: 1 MSFSDRLKTLREQRGISQERLAEILGIPRSSIAHYESPENDRLPRPERLKKIADFFGVTT 60 Query: 170 DWIY 173 D++ Sbjct: 61 DYLI 64 >gi|325833460|ref|ZP_08165909.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485384|gb|EGC87853.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 71 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 34/65 (52%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K+VG R++ +R+ +N TQ+++A+ S + E G + +I + + ++ Sbjct: 6 RKNVGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLG 65 Query: 89 WIYDG 93 +++G Sbjct: 66 QLFEG 70 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R++ ++Q + + G+ S L+ E G I K+ L ++ G Sbjct: 11 QRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLGQLFEG 70 >gi|315037973|ref|YP_004031541.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|312276106|gb|ADQ58746.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1112] Length = 147 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 RI+ +R TQ E+A + +EN + L + +S ++ Sbjct: 2 NRIRQVRSEKGITQAELANAIGMSRQGLAYYENNQREPKLETWQKLADYLGVSVPYL 58 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 36/75 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ +R +KG++Q E +GM L+ YE + P+++ +K+ + ++ Sbjct: 1 MNRIRQVRSEKGITQAELANAIGMSRQGLAYYENNQREPKLETWQKLADYLGVSVPYLQG 60 Query: 175 GDEVIVPKSIKRAKG 189 + + + + + G Sbjct: 61 FSDSLANGASRNSNG 75 >gi|302519920|ref|ZP_07272262.1| DNA-binding protein [Streptomyces sp. SPB78] gi|318056959|ref|ZP_07975682.1| DNA-binding protein [Streptomyces sp. SA3_actG] gi|302428815|gb|EFL00631.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 291 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+A N T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDL 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHTFGD 94 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ + M+ E + L + S +S E GR + R + V + Sbjct: 16 QELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 >gi|225387513|ref|ZP_03757277.1| hypothetical protein CLOSTASPAR_01266 [Clostridium asparagiforme DSM 15981] gi|225046443|gb|EEG56689.1| hypothetical protein CLOSTASPAR_01266 [Clostridium asparagiforme DSM 15981] Length = 86 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK++R+ TQ+++ A+N E SI A + + + + ++ Sbjct: 3 NRIKELRERRGMTQEQLGEMVGTSRQAINAIETEKFEPSIWLAYDISRVFGCAIEEVF 60 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW-I 172 + R+K +R+ +GM+Q + G+++G ++ E + P I A I +V ++ Sbjct: 1 MKNRIKELRERRGMTQEQLGEMVGTSRQAINAIETEKFEPSIWLAYDISRVFGCAIEEVF 60 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 FG+ +S + N Sbjct: 61 LFGESTRKSRSESSRRENH 79 >gi|325291464|ref|YP_004277328.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059317|gb|ADY63008.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 121 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 6/113 (5%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW----- 89 ++ +R+ TQKEMA + ++ E+G S + + I +D Sbjct: 8 VRLLRERKGVTQKEMAAAIGVSPAYLSALEHGKRGKPSFDLLQRIAGYFNIIWDEAEELF 67 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 G + D + IRK E +L S Sbjct: 68 FLAGSSDPKVAIDTVGLPPQYTAFANRLARDIRKLPLSVIEELSAVLQKSRSC 120 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 ++ +R+ KG++Q E +G+ + LS E G+ P ++I Sbjct: 1 MTPFAEAVRLLRERKGVTQKEMAAAIGVSPAYLSALEHGKRGKPSFDLLQRIAGYFNIIW 60 Query: 168 -HLDWIYFGDEVIVPKS 183 + ++F PK Sbjct: 61 DEAEELFFLAGSSDPKV 77 >gi|308751810|gb|ADO45293.1| transcriptional regulator, XRE family [Hydrogenobacter thermophilus TK-6] Length = 311 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 28/67 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R++ +RK +Q+E + + +E G + + + +S++W+ Sbjct: 87 NIHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQIPDTALKLIASTFGVSYEWL 146 Query: 91 YDGEVID 97 G+ Sbjct: 147 KTGQGEM 153 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I RL+ +RK G+SQ EFG+ +G T+ +E G + I +W+ Sbjct: 88 IHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQIPDTALKLIASTFGVSYEWLK 147 Query: 174 FG-------DEVIVPKSIKRAKGNQSSKKSK 197 G +++ + + I+R + K K Sbjct: 148 TGQGEMWGREKLSLEEIIEREQRKLLESKIK 178 >gi|283834367|ref|ZP_06354108.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] gi|291069908|gb|EFE08017.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] Length = 185 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + V N++ L Sbjct: 69 EPEKPDEPQVVINQEDL 85 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 4 DGLAPGKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 Query: 170 DWIYFGDEVIVPKSI 184 + E + Sbjct: 64 SEFFAEPEKPDEPQV 78 >gi|308235773|ref|ZP_07666510.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114939|ref|YP_003986160.1| DNA-binding protein [Gardnerella vaginalis ATCC 14019] gi|310946433|gb|ADP39137.1| DNA-binding protein [Gardnerella vaginalis ATCC 14019] Length = 67 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ IRK TQ+E+A V ENG + SI A + + ++ + I+ Sbjct: 3 NRLEQIRKEKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIFIY 62 Query: 94 EVIDR 98 E + Sbjct: 63 EEDKK 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 34/65 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK+KG++Q E L + T+ + E GR P I A KI + ++ I+ Sbjct: 1 MKNRLEQIRKEKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEED 65 >gi|222081446|ref|YP_002540809.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726125|gb|ACM29214.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 222 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 32/89 (35%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 TP I + VG +++ IR +N +Q E+ + + +E+G S + N Sbjct: 69 TPSIHPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIAN 128 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 + YDG +D Sbjct: 129 CLNVPISRFYDGLPQAGSELVNGGLPEID 157 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 9/136 (6%) Query: 47 QKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 K + + S ++ E S + + L + S D + + Sbjct: 7 LKAIGPSSTVSNSPISQVERDFS--SGAHRMKLLDAGMTSMDDRAAEAFVKHSQFPRSAG 64 Query: 107 KRLDPYAIG-------ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 + +D +I +L+ IR +SQ E G + + + YE G+ Sbjct: 65 RDIDTPSIHPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLY 124 Query: 160 KIKQVTKKHLDWIYFG 175 +I + Y G Sbjct: 125 EIANCLNVPISRFYDG 140 >gi|197284378|ref|YP_002150250.1| phage reprossor [Proteus mirabilis HI4320] gi|194681865|emb|CAR41178.1| phage reprossor [Proteus mirabilis HI4320] Length = 233 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+K R K M+Q E +L+G+ ++ +E T P KI ++ + + Sbjct: 1 MKTMRERIKQARLAKNMTQAELAELVGVSPQSVQQWETS-TEPRKNRVIKIAEILEVDTN 59 Query: 171 WIYFG----DEVIVPKSIKRAKGNQSSKKSK 197 W+ FG DE SI+ + + S K+ Sbjct: 60 WLLFGITDIDERNKVSSIQINQDIEVSDKNT 90 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + RIK R A N TQ E+A +V +E + + E+ + Sbjct: 1 MKTMRERIKQARLAKNMTQAELAELVGVSPQSVQQWET-STEPRKNRVIKIAEILEVDTN 59 Query: 89 WIYDG 93 W+ G Sbjct: 60 WLLFG 64 >gi|196048249|ref|ZP_03115426.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196020986|gb|EDX59716.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 108 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 28/82 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ ++RK TQ +++ N + +E G + + + IS D ++ Sbjct: 4 LSKRLAELRKKRGYTQADISHRLNIARTTYANWEYGKADPDADSIMRIAELHNISIDELF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + D A Sbjct: 64 GRNNPLESKLESIKVALADIPA 85 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK +G +Q + L + +T +N+E G+ P+ +I ++ +D Sbjct: 1 MSHLSKRLAELRKKRGYTQADISHRLNIARTTYANWEYGKADPDADSIMRIAELHNISID 60 Query: 171 WIYFGDEVIVPK 182 ++ + + K Sbjct: 61 ELFGRNNPLESK 72 >gi|320178347|gb|EFW53318.1| helix-turn-helix domain protein [Shigella boydii ATCC 9905] Length = 149 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++ R+A T E+A + E + +E+G +I + L N Sbjct: 61 LQNKNSAINNRLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANILG 120 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 W+ GEV ++ D Sbjct: 121 CDPMWLLTGEVTPPEQPKSEEQQHHD 146 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI RL++ R+ G++ E +LL + + +E G P I + + W+ Sbjct: 67 AINNRLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANILGCDPMWL 126 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 G EV P+ K + Sbjct: 127 LTG-EVTPPEQPKSEEQQH 144 >gi|257063582|ref|YP_003143254.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791235|gb|ACV21905.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 76 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 34/69 (49%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + + +G RI +R+ +Q+ +A+ +N E+G + +I + + + Sbjct: 7 EHIESKRKLGVRIAKLREEKGMSQRRLALVLELDRVTLNRIESGTANPTISTLMRIADGL 66 Query: 84 EISFDWIYD 92 +++F+ ++ Sbjct: 67 DVAFEELFH 75 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +R++KGMSQ +L + TL+ E G P I +I + ++ Sbjct: 19 IAKLREEKGMSQRRLALVLELDRVTLNRIESGTANPTISTLMRIADGLDVAFEELF 74 >gi|237735081|ref|ZP_04565562.1| predicted protein [Mollicutes bacterium D7] gi|229381857|gb|EEO31948.1| predicted protein [Coprobacillus sp. D7] Length = 367 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 29/73 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ +Q+ + N V+ +E+ + ++ + + YEIS + Sbjct: 3 IGKKLLSLRQEKGISQEALGRELNVSRQTVSKWESDLSLPDMKMMITISQFYEISITQLL 62 Query: 92 DGEVIDRRYEDVT 104 D + Sbjct: 63 DLDDETEADSINK 75 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 41/81 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +L S+R++KG+SQ G+ L + T+S +E ++P++K I Q + + Sbjct: 1 MSIGKKLLSLRQEKGISQEALGRELNVSRQTVSKWESDLSLPDMKMMITISQFYEISITQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + D+ SI + S Sbjct: 61 LLDLDDETEADSINKIYEQTS 81 >gi|229115891|ref|ZP_04245288.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-3] gi|228667553|gb|EEL22998.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-3] Length = 186 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + S Sbjct: 66 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNKKA-------S 118 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 T ++ EI K +V L+ ++ GD V +P ++K N+S + + Sbjct: 119 TTESHYSHEDKEEIAVVMK-GEVY-VELEGKEYFLEEGDVVRIPPNVKHRFLNKSDESN 175 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + Y +G + S RK M+ EF + G+ S +S E+G P + I + Sbjct: 1 MIHYRLGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 L ++ D + I + K + + D Sbjct: 61 LFTLFIND-IDTDSLISKKKDRKKVYRENND 90 >gi|261339303|ref|ZP_05967161.1| hypothetical protein ENTCAN_05544 [Enterobacter cancerogenus ATCC 35316] gi|288319163|gb|EFC58101.1| transcriptional regulator, Cro/CI family [Enterobacter cancerogenus ATCC 35316] Length = 185 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRLDPY 112 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDLIEM 88 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 4 DGLAPGKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 Query: 170 DWIYFGDEVIVPKSI 184 + E + Sbjct: 64 SEFFSEPEKPDEPQV 78 >gi|218897358|ref|YP_002445769.1| DNA-binding protein [Bacillus cereus G9842] gi|228901004|ref|ZP_04065216.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222] gi|218542293|gb|ACK94687.1| DNA-binding protein [Bacillus cereus G9842] gi|228858635|gb|EEN03083.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222] Length = 186 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 13/124 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + S Sbjct: 66 INEIDTDSLISKKKDRKKVYRENNNHIVYDVLTPDFMKARIEMLMMDLNKQA---NTTES 122 Query: 142 TLSN 145 S+ Sbjct: 123 HYSH 126 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ +E+ Sbjct: 13 YRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFI-NEIDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + + Sbjct: 72 DSLISKKKDRKKVYRENNN 90 >gi|167757519|ref|ZP_02429646.1| hypothetical protein CLORAM_03069 [Clostridium ramosum DSM 1402] gi|167702516|gb|EDS17095.1| hypothetical protein CLORAM_03069 [Clostridium ramosum DSM 1402] Length = 367 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 29/73 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ +Q+ + N V+ +E+ + ++ + + YEIS + Sbjct: 3 IGKKLLSLRQEKGISQEALGRELNVSRQTVSKWESDLSLPDMKMMITISQFYEISITQLL 62 Query: 92 DGEVIDRRYEDVT 104 D + Sbjct: 63 DLDDETEADSINK 75 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 41/81 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG +L S+R++KG+SQ G+ L + T+S +E ++P++K I Q + + Sbjct: 1 MSIGKKLLSLRQEKGISQEALGRELNVSRQTVSKWESDLSLPDMKMMITISQFYEISITQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + D+ SI + S Sbjct: 61 LLDLDDETEADSINKIYEQTS 81 >gi|52142395|ref|YP_084434.1| ans operon repressor protein [Bacillus cereus E33L] gi|51975864|gb|AAU17414.1| ans operon repressor protein [Bacillus cereus E33L] Length = 125 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|37519836|ref|NP_923213.1| transcriptional regulator [Gloeobacter violaceus PCC 7421] gi|35210827|dbj|BAC88208.1| gll0267 [Gloeobacter violaceus PCC 7421] Length = 366 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN--QLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G RIK R+ + + +A A+ +E G + L E+S + Sbjct: 2 LGERIKLARRKAGYSLRNLADRMGGRVSAQAIGKYERGEMVPGSDNLIALSRALEVSVPY 61 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + D + I+ D + + Sbjct: 62 LLDSQGIELTGVDFRAQAGI 81 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R+K R+ G S +G + + YE+G +P + + + + Sbjct: 1 MLGERIKLARRKAGYSLRNLADRMGGRVSAQAIGKYERGEMVPGSDNLIALSRALEVSVP 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|65321317|ref|ZP_00394276.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] Length = 106 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 21/69 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K R + TQ E S ++ E + + + + IS D + Sbjct: 4 FGENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVDTLM 63 Query: 92 DGEVIDRRY 100 + Sbjct: 64 GRKFTTSEK 72 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK R + ++Q EFG + + S +SN E P++ +I +D Sbjct: 1 MNTFGENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + K ++ Sbjct: 61 TLMGRKFTTSEKHLED 76 >gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 211 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 I+ IRK TQ ++A + V +ENG + I+ L + Sbjct: 5 ENIRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSNPPIKTIQRLAQTLGVPV 58 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ ++ IRK G++Q + + +G+ +T++ +E G + P IK +++ Q + Sbjct: 1 MALPENIRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSNPPIKTIQRLAQTLGVPV-T 59 Query: 172 IYFGD 176 I GD Sbjct: 60 IVVGD 64 >gi|254251221|ref|ZP_04944539.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158] gi|124893830|gb|EAY67710.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158] Length = 189 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E +V R++ +R + +Q+E+A A A++L E G S S+ L Sbjct: 2 SETESMSTEVAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLKKLLEC 61 Query: 83 YEISFDWIYDGEVIDRR 99 +S + E+++ R Sbjct: 62 IPMSLAEFFTFELVESR 78 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N +S EQGR P + +K+ + L + Sbjct: 13 ERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 72 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 73 ELVESRTVVSRRDE 86 >gi|126011121|ref|YP_001039946.1| hypothetical protein phi3396_59 [Streptococcus phage phi3396] gi|124389390|gb|ABN10832.1| hypothetical protein phi3396_59 [Streptococcus phage phi3396] Length = 86 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 MFLN F + + + ++ VG +I+ RK Q ++A + + Sbjct: 1 MFLNYFCCNIKST--------GGQKMELYEFVGEQIRHQRKLAKLNQSQLAELLDTNQQT 52 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 + + ENG +++ + LR + +S D + Sbjct: 53 IGMMENGKRRATLQDLVKLRKIFNVSVDDFLPKD 86 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + +K +G +++ RK ++Q + +LL T+ E G+ ++ Sbjct: 8 CNIKSTGGQKMELYEFVGEQIRHQRKLAKLNQSQLAELLDTNQQTIGMMENGKRRATLQD 67 Query: 158 ARKIKQVTKKHLDWIYFGD 176 K++++ +D D Sbjct: 68 LVKLRKIFNVSVDDFLPKD 86 >gi|54293108|ref|YP_125523.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens] gi|53752940|emb|CAH14376.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens] Length = 234 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 4/115 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G RI + RKA T K + A ++ + +E G+ + L ++S Sbjct: 18 KEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLAEALDVSPA 77 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS--QIEFGKLLGMPNS 141 ++ + + + V L P + R Q G + S Sbjct: 78 YLMCL-SDEAQVKVVKKTSHLIPLLDHHQACQARLHVNTIRVQGTCGDAALISVS 131 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ RK KG++ G+L G + + L+N+EQG P + + + + ++ Sbjct: 22 KRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLAEALDVSPAYLMC 81 Query: 175 GDEVIVPKSIKRA 187 + K +K+ Sbjct: 82 LSDEAQVKVVKKT 94 >gi|330819769|ref|YP_004348631.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] gi|327371764|gb|AEA63119.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] Length = 189 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G RI+ R++ + +A + + ++ E G S + L + Sbjct: 5 VDDIDHRIGARIRAERESRGWSLTNLAENSGVSRAMIHKIERGESSPTATSLAKLAGAFN 64 Query: 85 ISFDWIY 91 +S + Sbjct: 65 LSMSALL 71 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + IGAR+++ R+ +G S + G+ + + E+G + P K+ + Sbjct: 10 HRIGARIRAERESRGWSLTNLAENSGVSRAMIHKIERGESSPTATSLAKLAGAFNLSMSA 69 Query: 172 IY 173 + Sbjct: 70 LL 71 >gi|283479609|emb|CAY75525.1| HTH-type transcriptional regulator ansR; Ans operon repressor protein [Erwinia pyrifoliae DSM 12163] Length = 140 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + G R+K++R +TQKE+A S N +E+GM + L + Sbjct: 14 QTEEQRRAFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELF 73 Query: 84 EISFDWIYDG 93 + D+ G Sbjct: 74 TTTIDYXLLG 83 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G RLK +R + +Q E L+G+ S + YE G IP + ++ ++ +D+ Sbjct: 21 AFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELFTTTIDYX 80 Query: 173 YFG 175 G Sbjct: 81 LLG 83 >gi|255974995|ref|ZP_05425581.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2] gi|256963766|ref|ZP_05567937.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis HIP11704] gi|257421770|ref|ZP_05598760.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|307271713|ref|ZP_07552984.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307285503|ref|ZP_07565642.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|255967867|gb|EET98489.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2] gi|256954262|gb|EEU70894.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis HIP11704] gi|257163594|gb|EEU93554.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|306502727|gb|EFM71992.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306511591|gb|EFM80590.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|315155529|gb|EFT99545.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 180 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 36/81 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + + ++++ + L Sbjct: 62 FSQQPLEQKIVYNEEESTLYY 82 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|255519174|ref|ZP_05386850.1| putative prophage repressor [Clostridium difficile QCD-97b34] Length = 109 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++R+ + +QKE N ++ ++ E G+ + + R + ++Y ++ W+ G Sbjct: 3 NRIKELRQIKHLSQKEFGETLNLSQNHISSIEKGVRTVTDRTINDICDKYNVNKKWLLTG 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLK 119 + + LD + ++ Sbjct: 63 QGEIFKDVLEGF--NLDNSEVEEFIR 86 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R+ K +SQ EFG+ L + + +S+ E+G + I + W+ Sbjct: 1 MNNRIKELRQIKHLSQKEFGETLNLSQNHISSIEKGVRTVTDRTINDICDKYNVNKKWLL 60 Query: 174 FGDEVIVPKSIKRAKGNQSSKKS 196 G I ++ + S + Sbjct: 61 TGQGEIFKDVLEGFNLDNSEVEE 83 >gi|182418674|ref|ZP_02949950.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237669723|ref|ZP_04529700.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377451|gb|EDT75006.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237654797|gb|EEP52360.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 171 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 33/94 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG IK IRK N +QK+MA N S + +EN + + + + + Sbjct: 8 KVGNNIKKIRKEKNISQKDMAKKLNMPSSTYSNYENNNREPNALTLKKIADVLSVDVHDL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + + + + + L + + Sbjct: 68 LNVQSSNNNVGEKYLSDDSTTINVIENLIKLCEF 101 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K IRK+K +SQ + K L MP+ST SNYE P +KI V + + Sbjct: 11 NNIKKIRKEKNISQKDMAKKLNMPSSTYSNYENNNREPNALTLKKIADVLSVDVHDLL 68 >gi|160894257|ref|ZP_02075034.1| hypothetical protein CLOL250_01810 [Clostridium sp. L2-50] gi|156863958|gb|EDO57389.1| hypothetical protein CLOL250_01810 [Clostridium sp. L2-50] gi|295099077|emb|CBK88166.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 209 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R+K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + ++ A+G L+ + Sbjct: 64 VSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 99 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 12 SRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 70 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 71 GETDEYETDITDKRE 85 >gi|118480114|ref|YP_897265.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228917662|ref|ZP_04081203.1| hypothetical protein bthur0012_48660 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229094144|ref|ZP_04225224.1| hypothetical protein bcere0021_48550 [Bacillus cereus Rock3-42] gi|229187275|ref|ZP_04314420.1| hypothetical protein bcere0004_48110 [Bacillus cereus BGSC 6E1] gi|118419339|gb|ABK87758.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228596285|gb|EEK53960.1| hypothetical protein bcere0004_48110 [Bacillus cereus BGSC 6E1] gi|228689247|gb|EEL43068.1| hypothetical protein bcere0021_48550 [Bacillus cereus Rock3-42] gi|228841899|gb|EEM87005.1| hypothetical protein bthur0012_48660 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 79 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFN 61 Query: 85 ISFDWIYD 92 + + I+ Sbjct: 62 VPVEEIFT 69 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI Q+ Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIF 60 Query: 166 KKHLDWIYF 174 ++ I+ Sbjct: 61 NVPVEEIFT 69 >gi|116669412|ref|YP_830345.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116609521|gb|ABK02245.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 191 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 42/109 (38%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + E +G+RI+ R++ T +++A + ++ E + S S+ + L Sbjct: 3 ALPVEPSNIPVAIGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTL 62 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 IS ++ +D + L I RL + R ++ + Sbjct: 63 CQVLSISIGDLFAAPETHLTKKDEGPRISLGGEGIIERLLTARSERRVQ 111 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG+R+++ R+ + ++ + G+ LS E+ T P + + QV + + Sbjct: 14 AIGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLSISIGDL 73 Query: 173 YFGDEVIVPKSIK 185 + E + K + Sbjct: 74 FAAPETHLTKKDE 86 >gi|325264148|ref|ZP_08130880.1| putative transcriptional regulator, XRE family with cupin sensor domain protein [Clostridium sp. D5] gi|324030632|gb|EGB91915.1| putative transcriptional regulator, XRE family with cupin sensor domain protein [Clostridium sp. D5] Length = 189 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + DVG +I+ +RK + T K++ ++ E CS ++ + EI Sbjct: 11 EEQNDDVGGKIRALRKEKDITLKQLGKETGLSIGYLSNLERDACSPTLDNLQKICGVLEI 70 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 S + DG RR +K + R +SI+ G+ Sbjct: 71 SLIELLDGMNQGRRVIRKEERKVVFEKPGKVRYESIKFGSGL 112 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++++RK+K ++ + GK G+ LSN E+ P + +KI V + L + G Sbjct: 21 IRALRKEKDITLKQLGKETGLSIGYLSNLERDACSPTLDNLQKICGVLEISLIELLDG 78 >gi|317484077|ref|ZP_07943008.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924665|gb|EFV45820.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 97 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+ D GT I+ R +Q +A + S +++ E+G SI + + Sbjct: 18 TRKKSPDAGTAIRHFRHEAGLSQDGLADRMDVSPSYISMLESGKRYPSIEMLIRIALALN 77 Query: 85 IS----FDWI 90 I D+I Sbjct: 78 IKPGLMLDYI 87 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH----LDWI 172 ++ R + G+SQ + + S +S E G+ P I+ +I LD+I Sbjct: 29 IRHFRHEAGLSQDGLADRMDVSPSYISMLESGKRYPSIEMLIRIALALNIKPGLMLDYI 87 >gi|300312342|ref|YP_003776434.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075127|gb|ADJ64526.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 124 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R Q++ A + ++ E G R+ L +E++++ +W+ Sbjct: 20 IGERLKSVRLLAGMNQRDFAARLKTSGAYISCVELGHSMPGGRFLRSLHHEFDVNVNWLL 79 Query: 92 DGEVIDRRYEDVTNKKRL 109 G+ + + L Sbjct: 80 TGQEPSLPPRYGLHVRSL 97 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 41/81 (50%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + T+ R+ AIG RLKS+R GM+Q +F L + +S E G ++P + R Sbjct: 7 KSDTSGMRISKDAIGERLKSVRLLAGMNQRDFAARLKTSGAYISCVELGHSMPGGRFLRS 66 Query: 161 IKQVTKKHLDWIYFGDEVIVP 181 + +++W+ G E +P Sbjct: 67 LHHEFDVNVNWLLTGQEPSLP 87 >gi|266626094|ref|ZP_06119029.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288861999|gb|EFC94297.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 102 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI RK +Q+++A AV +EN + L L +EI + + Sbjct: 4 LGKRIAYYRKLQGLSQEKVAEHIGISRQAVTKWENDNSRPNTDNLLQLSALFEIPLNELV 63 Query: 92 DGEVIDRRYEDVTNKKR 108 D E+ + Sbjct: 64 SSYSEDHSPEEKATRID 80 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 R+ RK +G+SQ + + +G+ ++ +E + P ++ + + L+ + Sbjct: 6 KRIAYYRKLQGLSQEKVAEHIGISRQAVTKWENDNSRPNTDNLLQLSALFEIPLNELVSS 65 Query: 174 FGDEVIVPKSIKRAKGN 190 + ++ + R N Sbjct: 66 YSEDHSPEEKATRIDEN 82 >gi|226526961|ref|YP_002790980.1| transcriptional regulator [Lactobacillus brevis] gi|226442553|dbj|BAH56423.1| transcriptional regulator [Lactobacillus brevis] Length = 65 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I++ RK N +Q E+A V+L EN + S++ L + N + + D +++ Sbjct: 3 NKIREYRKKKNLSQAELAEKVGLARQTVSLLENKSYNPSLKVCLNIANVLDTTLDSLFNP 62 Query: 94 EVI 96 + Sbjct: 63 KSF 65 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ RK K +SQ E + +G+ T+S E P +K I V LD ++ Sbjct: 3 NKIREYRKKKNLSQAELAEKVGLARQTVSLLENKSYNPSLKVCLNIANVLDTTLDSLF 60 >gi|210610467|ref|ZP_03288424.1| hypothetical protein CLONEX_00614 [Clostridium nexile DSM 1787] gi|210152460|gb|EEA83466.1| hypothetical protein CLONEX_00614 [Clostridium nexile DSM 1787] Length = 110 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 K +G RI++ R T +++ N + V+ E G I + + Sbjct: 13 TDDIRKQIGWRIQEKRIEKGITAVDLSTYLNITANQVSRIERGCAGIDIYKLIVICKILG 72 Query: 85 ISFDWIYDGEVIDRR 99 +S D+I GE+ + Sbjct: 73 VSADYILFGEMKEEN 87 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R +KG++ ++ L + + +S E+G +I I ++ D+I FG Sbjct: 22 WRIQEKRIEKGITAVDLSTYLNITANQVSRIERGCAGIDIYKLIVICKILGVSADYILFG 81 Query: 176 DEVIVPKSIKRAK 188 + +I + + Sbjct: 82 EMKEENITISKEQ 94 >gi|210610577|ref|ZP_03288503.1| hypothetical protein CLONEX_00693 [Clostridium nexile DSM 1787] gi|210152436|gb|EEA83442.1| hypothetical protein CLONEX_00693 [Clostridium nexile DSM 1787] Length = 147 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 28/67 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + Q +G RI++ RK +Q+ +A + + ++ E G + S+ + Sbjct: 20 VSQELIMLGNRIREYRKERGFSQEILAEKSGVSTNTISRIEGGQMAMSVGILQRIVKALG 79 Query: 85 ISFDWIY 91 + + + Sbjct: 80 VDANVLL 86 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ RK++G SQ + G+ +T+S E G+ + ++I + + Sbjct: 25 IMLGNRIREYRKERGFSQEILAEKSGVSTNTISRIEGGQMAMSVGILQRIVKALGVDANV 84 Query: 172 IY 173 + Sbjct: 85 LL 86 >gi|157690974|ref|YP_001485436.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157679732|gb|ABV60876.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 71 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RIK +R + TQK++A V ENG S S++ A + +E+ + Sbjct: 2 EIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYDV 61 Query: 91 YDGEVIDRRY 100 + + + Sbjct: 62 FQEVDKEEQQ 71 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+K +R ++ +Q + + LG+ T++ E G+ +K A +I + + L Sbjct: 1 MEIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYD 60 Query: 172 IY 173 ++ Sbjct: 61 VF 62 >gi|47567072|ref|ZP_00237789.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|206970262|ref|ZP_03231215.1| DNA-binding protein [Bacillus cereus AH1134] gi|206978226|ref|ZP_03239106.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217962506|ref|YP_002341078.1| DNA-binding protein [Bacillus cereus AH187] gi|218234825|ref|YP_002369834.1| DNA-binding protein [Bacillus cereus B4264] gi|222098481|ref|YP_002532539.1| DNA-binding protein [Bacillus cereus Q1] gi|296505465|ref|YP_003667165.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|47556390|gb|EAL14724.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|206734839|gb|EDZ52008.1| DNA-binding protein [Bacillus cereus AH1134] gi|206743585|gb|EDZ55012.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217065545|gb|ACJ79795.1| DNA-binding protein [Bacillus cereus AH187] gi|218162782|gb|ACK62774.1| DNA-binding protein [Bacillus cereus B4264] gi|221242540|gb|ACM15250.1| DNA-binding protein [Bacillus cereus Q1] gi|296326517|gb|ADH09445.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 73 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R++++R + +Q ++ ++L E G + SI +L + + + + I+ Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFT 63 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +R +SQ + GK +G T+S E+G P I + KI Q+ ++ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEE 60 Query: 172 IYF---GDEVIVP 181 I+ G+E Sbjct: 61 IFTLVEGEEDDEE 73 >gi|281491791|ref|YP_003353771.1| transcriptional repressor [Lactococcus lactis subsp. lactis KF147] gi|281375505|gb|ADA65015.1| Transcriptional repressor [Lactococcus lactis subsp. lactis KF147] Length = 252 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 35/88 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +K +RK TQ ++A ++A L+E + ++ L + Y++ + Sbjct: 2 NFGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLELLEKLADIYDLPIQEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + N + L + + Sbjct: 62 IKETDNNAEKQLIDNYRSLTGEQQESVI 89 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G LK +RK+ ++Q + + LGM + +EQ T P ++ K+ + + Sbjct: 1 MNFGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLELLEKLADIYDLPIQE 60 Query: 172 IYFGDEVIVPKSI 184 + + K + Sbjct: 61 LIKETDNNAEKQL 73 >gi|291301572|ref|YP_003512850.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570792|gb|ADD43757.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 207 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Q + + ++ IR+A + +A + + ++ E+G + +I L N Sbjct: 3 REQAGRALAANLRAIREAAGLSLSAVARESGIAKGTLSQLESGTGNPTIETVFSLSNTLG 62 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + + E D V ++ + L+ +R+ Sbjct: 63 VPVSSLLT-ERTDPDVVLVRSRDLEVLSSNAVDLRMLRRM 101 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ A L++IR+ G+S + G+ TLS E G P I+ + + + Sbjct: 9 ALAANLRAIREAAGLSLSAVARESGIAKGTLSQLESGTGNPTIETVFSLSNTLGVPVSSL 68 Query: 173 YFGDEVIVPKSI 184 E P + Sbjct: 69 LT--ERTDPDVV 78 >gi|222087768|ref|YP_002546305.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725216|gb|ACM28372.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 227 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 30/97 (30%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + + +G ++ RK T ++A ++ ENG S S+ Sbjct: 24 QDPHALRDAKENNLEMAIGHEVRAYRKKLGITGADLASATGISLGMLSKIENGNTSPSLT 83 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDP 111 L + + R V + L+ Sbjct: 84 TLQSLARALGVPVTAFFRRFEEKRNAVFVKAGEGLEM 120 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG +++ RK G++ + G+ LS E G T P + + + + + Sbjct: 39 MAIGHEVRAYRKKLGITGADLASATGISLGMLSKIENGNTSPSLTTLQSLARALGVPVTA 98 Query: 172 IY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + +E +K +G + ++ + N Sbjct: 99 FFRRFEEKRNAVFVKAGEGLEMERRGTRAGHQYN 132 >gi|170023869|ref|YP_001720374.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169750403|gb|ACA67921.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] Length = 133 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 28/68 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++ + +A N +Q ++ A N +E G + + + + + +++ D + Sbjct: 16 FAERLRLLLEARNLSQVRLSELLGVDPCAYNRWEKGATAPHLDTVIKIADVLQVTLDELV 75 Query: 92 DGEVIDRR 99 + + Sbjct: 76 GRKAVSEE 83 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D A RL+ + + + +SQ+ +LLG+ + +E+G T P + KI V + Sbjct: 11 MDMSAFAERLRLLLEARNLSQVRLSELLGVDPCAYNRWEKGATAPHLDTVIKIADVLQVT 70 Query: 169 LDWIYFGDEVIVPKSI 184 LD + V I Sbjct: 71 LDELVGRKAVSEEVKI 86 >gi|167646240|ref|YP_001683903.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348670|gb|ABZ71405.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 136 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ RK +Q ++A + +E G S L + +W + Sbjct: 13 VGQRIRLRRKLAGASQTQVADALGLTFQQLQKYERGTNRISASKLQALALHLRVPINWFF 72 Query: 92 DGEVIDRRYEDVTNKKR 108 +G + N+++ Sbjct: 73 EGLEEPTAEDAAINRRQ 89 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ RK G SQ + LG+ L YE+G + + + ++W Sbjct: 11 LHVGQRIRLRRKLAGASQTQVADALGLTFQQLQKYERGTNRISASKLQALALHLRVPINW 70 Query: 172 IYFGDEVIVPKS 183 + G E + Sbjct: 71 FFEGLEEPTAED 82 >gi|16799870|ref|NP_470138.1| hypothetical protein lin0796 [Listeria innocua Clip11262] gi|16413247|emb|CAC96028.1| lin0796 [Listeria innocua Clip11262] gi|313619917|gb|EFR91474.1| DNA-binding protein [Listeria innocua FSL S4-378] Length = 180 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 DIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|3219886|sp|Q57720|Y272_METJA RecName: Full=Uncharacterized HTH-type transcriptional regulator MJ0272 Length = 66 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R +N TQ+++A + E G S++ A + + + + I+ Sbjct: 3 NKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIFIY 62 Query: 94 EVID 97 E + Sbjct: 63 EDDE 66 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R ++Q + K LG+ T+ E+G+ P +K A KI + ++ I+ Sbjct: 1 MKNKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60 Query: 174 FGDEV 178 ++ Sbjct: 61 IYEDD 65 >gi|111656768|ref|ZP_01407642.1| hypothetical protein SpneT_02001945 [Streptococcus pneumoniae TIGR4] Length = 73 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D+R+ ++ QK++A + SA E G + + + L + Y++S D++ Sbjct: 3 RRLRDLREDHDLPQKQIATILSFTNSAYAKIERGEHALTADVLVKLSDFYDVSTDYLLGL 62 Query: 94 EVIDRR 99 + Sbjct: 63 TDFPDK 68 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 27/73 (36%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+D + Q + +L NS + E+G K+ D++ Sbjct: 1 MYRRLRDLREDHDLPQKQIATILSFTNSAYAKIERGEHALTADVLVKLSDFYDVSTDYLL 60 Query: 174 FGDEVIVPKSIKR 186 + ++ Sbjct: 61 GLTDFPDKIRFRK 73 >gi|315150985|gb|EFT95001.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0012] Length = 128 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+ TQKE+A + S N E+G + + Y +S D++ + Sbjct: 8 ERLKQLRENKELTQKELADLLHMDRSVYNKIESGARPIRDNELIQFADFYNVSTDYLTNR 67 Query: 94 EVIDRRYEDVTN 105 E+ TN Sbjct: 68 TNNPIPPEEKTN 79 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + RLK +R++K ++Q E LL M S + E G + Sbjct: 1 MTIIKTNERLKQLRENKELTQKELADLLHMDRSVYNKIESGARPIRDNELIQFADFYNVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D++ +P K G Sbjct: 61 TDYLTNRTNNPIPPEEKTNVGQN 83 >gi|294509118|ref|YP_003566046.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] gi|294352042|gb|ADE72366.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] Length = 149 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 25/87 (28%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +I R+ N TQ ++A ++ +E+ + L ++ D++ Sbjct: 4 GEKIAKARREMNLTQDQLAEMLEVTRQTISKWESNLAYPESVKLGKLAEVLNVTCDYLLR 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLK 119 + K Sbjct: 64 ENQATSTSTSIEVTMNNSGNYTLDWSK 90 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 33/81 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++ R++ ++Q + ++L + T+S +E PE K+ +V D+ Sbjct: 1 MNRGEKIAKARREMNLTQDQLAEMLEVTRQTISKWESNLAYPESVKLGKLAEVLNVTCDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + ++ + N S Sbjct: 61 LLRENQATSTSTSIEVTMNNS 81 >gi|240851106|ref|YP_002972508.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268229|gb|ACS51817.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 157 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 6/130 (4%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 T+ ++L + P ++ D+ G RI+ R + +QK + + +E Sbjct: 22 TNARALATGGGLEVPTKNPHFIDILIGKRIRHRRISMGLSQKALGSHLGVSFQQIQKYEK 81 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR----LKSIR 122 G+ S + L + + E+ + Y I D + LK+ R Sbjct: 82 GLNRVSAKCLLEIAQKLEVPISFFYADIAIKEDLSTKETLLHHDQCTYSEKEHTLLKNFR 141 Query: 123 KDKGMSQIEF 132 + K Q Sbjct: 142 ELKSKKQKAI 151 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 T IG R++ R G+SQ G LG+ + YE+G K +I Sbjct: 36 PTKNPHFIDILIGKRIRHRRISMGLSQKALGSHLGVSFQQIQKYEKGLNRVSAKCLLEIA 95 Query: 163 QVTKKHLDWIY 173 Q + + + Y Sbjct: 96 QKLEVPISFFY 106 >gi|229492212|ref|ZP_04386020.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] gi|229320838|gb|EEN86651.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] Length = 292 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 47/162 (29%), Gaps = 29/162 (17%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R+ + + +E+A + + ++ E G S+ + + FD + Sbjct: 10 IGASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGVRFDALL 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK---------------------DKGMSQI 130 ++ + DP A R+ G + Sbjct: 70 PAAIVRPPEQPRWGGDDADPDAHFRP-HEWRRFGPSSFDPVLAAALAEMVKTGYHGAAMR 128 Query: 131 EFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 E K M L ++ + + ++ + + Sbjct: 129 EIAKRAQMSVPGLYHHYSSKQQM-------LAEILDLTMAEL 163 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A ++ R+ G+S E + L + +TLS E G+T + I + D + Sbjct: 12 ASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGVRFDALL 69 >gi|227555817|ref|ZP_03985864.1| transcriptional regulator [Enterococcus faecalis HH22] gi|227174984|gb|EEI55956.1| transcriptional regulator [Enterococcus faecalis HH22] gi|315573616|gb|EFU85807.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315582036|gb|EFU94227.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] Length = 75 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 31/69 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI+++R+ + +Q+++A + ++ + +E G + + L Y S D++ + Sbjct: 7 RIRNLREDADLSQEKLARLLHINQATYSRYETGDLEIPVSSLIKLAEFYSTSVDYLVNLT 66 Query: 95 VIDRRYEDV 103 Y Sbjct: 67 DSMEPYPKT 75 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I R++++R+D +SQ + +LL + +T S YE G + K+ + +D Sbjct: 1 MIFIYYRIRNLREDADLSQEKLARLLHINQATYSRYETGDLEIPVSSLIKLAEFYSTSVD 60 Query: 171 WIYFGDEVIVP 181 ++ + + P Sbjct: 61 YLVNLTDSMEP 71 >gi|213968238|ref|ZP_03396382.1| phage repressor [Pseudomonas syringae pv. tomato T1] gi|301381283|ref|ZP_07229701.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13] gi|302062899|ref|ZP_07254440.1| putative phage repressor [Pseudomonas syringae pv. tomato K40] gi|213926876|gb|EEB60427.1| phage repressor [Pseudomonas syringae pv. tomato T1] Length = 228 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RK +Q+ +A +S + +E G S++ + + +SF + Sbjct: 4 LGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKISDTLGVSFVDL 63 Query: 91 Y 91 Sbjct: 64 V 64 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKH- 168 +G ++ +RK+KG+SQ G S + NYE+G P ++ RKI Sbjct: 1 MNTLGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKISDTLGVSF 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 +D + F D+ P +K K+ Sbjct: 61 VDLVAFTDDNAQPLVVKLKDSAPRLTGKAKE 91 >gi|210630657|ref|ZP_03296539.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM 13279] gi|210160390|gb|EEA91361.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM 13279] Length = 152 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+RI+++R Q+E+A A ESAV +E G+ + ++ + E+ + D Sbjct: 15 GSRIRELRTRRGLLQRELAEMAGVTESAVRNYELGLRTPRPQHLKAIARALEVDPASLVD 74 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G+R++ +R +G+ Q E ++ G+ S + NYE G P + + I + + Sbjct: 12 MADGSRIRELRTRRGLLQRELAEMAGVTESAVRNYELGLRTPRPQHLKAIARALEVDPAS 71 Query: 172 IY 173 + Sbjct: 72 LV 73 >gi|197302202|ref|ZP_03167261.1| hypothetical protein RUMLAC_00929 [Ruminococcus lactaris ATCC 29176] gi|197298633|gb|EDY33174.1| hypothetical protein RUMLAC_00929 [Ruminococcus lactaris ATCC 29176] gi|291526721|emb|CBK92307.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 209 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R+K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + ++ A+G L+ + Sbjct: 64 VSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 99 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 12 SRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 70 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 71 GETDEYETDITDKRE 85 >gi|167768466|ref|ZP_02440519.1| hypothetical protein CLOSS21_03025 [Clostridium sp. SS2/1] gi|291086900|ref|ZP_06344824.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|167709990|gb|EDS20569.1| hypothetical protein CLOSS21_03025 [Clostridium sp. SS2/1] gi|291077343|gb|EFE14707.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 232 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY- 78 ++ + ++ K +G+R+K R N TQ +A S + +ENG + + L Sbjct: 21 AVSMKDKELRKLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEG 80 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 L +S +W+ GE + + ++ A+G L+ + Sbjct: 81 LSEALHVSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 122 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 35 SRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 93 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 94 GETDEYETDITDKRE 108 >gi|77408023|ref|ZP_00784772.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77413855|ref|ZP_00790033.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77160095|gb|EAO71228.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173385|gb|EAO76505.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 104 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K++R N +QK++A N + A +E+G S S+ + N + +S + + Sbjct: 4 KKLKELRINNKLSQKQIAEQMNISQQAYAKWESGKNSPSLATLEKVANFFNLSIEELLSD 63 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 29/73 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +LK +R + +SQ + + + + + +E G+ P + K+ ++ + Sbjct: 1 MFSKKLKELRINNKLSQKQIAEQMNISQQAYAKWESGKNSPSLATLEKVANFFNLSIEEL 60 Query: 173 YFGDEVIVPKSIK 185 V + +K Sbjct: 61 LSDGTVSLDNLLK 73 >gi|30260266|ref|NP_842643.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42779154|ref|NP_976401.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47525328|ref|YP_016677.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183109|ref|YP_026361.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49479321|ref|YP_034428.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145140|ref|YP_081687.1| transcriptional regulator [Bacillus cereus E33L] gi|65317536|ref|ZP_00390495.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|118475846|ref|YP_892997.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165872558|ref|ZP_02217190.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635071|ref|ZP_02393388.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641513|ref|ZP_02399761.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170688934|ref|ZP_02880136.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707546|ref|ZP_02897999.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177655635|ref|ZP_02936998.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190569001|ref|ZP_03021902.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196036381|ref|ZP_03103778.1| DNA-binding protein [Bacillus cereus W] gi|196041773|ref|ZP_03109063.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047358|ref|ZP_03114571.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206977949|ref|ZP_03238836.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217957651|ref|YP_002336193.1| DNA-binding protein [Bacillus cereus AH187] gi|218901277|ref|YP_002449111.1| DNA-binding protein [Bacillus cereus AH820] gi|222093845|ref|YP_002527894.1| transcriptional regulator [Bacillus cereus Q1] gi|225862128|ref|YP_002747506.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227812749|ref|YP_002812758.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228912814|ref|ZP_04076462.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925328|ref|ZP_04088425.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931577|ref|ZP_04094484.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943881|ref|ZP_04106267.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229015477|ref|ZP_04172476.1| Transcriptional regulator Xre [Bacillus cereus AH1273] gi|229021686|ref|ZP_04178269.1| Transcriptional regulator Xre [Bacillus cereus AH1272] gi|229089206|ref|ZP_04220488.1| Transcriptional regulator Xre [Bacillus cereus Rock3-42] gi|229100872|ref|ZP_04231679.1| Transcriptional regulator Xre [Bacillus cereus Rock3-28] gi|229119737|ref|ZP_04248999.1| Transcriptional regulator Xre [Bacillus cereus 95/8201] gi|229136921|ref|ZP_04265549.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST26] gi|229159248|ref|ZP_04287273.1| Transcriptional regulator Xre [Bacillus cereus R309803] gi|229182469|ref|ZP_04309721.1| Transcriptional regulator Xre [Bacillus cereus BGSC 6E1] gi|229194465|ref|ZP_04321269.1| Transcriptional regulator Xre [Bacillus cereus m1293] gi|229603974|ref|YP_002864727.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254682298|ref|ZP_05146159.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724216|ref|ZP_05186001.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254735477|ref|ZP_05193185.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744621|ref|ZP_05202300.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254756326|ref|ZP_05208355.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762382|ref|ZP_05214224.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|300119170|ref|ZP_07056871.1| DNA-binding protein [Bacillus cereus SJ1] gi|301051813|ref|YP_003790024.1| putative transcriptional regulator [Bacillus anthracis CI] gi|30253587|gb|AAP24129.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42735069|gb|AAS39009.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47500476|gb|AAT29152.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177036|gb|AAT52412.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49330877|gb|AAT61523.1| probable transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978609|gb|AAU20159.1| probable transcriptional regulator [Bacillus cereus E33L] gi|118415071|gb|ABK83490.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|164711686|gb|EDR17231.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510498|gb|EDR85896.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529545|gb|EDR92295.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127542|gb|EDS96416.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170667158|gb|EDT17919.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172080046|gb|EDT65145.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190559925|gb|EDV13909.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195991011|gb|EDX54982.1| DNA-binding protein [Bacillus cereus W] gi|196021760|gb|EDX60454.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196027393|gb|EDX66010.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206743855|gb|EDZ55275.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217064728|gb|ACJ78978.1| DNA-binding protein [Bacillus cereus AH187] gi|218537235|gb|ACK89633.1| DNA-binding protein [Bacillus cereus AH820] gi|221237892|gb|ACM10602.1| probable transcriptional regulator [Bacillus cereus Q1] gi|225785876|gb|ACO26093.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227005378|gb|ACP15121.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228589055|gb|EEK47069.1| Transcriptional regulator Xre [Bacillus cereus m1293] gi|228601049|gb|EEK58617.1| Transcriptional regulator Xre [Bacillus cereus BGSC 6E1] gi|228624263|gb|EEK81064.1| Transcriptional regulator Xre [Bacillus cereus R309803] gi|228646586|gb|EEL02792.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST26] gi|228663762|gb|EEL19340.1| Transcriptional regulator Xre [Bacillus cereus 95/8201] gi|228682550|gb|EEL36620.1| Transcriptional regulator Xre [Bacillus cereus Rock3-28] gi|228694169|gb|EEL47850.1| Transcriptional regulator Xre [Bacillus cereus Rock3-42] gi|228739622|gb|EEL90035.1| Transcriptional regulator Xre [Bacillus cereus AH1272] gi|228745820|gb|EEL95823.1| Transcriptional regulator Xre [Bacillus cereus AH1273] gi|228815838|gb|EEM62073.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828129|gb|EEM73856.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834375|gb|EEM79915.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846874|gb|EEM91878.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268382|gb|ACQ50019.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|298723492|gb|EFI64233.1| DNA-binding protein [Bacillus cereus SJ1] gi|300373982|gb|ADK02886.1| probable transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324324065|gb|ADY19325.1| putative transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S S + + + ++S D + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSIDELMP 66 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ RK KG +Q F K LG+ S L E+G P ++ + K +D + Sbjct: 10 IRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSIDELM 65 >gi|326388769|ref|ZP_08210357.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206743|gb|EGD57572.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 243 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 +S + + + R K +G R++ +R+ + + ++A A ++ ENG S Sbjct: 36 ESFPTGSGAPSNDPRALEKALGARVRQLRRQQDLSVADLAGAAGLSTGMLSKIENGQISA 95 Query: 72 SIRYALYLRNEYEISFDWIY 91 S+ L + ++ Sbjct: 96 SLTSIHSLALALNVPISSLF 115 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 1/107 (0%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E +N R A+GAR++ +R+ + +S + G+ LS E G+ Sbjct: 36 ESFPTGSGAPSNDPRALEKALGARVRQLRRQQDLSVADLAGAAGLSTGMLSKIENGQISA 95 Query: 154 EIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKD 199 + + + ++ +E + +G + ++ K Sbjct: 96 SLTSIHSLALALNVPISSLFALAEERQDCSYVGAGQGVKIERRGTKS 142 >gi|229826250|ref|ZP_04452319.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC 49176] gi|229789120|gb|EEP25234.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC 49176] Length = 220 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + I R TQKE+A + ++ +E G I Y L N I + Sbjct: 4 EKISKFIATTRTKIGLTQKELADKIGVSDKTISKWETGKSLPDISYYESLCNALNIKVNE 63 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + GE + + Sbjct: 64 LLSGEALTEDVYLQKAETNF 83 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 40/82 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D I + + R G++Q E +G+ + T+S +E G+++P+I + Sbjct: 1 MDTEKISKFIATTRTKIGLTQKELADKIGVSDKTISKWETGKSLPDISYYESLCNALNIK 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 ++ + G+ + +++A+ N Sbjct: 61 VNELLSGEALTEDVYLQKAETN 82 >gi|167461704|ref|ZP_02326793.1| Transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384015|ref|ZP_08057743.1| hypothetical protein PL1_2071 [Paenibacillus larvae subsp. larvae B-3650] gi|321151382|gb|EFX44571.1| hypothetical protein PL1_2071 [Paenibacillus larvae subsp. larvae B-3650] Length = 152 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G IK +R+ +Q+E+A G ++ ++ E G+ S L + IS D Sbjct: 7 YIHIGKIIKQLRQKYKLSQEELAKGI-CSQAHISKIERGIQFPSGVMLYLLAQKLRISVD 65 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++++ E E K+ + + K Q + Sbjct: 66 YLFNPENAAEDKERKQIKEMIRKSIRFNDYEQALKIIADEQTQS 109 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +K +R+ +SQ E K + + +S E+G P + Q + +D Sbjct: 7 YIHIGKIIKQLRQKYKLSQEELAKGI-CSQAHISKIERGIQFPSGVMLYLLAQKLRISVD 65 Query: 171 WIYFGDEVIVPKSIKRAKG 189 +++ + K K+ K Sbjct: 66 YLFNPENAAEDKERKQIKE 84 >gi|220925537|ref|YP_002500839.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950144|gb|ACL60536.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 124 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+ R+ T K +A A + ++ E G +I L ++ D + Sbjct: 66 NRIRVWREHRGLTAKALAEKAGIAQPFLSQIETGRREGTIDTLRKLAQALNLTLDDLV 123 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ R+ +G++ + G+ LS E GR I RK+ Q LD + Sbjct: 65 ENRIRVWREHRGLTAKALAEKAGIAQPFLSQIETGRREGTIDTLRKLAQALNLTLDDLV 123 >gi|149185124|ref|ZP_01863441.1| transcriptional regulator, XRE family protein [Erythrobacter sp. SD-21] gi|148831235|gb|EDL49669.1| transcriptional regulator, XRE family protein [Erythrobacter sp. SD-21] Length = 67 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q+E+A +VN E G S+ A + + +E+ + I++ Sbjct: 7 NRLKVLRAMRDWSQQELADRLEVSRQSVNAIETGRYDPSLPLAFKIADVFEMPIEDIFER 66 Query: 94 E 94 + Sbjct: 67 D 67 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ RLK +R + SQ E L + +++ E GR P + A KI V + ++ Sbjct: 3 LAVKNRLKVLRAMRDWSQQELADRLEVSRQSVNAIETGRYDPSLPLAFKIADVFEMPIED 62 Query: 172 IYFGD 176 I+ D Sbjct: 63 IFERD 67 >gi|326385820|ref|ZP_08207449.1| hypothetical protein Y88_2877 [Novosphingobium nitrogenifigens DSM 19370] gi|326209799|gb|EGD60587.1| hypothetical protein Y88_2877 [Novosphingobium nitrogenifigens DSM 19370] Length = 129 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R +IRKA Q ++A A+ +E G L Y +S +W+ Sbjct: 3 IGARFLEIRKAKGLKQTDVAEAIGISHGALVNYEKGR-EPPASAILAFSQVYGVSANWLL 61 Query: 92 DGEVIDRRYEDVT 104 GE + Sbjct: 62 TGEGRPDAESLDS 74 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 IRK KG+ Q + + +G+ + L NYE+GR P QV +W+ G+ Sbjct: 9 EIRKAKGLKQTDVAEAIGISHGALVNYEKGR-EPPASAILAFSQVYGVSANWLLTGEGRP 67 Query: 180 VPKSIKR 186 +S+ Sbjct: 68 DAESLDS 74 >gi|325695606|gb|EGD37506.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] Length = 113 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R+K +RK TQ ++A + + A +E G+ + + + ++ D++ Sbjct: 2 KFGERLKILRKQVKLTQSQIAEKLDISQQAYASWERGVKKPTQENLIKIAQILNVTVDYL 61 Query: 91 YDGEVIDRRYEDVTN 105 D Sbjct: 62 VGNSEEQSDEFDNIE 76 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK +RK ++Q + + L + +++E+G P + KI Q+ +D+ Sbjct: 1 MKFGERLKILRKQVKLTQSQIAEKLDISQQAYASWERGVKKPTQENLIKIAQILNVTVDY 60 Query: 172 IYFGDEVIVPK 182 + E + Sbjct: 61 LVGNSEEQSDE 71 >gi|288917479|ref|ZP_06411845.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288351182|gb|EFC85393.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 98 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%) Query: 8 ETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG 67 E + + E T + + ++G ++++R+ +Q+E+A A +SAV FE G Sbjct: 9 ELRARRMGEPGARETYQAARLAFELGRSVRELRQRRGWSQEELARAAGMTQSAVARFEAG 68 Query: 68 MCSTSIRYALYLRNEYEISFD 88 ++ L + D Sbjct: 69 GTVPTLPVLERLAEALDADLD 89 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +G ++ +R+ +G SQ E + GM S ++ +E G T+P + ++ + LD Sbjct: 31 FELGRSVRELRQRRGWSQEELARAAGMTQSAVARFEAGGTVPTLPVLERLAEALDADLD 89 >gi|317054283|ref|YP_004118308.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952278|gb|ADU71752.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 192 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 27/70 (38%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + + +G ++K R+ + ++A + + ++ E G S + L Sbjct: 6 SSKEDSINIRIGQKVKAEREKRGWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLAG 65 Query: 82 EYEISFDWIY 91 +++S + Sbjct: 66 SFDMSMSQLI 75 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K+ R+ +G S + + G+ + + E+G + P ++ + + Sbjct: 18 QKVKAEREKRGWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLAGSFDMSMSQLIAL 77 Query: 176 DEVIVPKSIKRAK 188 EV I++A+ Sbjct: 78 SEVQTGTLIRQAQ 90 >gi|255527482|ref|ZP_05394352.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296187568|ref|ZP_06855963.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|308390326|ref|YP_003933779.1| XRE family transcriptional regulator [Clostridium carboxidivorans P7] gi|255508825|gb|EET85195.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296048090|gb|EFG87529.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|308066833|gb|ADO12137.1| XRE family transcriptional regulator [Clostridium carboxidivorans P7] Length = 236 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGAN-----QLESAVNLFENGMCSTSIRYALYLRNEYEI 85 G R+K++R+ + TQ ++A + ++ +ENG S + + + + + Sbjct: 3 KFGKRLKELREEFDLTQSDLASNLSTKEHVVSTQNISYWENGR-EPSYDILVKIADRFNV 61 Query: 86 SFDWI 90 + D++ Sbjct: 62 TTDYL 66 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLG-----MPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 G RLK +R++ ++Q + L + +S +E GR P KI Sbjct: 4 FGKRLKELREEFDLTQSDLASNLSTKEHVVSTQNISYWENGR-EPSYDILVKIADRFNVT 62 Query: 169 LDWI 172 D++ Sbjct: 63 TDYL 66 >gi|218132921|ref|ZP_03461725.1| hypothetical protein BACPEC_00782 [Bacteroides pectinophilus ATCC 43243] gi|217991794|gb|EEC57798.1| hypothetical protein BACPEC_00782 [Bacteroides pectinophilus ATCC 43243] Length = 70 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+ ++RK N Q E+A + ENG + S++ A+ + ++ + + I+ E Sbjct: 7 RLHELRKERNMQQAELAKLVGVRRETIGNLENGRYNPSLKLAMDIAKVFDTTVEDIFTFE 66 Query: 95 VIDR 98 D Sbjct: 67 DDDE 70 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L +RK++ M Q E KL+G+ T+ N E GR P +K A I +V ++ I+ ++ Sbjct: 8 LHELRKERNMQQAELAKLVGVRRETIGNLENGRYNPSLKLAMDIAKVFDTTVEDIFTFED 67 Query: 178 V 178 Sbjct: 68 D 68 >gi|217965105|ref|YP_002350783.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290893768|ref|ZP_06556748.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|217334375|gb|ACK40169.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290556717|gb|EFD90251.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|307570335|emb|CAR83514.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes L99] gi|313609965|gb|EFR85345.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 180 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 DIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|159898022|ref|YP_001544269.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891061|gb|ABX04141.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 71 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 31/69 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +R +Q ++A +N E G S+ A + + +E++ + I++ Sbjct: 3 NRLRVLRAEREWSQADLAQALGVSRQTINALETGKYDPSLPLAFKIADLFELAIEQIFER 62 Query: 94 EVIDRRYED 102 D+ E+ Sbjct: 63 PSADQATEE 71 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R ++ SQ + + LG+ T++ E G+ P + A KI + + ++ I+ Sbjct: 1 MKNRLRVLRAEREWSQADLAQALGVSRQTINALETGKYDPSLPLAFKIADLFELAIEQIF 60 >gi|53748387|emb|CAH58723.1| hypothetical protein [Clostridium sp. RKD] Length = 114 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ+++A +AV+ +E+G I + + ++ D + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFIGISTAAVSKWESGTSYPDITLLPVIATFFNVTIDTLL 65 Query: 92 D 92 + Sbjct: 66 N 66 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + +RK+K ++Q + +G+ + +S +E G + P+I I Sbjct: 1 MEKLLIGEVIYRLRKEKAITQEQLANFIGISTAAVSKWESGTSYPDITLLPVIATFFNVT 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + + Sbjct: 61 IDTLLNFKIQLSDEEV 76 >gi|325479315|gb|EGC82411.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 177 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 33/84 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RK TQK++A+ + ++ ENG+ S + + ++ + + Sbjct: 4 ENIKRLRKEKGFTQKDLAVKVGVSITFISQIENGISKPSDENLKKIADVLGVTVNELEKE 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR 117 + + E ++ L I Sbjct: 64 KSLSPIEELLSLLIELTEKEIIKW 87 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K +RK+KG +Q + +G+ + +S E G + P + +KI V ++ + Sbjct: 1 MLNENIKRLRKEKGFTQKDLAVKVGVSITFISQIENGISKPSDENLKKIADVLGVTVNEL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + + + K+ K Sbjct: 61 EKEKSLSPIEELLSLLIELTEKEIIK 86 >gi|324328969|gb|ADY24229.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 69 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R++++R + +Q ++ ++L E G + SI +L + + + + I++ Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFE 63 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +R +SQ + GK +G T+S E+G P I + KI Q+ ++ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEE 60 Query: 172 IY 173 I+ Sbjct: 61 IF 62 >gi|323487380|ref|ZP_08092678.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14163] gi|323693858|ref|ZP_08108049.1| hypothetical protein HMPREF9475_02912 [Clostridium symbiosum WAL-14673] gi|323399286|gb|EGA91686.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14163] gi|323502110|gb|EGB17981.1| hypothetical protein HMPREF9475_02912 [Clostridium symbiosum WAL-14673] Length = 115 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 28/85 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K RKA TQ +A + E G + + IS W+ Sbjct: 3 IGERLKIARKARGYTQDSLAEALGMSRGVITNIEYGRAEPQTLVIKAICDILHISQTWLM 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 G D+ RL Y A Sbjct: 63 TGNGNMDIDFDLEKSARLLSYIYNA 87 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK RK +G +Q + LGM ++N E GR P+ + I + W Sbjct: 1 MTIGERLKIARKARGYTQDSLAEALGMSRGVITNIEYGRAEPQTLVIKAICDILHISQTW 60 Query: 172 IYFGD 176 + G+ Sbjct: 61 LMTGN 65 >gi|323174633|gb|EFZ60254.1| repressor protein C2 [Escherichia coli LT-68] Length = 240 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALY 78 I + E R+ K +G R+ + R+ TQ +A A A++ E G S + Sbjct: 14 ISSHERRRKMKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFK 73 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTN 105 + + S W+ +G+ + +E+ Sbjct: 74 VAAALQCSPQWLQNGDEKGKYWENNVK 100 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIK 156 + ++++R ++G RL + R+ G++Q K G+ +S EQG T Sbjct: 10 CYFSISSHERRRKMKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGD 69 Query: 157 PARKIKQVTKKHLDWIYFGDE 177 K+ + W+ GDE Sbjct: 70 TLFKVAAALQCSPQWLQNGDE 90 >gi|302391895|ref|YP_003827715.1| XRE family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203972|gb|ADL12650.1| transcriptional regulator, XRE family [Acetohalobium arabaticum DSM 5501] Length = 184 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 32/85 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++GT++ IRK + ++ +S + E G + +++ + Sbjct: 1 MEDIDLNIGTKLHQIRKKKGYSLSKLEEVTEVSKSMLGQIERGTSNPTVKTLWKIAKGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + E + + K L Sbjct: 61 VSFSTFIEEESSEVSIVSPADTKPL 85 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L IRK KG S + ++ + S L E+G + P +K KI + + Sbjct: 12 LHQIRKKKGYSLSKLEEVTEVSKSMLGQIERGTSNPTVKTLWKIAKGLNVSFSTFIEEE 70 >gi|266621149|ref|ZP_06114084.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288867198|gb|EFC99496.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 66 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R ++ +Q+++ +++ E+G + ++ + + E + D ++ Sbjct: 4 KRLKIARIEHDLSQEQLGERVGVTRQTISMIESGNYNPTLNLCIAICKELGKTLDELF 61 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK R + +SQ + G+ +G+ T+S E G P + I + K LD + Sbjct: 1 MKNKRLKIARIEHDLSQEQLGERVGVTRQTISMIESGNYNPTLNLCIAICKELGKTLDEL 60 Query: 173 YFG 175 ++ Sbjct: 61 FWE 63 >gi|271966776|ref|YP_003340972.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509951|gb|ACZ88229.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 198 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 26/86 (30%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 E + +P Q + R+ +R + +E+A S ++ E S + Sbjct: 5 EEATLQSPGSEQVEARLADRLAQLRVERGWSLEELAQRTGVSRSTLSRLERMEISPTAAM 64 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYE 101 L Y + + + Sbjct: 65 LGKLCAAYGRTMSQLLAEAEAEPPQT 90 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L +R ++G S E + G+ STLS E+ P K+ + + + E Sbjct: 25 LAQLRVERGWSLEELAQRTGVSRSTLSRLERMEISPTAAMLGKLCAAYGRTMSQLLAEAE 84 Query: 178 VIVPKSIKRAK 188 P++++ + Sbjct: 85 AEPPQTVRADR 95 >gi|256389247|ref|YP_003110811.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355473|gb|ACU68970.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 220 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 7/140 (5%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE-----ISFDWI 90 ++ R +Q +A G AV+ +E G ++ + + E + D Sbjct: 20 LRSARLDAELSQNALATGLPVRGRAVSEWETGAIEPTLGHLIQWSWELGRRLVIVGRDGE 79 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + +R ++ A+ L++ R GM+Q E G+L+G+ ++ +E R Sbjct: 80 LRYGPVRQRPGELWEAFERRRLAVP--LRNRRLALGMAQGELGELVGVSRDSIQRWELVR 137 Query: 151 TIPEIKPARKIKQVTKKHLD 170 P Q LD Sbjct: 138 VPPRPIAHVVWAQKLGYSLD 157 >gi|255306540|ref|ZP_05350711.1| XRE family transcriptional regulator [Clostridium difficile ATCC 43255] Length = 73 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K++R N QK++A+ S + E+G S+ A+ L + +S + I+ Sbjct: 2 NNLKELRTERNLKQKDVALKVGITTSYYGMIESGTRVPSLAIAIKLSKCFGVSIEKIF 59 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R ++ + Q + +G+ S E G +P + A K+ + ++ I+ Sbjct: 1 MNNLKELRTERNLKQKDVALKVGITTSYYGMIESGTRVPSLAIAIKLSKCFGVSIEKIF 59 >gi|217961397|ref|YP_002339965.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187] gi|229140643|ref|ZP_04269194.1| Prophage LambdaBa02, repressor protein [Bacillus cereus BDRD-ST26] gi|217063695|gb|ACJ77945.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187] gi|228642816|gb|EEK99096.1| Prophage LambdaBa02, repressor protein [Bacillus cereus BDRD-ST26] Length = 122 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 8/75 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN--------QLESAVNLFENGMCSTSIRYALYLRNEY 83 +G RIK RK TQ +A+ ++ ++ +E G S S + + + Sbjct: 4 LGQRIKLSRKKRGLTQDALALKIKEKMDTETKVTKTTISNYETGYSSPSNETLVIISDVL 63 Query: 84 EISFDWIYDGEVIDR 98 ++S D++ Sbjct: 64 DVSVDYLLGRSDDPE 78 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 8/88 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLG--------MPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 R+K RK +G++Q + + +T+SNYE G + P + I V Sbjct: 6 QRIKLSRKKRGLTQDALALKIKEKMDTETKVTKTTISNYETGYSSPSNETLVIISDVLDV 65 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 +D++ + +++ + + + Sbjct: 66 SVDYLLGRSDDPELNAVQFTELRKEFNE 93 >gi|125718672|ref|YP_001035805.1| YorfE protein [Streptococcus sanguinis SK36] gi|323350334|ref|ZP_08085999.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|125498589|gb|ABN45255.1| YorfE protein, putative [Streptococcus sanguinis SK36] gi|322123519|gb|EFX95190.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|328945063|gb|EGG39219.1| transcriptional regulator [Streptococcus sanguinis SK1087] Length = 71 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFW 60 Query: 175 GDEVIVPKS 183 ++ S Sbjct: 61 EPQLTDEDS 69 >gi|77454599|ref|YP_345467.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|77019599|dbj|BAE45975.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 159 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 18/137 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R A ++ +++ + V+ +E S + + I D + Sbjct: 22 LEKARTAAKISRGDLSRAIGVDPTTVHNWETERSQPSPDHLARAAEQLGIPLDQLIVVPE 81 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 +R + +R GM+Q + G+ +T+ E+G Sbjct: 82 KNRT------------------IADLRNLAGMTQKDIAGRTGLSTTTIGRIERGEGTLAD 123 Query: 156 KPARKIKQVTKKHLDWI 172 + A + + + I Sbjct: 124 RHATALGEALHVEIQTI 140 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 L+ R +S+ + + +G+ +T+ N+E R+ P + + LD + Sbjct: 19 PKALEKARTAAKISRGDLSRAIGVDPTTVHNWETERSQPSPDHLARAAEQLGIPLDQLI- 77 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKD 199 V+ K+ A + ++KD Sbjct: 78 ---VVPEKNRTIADLRNLAGMTQKD 99 >gi|327441218|dbj|BAK17583.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 180 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 30/79 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G++IK +R TQ+E+ + + ++ E + S SI L + Sbjct: 2 QIGSKIKALRIKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFNLLEVLGCTPRDF 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 +D + + + + Sbjct: 62 FDDTQENEKIVFTKDDQTC 80 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+++K++R KG++Q E G+ + +S E+ P I+ + +V Sbjct: 1 MQIGSKIKALRIKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFNLLEVLGCTPRD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + D+ + I K +Q+ Sbjct: 61 FF--DDTQENEKIVFTKDDQT 79 >gi|224148667|ref|XP_002336695.1| predicted protein [Populus trichocarpa] gi|222836536|gb|EEE74943.1| predicted protein [Populus trichocarpa] Length = 63 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R ++G SQ LLG+ T++ E GR P + A I +V + ++ I+ Sbjct: 1 MKNTIRELRAERGWSQAALADLLGVSRQTVNAIETGRYDPSLPLAFAIARVFETRIEAIF 60 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I+++R +Q +A VN E G S+ A + +E + I+ Sbjct: 5 IRELRAERGWSQAALADLLGVSRQTVNAIETGRYDPSLPLAFAIARVFETRIEAIFQ 61 >gi|167465026|ref|ZP_02330115.1| Transcriptional regulator, MerR family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 181 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G +++ RKA + +E+A A S ++ E G+ + SI+ L ++ + Sbjct: 5 DIGKKVEKYRKAKGLSSRELAKLAEITPSMLSQIERGLANPSIQTLKVLAKTLDVPTFSF 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + + D + +K++ Sbjct: 65 LLEETNTDDLIVRSSKRKKM 84 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK KG+S E KL + S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKVEKYRKAKGLSSRELAKLAEITPSMLSQIERGLANPSIQTLKVLAKTLDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 + ++ +K + Sbjct: 61 TFSFLLEETNTDDLIVRSSKRKK 83 >gi|153811810|ref|ZP_01964478.1| hypothetical protein RUMOBE_02203 [Ruminococcus obeum ATCC 29174] gi|149832213|gb|EDM87298.1| hypothetical protein RUMOBE_02203 [Ruminococcus obeum ATCC 29174] Length = 209 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R+K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + ++ A+G L+ + Sbjct: 64 VSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 99 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 12 SRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 70 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 71 GETDEYETDITDKRE 85 >gi|190015098|ref|YP_001966668.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|190015364|ref|YP_001966993.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|218848302|ref|YP_002455035.1| transcriptional regulator [Bacillus cereus AH820] gi|116584774|gb|ABK00889.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|116585045|gb|ABK01154.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|218540353|gb|ACK92749.1| transcriptional regulator [Bacillus cereus AH820] Length = 64 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K IR TQ E+A N + L E G + S++ + + ++ + ++ E Sbjct: 4 KVKRIRLEKGMTQGELAKITNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLFWEE 63 Query: 95 V 95 Sbjct: 64 D 64 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K IR +KGM+Q E K+ + T+ E+G P +K +I + L+ +++ ++ Sbjct: 5 VKRIRLEKGMTQGELAKITNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLFWEED 64 >gi|86157299|ref|YP_464084.1| transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773810|gb|ABC80647.1| transcriptional regulator, XRE family with cupin sensor domain protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 192 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 29/72 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + P + VGT ++ +R + + ++++ + + + E G + +I + Sbjct: 1 MAPAGKDLTPVVGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKIS 60 Query: 81 NEYEISFDWIYD 92 + + F + Sbjct: 61 SALGVPFSALIT 72 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 L+ +R + +S + KL G+ + L E G++ P I KI + Sbjct: 15 NLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALGVPFSALIT 72 >gi|330808460|ref|YP_004352922.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376568|gb|AEA67918.1| Putative transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 104 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +G I+ RK TQ E+ ++ FE G + S+ L N ++ Sbjct: 6 LGPAIRRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLANVLDV 59 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + ++G ++ RK G++Q E G+ G T+S +E G P ++ + V Sbjct: 1 MQISSLGPAIRRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLANVLDVQ 60 Query: 169 LDWIY--FGDEV 178 L + GDE Sbjct: 61 LKAFFADMGDED 72 >gi|125624656|ref|YP_001033139.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124493464|emb|CAL98438.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300071447|gb|ADJ60847.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 85 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 13 SLQEYTLIITPEIRQYWK-DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 SL+++ ++ E+ + D+ T I++ R A TQ ++A + AV +E G C Sbjct: 5 SLKDFQILGDNELMEIKGGDLSTNIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEP 64 Query: 72 SIRYALYLRNEYEISFDWIYD 92 +I L + IS D + Sbjct: 65 NIETLKALATLFNISVDKLIR 85 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 31/78 (39%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 D + + + +++ R G++Q + + L + N+E+G+ P I Sbjct: 7 KDFQILGDNELMEIKGGDLSTNIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEPNI 66 Query: 156 KPARKIKQVTKKHLDWIY 173 + + + + +D + Sbjct: 67 ETLKALATLFNISVDKLI 84 >gi|15643421|ref|NP_228465.1| hypothetical protein TM0656 [Thermotoga maritima MSB8] gi|4981179|gb|AAD35740.1|AE001739_3 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 176 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R + TQ+E+A + S ++ E+ S SI + + Sbjct: 3 IGEKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 +R + + Sbjct: 63 SDVEEERIVFKKEERVPV 80 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+ +R +G++Q E + + S +S E +T P I +I + L Sbjct: 1 MRIGEKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKH 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + E K + Sbjct: 61 FFSDVEEERIVFKKEER 77 >gi|333026335|ref|ZP_08454399.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332746187|gb|EGJ76628.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 291 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+A N T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDL 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHTFGD 94 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ + M+ E + L + S +S E GR + R + V + Sbjct: 16 QELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 >gi|333023200|ref|ZP_08451264.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332743052|gb|EGJ73493.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 204 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + V ++++R+ T + A A+ + ++ E G S+ L L Y Sbjct: 10 EELAVTVAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGT 69 Query: 86 SFDWIY 91 + + Sbjct: 70 TVSELL 75 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+ +R+ G++ K + + LS E GR P + + + + + G+ Sbjct: 19 HLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL-GE 77 Query: 177 EVIVPKSIKRA 187 P S+ RA Sbjct: 78 TPAGPGSVVRA 88 >gi|325261427|ref|ZP_08128165.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032881|gb|EGB94158.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 67 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I++IR+ +KTQKE+A N ++ + +E G + + L + Y ++ D++ Sbjct: 4 ENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYLLGR 63 Query: 94 EVID 97 Sbjct: 64 TNQK 67 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I +++IR+DK +Q E L + +T S YE G+ ++ K+ + +D++ Sbjct: 1 MIYENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|319647196|ref|ZP_08001418.1| immunity repressor protein [Bacillus sp. BT1B_CT2] gi|317390543|gb|EFV71348.1| immunity repressor protein [Bacillus sp. BT1B_CT2] Length = 147 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 4/93 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R+K RK TQ ++A AN S V E + S+ + I + Sbjct: 3 VGQRLKYWRKQKGYTQAQLAEKANMSRSYVADVERDRYNPSVETLSSIAKALNIPVSNLL 62 Query: 92 DGEVI----DRRYEDVTNKKRLDPYAIGARLKS 120 + + K D ++K Sbjct: 63 EDNQRLVSESPEEYRTSEKDEKDIAKRMEQIKK 95 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G RLK RK KG +Q + + M S +++ E+ R P ++ I + + Sbjct: 1 MSVGQRLKYWRKQKGYTQAQLAEKANMSRSYVADVERDRYNPSVETLSSIAKALNIPVSN 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS--------KKDKKSS 203 + ++ +V +S + + ++ +K KKD K++ Sbjct: 61 LLEDNQRLVSESPEEYRTSEKDEKDIAKRMEQIKKDLKNA 100 >gi|283784131|ref|YP_003363996.1| transcriptional regulator of the polyamine metabolism genes [Citrobacter rodentium ICC168] gi|282947585|emb|CBG87140.1| transcriptional regulator of the polyamine metabolism genes [Citrobacter rodentium ICC168] Length = 185 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQKQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDL 85 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A G RL IR+ +G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 4 DGLAPGKRLSEIRQKQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 Query: 170 DWIYFGDEVIVPKSI 184 + E + Sbjct: 64 SEFFSEPEKPDEPQV 78 >gi|295835540|ref|ZP_06822473.1| DNA-binding protein [Streptomyces sp. SPB74] gi|197699432|gb|EDY46365.1| DNA-binding protein [Streptomyces sp. SPB74] Length = 204 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + V ++++R+ T + A A+ + ++ E G S+ L L Y Sbjct: 10 EELAVTVAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGT 69 Query: 86 SFDWIY 91 + + Sbjct: 70 TVSELL 75 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+ +R+ G++ K + + LS E GR P + + + + + G+ Sbjct: 19 HLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL-GE 77 Query: 177 EVIVPKSIKRA 187 P ++ RA Sbjct: 78 TPAGPGAVVRA 88 >gi|148266749|ref|YP_001245692.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392790|ref|YP_001315465.1| hypothetical protein SaurJH1_0316 [Staphylococcus aureus subsp. aureus JH1] gi|258419674|ref|ZP_05682641.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258448642|ref|ZP_05696755.1| transcriptional regulator [Staphylococcus aureus A6224] gi|269203649|ref|YP_003282918.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282925315|ref|ZP_06332972.1| XRE family transcriptional regulator [Staphylococcus aureus A9765] gi|283771021|ref|ZP_06343912.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|284024165|ref|ZP_06378563.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|295407180|ref|ZP_06816981.1| XRE family transcriptional regulator [Staphylococcus aureus A8819] gi|297245933|ref|ZP_06929792.1| XRE family transcriptional regulator [Staphylococcus aureus A8796] gi|147739818|gb|ABQ48116.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149945242|gb|ABR51178.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257844259|gb|EEV68641.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257858273|gb|EEV81161.1| transcriptional regulator [Staphylococcus aureus A6224] gi|262075939|gb|ACY11912.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282592591|gb|EFB97601.1| XRE family transcriptional regulator [Staphylococcus aureus A9765] gi|283459615|gb|EFC06706.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|294968033|gb|EFG44061.1| XRE family transcriptional regulator [Staphylococcus aureus A8819] gi|297177097|gb|EFH36351.1| XRE family transcriptional regulator [Staphylococcus aureus A8796] gi|315130281|gb|EFT86268.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus CGS03] Length = 107 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK +RK NN + A +S ++ +ENG + + N +++ +++ Sbjct: 6 EIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYL 65 Query: 91 Y 91 Sbjct: 66 L 66 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK+ ++ +F +G+ STLS YE G ++ +I K +++ + Sbjct: 11 IKQLRKENNVNLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYLLLKNR 70 Query: 178 VIVPKSIKRA 187 + RA Sbjct: 71 QTENEVQHRA 80 >gi|45657868|ref|YP_001954.1| hypothetical protein LIC12016 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294827975|ref|NP_712061.2| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45601109|gb|AAS70591.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385820|gb|AAN49079.2| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] Length = 135 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 7/135 (5%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDR 98 +RK Q +MA S ++ E G + ++ + + + +++ E ++ Sbjct: 2 LRKKRGIKQYDMARALGVSPSYLSKIETGSQDPTEKFKQACVKYLKTTLEKLFNEEPVED 61 Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 Y + T +A R++ G+ Q + K L + LS E G P Sbjct: 62 VYPEFTEGLTNKLWAK-------RRELGIKQYDMAKKLKVSTPFLSKVELGLLEPPEDFK 114 Query: 159 RKIKQVTKKHLDWIY 173 + K + ++ Sbjct: 115 NMASKALKMKKEELF 129 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD--EV 178 +RK +G+ Q + + LG+ S LS E G P K + + K L+ ++ + E Sbjct: 2 LRKKRGIKQYDMARALGVSPSYLSKIETGSQDPTEKFKQACVKYLKTTLEKLFNEEPVED 61 Query: 179 IVPKSIKRAKGNQSSKKSKKDKK 201 + P+ + +K+ + K Sbjct: 62 VYPEFTEGLTNKLWAKRRELGIK 84 Score = 35.7 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 7/70 (10%), Positives = 25/70 (35%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ + + ++ R+ Q +MA ++ E G+ + ++ Sbjct: 65 EFTEGLTNKLWAKRRELGIKQYDMAKKLKVSTPFLSKVELGLLEPPEDFKNMASKALKMK 124 Query: 87 FDWIYDGEVI 96 + ++ +V Sbjct: 125 KEELFLQKVE 134 >gi|30265072|ref|NP_847449.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778382|ref|YP_021927.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|65317017|ref|ZP_00389976.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165870871|ref|ZP_02215523.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|228930058|ref|ZP_04093068.1| hypothetical protein bthur0010_47400 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948759|ref|ZP_04111036.1| hypothetical protein bthur0007_48830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124568|ref|ZP_04253753.1| hypothetical protein bcere0016_48520 [Bacillus cereus 95/8201] gi|30259749|gb|AAP28935.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47552087|gb|AAT34402.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164713380|gb|EDR18905.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|228658908|gb|EEL14563.1| hypothetical protein bcere0016_48520 [Bacillus cereus 95/8201] gi|228810891|gb|EEM57235.1| hypothetical protein bthur0007_48830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829557|gb|EEM75184.1| hypothetical protein bthur0010_47400 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 79 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 31/68 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFN 61 Query: 85 ISFDWIYD 92 + + I+ Sbjct: 62 VPVEEIFT 69 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI + Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIF 60 Query: 166 KKHLDWIYF 174 ++ I+ Sbjct: 61 NVPVEEIFT 69 >gi|319649465|ref|ZP_08003621.1| hypothetical protein HMPREF1013_00225 [Bacillus sp. 2_A_57_CT2] gi|317398627|gb|EFV79309.1| hypothetical protein HMPREF1013_00225 [Bacillus sp. 2_A_57_CT2] Length = 148 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 6/94 (6%) Query: 32 VGTRIKDIRKANN-----KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G R++ +R+ TQ +A +ENG I L + +++S Sbjct: 4 LGKRLRQLREEKKKENSKFTQGYVANLIGVARVTYTSYENGTKQPPIETVNKLADVFDVS 63 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 D++ G R+ VT K D +++ Sbjct: 64 TDYL-QGRSDSRKAAIVTEKDEKDIAKRMEQIRE 96 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 5/97 (5%) Query: 111 PYAIGARLKSIRKDKG-----MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +G RL+ +R++K +Q L+G+ T ++YE G P I+ K+ V Sbjct: 1 MNILGKRLRQLREEKKKENSKFTQGYVANLIGVARVTYTSYENGTKQPPIETVNKLADVF 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 D++ + + +K+ ++ ++ Sbjct: 61 DVSTDYLQGRSDSRKAAIVTEKDEKDIAKRMEQIRED 97 >gi|313616306|gb|EFR89310.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria innocua FSL S4-378] Length = 101 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 4/91 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLES-AVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ +R + ++ E+A S + +E G I + + Y +S D++ Sbjct: 4 LSKKLEYLRNSKGWSKVEVAKRLGMKASSTYSNWEYGNREPDIDTLKRIADLYGVSVDYL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +D A +K I Sbjct: 64 LGRQKNKLVDTI---AAHIDADASEEDIKEI 91 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + +L+ +R KG S++E K LGM +ST SN+E G P+I ++I + + Sbjct: 1 MNTLSKKLEYLRNSKGWSKVEVAKRLGMKASSTYSNWEYGNREPDIDTLKRIADLYGVSV 60 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 D++ + + +I +S++ K+ Sbjct: 61 DYLLGRQKNKLVDTIAAHIDADASEEDIKE 90 >gi|254882005|ref|ZP_05254715.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640988|ref|ZP_07995695.1| bacteriophage CI repressor protein [Bacteroides sp. 3_1_40A] gi|254834798|gb|EET15107.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387366|gb|EFV68238.1| bacteriophage CI repressor protein [Bacteroides sp. 3_1_40A] Length = 150 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE-ISFDWIYD 92 RI I + + T + A S+++ +G + S+ + + + IS DW+ Sbjct: 3 ERIAQIIQKEDMTAAQFAEKIGISPSSLSHILSGRNNPSLEVVMKIHKACDYISLDWLLY 62 Query: 93 GEVIDRRYEDVTNKKR 108 GE D N Sbjct: 63 GEGQMETDVDSDNNIH 78 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK-KHLDWI 172 + R+ I + + M+ +F + +G+ S+LS+ GR P ++ KI + LDW+ Sbjct: 1 MKERIAQIIQKEDMTAAQFAEKIGISPSSLSHILSGRNNPSLEVVMKIHKACDYISLDWL 60 Query: 173 YFGDEVIV 180 +G+ + Sbjct: 61 LYGEGQME 68 >gi|254466475|ref|ZP_05079886.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206687383|gb|EDZ47865.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 110 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 31/91 (34%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 TQ ++A +S ++ +E + L +S W+ GE Sbjct: 1 MTQGQLARRLGIKKSTLSAWERDLAEPRANKLTMLAGVLNVSMSWLLTGEGEGMSEPAPL 60 Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + D +I L+ +R + + +L Sbjct: 61 ELEAGDFTSILNELRDLRSEMRQNAERAARL 91 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPK 182 M+Q + + LG+ STLS +E+ P + V + W+ G+ + + Sbjct: 1 MTQGQLARRLGIKKSTLSAWERDLAEPRANKLTMLAGVLNVSMSWLLTGEGEGMSE 56 >gi|217973784|ref|YP_002358535.1| putative phage repressor [Shewanella baltica OS223] gi|217498919|gb|ACK47112.1| putative phage repressor [Shewanella baltica OS223] Length = 243 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE---NGMCSTSIRYALYLRNEYEIS 86 K +G RI + RK +Q +A +V+ +E S + L + + Sbjct: 3 KSMGKRIAERRKELGLSQDVVAKYVGINRVSVSNWETDGKNGTSPKGANLIALAELLKCT 62 Query: 87 FDWIYDGEVIDRRYED 102 +W+ +GE + E+ Sbjct: 63 PEWLLNGEDEALKTEN 78 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE---QGRTIPEIKPARKIKQVTKKHL 169 ++G R+ RK+ G+SQ K +G+ ++SN+E + T P+ + ++ K Sbjct: 4 SMGKRIAERRKELGLSQDVVAKYVGINRVSVSNWETDGKNGTSPKGANLIALAELLKCTP 63 Query: 170 DWIYFGDEVIVPKSIKRAKGN 190 +W+ G++ + + + Sbjct: 64 EWLLNGEDEALKTENRESNAQ 84 >gi|219847677|ref|YP_002462110.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541936|gb|ACL23674.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 181 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I +R+ T +E++ G+ S ++ E + S+ L + + + Sbjct: 3 LGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVKMTHFF 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 +GE + + V +R+ Sbjct: 63 EGEDNQQVGQVVRPAERV 80 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 35/75 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ +R+++G++ E + G+ S LS E+ + + RK+ Q + Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVKMTH 60 Query: 172 IYFGDEVIVPKSIKR 186 + G++ + R Sbjct: 61 FFEGEDNQQVGQVVR 75 >gi|150398491|ref|YP_001328958.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030006|gb|ABR62123.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 234 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 33/106 (31%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 P L Q+ I + +G ++ RK T ++A + ++ Sbjct: 20 PGLTRVTPLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKI 79 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 ENG S S+ L + + + V + +D Sbjct: 80 ENGNTSPSLTTLQTLSRALGVPITAFFRRFEEEHSAVFVKAGEGVD 125 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 1/108 (0%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + ++++ AIG +++ RK G++ + + LS E G T P + Sbjct: 31 DPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKIENGNTSPSLTT 90 Query: 158 ARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + + +E +K +G ++ + N Sbjct: 91 LQTLSRALGVPITAFFRRFEEEHSAVFVKAGEGVDVERRGTRAGHQYN 138 >gi|41407155|ref|NP_959991.1| hypothetical protein MAP1057c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395506|gb|AAS03374.1| hypothetical protein MAP_1057c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 178 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R+ T + +A +S ++ E G + SI AL + ++ ++ E Sbjct: 5 LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDET 64 Query: 96 IDRR 99 + Sbjct: 65 AREK 68 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + A L+ +R+ +G++ G+ S LS E+G++ P I A K+ + + ++ Sbjct: 1 MTALLRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60 Query: 174 FGDEVIVPKSIKRAKG 189 + +++RA G Sbjct: 61 SDETAREKIAVERAGG 76 >gi|83594572|ref|YP_428324.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577486|gb|ABC24037.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 149 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 25/82 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ R A Q+ +A + +E G S + + D+ + Sbjct: 22 VGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDIAKALAVPIDYFF 81 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 D + + A Sbjct: 82 SDLERGDPRHDGALAEDMGRLA 103 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 30/87 (34%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 + E T +G R++ R + Q + +G+ + YE+GR Sbjct: 4 RETMPESDTRTIHHVDAHVGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISA 63 Query: 156 KPARKIKQVTKKHLDWIYFGDEVIVPK 182 I + +D+ + E P+ Sbjct: 64 SRLYDIAKALAVPIDYFFSDLERGDPR 90 >gi|18310949|ref|NP_562883.1| DNA-binding protein [Clostridium perfringens str. 13] gi|110801118|ref|YP_696646.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|168204849|ref|ZP_02630854.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168208668|ref|ZP_02634293.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168212998|ref|ZP_02638623.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|168215593|ref|ZP_02641218.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|169343522|ref|ZP_02864521.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|182624367|ref|ZP_02952151.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|18145631|dbj|BAB81673.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110675765|gb|ABG84752.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|169298082|gb|EDS80172.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170663587|gb|EDT16270.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170713177|gb|EDT25359.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170715478|gb|EDT27660.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|177910370|gb|EDT72747.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182382433|gb|EDT79912.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 179 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ +R A TQ+E+A + ++ EN + S SI + + + + Sbjct: 2 EIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ + + + L + Sbjct: 62 FSEDTNEKIAFSKDDMFETENEELKYNLMWL 92 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 31/88 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R K ++Q E + +S E T P I I + +L Sbjct: 1 MEIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + D K +++ K + Sbjct: 61 FFSEDTNEKIAFSKDDMFETENEELKYN 88 >gi|194433805|ref|ZP_03066079.1| transcriptional regulator PuuR [Shigella dysenteriae 1012] gi|194417908|gb|EDX34003.1| transcriptional regulator PuuR [Shigella dysenteriae 1012] gi|332098182|gb|EGJ03155.1| helix-turn-helix family protein [Shigella dysenteriae 155-74] Length = 185 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRLDPY 112 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDLIEM 88 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ +G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 66 FFSEPEKPDEPQV 78 >gi|288818209|ref|YP_003432557.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6] gi|288787609|dbj|BAI69356.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6] Length = 235 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 28/67 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R++ +RK +Q+E + + +E G + + + +S++W+ Sbjct: 11 NIHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQIPDTALKLIASTFGVSYEWL 70 Query: 91 YDGEVID 97 G+ Sbjct: 71 KTGQGEM 77 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I RL+ +RK G+SQ EFG+ +G T+ +E G + I +W+ Sbjct: 12 IHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQIPDTALKLIASTFGVSYEWLK 71 Query: 174 FG-------DEVIVPKSIKRAKGNQSSKKSK 197 G +++ + + I+R + K K Sbjct: 72 TGQGEMWGREKLSLEEIIEREQRKLLESKIK 102 >gi|257438372|ref|ZP_05614127.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199203|gb|EEU97487.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 119 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +++ RK TQ+++A + + E G + S L + +S D Sbjct: 8 KVLGEKVRKERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARILPVSLDA 67 Query: 90 IYD 92 + Sbjct: 68 LIT 70 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G +++ RK G++Q + + + ++N E+G P + I ++ L Sbjct: 6 DLKVLGEKVRKERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARILPVSL 65 Query: 170 DWIYF 174 D + Sbjct: 66 DALIT 70 >gi|238855030|ref|ZP_04645359.1| SOS-response transcriptional repressor [Lactobacillus jensenii 269-3] gi|282934070|ref|ZP_06339350.1| SOS-response transcriptional repressor [Lactobacillus jensenii 208-1] gi|238832401|gb|EEQ24709.1| SOS-response transcriptional repressor [Lactobacillus jensenii 269-3] gi|281301872|gb|EFA94136.1| SOS-response transcriptional repressor [Lactobacillus jensenii 208-1] Length = 225 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 32/88 (36%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + I+ ++ +K+ RK + +Q E+ + V+ +E+ S + + Sbjct: 1 MSISGAAEIASNNLAKALKEYRKKQHISQTELGEKLGVSKQTVSYWESKKKSPKMSAVIN 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNK 106 + N +S + G + + Sbjct: 61 ISNLIGVSVKELMFGTSDVAYSNEDLSM 88 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK RK + +SQ E G+ LG+ T+S +E + P++ I + + + FG Sbjct: 16 KALKEYRKKQHISQTELGEKLGVSKQTVSYWESKKKSPKMSAVINISNLIGVSVKELMFG 75 >gi|150016139|ref|YP_001308393.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902604|gb|ABR33437.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 184 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 36/94 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R +G+++K+IR + E A ++ + E G + ++ + + Sbjct: 1 MRNLNSIIGSKLKEIRNKRELSLDEAAKLTGVSKAMLGQIERGQSNPTVSTLWKISTGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +SF + D E + D N + +L Sbjct: 61 VSFSFFIDEEQDELEIVDQNNIDPIIEDDARMKL 94 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK IR + +S E KL G+ + L E+G++ P + KI K + ++ Sbjct: 12 LKEIRNKRELSLDEAAKLTGVSKAMLGQIERGQSNPTVSTLWKISTGLKVSFSFFIDEEQ 71 Query: 178 VIVP 181 + Sbjct: 72 DELE 75 >gi|326387341|ref|ZP_08208951.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] gi|326208522|gb|EGD59329.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] Length = 76 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +R+ TQ+++A + + ++ E G + ++ L +S Sbjct: 4 RKLVGRNFARLRRDRGLTQEQVAERSGFSQQYLSNLERGWRNPTVITLYELSLALGVSHV 63 Query: 89 WIYDGEVIDR 98 + ++ D Sbjct: 64 DLVRPDLEDP 73 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +R+D+G++Q + + G LSN E+G P + ++ + D Sbjct: 13 RLRRDRGLTQEQVAERSGFSQQYLSNLERGWRNPTVITLYELSLALGVSHVDLVRPD 69 >gi|315651586|ref|ZP_07904603.1| transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486145|gb|EFU76510.1| transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 75 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R A + +Q+++A +N E G + +IR L + + S D ++ E Sbjct: 7 RLKSARAAKDLSQQQLADMVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLDELFWDE 66 Query: 95 VIDRRYEDV 103 ++ + + Sbjct: 67 NTEKLPDTM 75 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLKS R K +SQ + ++G+ T++ E+G P I+ I K LD Sbjct: 1 MKMKNLRLKSARAAKDLSQQQLADMVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLD 60 Query: 171 WIYFGD 176 +++ + Sbjct: 61 ELFWDE 66 >gi|261350497|ref|ZP_05975914.1| toxin-antitoxin system, antitoxin component, Xre family [Methanobrevibacter smithii DSM 2374] gi|288861280|gb|EFC93578.1| toxin-antitoxin system, antitoxin component, Xre family [Methanobrevibacter smithii DSM 2374] Length = 108 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGT + +R+ N TQ++++ +S ++ ENG + ++ L Y S +++ Sbjct: 5 VGTTLNKLRRENGYTQEQVSNYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSPEYLL 64 Query: 92 ---DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 D K L+ A +K Sbjct: 65 GETDSHEKPSIAFRSDEKVDLNVVAKMNEIK 95 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L +R++ G +Q + LG+ S LS E G + K+ + +++ + Sbjct: 9 LNKLRRENGYTQEQVSNYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSPEYLLGETD 68 Query: 178 VIVPKSI 184 SI Sbjct: 69 SHEKPSI 75 >gi|222082024|ref|YP_002541389.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726703|gb|ACM29792.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 160 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 TP I + VG +++ IR +N +Q E+ + + +E+G S + N Sbjct: 27 TPSIHPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIAN 86 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 + Y+G +D Sbjct: 87 CLNVPISRFYEGLPQAGSELVNGGLPEID 115 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +L+ IR +SQ E G + + + YE G+ +I + Y G Sbjct: 39 QQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIANCLNVPISRFYEG 98 >gi|169544181|ref|YP_001692956.1| putative addiction system transcriptional regulator [Yersinia enterocolitica] gi|168218365|emb|CAP20108.1| putative addiction system transcriptional regulator [Yersinia enterocolitica] Length = 100 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 PF E L++ + + Q K + ++KD RKA + TQ+++A + ++ Sbjct: 10 PFSEAKALLLEDSSTLEAYNEIQIRKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRM 69 Query: 65 ENGMCSTSIRYALYLRNEYE 84 ENG ++ Sbjct: 70 ENGGSVPNLATLSRYAAALG 89 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + A+ +LK RK ++Q + + +G +S E G ++P + + Sbjct: 29 NEIQIRKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGGSVPNLATLSRYAAAL 88 Query: 166 K 166 Sbjct: 89 G 89 >gi|154500872|ref|ZP_02038910.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC 29799] gi|150270372|gb|EDM97698.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC 29799] Length = 157 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 35/92 (38%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G+ + RK + +Q+ +A ++ +E IR + L Y + Sbjct: 5 EENAMSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYNM 64 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + D + + + +++ + + + A Sbjct: 65 TLDELIEYDFDEQQAQQMIESVSEEAQARIDW 96 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G+ L RK G+SQ + LG+ T+S +E T+P+I+ ++ + + LD Sbjct: 9 MSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYNMTLDE 68 Query: 172 IYF--GDEVIVPKSIKRAKGNQSSK 194 + DE + I+ ++ Sbjct: 69 LIEYDFDEQQAQQMIESVSEEAQAR 93 >gi|153810982|ref|ZP_01963650.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174] gi|149832870|gb|EDM87953.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174] Length = 126 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 37/72 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R+ + +QK++A ++++N +ENG + S++ A + + +++ I+ Sbjct: 8 NKLAQLRQNAHLSQKQLAQKLGVSQASINYWENGQRTPSVKAAQKISDYFKMPISEIFSP 67 Query: 94 EVIDRRYEDVTN 105 + ++ N Sbjct: 68 YKEEINITNIVN 79 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 2/96 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +L +R++ +SQ + + LG+ ++++ +E G+ P +K A+KI K Sbjct: 1 MLYCKHPNKLAQLRQNAHLSQKQLAQKLGVSQASINYWENGQRTPSVKAAQKISDYFKMP 60 Query: 169 LDWIY--FGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + I+ + +E+ + + A+ +S+K+ D S Sbjct: 61 ISEIFSPYKEEINITNIVNAAEKFATSRKTNDDISS 96 >gi|38232718|ref|NP_938485.1| putative regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38198976|emb|CAE48592.1| Putative regulatory protein [Corynebacterium diphtheriae] Length = 99 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 TL ++ + + RI+ +R + ++ ++A + + E G S S+ AL Sbjct: 9 TLYCMSPKKKLERTIYNRIRVLRTERDMSRAQLAELVDVNPQTIGALERGDHSPSLDLAL 68 Query: 78 YLRNEYEISFDWIYDG 93 + + + + + I+ Sbjct: 69 RICDVFNLPIEAIFSR 84 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I R++ +R ++ MS+ + +L+ + T+ E+G P + A +I V ++ I+ Sbjct: 23 IYNRIRVLRTERDMSRAQLAELVDVNPQTIGALERGDHSPSLDLALRICDVFNLPIEAIF 82 >gi|294617175|ref|ZP_06696830.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1679] gi|291596575|gb|EFF27813.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1679] Length = 221 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I+ R+ TQKE+ + ++ +EN + L + + D Sbjct: 2 NIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPID 59 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++++ R++ ++Q E G+ +G+ + T+S++E RT+P+++ + +D+ Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 Query: 172 --IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I E I P N+ S SK+ Sbjct: 61 PSIESATESIEPTLPDEPLVNKKSYSSKQ 89 >gi|291300667|ref|YP_003511945.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569887|gb|ADD42852.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 513 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +GT I+D RK TQ ++A +SAVN E G + S+ + + Sbjct: 8 TEDILRRIGTLIRDARKHRGLTQTQLADLLGTSQSAVNRIERGAQNLSVDMLNRVSEALD 67 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ RK +G++Q + LLG S ++ E+G + ++ + Sbjct: 19 IRDARKHRGLTQTQLADLLGTSQSAVNRIERGAQNLSVDMLNRVSEALD 67 >gi|227485487|ref|ZP_03915803.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236486|gb|EEI86501.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 70 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + D RK Q E+ ++L E G + S+ AL + + + I Sbjct: 2 ELRNNLADFRKKAGYNQAELGGLVGVSRQTISLIERGDYNPSVTVALTIAKVLGVDINEI 61 Query: 91 YDGEVIDRR 99 + E D + Sbjct: 62 FRLEETDEK 70 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L RK G +Q E G L+G+ T+S E+G P + A I +V ++ Sbjct: 1 MELRNNLADFRKKAGYNQAELGGLVGVSRQTISLIERGDYNPSVTVALTIAKVLGVDINE 60 Query: 172 IYFGDEVIVP 181 I+ +E Sbjct: 61 IFRLEETDEK 70 >gi|221635639|ref|YP_002523515.1| transcriptional Regulator of molybdate metabolism, XRE family [Thermomicrobium roseum DSM 5159] gi|221157546|gb|ACM06664.1| transcriptional Regulator of molybdate metabolism, XRE family [Thermomicrobium roseum DSM 5159] Length = 506 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 35/83 (42%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 + S + T++ + + R+++ R++ +Q+++A A + E G Sbjct: 118 SLTGSRRSLTILEKALGVRMETQLIVRVRERRRSCGLSQQQLAERAGISRQTLVAIEAGR 177 Query: 69 CSTSIRYALYLRNEYEISFDWIY 91 + S+ AL L + + ++ Sbjct: 178 LTPSVAVALRLARALGCAVEELF 200 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ R+ G+SQ + + G+ TL E GR P + A ++ + ++ ++ E Sbjct: 145 VRERRRSCGLSQQQLAERAGISRQTLVAIEAGRLTPSVAVALRLARALGCAVEELFSFAE 204 Query: 178 VIV 180 + Sbjct: 205 PPL 207 >gi|206601889|gb|EDZ38371.1| Putative transcriptional regulator, XRE family [Leptospirillum sp. Group II '5-way CG'] Length = 121 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R N +Q A + ++ FE+G S+ + L ++++ DW+ Sbjct: 16 LGARIRHLRG--NMSQTAFAELLGIRQEEISRFESGSRVPSVELLVRLSGIHKVTLDWLV 73 Query: 92 DG 93 G Sbjct: 74 MG 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 DP +GAR++ +R MSQ F +LLG+ +S +E G +P ++ ++ + K L Sbjct: 12 DPLGLGARIRHLRG--NMSQTAFAELLGIRQEEISRFESGSRVPSVELLVRLSGIHKVTL 69 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 DW+ G S++ +K D+ Sbjct: 70 DWLVMGGTSGGEGSVREEDTPLPQEKKLLDR 100 >gi|182683999|ref|YP_001835746.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|182629333|gb|ACB90281.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] Length = 177 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 21 IGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 75 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 37/75 (49%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 K + IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q Sbjct: 14 KIKEFAMIGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFN 73 Query: 167 KHLDWIYFGDEVIVP 181 I ++++ P Sbjct: 74 VSYVDIVGENKMLNP 88 >gi|29377033|ref|NP_816187.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344499|gb|AAO82257.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 126 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 1/105 (0%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +R Q E+A + +S+++ +EN + + + + +S +++ D Sbjct: 5 DKLKQLRTKKGIKQSELAEILHLRQSSISDYENNRSTPNPETIKKIAEYFNVSANYLLDI 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + D T K+ ++ L G E +LL + Sbjct: 65 PDKNDTKLDSTIKETIEELKNEDTL-LFMGKNGDIDEETARLLKI 108 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK +R KG+ Q E ++L + S++S+YE R+ P + +KI + ++ Sbjct: 1 MAFSDKLKQLRTKKGIKQSELAEILHLRQSSISDYENNRSTPNPETIKKIAEYFNVSANY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + K K K++ Sbjct: 61 LLDIPDKNDTKLDSTIKETIEELKNED 87 >gi|311278398|ref|YP_003940629.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308747593|gb|ADO47345.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 83 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI+ +R +Q+ A + ++ E G+ + ++ + + E+ Sbjct: 9 KILGERIRTLRLDMGLSQEAFADKCGIDRTYMSGIERGVRNPTLIVICAISDGLEMDLSH 68 Query: 90 IY 91 ++ Sbjct: 69 LF 70 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R D G+SQ F G+ + +S E+G P + I + L ++ Sbjct: 13 ERIRTLRLDMGLSQEAFADKCGIDRTYMSGIERGVRNPTLIVICAISDGLEMDLSHLFMF 72 Query: 176 DE 177 + Sbjct: 73 AD 74 >gi|291564063|emb|CBL42879.1| Predicted transcription factor, homolog of eukaryotic MBF1 [butyrate-producing bacterium SS3/4] Length = 120 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 37/94 (39%), Gaps = 5/94 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ ++RK+ +Q+E+ ++ +E+ + + L + + ++ D + Sbjct: 2 NFNEKLINLRKSKGLSQEELGNELKVSRQTISKWESCQSYPDFQRLVLLSDYFGLTLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRL-----DPYAIGARLK 119 + E N ++L D + ++ Sbjct: 62 VRDIDVQEVREKNLNNEKLSSIYSDMNEAKSFIR 95 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L ++RK KG+SQ E G L + T+S +E ++ P+ + + LD Sbjct: 1 MNFNEKLINLRKSKGLSQEELGNELKVSRQTISKWESCQSYPDFQRLVLLSDYFGLTLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + +V + SS S ++ S Sbjct: 61 LVRDIDVQEVREKNLNNEKLSSIYSDMNEAKS 92 >gi|154505077|ref|ZP_02041815.1| hypothetical protein RUMGNA_02587 [Ruminococcus gnavus ATCC 29149] gi|153794556|gb|EDN76976.1| hypothetical protein RUMGNA_02587 [Ruminococcus gnavus ATCC 29149] Length = 209 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R+K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + ++ A+G L+ + Sbjct: 64 VSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 99 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 12 SRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 70 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 71 GETDEYETDITDKRE 85 >gi|288929417|ref|ZP_06423262.1| DNA-binding protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329519|gb|EFC68105.1| DNA-binding protein [Prevotella sp. oral taxon 317 str. F0108] Length = 184 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 33/86 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ + E L G+ E G P + KI + LD + FG Sbjct: 10 QRLKGLREVLNIPAEEIADLCGISLEHYLKMEDGTADPSVYRLAKISKRYGIDLDVLLFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + KGN S + D K Sbjct: 70 EEPRMSAYYLTRKGNGLSVERGNDYK 95 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +G R+K +R+ N +E+A E+G S+ + Y Sbjct: 1 MEESIRTIGQRLKGLREVLNIPAEEIADLCGISLEHYLKMEDGTADPSVYRLAKISKRYG 60 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 I D + GE +T Sbjct: 61 IDLDVLLFGEEPRMSAYYLT 80 >gi|148378345|ref|YP_001252886.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|168184831|ref|ZP_02619495.1| DNA-binding protein [Clostridium botulinum Bf] gi|237793662|ref|YP_002861214.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|148287829|emb|CAL81895.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|182672129|gb|EDT84090.1| DNA-binding protein [Clostridium botulinum Bf] gi|229261583|gb|ACQ52616.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 181 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I+++RK N T K+++ S ++ EN S +I + + + + Sbjct: 4 EIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYF 63 Query: 91 YD 92 + Sbjct: 64 FK 65 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +++++RK+K ++ + + G+ S LS E + I +KI + + Sbjct: 3 NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITY 62 Query: 172 IYFGDE 177 + E Sbjct: 63 FFKSPE 68 >gi|157325325|ref|YP_001468745.1| gp41 [Listeria phage B054] gi|300765822|ref|ZP_07075796.1| hypothetical protein LMHG_12475 [Listeria monocytogenes FSL N1-017] gi|66733330|gb|AAY53146.1| gp41 [Listeria phage B054] gi|300513399|gb|EFK40472.1| hypothetical protein LMHG_12475 [Listeria monocytogenes FSL N1-017] Length = 142 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +RIK++RK + KTQ+EMA ++ +E + N +++S D+++ Sbjct: 2 FASRIKELRKESKKTQEEMAKILGVAKTTYASYEQAKRMPDAEIQNKIANYFDVSLDYLH 61 Query: 92 -DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + E T K+ +D L+ Sbjct: 62 GRSRHKNINAEGFTPKEEIDMKKRMDALRE 91 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +R+K +RK+ +Q E K+LG+ +T ++YEQ + +P+ + KI LD++ Sbjct: 1 MFASRIKELRKESKKTQEEMAKILGVAKTTYASYEQAKRMPDAEIQNKIANYFDVSLDYL 60 >gi|311747920|ref|ZP_07721705.1| putative transcriptional regulator [Algoriphagus sp. PR1] gi|126575914|gb|EAZ80224.1| putative transcriptional regulator [Algoriphagus sp. PR1] Length = 192 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +IK +RK + T +++A A + ++ ENG S+ + + E+ Sbjct: 4 EVVAQISNKIKSVRKEKSLTLQDIADRAGVTKGLISQIENGRTIPSLLVLIEIIQALEVD 63 Query: 87 FDWIYD 92 FD + Sbjct: 64 FDSFFT 69 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++KS+RK+K ++ + G+ +S E GRTIP + +I Q + D + Sbjct: 11 NKIKSVRKEKSLTLQDIADRAGVTKGLISQIENGRTIPSLLVLIEIIQALEVDFDSFFTE 70 Query: 176 -DEVIVPKSIKRAKGNQSSKKSKKD 199 + + + N+ K K+D Sbjct: 71 LSKFSSGTKVFVQRKNEYQKFEKED 95 >gi|161598530|ref|YP_001573911.1| hypothetical protein pEDINA_p39 [Staphylococcus aureus] gi|27531763|dbj|BAC54531.1| unnamed protein product [Staphylococcus aureus] gi|282166102|gb|ADA80122.1| hypothetical protein SAP099B_021 [Staphylococcus aureus] Length = 64 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK+ R+ +Q+E+A +V+ +E+ S+ + + + + I+ D + Sbjct: 2 KLAEDIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHL 61 Query: 91 YDG 93 G Sbjct: 62 IKG 64 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R+ KG SQ E +L + ++S +E + P + + + LD Sbjct: 1 MKLAEDIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDH 60 Query: 172 IYFG 175 + G Sbjct: 61 LIKG 64 >gi|152984498|ref|YP_001346411.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150959656|gb|ABR81681.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 68 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R + +Q ++A VN E G S+ A + ++ + I+D Sbjct: 3 NRVRELRAEHGWSQADLAAKLEVSRQTVNAIETGRYDPSLPLAFRFARVFGLAIEAIFDD 62 Query: 94 EVI 96 Sbjct: 63 REQ 65 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R + G SQ + L + T++ E GR P + A + +V ++ I+ Sbjct: 1 MRNRVRELRAEHGWSQADLAAKLEVSRQTVNAIETGRYDPSLPLAFRFARVFGLAIEAIF 60 Query: 174 FGDE 177 E Sbjct: 61 DDRE 64 >gi|269838045|ref|YP_003320273.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787308|gb|ACZ39451.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 131 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P + + +G I+ +R+ + ++A S ++ E G S L N Sbjct: 9 RPTSSEVRQRIGPAIRRLRQQQGLSLSDLAERTGISVSYLSRLEKGRSVPSFTLLSRLGN 68 Query: 82 EYEISFDWIYDGE 94 E + + + E Sbjct: 69 ELGVDIGFFVETE 81 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +R+ +G+S + + G+ S LS E+GR++P ++ + +F + Sbjct: 23 IRRLRQQQGLSLSDLAERTGISVSYLSRLEKGRSVPSFTLLSRLGNELGVDIG--FFVET 80 Query: 178 VIVPKSIKRAKGNQSSKKS 196 + + RA + SK S Sbjct: 81 EREAQDVDRALEEELSKTS 99 >gi|160893910|ref|ZP_02074689.1| hypothetical protein CLOL250_01465 [Clostridium sp. L2-50] gi|156864288|gb|EDO57719.1| hypothetical protein CLOL250_01465 [Clostridium sp. L2-50] Length = 91 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +VG RI+DIR N T ++ + V+ E G+ SI + + E+ S D Sbjct: 2 MMEVGQRIQDIRIENEVTGAQLGACLGINGNQVSRIETGVARCSIYQLVLICQEFGCSAD 61 Query: 89 WIYDGEVI 96 ++ G+ Sbjct: 62 YLLFGKKN 69 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R++ IR + ++ + G LG+ + +S E G I I Q D Sbjct: 2 MMEVGQRIQDIRIENEVTGAQLGACLGINGNQVSRIETGVARCSIYQLVLICQEFGCSAD 61 Query: 171 WIYFGDE 177 ++ FG + Sbjct: 62 YLLFGKK 68 >gi|219849656|ref|YP_002464089.1| helix-turn-helix domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219543915|gb|ACL25653.1| helix-turn-helix domain protein [Chloroflexus aggregans DSM 9485] Length = 393 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN--QLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + R++ +R A T ++A N A++ +E+G S L + Sbjct: 2 INQRLRQLRLARGMTLDDLAQATNRIVTRQAISKYEHGQAQPSPIVLQRLAQALGVRPTD 61 Query: 90 IYD 92 + D Sbjct: 62 LLD 64 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 2/84 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RL+ +R +GM+ + + + +S YE G+ P +++ Q Sbjct: 1 MINQRLRQLRLARGMTLDDLAQATNRIVTRQAISKYEHGQAQPSPIVLQRLAQALGVRPT 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSK 194 + + R + S + Sbjct: 61 DLLDSTNTQIELIAYRKRATLSKR 84 >gi|91780754|ref|YP_555961.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91693414|gb|ABE36611.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 204 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R++ +R A + E+A+ A V+ E + S+R LR E+ + Sbjct: 18 DVGARLRALRVAQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALEVPLTAL 77 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + ++ Sbjct: 78 LEEDDAVSDPITGDFVRK 95 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ARL+++R +G+S E G+ T+S E+ + P ++ +++Q + L + Sbjct: 21 ARLRALRVAQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALEVPLTALLEE 80 Query: 176 DEVIVP 181 D+ + Sbjct: 81 DDAVSD 86 >gi|328885857|emb|CCA59096.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces venezuelae ATCC 10712] Length = 509 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGKLIRDARQHRGWTQTQLADALATSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G +Q + L S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWTQTQLADALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|228969787|ref|ZP_04130551.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228789939|gb|EEM37757.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 184 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 15/177 (8%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +VG +IK RKA T K +A A+ S ++ E G+ + S++ + +I Sbjct: 2 HNINVGQKIKAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALKIPI 61 Query: 88 -DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 ++ + + ++++ G + +E L+ + T S+ Sbjct: 62 FNFFLEDINTEELVVRANKRRKITFPESGNVSYELLSPNLDGSMELA-LMNLLPQTASSI 120 Query: 147 EQGRTIPEIKPARKIKQVT--KKHL---DWIY---FGDEVIVPKSIKRAKGNQSSKK 195 + P +I + L D + GD V +P K N SS K Sbjct: 121 D-----PVAHIGEEIAFILEGHVKLYLNDEVLLLNTGDSVKIPSYAKHKWENNSSNK 172 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G ++K+ RK G++ +L + S LS E+G T P ++ + I K Sbjct: 1 MHNINVGQKIKAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALKIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 + + D ++ K + Sbjct: 61 IFNFFLEDINTEELVVRANKRRK 83 >gi|281420953|ref|ZP_06251952.1| DNA-binding protein [Prevotella copri DSM 18205] gi|281404871|gb|EFB35551.1| DNA-binding protein [Prevotella copri DSM 18205] Length = 184 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R+K +R+ N +E+A E+G S+ + Y Sbjct: 1 MDEAIKQIGERLKGLREVLNIPAEEIAELCEISLDHYLKIESGEADPSVYRLSKISKRYG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 I D + GE + VT K + + K Sbjct: 61 IDLDVLLFGEEPRMKGYYVTRKGQGPEIDRNNQYK 95 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 29/86 (33%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ + E +L + E G P + KI + LD + FG Sbjct: 10 ERLKGLREVLNIPAEEIAELCEISLDHYLKIESGEADPSVYRLSKISKRYGIDLDVLLFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + KG K Sbjct: 70 EEPRMKGYYVTRKGQGPEIDRNNQYK 95 >gi|15673253|ref|NP_267427.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724246|gb|AAK05369.1|AE006359_7 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406810|gb|ADZ63881.1| transcriptional repressor [Lactococcus lactis subsp. lactis CV56] Length = 252 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 35/88 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +K +RK TQ ++A ++A L+E + ++ L + Y++ + Sbjct: 2 NFGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLEILEKLADIYDLPIQEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + N + L + + Sbjct: 62 IKETDNNAEKQLIDNYRSLTGEQQESVI 89 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G LK +RK+ ++Q + + LGM + +EQ T P ++ K+ + + Sbjct: 1 MNFGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLEILEKLADIYDLPIQE 60 Query: 172 IYFGDEVIVPKSI 184 + + K + Sbjct: 61 LIKETDNNAEKQL 73 >gi|15963850|ref|NP_384203.1| hypothetical protein SMc02620 [Sinorhizobium meliloti 1021] gi|307309551|ref|ZP_07589206.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307320383|ref|ZP_07599800.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15073025|emb|CAC41484.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] gi|306893949|gb|EFN24718.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306900011|gb|EFN30632.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 243 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 32/102 (31%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 + Q+ I + +G ++ RK T ++A + ++ ENG Sbjct: 33 ARVTLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKIENGN 92 Query: 69 CSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 S S+ L + + + V + +D Sbjct: 93 TSPSLTTLQTLSRALGVPITAFFRRFEEEHSAVFVKAGEGVD 134 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 1/117 (0%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + + + ++++ AIG +++ RK G++ + + LS E Sbjct: 31 ELARVTLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKIEN 90 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 G T P + + + + + + +E +K +G ++ + N Sbjct: 91 GNTSPSLTTLQTLSRALGVPITAFFRRFEEEHSAVFVKAGEGVDVERRGTRAGHQYN 147 >gi|257867362|ref|ZP_05647015.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257873693|ref|ZP_05653346.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] gi|257801418|gb|EEV30348.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257807857|gb|EEV36679.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] Length = 180 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 32/81 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 2 EIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + E + L Sbjct: 62 FREENAQHQVVYREEDSTLYY 82 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 1 MEIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEE 60 Query: 172 IYFGD 176 + + Sbjct: 61 FFREE 65 >gi|229827273|ref|ZP_04453342.1| hypothetical protein GCWU000182_02659 [Abiotrophia defectiva ATCC 49176] gi|229788891|gb|EEP25005.1| hypothetical protein GCWU000182_02659 [Abiotrophia defectiva ATCC 49176] Length = 115 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 4/102 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI+ +R + TQ +++ + +S + E G + + L + + D++ Sbjct: 8 EIGKRIRSLRYESKLTQTKLSEYLSLDQSMIAKIEKGERNITSDVIEKLSALFCCTVDYL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 GE + LK++ + +F Sbjct: 68 LFGENQE----QKCTVSFRTNNLTSDDLKALAIINKIVLNQF 105 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 40/92 (43%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ IG R++S+R + ++Q + + L + S ++ E+G K+ + Sbjct: 1 MDMMNLVEIGKRIRSLRYESKLTQTKLSEYLSLDQSMIAKIEKGERNITSDVIEKLSALF 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 +D++ FG+ ++ N +S K Sbjct: 61 CCTVDYLLFGENQEQKCTVSFRTNNLTSDDLK 92 >gi|228963422|ref|ZP_04124583.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228796316|gb|EEM43763.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 115 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K +R T KE++ +S + +E L + + + D+I Sbjct: 2 NIGERLKYLRNKQKWTMKEISSKLGIGDSTYSGYETNYRKPDAEMICKLADLHNTTTDYI 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 + ++ + Sbjct: 62 LCKTDDPTLEKATSSNIK 79 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 2/93 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK +R + + E LG+ +ST S YE P+ + K+ + D+ Sbjct: 1 MNIGERLKYLRNKQKWTMKEISSKLGIGDSTYSGYETNYRKPDAEMICKLADLHNTTTDY 60 Query: 172 IY--FGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 I D + + K ++K D K Sbjct: 61 ILCKTDDPTLEKATSSNIKDFFDNQKLHWDGKK 93 >gi|183600843|ref|ZP_02962336.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC 25827] gi|188019628|gb|EDU57668.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC 25827] Length = 234 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K RK TQ E+A ++A+ E G +TS R + + + +W+ Sbjct: 5 LAQRLKQARKNAGITQNELAKLVGVSQAAIQKIETGKAATSTR-LIEISKALNVDPEWLS 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G D +++ +++ ++ R Sbjct: 64 VGTG-DNPVPHISSSVKIELADDVGNIERYR 93 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK RK+ G++Q E KL+G+ + + E G+ + +I + +W+ Sbjct: 7 QRLKQARKNAGITQNELAKLVGVSQAAIQKIETGKAATSTR-LIEISKALNVDPEWL 62 >gi|167841812|ref|ZP_02468496.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia thailandensis MSMB43] Length = 191 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ + + T E A A + ++ E G SI + + ++ + Sbjct: 15 LGNKIRALWQRLKLTLDETATTAGISKPFLSQVERGRARPSITSLVRIAKALGVTMQYFI 74 Query: 92 D 92 D Sbjct: 75 D 75 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++++ + ++ E G+ LS E+GR P I +I + + + Sbjct: 17 NKIRALWQRLKLTLDETATTAGISKPFLSQVERGRARPSITSLVRIAKALGVTMQYFI 74 >gi|206974526|ref|ZP_03235442.1| transcriptional regulator AnsR [Bacillus cereus H3081.97] gi|217960545|ref|YP_002339109.1| transcriptional regulator AnsR [Bacillus cereus AH187] gi|222096605|ref|YP_002530662.1| ans operon repressor protein [Bacillus cereus Q1] gi|206747169|gb|EDZ58560.1| transcriptional regulator AnsR [Bacillus cereus H3081.97] gi|217065208|gb|ACJ79458.1| transcriptional regulator AnsR [Bacillus cereus AH187] gi|221240663|gb|ACM13373.1| ans operon repressor protein [Bacillus cereus Q1] Length = 125 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|114569052|ref|YP_755732.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339514|gb|ABI64794.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 68 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++++R +Q+ +A + VN E G S+ A L + + I+D Sbjct: 3 NQLRELRGEKGWSQQALADHLDVSRQTVNALETGKYDPSLPLAFKLARLFGEPIESIFDD 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +L+ +R +KG SQ L + T++ E G+ P + A K+ ++ + ++ I+ Sbjct: 1 MKNQLRELRGEKGWSQQALADHLDVSRQTVNALETGKYDPSLPLAFKLARLFGEPIESIF 60 Query: 174 FGD 176 + Sbjct: 61 DDE 63 >gi|94495587|ref|ZP_01302167.1| hypothetical protein SKA58_06045 [Sphingomonas sp. SKA58] gi|94424975|gb|EAT09996.1| hypothetical protein SKA58_06045 [Sphingomonas sp. SKA58] Length = 470 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G +++ +R+ +Q +MA S +N E + + L L N Y+I Sbjct: 11 LGPKLRVLRRELGLSQTQMAEELGVSPSYLNHLERNQRPLTAQMMLRLANTYDIDI 66 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ +R++ G+SQ + + LG+ S L++ E+ + + ++ + Sbjct: 15 LRVLRRELGLSQTQMAEELGVSPSYLNHLERNQRPLTAQMMLRLANTYDIDI 66 >gi|42784215|ref|NP_981462.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42740146|gb|AAS44070.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 79 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 30/67 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFN 61 Query: 85 ISFDWIY 91 + + I+ Sbjct: 62 VPVEEIF 68 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI Q+ Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIF 60 Query: 166 KKHLDWIY 173 ++ I+ Sbjct: 61 NVPVEEIF 68 >gi|49473876|ref|YP_031918.1| transcriptional regulator [Bartonella quintana str. Toulouse] gi|49239379|emb|CAF25712.1| Transcriptional regulator [Bartonella quintana str. Toulouse] Length = 137 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 2/99 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTRI+ R TQ+++ + +E G + ++ + + Sbjct: 15 VGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQAIAEIMDVPVSYFF 74 Query: 92 DGEVIDRR--YEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + + ++ +D + ++ +R +S Sbjct: 75 DKGIDSQHVEGFAESDNSFMDFCSSSEGIQLMRAFTNIS 113 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 E N +D Y ++ R G++Q + G+ LG+ + YE+G + Sbjct: 3 ETKKNPDPIDIYVGTR-IRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQA 61 Query: 161 IKQVTKKHLDWIY 173 I ++ + + + Sbjct: 62 IAEIMDVPVSYFF 74 >gi|75760140|ref|ZP_00740200.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903528|ref|ZP_04067651.1| hypothetical protein bthur0014_46880 [Bacillus thuringiensis IBL 4222] gi|228910865|ref|ZP_04074674.1| hypothetical protein bthur0013_50070 [Bacillus thuringiensis IBL 200] gi|228968140|ref|ZP_04129144.1| hypothetical protein bthur0004_49240 [Bacillus thuringiensis serovar sotto str. T04001] gi|74492377|gb|EAO55533.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228791575|gb|EEM39173.1| hypothetical protein bthur0004_49240 [Bacillus thuringiensis serovar sotto str. T04001] gi|228848816|gb|EEM93661.1| hypothetical protein bthur0013_50070 [Bacillus thuringiensis IBL 200] gi|228856104|gb|EEN00641.1| hypothetical protein bthur0014_46880 [Bacillus thuringiensis IBL 4222] Length = 79 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 31/68 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFN 61 Query: 85 ISFDWIYD 92 +S + I+ Sbjct: 62 VSVEEIFT 69 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI Q+ Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIF 60 Query: 166 KKHLDWIYF---GDEVIVP 181 ++ I+ G+E Sbjct: 61 NVSVEEIFTLVEGEEDDEE 79 >gi|327405730|ref|YP_004346568.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321238|gb|AEA45730.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 298 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 30/87 (34%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI D RK +Q +++ AV +E G I L ++ ++ Sbjct: 5 KIIGQRIADARKKTTISQAQLSERLFISPQAVGKWERGESMPDIITLNRLSEILDVDLNY 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGA 116 DG E ++ + Sbjct: 65 FSDGFTSAVSEEKKSSNSLQELLEKPK 91 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L IG R+ RK +SQ + + L + + +E+G ++P+I ++ ++ Sbjct: 1 MLSTKIIGQRIADARKKTTISQAQLSERLFISPQAVGKWERGESMPDIITLNRLSEILDV 60 Query: 168 HLDWIYFGDEVIVPKSIKRAKG-NQSSKKSKKDKKSSN 204 L++ G V + K + + +K KK +K N Sbjct: 61 DLNYFSDGFTSAVSEEKKSSNSLQELLEKPKKSEKKLN 98 >gi|289434068|ref|YP_003463940.1| transcriptional regulator, Cro/CI family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170312|emb|CBH26852.1| transcriptional regulator, Cro/CI family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313638856|gb|EFS03917.1| DNA-binding protein [Listeria seeligeri FSL S4-171] Length = 180 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|269468586|gb|EEZ80235.1| hypothetical protein Sup05_0706 [uncultured SUP05 cluster bacterium] Length = 131 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG---MCSTSIRYALYLRNEYEI 85 K + RIK R+ +QKE+A SA++ +E+ S++ + L + Sbjct: 1 MKSIAIRIKQSRELKGLSQKELADKIGVSSSAISQYESTSYFHSEPSVKNLIKLTKVLNV 60 Query: 86 SFDWIYDGEVIDRRYEDVTNKKR 108 SF+W+ G I + + N+K Sbjct: 61 SFEWLATGRGIREIEDFLLNEKN 83 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ---GRTIPEIKPARKIKQVTKK 167 +I R+K R+ KG+SQ E +G+ +S +S YE + P +K K+ +V Sbjct: 1 MKSIAIRIKQSRELKGLSQKELADKIGVSSSAISQYESTSYFHSEPSVKNLIKLTKVLNV 60 Query: 168 HLDWIYFG 175 +W+ G Sbjct: 61 SFEWLATG 68 >gi|322418045|ref|YP_004197268.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320124432|gb|ADW11992.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +G RI+++RKA + +Q+ +A ++ E G + S+ + + Sbjct: 1 MQTAKELLGMRIREVRKARHLSQERLAEKVGVEPKQISRIEGGKSAPSLDTLEAIAKHLQ 60 Query: 85 ISFDWIYD 92 + + D Sbjct: 61 VQMKDLLD 68 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 31/68 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK + +SQ + +G+ +S E G++ P + I + + + + Sbjct: 10 MRIREVRKARHLSQERLAEKVGVEPKQISRIEGGKSAPSLDTLEAIAKHLQVQMKDLLDF 69 Query: 176 DEVIVPKS 183 ++ ++ Sbjct: 70 QHLVPEET 77 >gi|254784460|ref|YP_003071888.1| DNA-binding protein [Teredinibacter turnerae T7901] gi|237686654|gb|ACR13918.1| DNA-binding protein [Teredinibacter turnerae T7901] Length = 185 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 29/68 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ +++ ++ +R TQ++MA A E+G + ++ L N Sbjct: 2 KLETLARNLAGNVRQLRSERGFTQQQMATLAQIPRPTWASIESGAANPTLSVLSKLANAL 61 Query: 84 EISFDWIY 91 ++S + + Sbjct: 62 QVSIEELV 69 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R ++G +Q + L +P T ++ E G P + K+ + ++ + Sbjct: 13 NVRQLRSERGFTQQQMATLAQIPRPTWASIESGAANPTLSVLSKLANALQVSIEELV 69 >gi|228987486|ref|ZP_04147605.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772218|gb|EEM20665.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 115 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 8/114 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG IK +RK+ + TQ++++ + +E + L + + S D + Sbjct: 5 VGQNIKRLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASYFNTSTDALL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 + E + ++ + G Q F K + + L N Sbjct: 65 NFENKKEDALLELLFNDIQ--------RAYEELDGRQQGRFAKQVSLYVKMLQN 110 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 28/70 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +RK ++Q + + G+ + N+E R P+++ + + D + Sbjct: 7 QNIKRLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASYFNTSTDALLNF 66 Query: 176 DEVIVPKSIK 185 + ++ Sbjct: 67 ENKKEDALLE 76 >gi|167628808|ref|YP_001679307.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] gi|167591548|gb|ABZ83296.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] Length = 119 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 8/96 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI--RYALYLRNEYEISFDW 89 +G RIK +RK TQ ++A N ++ +E G + +I L + E + D+ Sbjct: 4 IGNRIKHLRKQRGLTQPQLAKLLNVSPQVISNWERG-YTPTIAPESIDKLASILETTSDF 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + +K + +K +R+ Sbjct: 63 LLGRSTASISSSLEALEK-----SWPEGIKVLRRAN 93 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI--KPARKIKQVTKKHLDWIY 173 R+K +RK +G++Q + KLL + +SN+E+ P I + K+ + + D++ Sbjct: 6 NRIKHLRKQRGLTQPQLAKLLNVSPQVISNWER-GYTPTIAPESIDKLASILETTSDFLL 64 Query: 174 FGDEVIVPKSIKRAKGNQSS 193 + S++ + + Sbjct: 65 GRSTASISSSLEALEKSWPE 84 >gi|38232985|ref|NP_938752.1| putative regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38199243|emb|CAE48874.1| Putative regulatory protein [Corynebacterium diphtheriae] Length = 474 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 2/87 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +RK + TQ +A S +N E+ + + + + + + D + Sbjct: 6 VGSRLRQLRKERDLTQAALAELLGISASYINQIEHDVRPLTPQVLRKITASFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 R + D + Sbjct: 64 FSRDDSSRLIAELHDVMFDKEVCPQPI 90 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +RK++ ++Q +LLG+ S ++ E + RKI Sbjct: 1 MGMTYVGSRLRQLRKERDLTQAALAELLGISASYINQIEHDVRPLTPQVLRKITASFGVD 60 Query: 169 LDWIYFGD 176 + D Sbjct: 61 ATFFSRDD 68 >gi|326385716|ref|ZP_08207345.1| hypothetical protein Y88_2773 [Novosphingobium nitrogenifigens DSM 19370] gi|326209695|gb|EGD60483.1| hypothetical protein Y88_2773 [Novosphingobium nitrogenifigens DSM 19370] Length = 135 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI ++R+ +Q ++A + + +E G L ++ +S W+ Sbjct: 8 IGTRIAEVRRLKGLSQVQLAEELGISKPGLANYERGFRVPPASLVADLCEKHGVSAGWLL 67 Query: 92 DGEVIDRRYEDVTNKKR 108 GE + +R Sbjct: 68 LGEGAIFTPDLGQVHQR 84 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + +R+ KG+SQ++ + LG+ L+NYE+G +P + + W+ G+ Sbjct: 12 IAEVRRLKGLSQVQLAEELGISKPGLANYERGFRVPPASLVADLCEKHGVSAGWLLLGE 70 >gi|315302119|ref|ZP_07873074.1| DNA-binding protein [Listeria ivanovii FSL F6-596] gi|313629507|gb|EFR97685.1| DNA-binding protein [Listeria ivanovii FSL F6-596] Length = 180 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|298292090|ref|YP_003694029.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296928601|gb|ADH89410.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 206 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RKA N + E++ + +S ++ E + ++ L ++S D Sbjct: 23 QLGRTIQRLRKAYNLSLSELSEQSGVAKSIISQIERNETNPTLATVWRLSQALDVSIDRF 82 Query: 91 YDGEVIDRR 99 + Sbjct: 83 MAATDDEPF 91 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 2/97 (2%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 G D+ + +G ++ +RK +S E + G+ S +S E+ Sbjct: 1 MSGRTRSLDRGDMDAGAQAITGQLGRTIQRLRKAYNLSLSELSEQSGVAKSIISQIERNE 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIY--FGDEVIVPKSIK 185 T P + ++ Q +D DE V + Sbjct: 61 TNPTLATVWRLSQALDVSIDRFMAATDDEPFVEHLTR 97 >gi|237730277|ref|ZP_04560758.1| DNA-binding transcriptional repressor PuuR [Citrobacter sp. 30_2] gi|226905816|gb|EEH91734.1| DNA-binding transcriptional repressor PuuR [Citrobacter sp. 30_2] Length = 185 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDL 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 4 DGLAPGKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 Query: 170 DWIYFGDEVIVPKSI 184 + E + Sbjct: 64 SEFFAEPEKPDEPQV 78 >gi|199597287|ref|ZP_03210718.1| Predicted transcriptional regulator [Lactobacillus rhamnosus HN001] gi|229551796|ref|ZP_04440521.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258507943|ref|YP_003170694.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|258539196|ref|YP_003173695.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|199591803|gb|EDY99878.1| Predicted transcriptional regulator [Lactobacillus rhamnosus HN001] gi|229314850|gb|EEN80823.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257147870|emb|CAR86843.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|257150872|emb|CAR89844.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|259649270|dbj|BAI41432.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 62 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +I+ +R + TQ+E+A N +N EN ++ A L + + + D ++ Sbjct: 3 NKIRTLRTQQHLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALARQLQTTVDHLFQ 61 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +++++R + ++Q E + + T++ E + P + A + + + +D ++ Sbjct: 1 MENKIRTLRTQQHLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALARQLQTTVDHLF 60 >gi|183597291|ref|ZP_02958784.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827] gi|188023308|gb|EDU61348.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827] Length = 185 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 36/86 (41%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ +G +++ +R+A N + E+A + ++A++ E+G + + + Sbjct: 3 KKINIKIGQKVRLLRQARNLSLNELARLSGISKAALSKLESGDSNPRVDTLEAIAIALRF 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDP 111 ++ + Y + ++ D Sbjct: 63 PLSDLFTLQHEAYPYFVKSAPQQGDY 88 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +++ +R+ + +S E +L G+ + LS E G + P + I + L Sbjct: 6 NIKIGQKVRLLRQARNLSLNELARLSGISKAALSKLESGDSNPRVDTLEAIAIALRFPLS 65 Query: 171 WIYFGDEVIVPKSIKRA 187 ++ P +K A Sbjct: 66 DLFTLQHEAYPYFVKSA 82 >gi|146308997|ref|YP_001189462.1| putative phage repressor [Pseudomonas mendocina ymp] gi|145577198|gb|ABP86730.1| putative phage repressor [Pseudomonas mendocina ymp] Length = 240 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G R+K +RKA +Q+ +A +S + +E + + S+ L + +S Sbjct: 1 METLGQRLKRLRKAKGMSQQALAEECGWASQSRIGNYEADLRAPSLSDLLLIAPALGVSL 60 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 + + Y K Sbjct: 61 AELAGSDEWTGAYGVQVQVKN 81 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 1/82 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +RK KGMSQ + G S + NYE P + I L + Sbjct: 6 QRLKRLRKAKGMSQQALAEECGWASQSRIGNYEADLRAPSLSDLLLIAPALGVSLAELAG 65 Query: 175 GDEVIVPKSIKRAKGNQSSKKS 196 DE ++ N ++S Sbjct: 66 SDEWTGAYGVQVQVKNHQVRES 87 >gi|260903897|ref|ZP_05912219.1| helix-turn-helix domain-containing protein [Brevibacterium linens BL2] Length = 182 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G RI+ RK N+ T E+A+ A +A++ E G TS+ A+ L + Sbjct: 10 RVFGARIRARRKYNDLTLNELAVRAGISRAALSKIERGEQDTSVSNAMGLSRALGVDVGE 69 Query: 90 IY 91 + Sbjct: 70 LL 71 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + N + L GAR+++ RK ++ E G+ + LS E+G + A + Sbjct: 1 MVNTEDLGARVFGARIRARRKYNDLTLNELAVRAGISRAALSKIERGEQDTSVSNAMGLS 60 Query: 163 QVTKKHLDWIYFGDEVIVPKS 183 + + + EV++ S Sbjct: 61 RALGVDVGELLAPPEVVITSS 81 >gi|30263082|ref|NP_845459.1| transcriptional regulator AnsR [Bacillus anthracis str. Ames] gi|47528428|ref|YP_019777.1| transcriptional regulator AnsR [Bacillus anthracis str. 'Ames Ancestor'] gi|49185923|ref|YP_029175.1| transcriptional regulator AnsR [Bacillus anthracis str. Sterne] gi|49479196|ref|YP_037209.1| ans operon repressor protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869017|ref|ZP_02213677.1| transcriptional regulator AnsR [Bacillus anthracis str. A0488] gi|167632213|ref|ZP_02390540.1| transcriptional regulator AnsR [Bacillus anthracis str. A0442] gi|167637327|ref|ZP_02395607.1| transcriptional regulator AnsR [Bacillus anthracis str. A0193] gi|170684798|ref|ZP_02876023.1| transcriptional regulator AnsR [Bacillus anthracis str. A0465] gi|170705177|ref|ZP_02895642.1| transcriptional regulator AnsR [Bacillus anthracis str. A0389] gi|177650023|ref|ZP_02933024.1| transcriptional regulator AnsR [Bacillus anthracis str. A0174] gi|190564580|ref|ZP_03017501.1| transcriptional regulator AnsR [Bacillus anthracis Tsiankovskii-I] gi|196042989|ref|ZP_03110228.1| transcriptional regulator AnsR [Bacillus cereus 03BB108] gi|218904253|ref|YP_002452087.1| transcriptional regulator AnsR [Bacillus cereus AH820] gi|227814067|ref|YP_002814076.1| transcriptional regulator AnsR [Bacillus anthracis str. CDC 684] gi|228915705|ref|ZP_04079288.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229125016|ref|ZP_04254184.1| HTH-type transcriptional regulator ansR [Bacillus cereus 95/8201] gi|229603920|ref|YP_002867352.1| transcriptional regulator AnsR [Bacillus anthracis str. A0248] gi|254685674|ref|ZP_05149533.1| ans operon repressor protein [Bacillus anthracis str. CNEVA-9066] gi|254723085|ref|ZP_05184873.1| ans operon repressor protein [Bacillus anthracis str. A1055] gi|254738141|ref|ZP_05195844.1| ans operon repressor protein [Bacillus anthracis str. Western North America USA6153] gi|254742689|ref|ZP_05200374.1| ans operon repressor protein [Bacillus anthracis str. Kruger B] gi|254752455|ref|ZP_05204491.1| ans operon repressor protein [Bacillus anthracis str. Vollum] gi|254760973|ref|ZP_05212997.1| ans operon repressor protein [Bacillus anthracis str. Australia 94] gi|301054627|ref|YP_003792838.1| ans operon repressor protein [Bacillus anthracis CI] gi|30257715|gb|AAP26945.1| transcriptional regulator AnsR [Bacillus anthracis str. Ames] gi|47503576|gb|AAT32252.1| transcriptional regulator AnsR [Bacillus anthracis str. 'Ames Ancestor'] gi|49179850|gb|AAT55226.1| transcriptional regulator AnsR [Bacillus anthracis str. Sterne] gi|49330752|gb|AAT61398.1| ans operon repressor protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164715743|gb|EDR21260.1| transcriptional regulator AnsR [Bacillus anthracis str. A0488] gi|167514834|gb|EDR90200.1| transcriptional regulator AnsR [Bacillus anthracis str. A0193] gi|167532511|gb|EDR95147.1| transcriptional regulator AnsR [Bacillus anthracis str. A0442] gi|170130032|gb|EDS98894.1| transcriptional regulator AnsR [Bacillus anthracis str. A0389] gi|170671058|gb|EDT21796.1| transcriptional regulator AnsR [Bacillus anthracis str. A0465] gi|172083975|gb|EDT69034.1| transcriptional regulator AnsR [Bacillus anthracis str. A0174] gi|190563897|gb|EDV17861.1| transcriptional regulator AnsR [Bacillus anthracis Tsiankovskii-I] gi|196026473|gb|EDX65141.1| transcriptional regulator AnsR [Bacillus cereus 03BB108] gi|218539822|gb|ACK92220.1| transcriptional regulator AnsR [Bacillus cereus AH820] gi|227003092|gb|ACP12835.1| transcriptional regulator AnsR [Bacillus anthracis str. CDC 684] gi|228658432|gb|EEL14104.1| HTH-type transcriptional regulator ansR [Bacillus cereus 95/8201] gi|228843935|gb|EEM89001.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268328|gb|ACQ49965.1| transcriptional regulator AnsR [Bacillus anthracis str. A0248] gi|300376796|gb|ADK05700.1| ans operon repressor protein [Bacillus cereus biovar anthracis str. CI] Length = 125 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|326390400|ref|ZP_08211958.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993518|gb|EGD51952.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 132 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK RK NN T ++ ++ EN S + L+N +S DW+ Sbjct: 4 IGERIKYARKKNNLTITALSKLTGLSVGNLSDLENNKSMPSSNALIKLKNALNVSIDWLL 63 Query: 92 DGEV 95 G+ Sbjct: 64 TGQQ 67 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K RK ++ KL G+ LS+ E +++P K+K +DW+ G Sbjct: 6 ERIKYARKKNNLTITALSKLTGLSVGNLSDLENNKSMPSSNALIKLKNALNVSIDWLLTG 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ K + ++ +S +K Sbjct: 66 QQIEYVKEEEEKYLSREEFESISEK 90 >gi|323343951|ref|ZP_08084178.1| DNA-binding protein [Prevotella oralis ATCC 33269] gi|323095770|gb|EFZ38344.1| DNA-binding protein [Prevotella oralis ATCC 33269] Length = 184 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 26/77 (33%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R+K +R + +E+A E G S+ + Y Sbjct: 1 MEEAIKQIGQRLKGLRDVLDIPAEEVAELCGISLEHYLKIEAGEADPSVYRLTKISKRYG 60 Query: 85 ISFDWIYDGEVIDRRYE 101 I D + GE Sbjct: 61 IDLDVLLFGEEPRMNAY 77 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 32/86 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R + E +L G+ E G P + KI + LD + FG Sbjct: 10 QRLKGLRDVLDIPAEEVAELCGISLEHYLKIEAGEADPSVYRLTKISKRYGIDLDVLLFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + KG S KD + Sbjct: 70 EEPRMNAYFLTRKGQGFSIDRSKDYQ 95 >gi|257877436|ref|ZP_05657089.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811602|gb|EEV40422.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus EC20] Length = 201 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 32/81 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 23 EIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEEF 82 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + E + L Sbjct: 83 FREENAQHQVVYREEDSTLYY 103 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 21 NMEIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPE 80 Query: 171 WIYFGD 176 + + Sbjct: 81 EFFREE 86 >gi|226349278|ref|YP_002776392.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226245193|dbj|BAH55540.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 146 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 18/130 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++D R T+ +++ + ++ +E + + I D + Sbjct: 13 LEDARTTAGITRGDLSRAIGVDPTTIHNWETSRTHPQPDHLARAAEKLGIPLDRLVVVPE 72 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 R + +R G++Q G+ +T+ E+G Sbjct: 73 DSRT------------------IADLRNLAGLTQKHVADRTGLSTTTIGRIERGEGSLSD 114 Query: 156 KPARKIKQVT 165 + + + Sbjct: 115 RHTTALAEAL 124 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ R G+++ + + +G+ +T+ N+E RT P+ + + LD + Sbjct: 8 FKPQALEDARTTAGITRGDLSRAIGVDPTTIHNWETSRTHPQPDHLARAAEKLGIPLDRL 67 Query: 173 Y 173 Sbjct: 68 V 68 >gi|225017063|ref|ZP_03706255.1| hypothetical protein CLOSTMETH_00988 [Clostridium methylpentosum DSM 5476] gi|224950230|gb|EEG31439.1| hypothetical protein CLOSTMETH_00988 [Clostridium methylpentosum DSM 5476] Length = 80 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+KD+R+ + Q ++A +S + +E GM IR+ L + Y S D+I Sbjct: 5 QRLKDLREDRDLDQVDVAKILETTQSQYSKYERGMRELPIRHLNTLADFYHTSADYIMGR 64 Query: 94 EVIDRRYED 102 Y + Sbjct: 65 TNQKNPYPE 73 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 29/75 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R+D+ + Q++ K+L S S YE+G I+ + D+ Sbjct: 1 MFYMQRLKDLREDRDLDQVDVAKILETTQSQYSKYERGMRELPIRHLNTLADFYHTSADY 60 Query: 172 IYFGDEVIVPKSIKR 186 I P R Sbjct: 61 IMGRTNQKNPYPEAR 75 >gi|167463651|ref|ZP_02328740.1| predicted transcription regulator, containing DNA-binding HTH domain [Paenibacillus larvae subsp. larvae BRL-230010] Length = 64 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 30/62 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R+ +Q+++A ++ ENG + S+ A + + S ++++ Sbjct: 3 NRVRELREERGISQEKLAQILGVSRQSIISIENGRYNPSLILAYQIPKYFNKSIEYVFFW 62 Query: 94 EV 95 E Sbjct: 63 EE 64 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 40/64 (62%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+++G+SQ + ++LG+ ++ + E GR P + A +I + K +++++ Sbjct: 1 MKNRVRELREERGISQEKLAQILGVSRQSIISIENGRYNPSLILAYQIPKYFNKSIEYVF 60 Query: 174 FGDE 177 F +E Sbjct: 61 FWEE 64 >gi|153816351|ref|ZP_01969019.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756] gi|317501012|ref|ZP_07959220.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089033|ref|ZP_08337939.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846312|gb|EDK23230.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756] gi|316897590|gb|EFV19653.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium 8_1_57FAA] gi|330406233|gb|EGG85752.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium 3_1_46FAA] Length = 255 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 27/74 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +R+ +Q+E A + ++ +E ++ + + +E + D + Sbjct: 2 KIGETILKLREEKKMSQEEFAQYYHVTRQTISNWEKEKNYPDLQTLVKISDESGVPLDSM 61 Query: 91 YDGEVIDRRYEDVT 104 + D Sbjct: 62 LKDNFSMVQEIDKK 75 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 42/83 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG + +R++K MSQ EF + + T+SN+E+ + P+++ KI + LD Sbjct: 1 MKIGETILKLREEKKMSQEEFAQYYHVTRQTISNWEKEKNYPDLQTLVKISDESGVPLDS 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + + +V + K+ + + K Sbjct: 61 MLKDNFSMVQEIDKKVRHLKIFK 83 >gi|194467261|ref|ZP_03073248.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454297|gb|EDX43194.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 74 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K RK +Q ++A +NL EN + S+ + L + ++ Sbjct: 2 NRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLFWE 61 Query: 94 EVIDRRYEDVTNK 106 E + R N Sbjct: 62 ERKNERNNQHQNY 74 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 33/62 (53%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RKD+G+SQ++ + +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLFW 60 Query: 175 GD 176 + Sbjct: 61 EE 62 >gi|148262729|ref|YP_001229435.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396229|gb|ABQ24862.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 187 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R A T + +A + ++ EN S I + +++ Sbjct: 5 NIGAKIKKLRLAKKLTLQAVAKETGFSPALISQIENNNVSPPIATLSRIAKFFDVKVGMF 64 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + + +YE V +R Sbjct: 65 FTEDEEEYKYEVVRKSER 82 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + Y IGA++K +R K ++ K G + +S E P I +I + Sbjct: 1 MTDYNIGAKIKKLRLAKKLTLQAVAKETGFSPALISQIENNNVSPPIATLSRIAKFFDVK 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 + + DE + R + Sbjct: 61 VGMFFTEDEEEYKYEVVRKSERK 83 >gi|329116441|ref|ZP_08245158.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906846|gb|EGE53760.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 176 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY-D 92 R+K++RK TQ+ +A G + ++ +EN A L + + +S ++ Sbjct: 2 NRLKELRKEKGLTQESLAHGIGTTKLTISNWENEKHVIKSDKAKQLADYFNVSVPYLLGF 61 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGA 116 + D + + K D + + Sbjct: 62 SDFKDEQKSALEVYKTKDGFEVVK 85 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY- 173 RLK +RK+KG++Q +G T+SN+E + + + A+++ + ++ Sbjct: 1 MNRLKELRKEKGLTQESLAHGIGTTKLTISNWENEKHVIKSDKAKQLADYFNVSVPYLLG 60 Query: 174 ---FGDEVIVPKSIKRAKGNQSSKKSK 197 F DE + + K KS+ Sbjct: 61 FSDFKDEQKSALEVYKTKDGFEVVKSR 87 >gi|307308409|ref|ZP_07588113.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306901012|gb|EFN31620.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 470 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ IR TQ MA S +NL E +++ L L + Y++ + + Sbjct: 9 GPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDLEEL 66 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + LG+ S L+ E+ + ++ K+ V K L+ + Sbjct: 12 VRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDLEEL 66 >gi|307318972|ref|ZP_07598403.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306895386|gb|EFN26141.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 470 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ IR TQ MA S +NL E +++ L L + Y++ + + Sbjct: 9 GPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDLEEL 66 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + LG+ S L+ E+ + ++ K+ V K L+ + Sbjct: 12 VRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDLEEL 66 >gi|291520506|emb|CBK75727.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 97 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK RKA + +Q E+A + V +E+G SI + N IS + Sbjct: 6 DIGNRIKQARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGILNEIANILNISPAEL 65 Query: 91 YDGEVIDRRYEDVTN 105 + + + +++ Sbjct: 66 IGYQKKNITLDTLSD 80 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K RK + +SQ E LG T+ YE G P I +I + + Sbjct: 9 NRIKQARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGILNEIANILNISPAELI 66 >gi|291537564|emb|CBL10676.1| Helix-turn-helix [Roseburia intestinalis M50/1] gi|291560441|emb|CBL39241.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] Length = 209 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R+K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + ++ A+G L+ + Sbjct: 64 VSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 99 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 12 SRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 70 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 71 GETDEYETDITDKRE 85 >gi|260892046|ref|YP_003238143.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864187|gb|ACX51293.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 81 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 27/77 (35%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R TQ E+A ++ E G + S+ AL + S + ++ E Sbjct: 5 LRKARLRAGLTQSEVARLVGLTRASYTNIERGHKNPSVVTALRIAQVLNRSVEELFSDEP 64 Query: 96 IDRRYEDVTNKKRLDPY 112 + +D Y Sbjct: 65 PAGQAAKREANTTMDKY 81 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 38/80 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + L+ R G++Q E +L+G+ ++ +N E+G P + A +I QV + ++ ++ Sbjct: 1 MRSSLRKARLRAGLTQSEVARLVGLTRASYTNIERGHKNPSVVTALRIAQVLNRSVEELF 60 Query: 174 FGDEVIVPKSIKRAKGNQSS 193 + + + A Sbjct: 61 SDEPPAGQAAKREANTTMDK 80 >gi|227820908|ref|YP_002824878.1| putative HTH transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227339907|gb|ACP24125.1| putative HTH transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 469 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ IR TQ MA S +NL E +++ L L + Y++ + + Sbjct: 9 GPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDLEEL 66 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + LG+ S L+ E+ + ++ K+ V K L+ + Sbjct: 12 VRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDLEEL 66 >gi|218290643|ref|ZP_03494734.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239308|gb|EED06506.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 106 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 28/86 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ RK + TQ ++A + + E G + + + + + + Sbjct: 4 FGRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDVEELC 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 ++ ++ D A Sbjct: 64 GPTWPGDGWDRGAAEEAADSRAGHGH 89 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A G RL++ RK K M+Q + + LG+ +T+ E+G P I ++ Sbjct: 1 MDAFGRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDVE 60 Query: 171 WI 172 + Sbjct: 61 EL 62 >gi|187776409|ref|ZP_02802465.2| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|188025234|ref|ZP_02776939.2| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|189010761|ref|ZP_02809209.2| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189402468|ref|ZP_02782667.2| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189403410|ref|ZP_02795288.2| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|189404368|ref|ZP_02788860.2| putative repressor protein [Escherichia coli O157:H7 str. EC4501] gi|189406229|ref|ZP_02827125.2| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208810492|ref|ZP_03252368.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208816709|ref|ZP_03257829.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|208819596|ref|ZP_03259916.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|209400359|ref|YP_002271137.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217329536|ref|ZP_03445615.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588] gi|187767281|gb|EDU31125.1| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|188014100|gb|EDU52222.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|188998604|gb|EDU67590.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189355391|gb|EDU73810.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189360762|gb|EDU79181.1| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|189366046|gb|EDU84462.1| putative repressor protein [Escherichia coli O157:H7 str. EC4501] gi|189375816|gb|EDU94232.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208725008|gb|EDZ74715.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208731052|gb|EDZ79741.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|208739719|gb|EDZ87401.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|209161759|gb|ACI39192.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217317304|gb|EEC25733.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588] Length = 219 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + +G R+K +RK TQ E+ + + +E + + L Sbjct: 3 EKMMESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGT 62 Query: 86 SFDWIYDG 93 + ++ G Sbjct: 63 TESYLLYG 70 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 37/79 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RKDKG++Q+E GKL G+ T+ +E+ P K K+ Q ++ +G Sbjct: 13 LKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLLYGVS 72 Query: 178 VIVPKSIKRAKGNQSSKKS 196 ++ G + S Sbjct: 73 SPELSFVQSTSGTKIPYLS 91 >gi|182419849|ref|ZP_02951089.1| putative phage repressor [Clostridium butyricum 5521] gi|237666894|ref|ZP_04526879.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376397|gb|EDT73979.1| putative phage repressor [Clostridium butyricum 5521] gi|237658093|gb|EEP55648.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 156 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK N TQ E+A + S++ ++E + S+ + IS + Sbjct: 3 IGARIRTSRKKANLTQAELAKLIDVSPSSIRMYETNKRNVSLEILKKISTALNISISDLI 62 Query: 92 DGEVIDRRYEDVTNKKR 108 + +D+ Y + K Sbjct: 63 GYDNVDKDYISINTSKN 79 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGAR+++ RK ++Q E KL+ + S++ YE + ++ +KI + Sbjct: 1 MTIGARIRTSRKKANLTQAELAKLIDVSPSSIRMYETNKRNVSLEILKKISTALNISISD 60 Query: 172 IYFGDEVIVPK-SIKRAKGNQSSKKS 196 + D V SI +K + + K + Sbjct: 61 LIGYDNVDKDYISINTSKNSNTPKSN 86 >gi|157691284|ref|YP_001485746.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157680042|gb|ABV61186.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 184 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +R + ++MA ++ + E G + +I + N ++SF + Sbjct: 8 ISKNVRLLRDQKKLSLEKMAELTGVSKTMIGQIERGESTPTITTLWKIANGLKVSFSELI 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + + + L Sbjct: 68 HAPQPEIKVVRHEDAQIL 85 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R K +S + +L G+ + + E+G + P I KI K + Sbjct: 10 KNVRLLRDQKKLSLEKMAELTGVSKTMIGQIERGESTPTITTLWKIANGLKVSFSELI 67 >gi|152969575|ref|YP_001334684.1| DNA-binding transcriptional repressor PuuR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580692|ref|YP_002239362.1| transcriptional regulator PuuR [Klebsiella pneumoniae 342] gi|238894056|ref|YP_002918790.1| DNA-binding transcriptional repressor PuuR [Klebsiella pneumoniae NTUH-K2044] gi|262043620|ref|ZP_06016729.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936213|ref|YP_003440272.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|290510732|ref|ZP_06550102.1| DNA-binding transcriptional repressor PuuR [Klebsiella sp. 1_1_55] gi|330010156|ref|ZP_08306698.1| HTH-type transcriptional regulator PuuR [Klebsiella sp. MS 92-3] gi|150954424|gb|ABR76454.1| putative oxidoreductase/putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569750|gb|ACI11526.1| transcriptional regulator PuuR [Klebsiella pneumoniae 342] gi|238546372|dbj|BAH62723.1| putative oxidoreductase/putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038958|gb|EEW40120.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288890922|gb|ADC59240.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] gi|289777448|gb|EFD85446.1| DNA-binding transcriptional repressor PuuR [Klebsiella sp. 1_1_55] gi|328534622|gb|EGF61198.1| HTH-type transcriptional regulator PuuR [Klebsiella sp. MS 92-3] Length = 185 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRLDPY 112 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDLIEM 88 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 4 DGLAPGKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 Query: 170 DWIYFGDEVIVPKSI 184 + E + Sbjct: 64 SEFFSEPEKPDEPQV 78 >gi|118463045|ref|YP_882635.1| transcriptional regulator [Mycobacterium avium 104] gi|254775896|ref|ZP_05217412.1| transcriptional regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|118164332|gb|ABK65229.1| transcriptional regulator, XRE family protein with cupin sensor domain [Mycobacterium avium 104] Length = 178 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R+ T + +A +S ++ E G + SI AL + ++ ++ E Sbjct: 5 LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDEA 64 Query: 96 IDRR 99 + Sbjct: 65 AREK 68 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + A L+ +R+ +G++ G+ S LS E+G++ P I A K+ + + ++ Sbjct: 1 MTALLRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60 Query: 174 FGDEVIVPKSIKRAKG 189 + +++RA G Sbjct: 61 SDEAAREKIAVERAGG 76 >gi|82592707|gb|ABB84523.1| DigR [Myxococcus xanthus] Length = 197 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 M F+ +LQ+ L PE + +G I+D RK T K++A S Sbjct: 105 MEPEQFITAVRNALQKKGLSQDPEAD-LHRAIGRTIRDARKTQELTLKQLARRTGLSVSL 163 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ E S SI + + ++ ++ Sbjct: 164 LSQIERAESSASISSLYKIASALQLRMGELF 194 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 AIG ++ RK + ++ + + G+ S LS E+ + I KI + + Sbjct: 132 HRAIGRTIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSASISSLYKIASALQLRMG 191 Query: 171 WIY 173 ++ Sbjct: 192 ELF 194 >gi|15964466|ref|NP_384819.1| hypothetical protein SMc00769 [Sinorhizobium meliloti 1021] gi|15073643|emb|CAC45285.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 470 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ IR TQ MA S +NL E +++ L L + Y++ + + Sbjct: 9 GPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDLEEL 66 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + LG+ S L+ E+ + ++ K+ V K L+ + Sbjct: 12 VRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDLEEL 66 >gi|148262670|ref|YP_001229376.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396170|gb|ABQ24803.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 113 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 24/70 (34%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G R++ +R+ TQ+ +A + +E G + + I Sbjct: 8 REIGHRLRQLRQQAGWTQERLAEQIGVSTQQIQKYECGTNKMNTDRLQQVAQALSIPIQS 67 Query: 90 IYDGEVIDRR 99 ++ Sbjct: 68 LFTDTNDSLP 77 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 L+ IG RL+ +R+ G +Q + +G+ + YE G +++ Q Sbjct: 5 LNSREIGHRLRQLRQQAGWTQERLAEQIGVSTQQIQKYECGTNKMNTDRLQQVAQALSIP 64 Query: 169 LDWIYFGDEVIVPKSIKRA 187 + ++ +P ++ Sbjct: 65 IQSLFTDTNDSLPLAVAEK 83 >gi|85710340|ref|ZP_01041405.1| predicted transcription regulator, containing DNA-binding HTH domain [Erythrobacter sp. NAP1] gi|85689050|gb|EAQ29054.1| predicted transcription regulator, containing DNA-binding HTH domain [Erythrobacter sp. NAP1] Length = 66 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+ +RK +G++Q + L + T+ E + P + A ++ ++ ++ Sbjct: 1 MKNCLRDLRKGRGLNQADLANTLEVSRQTIIAIEADKYDPSLPMAYRLAAFFDVPVEELF 60 Query: 174 F 174 F Sbjct: 61 F 61 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++D+RK Q ++A + E S+ A L +++ + ++ Sbjct: 5 LRDLRKGRGLNQADLANTLEVSRQTIIAIEADKYDPSLPMAYRLAAFFDVPVEELFFNPW 64 Query: 96 ID 97 D Sbjct: 65 RD 66 >gi|327490523|gb|EGF22304.1| transcriptional regulator [Streptococcus sanguinis SK1058] Length = 71 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFW 60 Query: 175 GDEVIVPKS 183 ++ S Sbjct: 61 EPQLADEDS 69 >gi|315223084|ref|ZP_07864952.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315187773|gb|EFU21520.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 79 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 +++T I++ K++ ++K R ++ TQ+++A + L E G + S+ + Sbjct: 1 MVLTQRIKRMAKNL--KLKMARVEHDLTQRDLADAIGVTRQTIGLIEAGKYNPSLGLCIA 58 Query: 79 LRNEYEISFDWIYDGEVIDRR 99 + + + D ++ E + Sbjct: 59 ICKRLDKTLDQLFWEENKNEN 79 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +R+ A +LK R + ++Q + +G+ T+ E G+ P + I + Sbjct: 5 QRIKRMAKNLKLKMARVEHDLTQRDLADAIGVTRQTIGLIEAGKYNPSLGLCIAICKRLD 64 Query: 167 KHLDWIYFGD 176 K LD +++ + Sbjct: 65 KTLDQLFWEE 74 >gi|209521228|ref|ZP_03269950.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209498341|gb|EDZ98474.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 195 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 28/75 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI+++R A + +A + S ++L E G S + L + ++ Sbjct: 7 IARRIRELRDAQAWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVPLASLF 66 Query: 92 DGEVIDRRYEDVTNK 106 + + ++ Sbjct: 67 EQDGAPAAEPSPVSR 81 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF- 174 R++ +R + S + + S +S E+G++ P K+ L ++ Sbjct: 9 RRIRELRDAQAWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVPLASLFEQ 68 Query: 175 -GDEVIVPKSIKRA 187 G P + RA Sbjct: 69 DGAPAAEPSPVSRA 82 >gi|169824019|ref|YP_001691630.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|167830824|dbj|BAG07740.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] Length = 176 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 7/101 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + IK +RK N +Q+++A + + V+ +E G+ + L + S Sbjct: 1 MKMLNENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILQTSVS 60 Query: 89 WIYDGEVI-------DRRYEDVTNKKRLDPYAIGARLKSIR 122 + V D+ E + ++K R Sbjct: 61 VLLGENVEETEQSELDKISEKLEEINMQFFENKQKKIKVYR 101 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +KS+RK G+SQ + + + T+S +E+G ++P+ K+ ++ + + Sbjct: 1 MKMLNENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILQTSVS 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + G+ V + + K ++ ++ Sbjct: 61 VLL-GENVEETEQSELDKISEKLEE 84 >gi|116511497|ref|YP_808713.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107151|gb|ABJ72291.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 85 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 13 SLQEYTLIITPEIRQYWK-DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 SL+++ + E+ + D+ T I++ R A TQ ++A + AV +E G C Sbjct: 5 SLKDFQTLGDNELMEIKGGDLSTNIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEP 64 Query: 72 SIRYALYLRNEYEISFDWIYD 92 +I L + IS D + Sbjct: 65 NIETLKALATLFNISVDKLIR 85 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 31/78 (39%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 D + + + +++ R G++Q + + L + N+E+G+ P I Sbjct: 7 KDFQTLGDNELMEIKGGDLSTNIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEPNI 66 Query: 156 KPARKIKQVTKKHLDWIY 173 + + + + +D + Sbjct: 67 ETLKALATLFNISVDKLI 84 >gi|70727380|ref|YP_254296.1| hypothetical protein SH2381 [Staphylococcus haemolyticus JCSC1435] gi|68448106|dbj|BAE05690.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 76 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + D I R++ IR + + Q EFG+ LG+ T+ +E +P +K RK+ + Sbjct: 7 RIEDRIQISERIREIRLNAELLQYEFGERLGVGRVTVCRWENWAQLPPMKMIRKMAEEFN 66 Query: 167 KHLDWIYFGD 176 +WI +G+ Sbjct: 67 TTPEWILYGE 76 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + RI++IR Q E V +EN ++ + E+ + Sbjct: 9 EDRIQISERIREIRLNAELLQYEFGERLGVGRVTVCRWENWAQLPPMKMIRKMAEEFNTT 68 Query: 87 FDWIYDGE 94 +WI GE Sbjct: 69 PEWILYGE 76 >gi|298717173|ref|YP_003729815.1| HTH-type transcriptional regulatory protein [Pantoea vagans C9-1] gi|298361362|gb|ADI78143.1| Putative HTH-type transcriptional regulatory protein [Pantoea vagans C9-1] Length = 192 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 28/71 (39%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ + +G ++K R+ + ++A + + ++ E G S + L Sbjct: 5 LSSKEDDLNARIGLKVKAERERRGWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLS 64 Query: 81 NEYEISFDWIY 91 +++S + Sbjct: 65 GAFDMSMSQLL 75 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 27/68 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R+ +G S + + G+ + + E+G + P ++ + + E Sbjct: 20 VKAERERRGWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLSGAFDMSMSQLLAEME 79 Query: 178 VIVPKSIK 185 V ++ Sbjct: 80 VRTGVLVR 87 >gi|296156274|ref|ZP_06839113.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893780|gb|EFG73559.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 91 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ G ++ +R+A +Q+++A A S V E G SI L +++ + Sbjct: 6 REFGAAVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEH 65 Query: 90 IYDGEVIDRRYEDVTNKKRLDP 111 + + + +DP Sbjct: 66 LLTPSSNASGIAVLAHAAFVDP 87 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GA ++ +R+ +G SQ + + G+ S + E+G I I K+ + + ++ + Sbjct: 7 EFGAAVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEHL 66 Query: 173 YF 174 Sbjct: 67 LT 68 >gi|260854614|ref|YP_003228505.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|257753263|dbj|BAI24765.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] Length = 215 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G R+K +RK TQ E+ + + +E + + L + Sbjct: 2 MESLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTES 61 Query: 89 WIYDG 93 ++ G Sbjct: 62 YLLYG 66 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 37/79 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RKDKG++Q+E GKL G+ T+ +E+ P K K+ Q ++ +G Sbjct: 9 LKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLLYGVS 68 Query: 178 VIVPKSIKRAKGNQSSKKS 196 ++ G + S Sbjct: 69 SPELSFVQSTSGTKIPYLS 87 >gi|239832075|ref|ZP_04680404.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239824342|gb|EEQ95910.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 490 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 30/90 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 28 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 87 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 G+ L+ + Sbjct: 88 LGDDDRLLSAVSEALADPVFDNYKPNLQEL 117 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 26 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 85 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 86 ISLGDDDRLLSAVSEA 101 >gi|258516796|ref|YP_003193018.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780501|gb|ACV64395.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 133 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 ++G RI+ R + TQK++A N ++ +E G + L + IS + Sbjct: 2 NIGNRIRTQRILKDFTQKQLAELVNVSPQVISNWERGYTPVIPHDDVVRLADALGISPAY 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + I E D + ++K + Sbjct: 62 LLCETDISETPEQQIESAINDDADLLEFWHELKKRDDLQL 101 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI--KPARKIKQVTKKHL 169 IG R+++ R K +Q + +L+ + +SN+E+ P I ++ Sbjct: 1 MNIGNRIRTQRILKDFTQKQLAELVNVSPQVISNWER-GYTPVIPHDDVVRLADALGISP 59 Query: 170 DWIYFGDEVIV 180 ++ ++ Sbjct: 60 AYLLCETDISE 70 >gi|317499111|ref|ZP_07957390.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|291524086|emb|CBK89673.1| Helix-turn-helix [Eubacterium rectale DSM 17629] gi|316893631|gb|EFV15834.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 209 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R+K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + ++ A+G L+ + Sbjct: 64 VSVEWL-KGETDEYETDITDKRELQIRDAMGDILEQL 99 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 12 SRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 70 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 71 GETDEYETDITDKRE 85 >gi|160937081|ref|ZP_02084444.1| hypothetical protein CLOBOL_01970 [Clostridium bolteae ATCC BAA-613] gi|158439982|gb|EDP17730.1| hypothetical protein CLOBOL_01970 [Clostridium bolteae ATCC BAA-613] Length = 119 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +K +G RIK R TQ+++A ++ E G S++ + + N E Sbjct: 1 MELDYKAIGKRIKIQRIQREMTQEKLAELTGLSNPHISNVETGSTQVSLKSLIAIANALE 60 Query: 85 ISFDWIYDGEV-IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 I+ D + + + + +D IR M Q Sbjct: 61 ITPDVLLCDNIRYGKHIFKNAVMEAVDDCDEV----EIRIMADMVQA 103 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD AIG R+K R + M+Q + +L G+ N +SN E G T +K I + Sbjct: 1 MELDYKAIGKRIKIQRIQREMTQEKLAELTGLSNPHISNVETGSTQVSLKSLIAIANALE 60 Query: 167 KHLDWIYFGD 176 D + + Sbjct: 61 ITPDVLLCDN 70 >gi|126731204|ref|ZP_01747012.1| transcriptional regulator, XRE family protein [Sagittula stellata E-37] gi|126708506|gb|EBA07564.1| transcriptional regulator, XRE family protein [Sagittula stellata E-37] Length = 464 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 2/82 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R + +TQ +MA S VNL E S S+ L L Y + DW Sbjct: 5 IGPRLRRLRIEHGQTQVQMAKELGISTSYVNLLEKNERSVSVPVLLKLFEAYGV--DWRD 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 E D DP Sbjct: 63 IAEDDDTAALADIRAALQDPLF 84 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R + G +Q++ K LG+ S ++ E+ + K+ + I D+ Sbjct: 9 LRRLRIEHGQTQVQMAKELGISTSYVNLLEKNERSVSVPVLLKLFEAYGVDWRDIAEDDD 68 Query: 178 VIVPKSIKRA 187 I+ A Sbjct: 69 TAALADIRAA 78 >gi|332300885|ref|YP_004442806.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177948|gb|AEE13638.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 355 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 25/75 (33%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ R T +E+A + ++ E G + + L ++ D+ Sbjct: 6 GERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPIDYFVY 65 Query: 93 GEVIDRRYEDVTNKK 107 + + K Sbjct: 66 QDTPIIESVNFRKIK 80 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R +GM+ E +G+ ++ +SN E+G + + +D+ + Sbjct: 7 ERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPIDYFVYQ 66 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 D I+ R SSK+ KK Sbjct: 67 DTPIIESVNFRKIKAFSSKEDKK 89 >gi|294500115|ref|YP_003563815.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294350052|gb|ADE70381.1| DNA-binding protein [Bacillus megaterium QM B1551] Length = 181 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +++ RKA + +E+A A S ++ E G+ + SI L ++ Sbjct: 5 DIGKKVEKFRKAKGLSSRELAKLAEITPSMLSQIERGLANPSISTLKILAKCLDVPTFSF 64 Query: 91 YDGEVIDRRYEDVTNKKR 108 E+ N+++ Sbjct: 65 LLEEINTSHLVVRLNERK 82 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK KG+S E KL + S LS E+G P I + + + Sbjct: 1 MENIDIGKKVEKFRKAKGLSSRELAKLAEITPSMLSQIERGLANPSISTLKILAKCLDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 +E+ + R ++ K + Sbjct: 61 TFSFLL-EEINTSHLVVRLNERKTMKVKE 88 >gi|228923759|ref|ZP_04087037.1| hypothetical protein bthur0011_47340 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229076410|ref|ZP_04209375.1| hypothetical protein bcere0024_47140 [Bacillus cereus Rock4-18] gi|228706845|gb|EEL59053.1| hypothetical protein bcere0024_47140 [Bacillus cereus Rock4-18] gi|228835888|gb|EEM81251.1| hypothetical protein bthur0011_47340 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 79 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 31/68 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFN 61 Query: 85 ISFDWIYD 92 +S + I+ Sbjct: 62 VSVEEIFT 69 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI ++ Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIF 60 Query: 166 KKHLDWIYF---GDEVIVP 181 ++ I+ G+E Sbjct: 61 NVSVEEIFTLVEGEEDDEE 79 >gi|254383791|ref|ZP_04999139.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194342684|gb|EDX23650.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 294 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +++A +S ++ ENG S S R L + YE+ Sbjct: 11 RRRLGMELRKLREDKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCDVYEVEDR 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RLVDSLM--QMAKDSRQQGWWHAFGD 94 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+DKGM+ + + L + S +S E GR + R + V + Sbjct: 16 MELRKLREDKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCDVYEV 67 >gi|182680496|ref|YP_001834642.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636379|gb|ACB97153.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 477 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 GT+I+ +R+A+ TQ A S +N EN S L L + + Sbjct: 8 GTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSVDLSEF 65 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G +++ +R+ ++Q F + LG+ S L+ E + + Q L Sbjct: 5 FFAGTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSVDLSE 64 Query: 172 IYFGDEVIVPKSIKRA 187 D + +K A Sbjct: 65 FAQEDTDRLIGDLKEA 80 >gi|83589152|ref|YP_429161.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572066|gb|ABC18618.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 101 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 32/70 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K++R+ ++ TQ +A + +S ++ E+G + + + + ++ + Sbjct: 3 LGNRLKELREKHHLTQYRLAKLSGVSQSHISEIESGDKEPTTGTLMKICSAMGLTLAEFF 62 Query: 92 DGEVIDRRYE 101 E + Sbjct: 63 TEETPSLPPD 72 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G RLK +R+ ++Q KL G+ S +S E G P KI L Sbjct: 1 MTLGNRLKELREKHHLTQYRLAKLSGVSQSHISEIESGDKEPTTGTLMKICSAMGLTLAE 60 Query: 172 IYFGDEVIVPKSIKR 186 + + +P +++ Sbjct: 61 FFTEETPSLPPDLRQ 75 >gi|296156511|ref|ZP_06839349.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893110|gb|EFG72890.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 285 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 34/98 (34%), Gaps = 5/98 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW- 89 D+G ++ R +Q +++ A + ++ E+G + S + + + +I Sbjct: 14 DLGVLLRHWRDIRGISQLDLSFRAGVSQRHISFIESGRSAPSRQMLMDIAQTLDIPLRER 73 Query: 90 ---IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + + N + + + +R+ Sbjct: 74 NTLLLAAGYAPIYADGAWNAQEMQSVTKALG-RMLRQH 110 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R +G+SQ++ G+ +S E GR+ P + I Q L Sbjct: 19 LRHWRDIRGISQLDLSFRAGVSQRHISFIESGRSAPSRQMLMDIAQTLDIPL 70 >gi|295107230|emb|CBL04773.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 69 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 K +G RIK++R+ + Q+ A + S + ENG + I+ + + IS Sbjct: 2 DIRKALGLRIKELREERDLPQRAFAEASGLDRSYLAAIENGQINVGIKTVERIAAGFGIS 61 Query: 87 FDWIYDG 93 + ++ G Sbjct: 62 VEQLFKG 68 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +R+++ + Q F + G+ S L+ E G+ IK +I ++ ++ G Sbjct: 11 IKELREERDLPQRAFAEASGLDRSYLAAIENGQINVGIKTVERIAAGFGISVEQLFKG 68 >gi|291550352|emb|CBL26614.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus torques L2-14] Length = 119 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 43/100 (43%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 NK++ D A G +K+ RK KG+S+ + L + +++ E P ++ ++ Sbjct: 1 MKQNKEKFDFKAFGQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILYEL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + +D +F + + +R S+KD K Sbjct: 61 VTLLDVSVDQFFFPEREQEKSTRRRQLDTMLDGMSEKDLK 100 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 34/98 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + +K G IK RKA ++ ++A N + EN S++ L Sbjct: 5 KEKFDFKAFGQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILYELVTLL 64 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++S D + E + + LK + Sbjct: 65 DVSVDQFFFPEREQEKSTRRRQLDTMLDGMSEKDLKIL 102 >gi|229085306|ref|ZP_04217548.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-44] gi|228698025|gb|EEL50768.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-44] Length = 186 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 31/183 (16%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK N+ T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNDMTIREFADYAGISTSLISQIERGQANPSLSVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M S Sbjct: 66 INDIDTDSLISRKKDRKKVYRENNDHIVYDVLTPDFMKARIELLMMDLNAHAI---TTES 122 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTK----KHLD----WIYFGDEVIVPKSIKRAKGNQSS 193 S+ E+ +I V K L+ ++ GD V +P ++K N+S Sbjct: 123 HYSHEEK----------EEIAVVMKGQAYVELEGTEYFLDEGDVVRIPPNVKHRFLNKSD 172 Query: 194 KKS 196 + + Sbjct: 173 EAN 175 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +G + S RK M+ EF G+ S +S E+G+ P + I + Sbjct: 1 MINHRLGQTVLSYRKKNDMTIREFADYAGISTSLISQIERGQANPSLSVLELIAKALNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 L ++ D + I R K + + D Sbjct: 61 LFTLFIND-IDTDSLISRKKDRKKVYRENND 90 >gi|254383920|ref|ZP_04999267.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194342812|gb|EDX23778.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 76 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 109 LDPYAIGARLKSIR-KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + P I R++ +R + M+Q + + +G+ T+ E+GR P ++ A +I +V Sbjct: 1 MKPTGITNRIRVLRFEHAEMTQADLAERIGVTRQTVIAIEKGRYSPSLETAFRIARVFAV 60 Query: 168 HLDWIY--FGDEVIVP 181 L+ ++ +E P Sbjct: 61 PLEQVFQYSDEEGTAP 76 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 32 VGTRIKDIR-KANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+ +R + TQ ++A V E G S S+ A + + + + + Sbjct: 6 ITNRIRVLRFEHAEMTQADLAERIGVTRQTVIAIEKGRYSPSLETAFRIARVFAVPLEQV 65 Query: 91 YDGEVID 97 + + Sbjct: 66 FQYSDEE 72 >gi|126652117|ref|ZP_01724299.1| DNA-binding protein [Bacillus sp. B14905] gi|126591025|gb|EAZ85136.1| DNA-binding protein [Bacillus sp. B14905] Length = 181 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +++ RK + T +E+A A S ++ E G+ + SI+ L ++ Sbjct: 5 DIGKKVEKYRKMKDLTNRELAALAGITPSMLSQIERGLANPSIQTLKVLAKTLDVPTFTF 64 Query: 91 YDGEVIDRRYEDVTNKKR 108 + E +NK++ Sbjct: 65 FMEETNTEALIVRSNKRK 82 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +++ RK K ++ E L G+ S LS E+G P I+ + + + Sbjct: 1 MENIDIGKKVEKYRKMKDLTNRELAALAGITPSMLSQIERGLANPSIQTLKVLAKTLDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 + +F +E I R+ + Sbjct: 61 T-FTFFMEETNTEALIVRSNKRKK 83 >gi|15902995|ref|NP_358545.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|15458561|gb|AAK99755.1| Hypothetical protein spr0951 [Streptococcus pneumoniae R6] Length = 177 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 21 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 75 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 K + IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Sbjct: 9 YNGFIKIKEFAMIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDII 68 Query: 162 KQVTKKHLDWIYFGDEVIVP 181 Q I D+++ P Sbjct: 69 CQKFNVSYVDIVGEDKMLNP 88 >gi|308181887|ref|YP_003926015.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047378|gb|ADN99921.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 212 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQ ++A + ++ +EN + + L + Y++ D + Sbjct: 5 EKLKVCRKHAQLTQSQVAEQLHVSRKTISGWENDHSFPDVGSLVQLSDSYDVRLDDLMRD 64 Query: 94 E 94 + Sbjct: 65 D 65 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK RK ++Q + + L + T+S +E + P++ ++ LD Sbjct: 1 MKFSEKLKVCRKHAQLTQSQVAEQLHVSRKTISGWENDHSFPDVGSLVQLSDSYDVRLDD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ ++ + + +Q S+K Sbjct: 61 LMR-DDHLLAYYKEAEQLHQKSRK 83 >gi|307544901|ref|YP_003897380.1| hypothetical protein HELO_2311 [Halomonas elongata DSM 2581] gi|307216925|emb|CBV42195.1| hypothetical protein HELO_2311 [Halomonas elongata DSM 2581] Length = 191 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 9/78 (11%), Positives = 26/78 (33%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + ++ +R+ + A ++ + E G S ++ L + + Sbjct: 1 MEDISRHIAATLRALREQRGWSLDRTARETGVSKAMLGQIERGESSPTVATLWKLASGFR 60 Query: 85 ISFDWIYDGEVIDRRYED 102 +SF + G Sbjct: 61 VSFSGLLGGGSAPSERVR 78 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I A L+++R+ +G S + G+ + L E+G + P + K+ + + Sbjct: 7 HIAATLRALREQRGWSLDRTARETGVSKAMLGQIERGESSPTVATLWKLASGFRVSFSGL 66 Query: 173 YFG 175 G Sbjct: 67 LGG 69 >gi|300697135|ref|YP_003747796.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299073859|emb|CBJ53386.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 126 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK R A K+Q+ +A A+ + ++ E G+ + S+ + ++ ++ Sbjct: 41 VGARIKQCRHAAEKSQERLAFEASVDRTYISSIERGIANPSVETLANICYALNVTLAELF 100 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+GAR+K R SQ + + +S+ E+G P ++ I L Sbjct: 39 IAVGARIKQCRHAAEKSQERLAFEASVDRTYISSIERGIANPSVETLANICYALNVTLAE 98 Query: 172 IY 173 ++ Sbjct: 99 LF 100 >gi|295102943|emb|CBL00487.1| Helix-turn-helix. [Faecalibacterium prausnitzii SL3/3] Length = 273 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 4/103 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC---STSIRYALYLRNEYEISFDWI 90 R+KD+R +E+A +SA+ +EN + + L + YE+S D++ Sbjct: 9 ERLKDLRVEKGLKLEELAEKTGISKSALASYENEENRNKEINHGNLIALADFYEVSIDYL 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + + ++ L A+ A LKS R + + Sbjct: 69 FCRTENREQINTPLSELHLTDEAV-ALLKSGRINTRLLCEMMS 110 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT---IPEIKPARKIKQVTK 166 D ++ RLK +R +KG+ E + G+ S L++YE + + Sbjct: 3 DHVSLQERLKDLRVEKGLKLEELAEKTGISKSALASYENEENRNKEINHGNLIALADFYE 62 Query: 167 KHLDWIYFGDE 177 +D+++ E Sbjct: 63 VSIDYLFCRTE 73 >gi|293567401|ref|ZP_06678750.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1071] gi|291589918|gb|EFF21717.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1071] Length = 221 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I+ R+ TQKE+ + ++ +EN + L + + D Sbjct: 2 NIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPID 59 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++++ R++ ++Q E G+ +G+ + T+S++E RT+P+++ + +D+ Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 Query: 172 --IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I E I P N+ S SK+ Sbjct: 61 PSIESATESIEPTLPDEPLVNKKSYSSKQ 89 >gi|291536948|emb|CBL10060.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 198 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G I+ R+A TQKE A + E + +E+G I + NE + + Sbjct: 15 EEIGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQIANELNVPWQE 74 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E + ++ T K + + + Sbjct: 75 LLSPEDNNIPKDNTTTKYPAYEFHTMSDV 103 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R+ + ++Q EF + LG T+ YE G + +I ++I + Sbjct: 19 KAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQIANELNVPWQELLSP 78 Query: 176 DEVIVPKSIKRAK 188 ++ +PK K Sbjct: 79 EDNNIPKDNTTTK 91 >gi|239815237|ref|YP_002944147.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801814|gb|ACS18881.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 31/69 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT+++ +R A + + E+A + S ++ E G+ S S+ L N + ++ Sbjct: 9 IGTQVRALRMAADVSGGELAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPASRLF 68 Query: 92 DGEVIDRRY 100 + + Sbjct: 69 GDQARRTDF 77 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + L IG +++++R +S E K G+ S LS E+G P ++ ++ Sbjct: 1 MRSLSAVRIGTQVRALRMAADVSGGELAKTSGISASMLSRIERGLVSPSVETLERLANGL 60 Query: 166 KKHLDWIYFGDE 177 ++ GD+ Sbjct: 61 GVPASRLF-GDQ 71 >gi|238853357|ref|ZP_04643737.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282852340|ref|ZP_06261682.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|311111561|ref|ZP_07712958.1| transcriptional regulator, XRE family [Lactobacillus gasseri MV-22] gi|238834045|gb|EEQ26302.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282556082|gb|EFB61702.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|311066715|gb|EFQ47055.1| transcriptional regulator, XRE family [Lactobacillus gasseri MV-22] Length = 64 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q +A + +NL EN + S+ L L +E + + ++ Sbjct: 2 NRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLF 59 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK KG+SQ+ K + + T++ E + P + K+ L+ +++ Sbjct: 1 MNRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLFW 60 Query: 175 GDEV 178 +V Sbjct: 61 DGDV 64 >gi|163760476|ref|ZP_02167558.1| hypothetical protein HPDFL43_04196 [Hoeflea phototrophica DFL-43] gi|162282427|gb|EDQ32716.1| hypothetical protein HPDFL43_04196 [Hoeflea phototrophica DFL-43] Length = 116 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 E+ + +RI+ RK T E+A A + ++ ENG + S+ + Sbjct: 46 PSELVHELMETDSRIRTYRKYRGMTGSELAAAAGISQPHLSDIENGKKAGSVDVLKRIAT 105 Query: 82 EYEISFDWIY 91 + D + Sbjct: 106 ALRVDLDDLV 115 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 37/88 (42%) Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 S + + E + E ++ + +R+++ RK +GM+ E G+ LS+ Sbjct: 28 SLEALAIMERVRAGEETWPSELVHELMETDSRIRTYRKYRGMTGSELAAAAGISQPHLSD 87 Query: 146 YEQGRTIPEIKPARKIKQVTKKHLDWIY 173 E G+ + ++I + LD + Sbjct: 88 IENGKKAGSVDVLKRIATALRVDLDDLV 115 >gi|83720757|ref|YP_443247.1| helix-turn-helix domain-containing protein [Burkholderia thailandensis E264] gi|83654582|gb|ABC38645.1| Helix-turn-helix domain protein, putative [Burkholderia thailandensis E264] Length = 115 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + + VG I R+ + TQ+++A A++ E G+ ++ + L + Sbjct: 5 EETRLARRVGKAIARRREESQLTQEDVAEQLGVGNEAISRIERGIVMPTVARLVQLAKVF 64 Query: 84 EISFDWIYD 92 + + + Sbjct: 65 QCNVADLLT 73 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + R++ ++Q + + LG+ N +S E+G +P + ++ +V + ++ + Sbjct: 15 KAIARRREESQLTQEDVAEQLGVGNEAISRIERGIVMPTVARLVQLAKVFQCNVADLLT- 73 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + P R +K S +D+++ Sbjct: 74 EASHRPDDQARHLSQLLTKLSPQDRET 100 >gi|324020380|gb|EGB89599.1| helix-turn-helix protein [Escherichia coli MS 117-3] Length = 153 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 5/128 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K++R A +Q+ A S ++ E G + S+ L + + Sbjct: 9 FGQRVKELRIATGMSQEAFADLCGFARSYLSRIERGGSNASLDAIEVLAEALSVEPWQLL 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + + ++ D L S R + + S E Sbjct: 69 TFDSSEDNDPELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQK-----RFDSFSEALEY 123 Query: 152 IPEIKPAR 159 + ++ A+ Sbjct: 124 LRSMETAK 131 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+K +R GMSQ F L G S LS E+G + + + + + Sbjct: 9 FGQRVKELRIATGMSQEAFADLCGFARSYLSRIERGGSNASLDAIEVLAEALSVEPWQLL 68 Query: 174 FGD--EVIVPKSI 184 D E P+ + Sbjct: 69 TFDSSEDNDPELL 81 >gi|315033824|gb|EFT45756.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0017] Length = 109 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 32 VGTRIKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K +RK+ + TQ++MA ++ +E G + + + + + ++ D++ Sbjct: 2 FANRLKQLRKSKPHLTQQDMANILGVAKTTYASYEQGKRTPDVEIQNKIADYFGVTLDYL 61 Query: 91 YDGEVIDRRYEDVTN 105 + + Sbjct: 62 HGRKSDSASQLTKEQ 76 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 113 AIGARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +RK K ++Q + +LG+ +T ++YEQG+ P+++ KI LD+ Sbjct: 1 MFANRLKQLRKSKPHLTQQDMANILGVAKTTYASYEQGKRTPDVEIQNKIADYFGVTLDY 60 Query: 172 IYFGDEVIVPKSIKR 186 ++ + K Sbjct: 61 LHGRKSDSASQLTKE 75 >gi|256394502|ref|YP_003116066.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360728|gb|ACU74225.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 65 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 23/57 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ +R+ +Q+++ VN E S+ A+ + + + + ++ Sbjct: 5 MRALRQGKGLSQQDLGEALGVSRQTVNAIEQSRYDPSLPLAIRIARYFGTTVEGMFH 61 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++++R+ KG+SQ + G+ LG+ T++ EQ R P + A +I + ++ ++ Sbjct: 1 MRNDMRALRQGKGLSQQDLGEALGVSRQTVNAIEQSRYDPSLPLAIRIARYFGTTVEGMF 60 Query: 174 FGD 176 D Sbjct: 61 HVD 63 >gi|227535271|ref|ZP_03965320.1| hypothetical protein HMPREF0530_2557 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187155|gb|EEI67222.1| hypothetical protein HMPREF0530_2557 [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 192 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G IK +RKA TQK++A +E ++ E G+ + S+ + N ++ + + Sbjct: 38 KIGLHIKQLRKAQRITQKDLAAEIGTIEQTISKIERGVFTLSVETIMQFCNALNVTPNEL 97 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 NK+++ IG +K +RK + ++Q + +G T+S E+G ++ + Sbjct: 30 NKEKIVESKIGLHIKQLRKAQRITQKDLAAEIGTIEQTISKIERGVFTLSVETIMQFCNA 89 Query: 165 TKKHLDWI 172 + + Sbjct: 90 LNVTPNEL 97 >gi|183598411|ref|ZP_02959904.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] gi|188020590|gb|EDU58630.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] Length = 76 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + VG +IK RK N T +E+ + ++ +E+G+ +I + L +++ Sbjct: 10 FNIIVGKKIKRYRKEMNLTAEELGRYIGVSQQQISRYESGVNHINIDFLSQLSELFKVPI 69 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 K +G ++K RK+ ++ E G+ +G+ +S YE G I ++ ++ K Sbjct: 7 KPTFNIIVGKKIKRYRKEMNLTAEELGRYIGVSQQQISRYESGVNHINIDFLSQLSELFK 66 Query: 167 KHLDWIYFGD 176 + D Sbjct: 67 VPIQVFLIED 76 >gi|170760881|ref|YP_001786959.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407870|gb|ACA56281.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 370 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 34/90 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ+++A +AV+ +E+G I + + ++ D + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVTIDTLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ E + + + Sbjct: 66 NFKIELSDEEVMDIFNECEKLFSNGEIHKA 95 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + +RK+K ++Q + +G+ + +S +E G + P+I I Sbjct: 1 MEKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVT 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + + Sbjct: 61 IDTLLNFKIELSDEEV 76 >gi|158424413|ref|YP_001525705.1| XRE family-like protein [Azorhizobium caulinodans ORS 571] gi|158331302|dbj|BAF88787.1| helix-turn-helix XRE-family like protein [Azorhizobium caulinodans ORS 571] Length = 216 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 4/101 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ T +A + ++L E G+ + SI L + ++ ++ Sbjct: 28 LGPNLRQLRQERGMTLDRLAAESALTRGYLSLVERGLKTPSITALLRVATALGVNIAQLF 87 Query: 92 DGEVIDRRYEDVTNKKR----LDPYAIGARLKSIRKDKGMS 128 D +T D L + R K M Sbjct: 88 DLNAAPTARYTLTRHGDARALEDGTFGLMPLAARRARKMMD 128 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R+++GM+ + LS E+G P I ++ ++ ++ Sbjct: 31 NLRQLRQERGMTLDRLAAESALTRGYLSLVERGLKTPSITALLRVATALGVNIAQLF 87 >gi|254252819|ref|ZP_04946137.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158] gi|124895428|gb|EAY69308.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158] Length = 232 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 6/119 (5%) Query: 4 NPFLETSLKSLQEYTLIITPEIR------QYWKDVGTRIKDIRKANNKTQKEMAIGANQL 57 P T+ SL E I+ E + + R++D+R T +A + Sbjct: 9 RPASLTANSSLLENAFIMQEETTPPGGDASINERIARRVRDLRATRGYTLDALAARSGVS 68 Query: 58 ESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 S ++L E S + L +S ++ G+ D + + + A Sbjct: 69 RSMISLVERASASPTAVVLDKLAAGLGVSLAALFSGDRNDTPTLPLVRRAEQAEWRDPA 127 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 33/106 (31%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + I + I R++ +R +G + G+ S +S E+ Sbjct: 19 LLENAFIMQEETTPPGGDASINERIARRVRDLRATRGYTLDALAARSGVSRSMISLVERA 78 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 P K+ L ++ GD P + Q+ + Sbjct: 79 SASPTAVVLDKLAAGLGVSLAALFSGDRNDTPTLPLVRRAEQAEWR 124 >gi|16802848|ref|NP_464333.1| hypothetical protein lmo0806 [Listeria monocytogenes EGD-e] gi|224499672|ref|ZP_03668021.1| hypothetical protein LmonF1_08239 [Listeria monocytogenes Finland 1988] gi|224501890|ref|ZP_03670197.1| hypothetical protein LmonFR_05157 [Listeria monocytogenes FSL R2-561] gi|254830206|ref|ZP_05234861.1| hypothetical protein Lmon1_02557 [Listeria monocytogenes 10403S] gi|254899023|ref|ZP_05258947.1| hypothetical protein LmonJ_04380 [Listeria monocytogenes J0161] gi|254911489|ref|ZP_05261501.1| DNA-binding protein [Listeria monocytogenes J2818] gi|254935815|ref|ZP_05267512.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255026637|ref|ZP_05298623.1| hypothetical protein LmonocytFSL_10420 [Listeria monocytogenes FSL J2-003] gi|284801136|ref|YP_003413001.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578] gi|284994278|ref|YP_003416046.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923] gi|16410195|emb|CAC98884.1| lmo0806 [Listeria monocytogenes EGD-e] gi|258608402|gb|EEW21010.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056698|gb|ADB67639.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578] gi|284059745|gb|ADB70684.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923] gi|293589432|gb|EFF97766.1| DNA-binding protein [Listeria monocytogenes J2818] Length = 180 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|117924139|ref|YP_864756.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117607895|gb|ABK43350.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] Length = 183 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ +R TQ+ +A A + + E + S+ + +S D + Sbjct: 7 GMRIRQLRSQRKLTQQALADMAEIPRATLATVEKDDANPSLAVVYKIARALGLSIDQLLV 66 Query: 93 GEVIDRRYEDVTNKK 107 E + + Sbjct: 67 TERERIQVVPADQMR 81 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G R++ +R + ++Q + +P +TL+ E+ P + KI + Sbjct: 1 MVNNLAGMRIRQLRSQRKLTQQALADMAEIPRATLATVEKDDANPSLAVVYKIARALGLS 60 Query: 169 LDWIY 173 +D + Sbjct: 61 IDQLL 65 >gi|302543174|ref|ZP_07295516.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302460792|gb|EFL23885.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 290 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G ++ +R+ T +E+A +S ++ ENG S S R L Y++ Sbjct: 11 RRRLGQELRRLRQEKGMTAEEVAEELMVSQSKISRLENGRRSISQRDVRDLCRTYKV 67 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R++KGM+ E + L + S +S E GR + R + + K Sbjct: 16 QELRRLRQEKGMTAEEVAEELMVSQSKISRLENGRRSISQRDVRDLCRTYKV-------E 68 Query: 176 DEVIVPKSIKRAKGNQ 191 D+ +V ++ AK ++ Sbjct: 69 DKALVDSLMQMAKESR 84 >gi|316932268|ref|YP_004107250.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599982|gb|ADU42517.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 72 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +R+ TQ+E+ + + ++ E G + ++ L +S Sbjct: 4 RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELSQALGVSHV 63 Query: 89 WIYDGEVI 96 + + Sbjct: 64 ELVQPDDQ 71 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +R++KG++Q E G LS+ E+GR P + ++ Q + D+ Sbjct: 13 RLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELSQALGVSHVELVQPDD 70 >gi|251796863|ref|YP_003011594.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247544489|gb|ACT01508.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 68 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++ RK + Q+E+A + ENG + SI A + + S + ++ Sbjct: 3 NRLEEHRKQHGINQEELAAALEVSRQTIGSLENGRYNPSILLAFRIARFFGKSIEEVFIY 62 Query: 94 EVI 96 E Sbjct: 63 EED 65 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ RK G++Q E L + T+ + E GR P I A +I + K ++ ++ Sbjct: 1 MNNRLEEHRKQHGINQEELAAALEVSRQTIGSLENGRYNPSILLAFRIARFFGKSIEEVF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEED 65 >gi|153816336|ref|ZP_01969004.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] gi|145846297|gb|EDK23215.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] Length = 126 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 6/110 (5%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I+ R TQK++ +S + +E+G + I + + +I + + Sbjct: 6 GDMIRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLLA 65 Query: 93 GEVIDRRYEDVTNKKR------LDPYAIGARLKSIRKDKGMSQIEFGKLL 136 G++I R + D L++ +K + E K + Sbjct: 66 GKIISRDELKEKLSEYGLTHLVPDTEEERTVLENCKKLNETGKKEAAKRV 115 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 37/74 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G ++ R +KG++Q + G+L G+ +S + YE G P+I+ +KI ++ + Sbjct: 4 YTGDMIRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRL 63 Query: 173 YFGDEVIVPKSIKR 186 G + + ++ Sbjct: 64 LAGKIISRDELKEK 77 >gi|158320320|ref|YP_001512827.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140519|gb|ABW18831.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 130 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +RK + + +S ++ EN S + + N E++ D + Sbjct: 3 LGEKIRALRKEKRYSIMNIRELTGLSKSTISEIENDKSSPTAETLQKIANALEVTVDTFF 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + D + A+ LK Sbjct: 63 KDDDHDESLSQQNIEFTTPQEAMEFILKQ 91 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 35/66 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++++RK+K S + +L G+ ST+S E ++ P + +KI + +D Sbjct: 1 MTLGEKIRALRKEKRYSIMNIRELTGLSKSTISEIENDKSSPTAETLQKIANALEVTVDT 60 Query: 172 IYFGDE 177 + D+ Sbjct: 61 FFKDDD 66 >gi|150389675|ref|YP_001319724.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949537|gb|ABR48065.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 197 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I +RK TQK +A V+ +E G+ + L ++I + Sbjct: 5 KIGKLIAKLRKEKKLTQKNIADALGIQNKTVSKWECGLGCPDLSLWPELSAIFDIDIKQM 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 +GE+ D N ++ Y + Sbjct: 65 MEGEITP-NKPDGGNIDKIRFYVCPSC 90 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + +RK+K ++Q LG+ N T+S +E G P++ ++ + Sbjct: 1 MDCVKIGKLIAKLRKEKKLTQKNIADALGIQNKTVSKWECGLGCPDLSLWPELSAIFDID 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 IKQMMEGE 68 >gi|16129260|ref|NP_415815.1| DNA-binding transcriptional repressor for the puu divergon [Escherichia coli str. K-12 substr. MG1655] gi|24112698|ref|NP_707208.1| DNA-binding transcriptional repressor PuuR [Shigella flexneri 2a str. 301] gi|30062819|ref|NP_836990.1| DNA-binding transcriptional repressor PuuR [Shigella flexneri 2a str. 2457T] gi|74312331|ref|YP_310750.1| DNA-binding transcriptional repressor PuuR [Shigella sonnei Ss046] gi|82544245|ref|YP_408192.1| DNA-binding transcriptional repressor PuuR [Shigella boydii Sb227] gi|82777190|ref|YP_403539.1| DNA-binding transcriptional repressor PuuR [Shigella dysenteriae Sd197] gi|89108145|ref|AP_001925.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. W3110] gi|157158238|ref|YP_001462606.1| DNA-binding transcriptional repressor PuuR [Escherichia coli E24377A] gi|157160810|ref|YP_001458128.1| DNA-binding transcriptional repressor PuuR [Escherichia coli HS] gi|170020334|ref|YP_001725288.1| DNA-binding transcriptional repressor PuuR [Escherichia coli ATCC 8739] gi|170080978|ref|YP_001730298.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170680966|ref|YP_001743877.1| DNA-binding transcriptional repressor PuuR [Escherichia coli SMS-3-5] gi|170768785|ref|ZP_02903238.1| transcriptional regulator PuuR [Escherichia albertii TW07627] gi|187731345|ref|YP_001880138.1| DNA-binding transcriptional repressor PuuR [Shigella boydii CDC 3083-94] gi|188493518|ref|ZP_03000788.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|191165095|ref|ZP_03026939.1| transcriptional regulator PuuR [Escherichia coli B7A] gi|193062757|ref|ZP_03043851.1| transcriptional regulator PuuR [Escherichia coli E22] gi|194425904|ref|ZP_03058460.1| transcriptional regulator PuuR [Escherichia coli B171] gi|194437065|ref|ZP_03069164.1| transcriptional regulator PuuR [Escherichia coli 101-1] gi|209918542|ref|YP_002292626.1| DNA-binding transcriptional repressor PuuR [Escherichia coli SE11] gi|218553857|ref|YP_002386770.1| DNA-binding transcriptional repressor PuuR [Escherichia coli IAI1] gi|218694875|ref|YP_002402542.1| DNA-binding transcriptional repressor PuuR [Escherichia coli 55989] gi|218700021|ref|YP_002407650.1| DNA-binding transcriptional repressor PuuR [Escherichia coli IAI39] gi|218704829|ref|YP_002412348.1| DNA-binding transcriptional repressor PuuR [Escherichia coli UMN026] gi|238900535|ref|YP_002926331.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|253773699|ref|YP_003036530.1| DNA-binding transcriptional repressor PuuR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161379|ref|YP_003044487.1| DNA-binding transcriptional repressor PuuR [Escherichia coli B str. REL606] gi|256018450|ref|ZP_05432315.1| DNA-binding transcriptional repressor PuuR [Shigella sp. D9] gi|256022988|ref|ZP_05436853.1| DNA-binding transcriptional repressor PuuR [Escherichia sp. 4_1_40B] gi|260843648|ref|YP_003221426.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O103:H2 str. 12009] gi|260854998|ref|YP_003228889.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O26:H11 str. 11368] gi|260867748|ref|YP_003234150.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O111:H- str. 11128] gi|293404842|ref|ZP_06648834.1| transcriptional regulator [Escherichia coli FVEC1412] gi|293409702|ref|ZP_06653278.1| HTH-type transcriptional regulator puuR [Escherichia coli B354] gi|293414636|ref|ZP_06657285.1| putrescine utilization regulator [Escherichia coli B185] gi|293433661|ref|ZP_06662089.1| HTH-type transcriptional regulator puuR [Escherichia coli B088] gi|297516524|ref|ZP_06934910.1| DNA-binding transcriptional repressor PuuR [Escherichia coli OP50] gi|298380485|ref|ZP_06990084.1| DNA-binding transcriptional repressor PuuR [Escherichia coli FVEC1302] gi|300818983|ref|ZP_07099187.1| cupin domain protein [Escherichia coli MS 107-1] gi|300822532|ref|ZP_07102671.1| cupin domain protein [Escherichia coli MS 119-7] gi|300897366|ref|ZP_07115793.1| cupin domain protein [Escherichia coli MS 198-1] gi|300904951|ref|ZP_07122769.1| cupin domain protein [Escherichia coli MS 84-1] gi|300919489|ref|ZP_07135988.1| cupin domain protein [Escherichia coli MS 115-1] gi|300926689|ref|ZP_07142464.1| cupin domain protein [Escherichia coli MS 182-1] gi|300927813|ref|ZP_07143375.1| cupin domain protein [Escherichia coli MS 187-1] gi|300935406|ref|ZP_07150404.1| cupin domain protein [Escherichia coli MS 21-1] gi|300948384|ref|ZP_07162487.1| cupin domain protein [Escherichia coli MS 116-1] gi|300954551|ref|ZP_07166997.1| cupin domain protein [Escherichia coli MS 175-1] gi|301017611|ref|ZP_07182285.1| cupin domain protein [Escherichia coli MS 69-1] gi|301022735|ref|ZP_07186583.1| cupin domain protein [Escherichia coli MS 196-1] gi|301304353|ref|ZP_07210466.1| cupin domain protein [Escherichia coli MS 124-1] gi|301326966|ref|ZP_07220258.1| cupin domain protein [Escherichia coli MS 78-1] gi|301647199|ref|ZP_07247020.1| cupin domain protein [Escherichia coli MS 146-1] gi|307137942|ref|ZP_07497298.1| DNA-binding transcriptional repressor PuuR [Escherichia coli H736] gi|307309944|ref|ZP_07589594.1| transcriptional regulator, XRE family [Escherichia coli W] gi|309788300|ref|ZP_07682904.1| helix-turn-helix family protein [Shigella dysenteriae 1617] gi|309796914|ref|ZP_07691315.1| cupin domain protein [Escherichia coli MS 145-7] gi|312971493|ref|ZP_07785668.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|331641864|ref|ZP_08342999.1| HTH-type transcriptional regulator PuuR [Escherichia coli H736] gi|331652348|ref|ZP_08353367.1| HTH-type transcriptional regulator PuuR [Escherichia coli M718] gi|331662718|ref|ZP_08363641.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA143] gi|331667689|ref|ZP_08368553.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA271] gi|331672830|ref|ZP_08373616.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA280] gi|331682793|ref|ZP_08383412.1| HTH-type transcriptional regulator PuuR [Escherichia coli H299] gi|332279502|ref|ZP_08391915.1| transcriptional regulator PuuR [Shigella sp. D9] gi|71164830|sp|P0A9U6|PUUR_ECOLI RecName: Full=HTH-type transcriptional regulator puuR gi|71164831|sp|P0A9U7|PUUR_SHIFL RecName: Full=HTH-type transcriptional regulator puuR gi|1742129|dbj|BAA14868.1| DNA-binding transcriptional repressor [Escherichia coli str. K12 substr. W3110] gi|1787557|gb|AAC74381.1| DNA-binding transcriptional repressor for the puu divergon [Escherichia coli str. K-12 substr. MG1655] gi|24051617|gb|AAN42915.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041067|gb|AAP16797.1| hypothetical protein S1386 [Shigella flexneri 2a str. 2457T] gi|58197515|dbj|BAD88707.1| transcriptional repressor [Escherichia coli K-12] gi|73855808|gb|AAZ88515.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81241338|gb|ABB62048.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81245656|gb|ABB66364.1| conserved hypothetical protein [Shigella boydii Sb227] gi|157066490|gb|ABV05745.1| transcriptional regulator PuuR [Escherichia coli HS] gi|157080268|gb|ABV19976.1| transcriptional regulator PuuR [Escherichia coli E24377A] gi|169755262|gb|ACA77961.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169888813|gb|ACB02520.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170122333|gb|EDS91264.1| transcriptional regulator PuuR [Escherichia albertii TW07627] gi|170518684|gb|ACB16862.1| transcriptional regulator PuuR [Escherichia coli SMS-3-5] gi|187428337|gb|ACD07611.1| transcriptional regulator PuuR [Shigella boydii CDC 3083-94] gi|188488717|gb|EDU63820.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|190904867|gb|EDV64572.1| transcriptional regulator PuuR [Escherichia coli B7A] gi|192931879|gb|EDV84479.1| transcriptional regulator PuuR [Escherichia coli E22] gi|194415959|gb|EDX32225.1| transcriptional regulator PuuR [Escherichia coli B171] gi|194424048|gb|EDX40036.1| transcriptional regulator PuuR [Escherichia coli 101-1] gi|209911801|dbj|BAG76875.1| conserved hypothetical protein [Escherichia coli SE11] gi|218351607|emb|CAU97319.1| DNA-binding transcriptional repressor [Escherichia coli 55989] gi|218360625|emb|CAQ98183.1| DNA-binding transcriptional repressor [Escherichia coli IAI1] gi|218370007|emb|CAR17781.1| DNA-binding transcriptional repressor [Escherichia coli IAI39] gi|218431926|emb|CAR12811.1| DNA-binding transcriptional repressor [Escherichia coli UMN026] gi|238860975|gb|ACR62973.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|242377078|emb|CAQ31804.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)] gi|253324743|gb|ACT29345.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973280|gb|ACT38951.1| DNA-binding transcriptional repressor [Escherichia coli B str. REL606] gi|253977494|gb|ACT43164.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)] gi|257753647|dbj|BAI25149.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O26:H11 str. 11368] gi|257758795|dbj|BAI30292.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O103:H2 str. 12009] gi|257764104|dbj|BAI35599.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O111:H- str. 11128] gi|260449568|gb|ACX39990.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|281600723|gb|ADA73707.1| HTH-type transcriptional regulator puuR [Shigella flexneri 2002017] gi|284921184|emb|CBG34250.1| transcriptional regulator of the polyamine metabolism genes [Escherichia coli 042] gi|291324480|gb|EFE63902.1| HTH-type transcriptional regulator puuR [Escherichia coli B088] gi|291427050|gb|EFF00077.1| transcriptional regulator [Escherichia coli FVEC1412] gi|291434694|gb|EFF07667.1| putrescine utilization regulator [Escherichia coli B185] gi|291470170|gb|EFF12654.1| HTH-type transcriptional regulator puuR [Escherichia coli B354] gi|298277927|gb|EFI19441.1| DNA-binding transcriptional repressor PuuR [Escherichia coli FVEC1302] gi|299881132|gb|EFI89343.1| cupin domain protein [Escherichia coli MS 196-1] gi|300318461|gb|EFJ68245.1| cupin domain protein [Escherichia coli MS 175-1] gi|300358850|gb|EFJ74720.1| cupin domain protein [Escherichia coli MS 198-1] gi|300400105|gb|EFJ83643.1| cupin domain protein [Escherichia coli MS 69-1] gi|300403100|gb|EFJ86638.1| cupin domain protein [Escherichia coli MS 84-1] gi|300413443|gb|EFJ96753.1| cupin domain protein [Escherichia coli MS 115-1] gi|300417265|gb|EFK00576.1| cupin domain protein [Escherichia coli MS 182-1] gi|300452059|gb|EFK15679.1| cupin domain protein [Escherichia coli MS 116-1] gi|300459384|gb|EFK22877.1| cupin domain protein [Escherichia coli MS 21-1] gi|300464098|gb|EFK27591.1| cupin domain protein [Escherichia coli MS 187-1] gi|300524948|gb|EFK46017.1| cupin domain protein [Escherichia coli MS 119-7] gi|300528444|gb|EFK49506.1| cupin domain protein [Escherichia coli MS 107-1] gi|300840340|gb|EFK68100.1| cupin domain protein [Escherichia coli MS 124-1] gi|300846437|gb|EFK74197.1| cupin domain protein [Escherichia coli MS 78-1] gi|301074685|gb|EFK89491.1| cupin domain protein [Escherichia coli MS 146-1] gi|306909662|gb|EFN40156.1| transcriptional regulator, XRE family [Escherichia coli W] gi|308119442|gb|EFO56704.1| cupin domain protein [Escherichia coli MS 145-7] gi|308923682|gb|EFP69185.1| helix-turn-helix family protein [Shigella dysenteriae 1617] gi|309701599|emb|CBJ00906.1| transcriptional regulator of the polyamine metabolism genes [Escherichia coli ETEC H10407] gi|310336090|gb|EFQ01290.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|313649492|gb|EFS13923.1| helix-turn-helix family protein [Shigella flexneri 2a str. 2457T] gi|315060554|gb|ADT74881.1| DNA-binding transcriptional repressor [Escherichia coli W] gi|315135938|dbj|BAJ43097.1| transcriptional regulator [Escherichia coli DH1] gi|315254342|gb|EFU34310.1| cupin domain protein [Escherichia coli MS 85-1] gi|315619382|gb|EFU99926.1| helix-turn-helix family protein [Escherichia coli 3431] gi|320180265|gb|EFW55200.1| Putrescine utilization regulator [Shigella boydii ATCC 9905] gi|320187693|gb|EFW62369.1| Putrescine utilization regulator [Shigella flexneri CDC 796-83] gi|320199337|gb|EFW73928.1| Putrescine utilization regulator [Escherichia coli EC4100B] gi|323153351|gb|EFZ39608.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|323162336|gb|EFZ48191.1| helix-turn-helix family protein [Escherichia coli E128010] gi|323168281|gb|EFZ53966.1| helix-turn-helix family protein [Shigella sonnei 53G] gi|323172339|gb|EFZ57976.1| helix-turn-helix family protein [Escherichia coli LT-68] gi|323179742|gb|EFZ65303.1| helix-turn-helix family protein [Escherichia coli 1180] gi|323185537|gb|EFZ70898.1| helix-turn-helix family protein [Escherichia coli 1357] gi|323378885|gb|ADX51153.1| Cupin 2 conserved barrel domain protein [Escherichia coli KO11] gi|323937624|gb|EGB33892.1| cupin domain-containing protein [Escherichia coli E1520] gi|323942417|gb|EGB38587.1| cupin domain-containing protein [Escherichia coli E482] gi|323947750|gb|EGB43753.1| cupin domain-containing protein [Escherichia coli H120] gi|323962457|gb|EGB58039.1| cupin domain-containing protein [Escherichia coli H489] gi|323964563|gb|EGB60037.1| cupin domain-containing protein [Escherichia coli M863] gi|323973458|gb|EGB68644.1| cupin domain-containing protein [Escherichia coli TA007] gi|323977066|gb|EGB72153.1| cupin domain-containing protein [Escherichia coli TW10509] gi|324117506|gb|EGC11412.1| cupin domain-containing protein [Escherichia coli E1167] gi|327253996|gb|EGE65625.1| helix-turn-helix family protein [Escherichia coli STEC_7v] gi|331038662|gb|EGI10882.1| HTH-type transcriptional regulator PuuR [Escherichia coli H736] gi|331050626|gb|EGI22684.1| HTH-type transcriptional regulator PuuR [Escherichia coli M718] gi|331061140|gb|EGI33104.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA143] gi|331065274|gb|EGI37169.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA271] gi|331070051|gb|EGI41420.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA280] gi|331080424|gb|EGI51603.1| HTH-type transcriptional regulator PuuR [Escherichia coli H299] gi|332091697|gb|EGI96777.1| helix-turn-helix family protein [Shigella boydii 5216-82] gi|332094835|gb|EGI99879.1| helix-turn-helix family protein [Shigella boydii 3594-74] gi|332101854|gb|EGJ05200.1| transcriptional regulator PuuR [Shigella sp. D9] gi|332342898|gb|AEE56232.1| DNA-binding transcriptional repressor PuuR [Escherichia coli UMNK88] gi|332757959|gb|EGJ88286.1| helix-turn-helix family protein [Shigella flexneri 4343-70] gi|332759548|gb|EGJ89856.1| helix-turn-helix family protein [Shigella flexneri 2747-71] gi|332760399|gb|EGJ90689.1| helix-turn-helix family protein [Shigella flexneri K-671] gi|332767540|gb|EGJ97734.1| DNA-binding transcriptional repressor [Shigella flexneri 2930-71] gi|333005778|gb|EGK25296.1| helix-turn-helix family protein [Shigella flexneri K-218] gi|333007643|gb|EGK27121.1| helix-turn-helix family protein [Shigella flexneri K-272] gi|333019110|gb|EGK38400.1| helix-turn-helix family protein [Shigella flexneri K-304] gi|333019578|gb|EGK38858.1| helix-turn-helix family protein [Shigella flexneri K-227] Length = 185 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRLDPY 112 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDLIEM 88 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ +G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 66 FFSEPEKPDEPQV 78 >gi|330990791|ref|ZP_08314747.1| hypothetical protein SXCC_00701 [Gluconacetobacter sp. SXCC-1] gi|329762231|gb|EGG78719.1| hypothetical protein SXCC_00701 [Gluconacetobacter sp. SXCC-1] Length = 260 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 62/208 (29%), Gaps = 60/208 (28%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q +KD+G I D R A + TQ +A A S + E G S+ L +EI Sbjct: 11 QLYKDIGEIIYDRRTALDWTQVHLAKLARLNVSVIRSIEAGR-PVSLETLSALLRVFEID 69 Query: 87 F----------------------------------DW---------IYDGEVIDRRYEDV 103 D+ I ++ Sbjct: 70 PRDILPQGAPEGTWFAHLDLAASATQLKKTMKQCSDYNLAIQKLRDIIGNISKTFNLPEI 129 Query: 104 TNKKRLDPYA----------------IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + +D Y+ G R++ R +G + + + ++LS E Sbjct: 130 PARLPIDHYSHSVAFTSGERQDLLEIFGRRIQIFRTLQGATASQIAHKSHVSLTSLSLIE 189 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFG 175 G P ++ +I + + ++ G Sbjct: 190 AGLRNPSLETVYRIAEGLSVSVYYLIPG 217 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 32/72 (44%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + E + + G RI+ R T ++A ++ ++++L E G+ + S+ + Sbjct: 146 SGERQDLLEIFGRRIQIFRTLQGATASQIAHKSHVSLTSLSLIEAGLRNPSLETVYRIAE 205 Query: 82 EYEISFDWIYDG 93 +S ++ G Sbjct: 206 GLSVSVYYLIPG 217 >gi|325979442|ref|YP_004289158.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179370|emb|CBZ49414.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 119 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +RK TQ+++A +++ + +E G+ + L + +S D++ G Sbjct: 4 ERLKKLRKEAGLTQQQVAKKLRVGQNSYSNWEKGIRTPIFPTIEKLAELFNVSTDYL-TG 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + + +K + Sbjct: 63 KTDIKEKNENNSIETTANVLFRTTVKDL 90 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK +RK+ G++Q + K L + ++ SN+E+G P K+ ++ D++ Sbjct: 1 MFPERLKKLRKEAGLTQQQVAKKLRVGQNSYSNWEKGIRTPIFPTIEKLAELFNVSTDYL 60 Query: 173 YFGDEVIVPKSIKRA 187 G I K+ + Sbjct: 61 -TGKTDIKEKNENNS 74 >gi|302387526|ref|YP_003823348.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198154|gb|ADL05725.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 195 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG+ I+ +R ++ TQK++A N + V+ +E GM I L EI + Sbjct: 5 KVGSIIRALRLEHSMTQKQLADKMNLSDKTVSKWERGMGLPDISLIPELSRILEIDIMHL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 G++ N K + Sbjct: 65 LSGDMTP-NNFTGGNMKNTKYFVCPTC 90 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 37/68 (54%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+ ++++R + M+Q + + + + T+S +E+G +P+I ++ ++ + Sbjct: 1 MQNNKVGSIIRALRLEHSMTQKQLADKMNLSDKTVSKWERGMGLPDISLIPELSRILEID 60 Query: 169 LDWIYFGD 176 + + GD Sbjct: 61 IMHLLSGD 68 >gi|118444959|ref|YP_878922.1| transcriptional regulator [Clostridium novyi NT] gi|118135415|gb|ABK62459.1| transcriptional regulator, putative [Clostridium novyi NT] Length = 212 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ T+IK R N +Q+E+A ++ +EN I L L + + IS D + Sbjct: 19 NLHTQIKKYRTNLNLSQEELAEKVYVTRQTISNWENNKSYPDIHSLLLLSSLFNISLDQL 78 Query: 91 YDGEVIDRRYEDVTNK 106 G++ + + ++ Sbjct: 79 IKGDIKIMKEQINKSE 94 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 46/100 (46%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 +I E K + + ++K R + +SQ E + + + T+SN+E ++ P+ Sbjct: 1 MITLDQEKQKQHKGGNVLNLHTQIKKYRTNLNLSQEELAEKVYVTRQTISNWENNKSYPD 60 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSK 194 I + + LD + GD I+ + I +++ + ++ Sbjct: 61 IHSLLLLSSLFNISLDQLIKGDIKIMKEQINKSELEKFNR 100 >gi|77414341|ref|ZP_00790498.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77159633|gb|EAO70787.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 68 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK++R K SQ E + L + T N+E+G T P + A +I + LD I Sbjct: 1 MTKMTLKALRATKNWSQEEAARALKVSKDTWGNWERGNTEPSVTKAYQIAYIFDISLDDI 60 Query: 173 YF 174 F Sbjct: 61 IF 62 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K +R N +Q+E A + +E G S+ A + ++IS D I Sbjct: 6 LKALRATKNWSQEEAARALKVSKDTWGNWERGNTEPSVTKAYQIAYIFDISLDDIIF 62 >gi|118579884|ref|YP_901134.1| molybdate metabolism transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502594|gb|ABK99076.1| transcriptional regulator of molybdate metabolism, XRE family [Pelobacter propionicus DSM 2379] Length = 368 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK R+ +Q+E+A A + V+ E G S AL L + + ++ Sbjct: 26 LSNHIKKFREERGWSQQELAERAGLSRAGVSAIETGKLVPSTVAALALAKVFACPVEELF 85 Query: 92 D 92 Sbjct: 86 Q 86 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R+++G SQ E + G+ + +S E G+ +P A + +V ++ ++ Sbjct: 28 NHIKKFREERGWSQQELAERAGLSRAGVSAIETGKLVPSTVAALALAKVFACPVEELF 85 >gi|332202990|gb|EGJ17058.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 164 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 3/91 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +RK NN TQ+E+A + +ENG A L + + +S + Sbjct: 2 NRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLLGY 61 Query: 94 EVIDRRYEDVTN---KKRLDPYAIGARLKSI 121 + + L + ++K Sbjct: 62 SDLIADTDSDIKAMAYSHLLTFVDEKQIKEF 92 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +RK+ ++Q E +P T+ +E G T + A+ + + + Sbjct: 1 MNRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLLG 60 Query: 175 GDEVIVP 181 ++I Sbjct: 61 YSDLIAD 67 >gi|324327069|gb|ADY22329.1| ans operon repressor protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 125 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Query: 174 FGDEVIVP 181 E P Sbjct: 61 GRIEHSHP 68 >gi|325103942|ref|YP_004273596.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] gi|324972790|gb|ADY51774.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] Length = 257 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 26/73 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +RK TQ++ A S V +E + +EIS D Sbjct: 4 ISDNLKYLRKKKGLTQQQFADVMEIKRSLVGAYEEDRAEPKYDLLKKIAEYFEISIDDFI 63 Query: 92 DGEVIDRRYEDVT 104 + ++ D+ Sbjct: 64 NEKINDKWSPKPK 76 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK +RK KG++Q +F ++ + S + YE+ R P+ +KI + + +D + Sbjct: 7 NLKYLRKKKGLTQQQFADVMEIKRSLVGAYEEDRAEPKYDLLKKIAEYFEISIDDFI--N 64 Query: 177 EVIVPKSIKRAKGNQSSKK 195 E I K + KG+ S+ + Sbjct: 65 EKINDKWSPKPKGDPSNLR 83 >gi|259418297|ref|ZP_05742215.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259345692|gb|EEW57536.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 190 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 12/120 (10%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R++ +R+ + +Q+ +A S ++L E+G + S+ + + IS Sbjct: 12 ELGQRLRAVREQSGVSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGVPISLSEF 71 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + E + + L I K K + L G + YE Sbjct: 72 FAFEPELEKTS----------FYAAEDLTEIGKGKLSLKQVGANLFG--RQMMILYETYE 119 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 41/90 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G RL+++R+ G+SQ K G+PNST+S E G+ P + R+I L Sbjct: 11 YELGQRLRAVREQSGVSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGVPISLSE 70 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + + S A+ K K K Sbjct: 71 FFAFEPELEKTSFYAAEDLTEIGKGKLSLK 100 >gi|228988848|ref|ZP_04148902.1| hypothetical protein bthur0001_54830 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770876|gb|EEM19387.1| hypothetical protein bthur0001_54830 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 128 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 6 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 63 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D Sbjct: 1 MRRMLERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVD 60 Query: 171 WIY 173 +I Sbjct: 61 YIL 63 >gi|206889754|ref|YP_002249639.1| helix-turn-helix domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741692|gb|ACI20749.1| helix-turn-helix domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 419 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++++IR + N +QKE+A N ++ EN + SI + + + + I Sbjct: 246 DIGNKLREIRISRNISQKELAEKVNLTPGFISQMENNQIAPSIVSFMQICDALGVKASEI 305 Query: 91 YDGEVIDRRYEDVTNK 106 + + ++ Sbjct: 306 LNETKTEEKFLIKKKD 321 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 EV D + ++ IG +L+ IR + +SQ E + + + +S E + P Sbjct: 227 EVTDNDEIHIKATEQTLVLDIGNKLREIRISRNISQKELAEKVNLTPGFISQMENNQIAP 286 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAK 188 I +I I + IK+ Sbjct: 287 SIVSFMQICDALGVKASEILNETKTEEKFLIKKKD 321 >gi|197287327|ref|YP_002153199.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227356988|ref|ZP_03841360.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194684814|emb|CAR46896.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227162866|gb|EEI47825.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 192 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 34/86 (39%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ + +G ++K +R++ N + E++ + ++A++ E+G + I + Sbjct: 7 KKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIAIALGF 66 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDP 111 ++ + + D Sbjct: 67 PLGDLFSFTREEYPRLERHKPIVGDY 92 Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K +R+ + +S E + G+ + LS E G + P I I L ++ Sbjct: 15 NKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIAIALGFPLGDLFSF 74 Query: 176 DEVIVPKSIK 185 P+ + Sbjct: 75 TREEYPRLER 84 >gi|88854610|ref|ZP_01129277.1| predicted transcription regulator, containing DNA-binding HTH domain [marine actinobacterium PHSC20C1] gi|88816418|gb|EAR26273.1| predicted transcription regulator, containing DNA-binding HTH domain [marine actinobacterium PHSC20C1] Length = 73 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V I+ +R+A TQ E+A + E G S ++ A + + D + Sbjct: 6 KVTNNIRALREAEGLTQAELARRIGVTRQTLIAIEQGRYSPTLELAFQISRNFGTGLDDV 65 Query: 91 YD 92 + Sbjct: 66 FH 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R+ +G++Q E + +G+ TL EQGR P ++ A +I + LD ++ Sbjct: 8 TNNIRALREAEGLTQAELARRIGVTRQTLIAIEQGRYSPTLELAFQISRNFGTGLDDVF 66 >gi|89893310|ref|YP_516797.1| hypothetical protein DSY0564 [Desulfitobacterium hafniense Y51] gi|219666581|ref|YP_002457016.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332758|dbj|BAE82353.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536841|gb|ACL18580.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 70 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI+DIR+ ++ TQ+++A +S + +E G + + L Y+ S D++ Sbjct: 4 RIRDIREDHDLTQQQVAKYLRCDQSLYSKYERGERDVPLNVMIKLAKFYKTSIDYLVGLT 63 Query: 95 VIDRRY 100 R Y Sbjct: 64 ENKRPY 69 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ IR+D ++Q + K L S S YE+G + K+ + K +D++ E Sbjct: 5 IRDIREDHDLTQQQVAKYLRCDQSLYSKYERGERDVPLNVMIKLAKFYKTSIDYLVGLTE 64 Query: 178 VIVP 181 P Sbjct: 65 NKRP 68 >gi|328947447|ref|YP_004364784.1| hypothetical protein Tresu_0542 [Treponema succinifaciens DSM 2489] gi|328447771|gb|AEB13487.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 71 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T E + D G R++ +R +Q++ A + V+ E G + S L + Sbjct: 1 MTTEEQDILSDFGNRLRKLRIEKGFSQEKFADLTQLDRTYVSGLERGKRNPSYLILLKIA 60 Query: 81 NEYEISFDWIY 91 IS ++ Sbjct: 61 KSLNISVKDLF 71 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G RL+ +R +KG SQ +F L + + +S E+G+ P KI + + ++ Sbjct: 12 FGNRLRKLRIEKGFSQEKFADLTQLDRTYVSGLERGKRNPSYLILLKIAKSLNISVKDLF 71 >gi|171779415|ref|ZP_02920379.1| hypothetical protein STRINF_01260 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282032|gb|EDT47463.1| hypothetical protein STRINF_01260 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 226 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 32/86 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++K +R+ N +Q ++A ++ +ENG + + L +++ + Sbjct: 4 GEKLKALRQENGYSQADLAKRLQISRASYFNWENGKTKPNQKNLGQLSQIFKVDETYFLS 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL 118 I Y + RL L Sbjct: 64 EHDIVNTYLQLNPDNRLKLENYAKNL 89 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK++R++ G SQ + K L + ++ N+E G+T P K ++ Q+ K + Sbjct: 1 MFSGEKLKALRQENGYSQADLAKRLQISRASYFNWENGKTKPNQKNLGQLSQIFKVDETY 60 Query: 172 IYFGDEVI 179 +++ Sbjct: 61 FLSEHDIV 68 >gi|167748986|ref|ZP_02421113.1| hypothetical protein ANACAC_03767 [Anaerostipes caccae DSM 14662] gi|167651608|gb|EDR95737.1| hypothetical protein ANACAC_03767 [Anaerostipes caccae DSM 14662] Length = 371 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + RK TQ ++A +++V+ +E G I + L + +S D + Sbjct: 7 NLSNILVKKRKEKGITQDQLAAYIGVSKASVSKWETGQSYPDITFLPQLAANFNMSVDEL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + + + RL K Sbjct: 67 IGYKPQMTKEDIRKLYLRLAKDFSQKPAKE 96 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 42/96 (43%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + + L RK+KG++Q + +G+ +++S +E G++ P+I ++ Sbjct: 1 MNMKELNLSNILVKKRKEKGITQDQLAAYIGVSKASVSKWETGQSYPDITFLPQLAANFN 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 +D + + + I++ + S+K K Sbjct: 61 MSVDELIGYKPQMTKEDIRKLYLRLAKDFSQKPAKE 96 >gi|163848207|ref|YP_001636251.1| helix-turn-helix domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526115|ref|YP_002570586.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669496|gb|ABY35862.1| helix-turn-helix domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449994|gb|ACM54260.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 181 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I +R+ T +E++ G+ S ++ E + S+ L + + + Sbjct: 3 LGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTHFF 62 Query: 92 DGEVI 96 +GE Sbjct: 63 EGEDD 67 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 33/69 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ +R+++G++ E + G+ S LS E+ + + RK+ Q + Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTH 60 Query: 172 IYFGDEVIV 180 + G++ Sbjct: 61 FFEGEDDQQ 69 >gi|157150600|ref|YP_001449787.1| DNA-binding protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075394|gb|ABV10077.1| DNA-binding protein [Streptococcus gordonii str. Challis substr. CH1] Length = 70 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R ++ TQ ++A + L E G + S+ L + + D ++ Sbjct: 12 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 68 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R + M+Q + +G+ T+ E G+ P + I + K LD Sbjct: 7 MAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQ 66 Query: 172 IYFG 175 +++ Sbjct: 67 LFWE 70 >gi|330974040|gb|EGH74106.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 114 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G +IK +RK+ +Q ++A V+ +E G I + + + Sbjct: 1 METLRSVIGAKIKTLRKSTTMSQADLAELIGCDAPLVSRYERGTTLPGIEQLIRIATVFN 60 Query: 85 ISFDWIYDG 93 ++ + G Sbjct: 61 VAPGELLPG 69 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 44/87 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IGA++K++RK MSQ + +L+G +S YE+G T+P I+ +I V + Sbjct: 7 VIGAKIKTLRKSTTMSQADLAELIGCDAPLVSRYERGTTLPGIEQLIRIATVFNVAPGEL 66 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 G + + + + + + + ++ D Sbjct: 67 LPGGQDQLRTRLISLRQDITERIAEVD 93 >gi|331089018|ref|ZP_08337925.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406470|gb|EGG85983.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] Length = 126 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 6/110 (5%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I+ R TQK++ +S + +E+G + I + + +I + + Sbjct: 6 GDMIRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLLA 65 Query: 93 GEVIDRRYEDVTNKKR------LDPYAIGARLKSIRKDKGMSQIEFGKLL 136 G++I R + D L++ +K + E K + Sbjct: 66 GKIISRDELKEKLSEYGLTHLVPDTEEERTVLENCKKLNETGKKEAAKRV 115 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 37/74 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G ++ R +KG++Q + G+L G+ +S + YE G P+I+ +KI ++ + Sbjct: 4 YTGDMIRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRL 63 Query: 173 YFGDEVIVPKSIKR 186 G + + ++ Sbjct: 64 LAGKIISRDELKEK 77 >gi|331091796|ref|ZP_08340628.1| hypothetical protein HMPREF9477_01271 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402695|gb|EGG82262.1| hypothetical protein HMPREF9477_01271 [Lachnospiraceae bacterium 2_1_46FAA] Length = 77 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+KD+R ++ TQ+ MA +E+G+ + I Y + + Y S D++ + Sbjct: 4 KRLKDLRTDHDLTQENMADILKCHREVYRRYESGIRTIPIDYLVTIAKYYNTSTDYLLEL 63 Query: 94 EVIDRRYEDVTNKK 107 + Y K Sbjct: 64 TDVKTPYPPTKKKS 77 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 25/77 (32%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK +R D ++Q +L YE G I I + D++ Sbjct: 1 MYLKRLKDLRTDHDLTQENMADILKCHREVYRRYESGIRTIPIDYLVTIAKYYNTSTDYL 60 Query: 173 YFGDEVIVPKSIKRAKG 189 +V P + K Sbjct: 61 LELTDVKTPYPPTKKKS 77 >gi|313575261|emb|CBI71200.1| hypothetical protein [uncultured bacterium] Length = 75 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I+ +R + TQ+E+A + E S S+ A + + + + Sbjct: 6 ISNSIRRLRFDHGEMTQQELADRIGMTRQTIAAIEQNKYSPSLEAAFRIAEVFGVPIGDV 65 Query: 91 YDGEVI 96 + + Sbjct: 66 FQWKAD 71 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 109 LDPYAIGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + I ++ +R D G M+Q E +GM T++ EQ + P ++ A +I +V Sbjct: 1 MAAPPISNSIRRLRFDHGEMTQQELADRIGMTRQTIAAIEQNKYSPSLEAAFRIAEVFGV 60 Query: 168 HLDWIY 173 + ++ Sbjct: 61 PIGDVF 66 >gi|295093563|emb|CBK82654.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 298 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I + RK TQ+++A + + +V+ +E G+C + + L EIS + Sbjct: 5 KIGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGICLPDVSVYMELCEILEISVNEF 64 Query: 91 YDGEVIDRRYEDVTNKKRL 109 GE I + + L Sbjct: 65 LAGEDISEDSVREKSDETL 83 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG + RK ++Q + LG + ++S +E+G +P++ ++ ++ + Sbjct: 1 MDIAKIGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGICLPDVSVYMELCEILEIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN--QSSKKSKKDKK 201 ++ G+++ +++ Q SK+ K +K Sbjct: 61 VNEFLAGEDISEDSVREKSDETLLQVSKEGKNKQK 95 >gi|289579039|ref|YP_003477666.1| helix-turn-helix domain protein [Thermoanaerobacter italicus Ab9] gi|297545244|ref|YP_003677546.1| helix-turn-helix domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528752|gb|ADD03104.1| helix-turn-helix domain protein [Thermoanaerobacter italicus Ab9] gi|296843019|gb|ADH61535.1| helix-turn-helix domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 132 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 32/75 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK RK NN T ++ ++ EN S + L+N +S DW+ Sbjct: 4 VGERIKYARKKNNLTITALSKLTGLSVGNLSDLENNKSMPSSNALIKLKNALNVSIDWLL 63 Query: 92 DGEVIDRRYEDVTNK 106 G+ I+ E+ Sbjct: 64 TGQQIEYVKEEEAKY 78 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K RK ++ KL G+ LS+ E +++P K+K +DW+ G Sbjct: 6 ERIKYARKKNNLTITALSKLTGLSVGNLSDLENNKSMPSSNALIKLKNALNVSIDWLLTG 65 Query: 176 D--EVIVPKSIKRAKGNQSSKKSKKDK 200 E + + K + S+KDK Sbjct: 66 QQIEYVKEEEAKYLSREEFENISEKDK 92 >gi|255103192|ref|ZP_05332169.1| putative prophage LambdaCh01, repressor protein [Clostridium difficile QCD-63q42] Length = 103 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 28/76 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++RK + +++ + +E + L N Y +S D+I Sbjct: 2 NRLRELRKEKGYSTQQVGELLGVHYVTIQNYETNRRKIDNETLIKLSNIYNVSIDYILCL 61 Query: 94 EVIDRRYEDVTNKKRL 109 + +K+L Sbjct: 62 TDNRENIQLEEEEKQL 77 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+ +RK+KG S + G+LLG+ T+ NYE R + + K+ + +D+I Sbjct: 1 MNRLRELRKEKGYSTQQVGELLGVHYVTIQNYETNRRKIDNETLIKLSNIYNVSIDYILC 60 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + ++ + + + D KS Sbjct: 61 LTDNRENIQLEEEEKQLLNNYRELDTKSK 89 >gi|16129529|ref|NP_416088.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. MG1655] gi|89108412|ref|AP_002192.1| predicted regulator for DicB [Escherichia coli str. K-12 substr. W3110] gi|170020075|ref|YP_001725029.1| transcriptional repressor DicA [Escherichia coli ATCC 8739] gi|170081237|ref|YP_001730557.1| Qin prophage; regulator for DicB [Escherichia coli str. K-12 substr. DH10B] gi|218554136|ref|YP_002387049.1| transcriptional repressor DicA [Escherichia coli IAI1] gi|238900790|ref|YP_002926586.1| Qin prophage; putative regulator for DicB [Escherichia coli BW2952] gi|300939073|ref|ZP_07153765.1| transcriptional repressor DicA [Escherichia coli MS 21-1] gi|307310860|ref|ZP_07590506.1| transcriptional regulator, XRE family [Escherichia coli W] gi|118631|sp|P06966|DICA_ECOLI RecName: Full=HTH-type transcriptional regulator dicA; AltName: Full=Repressor protein of division inhibition gene dicA gi|41278|emb|CAA30349.1| unnamed protein product [Escherichia coli] gi|1742572|dbj|BAA15275.1| predicted regulator for DicB [Escherichia coli str. K12 substr. W3110] gi|1787853|gb|AAC74643.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. MG1655] gi|169755003|gb|ACA77702.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169889072|gb|ACB02779.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. DH10B] gi|218360904|emb|CAQ98476.1| putative transcriptional regulator for DicB; Qin prophage [Escherichia coli IAI1] gi|238863388|gb|ACR65386.1| Qin prophage; predicted regulator for DicB [Escherichia coli BW2952] gi|260449307|gb|ACX39729.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|284921476|emb|CBG34547.1| repressor protein of division inhibition gene [Escherichia coli 042] gi|300456019|gb|EFK19512.1| transcriptional repressor DicA [Escherichia coli MS 21-1] gi|306909038|gb|EFN39534.1| transcriptional regulator, XRE family [Escherichia coli W] gi|315060877|gb|ADT75204.1| Qin prophage; predicted regulator for DicB [Escherichia coli W] gi|315136211|dbj|BAJ43370.1| transcriptional repressor DicA [Escherichia coli DH1] gi|323378556|gb|ADX50824.1| helix-turn-helix domain protein [Escherichia coli KO11] gi|323940355|gb|EGB36547.1| helix-turn-helix protein [Escherichia coli E482] Length = 135 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK TQ+ +A +V+ +E G + + L + S WI Sbjct: 8 IGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERGDSEPTGKNLFALSKVLQCSPTWIL 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 G+ + V L Sbjct: 68 FGDEDKQPTPPVEKPVAL 85 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK+ +Q K L + + ++S +E+G + P K + +V + WI FG Sbjct: 10 ERIRYRRKNLKHTQRSLAKALKISHVSVSQWERGDSEPTGKNLFALSKVLQCSPTWILFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 DE P S K+ Sbjct: 70 DEDKQPTPPVEKPVALSPKE 89 >gi|325264127|ref|ZP_08130859.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324030611|gb|EGB91894.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 201 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 1/87 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK R +Q+ +A AV +E G + + L +EIS + Sbjct: 3 LSENIKARRTQLKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELAFLFEISISELV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D + +K D L Sbjct: 63 DPQTYAEEQAAQ-EQKFRDKQQNAKML 88 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 33/87 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +K+ R MSQ LG+ ++ +E G + P K ++ + + + Sbjct: 1 MALSENIKARRTQLKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELAFLFEISISE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + ++ + K + +K Sbjct: 61 LVDPQTYAEEQAAQEQKFRDKQQNAKM 87 >gi|317494163|ref|ZP_07952579.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917936|gb|EFV39279.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 154 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 33/98 (33%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + G R+K++R A +Q+ A S ++ E G + S+ L Sbjct: 2 KKTLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALN 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + + ++ + ++ D L S R Sbjct: 62 VEPWRLLVSDLSEDTDPELLVPYAADGSCFHPGLASTR 99 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 21/56 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 G R+K +R GMSQ F G S +S E+G + + + Sbjct: 7 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNV 62 >gi|288961553|ref|YP_003451863.1| transcriptional regulator [Azospirillum sp. B510] gi|288913833|dbj|BAI75319.1| transcriptional regulator [Azospirillum sp. B510] Length = 188 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY--------LRNE 82 DVG R+K IR+ + +Q+ +A A ++L E S S+ L Sbjct: 4 DVGARLKQIREQHGLSQRALAQRAGVTNGTISLIEQNRSSPSVSSLRKVLQGIPMSLAEF 63 Query: 83 YEISFDWI 90 + S D + Sbjct: 64 F--SSDDL 69 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +GARLK IR+ G+SQ + G+ N T+S EQ R+ P + RK+ Q L Sbjct: 3 FDVGARLKQIREQHGLSQRALAQRAGVTNGTISLIEQNRSSPSVSSLRKVLQGIPMSLAE 62 Query: 172 IYFGDEVIVPKSI 184 + D++ P+ I Sbjct: 63 FFSSDDLPPPEQI 75 >gi|239981788|ref|ZP_04704312.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] gi|291453649|ref|ZP_06593039.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] gi|291356598|gb|EFE83500.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] Length = 88 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V RI +R T++++A + E G S S+ AL + +E+ ++I+ Sbjct: 19 VHNRIAMLRVERQVTRRQLADALGVHYQTIGYLERGEYSPSLHLALRIAAYFEVPVEFIF 78 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+ +R ++ +++ + LG+ T+ E+G P + A +I + +++I+ Sbjct: 20 HNRIAMLRVERQVTRRQLADALGVHYQTIGYLERGEYSPSLHLALRIAAYFEVPVEFIF 78 >gi|225567835|ref|ZP_03776860.1| hypothetical protein CLOHYLEM_03908 [Clostridium hylemonae DSM 15053] gi|225163313|gb|EEG75932.1| hypothetical protein CLOHYLEM_03908 [Clostridium hylemonae DSM 15053] Length = 255 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K VG RI+ RK T + +A N+ ++ ++ +ENG I + + I Sbjct: 29 KQVGERIRFYRKQEKMTLEMLAAKMNKSKATISKYENGTIVMDIGTLYDFADVFRIPV 86 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ RK + M+ + +T+S YE G + +I V + + + Sbjct: 33 ERIRFYRKQEKMTLEMLAAKMNKSKATISKYENGTIVMDIGTLYDFADVFRIPVYCLI 90 >gi|218134936|ref|ZP_03463740.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC 43243] gi|217990321|gb|EEC56332.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC 43243] Length = 188 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G I+ R+A TQKE A + E + +E+G I + NE + + Sbjct: 5 EEIGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQIANELNVPWQE 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E + ++ + + + + Sbjct: 65 LLSPEDNNIPKDNTATEYPAYEFHTMSDV 93 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R+ + ++Q EF + LG T+ YE G + +I ++I + Sbjct: 9 KAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQIANELNVPWQELLSP 68 Query: 176 DEVIVPKS 183 ++ +PK Sbjct: 69 EDNNIPKD 76 >gi|212693179|ref|ZP_03301307.1| hypothetical protein BACDOR_02686 [Bacteroides dorei DSM 17855] gi|237709919|ref|ZP_04540400.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237725412|ref|ZP_04555893.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265753572|ref|ZP_06088927.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212664284|gb|EEB24856.1| hypothetical protein BACDOR_02686 [Bacteroides dorei DSM 17855] gi|229436099|gb|EEO46176.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456012|gb|EEO61733.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263235286|gb|EEZ20810.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 150 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE-ISFDWIYD 92 RI I + + T + A S+++ +G + S+ + + + IS DW+ Sbjct: 3 ERIAQIIQKEDMTAAQFAEKIGISPSSLSHILSGRNNPSLEVVMKIHKACDYISLDWLLY 62 Query: 93 GEVIDRRYEDVTNKKR 108 GE D N Sbjct: 63 GEGQMETDVDSDNNIH 78 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK-KHLDWI 172 + R+ I + + M+ +F + +G+ S+LS+ GR P ++ KI + LDW+ Sbjct: 1 MKERIAQIIQKEDMTAAQFAEKIGISPSSLSHILSGRNNPSLEVVMKIHKACDYISLDWL 60 Query: 173 YFGDEVIV 180 +G+ + Sbjct: 61 LYGEGQME 68 >gi|169334705|ref|ZP_02861898.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM 17244] gi|169257443|gb|EDS71409.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM 17244] Length = 125 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++++G +IK RK +Q ++A ++ ++ E G+ S++ + + N +IS D Sbjct: 6 YENLGKQIKKYRKQKKYSQSDLAEKIDKSVQHISKIERGISKASLQTLVDITNALDISMD 65 Query: 89 WIYD 92 + + Sbjct: 66 ELLN 69 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +++ +G ++K RK K SQ + + + +S E+G + ++ I Sbjct: 1 MIKINYENLGKQIKKYRKQKKYSQSDLAEKIDKSVQHISKIERGISKASLQTLVDITNAL 60 Query: 166 KKHLDWIY 173 +D + Sbjct: 61 DISMDELL 68 >gi|167769192|ref|ZP_02441245.1| hypothetical protein ANACOL_00515 [Anaerotruncus colihominis DSM 17241] gi|167668832|gb|EDS12962.1| hypothetical protein ANACOL_00515 [Anaerotruncus colihominis DSM 17241] Length = 166 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +R TQK++A N S++ +EN + S L + +S +++ Sbjct: 13 LSARLKALRSEKGITQKQLAEQLNTSISSIISYENSIRFPSSAVLGLLSRYFNVSKEYLL 72 Query: 92 DGEVIDRRYEDVTNKKRL 109 GE +RR + L Sbjct: 73 -GETDERRPAQKWDDPEL 89 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + + ARLK++R +KG++Q + + L S++ +YE P + + ++ Sbjct: 11 HYLSARLKALRSEKGITQKQLAEQLNTSISSIISYENSIRFPSSAVLGLLSRYFNVSKEY 70 Query: 172 IYFGDEVIVP 181 + + P Sbjct: 71 LLGETDERRP 80 >gi|160933444|ref|ZP_02080832.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] gi|156867321|gb|EDO60693.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] Length = 169 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 4 ENIKAIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 V +A + Sbjct: 61 LGEAVVETEADTLKAISEK 79 >gi|153931215|ref|YP_001382744.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935772|ref|YP_001386295.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168177684|ref|ZP_02612348.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|170758347|ref|YP_001785679.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|226947573|ref|YP_002802664.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|152927259|gb|ABS32759.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931686|gb|ABS37185.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|169405336|gb|ACA53747.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|182671289|gb|EDT83263.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226844325|gb|ACO86991.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 181 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I+++RK N T K+++ S ++ EN S +I + + + + Sbjct: 4 EIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYF 63 Query: 91 YD 92 + Sbjct: 64 FK 65 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +++++RK+K ++ + + G+ S LS E + I +KI + + Sbjct: 3 NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITY 62 Query: 172 IYFGDE 177 + E Sbjct: 63 FFKSPE 68 >gi|89212744|gb|ABD63852.1| putative repressor [Lactococcus phage phismq86] gi|326407702|gb|ADZ64773.1| phage repressor [Lactococcus lactis subsp. lactis CV56] Length = 136 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 32/69 (46%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R+ T K++A + ESA++ +E+G S + L + + + + + G Sbjct: 12 VKTLRQQAGLTMKQLAEKMGKTESAISRWESGDNSPKLEDINALADFFNVDMNTLVYGAG 71 Query: 96 IDRRYEDVT 104 + + E Sbjct: 72 VVPKNEPFD 80 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 31/67 (46%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K++R+ G++ + + +G S +S +E G P+++ + ++ + +G Sbjct: 11 MVKTLRQQAGLTMKQLAEKMGKTESAISRWESGDNSPKLEDINALADFFNVDMNTLVYGA 70 Query: 177 EVIVPKS 183 V+ Sbjct: 71 GVVPKNE 77 >gi|146343555|ref|YP_001208603.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196361|emb|CAL80388.1| Shikimate kinase [Bradyrhizobium sp. ORS278] Length = 307 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 3/99 (3%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G R++ +R ++K +A + E + E+G + SI + N Sbjct: 18 ETDFLDQLGQRVRRMRGLAGMSRKVLAEVSGISERYIAQLESGKGNVSIVLLRRIANAIN 77 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 D I G + + + L A +++ +R+ Sbjct: 78 APLDDIIPGGEPSPDWPVI---RDLLKKASPSQIAQVRE 113 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R GMS+ ++ G+ ++ E G+ I R+I LD I G Sbjct: 27 QRVRRMRGLAGMSRKVLAEVSGISERYIAQLESGKGNVSIVLLRRIANAINAPLDDIIPG 86 Query: 176 DEVIVP 181 E Sbjct: 87 GEPSPD 92 >gi|229176555|ref|ZP_04303981.1| Transcription regulator [Bacillus cereus MM3] gi|228606911|gb|EEK64307.1| Transcription regulator [Bacillus cereus MM3] Length = 118 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK++RK +QKE+ + ES V+ E+G S + + ++ D++ G Sbjct: 8 RIKELRKERKWSQKELGEKVDVSESFVSKVESGKKQPSREVTAKIAEVFNVTTDFLL-GR 66 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 + ++ + K + L +++ M Q E Sbjct: 67 SDEADLNEMLDVKFKAMKKRLSNLPESQREMIMKQAE 103 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK++ SQ E G+ + + S +S E G+ P + KI +V D++ + Sbjct: 9 IKELRKERKWSQKELGEKVDVSESFVSKVESGKKQPSREVTAKIAEVFNVTTDFLLGRSD 68 Query: 178 VIVPKSIKRAKGNQSSKK 195 + K K+ Sbjct: 69 EADLNEMLDVKFKAMKKR 86 >gi|225017048|ref|ZP_03706240.1| hypothetical protein CLOSTMETH_00973 [Clostridium methylpentosum DSM 5476] gi|224950215|gb|EEG31424.1| hypothetical protein CLOSTMETH_00973 [Clostridium methylpentosum DSM 5476] Length = 103 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + Y +G ++K +R+A + +Q E+A ++++ +EN + S+ L Sbjct: 1 MMSADKTYLYGLGEKLKILREARHFSQAEVAKKLGIAPASMSAYENETKTPSLEVFAQLI 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 Y++S D++ G D + +T ++ Y + K Sbjct: 61 AFYDVSADYLI-GFSKDNLLKSLTTEQVDIIYRLIEHFKK 99 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 43/92 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G +LK +R+ + SQ E K LG+ +++S YE P ++ ++ D+ Sbjct: 10 YGLGEKLKILREARHFSQAEVAKKLGIAPASMSAYENETKTPSLEVFAQLIAFYDVSADY 69 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + + KS+ + + + + KK + Sbjct: 70 LIGFSKDNLLKSLTTEQVDIIYRLIEHFKKEN 101 >gi|187776895|ref|ZP_02993368.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC 15579] gi|187775554|gb|EDU39356.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC 15579] Length = 189 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 38/89 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R T KE++ N ++ E G+ + +I + E +++ + Sbjct: 4 DIGKKIKKLRTNKKLTLKELSERTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVNLTYF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +++ + +K + +K Sbjct: 64 FQAPKKNKKIVLRSYEKEILQVENNRFIK 92 Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K +R +K ++ E + + LS E+G T I KI + +L + + Sbjct: 7 KKIKKLRTNKKLTLKELSERTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVNLTYFF 64 >gi|164686229|ref|ZP_02210259.1| hypothetical protein CLOBAR_02667 [Clostridium bartlettii DSM 16795] gi|164601831|gb|EDQ95296.1| hypothetical protein CLOBAR_02667 [Clostridium bartlettii DSM 16795] Length = 60 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +++K +R+ QK +A S + E G S+ A+ + +++S + +++ Sbjct: 2 SKLKQLREERGLPQKAVAKSVGITTSYYGMIELGTRRPSLDLAIRICKYFDLSVEEVFE 60 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++LK +R+++G+ Q K +G+ S E G P + A +I + ++ ++ Sbjct: 1 MSKLKQLREERGLPQKAVAKSVGITTSYYGMIELGTRRPSLDLAIRICKYFDLSVEEVF 59 >gi|160914122|ref|ZP_02076344.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991] gi|158433933|gb|EDP12222.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991] Length = 124 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K++G RI+ RK TQ+E+A ++ V E G+ + S +S Sbjct: 2 ELIKELGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLS 61 Query: 87 FDWIYDGEVIDRRYEDVT 104 D + + ++ + Sbjct: 62 LDSLMNLDLPEDEQAAND 79 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK+KG++Q E L + + E+G P + R +V LD + Sbjct: 9 RRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLSLDSLMNL 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|157829815|pdb|1ADR|A Chain A, Determination Of The Nuclear Magnetic Resonance Structure Of The Dna-Binding Domain Of The P22 C2 Repressor (1-76) In Solution And Comparison With The Dna-Binding Domain Of The 434 Repressor Length = 76 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L + S D++ Sbjct: 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL 65 Query: 92 DGE 94 G+ Sbjct: 66 KGD 68 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+++ RK + Q GK++G+ N +S +E+ T P + + + + Sbjct: 1 MNTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCS 60 Query: 169 LDWIYFGD 176 D++ GD Sbjct: 61 PDYLLKGD 68 >gi|152983209|ref|YP_001352574.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151283286|gb|ABR91696.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 207 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 26/71 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RI +R + TQ ++A+ + ++ EN I + + + + Sbjct: 18 QLGGRISKLRTSRGFTQDKLALETGFTKGYLSKIENSKVIPPIGTLVKIAQVLDTDLSAL 77 Query: 91 YDGEVIDRRYE 101 + E + Sbjct: 78 LEPETEEIDSP 88 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +R +G +Q + G LS E + IP I KI QV L + + Sbjct: 23 ISKLRTSRGFTQDKLALETGFTKGYLSKIENSKVIPPIGTLVKIAQVLDTDLSALLEPET 82 Query: 178 VIVPKSI 184 + + Sbjct: 83 EEIDSPV 89 >gi|121602273|ref|YP_989497.1| DNA-binding protein [Bartonella bacilliformis KC583] gi|120614450|gb|ABM45051.1| DNA-binding protein [Bartonella bacilliformis KC583] Length = 137 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 2/98 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTRI+ R TQ+++ + +E G + ++ + + Sbjct: 15 VGTRIRLRRNMLGLTQEKLGEQLGITFQQIQKYEKGTNRVGASRLQAIAEIMDVPVSYFF 74 Query: 92 DG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 D ++ +D + ++ +R + Sbjct: 75 DKGINNQPEESFAESDSNFMDFCSSNEGIQLMRAFTNI 112 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-FGD 176 ++ R G++Q + G+ LG+ + YE+G + I ++ + + + G Sbjct: 19 IRLRRNMLGLTQEKLGEQLGITFQQIQKYEKGTNRVGASRLQAIAEIMDVPVSYFFDKGI 78 Query: 177 EVIVPKSIKRAKGN 190 +S + N Sbjct: 79 NNQPEESFAESDSN 92 >gi|332358032|gb|EGJ35865.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 62 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFW 60 Query: 175 G 175 Sbjct: 61 E 61 >gi|307704202|ref|ZP_07641125.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307622233|gb|EFO01247.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 108 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 44/107 (41%), Gaps = 1/107 (0%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +++ +I+D+R + TQ+E+A N ++ EN + S+ + + + E Sbjct: 1 MDDILENISNQIRDLRVSKKITQQELAERTNLSVPYISQIENSHRNISLETFVKIVDALE 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQI 130 + + + + E + ++ + + + + +SQ Sbjct: 61 VPLSDFFLPYSVPQDTEMMELLLKIQKHPQHKMIVHKVMEILELSQD 107 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ +R K ++Q E + + +S E ++ KI + L + Sbjct: 10 NQIRDLRVSKKITQQELAERTNLSVPYISQIENSHRNISLETFVKIVDALEVPLSDFF 67 >gi|226362736|ref|YP_002780514.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226241221|dbj|BAH51569.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 206 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G R+K R+A T E+A G + ++ E S S+ + + I Sbjct: 16 PRIGPRLKAARQAQRLTLDELAAGCGITKGYLSKIERDHASASVATLVRICAALNIPVGS 75 Query: 90 IYD 92 +++ Sbjct: 76 LFE 78 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG RLK+ R+ + ++ E G+ LS E+ + +I Sbjct: 13 VDAPRIGPRLKAARQAQRLTLDELAAGCGITKGYLSKIERDHASASVATLVRICAALNIP 72 Query: 169 LDWIY 173 + ++ Sbjct: 73 VGSLF 77 >gi|212633085|ref|YP_002309610.1| Cro/CI family transcriptional regulator [Shewanella piezotolerans WP3] gi|212554569|gb|ACJ27023.1| Transcriptional regulator, Cro/CI family [Shewanella piezotolerans WP3] Length = 69 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + TQ ++A +N E G S+ A + ++I + I++ Sbjct: 3 NRLKILRAERDWTQADLADKLEVSRQTINAIEKGKYDPSLPLAFKVARLFQIPIEAIFED 62 Query: 94 EVI 96 E Sbjct: 63 EAE 65 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + L + T++ E+G+ P + A K+ ++ + ++ I+ Sbjct: 1 MKNRLKILRAERDWTQADLADKLEVSRQTINAIEKGKYDPSLPLAFKVARLFQIPIEAIF 60 Query: 174 FGD 176 + Sbjct: 61 EDE 63 >gi|206968686|ref|ZP_03229641.1| transcriptional regulator AnsR [Bacillus cereus AH1134] gi|229182157|ref|ZP_04309444.1| HTH-type transcriptional regulator ansR [Bacillus cereus 172560W] gi|206735727|gb|EDZ52885.1| transcriptional regulator AnsR [Bacillus cereus AH1134] gi|228601331|gb|EEK58865.1| HTH-type transcriptional regulator ansR [Bacillus cereus 172560W] Length = 125 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|71083650|ref|YP_266370.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91763309|ref|ZP_01265273.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1002] gi|71062763|gb|AAZ21766.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91717722|gb|EAS84373.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1002] Length = 123 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 2/106 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G ++K R A TQ ++A N + +E G S L L N + Sbjct: 2 EDNFNKHLGNKLKLRRLALGLTQTKVAKAINVTFQQIQKYEKGTNGVSSIRLLQLANYLK 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + ++ + E ++ + L + + Q Sbjct: 62 VPVNYFF--EDFSEYLINLERSQEGHMNVNYNFLVKLYSELNNDQK 105 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + +G +LK R G++Q + K + + + YE+G ++ Sbjct: 1 MEDNFNKHLGNKLKLRRLALGLTQTKVAKAINVTFQQIQKYEKGTNGVSSIRLLQLANYL 60 Query: 166 KKHLDWIY 173 K +++ + Sbjct: 61 KVPVNYFF 68 >gi|91976769|ref|YP_569428.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91683225|gb|ABE39527.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] Length = 106 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 1/98 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDW 89 G RIKD+R T ++A +S + EN S + ++ D+ Sbjct: 2 KFGQRIKDLRTKKGLTLDQLAQETGSSKSYIWELENKNPPRPSAEKLSAIAGALGVTVDY 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 ++ + + T R + IR+ + Sbjct: 62 LFGADTQTLNEAEDTAFFRQYSGLPEETRRQIREMARI 99 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLD 170 G R+K +R KG++ + + G S + E P + I +D Sbjct: 1 MKFGQRIKDLRTKKGLTLDQLAQETGSSKSYIWELENKNPPRPSAEKLSAIAGALGVTVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSS 193 +++ D + ++ A Q S Sbjct: 61 YLFGADTQTLNEAEDTAFFRQYS 83 >gi|307129602|ref|YP_003881618.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306527131|gb|ADM97061.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 89 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 LI + G R+K +R +Q+ A + ++ E G+ + ++ Sbjct: 15 LIGMKNTKDITARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGV 74 Query: 79 LRNEYEISFDWIYD 92 + + EI ++D Sbjct: 75 IADGLEIQLQSLFD 88 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+K++R G+SQ F G+ + +S E+G P ++ I + L ++ Sbjct: 28 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADGLEIQLQSLF 87 >gi|302522509|ref|ZP_07274851.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|318058819|ref|ZP_07977542.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actG] gi|318075294|ref|ZP_07982626.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actF] gi|333023793|ref|ZP_08451857.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] gi|302431404|gb|EFL03220.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|332743645|gb|EGJ74086.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] Length = 509 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ +Q ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G SQ + + L S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|228926909|ref|ZP_04089975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832644|gb|EEM78215.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 114 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 23/73 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K R + TQ E S ++ E + + + ++IS D + Sbjct: 4 FGENLKKFRNNRSLTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFDISVDTLM 63 Query: 92 DGEVIDRRYEDVT 104 + + Sbjct: 64 GRKFPKSERQLED 76 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK R ++ ++Q EFG + + S +SN E P++ +I +D Sbjct: 1 MNTFGENLKKFRNNRSLTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFDISVD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + + ++ Sbjct: 61 TLMGRKFPKSERQLED 76 >gi|229099483|ref|ZP_04230412.1| hypothetical protein bcere0020_47010 [Bacillus cereus Rock3-29] gi|228683979|gb|EEL37928.1| hypothetical protein bcere0020_47010 [Bacillus cereus Rock3-29] Length = 79 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFN 61 Query: 85 ISFDWIYD 92 + + I+ Sbjct: 62 VPVEEIFT 69 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI ++ Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIF 60 Query: 166 KKHLDWIYF 174 ++ I+ Sbjct: 61 NVPVEEIFT 69 >gi|295835925|ref|ZP_06822858.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] gi|197698390|gb|EDY45323.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] Length = 509 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ +Q ++A +SAVN E G + S+ + + Sbjct: 2 ADDYLVRIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALD 61 Query: 85 ---ISFDW 89 +S + Sbjct: 62 SEIVSLGY 69 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDW 171 ++ R+ +G SQ + + L S ++ E+G ++ +I + L + Sbjct: 13 IRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSLGY 69 >gi|197122398|ref|YP_002134349.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917180|ref|YP_002492484.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172247|gb|ACG73220.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] gi|219955034|gb|ACL65418.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 81 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+ + +G R+++ R+ TQ+ +A + + V+L E G + + + Sbjct: 12 RREELRRLGERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARALG 71 Query: 85 IS 86 I Sbjct: 72 IP 73 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R+ +GM+Q + L + + +S E+G P I + I Sbjct: 21 ERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARALGIPATRIVAE 80 Query: 176 D 176 D Sbjct: 81 D 81 >gi|119505191|ref|ZP_01627266.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [marine gamma proteobacterium HTCC2080] gi|119458882|gb|EAW39982.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [marine gamma proteobacterium HTCC2080] Length = 70 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ K++ ++ +RKA TQ++++ A ++N ENG+ S AL + + + Sbjct: 3 KHHKNLLNNLEQLRKAAGFTQQQLSDSAGVSRKSINAIENGIYVPSTVLALKISQTLKCT 62 Query: 87 FDWIYD 92 D ++ Sbjct: 63 VDDLFQ 68 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + L+ +RK G +Q + G+ +++ E G +P A KI Q K + Sbjct: 4 HHKNLLNNLEQLRKAAGFTQQQLSDSAGVSRKSINAIENGIYVPSTVLALKISQTLKCTV 63 Query: 170 DWIY 173 D ++ Sbjct: 64 DDLF 67 >gi|3915849|sp|P16117|RPC1_BP434 RecName: Full=Repressor protein CI gi|14987|emb|CAA68301.1| unnamed protein product [Phage 434] Length = 95 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+K R Q E+A + ++ ENG R+ L + +S DW+ Sbjct: 3 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 61 Query: 92 DGEVIDRRYE 101 +G Sbjct: 62 NGTSDSNVRF 71 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I +R+KS R G++Q E + +G ++ E G+T + ++ +DW Sbjct: 1 MSISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDW 59 Query: 172 IYFG 175 + G Sbjct: 60 LLNG 63 >gi|333004623|gb|EGK24147.1| helix-turn-helix family protein [Shigella flexneri VA-6] Length = 185 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRLDPY 112 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDLIEM 88 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ +G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 66 FFSEPEKPDEPQV 78 >gi|298246750|ref|ZP_06970555.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297549409|gb|EFH83275.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 930 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI-YD 92 R++ R +Q+E+A +N +E G+ + S + L L + + S + Sbjct: 11 QRLRAERLRKRWSQQELADRIGVSVITINRWERGVTAPSPYFRLKLCSLFGKSATELGLF 70 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + +D + +LK + Sbjct: 71 PDQQAEQAMSPEPGPPVDHPQLPQQLKYL 99 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+L P RL++ R K SQ E +G+ T++ +E+G T P K+ + Sbjct: 1 MKKLAPAGANQRLRAERLRKRWSQQELADRIGVSVITINRWERGVTAPSPYFRLKLCSLF 60 Query: 166 KKHLDWI-YFGDE 177 K + F D+ Sbjct: 61 GKSATELGLFPDQ 73 >gi|296282095|ref|ZP_06860093.1| transcriptional regulator, Cro/CI family protein [Citromicrobium bathyomarinum JL354] Length = 63 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N +Q+ +A +VN E G S+ A + + ++ + I+ Sbjct: 3 NRLKVLRAERNWSQQALAEELGVSRQSVNAIETGRYDPSLPLAFQIAEVFGLAIEEIFIR 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ + LG+ +++ E GR P + A +I +V ++ I+ Sbjct: 1 MKNRLKVLRAERNWSQQALAEELGVSRQSVNAIETGRYDPSLPLAFQIAEVFGLAIEEIF 60 Query: 174 FGD 176 + Sbjct: 61 IRE 63 >gi|229043538|ref|ZP_04191247.1| Transcriptional regulator, Xre [Bacillus cereus AH676] gi|228725760|gb|EEL77008.1| Transcriptional regulator, Xre [Bacillus cereus AH676] Length = 404 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ ++A G+ +S ++ ENG + S++ Y+ ++ E ++ Sbjct: 4 LGEKIKTLRKEKKLTQTDLA-GSELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + ++ +K + Sbjct: 63 EDDDVEIVELIQQTEKLI 80 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLLED 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + + I++ + + K +K D+ Sbjct: 65 DDVEIVELIQQTE--KLIKANKYDE 87 >gi|221195127|ref|ZP_03568183.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC 49626] gi|221185030|gb|EEE17421.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC 49626] Length = 217 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 26/72 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + IK R+ N TQ+E+A + S V +E G + + + +S + Sbjct: 3 LASNIKYYRQRENLTQEELAEKVDVARSTVTQWETGWSQPRMGAIQRIASVLNVSVSDLV 62 Query: 92 DGEVIDRRYEDV 103 + Sbjct: 63 ADSISMNSTSRP 74 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ + +K R+ + ++Q E + + + ST++ +E G + P + ++I V + Sbjct: 1 MSLASNIKYYRQRENLTQEELAEKVDVARSTVTQWETGWSQPRMGAIQRIASVLNVSVSD 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|213019781|ref|ZP_03335584.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994611|gb|EEB55256.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 302 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG RIK+ R TQK++A + +E G + S+ + IS + Sbjct: 158 KVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRAAVSLEMLHEIAKVLSISIIDL 217 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 D E+ + + I R+ + M + + + E+ R Sbjct: 218 LPESDEDSEAEEKLSNLIEEYKKI-----ESRELRDMLIKSLFEGIHVCR------EKVR 266 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 +I+ AR + + +D I Sbjct: 267 EEKKIEVARNLVKE-GISVDIIL 288 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG ++K R TQK++A A+ +E G I+ + ++ + Sbjct: 8 EVGQKVKSWRLERGYTQKDLAEKVGVKYWAILQYEKGSRKIPIKKLYAIAEALSVNVKGL 67 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 GE + +++ L+ Sbjct: 68 VCGETLPNEKRYFEDEEILN 87 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 3/131 (2%) Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 E + I A L +S + + K PY +G R+K R Sbjct: 113 ERSRKAVKIEVARGLMKV-GVSAH--VISRTTNLSIGEYEENKIPIPYKVGQRIKEWRLI 169 Query: 125 KGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSI 184 +G +Q + +G+ N + YEQGR ++ +I +V + + + Sbjct: 170 RGYTQKDLANKVGITNQGIYEYEQGRAAVSLEMLHEIAKVLSISIIDLLPESDEDSEAEE 229 Query: 185 KRAKGNQSSKK 195 K + + KK Sbjct: 230 KLSNLIEEYKK 240 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +K LD +KS R ++G +Q + + +G+ + YE+G IK I + Sbjct: 2 EKSLDCEVGQK-VKSWRLERGYTQKDLAEKVGVKYWAILQYEKGSRKIPIKKLYAIAEAL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 ++ + G+ + K + + K KD++ Sbjct: 61 SVNVKGLVCGETLPNEKRYFEDEEILNLVKGYKDEE 96 >gi|160897055|ref|YP_001562637.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160362639|gb|ABX34252.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 185 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 55/148 (37%), Gaps = 7/148 (4%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL-RNEYEI 85 + G R++ R+ +Q +MA +E + + S + + + +I Sbjct: 4 EIRVIFGERLRQERERLGLSQADMAKLGGTKMRTYQDWERDVATVSAEFLARISAHGLDI 63 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 S + + +++ A ARL+ R+ +S+ E + G L Sbjct: 64 S---FVLTGLRSFDPNAIQHERPEPTLA--ARLQQERQRLNLSEAELARKAGQAKQVLQQ 118 Query: 146 YEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +E G +P+ +++ + + ++ Sbjct: 119 FESGALVPDATALQQL-HLAGVDIGYVL 145 Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 5/86 (5%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE 65 F+ T L+S + + + + R++ R+ N ++ E+A A Q + + FE Sbjct: 65 FVLTGLRSFDPNAI----QHERPEPTLAARLQQERQRLNLSEAELARKAGQAKQVLQQFE 120 Query: 66 NGMCSTSIRYALYLRNEYEISFDWIY 91 +G L + ++ Sbjct: 121 SGALVPDATALQQLHLA-GVDIGYVL 145 >gi|146319399|ref|YP_001199111.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146321603|ref|YP_001201314.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253752422|ref|YP_003025563.1| DNA-binding protein [Streptococcus suis SC84] gi|253754248|ref|YP_003027389.1| DNA-binding protein [Streptococcus suis P1/7] gi|253756182|ref|YP_003029322.1| DNA-binding protein [Streptococcus suis BM407] gi|145690205|gb|ABP90711.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145692409|gb|ABP92914.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251816711|emb|CAZ52353.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251818646|emb|CAZ56481.1| putative DNA-binding protein [Streptococcus suis BM407] gi|251820494|emb|CAR47248.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|292559027|gb|ADE32028.1| Predicted transcriptional regulator [Streptococcus suis GZ1] gi|319758828|gb|ADV70770.1| transcriptional regulator [Streptococcus suis JS14] Length = 62 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+KD R +Q ++A +N+ EN + S+ + L + + ++ Sbjct: 2 NRVKDYRLLLGISQLDLAKAIGVSRQTINMIENNKYNPSLDLCINLAKALQTDLNSLF 59 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R G+SQ++ K +G+ T++ E + P + + + + L+ +++ Sbjct: 1 MNRVKDYRLLLGISQLDLAKAIGVSRQTINMIENNKYNPSLDLCINLAKALQTDLNSLFW 60 >gi|186473005|ref|YP_001860347.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195337|gb|ACC73301.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 199 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 8/72 (11%), Positives = 27/72 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++++R + + + +A + S ++L E S + L ++ ++ Sbjct: 10 IARRVRELRDGHGLSLEALAERSGVSRSNISLIERARSSPTAAVLDKLATALGVTLASLF 69 Query: 92 DGEVIDRRYEDV 103 + + Sbjct: 70 EAPAPSAQTPSP 81 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%) Query: 109 LDPYAIGARL----KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 +D I + + + +R G+S + G+ S +S E+ R+ P K+ Sbjct: 1 MDFMDIHSLIARRVRELRDGHGLSLEALAERSGVSRSNISLIERARSSPTAAVLDKLATA 60 Query: 165 TKKHLDWIY 173 L ++ Sbjct: 61 LGVTLASLF 69 >gi|1572852|gb|AAD13636.1| putative DNA binding transcription repressor [Pseudomonas aeruginosa] Length = 109 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K R A TQ+++ A +S+ +E G S AL + ++ D + Sbjct: 3 LAANLKKFRAARGLTQQQVYEAAGVSKSSYTGYEAGHGMPSADKALAMAKVLGVTTDELL 62 Query: 92 DGEVI 96 E Sbjct: 63 MDESE 67 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + A LK R +G++Q + + G+ S+ + YE G +P A + +V D Sbjct: 1 MTLAANLKKFRAARGLTQQQVYEAAGVSKSSYTGYEAGHGMPSADKALAMAKVLGVTTDE 60 Query: 172 IYFGDEVIV 180 + + ++ Sbjct: 61 LLMDESELL 69 >gi|193067087|ref|ZP_03048056.1| transcriptional regulator PuuR [Escherichia coli E110019] gi|192959677|gb|EDV90111.1| transcriptional regulator PuuR [Escherichia coli E110019] Length = 185 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRLDPY 112 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDLIEM 88 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ +G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 66 FFSEPEKPDEPQV 78 >gi|315281473|ref|ZP_07870091.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313614873|gb|EFR88399.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 180 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|282876544|ref|ZP_06285409.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|281294632|gb|EFA87161.1| DNA-binding protein [Staphylococcus epidermidis SK135] Length = 96 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +++++R+ N TQ+E+A + + ++ E+ S S+ L L S Sbjct: 2 DIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + D Y L Sbjct: 62 FKEPSDEKVLYKKKEQTIYDEYDKRLYL 89 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 2/87 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R+ K ++Q E + + +S E P ++ + +V Sbjct: 1 MDIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + E K + + K + K Sbjct: 61 FF--KEPSDEKVLYKKKEQTIYDEYDK 85 >gi|255263387|ref|ZP_05342729.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255105722|gb|EET48396.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 139 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 1/104 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R+ +Q+ +A + +E+ + L +S W+ Sbjct: 25 FGDRVAAAREQAGLSQEALAKQLGIKNGTLRNWEHDLNEPRANKLQMLSGILGVSLMWLL 84 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 +GE D + D A+ +++++ + KL Sbjct: 85 NGEGDGISAPDQEDLGG-DINAVMTEIRAVKAQLLQAADRMAKL 127 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +D+ N + G R+ + R+ G+SQ K LG+ N TL N+E P + Sbjct: 12 DDMNNWYSDETATFGDRVAAAREQAGLSQEALAKQLGIKNGTLRNWEHDLNEPRANKLQM 71 Query: 161 IKQVTKKHLDWIYFGD 176 + + L W+ G+ Sbjct: 72 LSGILGVSLMWLLNGE 87 >gi|152996614|ref|YP_001341449.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150837538|gb|ABR71514.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 203 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K+IR + T +E+ S ++ EN S S L N E+ + Sbjct: 23 ELGKRVKEIRLSKGWTLEEVGKRTGIARSTLSKIENDQVSPSFTIVQKLINGLEMDLPQL 82 Query: 91 Y 91 + Sbjct: 83 F 83 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 + ++P +G R+K IR KG + E GK G+ STLS E + P +K+ Sbjct: 14 DPDRFVEPLELGKRVKEIRLSKGWTLEEVGKRTGIARSTLSKIENDQVSPSFTIVQKLIN 73 Query: 164 VTKKHLDWIY 173 + L ++ Sbjct: 74 GLEMDLPQLF 83 >gi|295097139|emb|CBK86229.1| Predicted transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 230 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R A TQK + ++A+ E G S + + + + N + DW+ Sbjct: 5 LAGRLKEARAARGLTQKALGDLVGVSQAAIQKIETGKASQTTK-LVEIANALGVMPDWLS 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 GE + L A Sbjct: 64 SGEGAMLNDGKQSGAALLTNAA 85 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK R +G++Q G L+G+ + + E G+ K +I DW+ G+ Sbjct: 9 LKEARAARGLTQKALGDLVGVSQAAIQKIETGKASQTTK-LVEIANALGVMPDWLSSGE 66 >gi|260430057|ref|ZP_05784032.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260418980|gb|EEX12235.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 184 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VGT I+ +RK+ T + +A + ++L E G SIR + + ++ Sbjct: 2 NRQVGTDIRALRKSRGLTLQALAEATGRSAGWLSLIERGQAEPSIRDLEKIAALFGLTIS 61 Query: 89 WIYD 92 + + Sbjct: 62 FFFR 65 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++RK +G++ + G LS E+G+ P I+ KI + + + + Sbjct: 9 IRALRKSRGLTLQALAEATGRSAGWLSLIERGQAEPSIRDLEKIAALFGLTISFFF 64 >gi|302555539|ref|ZP_07307881.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302473157|gb|EFL36250.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 229 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V R++ +R+ + T + A A + ++ E G S+ L L Y + + Sbjct: 41 VAPRLRALRRQASLTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLALARVYSTTVSELL 100 Query: 92 DGEVIDRR 99 +DR Sbjct: 101 GETAVDRD 108 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+++R+ ++ + G+ + LS E G+ P + + +V + + G+ Sbjct: 45 LRALRRQASLTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLALARVYSTTVSELL-GET 103 Query: 178 VIVPKSIKRAKGNQSS 193 + ++ RA + + Sbjct: 104 AVDRDAVVRAADMEPT 119 >gi|240141318|ref|YP_002965798.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240011295|gb|ACS42521.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 209 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RKA N + E+A + +S ++ E + ++ L ++S + + Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLTTIWRLSQALDVSIERV 85 Query: 91 YDGEVIDRRYEDVT 104 + E + Sbjct: 86 LATSDEEPFIERFS 99 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-F 174 ++ +RK +S E + G+ S +S E+ T P + ++ Q ++ + Sbjct: 29 KTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLTTIWRLSQALDVSIERVLAT 88 Query: 175 GDEVIVPKSIKRAKGNQ 191 DE + RA + Sbjct: 89 SDEEPFIERFSRADTPR 105 >gi|197286562|ref|YP_002152434.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227357636|ref|ZP_03841989.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194684049|emb|CAR45374.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227162346|gb|EEI47350.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 105 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 34/88 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +RK + K A + ++ +E G SI + + ++++ + Sbjct: 12 IGQRIRHLRKNLKYSGKLFAKELGISQQQLSRYERGTNRISIEFVYLITEKFDVHISYFL 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + + +++ A +K Sbjct: 72 QSNYMINIEQQRNIQEKNSLLIAEACIK 99 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 36/82 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + IG R++ +RK+ S F K LG+ LS YE+G I+ I + H+ Sbjct: 9 NFRIGQRIRHLRKNLKYSGKLFAKELGISQQQLSRYERGTNRISIEFVYLITEKFDVHIS 68 Query: 171 WIYFGDEVIVPKSIKRAKGNQS 192 + + +I + + + S Sbjct: 69 YFLQSNYMINIEQQRNIQEKNS 90 >gi|187777637|ref|ZP_02994110.1| hypothetical protein CLOSPO_01229 [Clostridium sporogenes ATCC 15579] gi|187774565|gb|EDU38367.1| hypothetical protein CLOSPO_01229 [Clostridium sporogenes ATCC 15579] Length = 78 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 39/76 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R+ G++Q + GKL+G+ ++ E + P I A I ++ + ++ ++ Sbjct: 1 MKNRIKEFREVFGLTQEQLGKLVGVSRQAINAIETEKFEPSIWLAYDICKIFHRSIEEVF 60 Query: 174 FGDEVIVPKSIKRAKG 189 +E ++++G Sbjct: 61 LFEESERKSRGRQSRG 76 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK+ R+ TQ+++ A+N E SI A + + S + ++ Sbjct: 3 NRIKEFREVFGLTQEQLGKLVGVSRQAINAIETEKFEPSIWLAYDICKIFHRSIEEVFLF 62 Query: 94 EVIDRRYE 101 E +R+ Sbjct: 63 EESERKSR 70 >gi|148379505|ref|YP_001254046.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932694|ref|YP_001383881.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935321|ref|YP_001387431.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288989|emb|CAL83077.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928738|gb|ABS34238.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931235|gb|ABS36734.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 370 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 34/90 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ+++A +AV+ +E+G I + + ++ D + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVTIDTLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ E + + + Sbjct: 66 NFKIELSDEEVMDIFNECEKLFSNGEIHKA 95 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + +RK+K ++Q + +G+ + +S +E G + P+I I Sbjct: 1 MEKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVT 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + + Sbjct: 61 IDTLLNFKIELSDEEV 76 >gi|73663694|ref|YP_302475.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496209|dbj|BAE19530.1| putative truncated transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 187 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 29/85 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK R TQ+ ++ N ++ ++ +E+ + I L + IS D + Sbjct: 3 QISKTIKKERLRLGMTQEALSEYLNTTKTTISKWESEILYPDITMLPKLAKLFNISVDDL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG 115 + + E L Sbjct: 63 LNYSIAMTDEEIKKISISLSKMVNH 87 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +K R GM+Q + L +T+S +E P+I K+ ++ +D Sbjct: 1 MIQISKTIKKERLRLGMTQEALSEYLNTTKTTISKWESEILYPDITMLPKLAKLFNISVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + + IK+ + S + Sbjct: 61 DLLNYSIAMTDEEIKKISISLSKMVNHTSYSE 92 >gi|89069298|ref|ZP_01156661.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] gi|89045174|gb|EAR51242.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] Length = 202 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 PE K +G ++ RK+ T +++A GA ++ E + S+ + Sbjct: 8 PEQSTDSK-IGAALRRYRKSQGMTLRDVAEGAGLSTGFISQAERDIAVPSLSSLRKIAQV 66 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKK 107 +S I V + ++ Sbjct: 67 LGVSLQDILPETVPAMEASRRSERR 91 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + ++ IGA L+ RK +GM+ + + G+ +S E+ +P + RK Sbjct: 3 DRQAWPEQSTDSKIGAALRRYRKSQGMTLRDVAEGAGLSTGFISQAERDIAVPSLSSLRK 62 Query: 161 IKQVTKKHLDWIY 173 I QV L I Sbjct: 63 IAQVLGVSLQDIL 75 >gi|295094216|emb|CBK83307.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 108 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R+ ++ TQ+ +A N ++ +E G + I + +YL Y +S D+I Sbjct: 14 ERIRGLREDHDFTQQYVARYLNTSQTMYARYERGASALPIHHLIYLTELYNVSSDYILGI 73 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 YE+ + + + K KG Sbjct: 74 TNNPVPYEEYYREAAVTDQDPRSPGKYNIHWKG 106 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R+D +Q + L + + YE+G + I + ++ D+I Sbjct: 12 YIERIRGLREDHDFTQQYVARYLNTSQTMYARYERGASALPIHHLIYLTELYNVSSDYIL 71 >gi|291458792|ref|ZP_06598182.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418709|gb|EFE92428.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 163 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 16/133 (12%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYALYLR 80 R+ +G RI+ +R TQKE+ I E + + +E+G + Sbjct: 6 RREPLMTIGERIRRVRMQRGLTQKELGIALGFPERSADVRIAQYESGTRKPKDDLIRQIA 65 Query: 81 NEYEI------SFDW-IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 ++ S D+ Y G + + T +D ++ R K Sbjct: 66 EVLQVNPHAISSVDYGTYIGLMYTLFDLEDTYGMHVDEIDGELCIRLDRHRKDYP----- 120 Query: 134 KLLGMPNSTLSNY 146 +L M + Sbjct: 121 ELFDMMQHWYEAW 133 Score = 43.4 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST----LSNYEQGRTIPEIKP 157 +R IG R++ +R +G++Q E G LG P + ++ YE G P+ Sbjct: 1 MFNFTRREPLMTIGERIRRVRMQRGLTQKELGIALGFPERSADVRIAQYESGTRKPKDDL 60 Query: 158 ARKIKQVTKKHL 169 R+I +V + + Sbjct: 61 IRQIAEVLQVNP 72 >gi|228925132|ref|ZP_04088242.1| hypothetical protein bthur0011_60040 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834471|gb|EEM80000.1| hypothetical protein bthur0011_60040 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 108 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 28/82 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ ++RK TQ +++ N + +E G + + + IS D ++ Sbjct: 4 LSKRLAELRKKRGYTQADISHCLNIARTTYANWEYGKADPDADSIMRIAELHNISIDELF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + D A Sbjct: 64 GRNNPLESKLESIKVALADIPA 85 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK +G +Q + L + +T +N+E G+ P+ +I ++ +D Sbjct: 1 MSHLSKRLAELRKKRGYTQADISHCLNIARTTYANWEYGKADPDADSIMRIAELHNISID 60 Query: 171 WIYFGDEVIVPK 182 ++ + + K Sbjct: 61 ELFGRNNPLESK 72 >gi|227538776|ref|ZP_03968825.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241285|gb|EEI91300.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 220 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK +R +Q+ A N ++ +E I AL + N + I + Sbjct: 3 NIGYNIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNL 62 Query: 91 YDGEVIDRRYEDVTNK 106 D ++ + + Sbjct: 63 IDKKLSVNEILNFNDY 78 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K +R KG+SQ F +L + +S+YE+ R P+I A KI L + Sbjct: 7 NIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNLI 63 >gi|261344511|ref|ZP_05972155.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567421|gb|EFB72956.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 95 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 36/88 (40%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ K VG +I+ +R+++ + K+++ + + +ENG + + L + + Sbjct: 3 KRISKSVGLKIRTLRESHGMSGKKLSELMGISQQHQSRYENGEVNIHVDTIYLLSQIFSV 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYA 113 + + + + ++ A Sbjct: 63 EPIYFFSEFDRHNNHNEENALQKNYYTA 90 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++++R+ GMS + +L+G+ S YE G + + Q+ + + + Sbjct: 13 IRTLRESHGMSGKKLSELMGISQQHQSRYENGEVNIHVDTIYLLSQIFSVEPIYFFSEFD 72 Query: 178 VIVPKSIKRA 187 + + A Sbjct: 73 RHNNHNEENA 82 >gi|254853777|ref|ZP_05243125.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|300765112|ref|ZP_07075099.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017] gi|258607157|gb|EEW19765.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|300514237|gb|EFK41297.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017] Length = 180 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|73668235|ref|YP_304250.1| XRE family transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72395397|gb|AAZ69670.1| transcriptional regulator, XRE family [Methanosarcina barkeri str. Fusaro] Length = 74 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 34/73 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K R ++Q + +G+ T+ E+G+ P ++ A K+ ++ ++ I+ Sbjct: 1 MKNNIKVYRAMHDLTQENLAEKVGVTRQTIHAIEKGKYDPSLELAFKLARLFDVRIEDIF 60 Query: 174 FGDEVIVPKSIKR 186 ++ S ++ Sbjct: 61 LYEDRKARNSERK 73 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK R ++ TQ+ +A ++ E G S+ A L +++ + I+ Sbjct: 3 NNIKVYRAMHDLTQENLAEKVGVTRQTIHAIEKGKYDPSLELAFKLARLFDVRIEDIFLY 62 Query: 94 EVIDRRYED 102 E R + Sbjct: 63 EDRKARNSE 71 >gi|228912155|ref|ZP_04075870.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228942096|ref|ZP_04104636.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975025|ref|ZP_04135584.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981664|ref|ZP_04141959.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|228777776|gb|EEM26048.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|228784546|gb|EEM32566.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817430|gb|EEM63515.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228847492|gb|EEM92431.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|324328858|gb|ADY24118.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942746|gb|AEA18642.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 109 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 39/92 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G+RIK++RK+ Q E+A + ++L+E+ S + +S D+ Sbjct: 3 ETIGSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADY 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 I E+ + K D I R+ + Sbjct: 63 IMGLSKHKTFDEETSKKITDDVEDIMKRINQL 94 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 7/95 (7%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 +R+K +RK M Q E +G+ + +S YE + P + I +VT D+I Sbjct: 7 SRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIMGL 66 Query: 174 -----FGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 F +E + + + DK+S Sbjct: 67 SKHKTFDEETSKKITDDVEDIMKRINQLPADKRSK 101 >gi|169344592|ref|ZP_02865558.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169297202|gb|EDS79314.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 415 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K RK N TQ+EMA S ++ +E+G +I + L S D + Sbjct: 11 ENLKSFRKQNKLTQEEMAKKLGIARSTLSYYEHGSIEPNIFVLISLSKLMNCSLDNLIGL 70 Query: 94 EVIDRRYEDVTNKKR 108 N K Sbjct: 71 NKEKIIPMPFENNKY 85 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D LKS RK ++Q E K LG+ STLS YE G P I + ++ Sbjct: 1 MIEIDWSIFSENLKSFRKQNKLTQEEMAKKLGIARSTLSYYEHGSIEPNIFVLISLSKLM 60 Query: 166 KKHLDWIY-FGDEVIVPKSIKRAK 188 LD + E I+P + K Sbjct: 61 NCSLDNLIGLNKEKIIPMPFENNK 84 >gi|148380241|ref|YP_001254782.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|148289725|emb|CAL83830.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] Length = 79 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 39/77 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +LK R++ G++Q + G+L+G+ ++ E + P I A I +V ++ + Sbjct: 1 MMKNKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEV 60 Query: 173 YFGDEVIVPKSIKRAKG 189 + +E ++++G Sbjct: 61 FLFEESERKSRSEKSRG 77 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 29/73 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R+ TQ+++ A+N E SI A + + + + ++ Sbjct: 4 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVFLF 63 Query: 94 EVIDRRYEDVTNK 106 E +R+ ++ Sbjct: 64 EESERKSRSEKSR 76 >gi|46907036|ref|YP_013425.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|226223423|ref|YP_002757530.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823927|ref|ZP_05228928.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|254931186|ref|ZP_05264545.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|254993305|ref|ZP_05275495.1| transcription regulator [Listeria monocytogenes FSL J2-064] gi|255521055|ref|ZP_05388292.1| transcription regulator [Listeria monocytogenes FSL J1-175] gi|46880302|gb|AAT03602.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|225875885|emb|CAS04589.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293582734|gb|EFF94766.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|293593153|gb|EFG00914.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|328467356|gb|EGF38436.1| transcription regulator [Listeria monocytogenes 1816] gi|332311210|gb|EGJ24305.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 180 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|322376311|ref|ZP_08050804.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321282118|gb|EFX59125.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 158 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ + A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q +F +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|313204771|ref|YP_004043428.1| helix-turN-helix domain protein [Paludibacter propionicigenes WB4] gi|312444087|gb|ADQ80443.1| helix-turn-helix domain protein [Paludibacter propionicigenes WB4] Length = 186 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+ +Q+E+A A + EN + +I + I Sbjct: 3 EIGEKIKELRRKKGLSQEELAEQAGINLRTIQRIENNESEPRGNTMHLICKVLDIHAEDI 62 Query: 91 YDGEVIDRRYEDV 103 D V Sbjct: 63 LDYGKQTDNSFMV 75 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++K +R+ KG+SQ E + G+ T+ E + P I +V H + Sbjct: 1 MNEIGEKIKELRRKKGLSQEELAEQAGINLRTIQRIENNESEPRGNTMHLICKVLDIHAE 60 Query: 171 WIY 173 I Sbjct: 61 DIL 63 >gi|309776164|ref|ZP_07671155.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308916115|gb|EFP61864.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 90 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 S KS + + E ++ K++G +I +R N TQ E+A A ++ + + ENG+ Sbjct: 2 ESNKSTRIRPIPYDKEDKELLKEMGKKINRLRVEKNLTQNELANMAGVHKNFICIIENGV 61 Query: 69 CSTSIRYALYLRNEYEISFDWIYDG 93 + S+ ++ + S + G Sbjct: 62 QNPSLLSLYHIIRVLDTSLYEFFGG 86 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++ +R +K ++Q E + G+ + + E G P + I +V L Sbjct: 24 EMGKKINRLRVEKNLTQNELANMAGVHKNFICIIENGVQNPSLLSLYHIIRVLDTSLYEF 83 Query: 173 YFG 175 + G Sbjct: 84 FGG 86 >gi|282600828|ref|ZP_05979816.2| conserved domain protein [Subdoligranulum variabile DSM 15176] gi|282571049|gb|EFB76584.1| conserved domain protein [Subdoligranulum variabile DSM 15176] Length = 82 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + EI++ ++K R + TQ +A +N E G + +I + Sbjct: 9 LASEIKEARMAKNLKLKAARAEKDMTQGALAEAVGVSRQTINAIEKGEYNPTINLCKSIC 68 Query: 81 NEYEISFDWIYDGE 94 + + D ++ E Sbjct: 69 KALDKTLDDLFWEE 82 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK+ R +K M+Q + +G+ T++ E+G P I + I + K LD Sbjct: 18 MAKNLKLKAARAEKDMTQGALAEAVGVSRQTINAIEKGEYNPTINLCKSICKALDKTLDD 77 Query: 172 IYFGD 176 +++ + Sbjct: 78 LFWEE 82 >gi|224824859|ref|ZP_03697966.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603352|gb|EEG09528.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 182 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 D+G R+K +R+ +Q+E+A A + ++L E S S+ + L +S D+ Sbjct: 2 DIGPRLKLVRERYKLSQRELAKRAGVTNATISLIEQNRVSPSVSSLVKLLEGIPMSLADF 61 Query: 90 IYDGEVIDRRYEDVTNKKRLD 110 E ++ D Sbjct: 62 FTFDEPPRENRYVFRPGEQPD 82 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 31/75 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +SQ E K G+ N+T+S EQ R P + K+ + L + DE Sbjct: 7 LKLVRERYKLSQRELAKRAGVTNATISLIEQNRVSPSVSSLVKLLEGIPMSLADFFTFDE 66 Query: 178 VIVPKSIKRAKGNQS 192 G Q Sbjct: 67 PPRENRYVFRPGEQP 81 >gi|254474485|ref|ZP_05087871.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] gi|214028728|gb|EEB69563.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] Length = 204 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 24/78 (30%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E VG I+ RK N T + + + ++ E + S+ + Sbjct: 1 MPQEKTIQEPKVGPTIRKRRKQLNMTLQALCDASGVSVGYLSQVERDNATPSLGTLAQIA 60 Query: 81 NEYEISFDWIYDGEVIDR 98 E+ D+ Sbjct: 61 AALEVGLDYFISASKPSD 78 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + +K + +G ++ RK M+ G+ LS E+ P + +I Sbjct: 1 MPQEKTIQEPKVGPTIRKRRKQLNMTLQALCDASGVSVGYLSQVERDNATPSLGTLAQIA 60 Query: 163 QVTKKHLDWIY 173 + LD+ Sbjct: 61 AALEVGLDYFI 71 >gi|210612865|ref|ZP_03289498.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] gi|210151386|gb|EEA82394.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] Length = 223 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 30/195 (15%) Query: 25 IRQYWKDV---GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + Y K + G I+ IRK Q+E+A +++ E G+ + + + Sbjct: 1 MEHYEKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMD 60 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 ++ + + GE I +K +D +S + + Sbjct: 61 VLGVTPNELLSGE---------WKYIDHTEPYIMDIIKRE-QDFNVSLDY------LSEN 104 Query: 142 TLSNYEQGRTIPEIKPARK-IKQVTK---KHLDWIYFGDEVIVPKSIKR-------AKGN 190 + E + I ++ + ++I + I+R +G Sbjct: 105 EFFDNENEYRFYMETILIRYISNYLSNEVVEIEELMEIKQLIQRQKIERMMKVHKEMRGL 164 Query: 191 QSSKKSKKDKKSSNP 205 ++ K+ K NP Sbjct: 165 DRYREQPKEYKYHNP 179 >gi|251798465|ref|YP_003013196.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546091|gb|ACT03110.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 112 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +++G I+ IRK +Q+++A+ A S + E G S ++ + + + Sbjct: 1 MNEISRNIGENIRAIRKQKGFSQEQLALRAEINGSYMGQVERGEKSPTVDVLSKIAHALQ 60 Query: 85 ISFDWIYD 92 + + Sbjct: 61 CPLEQLVH 68 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++IRK KG SQ + + S + E+G P + KI + L+ + Sbjct: 10 ENIRAIRKQKGFSQEQLALRAEINGSYMGQVERGEKSPTVDVLSKIAHALQCPLEQLV 67 >gi|144901303|emb|CAM78167.1| transcriptional regulator, Cro/CI family [Magnetospirillum gryphiswaldense MSR-1] Length = 131 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 1/105 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VGTRI++ R +Q++MA + +E G+ S + + + Sbjct: 21 RHVGTRIRERRIMLGLSQQQMADLIGVTYQQAHKYERGINRISAGRLYEIAQVLGVPVSY 80 Query: 90 IYDG-EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 ++G + + L+ + +++ + + +SQ+ Sbjct: 81 FFEGLDNQRATDLTARQRMCLELARNFSSIQNEKHQEALSQMARA 125 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E N+ +G R++ R G+SQ + L+G+ YE+G Sbjct: 3 EEKAPPISRPVNRANDTDRHVGTRIRERRIMLGLSQQQMADLIGVTYQQAHKYERGINRI 62 Query: 154 EIKPARKIKQVTKKHLDWIYFG 175 +I QV + + + G Sbjct: 63 SAGRLYEIAQVLGVPVSYFFEG 84 >gi|150398353|ref|YP_001328820.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029868|gb|ABR61985.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 182 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R +N +Q+E+A A S ++L E+ + S+ + + I Sbjct: 4 DIGNRLRRVRLRHNLSQRELAKRAGVTNSTISLIESNSSNPSVGALKRILDGIPIGLAEF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E R ++ ++ + I Sbjct: 64 FSFEPEKPRKAFYAAEELVEIGKGPISYRQI 94 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R +SQ E K G+ NST+S E + P + ++I L + Sbjct: 7 NRLRRVRLRHNLSQRELAKRAGVTNSTISLIESNSSNPSVGALKRILDGIPIGLAEFFSF 66 Query: 176 DEVIVPKSIKRAKG 189 + K+ A+ Sbjct: 67 EPEKPRKAFYAAEE 80 >gi|83594673|ref|YP_428425.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577587|gb|ABC24138.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 125 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G +I+ +R+ TQ ++A + ++ FE G TSI+ + + Sbjct: 2 ELGQQIGRKIRTLRERRGLTQSQLASLLGKSGETISNFERGKVVTSIQTLDQMAKVLNVR 61 Query: 87 FDWIYDG 93 +DG Sbjct: 62 LMDFFDG 68 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 41/76 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++++R+ +G++Q + LLG T+SN+E+G+ + I+ ++ +V L + G Sbjct: 11 IRTLRERRGLTQSQLASLLGKSGETISNFERGKVVTSIQTLDQMAKVLNVRLMDFFDGVA 70 Query: 178 VIVPKSIKRAKGNQSS 193 V RA+ +SS Sbjct: 71 VGAADRQHRAERARSS 86 >gi|328958082|ref|YP_004375468.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] gi|328674406|gb|AEB30452.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] Length = 63 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I+ +RK TQ ++A N VN EN +++ A L D ++ Sbjct: 3 NKIEQLRKDKGLTQADLAKACNVTRQTVNAIENNKYDPTLQLAFSLSKILNTEVDKLFTP 62 Query: 94 E 94 + Sbjct: 63 D 63 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +++ +RKDKG++Q + K + T++ E + P ++ A + ++ +D ++ Sbjct: 1 MQNKIEQLRKDKGLTQADLAKACNVTRQTVNAIENNKYDPTLQLAFSLSKILNTEVDKLF 60 Query: 174 FGD 176 D Sbjct: 61 TPD 63 >gi|324994099|gb|EGC26013.1| transcriptional regulator [Streptococcus sanguinis SK678] gi|332366386|gb|EGJ44137.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 71 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFW 60 Query: 175 GDEVIVPKS 183 ++ +S Sbjct: 61 EPQLTDEES 69 >gi|324991744|gb|EGC23676.1| transcriptional regulator [Streptococcus sanguinis SK353] gi|325686944|gb|EGD28968.1| transcriptional regulator [Streptococcus sanguinis SK72] gi|325688753|gb|EGD30762.1| transcriptional regulator [Streptococcus sanguinis SK115] gi|325697682|gb|EGD39567.1| transcriptional regulator [Streptococcus sanguinis SK160] gi|327459306|gb|EGF05652.1| transcriptional regulator [Streptococcus sanguinis SK1] gi|327462426|gb|EGF08751.1| transcriptional regulator [Streptococcus sanguinis SK1057] gi|332362960|gb|EGJ40749.1| transcriptional regulator [Streptococcus sanguinis SK49] gi|332364603|gb|EGJ42372.1| transcriptional regulator [Streptococcus sanguinis SK1059] Length = 71 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFW 60 Query: 175 GDEVIVPKS 183 ++ S Sbjct: 61 EPQLTDEDS 69 >gi|319936190|ref|ZP_08010610.1| hypothetical protein HMPREF9488_01442 [Coprobacillus sp. 29_1] gi|319808764|gb|EFW05297.1| hypothetical protein HMPREF9488_01442 [Coprobacillus sp. 29_1] Length = 84 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R +Q+++A + V+ +E+ + S+ + Y S D+I Sbjct: 3 IGERLKTLRLEAGLSQRQVAETLKMSKPIVSQYESNQRTPSLGKLIRFSRFYNASLDYI 61 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG RLK++R + G+SQ + + L M +S YE + P + + + LD+ Sbjct: 1 MSIGERLKTLRLEAGLSQRQVAETLKMSKPIVSQYESNQRTPSLGKLIRFSRFYNASLDY 60 Query: 172 I 172 I Sbjct: 61 I 61 >gi|309792582|ref|ZP_07687044.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6] gi|308225396|gb|EFO79162.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6] Length = 206 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R++ +R+ + + +A + + ++L ENG S S+ + + Sbjct: 31 DVGARLRFLREGRQLSIRALAEASGLAVNTLSLIENGKTSPSVSTLQQVAVALGVPITSF 90 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++ + R + +R L + G++Q Sbjct: 91 FEPDSPRSRVVYMPASQRRSTNLPHGMLSDL--GAGLAQRTI 130 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ARL+ +R+ + +S + G+ +TLS E G+T P + +++ + + Sbjct: 34 ARLRFLREGRQLSIRALAEASGLAVNTLSLIENGKTSPSVSTLQQVAVALGVPITSFFEP 93 Query: 176 D 176 D Sbjct: 94 D 94 >gi|295697360|ref|YP_003590598.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412962|gb|ADG07454.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 70 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K++R+ T +E+A A +S + E G + + + + E+ + Sbjct: 7 MGERLKELRRERGMTVRELAEKAGVSQSYIYAVEAGTRGSRVGKLIKIARALEVDLAALV 66 Query: 92 DGEV 95 + E Sbjct: 67 EDEP 70 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G RLK +R+++GM+ E + G+ S + E G + KI + + L + Sbjct: 7 MGERLKELRRERGMTVRELAEKAGVSQSYIYAVEAGTRGSRVGKLIKIARALEVDLAALV 66 Query: 174 FGD 176 + Sbjct: 67 EDE 69 >gi|326203738|ref|ZP_08193601.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325986178|gb|EGD47011.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 169 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK IRK+ +Q+E+AI N + ++ +E G+ + + E + Sbjct: 4 ENIKAIRKSKGLSQEELAIKLNVVRQTISKWEQGLSVPDSDILISISEVLETPVSTLLGE 63 Query: 94 EVIDRRYEDVT 104 VI+ + +D+ Sbjct: 64 TVIESKVDDLK 74 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQEELAIKLNVVRQTISKWEQGLSVPDSDILISISEVLETPVSTL 60 Query: 173 YFGDEVIVPKSIKRAK 188 E ++ + K Sbjct: 61 LG--ETVIESKVDDLK 74 >gi|228905073|ref|ZP_04069107.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis IBL 4222] gi|228854568|gb|EEM99192.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis IBL 4222] Length = 125 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|229139745|ref|ZP_04268313.1| HTH-type transcriptional regulator ansR [Bacillus cereus BDRD-ST26] gi|228643703|gb|EEK99966.1| HTH-type transcriptional regulator ansR [Bacillus cereus BDRD-ST26] Length = 128 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 6 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 63 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D Sbjct: 1 MRRMLERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVD 60 Query: 171 WIY 173 +I Sbjct: 61 YIL 63 >gi|222825165|dbj|BAH22322.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 120 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 2/98 (2%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K +G RI+ R +Q+++ + +E G + L + Sbjct: 7 IDKQIGERIRKRRLMCGLSQRDLGKKLEISFQHIQGYETGEVRLIVDRLYNLAEALSVDM 66 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + D + I ++ RK K Sbjct: 67 SYFFTKASEDLHDNAFRSDVG--SKEISRLVREYRKIK 102 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R G+SQ + GK L + + YE G + + + + + + Sbjct: 13 ERIRKRRLMCGLSQRDLGKKLEISFQHIQGYETGEVRLIVDRLYNLAEALSVDMSYFFTK 72 Query: 176 -DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 E + + + G++ + ++ + Sbjct: 73 ASEDLHDNAFRSDVGSKEISRLVREYRK 100 >gi|196032547|ref|ZP_03099961.1| transcriptional regulator AnsR [Bacillus cereus W] gi|228946720|ref|ZP_04109027.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195995298|gb|EDX59252.1| transcriptional regulator AnsR [Bacillus cereus W] gi|228812937|gb|EEM59251.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 125 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|163857884|ref|YP_001632182.1| anaerobic benzoate catabolism transcriptional regulator [Bordetella petrii DSM 12804] gi|163261612|emb|CAP43914.1| aroK1 [Bordetella petrii] Length = 302 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 14/90 (15%) Query: 22 TPEIRQ--YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 +PE R+ + +G R++ +R T+K ++ E + E+G+ + SI L + Sbjct: 9 SPESRREPFLVALGERVRRLRAIRGMTRKSLSQATGVSERHLANLEHGVGNASILVLLQI 68 Query: 80 RNEYEI------------SFDWIYDGEVID 97 + S DW+ E++ Sbjct: 69 AKAFNCALAELVGDVTTESPDWLLIRELLS 98 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 12/94 (12%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 E +++ A+G R++ +R +GM++ + G+ L+N E G Sbjct: 2 NQALDKESPESRREPFLVALGERVRRLRAIRGMTRKSLSQATGVSERHLANLEHGVGNAS 61 Query: 155 IKPARKIKQVTKK------------HLDWIYFGD 176 I +I + DW+ + Sbjct: 62 ILVLLQIAKAFNCALAELVGDVTTESPDWLLIRE 95 >gi|119716897|ref|YP_923862.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides sp. JS614] gi|119537558|gb|ABL82175.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides sp. JS614] Length = 508 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D RK TQ ++A +SA+N E G + S+ + + Sbjct: 5 YKNRIGNLIRDARKHRGLTQHQLADLLGTSQSAINRIEKGHQNLSLEMLARIGAALD 61 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ RK +G++Q + LLG S ++ E+G ++ +I Sbjct: 11 NLIRDARKHRGLTQHQLADLLGTSQSAINRIEKGHQNLSLEMLARIGAALD 61 >gi|29377137|ref|NP_816291.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227519665|ref|ZP_03949714.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227554145|ref|ZP_03984192.1| transcriptional regulator [Enterococcus faecalis HH22] gi|229549226|ref|ZP_04437951.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255971941|ref|ZP_05422527.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1] gi|256616839|ref|ZP_05473685.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256763285|ref|ZP_05503865.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3] gi|256853958|ref|ZP_05559323.1| transcriptional regulator [Enterococcus faecalis T8] gi|256957887|ref|ZP_05562058.1| helix-turn-helix domain-containing protein [Enterococcus faecalis DS5] gi|256961092|ref|ZP_05565263.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis Merz96] gi|257079824|ref|ZP_05574185.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis JH1] gi|257081830|ref|ZP_05576191.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|257084372|ref|ZP_05578733.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257087629|ref|ZP_05581990.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis D6] gi|257090791|ref|ZP_05585152.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|257416836|ref|ZP_05593830.1| helix-turn-helix domain-containing protein [Enterococcus faecalis AR01/DG] gi|257420051|ref|ZP_05597045.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|293384038|ref|ZP_06629932.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293386851|ref|ZP_06631421.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294779476|ref|ZP_06744872.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300861098|ref|ZP_07107185.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|307270635|ref|ZP_07551926.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307276897|ref|ZP_07558007.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290339|ref|ZP_07570254.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312900023|ref|ZP_07759340.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312902423|ref|ZP_07761629.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312908012|ref|ZP_07766995.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312953680|ref|ZP_07772517.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978460|ref|ZP_07790198.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|29344603|gb|AAO82361.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227072889|gb|EEI10852.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227176771|gb|EEI57743.1| transcriptional regulator [Enterococcus faecalis HH22] gi|229305463|gb|EEN71459.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255962959|gb|EET95435.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1] gi|256596366|gb|EEU15542.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256684536|gb|EEU24231.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3] gi|256710901|gb|EEU25944.1| transcriptional regulator [Enterococcus faecalis T8] gi|256948383|gb|EEU65015.1| helix-turn-helix domain-containing protein [Enterococcus faecalis DS5] gi|256951588|gb|EEU68220.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis Merz96] gi|256987854|gb|EEU75156.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis JH1] gi|256989860|gb|EEU77162.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256992402|gb|EEU79704.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256995659|gb|EEU82961.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis D6] gi|256999603|gb|EEU86123.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|257158664|gb|EEU88624.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ARO1/DG] gi|257161879|gb|EEU91839.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|291078518|gb|EFE15882.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291083685|gb|EFE20648.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294453433|gb|EFG21839.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|295113617|emb|CBL32254.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300850137|gb|EFK77887.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|306498532|gb|EFM68034.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306506320|gb|EFM75480.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306512945|gb|EFM81586.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310626103|gb|EFQ09386.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310628518|gb|EFQ11801.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310634093|gb|EFQ17376.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288609|gb|EFQ67165.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311292780|gb|EFQ71336.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315025573|gb|EFT37505.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315030296|gb|EFT42228.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315032780|gb|EFT44712.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035163|gb|EFT47095.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315143822|gb|EFT87838.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315148623|gb|EFT92639.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315149967|gb|EFT93983.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315151947|gb|EFT95963.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315159172|gb|EFU03189.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315162150|gb|EFU06167.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315168640|gb|EFU12657.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315170416|gb|EFU14433.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|315173738|gb|EFU17755.1| helix-turn-helix protein [Enterococcus faecalis TX1346] gi|315576252|gb|EFU88443.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315579167|gb|EFU91358.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315582897|gb|EFU95088.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|323481583|gb|ADX81022.1| helix-turn-helix/ cupin_2 family protein [Enterococcus faecalis 62] gi|327535878|gb|AEA94712.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 180 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 36/81 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + + ++++ + L Sbjct: 62 FSQQPLEQKIVYNEEESTLYY 82 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|83945188|ref|ZP_00957537.1| transcriptional regulator, XRE family protein [Oceanicaulis alexandrii HTCC2633] gi|83851358|gb|EAP89214.1| transcriptional regulator, XRE family protein [Oceanicaulis alexandrii HTCC2633] Length = 467 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 G R++ +RK +TQ + A N S +NL E + R L L +++ Sbjct: 11 GARLRRLRKELGQTQAQFAESLNVSPSYLNLLERNQRPVTARVLLSLAEAFDVDV 65 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GARL+ +RK+ G +Q +F + L + S L+ E+ + + + + + Sbjct: 8 LFAGARLRRLRKELGQTQAQFAESLNVSPSYLNLLERNQRPVTARVLLSLAEAFDVDVRA 67 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + +K A + K + D + Sbjct: 68 FAAESDRQLLADLKEAAADPVLKSTDLDARD 98 >gi|329577403|gb|EGG58858.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 180 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 36/81 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + + ++++ + L Sbjct: 62 FSQQPLEQKIAYNEEESTLYY 82 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|153941053|ref|YP_001389709.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936949|gb|ABS42447.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295317797|gb|ADF98174.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 181 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I+++RK N T K+++ S ++ EN S +I + + + + Sbjct: 4 EIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYF 63 Query: 91 YD 92 + Sbjct: 64 FK 65 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +++++RK+K ++ + + G+ S LS E + I +KI + + Sbjct: 3 NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITY 62 Query: 172 IYFGDEV--IVPKSIKRAKGNQSSKKSKKDKKSSN 204 + E+ + K +R SK K S N Sbjct: 63 FFKSPELHKFLVKKQEREVFELEGSSSKFIKLSGN 97 >gi|21283165|ref|NP_646253.1| phage repressor [Staphylococcus aureus subsp. aureus MW2] gi|300911879|ref|ZP_07129322.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21204605|dbj|BAB95301.1| phage repressor [Staphylococcus aureus subsp. aureus MW2] gi|300886125|gb|EFK81327.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 107 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK +RK NN + AI +S ++ +ENG + + N +++ +++ Sbjct: 6 EIGKLIKQLRKENNVNLTDFAIKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYL 65 Query: 91 YDGEVIDRRYED 102 Sbjct: 66 LLKNRQPENEVQ 77 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK+ ++ +F +G+ STLS YE G ++ +I K +++ + Sbjct: 11 IKQLRKENNVNLTDFAIKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYLLLKNR 70 Query: 178 VIVPKSIKRA 187 + RA Sbjct: 71 QPENEVQHRA 80 >gi|330719170|ref|ZP_08313770.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 286 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 4/92 (4%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW--- 89 G+ IK+IRK +Q+++ +S V+ EN S L L + ISFD Sbjct: 6 GSVIKEIRKLRGISQQQLGQLIG-SQSMVSRIENNKAEPSDHTLLLLCHALNISFDEYFD 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + G + LK + Sbjct: 65 MVYGTHASDTERLFDFVSQAYKTNNQNDLKKL 96 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 4/88 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY---F 174 +K IRK +G+SQ + G+L+G S +S E + P + D + + Sbjct: 9 IKEIRKLRGISQQQLGQLIG-SQSMVSRIENNKAEPSDHTLLLLCHALNISFDEYFDMVY 67 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 G + + ++ D K Sbjct: 68 GTHASDTERLFDFVSQAYKTNNQNDLKK 95 >gi|325568823|ref|ZP_08145116.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157861|gb|EGC70017.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 182 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 32/81 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 4 EIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEEF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + E + L Sbjct: 64 FREENAQHQVVYREEDSTLYY 84 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 2 NMEIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPE 61 Query: 171 WIYFGD 176 + + Sbjct: 62 EFFREE 67 >gi|324992002|gb|EGC23924.1| transcriptional regulator [Streptococcus sanguinis SK405] Length = 71 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFW 60 Query: 175 GDEVIVPKS 183 ++ S Sbjct: 61 DSQLTDEDS 69 >gi|319744446|gb|EFV96803.1| phage associated transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 74 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+D+R+ ++ TQK +A + + E G + + + L Y +S D++ Sbjct: 3 QRIRDLREDHDFTQKFVANLLSFSHTNYAKIERGEVALTADVLVQLSKLYNVSTDYLL 60 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D +Q LL ++ + E+G ++ ++ D++ Sbjct: 1 MYQRIRDLREDHDFTQKFVANLLSFSHTNYAKIERGEVALTADVLVQLSKLYNVSTDYLL 60 >gi|313122873|ref|YP_004033132.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279436|gb|ADQ60155.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 206 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +GT+IK RK TQKE+A + V +E G+ + + + + +IS Sbjct: 2 KIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVSE 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + ++ I + Sbjct: 62 LLGNDDAKPKNLVDLADAKVISIPILGTI 90 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++K RK KG++Q E +LG+ +T++++EQG + P K I + Sbjct: 1 MKIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVS 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSS 193 + D+ + A S Sbjct: 61 ELLGNDDAKPKNLVDLADAKVIS 83 >gi|309778439|ref|ZP_07673354.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308913802|gb|EFP59627.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 211 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 25 IRQYWKDV---GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + Y K + G I+ IRK Q+E+A +++ E GM + + + Sbjct: 1 MEHYEKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGMNYPTFDTLEKIMD 60 Query: 82 EYEISFDWIYDGE 94 ++ + + GE Sbjct: 61 VLGVTPNELLSGE 73 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++IRK +GM Q E +G+ +LS E+G P KI V + + G Sbjct: 13 ENIQTIRKHRGMKQQELADKIGINMQSLSKIERGMNYPTFDTLEKIMDVLGVTPNELLSG 72 Query: 176 D 176 + Sbjct: 73 E 73 >gi|296133185|ref|YP_003640432.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296031763|gb|ADG82531.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 184 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 32/79 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K + RI+++R+ + + + +A + +E+G + + + N++ Sbjct: 1 MSEQLKQIAARIRELREISGISLETLAQEFGISKETYQEYESGEVDIPVSFLYEVANKFN 60 Query: 85 ISFDWIYDGEVIDRRYEDV 103 + I GE V Sbjct: 61 VELTEILTGESPRLHIYSV 79 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 33/89 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ +R+ G+S + G+ T YE G + ++ L I G Sbjct: 10 ARIRELREISGISLETLAQEFGISKETYQEYESGEVDIPVSFLYEVANKFNVELTEILTG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + KG S +K+ K N Sbjct: 70 ESPRLHIYSVVRKGKGVSVDRRKEYKYQN 98 >gi|295700971|ref|YP_003608864.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440184|gb|ADG19353.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 190 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 32/90 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +RK +T E A A + ++ E G + SI + ++ + Sbjct: 14 MGSKIRALRKRLQRTLDETATAAGISKPFLSQVERGHATPSISSLAGIAQALGVTMQYFV 73 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ + + Sbjct: 74 ETPTEAKSVRRADERQYFSFADSANQFARL 103 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 P +G++++++RK + E G+ LS E+G P I I Q + Sbjct: 11 PLVMGSKIRALRKRLQRTLDETATAAGISKPFLSQVERGHATPSISSLAGIAQALGVTMQ 70 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 + + KS++RA Q Sbjct: 71 YFV--ETPTEAKSVRRADERQ 89 >gi|291544455|emb|CBL17564.1| Helix-turn-helix [Ruminococcus sp. 18P13] Length = 239 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDR 98 RK +QK+ A ++ ++ +E G+ + + + + + Y +S D++ Sbjct: 13 RKERKISQKQAASDLGISQALLSHYEKGIRECGLGFLVKIADYYNVSCDYLLGRTPEPE 71 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RK++ +SQ + LG+ + LS+YE+G + KI D++ Sbjct: 13 RKERKISQKQAASDLGISQALLSHYEKGIRECGLGFLVKIADYYNVSCDYLL 64 >gi|283783004|ref|YP_003373758.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|298253579|ref|ZP_06977369.1| transcriptional regulator [Gardnerella vaginalis 5-1] gi|283441892|gb|ADB14358.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|297532346|gb|EFH71234.1| transcriptional regulator [Gardnerella vaginalis 5-1] Length = 67 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ IR+ TQ+E+A V ENG + SI A + + ++ + I+ Sbjct: 3 NRLEQIRREKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIFIY 62 Query: 94 EVIDR 98 E + Sbjct: 63 EEDKK 67 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IR++KG++Q E L + T+ + E GR P I A KI + ++ I+ Sbjct: 1 MKNRLEQIRREKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEED 65 >gi|270299969|gb|ACZ68775.1| hypothetical protein SAP073A_008 [Staphylococcus aureus] Length = 72 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK+ R+ +Q+E+A +V+ +E+ S+ + + + + IS + + Sbjct: 2 KLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHL 61 Query: 91 YDGEVI 96 G+ Sbjct: 62 IKGDAR 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R+ KG SQ E +L + ++S +E + P + + + L+ Sbjct: 1 MKLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEH 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LIKGD 65 >gi|257077473|ref|ZP_05571834.1| predicted protein [Enterococcus faecalis JH1] gi|294779607|ref|ZP_06744998.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis PC1.1] gi|256985503|gb|EEU72805.1| predicted protein [Enterococcus faecalis JH1] gi|294453264|gb|EFG21675.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis PC1.1] Length = 128 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+ TQKE+A + S N E+G + + Y +S D++ + Sbjct: 8 ERLKQLRENKELTQKELADLLHMDRSVYNKIESGARPIRDNELIQFADFYNVSTDYLTNR 67 Query: 94 EVIDRRYEDVTN 105 E+ TN Sbjct: 68 TNNPIPPEEKTN 79 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + RLK +R++K ++Q E LL M S + E G + Sbjct: 1 MTIIKTNERLKQLRENKELTQKELADLLHMDRSVYNKIESGARPIRDNELIQFADFYNVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D++ +P K G Sbjct: 61 TDYLTNRTNNPIPPEEKTNVGQN 83 >gi|258516973|ref|YP_003193195.1| helix-turn-helix domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780678|gb|ACV64572.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 383 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 10/113 (8%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G ++ IR+A TQ ++A A A ENG + + + + + Sbjct: 3 QKIIGANLRRIREAKGWTQSQVADLAGISRVAYRNIENGNTTPKVSTLQNIASAVGVKLQ 62 Query: 89 WIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 ++ D + L+ + D Q E Sbjct: 63 DLFIPVRTLKGVRFRASKKMNSRDNILTEVAHWLDDFNYLERLLNDHKDYQFE 115 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IGA L+ IR+ KG +Q + L G+ N E G T P++ + I Sbjct: 1 MDQKIIGANLRRIREAKGWTQSQVADLAGISRVAYRNIENGNTTPKVSTLQNIASAVGVK 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 L ++ I +++K + S K + +D Sbjct: 61 LQDLF-----IPVRTLKGVRFRASKKMNSRDN 87 >gi|308235243|ref|ZP_07665980.1| transcriptional regulator [Gardnerella vaginalis ATCC 14018] gi|311115056|ref|YP_003986277.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946550|gb|ADP39254.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 157 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V I+ +R++ TQ+E+A +++ +ENG + S R + +++++S I Sbjct: 2 VSVNIRALRRSKKITQQELAEALGVSRNSIVRYENGTSAISTRLIDKICDKFKVSLFDIV 61 Query: 92 DGEVIDRRYEDVTNKK 107 + + + N K Sbjct: 62 HEKELSASDKYDLNMK 77 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++++R+ K ++Q E + LG+ +++ YE G + + KI K L I Sbjct: 5 NIRALRRSKKITQQELAEALGVSRNSIVRYENGTSAISTRLIDKICDKFKVSLFDIVHEK 64 Query: 177 E 177 E Sbjct: 65 E 65 >gi|196040012|ref|ZP_03107315.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196029271|gb|EDX67875.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 186 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 28/87 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I RK N T +E A A S ++ E G + S+ + + ++ Sbjct: 6 LGQTILSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E+ ++ + Sbjct: 66 INEIDTDSLISKKKDRKKVYRENSDHI 92 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G + S RK M+ EF G+ S +S E+G P + I + Sbjct: 1 MIHDRLGQTILSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 L ++ +E+ I + K + + D Sbjct: 61 LFTLFI-NEIDTDSLISKKKDRKKVYRENSD 90 >gi|149004582|ref|ZP_01829270.1| hypothetical protein CGSSp14BS69_01039 [Streptococcus pneumoniae SP14-BS69] gi|237650099|ref|ZP_04524351.1| hypothetical protein SpneC1_05127 [Streptococcus pneumoniae CCRI 1974] gi|237822301|ref|ZP_04598146.1| hypothetical protein SpneC19_08349 [Streptococcus pneumoniae CCRI 1974M2] gi|147757531|gb|EDK64557.1| hypothetical protein CGSSp14BS69_01039 [Streptococcus pneumoniae SP14-BS69] Length = 85 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++D+R+ ++ QK++A + SA E G + + + L + Y++S D++ Sbjct: 3 RRLRDLREDHDLPQKQIATILSFTNSAYAKIERGEHALTADVLVKLSDFYDVSTDYLL 60 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R+D + Q + +L NS + E+G K+ D++ Sbjct: 1 MYRRLRDLREDHDLPQKQIATILSFTNSAYAKIERGEHALTADVLVKLSDFYDVSTDYLL 60 >gi|116872182|ref|YP_848963.1| transcription regulator, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741060|emb|CAK20180.1| transcription regulator, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 180 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|94968442|ref|YP_590490.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550492|gb|ABF40416.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 179 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 38/99 (38%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 L+P + + + + + + I+++R+ +Q+++A+ + V+ Sbjct: 38 LDPEEPEQVIAPPQPAVHVPSHSSHSQLQIAQSIRNLRQRAGLSQRQLALRMQVPRTYVS 97 Query: 63 LFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 EN + ++ L +++ + G R + Sbjct: 98 KIENEKATPTLSSLERLAKALQVTLPDLLTGGQPSREEQ 136 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 36/91 (39%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 + V + I ++++R+ G+SQ + + +P + +S E + P + Sbjct: 49 PPQPAVHVPSHSSHSQLQIAQSIRNLRQRAGLSQRQLALRMQVPRTYVSKIENEKATPTL 108 Query: 156 KPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 ++ + + L + G + + ++ Sbjct: 109 SSLERLAKALQVTLPDLLTGGQPSREEQVRD 139 >gi|66396007|ref|YP_240340.1| ORF046 [Staphylococcus phage ROSA] gi|62636427|gb|AAX91538.1| ORF046 [Staphylococcus phage ROSA] Length = 107 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK +RK NN + A +S ++ +ENG + + N +++ +++ Sbjct: 6 EIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSGKIPMEDIAEIANALKVTPEYL 65 Query: 91 Y 91 Sbjct: 66 L 66 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK+ ++ +F +G+ STLS YE G ++ +I K +++ + Sbjct: 11 IKQLRKENNVNLTDFATKIGVNKSTLSRYENGSGKIPMEDIAEIANALKVTPEYLLLKNR 70 Query: 178 VIVPKSIKRA 187 + RA Sbjct: 71 QTENEVQHRA 80 >gi|325956268|ref|YP_004286878.1| DNA-binding membrane protein [Lactobacillus acidophilus 30SC] gi|325332833|gb|ADZ06741.1| DNA-binding membrane protein [Lactobacillus acidophilus 30SC] Length = 109 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 46/88 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++K +RK+ +SQ+++ K L + +SN++ R + +++ +I +V LD Sbjct: 1 MEFSDQIKQLRKENNLSQVQYAKKLYVTRQAVSNWKNNRNLLDLEMLIEINRVCHISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + GD+ + + K K ++K+K + Sbjct: 61 LILGDDNMNKMTQKLIKDTDENRKAKYN 88 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +IK +RK NN +Q + A AV+ ++N + + + IS D + Sbjct: 2 EFSDQIKQLRKENNLSQVQYAKKLYVTRQAVSNWKNNRNLLDLEMLIEINRVCHISLDQL 61 Query: 91 YDGEVIDRR 99 G+ + Sbjct: 62 ILGDDNMNK 70 >gi|315924082|ref|ZP_07920308.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622484|gb|EFV02439.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 67 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R A + +Q+++A ++ E G + +I+ + + + D ++ Sbjct: 5 RMKAARAARDLSQQQLADLVGVSRQTISAVEKGNYNPTIKLCVAICRALGKTLDELF 61 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K+ R + +SQ + L+G+ T+S E+G P IK I + K LD +++ Sbjct: 6 MKAARAARDLSQQQLADLVGVSRQTISAVEKGNYNPTIKLCVAICRALGKTLDELFWE 63 >gi|299770452|ref|YP_003732478.1| transcriptional regulator [Acinetobacter sp. DR1] gi|298700540|gb|ADI91105.1| transcriptional regulator [Acinetobacter sp. DR1] Length = 197 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +++++R A T +A SA++L E G S + L N Sbjct: 1 MEDINIRIAQQVRELRLARGYTLDILATRCQVSRSAISLIERGEASPTAVVLEKLANGLG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA--RLKS 120 + ++D ++ + + + + + ++ Sbjct: 61 VPLTQLFDIPQNNQSPQPMVRRTQQSEWKDPETGYIRR 98 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 32/93 (34%), Gaps = 3/93 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 +++ +R +G + + S +S E+G P K+ L ++ Sbjct: 10 QQVRELRLARGYTLDILATRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLFDI 69 Query: 174 -FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ P + + ++ ++ +P Sbjct: 70 PQNNQSPQPMVRRTQQSEWKDPETGYIRRQVSP 102 >gi|294778779|ref|ZP_06744198.1| DNA-binding protein [Bacteroides vulgatus PC510] gi|294447435|gb|EFG16016.1| DNA-binding protein [Bacteroides vulgatus PC510] Length = 101 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK+I N T +A + AV+ G S S+ L + + +S + + Sbjct: 4 RIKEIMSERNVTSAWLAEKVGISKVAVSNIVTGKSSPSLDNLLKIADALNVSITTLIGED 63 Query: 95 VIDRRYEDVTNK 106 + V Sbjct: 64 KEEEENVIVCPH 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 26/67 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K I ++ ++ + +G+ +SN G++ P + KI + + D+ Sbjct: 5 IKEIMSERNVTSAWLAEKVGISKVAVSNIVTGKSSPSLDNLLKIADALNVSITTLIGEDK 64 Query: 178 VIVPKSI 184 I Sbjct: 65 EEEENVI 71 >gi|114326843|ref|YP_744000.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315017|gb|ABI61077.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 225 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 28/78 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ T ++A+ A+ ++ ENG S S+ L + Sbjct: 44 IGAKVRRLRQRLGITAADLAVEADLSAGMLSKIENGSTSPSLATLQALSRALNTPISSFF 103 Query: 92 DGEVIDRRYEDVTNKKRL 109 R V L Sbjct: 104 SDFDERRDCSYVPAGMGL 121 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIGA+++ +R+ G++ + + LS E G T P + + + + + Sbjct: 43 AIGAKVRRLRQRLGITAADLAVEADLSAGMLSKIENGSTSPSLATLQALSRALNTPISSF 102 Query: 173 YFG-DEVIVPKSIKRAKGNQSSKKSKK 198 + DE + G ++ K Sbjct: 103 FSDFDERRDCSYVPAGMGLSIERRGTK 129 >gi|15801869|ref|NP_287889.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 EDL933] gi|15831130|ref|NP_309903.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. Sakai] gi|168749060|ref|ZP_02774082.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4113] gi|168755982|ref|ZP_02780989.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4401] gi|168762686|ref|ZP_02787693.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4501] gi|168769383|ref|ZP_02794390.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4486] gi|168775126|ref|ZP_02800133.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4196] gi|168782830|ref|ZP_02807837.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4076] gi|168788374|ref|ZP_02813381.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC869] gi|168799611|ref|ZP_02824618.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC508] gi|208811113|ref|ZP_03252946.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4206] gi|208815007|ref|ZP_03256186.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4045] gi|208820275|ref|ZP_03260595.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4042] gi|209400310|ref|YP_002270360.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4115] gi|217329459|ref|ZP_03445539.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. TW14588] gi|254792894|ref|YP_003077731.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. TW14359] gi|261224290|ref|ZP_05938571.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. FRIK2000] gi|261257454|ref|ZP_05949987.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. FRIK966] gi|291282394|ref|YP_003499212.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|12515475|gb|AAG56505.1|AE005376_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361341|dbj|BAB35299.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187769283|gb|EDU33127.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4196] gi|188016620|gb|EDU54742.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4113] gi|188999714|gb|EDU68700.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4076] gi|189356802|gb|EDU75221.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4401] gi|189361581|gb|EDU80000.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4486] gi|189367033|gb|EDU85449.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4501] gi|189371817|gb|EDU90233.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC869] gi|189377991|gb|EDU96407.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC508] gi|208724619|gb|EDZ74327.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4206] gi|208731655|gb|EDZ80343.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4045] gi|208740398|gb|EDZ88080.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4042] gi|209161710|gb|ACI39143.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4115] gi|209771738|gb|ACI84181.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771740|gb|ACI84182.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771742|gb|ACI84183.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771744|gb|ACI84184.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771746|gb|ACI84185.1| hypothetical protein ECs1876 [Escherichia coli] gi|217317898|gb|EEC26326.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. TW14588] gi|254592294|gb|ACT71655.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. TW14359] gi|290762267|gb|ADD56228.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|320189942|gb|EFW64594.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. EC1212] gi|320637202|gb|EFX07028.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. G5101] gi|320642569|gb|EFX11817.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H- str. 493-89] gi|320647922|gb|EFX16630.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H- str. H 2687] gi|320653523|gb|EFX21628.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659223|gb|EFX26812.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O55:H7 str. USDA 5905] gi|320664016|gb|EFX31203.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. LSU-61] gi|326341032|gb|EGD64825.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. 1125] gi|326343272|gb|EGD67039.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. 1044] Length = 185 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRLDPY 112 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDLIEM 88 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ +G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 66 FFSEPEKPDEPQV 78 >gi|65320391|ref|ZP_00393350.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|118478430|ref|YP_895581.1| ans operon repressor protein [Bacillus thuringiensis str. Al Hakam] gi|118417655|gb|ABK86074.1| ans operon repressor protein [Bacillus thuringiensis str. Al Hakam] Length = 128 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 6 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 63 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D Sbjct: 1 MRRMLERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVD 60 Query: 171 WIY 173 +I Sbjct: 61 YIL 63 >gi|310825925|ref|YP_003958282.1| DNA binding protein [Eubacterium limosum KIST612] gi|308737659|gb|ADO35319.1| DNA binding protein [Eubacterium limosum KIST612] Length = 113 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 2/82 (2%) Query: 17 YTLIITPEIRQYW--KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Y + T R + + RIK++RK TQ ++A + E G + SI Sbjct: 24 YNMKYTSRERNFKFGDKLKNRIKELRKEKGLTQLQLADAVGVSTRTIISLEKGQYNPSIM 83 Query: 75 YALYLRNEYEISFDWIYDGEVI 96 A + + + + +Y E Sbjct: 84 LAYKIARLFGTTIEALYCLEEN 105 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + N K D R+K +RK+KG++Q++ +G+ T+ + E+G+ P Sbjct: 24 YNMKYTSRERNFKFGDKL--KNRIKELRKEKGLTQLQLADAVGVSTRTIISLEKGQYNPS 81 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPK 182 I A KI ++ ++ +Y +E + + Sbjct: 82 IMLAYKIARLFGTTIEALYCLEENLKNE 109 >gi|301794241|emb|CBW36661.1| Phage transcriptional regulator [Streptococcus pneumoniae INV104] Length = 167 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 3/91 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +RK NN TQ+E+A + +ENG A L + + +S + Sbjct: 5 NRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLLGY 64 Query: 94 EVIDRRYEDVTN---KKRLDPYAIGARLKSI 121 + + L + ++K Sbjct: 65 SDLIADTDSDIKAMAYSHLLTFVDEKQIKEF 95 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 28/70 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R+K +RK+ ++Q E +P T+ +E G T + A+ + + Sbjct: 1 MYKMNRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPH 60 Query: 172 IYFGDEVIVP 181 + ++I Sbjct: 61 LLGYSDLIAD 70 >gi|261368821|ref|ZP_05981704.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569087|gb|EFB74622.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 112 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 37/79 (46%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E +++ RI + RK TQ+E+A ++ AV+ E+G + L Sbjct: 1 MEQEKELCIQEMARRIFERRKQLRLTQEELAEMSDMTTQAVSYAESGKRAMRPDSLRKLA 60 Query: 81 NEYEISFDWIYDGEVIDRR 99 +S D++ G+++D+ Sbjct: 61 AALCVSADYLLTGDIVDKD 79 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+ RK ++Q E ++ M +S E G+ RK+ D++ Sbjct: 11 EMARRIFERRKQLRLTQEELAEMSDMTTQAVSYAESGKRAMRPDSLRKLAAALCVSADYL 70 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 GD V I K Q Sbjct: 71 LTGDIVDKDLLILADKLRQ 89 >gi|255523840|ref|ZP_05390804.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255512402|gb|EET88678.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 190 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 39/89 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +DVG +IK++R N T KE++ N ++ E G+ + +I + +++ + Sbjct: 3 EDVGKKIKELRTNKNLTLKELSTKTNLSIGFLSQLERGLTAVAIDSLNNIAKALDVNLSY 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +++ + +K + + Sbjct: 63 FINEANHNKKIILRSYEKEVFQVENNQFI 91 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K +R +K ++ E + LS E+G T I I + +L + Sbjct: 7 KKIKELRTNKNLTLKELSTKTNLSIGFLSQLERGLTAVAIDSLNNIAKALDVNLSYFI 64 >gi|168204476|ref|ZP_02630481.1| transcriptional regulator [Clostridium perfringens E str. JGS1987] gi|170663962|gb|EDT16645.1| transcriptional regulator [Clostridium perfringens E str. JGS1987] Length = 184 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K IR N + E++ ++ + E G + ++ + N ++SF Sbjct: 8 IGNRLKTIRNNRNLSLSEVSEITGVSKAMLGQIERGQSNPTVSTLWKIANGLKVSFSMFI 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D D + + + +L Sbjct: 68 DENKEDLKVIYQRDITPIIEDDNKMKL 94 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK+IR ++ +S E ++ G+ + L E+G++ P + KI K Sbjct: 10 NRLKTIRNNRNLSLSEVSEITGVSKAMLGQIERGQSNPTVSTLWKIANGLKVSFSMFIDE 69 Query: 176 DEVIVPKSIKR 186 ++ + +R Sbjct: 70 NKEDLKVIYQR 80 >gi|163868981|ref|YP_001610211.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018658|emb|CAK02216.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R + +QK + + +E G+ S L + + ++ + Sbjct: 20 IGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQKLQVPIS-FF 78 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI----GARLKSIRKDKGMSQIEF 132 +++ N D Y A LK+ R+ + Q Sbjct: 79 YADLLTADIATKENPSHHDQYTYSEKEHALLKNFRELQPKKQKAI 123 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + N +D +IGAR++ R G+SQ G LG+ + YE+G Sbjct: 2 PTKNPHFQTKNSNFVDT-SIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVS 60 Query: 155 IKPARKIKQVTKKHLDWIY 173 +I Q + + + Y Sbjct: 61 AGCLLEIAQKLQVPISFFY 79 >gi|160878327|ref|YP_001557295.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426993|gb|ABX40556.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 141 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K++RK+ TQ+ +A N A + +E G + + L + Y I + + Sbjct: 6 IAKRLKELRKSFEYTQEFVASYLNIGRQAYSHYETGRNAPTTDTLYKLASLYHIPVNDLL 65 Query: 92 D 92 Sbjct: 66 K 66 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ I RLK +RK +Q L + S+YE GR P K+ + Sbjct: 1 MNNELIAKRLKELRKSFEYTQEFVASYLNIGRQAYSHYETGRNAPTTDTLYKLASLYHIP 60 Query: 169 LDWIYF 174 ++ + Sbjct: 61 VNDLLK 66 >gi|331092326|ref|ZP_08341153.1| hypothetical protein HMPREF9477_01796 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401559|gb|EGG81142.1| hypothetical protein HMPREF9477_01796 [Lachnospiraceae bacterium 2_1_46FAA] Length = 102 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 36/79 (45%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + ++G +IK IR+ NN +Q+++A + V+ +E + + +E+ Sbjct: 2 EEQTNIGEKIKRIRRENNLSQEDLARSLHTSRQTVSRWETNRSVPDLEMLEKVAFIFEME 61 Query: 87 FDWIYDGEVIDRRYEDVTN 105 + D +++++ E Sbjct: 62 VKDLLDVKMVNKNQEKQET 80 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K IR++ +SQ + + L T+S +E R++P+++ K+ + + + + Sbjct: 9 EKIKRIRRENNLSQEDLARSLHTSRQTVSRWETNRSVPDLEMLEKVAFIFEMEVKDLL 66 >gi|325662744|ref|ZP_08151338.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470981|gb|EGC74209.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium 4_1_37FAA] Length = 194 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK QK++A + + +E+G SI L + + ++ Sbjct: 9 IGERIKTLRKKRGYNQKDLATLLGKSLRTIQKYESGEIEVSIAMVNELAKVLDTTSTYLL 68 Query: 92 DGEVIDRRYE 101 + D +++ Sbjct: 69 GHQTGDFKFD 78 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ AIG R+K++RK +G +Q + LLG T+ YE G I ++ +V Sbjct: 1 MNEMEVSAIGERIKTLRKKRGYNQKDLATLLGKSLRTIQKYESGEIEVSIAMVNELAKVL 60 Query: 166 KKHLDWIY 173 ++ Sbjct: 61 DTTSTYLL 68 >gi|313116082|ref|ZP_07801505.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310621588|gb|EFQ05120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 120 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +++ RK TQ+++A + + E G + S L + +S D Sbjct: 9 KVLGEKVRTERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARVLPVSLDA 68 Query: 90 IYDGEVIDRRYEDVTNKK 107 + + E + Sbjct: 69 LITPGMDKTEIELKEFNR 86 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G ++++ RK G++Q + + + ++N E+G P + I +V L Sbjct: 7 DLKVLGEKVRTERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARVLPVSL 66 Query: 170 DWIYF 174 D + Sbjct: 67 DALIT 71 >gi|331673630|ref|ZP_08374393.1| putative transcription regulator [Escherichia coli TA280] gi|331068903|gb|EGI40295.1| putative transcription regulator [Escherichia coli TA280] Length = 154 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 33/104 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K+ R A +Q+ A S ++ E G + S+ L + I + Sbjct: 9 FGQRVKEFRIAIGLSQEAFADRCGFARSYMSRIERGCSNASLDAIEVLADALRIEPWQLL 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + ++V D L S R + + Sbjct: 69 ASDSRKPDDQEVLVPYAADGSCFHPGLASTRDGSFRVGEKSAQK 112 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y G R+K R G+SQ F G S +S E+G + + + + Sbjct: 7 YLFGQRVKEFRIAIGLSQEAFADRCGFARSYMSRIERGCSNASLDAIEVLADALRIEPWQ 66 Query: 172 IYFGD 176 + D Sbjct: 67 LLASD 71 >gi|332970254|gb|EGK09246.1| LexA family repressor/S24 family protease [Kingella kingae ATCC 23330] Length = 206 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R +Q + A +S + ENG +S + L + + + +++ DG Sbjct: 5 ERVKNRRLELGLSQAALGKLAGVPQSTIGQIENGRNKSSTKIL-ELAHALQTTVEYLVDG 63 Query: 94 EVIDRRYEDVTNKKRL 109 ++ + N + Sbjct: 64 VEPAQKQPSLPNVSEM 79 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K+ R + G+SQ GKL G+P ST+ E GR K + + +++ Sbjct: 1 MSFNERVKNRRLELGLSQAALGKLAGVPQSTIGQIENGRNKSSTKILE-LAHALQTTVEY 59 Query: 172 IYFGDEVIVPKS 183 + G E + Sbjct: 60 LVDGVEPAQKQP 71 >gi|331086036|ref|ZP_08335119.1| hypothetical protein HMPREF0987_01422 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406959|gb|EGG86464.1| hypothetical protein HMPREF0987_01422 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 72 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G I RK N +Q+E+A + + A++ +E G+ I + L +S + Sbjct: 7 GCFIARKRKERNMSQRELAEYLHITDKAISKWERGLSFPDITILIPLSEILGVSLYDLLT 66 Query: 93 G 93 G Sbjct: 67 G 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G + RK++ MSQ E + L + + +S +E+G + P+I + ++ Sbjct: 1 MDAMKTGCFIARKRKERNMSQRELAEYLHITDKAISKWERGLSFPDITILIPLSEILGVS 60 Query: 169 LDWIYFG 175 L + G Sbjct: 61 LYDLLTG 67 >gi|226366458|ref|YP_002784241.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226244948|dbj|BAH55296.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 184 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ R+ + + E+A A +S ++ E+G + S+ L ++ + Sbjct: 10 IGPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVPMSQLL 69 Query: 92 DGEVIDRRYEDVTNKKRL 109 D + L Sbjct: 70 DPPRPRVQVIRADEGPEL 87 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ R+ GMS E + G+ STLS E G P ++ + + + D Sbjct: 14 LRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVPMSQLL--DP 71 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSS 203 + RA + D +++ Sbjct: 72 PRPRVQVIRADEGPELTSDRADYRAT 97 >gi|226303576|ref|YP_002763534.1| TetR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226182691|dbj|BAH30795.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 308 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 47/161 (29%), Gaps = 27/161 (16%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R+ + + +E+A + + ++ E G S+ + + FD + Sbjct: 26 IGASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGVRFDALL 85 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK--------------------DKGMSQIE 131 ++ + DP A + R G + E Sbjct: 86 PAAIVRPPEQPRWGGDDADPDAHFRPNEWRRFGPSSFDPVLAAALAEMVKTGYHGAAMRE 145 Query: 132 FGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 K M L ++ + + ++ + + Sbjct: 146 IAKRAQMSVPGLYHHYSSKQQM-------LAEILDLTMAEL 179 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A ++ R+ G+S E + L + +TLS E G+T + I + D + Sbjct: 28 ASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGVRFDALL 85 >gi|225175042|ref|ZP_03729039.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225169682|gb|EEG78479.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 65 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R ++Q E K LG+ +T+++ E+GR P IK A K+ + +++ ++ Sbjct: 1 MENKLKVYRAMHDLTQEELAKKLGVTRATVNSIEKGRYDPSIKLAFKMARFFAVNVEELF 60 Query: 174 FGDE 177 DE Sbjct: 61 IYDE 64 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R ++ TQ+E+A + VN E G SI+ A + + ++ + ++ Sbjct: 3 NKLKVYRAMHDLTQEELAKKLGVTRATVNSIEKGRYDPSIKLAFKMARFFAVNVEELFIY 62 Query: 94 EVI 96 + Sbjct: 63 DEK 65 >gi|323174632|gb|EFZ60253.1| helix-turn-helix family protein [Escherichia coli LT-68] Length = 109 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 1/106 (0%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++ R+A T E+A + E + +E+G +I + L N Sbjct: 3 LQNKNSAINNRLRTQREACGLTTAELARLLDLDEEVIIQWESGEYEPTISMLIPLANILG 62 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQ 129 W+ G V ++ + L + K Q Sbjct: 63 CDPMWLLTGAVTPPVQPKSEEQQHHNASQQVCSLSREALLRKNQYQ 108 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI RL++ R+ G++ E +LL + + +E G P I + + W+ Sbjct: 9 AINNRLRTQREACGLTTAELARLLDLDEEVIIQWESGEYEPTISMLIPLANILGCDPMWL 68 Query: 173 YFG--DEVIVPKSIKRAKGNQSSK 194 G + PKS ++ N S + Sbjct: 69 LTGAVTPPVQPKSEEQQHHNASQQ 92 >gi|23664437|gb|AAN39374.1| regulator [Azoarcus evansii] Length = 300 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 M L P E + LQ I +G R+++IR T+K +A A E Sbjct: 1 MSLEPTTEQQQEELQTADQAAEGNI---LPTLGKRVREIRDRRGMTRKLVAREAGVSERH 57 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 + E G + SI + +S + E D + Sbjct: 58 LAHLEGGDGNVSIVLLHNIARALNVSLIELLAPETEDTVEKR 99 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ IR +GM++ + G+ L++ E G I I + L + Sbjct: 31 KRVREIRDRRGMTRKLVAREAGVSERHLAHLEGGDGNVSIVLLHNIARALNVSLIELLAP 90 Query: 176 --DEVIVPKSIKR 186 ++ + + I+R Sbjct: 91 ETEDTVEKRLIRR 103 >gi|313898840|ref|ZP_07832374.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956422|gb|EFR38056.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 150 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 34/87 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + RK + +Q+E+A ++ +E I + + Y IS D + Sbjct: 2 NLGNSLFHARKKSGLSQEEVAEKIGVSRQTISKWETNETVPDIYQSKKMAKLYRISLDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + ++ + E++ +K Sbjct: 62 IEFDIDLQEIEEMIDKSDEKLNEKVNW 88 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G L RK G+SQ E + +G+ T+S +E T+P+I ++K+ ++ + LD Sbjct: 1 MNLGNSLFHARKKSGLSQEEVAEKIGVSRQTISKWETNETVPDIYQSKKMAKLYRISLDE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + D + K ++ + Sbjct: 61 LIEFDIDLQEIEEMIDKSDEKLNEK 85 >gi|332652846|ref|ZP_08418591.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517992|gb|EGJ47595.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 149 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 35/86 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+ + RK + +Q+ +A ++ +E IR + L Y ++ D + Sbjct: 3 LGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYHMTLDELI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 + + +++ + + + + A Sbjct: 63 EYDFDEQQAQQMIDSVSDEAQARIDW 88 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G+ L RK G+SQ + LG+ T+S +E T+P+I+ ++ + + LD Sbjct: 1 MSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYHMTLDE 60 Query: 172 IYFGD 176 + D Sbjct: 61 LIEYD 65 >gi|269793680|ref|YP_003313135.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269095865|gb|ACZ20301.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 190 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 2/99 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R A T +A S ++ E G ++ + + + D + + Sbjct: 12 QRIRGLRLARGWTLDALASRCFLSASTLSRIETGHRRIALDQLVPIAQALGTTLDQLVEP 71 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 E + + P L R +G++ + Sbjct: 72 EDDEDVVIRPEPETM--PGLSVWLLSRERDRRGVTIAKM 108 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ +R +G + + STLS E G + I Q LD + Sbjct: 11 RQRIRGLRLARGWTLDALASRCFLSASTLSRIETGHRRIALDQLVPIAQALGTTLDQLVE 70 Query: 175 GDEV 178 ++ Sbjct: 71 PEDD 74 >gi|257869747|ref|ZP_05649400.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803911|gb|EEV32733.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 211 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 25 IRQYWKDV---GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + Y K + G I+ IRK Q+E+A +++ E G+ + + + Sbjct: 1 MEHYEKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMD 60 Query: 82 EYEISFDWIYDGE 94 ++ + + GE Sbjct: 61 VLGVTPNELLSGE 73 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++IRK +GM Q E +G+ +LS E+G P KI V + + G Sbjct: 13 ENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNELLSG 72 Query: 176 D 176 + Sbjct: 73 E 73 >gi|191639822|ref|YP_001988988.1| Prophage Lp3 protein 2 [Lactobacillus casei BL23] gi|190714124|emb|CAQ68130.1| Prophage Lp3 protein 2 [Lactobacillus casei BL23] gi|327383933|gb|AEA55409.1| Transcriptional regulator, XRE family [Lactobacillus casei LC2W] gi|327387114|gb|AEA58588.1| Transcriptional regulator, XRE family [Lactobacillus casei BD-II] Length = 212 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 7/105 (6%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R+A + +Q ++A ++ +E G+ + L + +S ++ Sbjct: 4 NRIKAAREAAHLSQGDLAAQLKVTRQTISAYERGLREPRMDVWKSLSDALSVSIPYL--- 60 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIR--KDKGMSQIEFGKLL 136 + + + + LK I G E + + Sbjct: 61 --QGISSDPIAIDETIAHTMTNRELKEIIDDYKHGNKTPEDAEKV 103 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+K+ R+ +SQ + L + T+S YE+G P + + + + ++ Sbjct: 1 MTNNRIKAAREAAHLSQGDLAAQLKVTRQTISAYERGLREPRMDVWKSLSDALSVSIPYL 60 Query: 173 --YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 D + + ++I N+ K+ D K N Sbjct: 61 QGISSDPIAIDETIAHTMTNRELKEIIDDYKHGN 94 >gi|126649830|ref|ZP_01722066.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] gi|126593549|gb|EAZ87494.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] Length = 180 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 30/79 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK +R TQ+E+ + + ++ E + S SI + + Sbjct: 2 QIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKEF 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 +D +++ + + Sbjct: 62 FDDGTPEQKVVYTEEDQSI 80 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA++K++R KG++Q E G+ + +S E+ P I+ I +V Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + P+ S + ++KK Sbjct: 61 FF---DDGTPEQKVVYTEEDQSIFTDEEKK 87 >gi|30018346|ref|NP_829977.1| XRE family transcriptional regulator [Bacillus cereus ATCC 14579] gi|218235456|ref|YP_002364925.1| DNA-binding protein [Bacillus cereus B4264] gi|228919025|ref|ZP_04082405.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228956516|ref|ZP_04118313.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|229107761|ref|ZP_04237398.1| Transcriptional regulator Xre [Bacillus cereus Rock1-15] gi|229125592|ref|ZP_04254625.1| Transcriptional regulator Xre [Bacillus cereus BDRD-Cer4] gi|229142881|ref|ZP_04271323.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST24] gi|229148484|ref|ZP_04276741.1| Transcriptional regulator Xre [Bacillus cereus m1550] gi|296500908|ref|YP_003662608.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] gi|29893886|gb|AAP07178.1| Transcriptional regulator, Xre family [Bacillus cereus ATCC 14579] gi|218163413|gb|ACK63405.1| DNA-binding protein [Bacillus cereus B4264] gi|228635026|gb|EEK91598.1| Transcriptional regulator Xre [Bacillus cereus m1550] gi|228640593|gb|EEK96981.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST24] gi|228657909|gb|EEL13714.1| Transcriptional regulator Xre [Bacillus cereus BDRD-Cer4] gi|228675734|gb|EEL30941.1| Transcriptional regulator Xre [Bacillus cereus Rock1-15] gi|228803206|gb|EEM50027.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|228840674|gb|EEM85935.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321960|gb|ADH04888.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 67 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S S + + + +S + + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIEELMP 66 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ RK KG +Q F K LG+ S L E+G P ++ + ++ + Sbjct: 8 RRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIEELM 65 >gi|134299415|ref|YP_001112911.1| cupin 2 domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052115|gb|ABO50086.1| Cupin 2, conserved barrel domain protein [Desulfotomaculum reducens MI-1] Length = 180 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/103 (10%), Positives = 34/103 (33%), Gaps = 1/103 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++ +++ +R N T K+++ S ++ E G S +I + + + Sbjct: 1 MEEIFEKVRTLRNQKNMTLKDLSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNVHIA 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPY-AIGARLKSIRKDKGMSQI 130 + +K + ++ + G + Sbjct: 61 SFFANYSNTNFTTRADEQKSFKIEGSSTEYIRLSGEFHGRNLE 103 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +++++R K M+ + + G+ S LS E+G + I +KI H+ Sbjct: 1 MEEIFEKVRTLRNQKNMTLKDLSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNVHIA 60 Query: 171 WIY 173 + Sbjct: 61 SFF 63 >gi|167036905|ref|YP_001664483.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039610|ref|YP_001662595.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X514] gi|256751511|ref|ZP_05492388.1| transcriptional regulator, XRE family [Thermoanaerobacter ethanolicus CCSD1] gi|300915140|ref|ZP_07132455.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307267180|ref|ZP_07548687.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|307725064|ref|YP_003904815.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X513] gi|320115324|ref|YP_004185483.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853850|gb|ABY92259.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X514] gi|166855739|gb|ABY94147.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749595|gb|EEU62622.1| transcriptional regulator, XRE family [Thermoanaerobacter ethanolicus CCSD1] gi|300888864|gb|EFK84011.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|306917796|gb|EFN48063.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|307582125|gb|ADN55524.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513] gi|319928415|gb|ADV79100.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 132 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK RK NN T ++ ++ EN S + L+N +S DW+ Sbjct: 4 VGERIKYARKKNNLTITALSKLTGLSVGNLSDLENNKSMPSSNALIKLKNALNVSIDWLL 63 Query: 92 DGEV 95 G+ Sbjct: 64 TGQQ 67 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K RK ++ KL G+ LS+ E +++P K+K +DW+ G Sbjct: 6 ERIKYARKKNNLTITALSKLTGLSVGNLSDLENNKSMPSSNALIKLKNALNVSIDWLLTG 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ K + ++ +S +K Sbjct: 66 QQIEYVKEEEEKYLSREEFESISEK 90 >gi|311107907|ref|YP_003980760.1| hypothetical protein AXYL_04732 [Achromobacter xylosoxidans A8] gi|310762596|gb|ADP18045.1| helix-turn-helix family protein 10 [Achromobacter xylosoxidans A8] Length = 184 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D+ R++ +R+ + +++A +S ++ E G+ SI L L Y + Sbjct: 1 MIDLPHRLRALRRQQTLSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGLGVS 60 Query: 89 WIYDGEVIDRRY 100 + + + Sbjct: 61 ELVGTDDAAQEE 72 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL+++R+ + +S + + G+ S LS E+G + P I ++ + + Sbjct: 1 MIDLPHRLRALRRQQTLSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGLGVS 60 Query: 171 WIYFGDEVIVPKSIKRAK 188 + D+ + + + Sbjct: 61 ELVGTDDAAQEEVVSVVR 78 >gi|296453372|ref|YP_003660515.1| XRE family transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182803|gb|ADG99684.1| transcriptional regulator, XRE family [Bifidobacterium longum subsp. longum JDM301] Length = 92 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM------CSTSIRY 75 + E +Y K++G ++ +R TQ+ +A A E G + +++ Sbjct: 7 SKEWARYAKELGVNLQRLRVERGLTQERVAYDAGLSRYQYQRMEWGRIGKDTPANPTLKT 66 Query: 76 ALYLRNEYEISFDWIYDGEVIDRR 99 + + ++ D + D Sbjct: 67 IMAVAQVLGVTLDELLPQPWPDLH 90 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR------TIPEIKPARKIKQVTKKHLD 170 L+ +R ++G++Q G+ E GR P +K + QV LD Sbjct: 20 NLQRLRVERGLTQERVAYDAGLSRYQYQRMEWGRIGKDTPANPTLKTIMAVAQVLGVTLD 79 Query: 171 WIY 173 + Sbjct: 80 ELL 82 >gi|226361968|ref|YP_002779746.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240453|dbj|BAH50801.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 221 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 TP K + +++ +RKA+ + +MA ++ ++ EN S S+ L Sbjct: 27 TPTGPDLEKVIARQVRALRKASGLSVGDMAAKVGISKAMLSKIENSQTSCSLSTLARLAA 86 Query: 82 EYEISFDWIYDGEVIDRRYEDVT 104 ++ ++ G R V Sbjct: 87 GLDVPVTSLFRGADTARDAVYVE 109 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 30/75 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I +++++RK G+S + +G+ + LS E +T + ++ + + Sbjct: 36 VIARQVRALRKASGLSVGDMAAKVGISKAMLSKIENSQTSCSLSTLARLAAGLDVPVTSL 95 Query: 173 YFGDEVIVPKSIKRA 187 + G + A Sbjct: 96 FRGADTARDAVYVEA 110 >gi|221200648|ref|ZP_03573689.1| DNA-binding protein [Burkholderia multivorans CGD2M] gi|221208477|ref|ZP_03581479.1| DNA-binding protein [Burkholderia multivorans CGD2] gi|221210397|ref|ZP_03583377.1| DNA-binding protein [Burkholderia multivorans CGD1] gi|221169353|gb|EEE01820.1| DNA-binding protein [Burkholderia multivorans CGD1] gi|221171665|gb|EEE04110.1| DNA-binding protein [Burkholderia multivorans CGD2] gi|221179220|gb|EEE11626.1| DNA-binding protein [Burkholderia multivorans CGD2M] Length = 201 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 3/100 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E A A + ++ E G+ S S+ + ++ + Sbjct: 25 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYFV 84 Query: 92 D---GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D E R E + D + ARL ++ + + + Sbjct: 85 DTPSEERSVCRGEQLRFFGFADSANLFARLTNLSEGRQLE 124 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 ++ + A+G++++++R+ + E G+ LS E+G P + Sbjct: 7 PAMVPPTENSRSAVAAAALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSL 66 Query: 156 KPARKIKQVTKKHLDWIY 173 I Q + + Sbjct: 67 TSLAGIAQALGVTVQYFV 84 >gi|210634335|ref|ZP_03298071.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] gi|210158862|gb|EEA89833.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] Length = 152 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +R TQ+E+A AV+ +E G I + E ++ Sbjct: 10 QLRHERGLTQEELASRLYITRQAVSRWETGATEPGIDMIKLIARELDVPV 59 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +R ++G++Q E L + +S +E G T P I + I + + + Sbjct: 8 LVQLRHERGLTQEELASRLYITRQAVSRWETGATEPGIDMIKLIARELDVPVMRLL 63 >gi|195939798|ref|ZP_03085180.1| putative repressor protein [Escherichia coli O157:H7 str. EC4024] gi|261226405|ref|ZP_05940686.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257983|ref|ZP_05950516.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK966] Length = 214 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G R+K +RK TQ E+ + + +E + + L + Sbjct: 1 MESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTES 60 Query: 89 WIYDG 93 ++ G Sbjct: 61 YLLYG 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 37/79 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RKDKG++Q+E GKL G+ T+ +E+ P K K+ Q ++ +G Sbjct: 8 LKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLLYGVS 67 Query: 178 VIVPKSIKRAKGNQSSKKS 196 ++ G + S Sbjct: 68 SPELSFVQSTSGTKIPYLS 86 >gi|166032286|ref|ZP_02235115.1| hypothetical protein DORFOR_01989 [Dorea formicigenerans ATCC 27755] gi|166028009|gb|EDR46766.1| hypothetical protein DORFOR_01989 [Dorea formicigenerans ATCC 27755] Length = 214 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 35/85 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + ++ +IK R + +Q+E+A ++ +EN I L L + + +S D Sbjct: 19 YMELSIQIKKYRTELHLSQEELAEKVYVTRQTISNWENEKSYPDIHSLLLLSSLFNVSLD 78 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYA 113 + G++ + + + Y Sbjct: 79 QLIKGDIEKMKEIISEQEIKKFNYY 103 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 37/82 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + + ++K R + +SQ E + + + T+SN+E ++ P+I + + L Sbjct: 18 NYMELSIQIKKYRTELHLSQEELAEKVYVTRQTISNWENEKSYPDIHSLLLLSSLFNVSL 77 Query: 170 DWIYFGDEVIVPKSIKRAKGNQ 191 D + GD + + I + + Sbjct: 78 DQLIKGDIEKMKEIISEQEIKK 99 >gi|161519811|ref|YP_001583238.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343861|gb|ABX16946.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 193 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 3/100 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E A A + ++ E G+ S S+ + ++ + Sbjct: 17 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYFV 76 Query: 92 D---GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D E R E + D + ARL ++ + + + Sbjct: 77 DTPSEERSVCRGEQLRFFGFADSANLFARLTNLSEGRQLE 116 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 29/76 (38%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 ++ + A+G++++++R+ + E G+ LS E+G P + Sbjct: 1 MVPPTENSRSAVAAAALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTS 60 Query: 158 ARKIKQVTKKHLDWIY 173 I Q + + Sbjct: 61 LAGIAQALGVTVQYFV 76 >gi|110802551|ref|YP_699244.1| DNA-binding protein [Clostridium perfringens SM101] gi|110683052|gb|ABG86422.1| DNA-binding protein [Clostridium perfringens SM101] Length = 179 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ +R A TQ+E+A + ++ EN + S SI + + + + Sbjct: 2 EIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ + + + L + Sbjct: 62 FSEDTNEKIAFSKDDMFETENEELKYNLMWL 92 Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 31/88 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R K ++Q E + +S E T P I I + +L Sbjct: 1 MEIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + D K +++ K + Sbjct: 61 FFSEDTNEKIAFSKDDMFETENEELKYN 88 >gi|86158292|ref|YP_465077.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774803|gb|ABC81640.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 81 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+ + +G R+++ R+ TQ+ +A + + V+L E G + + + Sbjct: 12 RREELRRLGERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARALG 71 Query: 85 IS 86 I Sbjct: 72 IP 73 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R+ +GM+Q + L + + +S E+G P I + I Sbjct: 21 ERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARALGIPATRIVAE 80 Query: 176 D 176 D Sbjct: 81 D 81 >gi|328463792|gb|EGF35345.1| hypothetical protein AAULH_12086 [Lactobacillus helveticus MTCC 5463] Length = 140 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY-D 92 RIK++R+ N +Q E+A + A++ +E+G L + + +S D++ Sbjct: 2 NRIKELRQENKFSQIELANKVHASNQAISAYESGTREPKEPMWQALADFFNVSVDYLKGY 61 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGA 116 G D Y+ + + + D Sbjct: 62 GYSKDYIYKQLDDAYKKDYLLTFE 85 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+K +R++ SQIE + N +S YE G P+ + + +D++ Sbjct: 1 MNRIKELRQENKFSQIELANKVHASNQAISAYESGTREPKEPMWQALADFFNVSVDYL 58 >gi|255656468|ref|ZP_05401877.1| transcriptional regulator, XRE family protein [Clostridium difficile QCD-23m63] Length = 65 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +RK Q++ A ++ ENG + S+ A + + +E+S + I+ + Sbjct: 8 LRKKKGLNQEDFAKILKVSRQTISSIENGKYNPSLELAFQISDFFEMSIEEIFLWKE 64 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 38/65 (58%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++++RK KG++Q +F K+L + T+S+ E G+ P ++ A +I + ++ I+ Sbjct: 1 MKNCVEALRKKKGLNQEDFAKILKVSRQTISSIENGKYNPSLELAFQISDFFEMSIEEIF 60 Query: 174 FGDEV 178 E+ Sbjct: 61 LWKEI 65 >gi|168178698|ref|ZP_02613362.1| transcriptional regulator [Clostridium botulinum NCTC 2916] gi|182671003|gb|EDT82977.1| transcriptional regulator [Clostridium botulinum NCTC 2916] Length = 170 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 31/82 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ ++KD+R N + ++A +S ++ ENG + + ++ D Sbjct: 2 EISEKLKDLRTFKNLSTYDLAEKTGIPQSTISKLENGNRKIDTDILQKIADAMDVPIDIF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPY 112 + + ++L + Sbjct: 62 FQKQSPSEILGKKVTYEKLKEW 83 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 4/93 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +LK +R K +S + + G+P ST+S E G + +KI +D Sbjct: 1 MEISEKLKDLRTFKNLSTYDLAEKTGIPQSTISKLENGNRKIDTDILQKIADAMDVPIDI 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + P I K K + D K +N Sbjct: 61 FF---QKQSPSEI-LGKKVTYEKLKEWDDKYTN 89 >gi|149187671|ref|ZP_01865968.1| transcriptional regulator, XRE family with cupin sensor protein [Vibrio shilonii AK1] gi|148838551|gb|EDL55491.1| transcriptional regulator, XRE family with cupin sensor protein [Vibrio shilonii AK1] Length = 182 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 12/107 (11%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL--------RNE 82 ++G R K +R+ +Q+E+A A ++ E+ S S+ L Sbjct: 4 EIGPRFKALRERAGLSQRELAKRAGVTNGFISQIESNAVSPSVASLSKLLSKIPSSMAEF 63 Query: 83 YEIS---FDWIYDGE-VIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + D + + + +++ Y ++ +R+ Sbjct: 64 FAVDEPKPDQFFSRKQQQPEIGRGKISYRQIGHYHDDRQIGMLRETL 110 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K++R+ G+SQ E K G+ N +S E P + K+ + + DE Sbjct: 10 KALRERAGLSQRELAKRAGVTNGFISQIESNAVSPSVASLSKLLSKIPSSMAEFFAVDEP 69 Query: 179 IVPKSIKRAKGNQSSKKSKKDKK 201 + R + + K + Sbjct: 70 KPDQFFSRKQQQPEIGRGKISYR 92 >gi|229541963|ref|ZP_04431023.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326383|gb|EEN92058.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 71 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K +RK+ G++Q + K L + T+ E R P ++ A KI + K+++ I Sbjct: 1 MVKNNIKLLRKEIGITQEQLAKELKITRQTVITIENHRYNPSLELALKIAKFFGKNVEEI 60 Query: 173 YFGDE 177 +F +E Sbjct: 61 FFLEE 65 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RK TQ+++A V EN + S+ AL + + + + I+ Sbjct: 4 NNIKLLRKEIGITQEQLAKELKITRQTVITIENHRYNPSLELALKIAKFFGKNVEEIFFL 63 Query: 94 EV 95 E Sbjct: 64 EE 65 >gi|30021440|ref|NP_833071.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|206969324|ref|ZP_03230279.1| DNA-binding protein [Bacillus cereus AH1134] gi|218232223|ref|YP_002368049.1| DNA-binding protein [Bacillus cereus B4264] gi|29896994|gb|AAP10272.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|206736365|gb|EDZ53523.1| DNA-binding protein [Bacillus cereus AH1134] gi|218160180|gb|ACK60172.1| DNA-binding protein [Bacillus cereus B4264] Length = 66 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK+ R N TQ+++A ++ E G + S++ A + + D I+ E Sbjct: 6 RIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDEIFIFE 65 Query: 95 V 95 Sbjct: 66 D 66 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A R+K R M+Q + K +G+ T+S+ E+G+ P ++ A I + +D Sbjct: 1 MAFVTRIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDE 60 Query: 172 IYFGDE 177 I+ ++ Sbjct: 61 IFIFED 66 >gi|15832020|ref|NP_310793.1| repressor protein [Escherichia coli O157:H7 str. Sakai] gi|254793674|ref|YP_003078511.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. TW14359] gi|13362234|dbj|BAB36189.1| putative repressor protein [Escherichia coli O157:H7 str. Sakai] gi|254593074|gb|ACT72435.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. TW14359] Length = 215 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G R+K +RK TQ E+ + + +E + + L + Sbjct: 2 MESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTES 61 Query: 89 WIYDG 93 ++ G Sbjct: 62 YLLYG 66 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 37/79 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RKDKG++Q+E GKL G+ T+ +E+ P K K+ Q ++ +G Sbjct: 9 LKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLLYGVS 68 Query: 178 VIVPKSIKRAKGNQSSKKS 196 ++ G + S Sbjct: 69 SPELSFVQSTSGTKIPYLS 87 >gi|329888646|ref|ZP_08267244.1| hypothetical protein BDIM_05720 [Brevundimonas diminuta ATCC 11568] gi|328847202|gb|EGF96764.1| hypothetical protein BDIM_05720 [Brevundimonas diminuta ATCC 11568] Length = 163 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 20/152 (13%) Query: 41 KANNKTQKEMAIGANQLESAVNLFE---NGMCSTSIRYAL--YLRNEYEISFDWIYDGEV 95 KA+ Q +A + + + + G + S+ + +++S + I+ E+ Sbjct: 2 KASGLNQSRVASASGVSYNTIRSYVGDGTGKQTASLTGVNEAKIARAFDLSVEDIFGSEL 61 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 + L + RK + M+ E +G+P +T+ E P Sbjct: 62 EEPE---------------RNHLAAWRKFRFMTIDELADKIGVPPATIELLETTPRPPSD 106 Query: 156 KPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 K R++ + +I D V + A Sbjct: 107 KWLRRLAVPLETTAGFILDFDPTDVDTAALEA 138 Score = 41.9 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 3/80 (3%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I E+ + ++ + RK T E+A + + L E S ++ L Sbjct: 56 IFGSELEEPERN---HLAAWRKFRFMTIDELADKIGVPPATIELLETTPRPPSDKWLRRL 112 Query: 80 RNEYEISFDWIYDGEVIDRR 99 E + +I D + D Sbjct: 113 AVPLETTAGFILDFDPTDVD 132 >gi|308068399|ref|YP_003870004.1| transcriptional regulator y4dJ [Paenibacillus polymyxa E681] gi|305857678|gb|ADM69466.1| Putative HTH-type transcriptional regulator y4dJ [Paenibacillus polymyxa E681] Length = 112 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 32/79 (40%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E ++ K VG RI+ +RK +Q+ + S + E G + S+ + N Sbjct: 2 EDKEVLKLVGARIRALRKEKGLSQESLGEKGGFHFSYIGQIERGEKNVSLINIAKIANAL 61 Query: 84 EISFDWIYDGEVIDRRYED 102 +++ ++ D + Sbjct: 62 DVNLIQLFAYVNEDIKVTK 80 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++++RK+KG+SQ G+ G S + E+G + KI +L ++ Sbjct: 12 ARIRALRKEKGLSQESLGEKGGFHFSYIGQIERGEKNVSLINIAKIANALDVNLIQLF-- 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 V + IK K + ++ + S+P Sbjct: 70 --AYVNEDIKVTKHEEGIQEIVNILQKSSP 97 >gi|229088202|ref|ZP_04220142.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] gi|228695098|gb|EEL48134.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] Length = 181 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK T K++A N S ++ E S ++ + ++ + + Sbjct: 5 IGVKIKRLRKERKLTLKQIADQTNLSISFLSQVERSKSSITLESLKKISEALGVNPSYFF 64 Query: 92 DGEVIDRRYEDVTNKKR 108 + N Sbjct: 65 SEPEKQTTPTVMRNIIN 81 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 35/76 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK++ ++ + + S LS E+ ++ ++ +KI + + + + E Sbjct: 9 IKRLRKERKLTLKQIADQTNLSISFLSQVERSKSSITLESLKKISEALGVNPSYFFSEPE 68 Query: 178 VIVPKSIKRAKGNQSS 193 ++ R N+++ Sbjct: 69 KQTTPTVMRNIINKTN 84 >gi|189462915|ref|ZP_03011700.1| hypothetical protein BACCOP_03616 [Bacteroides coprocola DSM 17136] gi|189430531|gb|EDU99515.1| hypothetical protein BACCOP_03616 [Bacteroides coprocola DSM 17136] Length = 185 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K + R+K +R A + + +E+A N E+G C S+ + +Y Sbjct: 1 MDEQIKQIAERLKGLRDALDLSVEEVAADCNFTVEEYQAIESGECDFSVSVLQRIARKYG 60 Query: 85 ISFDWIYDGEVIDRRYE 101 I+ D + GE + Sbjct: 61 ITLDELMFGEEPKMKSY 77 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 29/86 (33%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R +S E E G + ++I + LD + FG Sbjct: 10 ERLKGLRDALDLSVEEVAADCNFTVEEYQAIESGECDFSVSVLQRIARKYGITLDELMFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + +G S + K K Sbjct: 70 EEPKMKSYFLTRRGTGVSVERTKAYK 95 >gi|157149688|ref|YP_001449888.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157074482|gb|ABV09165.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 71 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALF 59 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALFW 60 Query: 175 GDEVIVPKS 183 ++ S Sbjct: 61 DPQLTDEDS 69 >gi|307126198|ref|YP_003878229.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|306483260|gb|ADM90129.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|321157139|emb|CBW39125.1| Putative phage repressor protein [Streptococcus phage 23782] gi|321157188|emb|CBW39173.1| Putative phage repressor protein [Streptococcus phage 11865] Length = 244 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 1/99 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 +VG RIK RKA + E+A S + +E G + ++ +S Sbjct: 2 NVGERIKQRRKALKMSADELAESVGVSRSTIFRYEKGDIEKVGPEVLKKIADKLNVSPGD 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + E + + T+ +L + RK K ++ Sbjct: 62 LMGWEDNQQELKIPTSPLVHKITEKVVKLSTPRKQKVLN 100 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLD 170 +G R+K RK MS E + +G+ ST+ YE+G + +KI Sbjct: 1 MNVGERIKQRRKALKMSADELAESVGVSRSTIFRYEKGDIEKVGPEVLKKIADKLNVSPG 60 Query: 171 WIYFGDEVIVPKSI 184 + ++ I Sbjct: 61 DLMGWEDNQQELKI 74 >gi|298292822|ref|YP_003694761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929333|gb|ADH90142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 72 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 K VG +R+A + TQ+++A + + ++ E G + +I L ++S Sbjct: 4 RKLVGRNFARLRQAKDLTQEQVAERSGLSQQYLSGLERGRRNPTIITLYELARALDVS 61 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +R+ K ++Q + + G+ LS E+GR P I ++ + Sbjct: 13 RLRQAKDLTQEQVAERSGLSQQYLSGLERGRRNPTIITLYELARALDVS 61 >gi|295093412|emb|CBK82503.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 69 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ R Q+EM + ++ E G S S+ AL + +S + I+ Sbjct: 5 NKLKEYRAKLGVNQQEMGVLVQTSRQTISQIERGDYSPSVTLALKIAKVCGVSVEDIFQY 64 Query: 94 EVIDR 98 E Sbjct: 65 EDDKE 69 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +LK R G++Q E G L+ T+S E+G P + A KI +V ++ Sbjct: 1 MPLYNKLKEYRAKLGVNQQEMGVLVQTSRQTISQIERGDYSPSVTLALKIAKVCGVSVED 60 Query: 172 IYFGDEV 178 I+ ++ Sbjct: 61 IFQYEDD 67 >gi|326204530|ref|ZP_08194387.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985323|gb|EGD46162.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 111 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 36/109 (33%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + K +G RI+ R+ T+++ A V E G + S++ + + + Sbjct: 2 EKKLDLKGIGLRIRSEREKIGLTREQFAEQVGISPLYVGQIERGQRAMSLKTFVKIADSL 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + D++ G D L LK + + Sbjct: 62 HANTDFLIYGIEERASGTDKDGVLNLLEKCSVRELKLAEEMLKLLLTYI 110 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 47/96 (48%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +K+LD IG R++S R+ G+++ +F + +G+ + E+G+ +K KI Sbjct: 2 EKKLDLKGIGLRIRSEREKIGLTREQFAEQVGISPLYVGQIERGQRAMSLKTFVKIADSL 61 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + D++ +G E + K N K S ++ K Sbjct: 62 HANTDFLIYGIEERASGTDKDGVLNLLEKCSVRELK 97 >gi|255531981|ref|YP_003092353.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344965|gb|ACU04291.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 327 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +I + RK N +Q ++A AV +E G I L + ++ Sbjct: 5 KMIGNKITEARKKINISQVQLAQRLFISPQAVGKWERGESMPDIITFNRLSEILGVDLNY 64 Query: 90 I 90 Sbjct: 65 F 65 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 33/65 (50%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ IG ++ RK +SQ++ + L + + +E+G ++P+I ++ ++ Sbjct: 1 MLNTKMIGNKITEARKKINISQVQLAQRLFISPQAVGKWERGESMPDIITFNRLSEILGV 60 Query: 168 HLDWI 172 L++ Sbjct: 61 DLNYF 65 >gi|116328012|ref|YP_797732.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331382|ref|YP_801100.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120756|gb|ABJ78799.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125071|gb|ABJ76342.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 141 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 7/140 (5%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I +RK Q +MA S ++ E G + ++ + + + +++ Sbjct: 3 NHIYMLRKKRGIKQYDMARALGVSPSYLSKIETGSQDPTEKFKQSCVKYLKTTLERLFNE 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + ++ Y + T +A R++ G+ Q + K L + LS E G P Sbjct: 63 QPVEDVYPEFTEGLTNRLWAK-------RRELGIKQYDMAKKLKVSTPFLSKVELGLLEP 115 Query: 154 EIKPARKIKQVTKKHLDWIY 173 + K + ++ Sbjct: 116 PEDFKNMASKALKMKKEELF 135 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + +RK +G+ Q + + LG+ S LS E G P K + + K L+ ++ Sbjct: 1 MKNHIYMLRKKRGIKQYDMARALGVSPSYLSKIETGSQDPTEKFKQSCVKYLKTTLERLF 60 Query: 174 FGD--EVIVPKSIKRAKGNQSSKKSKKDKK 201 E + P+ + +K+ + K Sbjct: 61 NEQPVEDVYPEFTEGLTNRLWAKRRELGIK 90 Score = 36.9 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 8/70 (11%), Positives = 25/70 (35%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ + + R+ R+ Q +MA ++ E G+ + ++ Sbjct: 71 EFTEGLTNRLWAKRRELGIKQYDMAKKLKVSTPFLSKVELGLLEPPEDFKNMASKALKMK 130 Query: 87 FDWIYDGEVI 96 + ++ +V Sbjct: 131 KEELFLQKVE 140 >gi|56962032|ref|YP_173754.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56908266|dbj|BAD62793.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 145 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +RK + +Q+++A N V +E+ I L + ++++ D + Sbjct: 2 IGINIRVLRKKHKLSQEQLAEKVNVSRQTVAKWESEEAFPDIFKCKMLSDIFQVTIDQLS 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI-----GARL-KSIRKDKGMSQIEFGKLL 136 + + K+ + K R+ M QI G L Sbjct: 62 RDMSEEEANQLRPKGKQFFGVVKVGERGQMVIPKQARE---MYQIHAGDKL 109 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ +RK +SQ + + + + T++ +E P+I + + + + +D + D Sbjct: 5 NIRVLRKKHKLSQEQLAEKVNVSRQTVAKWESEEAFPDIFKCKMLSDIFQVTIDQL-SRD 63 Query: 177 EVIVPKSIKRAKGNQ 191 + R KG Q Sbjct: 64 MSEEEANQLRPKGKQ 78 >gi|298252935|ref|ZP_06976729.1| hypothetical protein GV51_1311 [Gardnerella vaginalis 5-1] gi|297533299|gb|EFH72183.1| hypothetical protein GV51_1311 [Gardnerella vaginalis 5-1] Length = 158 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 +N E + + +++ + Q +D+ + RK TQ E++ +S ++ Sbjct: 65 MNDLHELTDELMKDPEFKKEYDALQPERDLTMSLVMARKRAGLTQAELSEKTGISQSDIS 124 Query: 63 LFENGMCSTSIRYALYLRNEYE 84 ENG + +I + N Sbjct: 125 RLENGSRNPTIALLNRIANALN 146 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 5/80 (6%) Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 D + + Y+ + ++ L L RK G++Q E + G+ S +S Sbjct: 72 TDELMKDPEFKKEYDALQPERDL-----TMSLVMARKRAGLTQAELSEKTGISQSDISRL 126 Query: 147 EQGRTIPEIKPARKIKQVTK 166 E G P I +I Sbjct: 127 ENGSRNPTIALLNRIANALN 146 >gi|262067783|ref|ZP_06027395.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] gi|291378506|gb|EFE86024.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] Length = 143 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ RI D+R N+ TQ +MA + S ++++E G + + + + D Sbjct: 1 MAEIKDRILDLRIENSLTQSQMAKIFDVGISTISMWEQGQRIPRPNTLQEICDYFNVDMD 60 Query: 89 WIYDGEVIDRRYEDVTNK 106 ++ I RY+ Sbjct: 61 YLMGRSDIRNRYQAGLKY 78 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I R+ +R + ++Q + K+ + ST+S +EQG+ IP ++I +D Sbjct: 1 MAEIKDRILDLRIENSLTQSQMAKIFDVGISTISMWEQGQRIPRPNTLQEICDYFNVDMD 60 Query: 171 WIYFGDEV 178 ++ ++ Sbjct: 61 YLMGRSDI 68 >gi|300770302|ref|ZP_07080181.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762778|gb|EFK59595.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 220 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK +R +Q+ A N ++ +E I AL + N + I + Sbjct: 3 NIGYNIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNL 62 Query: 91 YDGEVIDRRYEDVTNK 106 D ++ + + Sbjct: 63 IDKKLSVNEILNFNDY 78 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K +R KG+SQ F +L + +S+YE+ R P+I A KI L + Sbjct: 7 NIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNLI 63 >gi|229544959|ref|ZP_04433684.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|307287527|ref|ZP_07567570.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|229309851|gb|EEN75838.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|306501265|gb|EFM70568.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315164925|gb|EFU08942.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 180 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 36/81 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++++R N TQ+E+ + + ++ E + S S+ + ++ + Sbjct: 2 EIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + + ++++ + L Sbjct: 62 FSQQPLEQKIVYNEEESTLYY 82 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+++R K ++Q E G+ + +S E+ + P ++ I +V + Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|229144395|ref|ZP_04272800.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228639026|gb|EEK95451.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] Length = 404 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ ++A G+ +S ++ ENG + S++ Y+ ++ E ++ Sbjct: 4 LGEKIKTLRKEKKLTQTDLA-GSELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + ++ +K + Sbjct: 63 EDDDVEIVELIQQTEKLI 80 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLLED 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + + I++ + + K +K D+ Sbjct: 65 DDVEIVELIQQTE--KLIKANKYDE 87 >gi|197303602|ref|ZP_03168640.1| hypothetical protein RUMLAC_02330 [Ruminococcus lactaris ATCC 29176] gi|197297336|gb|EDY31898.1| hypothetical protein RUMLAC_02330 [Ruminococcus lactaris ATCC 29176] Length = 255 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD+ I +R +Q +A AV+ +ENG + L E+++S + Sbjct: 4 KDI---IYGLRVKKGLSQDALARKVMVTRQAVSRWENGETVPNTETLKLLSKEFDVSINT 60 Query: 90 IY 91 + Sbjct: 61 LL 62 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + + +R KG+SQ + + + +S +E G T+P + + + + ++ Sbjct: 1 MEVKDIIYGLRVKKGLSQDALARKVMVTRQAVSRWENGETVPNTETLKLLSKEFDVSINT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|115372718|ref|ZP_01460024.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|310823476|ref|YP_003955834.1| DigR protein [Stigmatella aurantiaca DW4/3-1] gi|115370199|gb|EAU69128.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309396548|gb|ADO74007.1| DigR protein [Stigmatella aurantiaca DW4/3-1] Length = 197 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 M + F+ +LQ+ L PE + +G I+D RK T K++A S Sbjct: 105 MEPDQFITAVRNALQKKGLSQDPEAD-LHRAIGRVIRDARKTQELTLKQLARRTGLSVSL 163 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ E S SI + + ++ ++ Sbjct: 164 LSQIERAESSASISSLYKIASALQLRMGELF 194 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 AIG ++ RK + ++ + + G+ S LS E+ + I KI + + Sbjct: 132 HRAIGRVIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSASISSLYKIASALQLRMG 191 Query: 171 WIY 173 ++ Sbjct: 192 ELF 194 >gi|223933601|ref|ZP_03625581.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|302024367|ref|ZP_07249578.1| DNA-binding protein [Streptococcus suis 05HAS68] gi|330833364|ref|YP_004402189.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223897727|gb|EEF64108.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329307587|gb|AEB82003.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 62 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+KD R +Q ++A VN+ EN + S+ + L + + ++ Sbjct: 2 NRVKDYRLLLGISQLDLAKAIGVSRQTVNMIENNKYNPSLDLCINLAKALQTDLNSLFWN 61 Query: 94 E 94 E Sbjct: 62 E 62 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R G+SQ++ K +G+ T++ E + P + + + + L+ +++ Sbjct: 1 MNRVKDYRLLLGISQLDLAKAIGVSRQTVNMIENNKYNPSLDLCINLAKALQTDLNSLFW 60 Query: 175 GD 176 + Sbjct: 61 NE 62 >gi|313607249|gb|EFR83697.1| gp33 [Listeria monocytogenes FSL F2-208] Length = 162 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 27/168 (16%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLES-AVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +++ +R ++ E+A S + +E G + + + Y++S D++ Sbjct: 6 EKLEYLRNRKGWSKVEVAKRLGMKASSTYSNWEYGNREPDLDTLKRIADLYDVSVDYLLG 65 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 + E + +DP A ++ I L+ E+ R Sbjct: 66 RTEKNSTIETIAA--HIDPNATDEEIRDI---------------------LAYIEEKRKE 102 Query: 153 PEIKPARKIKQVT---KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + A I ++ K +D +E + + ++ K K Sbjct: 103 HTNEEAVNIAEIAAKEDKEIDKFVTENEDFKAVAARVMNDAEAVKAVK 150 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +L+ +R KG S++E K LGM +ST SN+E G P++ ++I + +D++ Sbjct: 5 PEKLEYLRNRKGWSKVEVAKRLGMKASSTYSNWEYGNREPDLDTLKRIADLYDVSVDYLL 64 Query: 174 FGDE 177 E Sbjct: 65 GRTE 68 >gi|313887651|ref|ZP_07821333.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846260|gb|EFR33639.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 63 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K IR KG+ Q E + + T++ E + P ++ A K+ + +D ++ Sbjct: 1 MKNHIKEIRGQKGLLQQELADICNVSRQTVNAIENNKYDPTLELAFKLAAALETTVDKLF 60 Query: 174 FGD 176 + Sbjct: 61 IYE 63 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK+IR Q+E+A N VN EN ++ A L E + D ++ Sbjct: 3 NHIKEIRGQKGLLQQELADICNVSRQTVNAIENNKYDPTLELAFKLAAALETTVDKLFIY 62 Query: 94 E 94 E Sbjct: 63 E 63 >gi|300811613|ref|ZP_07092093.1| putative repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497408|gb|EFK32450.1| putative repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325685247|gb|EGD27365.1| SOS regulatory protein LexA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 206 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +GT+IK RK TQKE+A + V +E G+ + + + + +IS Sbjct: 2 KIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVSE 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + ++ I + Sbjct: 62 LLGNDDAKPKNLVDLADAKVISIPILGTI 90 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++K RK KG++Q E +LG+ +T++++EQG + P K I + Sbjct: 1 MKIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVS 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSS 193 + D+ + A S Sbjct: 61 ELLGNDDAKPKNLVDLADAKVIS 83 >gi|257452737|ref|ZP_05618036.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|257466598|ref|ZP_05630909.1| MerR family transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] gi|315917753|ref|ZP_07913993.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] gi|317059278|ref|ZP_07923763.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313684954|gb|EFS21789.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313691628|gb|EFS28463.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] Length = 182 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK R + + +E+A+ + S ++ E G S SI + ++ ++ Sbjct: 3 IGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSYLI 62 Query: 92 DGEVIDRRYEDVTNKK 107 + + I + + V + Sbjct: 63 EDDEIQKNVDFVKKEN 78 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG ++K R +K +S E + + S LS EQG+ P I+ +KI + + Sbjct: 1 MSIGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DE+ + + + + + K + Sbjct: 61 LIEDDEIQKNVDFVKKENVKYIESRDSNTKMA 92 >gi|209966969|ref|YP_002299884.1| transcriptional regulator, Cro [Rhodospirillum centenum SW] gi|209960435|gb|ACJ01072.1| transcriptional regulator, Cro [Rhodospirillum centenum SW] Length = 191 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + E +G R++ R TQ+E+ V +E G ++ + L N Sbjct: 15 SEEDAAVSAALGERVRARRGLLGMTQQELGRRVGLTFQQVQKYERGSNRVAVPTLIKLAN 74 Query: 82 EYEISFDWIYDG 93 + + + +G Sbjct: 75 ALDTTPADLLEG 86 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+++ R GM+Q E G+ +G+ + YE+G + K+ + Sbjct: 24 ALGERVRARRGLLGMTQQELGRRVGLTFQQVQKYERGSNRVAVPTLIKLANALDTTPADL 83 Query: 173 YFG 175 G Sbjct: 84 LEG 86 >gi|163841313|ref|YP_001625718.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162954789|gb|ABY24304.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 194 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 26/82 (31%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+ R A + +A S ++ E G ++ + L Sbjct: 6 TQDLDAVIRQRIRAARLARGWSLDSLAAKCALSPSTLSRIETGNRRIALDQLVPLAKALG 65 Query: 85 ISFDWIYDGEVIDRRYEDVTNK 106 ++ D + + D + Sbjct: 66 MTLDELVESTDEDSVVIRPEPE 87 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R+++ R +G S + STLS E G + + + LD + Sbjct: 12 VIRQRIRAARLARGWSLDSLAAKCALSPSTLSRIETGNRRIALDQLVPLAKALGMTLDEL 71 Query: 173 Y 173 Sbjct: 72 V 72 >gi|91778552|ref|YP_553760.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691212|gb|ABE34410.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 91 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 32/82 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ G ++ +R+A +Q+++A A S V E G SI L +++ + Sbjct: 6 REFGATVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEH 65 Query: 90 IYDGEVIDRRYEDVTNKKRLDP 111 + + +DP Sbjct: 66 LLTPSSDASGIAVLARAAFVDP 87 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GA ++ +R+ +G SQ + + G+ S + E+G I I K+ + + ++ + Sbjct: 7 EFGATVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEHL 66 Query: 173 YF 174 Sbjct: 67 LT 68 >gi|325961603|ref|YP_004239509.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323467690|gb|ADX71375.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 201 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R++ R++ T ++A A V E G + S+ L + + I + Sbjct: 12 IGSRVRQERQSRGWTLDQLAEAAGVSRRMVVNVEQGAANPSVGTLLRISDALGIGLPALV 71 Query: 92 D 92 D Sbjct: 72 D 72 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 AIG+R++ R+ +G + + + G+ + N EQG P + +I L Sbjct: 11 AIGSRVRQERQSRGWTLDQLAEAAGVSRRMVVNVEQGAANPSVGTLLRISDALGIGL 67 >gi|322516911|ref|ZP_08069808.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322124534|gb|EFX96016.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 158 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|322377260|ref|ZP_08051752.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334] gi|321281973|gb|EFX58981.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334] Length = 194 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K++RK +QKE+A + E ++ +ENG A L + + + ++ Sbjct: 2 NRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQMLADFFGVHIGYLL 59 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +RK+K +SQ E K + + TLS +E G + + + A+ + H+ ++ Sbjct: 1 MNRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQMLADFFGVHIGYLL 59 >gi|317498013|ref|ZP_07956317.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894689|gb|EFV16867.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 136 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K IRKA TQ+E+AI + + ++ +E G+ L + EI + Sbjct: 4 ENLKIIRKAKGYTQEELAIKIHVVRQTISKWEKGLSVPDADTLSKLADVLEIKVSELLGS 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 E+ + ++ ++L + LK+ R + Sbjct: 64 EIKEETNKNEV-AEQLAKISEQLALKNRRHKR 94 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK IRK KG +Q E + + T+S +E+G ++P+ K+ V + + + Sbjct: 1 MFNENLKIIRKAKGYTQEELAIKIHVVRQTISKWEKGLSVPDADTLSKLADVLEIKVSEL 60 Query: 173 YFGD--EVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + E + S + + K+++ Sbjct: 61 LGSEIKEETNKNEVAEQLAKISEQLALKNRRHK 93 >gi|317055223|ref|YP_004103690.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447492|gb|ADU21056.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 160 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 49/134 (36%), Gaps = 13/134 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST-SIRYALYLRNEYEISFDWI 90 V R+K R + QKE+A + +EN + S + L + + Sbjct: 37 VSDRLKFYRISCGLMQKEIAAQIGVDRTTYARWENNVLSAYPLDKLTLLAEIFGCKVTDL 96 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + G+ +++++K K +++ +L+ + + ++E R Sbjct: 97 L------------DEYNKFLINGQGSYIRNLQKKKSLTRCRLAELMSVSVGRVKDWESER 144 Query: 151 TIPEIKPARKIKQV 164 +K ++ ++ Sbjct: 145 KRVSMKCYVRLMEI 158 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 3/86 (3%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 I + + + + + D + RLK R G+ Q E +G+ +T + +E Sbjct: 13 IVTLYIHSFKPKRIPDFALNDNSTVSDRLKFYRISCGLMQKEIAAQIGVDRTTYARWENN 72 Query: 150 --RTIPEIKPARKIKQVTKKHLDWIY 173 P + + ++ + + Sbjct: 73 VLSAYP-LDKLTLLAEIFGCKVTDLL 97 >gi|163853865|ref|YP_001641908.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163665470|gb|ABY32837.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 209 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RKA N + E+A + +S ++ E + ++ L ++S + + Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85 Query: 91 YDGEVIDRRYEDVT 104 + E + Sbjct: 86 LATSDEEPFIERFS 99 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-F 174 ++ +RK +S E + G+ S +S E+ T P + ++ Q ++ + Sbjct: 29 KTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVLAT 88 Query: 175 GDEVIVPKSIKRAKGNQ 191 DE + RA + Sbjct: 89 SDEEPFIERFSRADTPR 105 >gi|111221785|ref|YP_712579.1| putative DNA-binding protein [Frankia alni ACN14a] gi|111149317|emb|CAJ61003.1| putative DNA-binding protein [Frankia alni ACN14a] Length = 500 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 VGTR++++R+ +Q E+A S +N E+ ++ L + + + Sbjct: 6 VGTRLRELREERAMSQVELARLLGISPSYLNQIEHNSRPLTVPVLLRITEAFGVD 60 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RL+ +R+++ MSQ+E +LLG+ S L+ E + +I + Sbjct: 1 MQKTFVGTRLRELREERAMSQVELARLLGISPSYLNQIEHNSRPLTVPVLLRITEAFGVD 60 Query: 169 LDWI 172 + Sbjct: 61 AGFF 64 >gi|328954706|ref|YP_004372039.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328455030|gb|AEB06224.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 191 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 33/89 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R++ +RK T ++++ ++ ENG+ S ++ + N +S + Sbjct: 18 QLGERLRSLRKKKVLTITQLSLYTGLSVGFLSNMENGISSPTVANLTKVCNALNVSILDV 77 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +D ++K Sbjct: 78 LGEGDALHEIVRDGEAEIIDVPESSMKMK 106 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH-LDWIYF 174 RL+S+RK K ++ + G+ LSN E G + P + K+ LD + Sbjct: 21 ERLRSLRKKKVLTITQLSLYTGLSVGFLSNMENGISSPTVANLTKVCNALNVSILDVLGE 80 Query: 175 GD---EVIVPKSIKRAKGNQSSKKSK 197 GD E++ + +SS K K Sbjct: 81 GDALHEIVRDGEAEIIDVPESSMKMK 106 >gi|320094251|ref|ZP_08026052.1| cro/CI family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978817|gb|EFW10359.1| cro/CI family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 71 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +R ++ +Q EFG LG+ T+ E G+ P + A KI V K ++ I+ Sbjct: 1 MRNNVKELRSEQRWTQAEFGASLGVSRQTVIAIENGKYDPSLGLAFKIASVFGKCIEDIF 60 Query: 174 FGD 176 + D Sbjct: 61 YPD 63 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K++R TQ E V ENG S+ A + + + + I+ Sbjct: 3 NNVKELRSEQRWTQAEFGASLGVSRQTVIAIENGKYDPSLGLAFKIASVFGKCIEDIFYP 62 Query: 94 EVI 96 + Sbjct: 63 DPD 65 >gi|239630223|ref|ZP_04673254.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527835|gb|EEQ66836.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 148 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ + ++Q + + L + T+S++E R+ P+I +I LD Sbjct: 1 MQFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ + K Q +K Sbjct: 61 LLREDQTMTDHYDAIDKHAQRDQK 84 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ TQ ++A + ++ +EN I + + + Y+IS D + Sbjct: 2 QFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQL 61 Query: 91 YDGEVIDRRYED 102 + + D Sbjct: 62 LREDQTMTDHYD 73 >gi|229589439|ref|YP_002871558.1| putative HTH-type regulatory protein [Pseudomonas fluorescens SBW25] gi|312961102|ref|ZP_07775607.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|229361305|emb|CAY48169.1| putative HTH-type regulatory potein [Pseudomonas fluorescens SBW25] gi|311284760|gb|EFQ63336.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 84 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + Q + I+ +R+ N TQ+++A+ A + V+ E + S+ L Sbjct: 1 MTQDYEQLRLQLAENIRLMRRVKNLTQEQLALMAEVDRTYVSQIERCTGNPSLLVLCKLA 60 Query: 81 NEYEISFDWIY 91 N +EI+ D + Sbjct: 61 NIFEITADQLL 71 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 28/64 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R+ K ++Q + + + + +S E+ P + K+ + + D + Sbjct: 14 ENIRLMRRVKNLTQEQLALMAEVDRTYVSQIERCTGNPSLLVLCKLANIFEITADQLLVE 73 Query: 176 DEVI 179 +++ Sbjct: 74 PDIL 77 >gi|167622932|ref|YP_001673226.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352954|gb|ABZ75567.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 182 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +K +RK +Q+E+A A S +++ E S S+ + + +S Sbjct: 2 DIGENLKKVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVEF 61 Query: 91 YDGEVIDRRYEDV 103 + E + V Sbjct: 62 FSIEDTQETEQKV 74 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG LK +RK+KG+SQ E K G+ NST+S E+ P + +K+ L Sbjct: 1 MDIGENLKKVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + ++ + + ++ Sbjct: 61 FFSIEDTQETEQKVVYRSDE 80 >gi|257894935|ref|ZP_05674588.1| phage CI repressor [Enterococcus faecium 1,231,408] gi|294620540|ref|ZP_06699842.1| Transcriptional regulator, xre family [Enterococcus faecium U0317] gi|121309458|dbj|BAF44068.1| hypothetical protein [Enterococcus faecium] gi|257831314|gb|EEV57921.1| phage CI repressor [Enterococcus faecium 1,231,408] gi|291599794|gb|EFF30797.1| Transcriptional regulator, xre family [Enterococcus faecium U0317] Length = 105 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK R TQ+++A + ++ +ENG + +++S D I Sbjct: 3 ISKVIKQKRIEKQLTQEDLAEMLLVSKKTISNWENGRTIPDTENLIQFAKLFDLSLDNIL 62 Query: 92 DGEVIDRRYEDVTN 105 GE Sbjct: 63 LGEEKIMVKNYGKK 76 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +K R +K ++Q + ++L + T+SN+E GRTIP+ + + ++ LD Sbjct: 1 MTISKVIKQKRIEKQLTQEDLAEMLLVSKKTISNWENGRTIPDTENLIQFAKLFDLSLDN 60 Query: 172 IYFGDEVIVPKS 183 I G+E I+ K+ Sbjct: 61 ILLGEEKIMVKN 72 >gi|47564254|ref|ZP_00235299.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558406|gb|EAL16729.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 125 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|332362028|gb|EGJ39830.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 158 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ + A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q +F +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|227893879|ref|ZP_04011684.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] gi|227864368|gb|EEJ71789.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] Length = 65 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K RK N +Q +A +NL EN + S+ L L + + ++ Sbjct: 2 NRVKKYRKQKNLSQMALAKKIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNSLF 59 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK K +SQ+ K +G+ T++ E + P ++ + L+ +++ Sbjct: 1 MNRVKKYRKQKNLSQMALAKKIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNSLFW 60 Query: 175 -GDE 177 GDE Sbjct: 61 DGDE 64 >gi|194291408|ref|YP_002007315.1| transcriptional regulator Xre family [Cupriavidus taiwanensis LMG 19424] gi|193225312|emb|CAQ71256.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis LMG 19424] Length = 198 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG ++ +R+ + E++ A +S ++ E + + ++ L N +S Sbjct: 15 PAVGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTD 74 Query: 90 IYDGEVIDRR 99 G V++R Sbjct: 75 FLAGGVVERP 84 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G L+++R+ + +S E + G+ S LS E+ P + ++ L Sbjct: 16 AVGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 75 Query: 173 YFGDEVIVP 181 G V P Sbjct: 76 LAGGVVERP 84 >gi|170288077|ref|YP_001738315.1| XRE family transcriptional regulator [Thermotoga sp. RQ2] gi|281411883|ref|YP_003345962.1| XRE family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|170175580|gb|ACB08632.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2] gi|281372986|gb|ADA66548.1| transcriptional regulator, XRE family [Thermotoga naphthophila RKU-10] Length = 176 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R + TQ+E+A + S ++ E+ S SI + + Sbjct: 3 IGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 +R + + Sbjct: 63 SDVEEERVVFKKEERVPV 80 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +L+ +R KG++Q E + + S +S E +T P I +I + L Sbjct: 1 MRIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKH 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + E K + Sbjct: 61 FFSDVEEERVVFKKEER 77 >gi|92112522|ref|YP_572450.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795612|gb|ABE57751.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 178 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R+A + +A A +S ++ E G + +I L N ++F + Sbjct: 10 ANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTLGVTFSELLAE 69 Query: 94 EV 95 + Sbjct: 70 KT 71 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I A L+ +R+ +G S + + STLS E G P I+ + + Sbjct: 7 VIVANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTLGVTFSEL 66 Query: 173 Y 173 Sbjct: 67 L 67 >gi|17547868|ref|NP_521270.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430173|emb|CAD16858.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 113 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R A +K+Q+ +A A + ++ E G+ + SI + ++ ++ Sbjct: 24 LGERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIETLANICYALNVTLAELF 83 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 R A +K R Sbjct: 84 ---GPMDGISLKPTGTRRANAATPPEIKRSR 111 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+K R SQ + + +S+ E+G P I+ I L + Sbjct: 23 ALGERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIETLANICYALNVTLAEL 82 Query: 173 YFGDEVIVPKSIKRAKGN 190 + + I K + N Sbjct: 83 FGPMDGISLKPTGTRRAN 100 >gi|330825988|ref|YP_004389291.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329311360|gb|AEB85775.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 117 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + +GT+I +RK TQ ++A ++ E G + S++ + + + Sbjct: 9 KPLAQRLGTQIATLRKTKEWTQADLAERIGVEPETISRVERGATTPSLQTLEKISHCLRV 68 Query: 86 SFDWIY 91 + Sbjct: 69 RIGELL 74 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ ++RK K +Q + + +G+ T+S E+G T P ++ KI + + + Sbjct: 18 QIATLRKTKEWTQADLAERIGVEPETISRVERGATTPSLQTLEKISHCLRVRIGELL 74 >gi|317488752|ref|ZP_07947286.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA] gi|316912122|gb|EFV33697.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA] Length = 112 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ R+ +R+ +Q+E+A AV+ +E S + L Y +S Sbjct: 14 EIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVS 69 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 I RL ++R+++G SQ E + LG+ +S +E+ + P+ + ++ Sbjct: 14 EIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVS 69 >gi|295099455|emb|CBK88544.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 124 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K++G RI+ RK TQ+E+A ++ V E G+ + S +S Sbjct: 2 ELIKELGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLS 61 Query: 87 FDWIYDGEVIDRRYEDVT 104 D + + ++ + Sbjct: 62 LDSLMNLDLPEDEQAAND 79 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ RK+KG++Q E L + + E+G P + R +V LD + D Sbjct: 11 IQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLSLDSLMNLD 69 >gi|228958063|ref|ZP_04119798.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|296502381|ref|YP_003664081.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] gi|228801580|gb|EEM48462.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323433|gb|ADH06361.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 404 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ ++A G+ +S ++ ENG + S++ Y+ ++ E ++ Sbjct: 4 LGEKIKTLRKEKKLTQTDLA-GSELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + ++ +K + Sbjct: 63 EDDDVEIVELIQQTEKLI 80 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLLED 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + + I++ + + K +K D+ Sbjct: 65 DDVEIVELIQQTE--KLIKTNKYDE 87 >gi|121609687|ref|YP_997494.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554327|gb|ABM58476.1| transcriptional regulator [Verminephrobacter eiseniae EF01-2] Length = 178 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ ++R + + +A A + ++ E G+ S+ L + S ++ Sbjct: 2 LGKRLHELRLTRGMSLRALAQAAGVSPTLLSQIERGVTEPSLSTLRALSAVFGESMAALF 61 Query: 92 DGEVIDRRY 100 + Sbjct: 62 RDPAAPSVW 70 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RL +R +GMS + G+ + LS E+G T P + R + V + + + Sbjct: 1 MLGKRLHELRLTRGMSLRALAQAAGVSPTLLSQIERGVTEPSLSTLRALSAVFGESMAAL 60 Query: 173 YFG 175 + Sbjct: 61 FRD 63 >gi|30021207|ref|NP_832838.1| ans operon repressor protein [Bacillus cereus ATCC 14579] gi|218232005|ref|YP_002367824.1| transcriptional regulator AnsR [Bacillus cereus B4264] gi|218898185|ref|YP_002446596.1| transcriptional regulator AnsR [Bacillus cereus G9842] gi|228969571|ref|ZP_04130373.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar sotto str. T04001] gi|229151303|ref|ZP_04279508.1| HTH-type transcriptional regulator ansR [Bacillus cereus m1550] gi|29896761|gb|AAP10039.1| Ans operon repressor protein [Bacillus cereus ATCC 14579] gi|218159962|gb|ACK59954.1| transcriptional regulator AnsR [Bacillus cereus B4264] gi|218540854|gb|ACK93248.1| transcriptional regulator AnsR [Bacillus cereus G9842] gi|228632148|gb|EEK88772.1| HTH-type transcriptional regulator ansR [Bacillus cereus m1550] gi|228790129|gb|EEM37909.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar sotto str. T04001] Length = 125 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|15894837|ref|NP_348186.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024511|gb|AAK79526.1|AE007666_1 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508975|gb|ADZ20611.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 118 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 32/80 (40%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + ++G ++K R+ N Q ++A ++ FE G + + L Y + Sbjct: 2 FKHEIGRKLKAARENANLKQSDVAKIIGSTFQKISSFETGRTRVDLETLIRLCEIYNVDA 61 Query: 88 DWIYDGEVIDRRYEDVTNKK 107 D+I + + + ++ Sbjct: 62 DYILSTDKKNSNNLTLKPEE 81 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 42/87 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + IG +LK+ R++ + Q + K++G +S++E GRT +++ ++ ++ Sbjct: 1 MFKHEIGRKLKAARENANLKQSDVAKIIGSTFQKISSFETGRTRVDLETLIRLCEIYNVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKK 195 D+I D+ + + + K Sbjct: 61 ADYILSTDKKNSNNLTLKPEESNLIVK 87 >gi|116495820|ref|YP_807554.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116105970|gb|ABJ71112.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 209 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ + ++Q + + L + T+S++E R+ P+I +I LD Sbjct: 1 MQFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ + K Q +K Sbjct: 61 LLREDQTMTDHYDAIDKHAQRDQK 84 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ TQ ++A + ++ +EN I + + + Y+IS D + Sbjct: 2 QFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQL 61 Query: 91 YDGEVIDRRYED 102 + + D Sbjct: 62 LREDQTMTDHYD 73 >gi|99081750|ref|YP_613904.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038030|gb|ABF64642.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 123 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 34/97 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E G S + + +++ + + Sbjct: 9 VGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDALDVNISFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +G + + + D L +R + Sbjct: 69 EGLQDETKSVPDKARVPADLMGDKEALDLVRSYYAIP 105 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ R GM+Q + + +G+ + YE G I ++ + Sbjct: 7 IHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDALDVNISF 66 Query: 172 IYFGDEVIVPKSIKRAK 188 + G + +A+ Sbjct: 67 FFEGLQDETKSVPDKAR 83 >gi|182625431|ref|ZP_02953203.1| LexA repressor [Clostridium perfringens D str. JGS1721] gi|177909271|gb|EDT71729.1| LexA repressor [Clostridium perfringens D str. JGS1721] Length = 358 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 31/88 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RK N +Q E+A + + +E +I + L S D + Sbjct: 8 NLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNCSIDSL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + D+ N I +L Sbjct: 68 LGLNHPNETTNDLNNLDLSKKIFILNKL 95 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K RK +SQ E + LG+ +T+ YE+ P I ++ ++ +D + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNCSIDSLL 68 >gi|90414870|ref|ZP_01222836.1| putative transcriptional regulator [Photobacterium profundum 3TCK] gi|90324048|gb|EAS40639.1| putative transcriptional regulator [Photobacterium profundum 3TCK] Length = 208 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K+IR A+ T +E + S ++ EN S + + L N + + Sbjct: 28 KLGKRLKEIRMAHGLTLEEASKRTGLARSTLSKIENEQISPTFQAMQKLANGLSVDIPQL 87 Query: 91 Y 91 + Sbjct: 88 F 88 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 +++ P +G RLK IR G++ E K G+ STLS E + P Sbjct: 10 YPSMSVAKELESEKIKPLKLGKRLKEIRMAHGLTLEEASKRTGLARSTLSKIENEQISPT 69 Query: 155 IKPARKIKQVTKKHLDWIY 173 + +K+ + ++ Sbjct: 70 FQAMQKLANGLSVDIPQLF 88 >gi|81427764|ref|YP_394763.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609405|emb|CAI54451.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 68 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R+K +R ++ +Q + + G+ + + E+ + P ++ A KI QV + + Sbjct: 1 MIQNRIKVLRAERNWTQADLAERTGISRQAVISIEKYKYTPSLELAFKIAQVFGVEITTV 60 Query: 173 YFGDEV 178 + +E Sbjct: 61 FSPEED 66 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK +R N TQ ++A AV E + S+ A + + + ++ Sbjct: 2 IQNRIKVLRAERNWTQADLAERTGISRQAVISIEKYKYTPSLELAFKIAQVFGVEITTVF 61 Query: 92 DGEVIDR 98 E + Sbjct: 62 SPEEDSK 68 >gi|319646699|ref|ZP_08000928.1| hypothetical protein HMPREF1012_01965 [Bacillus sp. BT1B_CT2] gi|317391287|gb|EFV72085.1| hypothetical protein HMPREF1012_01965 [Bacillus sp. BT1B_CT2] Length = 183 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K V IK +RK N + +++ + + E G S +I + N + Sbjct: 1 MNSIEKQVAENIKRLRKVRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQ 60 Query: 85 ISFDWI 90 +SF + Sbjct: 61 VSFTSL 66 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +K +RK + S + + G+ L+ E+G + P I KI + Sbjct: 10 ENIKRLRKVRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQVS 62 >gi|312864492|ref|ZP_07724723.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] gi|311099619|gb|EFQ57832.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] Length = 137 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 37/65 (56%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I ++S+RK SQ +++G+ TLS +E G ++P+I + ++ ++ + LD + Sbjct: 1 MINKTIQSLRKKADYSQETLAEMVGVSRQTLSKWELGESLPDIISSSRLAEIFEISLDEL 60 Query: 173 YFGDE 177 GDE Sbjct: 61 VKGDE 65 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I+ +RK + +Q+ +A ++ +E G I + L +EIS D + Sbjct: 2 INKTIQSLRKKADYSQETLAEMVGVSRQTLSKWELGESLPDIISSSRLAEIFEISLDELV 61 Query: 92 DGEVIDRRYEDVT 104 G+ + + Sbjct: 62 KGDELPFMSKPTE 74 >gi|302545781|ref|ZP_07298123.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302463399|gb|EFL26492.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 469 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 20/142 (14%) Query: 10 SLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 S++ E+++ + E + G RI R+ TQ+ +A+ AN +S ++ E G Sbjct: 63 SVQGRTEFSMPRSNE-----EHTGARIARTRRERGLTQQGLAMRANVSKSLLSKVECGQK 117 Query: 70 STSIRYALYLRNEYEISFDWIYDGEV-------------IDRRYEDVTNKKRLDPYAIGA 116 S ++ + R LD Sbjct: 118 PASPSLIAACARALSVTTSDLLGQPYTQELRRERLDEVIQPIRVSMENWDIPLDWQVPAR 177 Query: 117 RLKSIR--KDKGMSQIEFGKLL 136 + IR +K + Q + L Sbjct: 178 PVALIRADMEKVLVQRRQAEYL 199 Score = 41.1 bits (95), Expect = 0.097, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 28/81 (34%) Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 G V+ + + R + GAR+ R+++G++Q + S LS E G+ Sbjct: 59 GTVLSVQGRTEFSMPRSNEEHTGARIARTRRERGLTQQGLAMRANVSKSLLSKVECGQKP 118 Query: 153 PEIKPARKIKQVTKKHLDWIY 173 + + Sbjct: 119 ASPSLIAACARALSVTTSDLL 139 >gi|255652542|ref|ZP_05399444.1| transcriptional regulator [Clostridium difficile QCD-37x79] Length = 105 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++++RK T KE+A N + +++ +EN I+ L Y++S D+I Sbjct: 2 ISDRLRELRKEKGYTIKELAQIINVSDISISRYENNKRDADIKTLKELAKLYDVSLDYIT 61 Query: 92 D-GEVIDRRYEDVTNKKRLDPY 112 + + + K LD Y Sbjct: 62 CLTDNRENIQLEEEEVKLLDNY 83 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RL+ +RK+KG + E +++ + + ++S YE + +IK +++ ++ LD+I Sbjct: 1 MISDRLRELRKEKGYTIKELAQIINVSDISISRYENNKRDADIKTLKELAKLYDVSLDYI 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + ++ + + D KS Sbjct: 61 TCLTDNRENIQLEEEEVKLLDNYRELDTKSK 91 >gi|212711630|ref|ZP_03319758.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens DSM 30120] gi|212685732|gb|EEB45260.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens DSM 30120] Length = 95 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 34/84 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG +I+ +R++ + K+++ + ++ +ENG + + + + + + Sbjct: 7 KAVGLKIRALRESRGISGKKLSELMGISQQHLSRYENGDVNIHVDTLYHFSLIFSVDPAY 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYA 113 + + + K+ A Sbjct: 67 FFAEFNERTGNREEQDSKKSYYAA 90 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 8/95 (8%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +++ A+G +++++R+ +G+S + +L+G+ LS YE G + + Sbjct: 1 MEKIVSKAVGLKIRALRESRGISGKKLSELMGISQQHLSRYENGDVNIHVDTLYHFSLIF 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + GN+ + SKK Sbjct: 61 SVDPAYFF--------AEFNERTGNREEQDSKKSY 87 >gi|261408465|ref|YP_003244706.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284928|gb|ACX66899.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 189 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 31/86 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K VG ++ IRK+ + +A ++ + E G + +I + + Sbjct: 1 MEPIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 ISF + + + + + Sbjct: 61 ISFTTLIEEAETEVTVVSPDDVEPFH 86 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G L++IRK +G+S +L G+ + L E+G + P I +I Sbjct: 5 HKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGISFT 64 Query: 171 WIYFGDEVIV 180 + E V Sbjct: 65 TLIEEAETEV 74 >gi|163759848|ref|ZP_02166932.1| hypothetical protein HPDFL43_16496 [Hoeflea phototrophica DFL-43] gi|162282806|gb|EDQ33093.1| hypothetical protein HPDFL43_16496 [Hoeflea phototrophica DFL-43] Length = 205 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 E +G R++ +R A+ K++A A+ ES ++ E G S SI + Sbjct: 14 ASETDHNDVLIGARLRHMRIASGLKLKDVAAAADCSESMLSKVETGHVSPSINMLHRITK 73 Query: 82 EYEISFDWIY 91 ++ ++ Sbjct: 74 VLNVNISGLF 83 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 E ++ + ++ + IGARL+ +R G+ + S LS E G Sbjct: 1 MASEQQRKKIDTAASETDHNDVLIGARLRHMRIASGLKLKDVAAAADCSESMLSKVETGH 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 P I +I +V ++ ++ E Sbjct: 61 VSPSINMLHRITKVLNVNISGLFAPVEET 89 >gi|154500312|ref|ZP_02038350.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC 29799] gi|150271044|gb|EDM98318.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC 29799] Length = 111 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +Q D+G R++ R+ T+++MA A+ E G SI + L + Sbjct: 2 EKQQLIDIGQRLRQRRQDLGLTREKMAELADIGTGYYGQLEVGTSQMSIDTLIKLSHSMH 61 Query: 85 ISFDWIYDGEVIDRRYED 102 + ++I G+ Sbjct: 62 LPMEYILFGDGYIPGDPS 79 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ R+D G+++ + +L + E G + I K+ +++I FG Sbjct: 11 QRLRQRRQDLGLTREKMAELADIGTGYYGQLEVGTSQMSIDTLIKLSHSMHLPMEYILFG 70 Query: 176 D 176 D Sbjct: 71 D 71 >gi|284032035|ref|YP_003381966.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811328|gb|ADB33167.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 419 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R++ +R +QK +A S ++L E G ++ L+L E + + Sbjct: 8 LGSRLRTLRMQKGLSQKALAGDV-VTPSYISLLEAGERMPTLDVILHLARALETTPAELL 66 Query: 92 DGEVIDRRYED 102 + D + Sbjct: 67 GDDYRDVFAPN 77 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RL+++R KG+SQ + + S +S E G +P + + + + + Sbjct: 10 SRLRTLRMQKGLSQKALAGDV-VTPSYISLLEAGERMPTLDVILHLARALETTPAELLGD 68 Query: 176 D--EVIVPKSIKRAKGN 190 D +V P S A G+ Sbjct: 69 DYRDVFAPNSTATASGS 85 >gi|258510225|ref|YP_003183659.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476951|gb|ACV57270.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 106 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 27/86 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ RK + TQ ++A + + E G + + + + + + Sbjct: 4 FGRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDVEELC 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 ++ + D A Sbjct: 64 GPTWPGDGWDRGAAEDAADSRAGHGH 89 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A G RL++ RK K M+Q + + LG+ +T+ E+G P I ++ Sbjct: 1 MDAFGRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDVE 60 Query: 171 WI 172 + Sbjct: 61 EL 62 >gi|229145703|ref|ZP_04274084.1| HTH-type transcriptional regulator ansR [Bacillus cereus BDRD-ST24] gi|228637684|gb|EEK94133.1| HTH-type transcriptional regulator ansR [Bacillus cereus BDRD-ST24] Length = 128 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 6 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 63 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D Sbjct: 1 MRRMLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVD 60 Query: 171 WIY 173 +I Sbjct: 61 YIL 63 >gi|169333644|ref|ZP_02860837.1| hypothetical protein ANASTE_00028 [Anaerofustis stercorihominis DSM 17244] gi|169259638|gb|EDS73604.1| hypothetical protein ANASTE_00028 [Anaerofustis stercorihominis DSM 17244] Length = 126 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +R N +Q+ +A N SA+ +E+ + + ++++ D + Sbjct: 5 EKLKKLRIDNEMSQENLAELLNVSRSAIAKWESSKGMPDLENIKMIAPIFDVTIDSLIRD 64 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK +R D MSQ +LL + S ++ +E + +P+++ + I + +D Sbjct: 1 MGFSEKLKKLRIDNEMSQENLAELLNVSRSAIAKWESSKGMPDLENIKMIAPIFDVTIDS 60 Query: 172 IYFG 175 + Sbjct: 61 LIRD 64 >gi|120401475|ref|YP_951304.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954293|gb|ABM11298.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 180 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R+ T ++A +S ++ E G SI AL + E+ ++ + Sbjct: 5 LRAVRQERGMTLDDLAADTGLTKSYLSKVERGQSVPSIAAALKISRALEVDVAQLFSDDP 64 Query: 96 I 96 Sbjct: 65 E 65 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+++R+++GM+ + G+ S LS E+G+++P I A KI + + + ++ D Sbjct: 5 LRAVRQERGMTLDDLAADTGLTKSYLSKVERGQSVPSIAAALKISRALEVDVAQLFSDDP 64 Query: 178 VIVPKSIKRA 187 + S+ RA Sbjct: 65 EVSTISVDRA 74 >gi|84515302|ref|ZP_01002664.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84510585|gb|EAQ07040.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 123 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 34/97 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R N TQ+++A + +E GM S + N + + + Sbjct: 9 VGKRIRHRRWMNGTTQQQLAENVGIKFQQIQKYETGMNRVSASRLWDISNVLGVPVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +G E + D L+ +R + Sbjct: 69 EGYDAQPAVETRISDMPGDILTDKEALELLRSYYAIP 105 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G R++ R G +Q + + +G+ + YE G I V Sbjct: 1 MKHPVDVYVGKRIRHRRWMNGTTQQQLAENVGIKFQQIQKYETGMNRVSASRLWDISNVL 60 Query: 166 KKHLDWIYFG 175 + + + G Sbjct: 61 GVPVSFFFEG 70 >gi|325678575|ref|ZP_08158185.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109625|gb|EGC03831.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 71 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++D+R+ ++ Q+E+A + + +E G+ + + L Y +S D+I Sbjct: 4 RRLRDLREDHDLKQREVAEMLQTTQQVYSEYEKGIREIPLHRVITLAKYYGVSIDYIV 61 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +R+D + Q E ++L S YE+G + + + +D+I Sbjct: 1 MYYRRLRDLREDHDLKQREVAEMLQTTQQVYSEYEKGIREIPLHRVITLAKYYGVSIDYI 60 Query: 173 YFGDEVIVPKS 183 +V P+ Sbjct: 61 VGLTDVPEPRR 71 >gi|259417313|ref|ZP_05741232.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259346219|gb|EEW58033.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 204 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 24/78 (30%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E +VG I+ RK T + + + ++ E + S+ + Sbjct: 1 MPREKPPQEPNVGPAIRKRRKQLKLTLQALCDKSGVSVGYLSQVERDNATPSLGTLAQIS 60 Query: 81 NEYEISFDWIYDGEVIDR 98 ++ D+ Sbjct: 61 AALDVGLDYFISASKPSD 78 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 19/56 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ RK ++ G+ LS E+ P + +I LD+ Sbjct: 16 IRKRRKQLKLTLQALCDKSGVSVGYLSQVERDNATPSLGTLAQISAALDVGLDYFI 71 >gi|210614272|ref|ZP_03290143.1| hypothetical protein CLONEX_02356 [Clostridium nexile DSM 1787] gi|210150756|gb|EEA81765.1| hypothetical protein CLONEX_02356 [Clostridium nexile DSM 1787] Length = 209 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + K+ A+G LK + Sbjct: 64 VSIEWL-RGETDEYETDITDKKELQIRDAMGDILKQL 99 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL-RGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 DEYETDITDKKE 85 >gi|78065731|ref|YP_368500.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77966476|gb|ABB07856.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 206 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 32/89 (35%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++D+R T +A + S ++L E S + L +S Sbjct: 14 INERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSL 73 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 ++ G+ D + + + + A Sbjct: 74 AGLFGGDQDDTPTQPLARHAQQAEWRDPA 102 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+ P K+ L ++ G Sbjct: 20 RRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAGLFGG 79 Query: 176 DEVIVP 181 D+ P Sbjct: 80 DQDDTP 85 >gi|33151354|ref|NP_872707.1| transcription regulator [Haemophilus ducreyi 35000HP] gi|33147574|gb|AAP95096.1| probable transcription regulator [Haemophilus ducreyi 35000HP] Length = 233 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+D R+ +++ E+A S + L+E + + E +S ++ Sbjct: 11 IGNRIRDEREKAGRSRNELADTLGLSLSTLQLWETNEREPQASMIITIAEELGVSPSYLL 70 Query: 92 DGEVID 97 GE + Sbjct: 71 TGETEE 76 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 29/79 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R+ G S+ E LG+ STL +E P+ I + ++ G Sbjct: 13 NRIRDEREKAGRSRNELADTLGLSLSTLQLWETNEREPQASMIITIAEELGVSPSYLLTG 72 Query: 176 DEVIVPKSIKRAKGNQSSK 194 + AK + + Sbjct: 73 ETEEGEVKTPVAKTQPTQQ 91 >gi|27377565|ref|NP_769094.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350709|dbj|BAC47719.1| bll2454 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + IR+ +Q ++A G S VNL E + + L L Y++ + Sbjct: 11 VGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRDL- 69 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLL-GMPNSTLSNY 146 + R+ N+ DP + + +R + +L G+ ++ Y Sbjct: 70 -ATADEDRFFAELNEIFSDPLFRQIDVPKQELR--------DLAELCPGVTHALQRLY 118 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + IR+ G+SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRDLATADED 75 >gi|239834287|ref|ZP_04682615.1| Repressor protein C [Ochrobactrum intermedium LMG 3301] gi|239822350|gb|EEQ93919.1| Repressor protein C [Ochrobactrum intermedium LMG 3301] Length = 264 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD R+K+ R A + +Q ++A + +SA++L E+G S+ + L + DW Sbjct: 38 KDFAFRLKNARVARDMSQAQLADLVGRDKSAISLLESGKRGASVDFVARLAKALNVREDW 97 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + E+ +R + Sbjct: 98 LAFEKGDMIGQEERAELERPADIFTPKLI 126 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 3/96 (3%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + K +D LK+ R + MSQ + L+G S +S E G+ Sbjct: 22 FARYNFTTICEKPIMDKDFAFR-LKNARVARDMSQAQLADLVGRDKSAISLLESGKRGAS 80 Query: 155 IKPARKIKQVTKKHLDWIYF--GDEVIVPKSIKRAK 188 + ++ + DW+ F GD + + + + Sbjct: 81 VDFVARLAKALNVREDWLAFEKGDMIGQEERAELER 116 >gi|258515642|ref|YP_003191864.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779347|gb|ACV63241.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 125 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 5/111 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ +RK+ N +E+A + L+E S + + + +S D++ Sbjct: 4 FGERLYQLRKSKNLKAEELAEFVGLKRRIIFLYEKNESKPSYDTLILFADFFNVSLDYLV 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI----GARLKSIRKDKGMSQIEFGKLLGM 138 G + + LD + L +R+ + + + Sbjct: 64 -GRSDNPQRILSALSITLDEFFSDDSAPEMLPEVRQIVNKVIKLPHEKIKI 113 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RL +RK K + E + +G+ + YE+ + P LD Sbjct: 1 MATFGERLYQLRKSKNLKAEELAEFVGLKRRIIFLYEKNESKPSYDTLILFADFFNVSLD 60 Query: 171 WIY 173 ++ Sbjct: 61 YLV 63 >gi|229039980|ref|ZP_04189744.1| Transcriptional regulator Xre [Bacillus cereus AH676] gi|228727388|gb|EEL78581.1| Transcriptional regulator Xre [Bacillus cereus AH676] Length = 82 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S S + + + +S + + Sbjct: 22 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIEELMP 81 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 RR E ++ G R+++ RK KG +Q F K LG+ S L E+G P Sbjct: 2 FTSRRNEKARGSNGMEAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPS 61 Query: 155 IKPARKIKQVTKKHLDWIY 173 ++ + ++ + Sbjct: 62 QDFVVEVAKALNVSIEELM 80 >gi|284030440|ref|YP_003380371.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809733|gb|ADB31572.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 508 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 20/180 (11%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D RK TQ ++A +SAVN E G + ++ + + Sbjct: 2 TDDYLSRIGNLIRDARKHRGWTQTQLADVLGTSQSAVNRIEKGHQNLTLEMLARIGEALD 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + G V R +D + K+ G++ LL +TL Sbjct: 62 SEIVSLGGGPVHLRVAGGRQLSGSIDVKSS--------KNAGVAL-LCASLLNKGRTTLR 112 Query: 145 NYEQGRTIPEIKPARKIKQVTK---KHLDWIY-FGD-EVIVPKSIKRAKGNQSSKKSKKD 199 + I+ ++ +V W+ GD E++ P+ + + + + + + Sbjct: 113 KVAR------IEEVNRLLEVLNSIGVKTTWLNDAGDLEIVPPEHLDLSAMDAEAARRTRS 166 >gi|169335543|ref|ZP_02862736.1| hypothetical protein ANASTE_01958 [Anaerofustis stercorihominis DSM 17244] gi|169258281|gb|EDS72247.1| hypothetical protein ANASTE_01958 [Anaerofustis stercorihominis DSM 17244] Length = 126 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G +IK R+ N TQ+ +A + S ++ ENG+ S+ + +S D Sbjct: 9 YKKLGGKIKKARQKENLTQETLAEILDLSASHLSHVENGLAKVSLPTIYSIAKILNVSLD 68 Query: 89 WIYDGEVIDRR 99 + E + Sbjct: 69 NLLGLEFENES 79 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + ++D +G ++K R+ + ++Q ++L + S LS+ E G + I Sbjct: 1 MVFIMKIDYKKLGGKIKKARQKENLTQETLAEILDLSASHLSHVENGLAKVSLPTIYSIA 60 Query: 163 QVTKKHLDWIY 173 ++ LD + Sbjct: 61 KILNVSLDNLL 71 >gi|169346786|ref|ZP_02865737.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] gi|169297068|gb|EDS79190.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] Length = 148 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 30 KDVGTRIKDIRKA------NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 K++G +IK +R TQ ++A S + E+G + S L L + Sbjct: 3 KELGLKIKQLRSDYSLKTGKKCTQADLAKMIGISRSYLGDIESGRTNPSDEILLKLSDAL 62 Query: 84 EISFDWIYDGE 94 + D + + + Sbjct: 63 GVDLDILIEYK 73 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 118 LKSIR------KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K +R K +Q + K++G+ S L + E GRT P + K+ LD Sbjct: 9 IKQLRSDYSLKTGKKCTQADLAKMIGISRSYLGDIESGRTNPSDEILLKLSDALGVDLDI 68 Query: 172 IY 173 + Sbjct: 69 LI 70 >gi|163791646|ref|ZP_02186042.1| hypothetical protein CAT7_03489 [Carnobacterium sp. AT7] gi|159873068|gb|EDP67176.1| hypothetical protein CAT7_03489 [Carnobacterium sp. AT7] Length = 66 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 29/64 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K R +Q ++A + +++ +EN + + + L Y++S D + Sbjct: 3 LGKKLKSSRVKKKYSQNDVAEQLHISRQSISKWENDISYPELDNLVKLSTYYQVSIDHLL 62 Query: 92 DGEV 95 + Sbjct: 63 KEKP 66 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +LKS R K SQ + + L + ++S +E + PE+ K+ + +D + Sbjct: 5 KKLKSSRVKKKYSQNDVAEQLHISRQSISKWENDISYPELDNLVKLSTYYQVSIDHLLKE 64 Query: 176 D 176 Sbjct: 65 K 65 >gi|111019821|ref|YP_702793.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110819351|gb|ABG94635.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 221 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 TP K + +++ +RKA+ + +MA ++ ++ EN S S+ L Sbjct: 27 TPTGPDLEKVIARQVRSLRKASGLSVGDMAAKVGISKAMLSKIENSQTSCSLSTLARLAA 86 Query: 82 EYEISFDWIYDGEVIDRRYEDVT 104 ++ ++ G R V Sbjct: 87 GLDVPVTSLFRGADTARDAVYVE 109 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 30/75 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I +++S+RK G+S + +G+ + LS E +T + ++ + + Sbjct: 36 VIARQVRSLRKASGLSVGDMAAKVGISKAMLSKIENSQTSCSLSTLARLAAGLDVPVTSL 95 Query: 173 YFGDEVIVPKSIKRA 187 + G + A Sbjct: 96 FRGADTARDAVYVEA 110 >gi|86134485|ref|ZP_01053067.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85821348|gb|EAQ42495.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 258 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK +R TQ+ +A + S ++ +E S +I + + ++I D I Sbjct: 4 LSKNIKHLRNLKKLTQEALAEELSVTRSRISSYEENRSSPTIEFLIDFSKYFKIPIDIII 63 Query: 92 DGEVIDRRYEDVTN 105 ++ Sbjct: 64 KNDLTKANDVSFIE 77 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +K +R K ++Q + L + S +S+YE+ R+ P I+ + K +D Sbjct: 1 MNILSKNIKHLRNLKKLTQEALAEELSVTRSRISSYEENRSSPTIEFLIDFSKYFKIPID 60 Query: 171 WIYFGD 176 I D Sbjct: 61 IIIKND 66 >gi|46908504|ref|YP_014893.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092432|ref|ZP_00230222.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47096032|ref|ZP_00233634.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|224499013|ref|ZP_03667362.1| DNA-binding protein [Listeria monocytogenes Finland 1988] gi|224503536|ref|ZP_03671843.1| DNA-binding protein [Listeria monocytogenes FSL R2-561] gi|258611370|ref|ZP_05231528.2| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258612011|ref|ZP_05243634.2| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|258612332|ref|ZP_05270022.2| DNA-binding protein [Listeria monocytogenes F6900] gi|290893622|ref|ZP_06556604.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|293596277|ref|ZP_05230092.2| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|293596748|ref|ZP_05264022.2| DNA-binding protein [Listeria monocytogenes J2818] gi|293597029|ref|ZP_05266697.2| DNA-binding protein [Listeria monocytogenes HPB2262] gi|300763918|ref|ZP_07073914.1| hypothetical protein LMHG_12171 [Listeria monocytogenes FSL N1-017] gi|46881776|gb|AAT05070.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|47015629|gb|EAL06560.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|47019209|gb|EAL09952.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|258599219|gb|EEW12544.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258607678|gb|EEW20286.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|258610937|gb|EEW23545.1| DNA-binding protein [Listeria monocytogenes F6900] gi|290556824|gb|EFD90356.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|293584899|gb|EFF96931.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|293592028|gb|EFG00363.1| DNA-binding protein [Listeria monocytogenes J2818] gi|293594334|gb|EFG02095.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|300515259|gb|EFK42310.1| hypothetical protein LMHG_12171 [Listeria monocytogenes FSL N1-017] gi|332312759|gb|EGJ25854.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 118 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK N TQK++A S ++ +EN I L + D++ Sbjct: 5 EFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFL 64 Query: 91 YDG 93 D Sbjct: 65 LDD 67 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G +L +RK ++Q + +G ST+S YE P I K+ ++ Sbjct: 1 MGVLEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTT 60 Query: 169 LDWIY 173 D++ Sbjct: 61 TDFLL 65 >gi|317496310|ref|ZP_07954668.1| hypothetical protein HMPREF0432_01272 [Gemella moribillum M424] gi|316913568|gb|EFV35056.1| hypothetical protein HMPREF0432_01272 [Gemella moribillum M424] Length = 64 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I RK N TQ E+A V+ E SI+ A L + + + D ++ Sbjct: 3 IPNKISFYRKKNGMTQDELASMLGVSRQFVSSIEGAKKIPSIKLAFQLSDIFGVPVDNLF 62 Query: 92 DG 93 Sbjct: 63 YR 64 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I ++ RK GM+Q E +LG+ +S+ E + IP IK A ++ + +D Sbjct: 1 MSIPNKISFYRKKNGMTQDELASMLGVSRQFVSSIEGAKKIPSIKLAFQLSDIFGVPVDN 60 Query: 172 IYF 174 +++ Sbjct: 61 LFY 63 >gi|299136728|ref|ZP_07029911.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298601243|gb|EFI57398.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 258 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 37/104 (35%), Gaps = 5/104 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++Q +++G ++ R+ K+Q ++++ + ++ E+G S L L + Sbjct: 8 MQQSEQELGDLLRYWRRQRGKSQLDLSLDTGVSQRHISFVESGRSVPSRELLLSLAKTLD 67 Query: 85 ISFDW----IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + + E + + L +R+ Sbjct: 68 VPLREQNVLLLASGYAPVYLESTWDAPEMAVVTRVIDL-MLRQH 110 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R+ +G SQ++ G+ +S E GR++P + + + L Sbjct: 19 LRYWRRQRGKSQLDLSLDTGVSQRHISFVESGRSVPSRELLLSLAKTLDVPL 70 >gi|296330586|ref|ZP_06873064.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674634|ref|YP_003866306.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152268|gb|EFG93139.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412878|gb|ADM37997.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 132 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ IRK KT E+A S ++ E + SI+ + + + ++ Sbjct: 5 KMGEAIRRIRKEKKKTLDEVAEAVGITHSYLSRIERNLQQPSIQVIEKIADYLGVHKSYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E ++Y + + LK + Sbjct: 65 FFDEESLKKYSEPEKQLLAQKSITIDDLKKL 95 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G ++ IRK+K + E + +G+ +S LS E+ P I+ KI H Sbjct: 1 MGNMKMGEAIRRIRKEKKKTLDEVAEAVGITHSYLSRIERNLQQPSIQVIEKIADYLGVH 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +++F +E + S + + D K N Sbjct: 61 KSYLFFDEESLKKYSEPEKQLLAQKSITIDDLKKLN 96 >gi|325677790|ref|ZP_08157432.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324110344|gb|EGC04518.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 197 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ R+ T+ E A + + +E+G + +++ + + + Sbjct: 137 IGRKIQKYREERGLTRNEFAEMLGCVMPTIQRWESGTRVPDVTMLMHIAKVLGVGVEDLI 196 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 31/56 (55%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R+++G+++ EF ++LG T+ +E G +P++ I +V ++ + Sbjct: 141 IQKYREERGLTRNEFAEMLGCVMPTIQRWESGTRVPDVTMLMHIAKVLGVGVEDLI 196 >gi|262043413|ref|ZP_06016538.1| HTH-type transcriptional regulator RdgA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039239|gb|EEW40385.1| HTH-type transcriptional regulator RdgA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 70 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + TR+K+ RK N TQ +A + A+N E+G+ S RY L + + +W+ Sbjct: 3 LATRVKERRKELNMTQVALAELTGVSQQAINRIESGVIS-RPRYLLEISAALQCDPNWLL 61 Query: 92 DGEVIDRR 99 G+ D + Sbjct: 62 HGQPTDNK 69 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K RK+ M+Q+ +L G+ ++ E G + +I + +W Sbjct: 1 MTLATRVKERRKELNMTQVALAELTGVSQQAINRIESGVIS-RPRYLLEISAALQCDPNW 59 Query: 172 IYFG 175 + G Sbjct: 60 LLHG 63 >gi|229003088|ref|ZP_04160940.1| Transcriptional regulator Xre [Bacillus mycoides Rock1-4] gi|228758171|gb|EEM07364.1| Transcriptional regulator Xre [Bacillus mycoides Rock1-4] Length = 67 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G + S + + + IS D + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRTPSQDFVVEVAKTLNISIDELMP 66 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ RK KG +Q F K LG+ S L E+G P ++ + +D + Sbjct: 10 IRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRTPSQDFVVEVAKTLNISIDELM 65 >gi|163796042|ref|ZP_02190005.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] gi|159178797|gb|EDP63335.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] Length = 526 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 13/139 (9%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI++ R+ TQ +A S +NL E + + + ++ + + Sbjct: 7 GYRIRERRRQLGLTQAGVAKSVGISPSYLNLIEANKRAIAGSILRRITELLDLDPETLTG 66 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 + L+ A L+ + G+ Q G+L+G + ++ Sbjct: 67 RTEQRMVDD-------LEELAAEPMLRDL----GLDQTSTGELIGRHPTWVNALLTCWRA 115 Query: 153 PE--IKPARKIKQVTKKHL 169 + A + + Sbjct: 116 YRDQAQTASALSDRLNQDP 134 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 31/78 (39%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G R++ R+ G++Q K +G+ S L+ E + R+I ++ Sbjct: 1 MARQLTGYRIRERRRQLGLTQAGVAKSVGISPSYLNLIEANKRAIAGSILRRITELLDLD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + + E + ++ Sbjct: 61 PETLTGRTEQRMVDDLEE 78 >gi|218532810|ref|YP_002423626.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|254563828|ref|YP_003070923.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|218525113|gb|ACK85698.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] gi|254271106|emb|CAX27113.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 209 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RKA N + E+A + +S ++ E + ++ L ++S + + Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85 Query: 91 YDGEVIDRRYEDVT 104 + E + Sbjct: 86 LATSDEEPFIERFS 99 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-F 174 ++ +RK +S E + G+ S +S E+ T P + ++ Q ++ + Sbjct: 29 KTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVLAT 88 Query: 175 GDEVIVPKSIKRAKGNQ 191 DE + RA + Sbjct: 89 SDEEPFIERFSRADTPR 105 >gi|87198232|ref|YP_495489.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87133913|gb|ABD24655.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 63 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N +Q ++A +VN E G S+ A + + + ++ + I++ Sbjct: 3 NRLKVLRAERNWSQADLAERLEVSRQSVNAIETGKYDPSLPLAFRIADLFGLAIEEIFER 62 Query: 94 E 94 + Sbjct: 63 D 63 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ + + L + +++ E G+ P + A +I + ++ I+ Sbjct: 1 MKNRLKVLRAERNWSQADLAERLEVSRQSVNAIETGKYDPSLPLAFRIADLFGLAIEEIF 60 Query: 174 FGD 176 D Sbjct: 61 ERD 63 >gi|39996520|ref|NP_952471.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39983401|gb|AAR34794.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|307634843|gb|ADI84259.2| helix-turn-helix DNA-binding protein, putative [Geobacter sulfurreducens KN400] Length = 142 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGA--NQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +K +R TQK++A + + E G S++ + + + Sbjct: 4 NIGHALKRLRSERGLTQKDLAALVSGGLDYTYIGKIERGEQLPSLKILIGISEALGVPVG 63 Query: 89 WIYDGEV 95 + GE Sbjct: 64 IFFGGES 70 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLL--GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R ++G++Q + L+ G+ + + E+G +P +K I + + + Sbjct: 7 HALKRLRSERGLTQKDLAALVSGGLDYTYIGKIERGEQLPSLKILIGISEALGVPVGIFF 66 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKK 198 G+ ++ + ++ + K+ Sbjct: 67 GGESAAEAARLRVVQAGKAGELEKE 91 >gi|167038622|ref|YP_001666200.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117013|ref|YP_004187172.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857456|gb|ABY95864.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930104|gb|ADV80789.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 74 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 32/61 (52%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 + ++RK+ TQ++++ +S++ ++E G S+ A + + + + I+ G++ Sbjct: 4 LAELRKSRRLTQEQLSKLLGISKSSIAMYETGQRVPSLSRAKKIAKFFNVPVEKIFFGDI 63 Query: 96 I 96 Sbjct: 64 N 64 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 37/59 (62%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L +RK + ++Q + KLLG+ S+++ YE G+ +P + A+KI + ++ I+FGD Sbjct: 4 LAELRKSRRLTQEQLSKLLGISKSSIAMYETGQRVPSLSRAKKIAKFFNVPVEKIFFGD 62 >gi|325845858|ref|ZP_08169056.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481764|gb|EGC84796.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 185 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G IK+ R + N + K++A + S ++ E+G + S+ + ++ + Sbjct: 3 KLGKNIKNFRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQHLKVPMFTL 62 Query: 91 YDGEVIDRRYEDVTNKK 107 + E +DR N + Sbjct: 63 FIEEDVDRPILVKKNDR 79 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K+ R + +S + + + + S LS E G+ P + + I Q K + ++ Sbjct: 6 KNIKNFRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQHLKVPMFTLFIE 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 ++V P +K+ + K + K Sbjct: 66 EDVDRPILVKKNDRIHITNKGEDSK 90 >gi|307127275|ref|YP_003879306.1| helix-turn-helix domain-containing protein [Streptococcus pneumoniae 670-6B] gi|295980949|emb|CBJ57197.1| putative transcriptional regulator [Streptococcus pneumoniae] gi|306484337|gb|ADM91206.1| helix-turn-helix domain protein [Streptococcus pneumoniae 670-6B] Length = 158 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|229181840|ref|ZP_04309148.1| Transcriptional regulator [Bacillus cereus 172560W] gi|228601638|gb|EEK59151.1| Transcriptional regulator [Bacillus cereus 172560W] Length = 116 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 2/108 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ RIK IR + Q++ + + V+ FENG S + + + +++ Sbjct: 2 DMKDRIKQIRLEHKMNQEQFGKELDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI-EFGKLLG 137 GE ++D +K + A L ++D + Q+ + L Sbjct: 62 -YGENNVANHDDNKYEKFKEIMAWLEPLPKDKEDMALDQMLAIAQALN 108 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K IR + M+Q +FGK L + T+S +E G+ P + KI + +++ Sbjct: 1 MDMKDRIKQIRLEHKMNQEQFGKELDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 +Y + V K K Sbjct: 61 LYGENNVANHDDNKYEK 77 >gi|255505268|ref|ZP_05345130.3| conserved domain protein [Bryantella formatexigens DSM 14469] gi|255269040|gb|EET62245.1| conserved domain protein [Bryantella formatexigens DSM 14469] Length = 86 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D Y +++ R K M+Q E L+G+ T+ E+ R P + A I +V + Sbjct: 16 DRYKFESKIHIYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSMLLAYSIAKVFDVTI 75 Query: 170 DWIYFGDEV 178 + ++ EV Sbjct: 76 EDLFDFSEV 84 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++I R TQ+E+A + E + S+ A + ++++ + ++D Sbjct: 22 SKIHIYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSMLLAYSIAKVFDVTIEDLFD 80 >gi|170748375|ref|YP_001754635.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654897|gb|ACB23952.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 208 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G I+ +RKA N + E+A + +S ++ E + ++ L ++S + Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIE 83 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-F 174 ++ +RK +S E + G+ S +S E+ T P + ++ Q ++ + Sbjct: 29 KTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVLAA 88 Query: 175 GDEVIVPKSIKRAK 188 GDE + RA Sbjct: 89 GDEEPFIEKTSRAD 102 >gi|153854167|ref|ZP_01995475.1| hypothetical protein DORLON_01466 [Dorea longicatena DSM 13814] gi|149753216|gb|EDM63147.1| hypothetical protein DORLON_01466 [Dorea longicatena DSM 13814] Length = 119 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 36/79 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +R+ N+ TQK +A N S + +E S L + +S D++ D Sbjct: 5 EKLKKLREENHYTQKYVAKHLNVARSTIAGYETKNRQPSHEKLTILAELFHVSVDYLLDD 64 Query: 94 EVIDRRYEDVTNKKRLDPY 112 ++ + D + ++ + Y Sbjct: 65 DISEITLSDKSTAQKSEHY 83 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK +R++ +Q K L + ST++ YE P + + ++ +D+ Sbjct: 1 MPFSEKLKKLREENHYTQKYVAKHLNVARSTIAGYETKNRQPSHEKLTILAELFHVSVDY 60 Query: 172 IYFGD 176 + D Sbjct: 61 LLDDD 65 >gi|332638410|ref|ZP_08417273.1| helix-turn-helix domain-containing protein [Weissella cibaria KACC 11862] Length = 182 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 31/75 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTR+ +R+ T +E++ +++N E S SI + + + ++ + Sbjct: 6 VGTRLLTLRQQRQLTLQEVSTLTGVSTASLNNIERHTTSPSIDTLWKISSGLAVPINYFF 65 Query: 92 DGEVIDRRYEDVTNK 106 + +D + Sbjct: 66 ATDPVDFELARPADF 80 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 34/73 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RL ++R+ + ++ E L G+ ++L+N E+ T P I KI Sbjct: 1 MITEIVGTRLLTLRQQRQLTLQEVSTLTGVSTASLNNIERHTTSPSIDTLWKISSGLAVP 60 Query: 169 LDWIYFGDEVIVP 181 +++ + D V Sbjct: 61 INYFFATDPVDFE 73 >gi|319794332|ref|YP_004155972.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315596795|gb|ADU37861.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 199 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 24/157 (15%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + TR+ +R+A + E+A + ++ ++ E S + L +S + Sbjct: 19 IATRLLALRQAKGLSLAELAELSGVSKAMISKVERAQSSPTAVLLGRLAAGLGVSLAQLL 78 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL-----------LGMPN 140 E + + K + + G + + + + +P Sbjct: 79 TEEKEKEAPQRLRTKAMQEVWRDPE--------AGYLRRQVAERGATGSGVELVEVELPR 130 Query: 141 STLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 S Y + P + ++ + +GDE Sbjct: 131 SAQVGYPRWSGKPYRQCLWMLEGALRVD-----YGDE 162 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 1/104 (0%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + LD L ++R+ KG+S E +L G+ + +S E+ ++ P Sbjct: 1 MRNESPPPSEAPGHLDALIATRLL-ALRQAKGLSLAELAELSGVSKAMISKVERAQSSPT 59 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ L + ++ R K Q + + Sbjct: 60 AVLLGRLAAGLGVSLAQLLTEEKEKEAPQRLRTKAMQEVWRDPE 103 >gi|297184582|gb|ADI20694.1| predicted transcriptional regulators [uncultured alpha proteobacterium EF100_94H03] Length = 204 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E+ Q D+G RI+++R + + E A + S++ E S + L + Sbjct: 17 EVPQPPLDLGNRIRELRSEHGWSLDEAAAQTSLSRSSLFKIEKNRMSPTFDALRKLAEGF 76 Query: 84 EISFDWIYDGEVI 96 ++ + + Sbjct: 77 GLAMAELVGQQTN 89 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R + G S E + S+L E+ R P RK+ + + + Sbjct: 27 NRIRELRSEHGWSLDEAAAQTSLSRSSLFKIEKNRMSPTFDALRKLAEGFGLAMAELV 84 >gi|296395417|ref|YP_003660301.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296182564|gb|ADG99470.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 148 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 18/125 (14%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 R+ T+ ++A S + +E+G S +I + Sbjct: 16 RAREKRRMTRADLARLTGLSTSTIQKWESGATSPNIETLAKAAAALGVPM---------- 65 Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 ++ + L R+ G+S+ + + G+ L+ E+G + + Sbjct: 66 --------RRIIKVPTKRRTLADWRRLSGLSRTKLARAAGLTTPALAALERGESQLTDEK 117 Query: 158 ARKIK 162 A +I Sbjct: 118 ADRIA 122 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L R+ + M++ + +L G+ ST+ +E G T P I+ K + Sbjct: 14 LVRAREKRRMTRADLARLTGLSTSTIQKWESGATSPNIETLAKAAAALGVPM 65 >gi|229080286|ref|ZP_04212811.1| HTH-type transcriptional regulator ansR [Bacillus cereus Rock4-2] gi|228702955|gb|EEL55416.1| HTH-type transcriptional regulator ansR [Bacillus cereus Rock4-2] Length = 128 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 6 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 63 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D Sbjct: 1 MRRMLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVD 60 Query: 171 WIY 173 +I Sbjct: 61 YIL 63 >gi|297588232|ref|ZP_06946875.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297573605|gb|EFH92326.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 179 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ +R TQ+E+A ++ + ++ E + S S+ L N Sbjct: 2 EIGEKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNDLLNALGTDMATF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + + + ++ + + + Sbjct: 62 FMDKPSVKEIFTKDDYQSSEDLSMNSTITWL 92 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++S+R G++Q E + + +S E+ T P + + + Sbjct: 1 MEIGEKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNDLLNALGTDMAT 60 Query: 172 IYFGDEVIVPKSIKR 186 + + K Sbjct: 61 FFMDKPSVKEIFTKD 75 >gi|254823632|ref|ZP_05228633.1| predicted protein [Listeria monocytogenes FSL J1-194] gi|293592855|gb|EFG00616.1| predicted protein [Listeria monocytogenes FSL J1-194] Length = 237 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 36/81 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AI +LK RK K +Q + +G+ + +E+ +IP +K + I +V +D+ Sbjct: 1 MAIHMKLKEERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKSICRVFDITMDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + + +K K + Sbjct: 61 LIKDEVDTKDNQLKYMKLGKD 81 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K+ RK TQ +A V +E +++ + ++I+ D++ Sbjct: 3 IHMKLKEERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKSICRVFDITMDYLI 62 Query: 92 DGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 E ++ K LD + IRK +S+ E Sbjct: 63 KDEVDTKDNQLKYMKLGKDILDLANERYPIDFIRKYHIISKEEI 106 >gi|225076898|ref|ZP_03720097.1| hypothetical protein NEIFLAOT_01949 [Neisseria flavescens NRL30031/H210] gi|224951784|gb|EEG32993.1| hypothetical protein NEIFLAOT_01949 [Neisseria flavescens NRL30031/H210] Length = 84 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 32/83 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K G ++ +R+ + +Q+ +A AN + + + E G + ++ + L + + Sbjct: 2 KSEILKQFGKHVRHLRQLQDLSQETLAEKANMHRTYIGMIERGERNPALLNLIRLASALD 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKK 107 IS + + Sbjct: 62 ISLPELLTFKDYVNDGNCDNESN 84 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 25/68 (36%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G ++ +R+ + +SQ + M + + E+G P + ++ L + Sbjct: 9 FGKHVRHLRQLQDLSQETLAEKANMHRTYIGMIERGERNPALLNLIRLASALDISLPELL 68 Query: 174 FGDEVIVP 181 + + Sbjct: 69 TFKDYVND 76 >gi|221231799|ref|YP_002510951.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] gi|220674259|emb|CAR68796.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] Length = 158 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 ++++ P Sbjct: 61 VGENKMLNP 69 >gi|328475511|gb|EGF46270.1| transcription regulator [Listeria monocytogenes 220] Length = 180 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRR-YEDVTNKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYRELEHTFFEDEEKGYRIKWL 93 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|229085629|ref|ZP_04217861.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-44] gi|228697709|gb|EEL50462.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-44] Length = 422 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RI+ IR TQ E+ G + ++ ENG S + + + + +D++ Sbjct: 2 QIGERIRQIRIHKGMTQGELVSGI-CSVAYLSRIENGQIKPSSSFLKKVSQKLNVDWDFL 60 Query: 91 YDGEVI 96 DG+ Sbjct: 61 IDGKNE 66 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R++ IR KGM+Q E + G+ + LS E G+ P +K+ Q D Sbjct: 1 MQIGERIRQIRIHKGMTQGEL--VSGICSVAYLSRIENGQIKPSSSFLKKVSQKLNVDWD 58 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ G + +I + ++ KKDK+ + Sbjct: 59 FLIDGKNEGIESNILK-----ICERYKKDKRIA 86 >gi|257053234|ref|YP_003131067.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256691997|gb|ACV12334.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 1412 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 17/122 (13%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++R+A TQ + + +E G + S + + +E W+ Sbjct: 681 GDTLREVREALALTQTD----CGVPRTTYQHYERGDRNPSRGSLRAVVDAFEKRLAWL-- 734 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 + D + +R + +SQ + + + +S YE+ Sbjct: 735 -------KDQREGLAAEDW----ETIVELRDELSISQQSLADGMDVTQTAISYYERNEVA 783 Query: 153 PE 154 P+ Sbjct: 784 PD 785 Score = 42.6 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + N R G L+ +R+ ++Q + G+P +T +YE+G P Sbjct: 663 ESYEGTAGNTNRDVVPVSGDTLREVREALALTQTDC----GVPRTTYQHYERGDRNPSRG 718 Query: 157 PARKIKQVTKKHLDWI 172 R + +K L W+ Sbjct: 719 SLRAVVDAFEKRLAWL 734 >gi|291326325|ref|ZP_06124059.2| peptidase, S24 family [Providencia rettgeri DSM 1131] gi|291314825|gb|EFE55278.1| peptidase, S24 family [Providencia rettgeri DSM 1131] Length = 229 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 2/91 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + RIK R A TQ E+A +V +E + + + + Sbjct: 1 MKTMHERIKQARLAKKMTQAELAQQLGVTPQSVQQWET-STEPRKNRVMKIAEILSVDAE 59 Query: 89 WIYDGEVIDRRYEDVT-NKKRLDPYAIGARL 118 W+ G + +D + L Sbjct: 60 WLLFGTAKKDGVPAKDFKSREVDTWDSKTPL 90 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+K R K M+Q E + LG+ ++ +E T P KI ++ + Sbjct: 1 MKTMHERIKQARLAKKMTQAELAQQLGVTPQSVQQWETS-TEPRKNRVMKIAEILSVDAE 59 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 W+ FG K AK +S + D K+ Sbjct: 60 WLLFG---TAKKDGVPAKDFKSREVDTWDSKTP 89 >gi|188493485|ref|ZP_03000755.1| helix-turn-helix domain protein [Escherichia coli 53638] gi|188488684|gb|EDU63787.1| helix-turn-helix domain protein [Escherichia coli 53638] Length = 167 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 1/106 (0%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++ R+A T E+A + E + +E+G +I + L N Sbjct: 61 LQNKNSAINNRLRTQREACGLTTAELARLLDLDEEVIIQWESGEYEPTISMLIPLANILG 120 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQ 129 W+ G V ++ + L + K Q Sbjct: 121 CDPMWLLTGAVTPPVQPKSEEQQHHNASQQVCSLSREALLRKNQYQ 166 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI RL++ R+ G++ E +LL + + +E G P I + + W+ Sbjct: 67 AINNRLRTQREACGLTTAELARLLDLDEEVIIQWESGEYEPTISMLIPLANILGCDPMWL 126 Query: 173 YFG--DEVIVPKSIKRAKGNQSSK 194 G + PKS ++ N S + Sbjct: 127 LTGAVTPPVQPKSEEQQHHNASQQ 150 >gi|171742425|ref|ZP_02918232.1| hypothetical protein BIFDEN_01536 [Bifidobacterium dentium ATCC 27678] gi|283456489|ref|YP_003361053.1| XRE family transcriptional regulator [Bifidobacterium dentium Bd1] gi|171278039|gb|EDT45700.1| hypothetical protein BIFDEN_01536 [Bifidobacterium dentium ATCC 27678] gi|283103123|gb|ADB10229.1| XRE family transcriptional regulator [Bifidobacterium dentium Bd1] Length = 143 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 52/145 (35%), Gaps = 17/145 (11%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS---IRYALYLRNEYEISFDWIYD 92 +++ R+ T ++ + ++ E + A + + + +Y Sbjct: 8 LRERRERCGLTLLQLDALTGIAYTRLSTLECNASEARNMYLGTARRIADALHCNVLDLYP 67 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 E R A L+ IR+++ ++Q L G+P +S +E G Sbjct: 68 DEDAWRGGVS----------AGVTGLRRIRRERHLTQRMLSALTGIPQPNISWFETGYRP 117 Query: 153 PE---IKPARKIKQVTKK-HLDWIY 173 + AR++ + + +D++ Sbjct: 118 VSQMYLDTARRLSEALQCDPVDFLI 142 >gi|166032930|ref|ZP_02235759.1| hypothetical protein DORFOR_02651 [Dorea formicigenerans ATCC 27755] gi|167766611|ref|ZP_02438664.1| hypothetical protein CLOSS21_01117 [Clostridium sp. SS2/1] gi|218132240|ref|ZP_03461044.1| hypothetical protein BACPEC_00097 [Bacteroides pectinophilus ATCC 43243] gi|225026928|ref|ZP_03716120.1| hypothetical protein EUBHAL_01184 [Eubacterium hallii DSM 3353] gi|323487598|ref|ZP_08092888.1| hypothetical protein HMPREF9474_04639 [Clostridium symbiosum WAL-14163] gi|166027287|gb|EDR46044.1| hypothetical protein DORFOR_02651 [Dorea formicigenerans ATCC 27755] gi|167711734|gb|EDS22313.1| hypothetical protein CLOSS21_01117 [Clostridium sp. SS2/1] gi|217992849|gb|EEC58849.1| hypothetical protein BACPEC_00097 [Bacteroides pectinophilus ATCC 43243] gi|224955739|gb|EEG36948.1| hypothetical protein EUBHAL_01184 [Eubacterium hallii DSM 3353] gi|291526845|emb|CBK92431.1| Helix-turn-helix [Eubacterium rectale M104/1] gi|291535072|emb|CBL08184.1| Helix-turn-helix [Roseburia intestinalis M50/1] gi|291558633|emb|CBL37433.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|323399097|gb|EGA91505.1| hypothetical protein HMPREF9474_04639 [Clostridium symbiosum WAL-14163] Length = 209 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + K+ A+G LK + Sbjct: 64 VSIEWL-RGETDEYETDITDKKELQIRDAMGDILKQL 99 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL-RGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 DEYETDITDKKE 85 >gi|153933321|ref|YP_001384546.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935529|ref|YP_001388062.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|152929365|gb|ABS34865.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931443|gb|ABS36942.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 78 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 39/76 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R++ G++Q + G+L+G+ ++ E + P I A I +V ++ ++ Sbjct: 1 MKNKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVF 60 Query: 174 FGDEVIVPKSIKRAKG 189 +E ++++G Sbjct: 61 LFEESERKSRSEKSRG 76 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 29/73 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R+ TQ+++ A+N E SI A + + + + ++ Sbjct: 3 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 94 EVIDRRYEDVTNK 106 E +R+ ++ Sbjct: 63 EESERKSRSEKSR 75 >gi|322385349|ref|ZP_08058994.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270608|gb|EFX53523.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 158 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|293607057|ref|ZP_06689400.1| DNA-binding/shikimate kinase domain protein [Achromobacter piechaudii ATCC 43553] gi|292814547|gb|EFF73685.1| DNA-binding/shikimate kinase domain protein [Achromobacter piechaudii ATCC 43553] Length = 302 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 12/92 (13%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 P + +G R++ +R T+K ++ E + E+G+ + SI L Sbjct: 7 AAPSEPRREAFLVALGERVRRLRAIRGMTRKSLSQVTGVSERHLANLEHGVGNASILVLL 66 Query: 78 YLRNEYEI------------SFDWIYDGEVID 97 + + S DW+ E++ Sbjct: 67 QIARAFNCALAELVGDVTTESPDWLLIRELLS 98 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 12/76 (15%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK----- 167 A+G R++ +R +GM++ ++ G+ L+N E G I +I + Sbjct: 20 ALGERVRRLRAIRGMTRKSLSQVTGVSERHLANLEHGVGNASILVLLQIARAFNCALAEL 79 Query: 168 -------HLDWIYFGD 176 DW+ + Sbjct: 80 VGDVTTESPDWLLIRE 95 >gi|282881086|ref|ZP_06289773.1| cupin domain protein [Prevotella timonensis CRIS 5C-B1] gi|281304890|gb|EFA96963.1| cupin domain protein [Prevotella timonensis CRIS 5C-B1] Length = 184 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R+K +R+ N +E+A N E G S+ + Y Sbjct: 1 MEESIKQIGQRLKGLREVLNIPAEEIAQLCNISTEHYKKIEAGEADPSLYRLTRISKHYG 60 Query: 85 ISFDWIYDGEVIDRRYE 101 I+ D + GE Sbjct: 61 IALDVLLFGEEPRMSSY 77 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 32/86 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ + E +L + E G P + +I + LD + FG Sbjct: 10 QRLKGLREVLNIPAEEIAQLCNISTEHYKKIEAGEADPSLYRLTRISKHYGIALDVLLFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + KG + ++ K Sbjct: 70 EEPRMSSYFITRKGQGMTVDRHQEYK 95 >gi|251777900|ref|ZP_04820820.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082215|gb|EES48105.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 92 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K++R Q+++A N S +E I + + Y +S D++ Sbjct: 2 LGERLKELRDERELKQEDVAAKLNIGRSTYANYETERAEPGIAVLKDIASFYNVSIDFL 60 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RLK +R ++ + Q + L + ST +NYE R P I + I +D++ Sbjct: 1 MLGERLKELRDERELKQEDVAAKLNIGRSTYANYETERAEPGIAVLKDIASFYNVSIDFL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + P + K + K +K Sbjct: 61 CGYTNIREPYIKDKRKSEYINDCLKTYEK 89 >gi|228936982|ref|ZP_04099724.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822697|gb|EEM68587.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 114 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 23/73 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K R + TQ E S ++ E + + + ++IS D + Sbjct: 4 FGENLKKFRNNRSLTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFDISVDTLM 63 Query: 92 DGEVIDRRYEDVT 104 + + Sbjct: 64 GRKFTKSERQLED 76 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK R ++ ++Q EFG + + S +SN E P++ +I +D Sbjct: 1 MNTFGENLKKFRNNRSLTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFDISVD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + + ++ Sbjct: 61 TLMGRKFTKSERQLED 76 >gi|182418649|ref|ZP_02949926.1| DNA-binding protein [Clostridium butyricum 5521] gi|237668530|ref|ZP_04528514.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377511|gb|EDT75065.1| DNA-binding protein [Clostridium butyricum 5521] gi|237656878|gb|EEP54434.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 179 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +R TQ+E+A + ++ EN + S SI + + + Sbjct: 2 QIGEKIRILRMEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLPDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + D + L + Sbjct: 62 FSDTKEEKVTYTKDDMFEKDDDDLKYSLMWL 92 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R +K ++Q E + +S E T P I I ++ +L Sbjct: 1 MQIGEKIRILRMEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLPD 60 Query: 172 IYFGDEVIVPKSIK 185 + + K Sbjct: 61 FFSDTKEEKVTYTK 74 >gi|170754718|ref|YP_001779994.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119930|gb|ACA43766.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 181 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I+++RK N T K+++ S ++ EN S +I + + + + Sbjct: 4 EIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYF 63 Query: 91 YD 92 + Sbjct: 64 FK 65 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +++++RK+K ++ + + G+ S LS E + I +KI + + Sbjct: 3 NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITY 62 Query: 172 IYFGDEV--IVPKSIKRAKGNQSSKKSKKDKKSSN 204 + E+ + K +R SK K S N Sbjct: 63 FFKSPELHKFLVKKQEREVFELEGSSSKFIKLSGN 97 >gi|325859811|ref|ZP_08172941.1| cupin domain protein [Prevotella denticola CRIS 18C-A] gi|327312760|ref|YP_004328197.1| cupin domain-containing protein [Prevotella denticola F0289] gi|325482737|gb|EGC85740.1| cupin domain protein [Prevotella denticola CRIS 18C-A] gi|326945558|gb|AEA21443.1| cupin domain protein [Prevotella denticola F0289] Length = 184 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R+K +R++ + + +EMA E E G ++ L +Y Sbjct: 1 MDEALKQIGERLKGLRESLDVSVQEMAETCGVTEEKYLKMEGGESDLAVSRLYKLSRKYG 60 Query: 85 ISFDWIYDGEVIDR-RYEDVTNKKRL 109 +S D + GE Y N K + Sbjct: 61 VSLDVLMFGEEPRMGAYFLTRNGKGM 86 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ +S E + G+ E G + + K+ + LD + FG Sbjct: 10 ERLKGLRESLDVSVQEMAETCGVTEEKYLKMEGGESDLAVSRLYKLSRKYGVSLDVLMFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + G S + ++ K Sbjct: 70 EEPRMGAYFLTRNGKGMSVERREAYK 95 >gi|310644824|ref|YP_003949583.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309249775|gb|ADO59342.1| Transcriptional regulator [Paenibacillus polymyxa SC2] Length = 114 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG RI+++RKA TQ+++A A S + E G + S+ + ++ Sbjct: 5 ESVGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALKVPPFE 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 ++ + R + + L Sbjct: 65 LFQFDETTDRKQIINELMLL 84 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK KG +Q + + G+ S + E+G ++ KI K ++ Sbjct: 9 NRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALKVPPFELFQF 68 Query: 176 DEVIVPKSI 184 DE K I Sbjct: 69 DETTDRKQI 77 >gi|300783935|ref|YP_003764226.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793449|gb|ADJ43824.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 74 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 115 GARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+++R G M+Q + +G+ T+ EQGR P ++ A +I V L+ ++ Sbjct: 8 TNSLRALRFAHGQMTQADLATRIGVTRQTVIAIEQGRYSPSLEMAFQIAHVFGVPLEEVF 67 Query: 174 FGDEVI 179 E Sbjct: 68 QYPEET 73 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 36 IKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ +R A+ TQ ++A V E G S S+ A + + + + + ++ Sbjct: 11 LRALRFAHGQMTQADLATRIGVTRQTVIAIEQGRYSPSLEMAFQIAHVFGVPLEEVFQ 68 >gi|288962158|ref|YP_003452453.1| transcriptional regulator [Azospirillum sp. B510] gi|288914424|dbj|BAI75909.1| transcriptional regulator [Azospirillum sp. B510] Length = 483 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 2/88 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ TQ +MA S +NL E+ ++ L L + + Sbjct: 10 LGPKVRRLRRDQGLTQAQMADQLGISPSYLNLIEHNQRPVTVPLLLKLGQRFGVDLQ--A 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 E + R + DP G+ +K Sbjct: 68 FAEDEESRLVAGLREVFADPLFDGSDIK 95 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 106 KKRLDPYAI-GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 +D A+ G +++ +R+D+G++Q + LG+ S L+ E + + K+ Q Sbjct: 1 MASMDKKAMLGPKVRRLRRDQGLTQAQMADQLGISPSYLNLIEHNQRPVTVPLLLKLGQR 60 Query: 165 TKKHLDWIYFGDEV 178 L +E Sbjct: 61 FGVDLQAFAEDEES 74 >gi|225851327|ref|YP_002731561.1| transcriptional regulator, xre family [Persephonella marina EX-H1] gi|225645748|gb|ACO03934.1| transcriptional regulator, xre family [Persephonella marina EX-H1] Length = 159 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 20/172 (11%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++G RIK +RK +Q+E A + AV +E + + + ++ D Sbjct: 1 MENIGQRIKQLRKMLGLSQREFAEKIGKSLRAVQNWEYEQRTPDESTLRLISQTFGVNLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 W+ GE + +K + +++I + S + + Sbjct: 61 WLKTGEGEM--WVKDQDKSGVSIEPFEKLIQAI------------NRIEKIPSVVEKILK 106 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 R I++ T L I E+ I K +Q K K D+ Sbjct: 107 DYYEK-----RDIEEFTNI-LSEIIKEIEITSKVKIDNVKNSQIIKAEKIDE 152 >gi|226322382|ref|ZP_03797900.1| hypothetical protein COPCOM_00150 [Coprococcus comes ATCC 27758] gi|225209240|gb|EEG91594.1| hypothetical protein COPCOM_00150 [Coprococcus comes ATCC 27758] gi|295108685|emb|CBL22638.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 209 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + K+ A+G LK + Sbjct: 64 VSIEWL-RGETNEYETDITDKKELQIRDAMGDILKQL 99 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL-RGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 NEYETDITDKKE 85 >gi|2897106|gb|AAC03457.1| repressor [Streptococcus phage TP-J34] Length = 121 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEI 85 K G+RI+ +R + +Q E+A +S ++ +E+G + + L Sbjct: 2 DLNKQRGSRIESLRASKGISQLELAKMLGYKSDSTISKWESGASIPTGTKIVKLAQALGT 61 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + D+I G+ + +D A + Sbjct: 62 TTDYILFGDNSENNDGQQIISTDIDEIIENAMM 94 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +R++S+R KG+SQ+E K+LG +ST+S +E G +IP K+ Q D+I F Sbjct: 9 SRIESLRASKGISQLELAKMLGYKSDSTISKWESGASIPTGTKIVKLAQALGTTTDYILF 68 Query: 175 GD 176 GD Sbjct: 69 GD 70 >gi|25011369|ref|NP_735764.1| hypothetical protein gbs1327 [Streptococcus agalactiae NEM316] gi|24412907|emb|CAD46986.1| Unknown [Streptococcus agalactiae NEM316] Length = 73 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ ++ TQ+ +A + + E G + + L Y +S D+I Sbjct: 3 QRIRDLREDHDFTQRYVAEVLSFSHTNYAKIERGEVVLTADVLIKLSKLYNVSTDYILGL 62 Query: 94 EVID 97 Sbjct: 63 TDYP 66 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 31/73 (42%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D +Q ++L ++ + E+G + K+ ++ D+I Sbjct: 1 MYQRIRDLREDHDFTQRYVAEVLSFSHTNYAKIERGEVVLTADVLIKLSKLYNVSTDYIL 60 Query: 174 FGDEVIVPKSIKR 186 + + K+ Sbjct: 61 GLTDYPHKINFKK 73 >gi|47569278|ref|ZP_00239963.1| repressor protein, putative [Bacillus cereus G9241] gi|47554049|gb|EAL12415.1| repressor protein, putative [Bacillus cereus G9241] Length = 70 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +++P + ++K +RK ++Q+E K + + T+ E P ++ + KI + Sbjct: 1 MKVEPMGVKNKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFG 60 Query: 167 KHLDWIYFGD 176 ++ I+ + Sbjct: 61 VRVEEIFTLE 70 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 10 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVRVEEIFTL 69 Query: 94 E 94 E Sbjct: 70 E 70 >gi|329927927|ref|ZP_08281955.1| cupin domain protein [Paenibacillus sp. HGF5] gi|328938146|gb|EGG34542.1| cupin domain protein [Paenibacillus sp. HGF5] Length = 189 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 31/86 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K VG ++ IRK+ + +A ++ + E G + +I + + Sbjct: 1 MEPIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 ISF + + + + + Sbjct: 61 ISFTTLIEEAETEVTVVAPDDVEPFH 86 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G L++IRK +G+S +L G+ + L E+G + P I +I Sbjct: 5 HKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGISFT 64 Query: 171 WIYFGDEVIV 180 + E V Sbjct: 65 TLIEEAETEV 74 >gi|320449325|ref|YP_004201421.1| methyltransferase [Thermus scotoductus SA-01] gi|320149494|gb|ADW20872.1| methyltransferase [Thermus scotoductus SA-01] Length = 570 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 1/105 (0%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG ++ +R+A T +A A +S ++ E G + ++ L E+ F + Sbjct: 8 EVGQNLRRLRQARGLTLSGLAAKAGIAKSLLHALEAGRANPTLATLWALARALEVPFGEL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + V + +G RL+ R D + + + Sbjct: 68 VQARPVGDEGVMV-HLIEQTWGRVGERLEVYRMDLLPRSVRWAEA 111 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G L+ +R+ +G++ G+ S L E GR P + + + + Sbjct: 7 YEVGQNLRRLRQARGLTLSGLAAKAGIAKSLLHALEAGRANPTLATLWALARALEVPFGE 66 Query: 172 IYF----GDEVIVPKSIKRA 187 + GDE ++ I++ Sbjct: 67 LVQARPVGDEGVMVHLIEQT 86 >gi|315647016|ref|ZP_07900129.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315277218|gb|EFU40547.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 181 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 29/79 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I++ R T KE+A + S ++ E + SI + N ++F ++ Sbjct: 4 IGEVIRNTRIKQKLTLKEVAKAGSISLSFLSEIERDKANPSISVLKRIANALNVNFTDLF 63 Query: 92 DGEVIDRRYEDVTNKKRLD 110 + K L Sbjct: 64 GEKEQSIVVRKNERKPLLH 82 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IG +++ R + ++ E K + S LS E+ + P I ++I + Sbjct: 1 MNSIGEVIRNTRIKQKLTLKEVAKAGSISLSFLSEIERDKANPSISVLKRIANALNVNFT 60 Query: 171 WIYFGDEVIVPKSIKRAK 188 ++ E + K Sbjct: 61 DLFGEKEQSIVVRKNERK 78 >gi|239835028|ref|ZP_04683356.1| Protein schB [Ochrobactrum intermedium LMG 3301] gi|239823091|gb|EEQ94660.1| Protein schB [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RI+ R+A T ++ + A++ E G+ S ++R + + +S + Sbjct: 25 DIGARIRTRRQALGLTLGYLSEVSGLSTGALSQIERGLVSPTVRTLYTIADVLSMSPAQL 84 Query: 91 YDGEVIDRRYEDVT 104 D + Sbjct: 85 IDPQGFAAAARANP 98 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + R ++ D IGAR+++ R+ G++ ++ G+ LS E+G P Sbjct: 6 KAEISRIAPISEPTPNDAGDIGARIRTRRQALGLTLGYLSEVSGLSTGALSQIERGLVSP 65 Query: 154 EIKPARKIKQVTKKHLDWIY 173 ++ I V + Sbjct: 66 TVRTLYTIADVLSMSPAQLI 85 >gi|271965421|ref|YP_003339617.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508596|gb|ACZ86874.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 77 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 36 IKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 I+ +R A++ TQ E+A + E G S S+ A + + + D ++ Sbjct: 11 IRALRFAHDEMTQAELADRVGVTRQTIIAIEQGRYSPSLEMAFRIARVFRVGLDDVFQYP 70 Query: 95 VID 97 + Sbjct: 71 DTE 73 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 115 GARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R M+Q E +G+ T+ EQGR P ++ A +I +V + LD ++ Sbjct: 8 TNAIRALRFAHDEMTQAELADRVGVTRQTIIAIEQGRYSPSLEMAFRIARVFRVGLDDVF 67 Query: 174 -FGDEVIVPK 182 + D P Sbjct: 68 QYPDTEGDPS 77 >gi|227523255|ref|ZP_03953304.1| XRE family transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227089575|gb|EEI24887.1| XRE family transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 274 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 15/127 (11%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K R+A + TQK++A G +S ++ E G + + + L +IS D I Sbjct: 4 KLGDILKQTRQAQHMTQKQLAEGI-CSQSMLSAIEKGQYTPNANLLIALCRRLKISLDDI 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI------------RKDKGMSQIEFGKLLGM 138 + N+K LD + + + + G +Q + LG+ Sbjct: 63 SLSSNFSIGRKRDFNQK-LDRLCNQHQYQKLFDFLQKPSVLDAIETNGQTQAYY-YYLGV 120 Query: 139 PNSTLSN 145 L Sbjct: 121 SKWHLQQ 127 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK R+ + M+Q + + + S LS E+G+ P + + K LD I Sbjct: 9 LKQTRQAQHMTQKQLAEGI-CSQSMLSAIEKGQYTPNANLLIALCRRLKISLDDI 62 >gi|187939670|gb|ACD38813.1| predicted transcriptional regulator protein [Pseudomonas aeruginosa] gi|187939749|gb|ACD38890.1| hypothetical protein PACL_0632 [Pseudomonas aeruginosa] Length = 271 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K RK + TQ+++A + ++ E G S+ + L + N + +W+ +G Sbjct: 1 MKLARKHADLTQRQLAEAVGVSQPVISQLEKGENLQSV-HLLKIANVCGVDPEWLAEGTG 59 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + A + +Q + Sbjct: 60 RPPGFSAREPSAEYQAASSTADIVRSMLASKAAQKLSAEA 99 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K RK ++Q + + +G+ +S E+G + + KI V +W+ G Sbjct: 1 MKLARKHADLTQRQLAEAVGVSQPVISQLEKGENLQSVHLL-KIANVCGVDPEWLAEG 57 >gi|160934629|ref|ZP_02082015.1| hypothetical protein CLOLEP_03502 [Clostridium leptum DSM 753] gi|156866082|gb|EDO59454.1| hypothetical protein CLOLEP_03502 [Clostridium leptum DSM 753] Length = 139 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 +F F + + + ++ + + Y + RI +R N T +EM++ Q + Sbjct: 6 LFKTSFRDIPISYTEIKGELLLYDFKNYENFIANRIYQLRNQKNVTAREMSLAIGQHKGY 65 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV-TNKKRLDPYAIGARLK 119 + EN SI+ LY+ + I+ + + + +++ + K L + LK Sbjct: 66 ITQIENRQNLPSIQGLLYICEYFNITPEEFFADSTNPIKSKEIYADLKDLSSDQLDTILK 125 Query: 120 SIRKDKGMSQ 129 + K ++Q Sbjct: 126 IAKAFKALNQ 135 Score = 43.4 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+ +R K ++ E +G ++ E + +P I+ I + + Sbjct: 35 NFIANRIYQLRNQKNVTAREMSLAIGQHKGYITQIENRQNLPSIQGLLYICEYFNITPEE 94 Query: 172 IY 173 + Sbjct: 95 FF 96 >gi|307708176|ref|ZP_07644643.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307615622|gb|EFN94828.1| transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 228 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 10/103 (9%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQKE+A A + +E G+ S L N ++ + Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVFQLENILKVPKGYFTQI 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E++ + + K + + +SQ E + Sbjct: 65 EIVRLYHSLSKQGQE----------KVVLYARNLSQEEQAHKV 97 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ RK+ ++Q E + LG+ S +E+G P + +++ + K + Sbjct: 1 MYQPEKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVFQLENILKVPKGY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|262278864|ref|ZP_06056649.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259215|gb|EEY77948.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 197 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +++++R A T +A SA++L E G S + L N Sbjct: 1 MEDINIRIAQQVRELRLARGYTLDVLATRCQVSRSAISLIERGEASPTAVVLEKLANGLG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA--RLKS 120 + ++ + ++ + + + + + ++ Sbjct: 61 VPLTQLFANQQGNQSPQPIVRRSQQSEWKDPETGYIRR 98 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 3/93 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF- 174 +++ +R +G + + S +S E+G P K+ L ++ Sbjct: 10 QQVRELRLARGYTLDVLATRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLFAN 69 Query: 175 --GDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 G++ P + + ++ ++ +P Sbjct: 70 QQGNQSPQPIVRRSQQSEWKDPETGYIRRQISP 102 >gi|228931054|ref|ZP_04094008.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828617|gb|EEM74299.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 128 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 6 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 63 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D Sbjct: 1 MRRMLERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVD 60 Query: 171 WIY 173 +I Sbjct: 61 YIL 63 >gi|150388021|ref|YP_001318070.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149947883|gb|ABR46411.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 140 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RKAN+ T ++ ++ EN S L + +++S DW+ Sbjct: 4 IGERIRFSRKANHLTLTDVNKLTGLSIGNLSELENNKFMPSTNALLAFKKLFQVSIDWLL 63 Query: 92 DGEVIDRRYEDVT 104 G+ + + Sbjct: 64 TGKYSNEMTTNPQ 76 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IG R++ RK ++ + KL G+ LS E + +P K++ + +D Sbjct: 1 MNSIGERIRFSRKANHLTLTDVNKLTGLSIGNLSELENNKFMPSTNALLAFKKLFQVSID 60 Query: 171 WIYFGD 176 W+ G Sbjct: 61 WLLTGK 66 >gi|317498279|ref|ZP_07956578.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894488|gb|EFV16671.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 159 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 5/100 (5%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +R+ + TQ++ + V +E+G ++ E+ + +W+ G Sbjct: 3 KRIKKLRRELDLTQEKFGARIGVKGNTVAQWESGRNEPPDSSLAFICREFGVMDEWLRFG 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR-----LKSIRKDKGMS 128 E T L ++ + K+K + Sbjct: 63 TGPMYAPEPTTELDALAKKFNLKHKDYVFIEKLCKNKKLR 102 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R++ ++Q +FG +G+ +T++ +E GR P I + +W+ Sbjct: 1 MNKRIKKLRRELDLTQEKFGARIGVKGNTVAQWESGRNEPPDSSLAFICREFGVMDEWLR 60 Query: 174 FG 175 FG Sbjct: 61 FG 62 >gi|283797098|ref|ZP_06346251.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] gi|291075515|gb|EFE12879.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] Length = 111 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +Q+ ++G RI+ R+A +++ +A A+ S + E G S + + L + Sbjct: 2 KKQFNIEIGGRIRKCREALGYSRETLAEKADLASSFLGTIELGSGSFTAESLVKLCHALG 61 Query: 85 ISFDWIYDGEVI 96 +S D+I G+ Sbjct: 62 VSADYILFGKEE 73 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ IG R++ R+ G S+ + + +S L E G + K+ Sbjct: 1 MKKQFNIEIGGRIRKCREALGYSRETLAEKADLASSFLGTIELGSGSFTAESLVKLCHAL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRA 187 D+I FG E S A Sbjct: 61 GVSADYILFGKEEHGDLSTVNA 82 >gi|148994781|ref|ZP_01823852.1| hypothetical protein CGSSp9BS68_01273 [Streptococcus pneumoniae SP9-BS68] gi|149003970|ref|ZP_01828778.1| hypothetical protein CGSSp14BS69_02881 [Streptococcus pneumoniae SP14-BS69] gi|149013158|ref|ZP_01833975.1| hypothetical protein CGSSp19BS75_12238 [Streptococcus pneumoniae SP19-BS75] gi|168483136|ref|ZP_02708088.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|168488904|ref|ZP_02713103.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|182684188|ref|YP_001835935.1| hypothetical protein SPCG_1218 [Streptococcus pneumoniae CGSP14] gi|225858850|ref|YP_002740360.1| hypothetical protein SP70585_1105 [Streptococcus pneumoniae 70585] gi|237650039|ref|ZP_04524291.1| hypothetical protein SpneC1_04825 [Streptococcus pneumoniae CCRI 1974] gi|237821750|ref|ZP_04597595.1| hypothetical protein SpneC19_05472 [Streptococcus pneumoniae CCRI 1974M2] gi|303256100|ref|ZP_07342120.1| hypothetical protein CGSSpBS455_11370 [Streptococcus pneumoniae BS455] gi|303260599|ref|ZP_07346564.1| hypothetical protein CGSSp9vBS293_01687 [Streptococcus pneumoniae SP-BS293] gi|303263011|ref|ZP_07348944.1| hypothetical protein CGSSp14BS292_06339 [Streptococcus pneumoniae SP14-BS292] gi|303264859|ref|ZP_07350775.1| hypothetical protein CGSSpBS397_01811 [Streptococcus pneumoniae BS397] gi|303266922|ref|ZP_07352799.1| hypothetical protein CGSSpBS457_08599 [Streptococcus pneumoniae BS457] gi|303269104|ref|ZP_07354884.1| hypothetical protein CGSSpBS458_06524 [Streptococcus pneumoniae BS458] gi|147758029|gb|EDK65035.1| hypothetical protein CGSSp14BS69_02881 [Streptococcus pneumoniae SP14-BS69] gi|147763009|gb|EDK69953.1| hypothetical protein CGSSp19BS75_12238 [Streptococcus pneumoniae SP19-BS75] gi|147927047|gb|EDK78089.1| hypothetical protein CGSSp9BS68_01273 [Streptococcus pneumoniae SP9-BS68] gi|172043442|gb|EDT51488.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|182629522|gb|ACB90470.1| hypothetical protein SPCG_1218 [Streptococcus pneumoniae CGSP14] gi|183572348|gb|EDT92876.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|225721783|gb|ACO17637.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|302596947|gb|EFL64073.1| hypothetical protein CGSSpBS455_11370 [Streptococcus pneumoniae BS455] gi|302635838|gb|EFL66340.1| hypothetical protein CGSSp14BS292_06339 [Streptococcus pneumoniae SP14-BS292] gi|302638249|gb|EFL68719.1| hypothetical protein CGSSpBS293_01687 [Streptococcus pneumoniae SP-BS293] gi|302641353|gb|EFL71720.1| hypothetical protein CGSSpBS458_06524 [Streptococcus pneumoniae BS458] gi|302643555|gb|EFL73825.1| hypothetical protein CGSSpBS457_08599 [Streptococcus pneumoniae BS457] gi|302645547|gb|EFL75778.1| hypothetical protein CGSSpBS397_01811 [Streptococcus pneumoniae BS397] gi|332073420|gb|EGI83899.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332201543|gb|EGJ15613.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 67 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ + +Q ++A + +SA + E+G + L Y+++ D+I + + Sbjct: 4 RLKNLREDKDLSQCQIAQYLHCSQSAYSRIESGKQDIPTSFLKQLAKLYQVTTDYILEMD 63 Query: 95 VIDR 98 Sbjct: 64 KFSC 67 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK++R+DK +SQ + + L S S E G+ +++ ++ + D+I Sbjct: 1 MYIRLKNLREDKDLSQCQIAQYLHCSQSAYSRIESGKQDIPTSFLKQLAKLYQVTTDYIL 60 Query: 174 FGDE 177 D+ Sbjct: 61 EMDK 64 >gi|121603936|ref|YP_981265.1| XRE family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120592905|gb|ABM36344.1| transcriptional regulator, XRE family [Polaromonas naphthalenivorans CJ2] Length = 223 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ RKA +++A G S ++ E G+ S S+R L NE ++ + + Sbjct: 38 LGEQVRHRRKALGLPLQQVARGCGVSVSLLSQIERGLRSISLRTLAALSNELQLPLETLI 97 Query: 92 DGEVIDRRYEDVT 104 D+ Sbjct: 98 RNTQHDQGEGAPE 110 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ RK G+ + + G+ S LS E+G ++ + + L+ + Sbjct: 40 EQVRHRRKALGLPLQQVARGCGVSVSLLSQIERGLRSISLRTLAALSNELQLPLETLI 97 >gi|328883064|emb|CCA56303.1| hypothetical protein SVEN_3017 [Streptomyces venezuelae ATCC 10712] Length = 126 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+++R A +Q ++A + +V +E G + + + ++ + Sbjct: 67 GHRIRELRTAAGLSQDQLADRIHMERRSVQRYERGERDPRFTDLVLIADALGVTVAELVR 126 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R G+SQ + + M ++ YE+G P I + + Sbjct: 68 HRIRELRTAAGLSQDQLADRIHMERRSVQRYERGERDPRFTDLVLIADALGVTVAELV 125 >gi|329889881|ref|ZP_08268224.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845182|gb|EGF94746.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 133 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 35/115 (30%), Gaps = 2/115 (1%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + + + Y + +G R++ RK +Q + + +ENG S + Sbjct: 1 MPDSQSKQDYNRAIGERVRRRRKELGLSQTALGAKIGVSCQQIQKYENGRNSVAASRLHQ 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 L + + + D + + L +++ R+ Sbjct: 61 LSLALATTAPALIGLKSWDEGEDGGERARLLQAWSVLPN--HQREPLLRYVEALA 113 Score = 41.1 bits (95), Expect = 0.084, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + K+ AIG R++ RK+ G+SQ G +G+ + YE GR + Sbjct: 1 MPDSQSKQDYNRAIGERVRRRRKELGLSQTALGAKIGVSCQQIQKYENGRNSVAASRLHQ 60 Query: 161 IKQVTKKH 168 + Sbjct: 61 LSLALATT 68 >gi|311033076|ref|ZP_07711166.1| hypothetical protein Bm3-1_21479 [Bacillus sp. m3-13] Length = 68 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIKD+RKA TQ+++A+ ++ E+G + S+ A + ++ + ++ Sbjct: 3 NRIKDLRKAAKMTQEDLAVQVGVSRQSIIAIESGKYNPSLELAYNISKVFDCIIEEVFIL 62 Query: 94 EV 95 E Sbjct: 63 EE 64 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +RK M+Q + +G+ ++ E G+ P ++ A I +V ++ ++ Sbjct: 1 MKNRIKDLRKAAKMTQEDLAVQVGVSRQSIIAIESGKYNPSLELAYNISKVFDCIIEEVF 60 Query: 174 FGDE 177 +E Sbjct: 61 ILEE 64 >gi|317054864|ref|YP_004103331.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447133|gb|ADU20697.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 211 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + +QY + VG R++ R TQK+ A +S ++L E G S + L Y Sbjct: 5 KTQQYLQQVGERLRGARLLMGITQKQAAQATGMSQSFLSLVERGRKSICTAQIISLIRYY 64 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLD 110 ++ ++ I+ E D D + D Sbjct: 65 KVPYEMIFGSEEKDYNLSDFPSGGSAD 91 Score = 41.5 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK--QVTKKHLDWIY 173 RL+ R G++Q + + GM S LS E+GR I A+ I + K + I+ Sbjct: 15 ERLRGARLLMGITQKQAAQATGMSQSFLSLVERGRK--SICTAQIISLIRYYKVPYEMIF 72 Query: 174 FGDE 177 +E Sbjct: 73 GSEE 76 >gi|302064024|ref|ZP_07255565.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato K40] Length = 120 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK+ +Q ++A V+ +E G I + + + ++ + Sbjct: 11 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELL 70 Query: 92 DG 93 G Sbjct: 71 PG 72 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 42/84 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K++RK +SQ + +++G +S YE+G T+P I+ +I V + G Sbjct: 13 AKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELLPG 72 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + ++ + + + + ++ D Sbjct: 73 GQDVLRTRLLSLRQEITERIAEVD 96 >gi|302875482|ref|YP_003844115.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307689097|ref|ZP_07631543.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578339|gb|ADL52351.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 132 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK R + + +A A+ +S + ENG +TS++ + + + + Sbjct: 2 NIGEKIKQYRNLAGLSIRVLAAKADISKSTLGDIENGKTNTSVKTITSIAEALNVDVNIL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E D + K LD + Sbjct: 62 MNAEATDDNETPLP--KILDVKTAMDLI 87 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K R G+S + STL + E G+T +K I + ++ Sbjct: 1 MNIGEKIKQYRNLAGLSIRVLAAKADISKSTLGDIENGKTNTSVKTITSIAEALNVDVNI 60 Query: 172 IYFGD 176 + + Sbjct: 61 LMNAE 65 >gi|240145074|ref|ZP_04743675.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257202900|gb|EEV01185.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 67 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+D+R N+ T KE++ + +E G+ I + L + Y S D++ Sbjct: 4 QRIQDLRIDNDLTIKEISAMLGLHRDVYSRYEKGLRDFPIDILIKLADIYHCSIDYLV 61 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R D ++ E +LG+ S YE+G I K+ + +D++ Sbjct: 1 MKFQRIQDLRIDNDLTIKEISAMLGLHRDVYSRYEKGLRDFPIDILIKLADIYHCSIDYL 60 Query: 173 Y 173 Sbjct: 61 V 61 >gi|125973269|ref|YP_001037179.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003748|ref|ZP_05428736.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417471|ref|ZP_06248491.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713494|gb|ABN51986.1| transcriptional regulator, XRE family with cupin sensor [Clostridium thermocellum ATCC 27405] gi|255992309|gb|EEU02403.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408873|gb|EFB39131.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940499|gb|ADU74533.1| Cupin 2 conserved barrel domain protein [Clostridium thermocellum DSM 1313] Length = 179 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 32/88 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ +R AN TQ+E+A A + ++ EN + S SI + + Sbjct: 2 QIGAKIRQLRIANQMTQEELADRAELSKGFISQIENDLTSPSINTLVDILQCLGTDLKTF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + + Sbjct: 62 FSDSEDKQIVFREKDYFSKTDNELKNTI 89 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 24/67 (35%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA+++ +R M+Q E + +S E T P I I Q L Sbjct: 1 MQIGAKIRQLRIANQMTQEELADRAELSKGFISQIENDLTSPSINTLVDILQCLGTDLKT 60 Query: 172 IYFGDEV 178 + E Sbjct: 61 FFSDSED 67 >gi|318058268|ref|ZP_07976991.1| DNA-binding protein [Streptomyces sp. SA3_actG] gi|318078843|ref|ZP_07986175.1| DNA-binding protein [Streptomyces sp. SA3_actF] Length = 204 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + V ++++R+ T + A A+ + ++ E G S+ L L Y + Sbjct: 11 ELAVTVAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTT 70 Query: 87 FDWIY 91 + Sbjct: 71 VSELL 75 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+ +R+ G++ K + + LS E GR P + + + + + G+ Sbjct: 19 HLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL-GE 77 Query: 177 EVIVPKSIKRA 187 S+ RA Sbjct: 78 TPAGAGSVVRA 88 >gi|307324180|ref|ZP_07603388.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889911|gb|EFN20889.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 297 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G ++ +R+ T +E+A +S ++ ENG S S R L Y++ Sbjct: 11 RRRLGQELRRLRQEKGMTAEEVAEELMVSQSKISRLENGRRSISQRDVRDLCRTYKV 67 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R++KGM+ E + L + S +S E GR + R + + K Sbjct: 16 QELRRLRQEKGMTAEEVAEELMVSQSKISRLENGRRSISQRDVRDLCRTYKV-------E 68 Query: 176 DEVIVPKSIKRAKGNQ 191 D+ +V ++ AK ++ Sbjct: 69 DKALVDSLMQMAKESR 84 >gi|306840350|ref|ZP_07473120.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] gi|306844086|ref|ZP_07476680.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] gi|306275529|gb|EFM57261.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] gi|306289682|gb|EFM60876.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] Length = 470 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 67 Query: 92 DGEVID 97 G+ Sbjct: 68 LGDDDR 73 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|300173268|ref|YP_003772434.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887647|emb|CBL91615.1| Transcriptional regulator, XRE family,putative [Leuconostoc gasicomitatum LMG 18811] Length = 71 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +RK + +Q++ A ++ ENG + SI A+ + + S + I+ Sbjct: 3 NNLEKLRKEHKVSQQDFAQYLGVTRQTISSLENGRYNPSILLAMKIARYFGKSVENIFIY 62 Query: 94 EVIDRRYED 102 +E Sbjct: 63 TEESDNHER 71 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+ +RK+ +SQ +F + LG+ T+S+ E GR P I A KI + K ++ I+ Sbjct: 1 MLNNLEKLRKEHKVSQQDFAQYLGVTRQTISSLENGRYNPSILLAMKIARYFGKSVENIF 60 Query: 174 FGDEV 178 E Sbjct: 61 IYTEE 65 >gi|291523416|emb|CBK81709.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 209 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + K+ A+G LK + Sbjct: 64 VSIEWL-KGETDEYETDITDKKELQIRDAMGDILKQL 99 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL-KGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 DEYETDITDKKE 85 >gi|268610362|ref|ZP_06144089.1| SOS-response transcriptional repressor [Ruminococcus flavefaciens FD-1] Length = 217 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R+ +R TQ E+A+ S + E+G + + + ++ Sbjct: 3 FGERVLALRTEKGMTQDELALAVGYKSRSTIAKIESGERDPHQSMIAAIAKALDTTPAYL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 E ++ + N ++ G L Sbjct: 63 MGWEESEQSPDKDKNLSKIPYTEEGTVL 90 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 120 SIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 ++R +KGM+Q E +G ST++ E G P I + ++ +E Sbjct: 9 ALRTEKGMTQDELALAVGYKSRSTIAKIESGERDPHQSMIAAIAKALDTTPAYLMGWEES 68 Query: 179 IVPKSIKR 186 + Sbjct: 69 EQSPDKDK 76 >gi|261219534|ref|ZP_05933815.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261322029|ref|ZP_05961226.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260924623|gb|EEX91191.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294719|gb|EEX98215.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 472 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 10 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 69 Query: 92 DGEVID 97 G+ Sbjct: 70 LGDDDR 75 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 8 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 67 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 68 ISLGDDDRLLSAVSEA 83 >gi|261222350|ref|ZP_05936631.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265998315|ref|ZP_06110872.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260920934|gb|EEX87587.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262552783|gb|EEZ08773.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 472 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 10 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 69 Query: 92 DGEVID 97 G+ Sbjct: 70 LGDDDR 75 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 8 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 67 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 68 ISLGDDDRLLSAVSEA 83 >gi|261214180|ref|ZP_05928461.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261314092|ref|ZP_05953289.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317820|ref|ZP_05957017.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261752493|ref|ZP_05996202.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755152|ref|ZP_05998861.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265988850|ref|ZP_06101407.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|260915787|gb|EEX82648.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261297043|gb|EEY00540.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261303118|gb|EEY06615.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261742246|gb|EEY30172.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261744905|gb|EEY32831.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264661047|gb|EEZ31308.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 472 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 10 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 69 Query: 92 DGEVID 97 G+ Sbjct: 70 LGDDDR 75 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 8 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 67 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 68 ISLGDDDRLLSAVSEA 83 >gi|260168886|ref|ZP_05755697.1| transcriptional regulator, Cro/CI family protein [Brucella sp. F5/99] Length = 470 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 67 Query: 92 DGEVID 97 G+ Sbjct: 68 LGDDDR 73 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|260566283|ref|ZP_05836753.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|260155801|gb|EEW90881.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] Length = 472 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 10 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 69 Query: 92 DGEVID 97 G+ Sbjct: 70 LGDDDR 75 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 8 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 67 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 68 ISLGDDDRLLSAVSEA 83 >gi|260565561|ref|ZP_05836045.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|265991265|ref|ZP_06103822.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995101|ref|ZP_06107658.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265999437|ref|ZP_05466359.2| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260151629|gb|EEW86723.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|262766214|gb|EEZ12003.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263002049|gb|EEZ14624.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093955|gb|EEZ17889.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] Length = 472 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 10 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 69 Query: 92 DGEVID 97 G+ Sbjct: 70 LGDDDR 75 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 8 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 67 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 68 ISLGDDDRLLSAVSEA 83 >gi|302522960|ref|ZP_07275302.1| regulatory protein [Streptomyces sp. SPB78] gi|302431855|gb|EFL03671.1| regulatory protein [Streptomyces sp. SPB78] Length = 204 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + V ++++R+ T + A A+ + ++ E G S+ L L Y + Sbjct: 11 ELAVTVAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTT 70 Query: 87 FDWIY 91 + Sbjct: 71 VSELL 75 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+ +R+ G++ K + + LS E GR P + + + + + G+ Sbjct: 19 HLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL-GE 77 Query: 177 EVIVPKSIKRA 187 P S+ RA Sbjct: 78 TPAGPGSVVRA 88 >gi|256159923|ref|ZP_05457641.1| hypothetical protein BcetM4_13064 [Brucella ceti M490/95/1] gi|256255153|ref|ZP_05460689.1| hypothetical protein BcetB_12846 [Brucella ceti B1/94] Length = 470 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 67 Query: 92 DGEVID 97 G+ Sbjct: 68 LGDDDR 73 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|254714255|ref|ZP_05176066.1| hypothetical protein BcetM6_13066 [Brucella ceti M644/93/1] gi|254717691|ref|ZP_05179502.1| hypothetical protein BcetM_15065 [Brucella ceti M13/05/1] Length = 470 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 67 Query: 92 DGEVID 97 G+ Sbjct: 68 LGDDDR 73 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|238909167|ref|YP_002939634.1| hypothetical protein EUBELI_10063 [Eubacterium eligens ATCC 27750] gi|238873404|gb|ACR73113.1| Hypothetical protein EUBELI_10063 [Eubacterium eligens ATCC 27750] Length = 69 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R+ + + ++++R+ T K++ G E +++ +E G L Y Sbjct: 1 MREIEETLAHNLREVREKKGYTLKDVVKGTGYTEVSISRWETGTRIPKATVLYNLAKFYG 60 Query: 85 ISFDWIY 91 +S D + Sbjct: 61 VSVDRFF 67 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 L+ +R+ KG + + K G ++S +E G IP+ + + +D ++ Sbjct: 10 HNLREVREKKGYTLKDVVKGTGYTEVSISRWETGTRIPKATVLYNLAKFYGVSVDRFFW 68 >gi|229018185|ref|ZP_04175058.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1273] gi|229024368|ref|ZP_04180821.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1272] gi|228736935|gb|EEL87477.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1272] gi|228743110|gb|EEL93237.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1273] Length = 433 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 3/100 (3%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++G RI+ +R TQ E+ + ++ E+G S + + + Sbjct: 5 NRESREMEIGERIRQVRMHKGLTQGELVSEI-CSVTYLSRIESGKIKPSSSFLKKVSKKL 63 Query: 84 EISFDWIYDG--EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ D++ +G E I ++ NK + D A L S+ Sbjct: 64 DVDGDYLIEGNHEEIKLTILEICNKYKKDKSITKAELSSL 103 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 1/95 (1%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + IG R++ +R KG++Q E + + LS E G+ P +K+ Sbjct: 1 MKWLNRESREMEIGERIRQVRMHKGLTQGELVSEI-CSVTYLSRIESGKIKPSSSFLKKV 59 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 + D++ G+ + +I KS Sbjct: 60 SKKLDVDGDYLIEGNHEEIKLTILEICNKYKKDKS 94 >gi|225627656|ref|ZP_03785693.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|261758376|ref|ZP_06002085.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|225617661|gb|EEH14706.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|261738360|gb|EEY26356.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] Length = 472 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 10 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 69 Query: 92 DGEVID 97 G+ Sbjct: 70 LGDDDR 75 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 8 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 67 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 68 ISLGDDDRLLSAVSEA 83 >gi|218288780|ref|ZP_03493043.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218241138|gb|EED08314.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 167 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 VG RI +RK TQ ++A A SA+ ++E R + + Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGV 63 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+ +RK++G++Q + + + S ++ YE R P+ + +I + + I Sbjct: 12 ERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGVEMAQI 68 >gi|163843452|ref|YP_001627856.1| hypothetical protein BSUIS_A1235 [Brucella suis ATCC 23445] gi|254693892|ref|ZP_05155720.1| hypothetical protein Babob3T_04377 [Brucella abortus bv. 3 str. Tulya] gi|254701927|ref|ZP_05163755.1| hypothetical protein Bsuib55_13872 [Brucella suis bv. 5 str. 513] gi|254704472|ref|ZP_05166300.1| hypothetical protein Bsuib36_11190 [Brucella suis bv. 3 str. 686] gi|254706633|ref|ZP_05168461.1| hypothetical protein BpinM_06519 [Brucella pinnipedialis M163/99/10] gi|254710258|ref|ZP_05172069.1| hypothetical protein BpinB_08297 [Brucella pinnipedialis B2/94] gi|256031752|ref|ZP_05445366.1| hypothetical protein BpinM2_14069 [Brucella pinnipedialis M292/94/1] gi|256369612|ref|YP_003107122.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|294852525|ref|ZP_06793198.1| hypothetical protein BAZG_01451 [Brucella sp. NVSL 07-0026] gi|163674175|gb|ABY38286.1| protein of unknown function DUF955 [Brucella suis ATCC 23445] gi|255999774|gb|ACU48173.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|294821114|gb|EFG38113.1| hypothetical protein BAZG_01451 [Brucella sp. NVSL 07-0026] Length = 470 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 67 Query: 92 DGEVID 97 G+ Sbjct: 68 LGDDDR 73 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|161619141|ref|YP_001593028.1| hypothetical protein BCAN_A1208 [Brucella canis ATCC 23365] gi|161335952|gb|ABX62257.1| protein of unknown function DUF955 [Brucella canis ATCC 23365] Length = 470 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 67 Query: 92 DGEVID 97 G+ Sbjct: 68 LGDDDR 73 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|148560660|ref|YP_001259108.1| hypothetical protein BOV_1147 [Brucella ovis ATCC 25840] gi|148371917|gb|ABQ61896.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 472 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 10 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 69 Query: 92 DGEVID 97 G+ Sbjct: 70 LGDDDR 75 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 8 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 67 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 68 ISLGDDDRLLSAVSEA 83 >gi|17987085|ref|NP_539719.1| MerR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|225852683|ref|YP_002732916.1| hypothetical protein BMEA_A1231 [Brucella melitensis ATCC 23457] gi|256044838|ref|ZP_05447742.1| hypothetical protein Bmelb1R_10124 [Brucella melitensis bv. 1 str. Rev.1] gi|256113744|ref|ZP_05454548.1| hypothetical protein Bmelb3E_13308 [Brucella melitensis bv. 3 str. Ether] gi|17982745|gb|AAL51983.1| transcriptional regulator, merr family [Brucella melitensis bv. 1 str. 16M] gi|225641048|gb|ACO00962.1| protein of unknown function DUF955 [Brucella melitensis ATCC 23457] gi|326409205|gb|ADZ66270.1| helix-turn-helix domain-containing protein [Brucella melitensis M28] gi|326538914|gb|ADZ87129.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 470 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 67 Query: 92 DGEVID 97 G+ Sbjct: 68 LGDDDR 73 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|23502065|ref|NP_698192.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|23348021|gb|AAN30107.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] Length = 470 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAIS 67 Query: 92 DGEVID 97 G+ Sbjct: 68 LGDDDR 73 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|331268175|ref|YP_004385884.1| putative prophage repressor [Clostridium botulinum BKT015925] gi|329127725|gb|AEB77665.1| putative prophage repressor [Clostridium botulinum BKT015925] Length = 108 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 28/84 (33%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++RK Q A ++ ++ E G+ + R + Y +S +W+ +G Sbjct: 3 ERIKELRKLKGLNQSTFAKSLGLSQNHISSIEKGVRGLTTRTINDICRIYNVSPNWLING 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR 117 + Sbjct: 63 TGDIFIDTTEQLYTNNEVKEFIEM 86 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 39/82 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +RK KG++Q F K LG+ + +S+ E+G + I ++ +W+ Sbjct: 1 MNERIKELRKLKGLNQSTFAKSLGLSQNHISSIEKGVRGLTTRTINDICRIYNVSPNWLI 60 Query: 174 FGDEVIVPKSIKRAKGNQSSKK 195 G I + ++ N K+ Sbjct: 61 NGTGDIFIDTTEQLYTNNEVKE 82 >gi|327440628|dbj|BAK16993.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 416 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 11/106 (10%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++RK T ++A G + ++L ENG S+ ++ + +I + Sbjct: 3 NIGAKIKELRKERKMTLAQVA-GDRITKGMLSLIENGKAQPSMESLQHIAKQLDIDVSEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E N +++ +K + +K + + + Sbjct: 62 MQTE----------NHQQMKELYRDVEIKRLALNKEHDDKKINEKV 97 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 9/98 (9%) Query: 111 PYAIGARLKSIRKDKGMSQIEFG-KLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 IGA++K +RK++ M+ + + LS E G+ P ++ + I + + Sbjct: 1 MLNIGAKIKELRKERKMTLAQVAGDR--ITKGMLSLIENGKAQPSMESLQHIAKQLDIDV 58 Query: 170 DWIYFGD------EVIVPKSIKRAKGNQSSKKSKKDKK 201 + + E+ IKR N+ K ++K Sbjct: 59 SELMQTENHQQMKELYRDVEIKRLALNKEHDDKKINEK 96 >gi|326943495|gb|AEA19388.1| hypothetical protein CT43_P281045 [Bacillus thuringiensis serovar chinensis CT-43] Length = 108 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 2/105 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ ++RK TQ +++ N + +E G + L + +S D ++ Sbjct: 4 LSKRLAELRKKQGYTQSDISHRLNIARTTYANWEYGKADPDADSIMNLAEIHNVSIDELF 63 Query: 92 DGEVIDRRYEDVTNKKRLD--PYAIGARLKSIRKDKGMSQIEFGK 134 ++ D P L+ + + F K Sbjct: 64 GRNAPLESKLELIKVAISDLPPQKQQEVLEVLIDYTYFIKKHFAK 108 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 2/90 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK +G +Q + L + +T +N+E G+ P+ + ++ +D Sbjct: 1 MSHLSKRLAELRKKQGYTQSDISHRLNIARTTYANWEYGKADPDADSIMNLAEIHNVSID 60 Query: 171 WIYFGDEVIVPK--SIKRAKGNQSSKKSKK 198 ++ + + K IK A + +K ++ Sbjct: 61 ELFGRNAPLESKLELIKVAISDLPPQKQQE 90 >gi|317131818|ref|YP_004091132.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469797|gb|ADU26401.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 186 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IKD R K+ +E+A S +++ ENG S ++ + + I + Sbjct: 6 IGQTIKDRRIKMGKSIREIASACEISPSTISMIENGKTSPNLLTLKAVCDALNIPVFSLL 65 Query: 92 DGEVIDR 98 E DR Sbjct: 66 LDEDEDR 72 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG +K R G S E + ST+S E G+T P + + + Sbjct: 1 MDLALIGQTIKDRRIKMGKSIREIASACEISPSTISMIENGKTSPNLLTLKAVCDALNIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAK 188 + + ++ + ++R+ Sbjct: 61 VFSLLLDEDEDRIRLVRRSN 80 >gi|290476510|ref|YP_003469415.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004] gi|289175848|emb|CBJ82651.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004] Length = 92 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ RK T E+A + + ++ +E G S+ + + + + DW Sbjct: 7 VGKRIQIKRKEIGMTVAELADRISVSQQQLSRYERGTNKISLEHLVDVSIALKTPADWFL 66 Query: 92 DG 93 + Sbjct: 67 ED 68 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ RK+ GM+ E + + LS YE+G ++ + K DW Sbjct: 9 KRIQIKRKEIGMTVAELADRISVSQQQLSRYERGTNKISLEHLVDVSIALKTPADWFL 66 >gi|238924501|ref|YP_002938017.1| hypothetical protein EUBREC_2142 [Eubacterium rectale ATCC 33656] gi|238876176|gb|ACR75883.1| Hypothetical protein EUBREC_2142 [Eubacterium rectale ATCC 33656] Length = 108 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 7/68 (10%), Positives = 29/68 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ + ++ ++A + + ++ + NG+ + ++ + L + ++S D++ Sbjct: 8 ERLSHCMQEHHLNGNDLAALSGVTAATISRYLNGLRTPTVDNVVLLADALDVSVDYLLGR 67 Query: 94 EVIDRRYE 101 + Sbjct: 68 HNVPDDKM 75 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 31/89 (34%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D RL ++ ++ + L G+ +T+S Y G P + + Sbjct: 1 MDINKFSERLSHCMQEHHLNGNDLAALSGVTAATISRYLNGLRTPTVDNVVLLADALDVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 +D++ V K + SS + Sbjct: 61 VDYLLGRHNVPDDKMLVSLYSIASSDDKR 89 >gi|148985005|ref|ZP_01818248.1| transcriptional regulator, putative [Streptococcus pneumoniae SP3-BS71] gi|147922703|gb|EDK73820.1| transcriptional regulator, putative [Streptococcus pneumoniae SP3-BS71] gi|301800013|emb|CBW32605.1| putative epsilon antitoxin [Streptococcus pneumoniae OXC141] Length = 158 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQHEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQHEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|75910246|ref|YP_324542.1| molybdate metabolism transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703971|gb|ABA23647.1| transcriptional regulator of molybdate metabolism, XRE family [Anabaena variabilis ATCC 29413] Length = 376 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK IR +Q+++A A ++ E+G + S+ L L + + Sbjct: 6 NICNNIKSIRTRLGMSQQDLANIAGVTRQTISGVESGQYAPSVAITLRLAKALGCQVENL 65 Query: 91 YDGEVI 96 + E Sbjct: 66 FWLEDD 71 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +KSIR GMSQ + + G+ T+S E G+ P + ++ + ++ +++ Sbjct: 9 NNIKSIRTRLGMSQQDLANIAGVTRQTISGVESGQYAPSVAITLRLAKALGCQVENLFWL 68 Query: 176 DEVIVPKSIKRAK 188 ++ + AK Sbjct: 69 EDDLPEIEAVLAK 81 >gi|89897113|ref|YP_520600.1| hypothetical protein DSY4367 [Desulfitobacterium hafniense Y51] gi|89336561|dbj|BAE86156.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 75 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I RK TQ+E+A AV+ +E I L +IS D + Sbjct: 1 MAKNICRYRKEKGLTQEELARKLGVTFQAVSKWETAQTLPDITLLPGLSQLLDISIDKLL 60 Query: 92 DGEVIDRR 99 D++ Sbjct: 61 GYVSYDKQ 68 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + RK+KG++Q E + LG+ +S +E +T+P+I + Q+ +D + Sbjct: 1 MAKNICRYRKEKGLTQEELARKLGVTFQAVSKWETAQTLPDITLLPGLSQLLDISIDKLL 60 >gi|84500659|ref|ZP_00998908.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391612|gb|EAQ03944.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 214 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 31/84 (36%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ + + +G ++ +R T E+A ++ ENG+ S S+ Sbjct: 13 QDPHALRDAREKNLEVAIGREVRSLRHRQRMTGAELAAQTGLSVGMLSKIENGVISPSLT 72 Query: 75 YALYLRNEYEISFDWIYDGEVIDR 98 L + ++ ++ G R Sbjct: 73 TISALAHALKVPLVQLFSGYEEPR 96 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG ++S+R + M+ E G+ LS E G P + + K L + Sbjct: 29 AIGREVRSLRHRQRMTGAELAAQTGLSVGMLSKIENGVISPSLTTISALAHALKVPLVQL 88 Query: 173 YFGDEV 178 + G E Sbjct: 89 FSGYEE 94 >gi|313906627|ref|ZP_07839950.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313468543|gb|EFR63922.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 103 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 5/99 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++++R + TQKE+A+ N ++ EN S+R Y ++FD I Sbjct: 3 LGAKVREMRIKSGMTQKEVAMNLNVTPGYISNVENNRTVPSLRLLSYFAKVTGMTFDEIV 62 Query: 92 DGEVIDRRYEDVTNK-----KRLDPYAIGARLKSIRKDK 125 G+ + D+ K ++ L+++R K Sbjct: 63 GGKKNEYIITDLDRKLQGVLAKIPDNMKDKVLRTVRMWK 101 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A+++ +R GM+Q E L + +SN E RT+P ++ +VT D I G Sbjct: 5 AKVREMRIKSGMTQKEVAMNLNVTPGYISNVENNRTVPSLRLLSYFAKVTGMTFDEIVGG 64 Query: 176 DE 177 + Sbjct: 65 KK 66 >gi|284044033|ref|YP_003394373.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948254|gb|ADB50998.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 182 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 28/77 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G R++ R+ T +A + ++ E G+ S S+ L L ++ Sbjct: 4 EQIGERLRAARQRQELTLSALAERVELTKGFLSQVERGLTSPSVGSLLRLCEVLDLPVGE 63 Query: 90 IYDGEVIDRRYEDVTNK 106 ++D + Sbjct: 64 LFDANPAPLVRAAERSP 80 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 38/79 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + P IG RL++ R+ + ++ + + + LS E+G T P + ++ +V Sbjct: 1 MTPEQIGERLRAARQRQELTLSALAERVELTKGFLSQVERGLTSPSVGSLLRLCEVLDLP 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 + ++ + + ++ +R+ Sbjct: 61 VGELFDANPAPLVRAAERS 79 >gi|290894331|ref|ZP_06557297.1| predicted protein [Listeria monocytogenes FSL J2-071] gi|290556150|gb|EFD89698.1| predicted protein [Listeria monocytogenes FSL J2-071] Length = 237 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AI +L+ RK K +Q + +G+ + +E+ +IP +K + I +V +D+ Sbjct: 1 MAIHMKLREERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKSICRVFDITMDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + + +K K + Sbjct: 61 LIKDEVDTKDNQLKYMKLGKD 81 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++++ RK TQ +A V +E +++ + ++I+ D++ Sbjct: 3 IHMKLREERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKSICRVFDITMDYLI 62 Query: 92 DGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 E ++ K LD + IRK +S+ E Sbjct: 63 KDEVDTKDNQLKYMKLGKDILDLANERYPIDFIRKYHIISKEEI 106 >gi|254719904|ref|ZP_05181715.1| hypothetical protein Bru83_10224 [Brucella sp. 83/13] gi|265984912|ref|ZP_06097647.1| transcriptional regulatory protein [Brucella sp. 83/13] gi|264663504|gb|EEZ33765.1| transcriptional regulatory protein [Brucella sp. 83/13] Length = 75 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +R+ TQ+++ + + ++ E G + ++ L +S Sbjct: 4 RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHV 63 Query: 89 WIYDGEVIDRR 99 ++ + Sbjct: 64 ELFKPDEKSES 74 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R++KG++Q + G LS EQGR P + ++ Q ++ DE Sbjct: 13 RLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHVELFKPDEKS 72 Query: 180 VPK 182 Sbjct: 73 ESS 75 >gi|296128274|ref|YP_003635524.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296020089|gb|ADG73325.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 63 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++++R A +Q+E+A VN E G S+ A+ + +++ + + I+ Sbjct: 5 VRELRLAAGLSQRELAEALGVSRQTVNSIETGRYDPSLPLAIAIARQFQRAVEEIFH 61 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R G+SQ E + LG+ T+++ E GR P + A I + ++ ++ I+ Sbjct: 1 MENDVRELRLAAGLSQRELAEALGVSRQTVNSIETGRYDPSLPLAIAIARQFQRAVEEIF 60 Query: 174 FGD 176 D Sbjct: 61 HVD 63 >gi|226325617|ref|ZP_03801135.1| hypothetical protein COPCOM_03430 [Coprococcus comes ATCC 27758] gi|225205741|gb|EEG88095.1| hypothetical protein COPCOM_03430 [Coprococcus comes ATCC 27758] Length = 154 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 35/85 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + ++ +IK R + +Q+E+A ++ +EN I L L + + +S D Sbjct: 19 YMELSIQIKKYRTELHLSQEELAEKVYVTRQTISNWENEKSYPDIHSLLLLSSLFNVSLD 78 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYA 113 + G++ + + + Y Sbjct: 79 QLIKGDIEKMKEIISEQEIKKFNYY 103 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 37/82 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + + ++K R + +SQ E + + + T+SN+E ++ P+I + + L Sbjct: 18 NYMELSIQIKKYRTELHLSQEELAEKVYVTRQTISNWENEKSYPDIHSLLLLSSLFNVSL 77 Query: 170 DWIYFGDEVIVPKSIKRAKGNQ 191 D + GD + + I + + Sbjct: 78 DQLIKGDIEKMKEIISEQEIKK 99 >gi|160932466|ref|ZP_02079856.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753] gi|156868425|gb|EDO61797.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753] Length = 114 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG+R K R+ + TQ+ +A + ++ E G+ S+ + + NE + D Sbjct: 8 KAVGSRFKQYREQSGLTQETLAEKVGLSPNYISAIERGVNFPSLEKLILIINEIGATADQ 67 Query: 90 IYDGEVIDRRYED 102 I+ + + Sbjct: 68 IFTDVIKNTYQTR 80 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ + A+G+R K R+ G++Q + +G+ + +S E+G P ++ I Sbjct: 2 NEKFNKKAVGSRFKQYREQSGLTQETLAEKVGLSPNYISAIERGVNFPSLEKLILIINEI 61 Query: 166 KKHLDWIYFG 175 D I+ Sbjct: 62 GATADQIFTD 71 >gi|15802455|ref|NP_288481.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 EDL933] gi|12516142|gb|AAG57035.1|AE005422_10 putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. EDL933] Length = 196 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G R+K +RK TQ E+ + + +E + + L + Sbjct: 2 MESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTES 61 Query: 89 WIYDG 93 ++ G Sbjct: 62 YLLYG 66 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 37/79 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RKDKG++Q+E GKL G+ T+ +E+ P K K+ Q ++ +G Sbjct: 9 LKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLLYGVS 68 Query: 178 VIVPKSIKRAKGNQSSKKS 196 ++ G + S Sbjct: 69 SPELSFVQSTSGTKIPYLS 87 >gi|152975886|ref|YP_001375403.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024638|gb|ABS22408.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 64 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK +RK +Q E+A N +N EN S+ A + N + D ++ Sbjct: 3 NNIKSLRKVQKISQDELANLCNVSRQTINAIENNKYDPSLVLAFSIANYLNVKVDELF 60 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +KS+RK + +SQ E L + T++ E + P + A I +D ++ Sbjct: 1 MENNIKSLRKVQKISQDELANLCNVSRQTINAIENNKYDPSLVLAFSIANYLNVKVDELF 60 Query: 174 FGDE 177 ++ Sbjct: 61 VFNK 64 >gi|89895073|ref|YP_518560.1| hypothetical protein DSY2327 [Desulfitobacterium hafniense Y51] gi|219669485|ref|YP_002459920.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89334521|dbj|BAE84116.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539745|gb|ACL21484.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 121 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 1/115 (0%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I+ +R+ + Q+++A + + E G C R + L + Y++S D++ G Sbjct: 8 IRGLREDKDLRQRDIAEVIGTTQQHYSRCEQGECDLQTRAIIKLADFYDVSTDYLL-GRT 66 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 R+ D N+ + Y G L + + + + +G+ YE Sbjct: 67 ECRQGIDALNQSVVGAYTTGRLLTEVLSLNNIGRHAVIEYIGLQKLKEKVYETRE 121 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ +R+DK + Q + +++G S EQG + + K+ D Sbjct: 1 MKKSYEIIRGLREDKDLRQRDIAEVIGTTQQHYSRCEQGECDLQTRAIIKLADFYDVSTD 60 Query: 171 WIYFGDE 177 ++ E Sbjct: 61 YLLGRTE 67 >gi|312866496|ref|ZP_07726714.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098190|gb|EFQ56416.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 230 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ RK+ G+SQ + + LG+ + N+E G+T P K K+ ++ + + + Sbjct: 1 MFSVEKLKNRRKELGLSQADVARQLGISRPSYFNWENGKTKPNQKNWTKLSKILQVNPSY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 E++ + N+S+KK D Sbjct: 61 FLSEYEIVETYV----QLNKSNKKKTVD 84 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 29/85 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ RK +Q ++A + +ENG + + L +++ + Sbjct: 5 EKLKNRRKELGLSQADVARQLGISRPSYFNWENGKTKPNQKNWTKLSKILQVNPSYFLSE 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 I Y + + RL Sbjct: 65 YEIVETYVQLNKSNKKKTVDFANRL 89 >gi|229035317|ref|ZP_04189225.1| HTH-type transcriptional regulator ansR [Bacillus cereus AH1271] gi|228727997|gb|EEL79065.1| HTH-type transcriptional regulator ansR [Bacillus cereus AH1271] Length = 125 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|239623932|ref|ZP_04666963.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239521963|gb|EEQ61829.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 242 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 34/68 (50%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +G RI+ RKA T +++A ++ ++V+ +ENG + + + + Sbjct: 1 MSKINEHIGGRIRMYRKARELTLQQLADLIHKSRASVSKYENGEITLDVETLSEIADVLM 60 Query: 85 ISFDWIYD 92 +S + D Sbjct: 61 VSPGQLMD 68 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ RK + ++ + L+ +++S YE G +++ +I V + Sbjct: 12 IRMYRKARELTLQQLADLIHKSRASVSKYENGEITLDVETLSEIADVLMVSPGQLM 67 >gi|239617008|ref|YP_002940330.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF 19.5.1] gi|239505839|gb|ACR79326.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF 19.5.1] Length = 69 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 114 IGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K +R KG ++Q E + +G+ T+ E+G+ P +K A KI +V ++ + Sbjct: 1 MVNYIKKVRITKGEITQEELARRVGVTRQTIIYIEKGKFNPSVKLALKIAKVLGCSVEEL 60 Query: 173 YFGDE 177 + +E Sbjct: 61 FELEE 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 36 IKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 IK +R TQ+E+A + E G + S++ AL + S + +++ E Sbjct: 5 IKKVRITKGEITQEELARRVGVTRQTIIYIEKGKFNPSVKLALKIAKVLGCSVEELFELE 64 Query: 95 VID 97 D Sbjct: 65 EGD 67 >gi|170691179|ref|ZP_02882345.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170144428|gb|EDT12590.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 230 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 31/82 (37%) Query: 10 SLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 S Q IT D+G R++ R++ + T + + S ++ ENG+ Sbjct: 14 SQTKQQLMDTHITKPAEPLTTDLGRRVRAARQSQDLTLETASRLCGVSRSTLSKVENGLM 73 Query: 70 STSIRYALYLRNEYEISFDWIY 91 S + + +I ++ Sbjct: 74 SPTFDVLQKIVLGLKIEIGELF 95 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 10/94 (10%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIG----------ARLKSIRKDKGMSQIEFGKLLGMP 139 + + T ++ +D + R+++ R+ + ++ +L G+ Sbjct: 2 LLSETRNTIALQSQTKQQLMDTHITKPAEPLTTDLGRRVRAARQSQDLTLETASRLCGVS 61 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 STLS E G P +KI K + ++ Sbjct: 62 RSTLSKVENGLMSPTFDVLQKIVLGLKIEIGELF 95 >gi|170016383|ref|YP_001727302.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803240|gb|ACA81858.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 258 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 5/128 (3%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +++IR N TQ + A V+ +E G+ + + N +++ + Sbjct: 10 LQNIRTKQNLTQVDFAEKIFVSRQTVSNWERGISIPPVTALSIIANTFDVPLTQLLSALD 69 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 ++ + +++L A L + + G+ P Sbjct: 70 GEQANREHAAERQLIVEAFLTLLHRHNGQYSTIDLIIAE-SGIDYEHAITLFN---SPS- 124 Query: 156 KPARKIKQ 163 + I Q Sbjct: 125 AILQYIAQ 132 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I L++IR + ++Q++F + + + T+SN+E+G +IP + I Sbjct: 1 MKFNTIQHTLQNIRTKQNLTQVDFAEKIFVSRQTVSNWERGISIPPVTALSIIANTFDVP 60 Query: 169 LDWIYF---GDEVIVPKSIKR 186 L + G++ + +R Sbjct: 61 LTQLLSALDGEQANREHAAER 81 >gi|116515960|ref|YP_816408.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|148988506|ref|ZP_01819953.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|168491942|ref|ZP_02716085.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC0288-04] gi|225858871|ref|YP_002740381.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|289167945|ref|YP_003446214.1| transcriptional regulator [Streptococcus mitis B6] gi|116076536|gb|ABJ54256.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|147926187|gb|EDK77261.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|183217352|gb|ACC59271.1| antitoxin PezA [Streptococcus pneumoniae] gi|183573821|gb|EDT94349.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC0288-04] gi|213031122|emb|CAR31459.1| hypothetical protein [Streptococcus pneumoniae] gi|225721666|gb|ACO17520.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|288907512|emb|CBJ22349.1| transcriptional regulator [Streptococcus mitis B6] gi|319412015|emb|CBY91948.1| hypothetical protein [Streptococcus pneumoniae] Length = 158 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|52079512|ref|YP_078303.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52784877|ref|YP_090706.1| hypothetical protein BLi01105 [Bacillus licheniformis ATCC 14580] gi|52002723|gb|AAU22665.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52347379|gb|AAU40013.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 183 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K V IK +RK N + +++ + + E G S +I + N + Sbjct: 1 MNSIEKQVAENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQ 60 Query: 85 ISFDWI 90 +SF + Sbjct: 61 VSFTSL 66 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +K +RK + S + + G+ L+ E+G + P I KI + Sbjct: 10 ENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQVS 62 >gi|317501285|ref|ZP_07959488.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] gi|316897249|gb|EFV19317.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] Length = 209 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + K+ A+G LK Sbjct: 64 VSIEWL-KGETDEYETDITDKKELQIRDAMGDILKQF 99 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL-KGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 DEYETDITDKKE 85 >gi|313623993|gb|EFR94090.1| ans operon transcriptional repressor, putative [Listeria innocua FSL J1-023] Length = 131 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 36/102 (35%), Gaps = 1/102 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLDMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 D++ + I ++ + + +R + ++ Sbjct: 61 DYLLGQQSIPTYAPSELQGEKDIAKRMIKISEDLRYEDDLNL 102 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLDMVTQIATLYDVSVDYLL- 64 Query: 175 GDEVIVPKSIKRAKGNQSSKKS 196 G + I + +G + K Sbjct: 65 GQQSIPTYAPSELQGEKDIAKR 86 >gi|283768986|ref|ZP_06341892.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104343|gb|EFC05720.1| DNA-binding protein [Bulleidia extructa W1219] Length = 180 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK +R N+ T +E+A + ++ E S SI+ + ++ Sbjct: 3 NIGARIKQLRLKNDLTLEELASRTELTKGFLSQLERNRTSPSIQSLADVAEALGVNLSGF 62 Query: 91 YDGEVIDRRYEDVTN 105 + +V ++ + Sbjct: 63 FQEDVEEQIVFQEED 77 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IGAR+K +R ++ E + LS E+ RT P I+ + + +L Sbjct: 1 MINIGARIKQLRLKNDLTLEELASRTELTKGFLSQLERNRTSPSIQSLADVAEALGVNLS 60 Query: 171 WIYFGD 176 + D Sbjct: 61 GFFQED 66 >gi|268609658|ref|ZP_06143385.1| HTH domain protein [Ruminococcus flavefaciens FD-1] Length = 298 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 12/149 (8%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + RK TQ+++A+ N AV+ +EN + E IS D ++ Sbjct: 9 KNLVKRRKELGLTQEQLAVRLNVSPQAVSKWEN-SSYPDGELLPRIARELNISLDALFGI 67 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG-----KLLG-MPNSTLSNYE 147 ++ + + + ++ K M + G + + +E Sbjct: 68 KIENNERDIEKLVSDEMRITPPEK-RAELFMKLMYSAMYAYNPNTDKTGRLSDDY--EHE 124 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 I + A I + K L + +F + Sbjct: 125 NFAGI-KADDAISIAR-LNKDLRYFFFLE 151 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L RK+ G++Q + L + +S +E + P+ + +I + LD ++ Sbjct: 7 FRKNLVKRRKELGLTQEQLAVRLNVSPQAVSKWENS-SYPDGELLPRIARELNISLDALF 65 Query: 174 FGDEVIVPKSIKR 186 + I++ Sbjct: 66 GIKIENNERDIEK 78 >gi|228952164|ref|ZP_04114256.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229189879|ref|ZP_04316889.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228593553|gb|EEK51362.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228807518|gb|EEM54045.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 404 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ ++A G+ +S ++ ENG + S++ Y+ ++ E ++ Sbjct: 4 LGEKIKTLRKEKKLTQTDLA-GSELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + ++ +K + Sbjct: 63 EEDDVEIVGLIQQTEKLI 80 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + I++ + + K +K D+ Sbjct: 65 DDVEIVGLIQQTE--KLIKANKYDE 87 >gi|257413954|ref|ZP_04744773.2| transcriptional regulator [Roseburia intestinalis L1-82] gi|257201706|gb|EEU99990.1| transcriptional regulator [Roseburia intestinalis L1-82] Length = 170 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I+ +RK +Q+++A V+ +E+G + + + ++ + + Sbjct: 28 LSDNIQLLRKRAGMSQEQLAELTETSRQTVSKWESGESIPDVIACDRMAEAFGVALEDML 87 Query: 92 DGEVIDRRYEDVTNKKRL 109 E ++ K + Sbjct: 88 HYEEKNKSLPLPPKGKHM 105 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 ++ + + ++ +RK GMSQ + +L T+S +E G +IP+ Sbjct: 9 KYEKYEMYENTRGDGRKNMLSDNIQLLRKRAGMSQEQLAELTETSRQTVSKWESGESIPD 68 Query: 155 IKPARKIKQVTKKHLDWIYFGDE 177 + ++ + L+ + +E Sbjct: 69 VIACDRMAEAFGVALEDMLHYEE 91 >gi|255655753|ref|ZP_05401162.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451015|ref|ZP_06892760.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879020|ref|ZP_06903017.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260146|gb|EFH06996.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429973|gb|EFH15823.1| DNA-binding protein [Clostridium difficile NAP07] Length = 181 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 71/176 (40%), Gaps = 15/176 (8%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I ++RK N + +++A A+ S ++ E G+ + S+ + + + Sbjct: 5 NLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLFTF 64 Query: 91 YDGEVIDRR-YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + EV + N+K++ + I +EF ++ + +T S ++ Sbjct: 65 FVSEVDKKNLIVRHNNRKKVILPGSKNVVYEILIPDSSGNLEFA-IMNLAPNTSSCVDRI 123 Query: 150 RTIPEIKPARKIKQVTK------KHLDW--IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + +I V + D ++ GD V VP K N S+ +SK Sbjct: 124 THNGD-----EIAYVLEGEVKLFMDDDEFTLFKGDSVKVPLGTKHKWQNDSNSESK 174 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++ +RK + +S + KL + S LS E+G P + + I Sbjct: 1 MNDLNLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F EV I R + Sbjct: 61 L-FTFFVSEVDKKNLIVRHNNRKK 83 >gi|220930159|ref|YP_002507068.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000487|gb|ACL77088.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 133 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK +R ++QKE+A + A++ +E G + + +S D++ Sbjct: 6 ERIKSLRNVKGQSQKEVAEALGKSREAISKYELGEREPDPDVIVQFSQHFNVSSDYML 63 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y + R+KS+R KG SQ E + LG +S YE G P+ + Q D Sbjct: 1 MYILPERIKSLRNVKGQSQKEVAEALGKSREAISKYELGEREPDPDVIVQFSQHFNVSSD 60 Query: 171 WIY 173 ++ Sbjct: 61 YML 63 >gi|218896313|ref|YP_002444724.1| transcriptional regulator SinR [Bacillus cereus G9842] gi|218541453|gb|ACK93847.1| transcriptional regulator SinR [Bacillus cereus G9842] Length = 107 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK +R + E+A A +S ++ E + I++ + +I D + Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPFIQFLEKIAAVLQIPVDTL 61 Query: 91 YDGEVIDRRYEDVTNKK----RLDPYAIGARLKSIRKDKGMSQIE 131 E D + ++ + + + Q + Sbjct: 62 LHDETTKATNLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQ 106 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R KG+S E + G+ S +S+ E+ + P I+ KI V + +D Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPFIQFLEKIAAVLQIPVDT 60 Query: 172 IYFGD 176 + + Sbjct: 61 LLHDE 65 >gi|146302279|ref|YP_001196870.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156697|gb|ABQ07551.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 76 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++GT I+ +R+ +Q+++A + + E +T I+ + + N + Sbjct: 5 EETFIINLGTHIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIANALD 64 Query: 85 ISFDWIY 91 I + Sbjct: 65 IELADLL 71 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R+ +G+SQ + G+P + + E+ + IK +I L + Sbjct: 15 HIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIANALDIELADLL 71 >gi|127514555|ref|YP_001095752.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126639850|gb|ABO25493.1| transcriptional regulator, XRE family [Shewanella loihica PV-4] Length = 65 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N TQ ++A + +N E G S+ A + +++ + I++ Sbjct: 3 NRLKPLRAERNWTQADLAGLLDVSRQTINAIEKGKYDPSLPLAFKIARLFQLPIEAIFEE 62 Query: 94 EV 95 + Sbjct: 63 DE 64 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 35/64 (54%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + LL + T++ E+G+ P + A KI ++ + ++ I+ Sbjct: 1 MKNRLKPLRAERNWTQADLAGLLDVSRQTINAIEKGKYDPSLPLAFKIARLFQLPIEAIF 60 Query: 174 FGDE 177 DE Sbjct: 61 EEDE 64 >gi|322411261|gb|EFY02169.1| Hypothetical phage associated protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 169 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 30/88 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQ+ +A + +ENG A L + + +S ++ Sbjct: 2 NRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQTLADFFGVSVGYLLGF 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ E L + Sbjct: 62 GTVEEELEKNRRDMISQWKKESDALLEL 89 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +RK+KG++Q +G+ TL N+E G+ + A+ + + ++ Sbjct: 1 MNRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQTLADFFGVSVGYLL- 59 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKD 199 G + + K + S K + D Sbjct: 60 GFGTVEEELEKNRRDMISQWKKESD 84 >gi|311279020|ref|YP_003941251.1| Cupin 2 conserved barrel domain-containing protein [Enterobacter cloacae SCF1] gi|308748215|gb|ADO47967.1| Cupin 2 conserved barrel domain protein [Enterobacter cloacae SCF1] Length = 185 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDEL 85 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 4 DGLAPGKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 Query: 170 DWIYFGDEVIVPKSI 184 + E + Sbjct: 64 SEFFAEPEKPDEPQV 78 >gi|304570593|ref|YP_389834.2| hypothetical protein Dde_3345 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 161 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK IR QKE A ++ + +E + + + + + ISFDW+ Sbjct: 3 VGNRIKQIRGR--IPQKEFAATLGIAQNTLGGYERDERTPNAEVIVSIAKVFNISFDWLL 60 Query: 92 DGE 94 GE Sbjct: 61 TGE 63 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G R+K IR + Q EF LG+ +TL YE+ P + I +V DW Sbjct: 1 MSVGNRIKQIRGR--IPQKEFAATLGIAQNTLGGYERDERTPNAEVIVSIAKVFNISFDW 58 Query: 172 IYFGD 176 + G+ Sbjct: 59 LLTGE 63 >gi|295101707|emb|CBK99252.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 280 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE--NGMCSTSIRYALYLRNEYEISFDW 89 +G R+KD+R A T +++A +SA+ +E NG S L L + Y +S D+ Sbjct: 7 IGERLKDLRTAQKLTLEQLAAEVGISKSALGKYESDNGK-DISPYSILVLADYYGVSCDY 65 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + G + + + + A LK+ + + + Sbjct: 66 LM-GRTETKNHPNTALHELHLSDASIDVLKTGKFNHRLLSELICHK 110 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 1/64 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R + ++ + +G+ S L YE + D++ Sbjct: 9 ERLKDLRTAQKLTLEQLAAEVGISKSALGKYESDNGKDISPYSILVLADYYGVSCDYLMG 68 Query: 175 GDEV 178 E Sbjct: 69 RTET 72 >gi|284055653|pdb|3JXB|C Chain C, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c gi|284055654|pdb|3JXB|D Chain D, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c gi|284055657|pdb|3JXC|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9t In The Presence Of Tl+ gi|284055658|pdb|3JXC|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9t In The Presence Of Tl+ gi|284055661|pdb|3JXD|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c In The Presence Of Rb+ gi|284055662|pdb|3JXD|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c In The Presence Of Rb+ Length = 67 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L + S D++ Sbjct: 5 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL 64 Query: 92 DGE 94 G+ Sbjct: 65 KGD 67 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R+++ RK + Q GK++G+ N +S +E+ T P + + + + D++ Sbjct: 5 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL 64 Query: 174 FGD 176 GD Sbjct: 65 KGD 67 >gi|255525979|ref|ZP_05392904.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255510319|gb|EET86634.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 182 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ +K +R T +E + ++ + E G + +I + ISF + Sbjct: 7 NIGSVLKRVRFERELTLEETSNLTGVSKAMLGQIERGESNPTISILWKISTGLRISFSEL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 E D + + + + + L Sbjct: 67 LGSENDDYKAVSIDDIEPVYESDGKMIL 94 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y IG+ LK +R ++ ++ E L G+ + L E+G + P I KI + Sbjct: 6 YNIGSVLKRVRFERELTLEETSNLTGVSKAMLGQIERGESNPTISILWKISTGLRISFSE 65 Query: 172 IYFGD 176 + + Sbjct: 66 LLGSE 70 >gi|254719247|ref|ZP_05181058.1| hypothetical protein Bru83_06846 [Brucella sp. 83/13] gi|265984243|ref|ZP_06096978.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837996|ref|ZP_07470854.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] gi|264662835|gb|EEZ33096.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306406920|gb|EFM63141.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] Length = 478 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G +I++IR+ + TQ A S +N EN S L L Y+I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDI 63 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGP 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|228955292|ref|ZP_04117300.1| hypothetical protein bthur0006_46500 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961271|ref|ZP_04122890.1| hypothetical protein bthur0005_47190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229049716|ref|ZP_04194273.1| hypothetical protein bcere0027_46740 [Bacillus cereus AH676] gi|229072514|ref|ZP_04205716.1| hypothetical protein bcere0025_46750 [Bacillus cereus F65185] gi|229082273|ref|ZP_04214736.1| hypothetical protein bcere0023_48900 [Bacillus cereus Rock4-2] gi|229112472|ref|ZP_04242009.1| hypothetical protein bcere0018_47120 [Bacillus cereus Rock1-15] gi|229130284|ref|ZP_04259243.1| hypothetical protein bcere0015_47200 [Bacillus cereus BDRD-Cer4] gi|229142358|ref|ZP_04270877.1| hypothetical protein bcere0013_54400 [Bacillus cereus BDRD-ST26] gi|229147576|ref|ZP_04275921.1| hypothetical protein bcere0012_47030 [Bacillus cereus BDRD-ST24] gi|229153219|ref|ZP_04281398.1| hypothetical protein bcere0011_47490 [Bacillus cereus m1550] gi|229181321|ref|ZP_04308651.1| hypothetical protein bcere0005_46630 [Bacillus cereus 172560W] gi|229193309|ref|ZP_04320259.1| hypothetical protein bcere0002_49550 [Bacillus cereus ATCC 10876] gi|228590110|gb|EEK47979.1| hypothetical protein bcere0002_49550 [Bacillus cereus ATCC 10876] gi|228602214|gb|EEK59705.1| hypothetical protein bcere0005_46630 [Bacillus cereus 172560W] gi|228630318|gb|EEK86968.1| hypothetical protein bcere0011_47490 [Bacillus cereus m1550] gi|228635866|gb|EEK92351.1| hypothetical protein bcere0012_47030 [Bacillus cereus BDRD-ST24] gi|228641128|gb|EEK97440.1| hypothetical protein bcere0013_54400 [Bacillus cereus BDRD-ST26] gi|228653217|gb|EEL09096.1| hypothetical protein bcere0015_47200 [Bacillus cereus BDRD-Cer4] gi|228670852|gb|EEL26159.1| hypothetical protein bcere0018_47120 [Bacillus cereus Rock1-15] gi|228700705|gb|EEL53228.1| hypothetical protein bcere0023_48900 [Bacillus cereus Rock4-2] gi|228710490|gb|EEL62463.1| hypothetical protein bcere0025_46750 [Bacillus cereus F65185] gi|228722629|gb|EEL74017.1| hypothetical protein bcere0027_46740 [Bacillus cereus AH676] gi|228798392|gb|EEM45386.1| hypothetical protein bthur0005_47190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804425|gb|EEM51036.1| hypothetical protein bthur0006_46500 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 79 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFN 61 Query: 85 ISFDWIYD 92 + + I+ Sbjct: 62 VPVEEIFT 69 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI Q+ Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIF 60 Query: 166 KKHLDWIYF---GDEVIVP 181 ++ I+ G+E Sbjct: 61 NVPVEEIFTLVEGEEDDEE 79 >gi|157149791|ref|YP_001450164.1| Cro/CI family transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|28461301|gb|AAO43830.1| Cro/CI family transcriptional regulator [Streptococcus gordonii] gi|157074585|gb|ABV09268.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii str. Challis substr. CH1] Length = 69 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK+IR+D M+Q E +G+ T+ + E R P ++ A KI +V ++ I+ + Sbjct: 7 NLKAIREDARMTQQELADKIGVRRETILHLENNRYNPSLEMALKIARVFGMSVEDIFRLN 66 Query: 177 EVI 179 E + Sbjct: 67 EEV 69 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K IR+ TQ+E+A + EN + S+ AL + + +S + I+ Sbjct: 7 NLKAIREDARMTQQELADKIGVRRETILHLENNRYNPSLEMALKIARVFGMSVEDIFR 64 >gi|312277953|gb|ADQ62610.1| transcriptional regulator, XRE family [Streptococcus thermophilus ND03] Length = 65 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R ++ TQ ++A + L E G + S+ + + + + D ++ Sbjct: 6 RLKAARAEHDMTQGDLAEAIGATRQTIGLIEAGKYNPSLALCIAICKTLDRTLDQLF 62 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RLK+ R + M+Q + + +G T+ E G+ P + I + + LD Sbjct: 1 MAKNLRLKAARAEHDMTQGDLAEAIGATRQTIGLIEAGKYNPSLALCIAICKTLDRTLDQ 60 Query: 172 IYFGD 176 +++ D Sbjct: 61 LFWED 65 >gi|306838790|ref|ZP_07471622.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306406126|gb|EFM62373.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 73 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +R+ TQ+++ + + ++ E G + ++ L +S Sbjct: 2 RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHV 61 Query: 89 WIYDGEVIDRR 99 ++ + Sbjct: 62 ELFKPDEKSES 72 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R++KG++Q + G LS EQGR P + ++ Q ++ DE Sbjct: 11 RLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHVELFKPDEKS 70 Query: 180 VPK 182 Sbjct: 71 ESS 73 >gi|228994457|ref|ZP_04154318.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] gi|228765282|gb|EEM13975.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] Length = 410 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 7/140 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI +R T E+A G + +++ ENG + S+ ++ ++ ++ Sbjct: 6 ELGKRINKLRVEKGMTLVELA-GNKMSKGMLSMIENGHSNPSMDSLKFIAHQLGCDPQYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI-----EFGKLLGMPNSTLSN 145 D + ++ ++ + Q E ++L + + Sbjct: 65 LGSSTSDELKHLFNKVEEAFEKNNDEQIINL-TQDMLDQQFPISFESARILEISGRVVMK 123 Query: 146 YEQGRTIPEIKPARKIKQVT 165 EQ R I+ A I + Sbjct: 124 SEQKRGEILIERAVAIYERL 143 Score = 43.0 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L +G R+ +R +KGM+ +E M LS E G + P + + I Sbjct: 1 MLKMNELGKRINKLRVEKGMTLVELAGN-KMSKGMLSMIENGHSNPSMDSLKFIAHQLGC 59 Query: 168 HLDWIY 173 ++ Sbjct: 60 DPQYLL 65 >gi|226330186|ref|ZP_03805704.1| hypothetical protein PROPEN_04099 [Proteus penneri ATCC 35198] gi|225200981|gb|EEG83335.1| hypothetical protein PROPEN_04099 [Proteus penneri ATCC 35198] Length = 94 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 26/76 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI R+ T ++A + + +E G S+ + + S +W + Sbjct: 14 IGNRISKKRREQGWTGNQVASLLGISQQQFSRYERGRNQISVYQLMKISRILNTSINWFF 73 Query: 92 DGEVIDRRYEDVTNKK 107 D N K Sbjct: 74 DDYEKIDSSTGEINLK 89 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 N K IG R+ R+++G + + LLG+ S YE+GR + K Sbjct: 1 MIDKNIKLSINEVIGNRISKKRREQGWTGNQVASLLGISQQQFSRYERGRNQISVYQLMK 60 Query: 161 IKQVTKKHLDWIYFGDEVIVPKS 183 I ++ ++W + E I + Sbjct: 61 ISRILNTSINWFFDDYEKIDSST 83 >gi|150398411|ref|YP_001328878.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029926|gb|ABR62043.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 125 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G ++++R+ TQKEMA + ++ E+G + S + + + + +D Sbjct: 4 FGEAVRELRRRKGVTQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNVIWDE 62 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 G ++ +R+ KG++Q E +G+ + LS E G+ P +++ Sbjct: 1 MTPFGEAVRELRRRKGVTQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNVIW 60 Query: 168 -HLDWIYFGDEVIVPKSIKRAKG 189 D ++ + PK + G Sbjct: 61 DEADELFRIAHISDPKVVLDTSG 83 >gi|15612908|ref|NP_241211.1| transcriptional regulator (phage-related) [Bacillus halodurans C-125] gi|10172958|dbj|BAB04064.1| transcriptional regulator (phage-related) [Bacillus halodurans C-125] Length = 116 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ R++++R A+N TQ+E+A N ESA +E G SI L +Y +S Sbjct: 1 MAELKDRLRELRNAHNLTQQEVASFLNITESAYGFYEQGRNEPSIGKLKQLAQKYNVSIA 60 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 ++ Y + + + Sbjct: 61 FLAGETDAKEPYANSSVHEH 80 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL+ +R ++Q E L + S YEQGR P I +++ Q + Sbjct: 1 MAELKDRLRELRNAHNLTQQEVASFLNITESAYGFYEQGRNEPSIGKLKQLAQKYNVSIA 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ + P + + S K K Sbjct: 61 FLAGETDAKEPYANSSVHEHPLSYKYKD 88 >gi|150390025|ref|YP_001320074.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949887|gb|ABR48415.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 64 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +RK Q+++A + EN + ++ A+ L + + + ++ Sbjct: 3 NKLKTLRKELGLRQEDVANQLGVTRQTIIAIENDKYNPTLELAMKLARFLDTTVEELFQL 62 Query: 94 EV 95 E Sbjct: 63 EN 64 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK++RK+ G+ Q + LG+ T+ E + P ++ A K+ + ++ ++ Sbjct: 1 MKNKLKTLRKELGLRQEDVANQLGVTRQTIIAIENDKYNPTLELAMKLARFLDTTVEELF 60 >gi|46206109|ref|ZP_00210190.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 191 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 26/75 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R A T +A S ++ E G ++ + + + D + + Sbjct: 13 QRIRGLRLARGWTLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQLVEP 72 Query: 94 EVIDRRYEDVTNKKR 108 + ++R Sbjct: 73 VDDEDVVIRPEPQRR 87 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R++ +R +G + + STLS E G + I + LD + Sbjct: 10 VVRQRIRGLRLARGWTLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQL 69 Query: 173 YF----GDEVIVPKSIKR 186 D VI P+ +R Sbjct: 70 VEPVDDEDVVIRPEPQRR 87 >gi|323691263|ref|ZP_08105538.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323504603|gb|EGB20390.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 126 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIKD+R + T ++ ++A++ E G S + + + E+ + + W+ Sbjct: 4 GERIKDVRNSLGLTLEKFGEKLGVTKTAISRLEKGERSLTEQMTKSICREFSVDYMWLTT 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGAR 117 GE D +R+D G Sbjct: 64 GEGEMFVETDDDFFERIDRIMAGEN 88 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +R G++ +FG+ LG+ + +S E+G + + I + W+ G Sbjct: 5 ERIKDVRNSLGLTLEKFGEKLGVTKTAISRLEKGERSLTEQMTKSICREFSVDYMWLTTG 64 Query: 176 DEVI 179 + + Sbjct: 65 EGEM 68 >gi|288556482|ref|YP_003428417.1| DNA-binding protein XRE transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547642|gb|ADC51525.1| DNA-binding protein XRE transcriptional regulator [Bacillus pseudofirmus OF4] Length = 64 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R ++ +Q E+A + L E G + +++ L + + D ++ E Sbjct: 5 RLKIARTEHDLSQAELAKKVGVTRQTIGLIEAGKYNPTLQLCLAICKTLHKTLDELFWEE 64 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK R + +SQ E K +G+ T+ E G+ P ++ I + K LD +++ + Sbjct: 6 LKIARTEHDLSQAELAKKVGVTRQTIGLIEAGKYNPTLQLCLAICKTLHKTLDELFWEE 64 >gi|260439179|ref|ZP_05792995.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292808378|gb|EFF67583.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 140 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST-SIRYALYLRNEYEISFDWI 90 G RI+++R TQ ++A V +E G + L ++++ +++ Sbjct: 3 FGERIRELRTQKGLTQPQLADSIGVSVRTVKSYELGTSLPKTRETYQKLAEFFDVNINYL 62 Query: 91 YDGEVI 96 + Sbjct: 63 LAKDEQ 68 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI-KPARKIKQVTKKHLD 170 G R++ +R KG++Q + +G+ T+ +YE G ++P+ + +K+ + +++ Sbjct: 1 MTFGERIRELRTQKGLTQPQLADSIGVSVRTVKSYELGTSLPKTRETYQKLAEFFDVNIN 60 Query: 171 WIYFGDEVIV 180 ++ DE + Sbjct: 61 YLLAKDEQFI 70 >gi|255526983|ref|ZP_05393876.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185146|ref|ZP_06853556.1| cupin domain protein [Clostridium carboxidivorans P7] gi|255509342|gb|EET85689.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049980|gb|EFG89404.1| cupin domain protein [Clostridium carboxidivorans P7] Length = 181 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 36/79 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I+D+RK N T K+++ S ++ EN S +I + + ++ ++ Sbjct: 4 EIAQKIRDLRKEKNLTLKDLSNETGLSISFLSQVENNSSSLAITSLKKISDALGVNINYF 63 Query: 91 YDGEVIDRRYEDVTNKKRL 109 ++ ++ ++K Sbjct: 64 FEIPEVNNFLVKSEDEKPF 82 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +++ +RK+K ++ + G+ S LS E + I +KI ++++ Sbjct: 3 NEIAQKIRDLRKEKNLTLKDLSNETGLSISFLSQVENNSSSLAITSLKKISDALGVNINY 62 Query: 172 IYFGDEV 178 + EV Sbjct: 63 FFEIPEV 69 >gi|229044145|ref|ZP_04191828.1| Transcriptional regulator, XRE [Bacillus cereus AH676] gi|228725192|gb|EEL76466.1| Transcriptional regulator, XRE [Bacillus cereus AH676] Length = 177 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 13/124 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + S+ + + Sbjct: 12 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 71 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + S Sbjct: 72 INDIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNKQA---NTTES 128 Query: 142 TLSN 145 S+ Sbjct: 129 HYSH 132 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ D + Sbjct: 19 YRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFIND-IDT 77 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 78 DSLISKKKDRKKVYRENND 96 >gi|228478235|ref|ZP_04062843.1| conserved domain protein [Streptococcus salivarius SK126] gi|228249914|gb|EEK09184.1| conserved domain protein [Streptococcus salivarius SK126] Length = 65 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R ++ TQ ++A + L E G + S+ + + + + D ++ Sbjct: 6 RLKAARAEHDMTQGDLAEAVGATRQTIGLIEAGKYNPSLGLCIAICKTLDRTLDQLF 62 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RLK+ R + M+Q + + +G T+ E G+ P + I + + LD Sbjct: 1 MAKNLRLKAARAEHDMTQGDLAEAVGATRQTIGLIEAGKYNPSLGLCIAICKTLDRTLDQ 60 Query: 172 IYFG 175 +++ Sbjct: 61 LFWE 64 >gi|255036105|ref|YP_003086726.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254948861|gb|ACT93561.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 279 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWI 90 G+ I+ +R+ TQ++ A + E G + S + + + + +S D + Sbjct: 8 FGSNIRFLRERRRLTQEDFAEQLGVTRVKLAAIEAGRTENPSAVDLIKISDFFGLSIDNL 67 Query: 91 YDGEVIDRRYEDVTNKK 107 + ++ + + Sbjct: 68 FRIDLRGVGELPLRELE 84 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLD 170 G+ ++ +R+ + ++Q +F + LG+ L+ E GRT P KI +D Sbjct: 6 LFFGSNIRFLRERRRLTQEDFAEQLGVTRVKLAAIEAGRTENPSAVDLIKISDFFGLSID 65 Query: 171 WIYFGD 176 ++ D Sbjct: 66 NLFRID 71 >gi|218529602|ref|YP_002420418.1| phage repressor [Methylobacterium chloromethanicum CM4] gi|218521905|gb|ACK82490.1| putative phage repressor [Methylobacterium chloromethanicum CM4] Length = 244 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I++ RKA TQ ++A AV +E+G L + + Sbjct: 5 LGPVIREARKARGLTQGDIASALKISRPAVGQWESGDTGPDRDRLPALARLLRVDLGALT 64 Query: 92 DGE 94 +GE Sbjct: 65 NGE 67 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 31/66 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ RK +G++Q + L + + +E G T P+ + ++ + L + G+ Sbjct: 9 IREARKARGLTQGDIASALKISRPAVGQWESGDTGPDRDRLPALARLLRVDLGALTNGEL 68 Query: 178 VIVPKS 183 V++ + Sbjct: 69 VLLDQE 74 >gi|187477795|ref|YP_785819.1| phage repressor [Bordetella avium 197N] gi|115422381|emb|CAJ48906.1| Putative phage repressor [Bordetella avium 197N] Length = 360 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAI----GARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 + +++ + +T + A R+K +R+ + +S + +L+G+ T+ Sbjct: 2 LMQEKLVMQEIPAMTQDNLVVNLARMSTIHQRIKQLREQRQLSMEQLAELVGVSWQTVQQ 61 Query: 146 YEQGRTIPEIKPARKIKQVTKKHLDWIYFG--DEVIVPKSIKRAKGNQSSKKSKKDK 200 +E G+T P+ + + ++++ G E V SI A+ + +DK Sbjct: 62 WENGKTAPKRARLEAVAKALMTTVEYLAMGASSEGRVDSSISDARAPWPFQSIPEDK 118 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 25/66 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK +R+ + +++A V +ENG + + + +++ Sbjct: 30 IHQRIKQLREQRQLSMEQLAELVGVSWQTVQQWENGKTAPKRARLEAVAKALMTTVEYLA 89 Query: 92 DGEVID 97 G + Sbjct: 90 MGASSE 95 >gi|294813464|ref|ZP_06772107.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] gi|294326063|gb|EFG07706.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] Length = 457 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E+ +++G IK R+A +Q+E+A A S V E G + + + Sbjct: 34 EVGSMTQEIGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGL 93 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRL 109 ++ ++ + D K+ L Sbjct: 94 GVTTSALFVAGPPEPVVGDDATKQSL 119 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R+ +G+SQ E + G+ ST+ EQGR + I + ++ Sbjct: 45 NIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSALF 101 >gi|291539287|emb|CBL12398.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 209 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + K+ A+G LK + Sbjct: 64 VSIEWL-RGETDEYETDITDKKELQIRDAMGDILKQL 99 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL-RGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 DEYETDITDKKE 85 >gi|291530482|emb|CBK96067.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 209 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + K+ A+G LK + Sbjct: 64 VSIEWL-KGETDEYETDITDKKELQIRDAMGDILKQL 99 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL-KGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 DEYETDITDKKE 85 >gi|229015775|ref|ZP_04172754.1| hypothetical protein bcere0030_3620 [Bacillus cereus AH1273] gi|228745532|gb|EEL95555.1| hypothetical protein bcere0030_3620 [Bacillus cereus AH1273] Length = 83 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KDV +I ++R NN +Q +A +N EN S+ A L + D Sbjct: 17 RKDVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVD 76 Query: 89 WIYDGEV 95 ++ ++ Sbjct: 77 KLFLYKM 83 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 21 KNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|152964475|ref|YP_001360259.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151358992|gb|ABS01995.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 194 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 26/79 (32%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+ +R A + +A S ++ E G ++ + L + Sbjct: 2 EQDIDAIIRQRIRGLRLAKGWSLDALAARCFMSPSTLSRIETGHRRIALDQLVPLARALD 61 Query: 85 ISFDWIYDGEVIDRRYEDV 103 + D + D D Sbjct: 62 TTLDDLVDSGAEDDVVIRP 80 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I R++ +R KG S M STLS E G + + + LD + Sbjct: 9 IRQRIRGLRLAKGWSLDALAARCFMSPSTLSRIETGHRRIALDQLVPLARALDTTLDDLV 68 >gi|153953935|ref|YP_001394700.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854549|ref|YP_002471671.1| hypothetical protein CKR_1206 [Clostridium kluyveri NBRC 12016] gi|146346816|gb|EDK33352.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568273|dbj|BAH06257.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 179 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 31/79 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +I+ +R+ + + +++A A ++ E + S+ + +S ++ Sbjct: 2 EFGLKIRKLRQEKSISIEQLAERAKLSTGLISQVERNITGPSVTTLWKIAKALNVSINYF 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 +D +K + Sbjct: 62 FDEYEEKDNVVRKDKRKTI 80 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +++ +R++K +S + + + +S E+ T P + KI + +++ Sbjct: 1 MEFGLKIRKLRQEKSISIEQLAERAKLSTGLISQVERNITGPSVTTLWKIAKALNVSINY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + DE ++ R ++ Sbjct: 61 FF--DEYEEKDNVVRKDKRKT 79 >gi|108757722|ref|YP_635287.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108461602|gb|ABF86787.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 117 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + G ++ +R A TQ+ +A ++ A+ E G S S+ L ++S Sbjct: 13 RLHRRFGDHVRKLRTARELTQEALAERSDLSVDAIRRIERGSFSPSLDTLGKLSKGLDVS 72 Query: 87 FDWIYDGEVIDRRY 100 ++ G +R Sbjct: 73 LKTLFQGFERERSN 86 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 27/76 (35%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ +R + ++Q + + + E+G P + K+ + L Sbjct: 15 HRRFGDHVRKLRTARELTQEALAERSDLSVDAIRRIERGSFSPSLDTLGKLSKGLDVSLK 74 Query: 171 WIYFGDEVIVPKSIKR 186 ++ G E ++ Sbjct: 75 TLFQGFERERSNAVAE 90 >gi|49081740|gb|AAT50270.1| PA5301 [synthetic construct] Length = 183 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGARLRTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK 49 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KH 168 +GARL++IRK KG+SQ E K G+ NST+S E+ P I +K V Sbjct: 1 MDVGARLRTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK---VLGGIPMS 57 Query: 169 LDWIYFGD 176 L + D Sbjct: 58 LVEFFSLD 65 >gi|309792250|ref|ZP_07686722.1| helix-turn-helix domain-containing protein [Oscillochloris trichoides DG6] gi|308225791|gb|EFO79547.1| helix-turn-helix domain-containing protein [Oscillochloris trichoides DG6] Length = 181 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I +R+ T +E++ G+ S ++ E + S+ L + + + Sbjct: 3 LGQKIGRLRQERGLTLQEVSDGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTHFF 62 Query: 92 DGEV 95 +GE Sbjct: 63 EGED 66 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 32/69 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ +R+++G++ E G+ S LS E+ + + RK+ Q + Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSDGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTH 60 Query: 172 IYFGDEVIV 180 + G++ Sbjct: 61 FFEGEDSQQ 69 >gi|284801435|ref|YP_003413300.1| hypothetical protein LM5578_1188 [Listeria monocytogenes 08-5578] gi|284994577|ref|YP_003416345.1| hypothetical protein LM5923_1141 [Listeria monocytogenes 08-5923] gi|284056997|gb|ADB67938.1| hypothetical protein LM5578_1188 [Listeria monocytogenes 08-5578] gi|284060044|gb|ADB70983.1| hypothetical protein LM5923_1141 [Listeria monocytogenes 08-5923] Length = 237 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 36/81 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AI +LK RK K +Q + +G+ + +E+ +IP +K + I +V +D+ Sbjct: 1 MAIHMKLKEERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKSICRVFDITMDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + + +K K + Sbjct: 61 LIKDEVDTKDNQLKYMKLGKD 81 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 6/97 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K+ RK TQ +A V +E +++ + ++I+ D++ Sbjct: 3 IHMKLKEERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKSICRVFDITMDYLI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPY------AIGARLKSIR 122 EV + + K D +K R Sbjct: 63 KDEVDTKDNQLKYMKLGKDILDLANERYPIDFIKKYR 99 >gi|257455556|ref|ZP_05620786.1| phage repressor [Enhydrobacter aerosaccus SK60] gi|257447022|gb|EEV22035.1| phage repressor [Enhydrobacter aerosaccus SK60] Length = 222 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G+R+K RK TQ E+A + + A++ E+G +S + + + +S W Sbjct: 3 ETIGSRVKKARKYAGLTQVELAKKSGSKQGAISDLESGRNESSTK-LVEMAEAMGVSAKW 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + GE + + I +++ Sbjct: 62 LATGEGNMLDQDIKVPSIS-NVDFIPQKIRKA 92 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+K RK G++Q+E K G +S+ E GR K ++ + W+ G Sbjct: 7 SRVKKARKYAGLTQVELAKKSGSKQGAISDLESGRNESSTK-LVEMAEAMGVSAKWLATG 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + ++ + IK + +K +K+ Sbjct: 66 EGNMLDQDIKVPSISNVDFIPQKIRKAP 93 >gi|257068924|ref|YP_003155179.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Brachybacterium faecium DSM 4810] gi|256559742|gb|ACU85589.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Brachybacterium faecium DSM 4810] Length = 517 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Y +GT I+D R+ + TQ ++A +SAVN E G + ++ + + Sbjct: 9 ENEDYLSRIGTLIRDARQHSGLTQAQLASELGTSQSAVNRIEKGQQNLTLETLSKIGSAL 68 Query: 84 E 84 + Sbjct: 69 D 69 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 22/49 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ R+ G++Q + LG S ++ E+G+ ++ KI Sbjct: 21 IRDARQHSGLTQAQLASELGTSQSAVNRIEKGQQNLTLETLSKIGSALD 69 >gi|225856822|ref|YP_002738333.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|225725104|gb|ACO20956.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] Length = 158 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ + A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQHDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q +F +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQHDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|186972781|pdb|2R1J|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With The Synthetic Operator 9t gi|186972782|pdb|2R1J|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With The Synthetic Operator 9t Length = 68 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK Q + A++ +E + L L + S D++ Sbjct: 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL 65 Query: 92 DGE 94 G+ Sbjct: 66 KGD 68 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+++ RK + Q GK++G+ N +S +E+ T P + + + + Sbjct: 1 MNTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCS 60 Query: 169 LDWIYFGD 176 D++ GD Sbjct: 61 PDYLLKGD 68 >gi|325695196|gb|EGD37097.1| transcriptional regulator [Streptococcus sanguinis SK150] Length = 71 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFW 60 Query: 175 G 175 Sbjct: 61 E 61 >gi|322376588|ref|ZP_08051081.1| putative transcriptional regulator [Streptococcus sp. M334] gi|321282395|gb|EFX59402.1| putative transcriptional regulator [Streptococcus sp. M334] Length = 158 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|313884783|ref|ZP_07818537.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619982|gb|EFR31417.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 188 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K IR ++ +Q+++A +++ +E G S L + + +S+D I Sbjct: 4 DNLKRIRLEHDMSQEDLAQVMAVTRQSISKYEKGTAEPSFEKLAILVDYFNLSYDDILGQ 63 Query: 94 EVIDRRYEDVTNKK 107 E + + + Sbjct: 64 EKKQPAKKANLSGQ 77 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 1/86 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK IR + MSQ + +++ + ++S YE+G P + + D I Sbjct: 1 MFKDNLKRIRLEHDMSQEDLAQVMAVTRQSISKYEKGTAEPSFEKLAILVDYFNLSYDDI 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 G E P G K+ K Sbjct: 61 L-GQEKKQPAKKANLSGQAKLIKTTK 85 >gi|291551231|emb|CBL27493.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 209 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + K+ A+G LK + Sbjct: 64 VSIEWL-KGETDEYETDITDKKELQIRDAMGDILKQL 99 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL-KGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 DEYETDITDKKE 85 >gi|238925837|ref|YP_002939355.1| hypothetical protein EUBREC_3495 [Eubacterium rectale ATCC 33656] gi|238877514|gb|ACR77221.1| Hypothetical protein EUBREC_3495 [Eubacterium rectale ATCC 33656] gi|295098807|emb|CBK87896.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 209 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + K+ A+G LK + Sbjct: 64 VSIEWL-KGETDEYETDITDKKELQIRDAMGDILKQL 99 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL-KGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 DEYETDITDKKE 85 >gi|226328474|ref|ZP_03803992.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198] gi|225203207|gb|EEG85561.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198] Length = 102 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 28/85 (32%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + VG RIK RK T EM + + ENG ++ + + Sbjct: 1 MSELNTIVGQRIKQKRKQLKLTGIEMGRRLGISQQHYSRLENGHIKITVDQLITISYILG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 IS + + +K L Sbjct: 61 ISPQSLLLTSETMSPILNAWTEKTL 85 Score = 47.6 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K RK ++ IE G+ LG+ S E G + I + + Sbjct: 10 QRIKQKRKQLKLTGIEMGRRLGISQQHYSRLENGHIKITVDQLITISYILGISPQSLLLT 69 Query: 176 DEVIVP 181 E + P Sbjct: 70 SETMSP 75 >gi|210623634|ref|ZP_03293960.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275] gi|210153504|gb|EEA84510.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275] Length = 181 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R TQ+E+A + ++ EN + S SI + + + Sbjct: 4 EIGKKIKRLRIEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLKEF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ + + + K + Sbjct: 64 FNDTESEKIVFVKDDMFETEDEELKYEFKWL 94 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R +K ++Q E + +S E T P I I ++ +L Sbjct: 3 MEIGKKIKRLRIEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLKE 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + E +K ++ K + K Sbjct: 63 FFNDTESEKIVFVKDDMFETEDEELKYEFK 92 >gi|152998873|ref|YP_001364554.1| XRE family transcriptional regulator [Shewanella baltica OS185] gi|151363491|gb|ABS06491.1| transcriptional regulator, XRE family [Shewanella baltica OS185] Length = 191 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 25/83 (30%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + + A ++ + E G S +I + + + IS + Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTP 71 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 + + A L Sbjct: 72 QSQGTVFRKPDELRQQPATDGML 94 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK++R KG S + + G+ + + E+G + P I KI L Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 >gi|52787818|ref|YP_093647.1| AnsR [Bacillus licheniformis ATCC 14580] gi|163119714|ref|YP_081218.2| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|319648301|ref|ZP_08002518.1| AnsR protein [Bacillus sp. BT1B_CT2] gi|52350320|gb|AAU42954.1| AnsR [Bacillus licheniformis ATCC 14580] gi|145903225|gb|AAU25580.2| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|317389936|gb|EFV70746.1| AnsR protein [Bacillus sp. BT1B_CT2] Length = 115 Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 29/83 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +RK + + A +S +E+G S+ + + + + S D++ Sbjct: 4 DRLTTLRKNKKWSLQYTADRLGIAKSTYAGYESGYRRPSLEALIEIADLFNTSTDFLLGR 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGA 116 R + L +A Sbjct: 64 VDDPRDEKAKNEAIELTDWAKLK 86 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL ++RK+K S LG+ ST + YE G P ++ +I + D++ Sbjct: 1 MNLDRLTTLRKNKKWSLQYTADRLGIAKSTYAGYESGYRRPSLEALIEIADLFNTSTDFL 60 Query: 173 YFGDEVIVPKSIKR 186 + + K Sbjct: 61 LGRVDDPRDEKAKN 74 >gi|326802631|ref|YP_004320449.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651355|gb|AEA01538.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 69 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R + +QK +A VN+ EN + S+ + L + + ++ Sbjct: 2 NRLKYYRTRSGLSQKALAEEIGVARQTVNMIENDRYNPSLELCIALAKALDTDLNALF 59 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK R G+SQ + +G+ T++ E R P ++ + + L+ +++ Sbjct: 1 MNRLKYYRTRSGLSQKALAEEIGVARQTVNMIENDRYNPSLELCIALAKALDTDLNALFW 60 >gi|310780515|ref|YP_003968847.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309749838|gb|ADO84499.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 178 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 27/79 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK RK T K+++ ++ E S S+ + I+ I Sbjct: 3 NLGEKIKFCRKEKGLTLKKLSDMTGLSVGFISNIERNQNSPSVSNLQQICAALSINLMEI 62 Query: 91 YDGEVIDRRYEDVTNKKRL 109 ++K + Sbjct: 63 LQVNSDSSPVVKKEDRKEV 81 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 37/90 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K RK+KG++ + + G+ +SN E+ + P + ++I +L Sbjct: 1 MNNLGEKIKFCRKEKGLTLKKLSDMTGLSVGFISNIERNQNSPSVSNLQQICAALSINLM 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I + P K + S S K Sbjct: 61 EILQVNSDSSPVVKKEDRKEVFSSNSDHTK 90 >gi|217959909|ref|YP_002338465.1| DNA-binding protein [Bacillus cereus AH187] gi|229139101|ref|ZP_04267678.1| transcriptional regulator, possible MerR [Bacillus cereus BDRD-ST26] gi|217064097|gb|ACJ78347.1| DNA-binding protein [Bacillus cereus AH187] gi|228644456|gb|EEL00711.1| transcriptional regulator, possible MerR [Bacillus cereus BDRD-ST26] Length = 152 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 28/87 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RK N T +E A A S ++ E G + S+ + + ++ Sbjct: 6 LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E+ ++ + Sbjct: 66 INEIDTDSLISKKKDRKKVYRENSDHI 92 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ +E+ Sbjct: 13 YRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLFI-NEIDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENSD 90 >gi|302866395|ref|YP_003835032.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302569254|gb|ADL45456.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] Length = 255 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 4/82 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW-- 89 VG ++ R+ +Q ++AI A+ V+L E G S L L ++ + Sbjct: 6 VGELLRQWRQHRGLSQLDLAIAADVSARHVSLVETGKSKPSSDMILRLADQLHVPLRDRN 65 Query: 90 --IYDGEVIDRRYEDVTNKKRL 109 + G R E + L Sbjct: 66 RLLLAGGFAPRYAESPLDHNAL 87 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +G L+ R+ +G+SQ++ + +S E G++ P ++ Sbjct: 1 MIVHTVGELLRQWRQHRGLSQLDLAIAADVSARHVSLVETGKSKPSSDMILRLADQLHVP 60 Query: 169 L 169 L Sbjct: 61 L 61 >gi|326203819|ref|ZP_08193681.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985917|gb|EGD46751.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 115 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +R+ T+KE+A +S +E G + L + +E++ D++ Sbjct: 4 KRLIQLREEKKLTKKEVAEYLKIDQSTYGKYELGKREPDYEILVKLGDFFEVTTDYLL 61 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL +R++K +++ E + L + ST YE G+ P+ + K+ + D++ Sbjct: 1 MLTKRLIQLREEKKLTKKEVAEYLKIDQSTYGKYELGKREPDYEILVKLGDFFEVTTDYL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|28211116|ref|NP_782060.1| putative transcriptional regulatory protein [Clostridium tetani E88] gi|28203556|gb|AAO35997.1| putative transcriptional regulatory protein [Clostridium tetani E88] Length = 235 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 35/101 (34%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 T+I I + +K +R N + ++A + + ++ E G + +I Sbjct: 45 TIIGGYTIMNINSIIAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLW 104 Query: 78 YLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ + + + + D N + R+ Sbjct: 105 KIAKGLKVPYTSLLEQKKHDTYVIKKRNIEAQFTEEGHYRV 145 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%) Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 S+R N + ++F I VI I LK++R ++ +S + Sbjct: 23 SLRTL----NIFNVNF--ILLSLVIIVNTIIGGYTIMNINSIIAENLKTLRTERNLSLGQ 76 Query: 132 FGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +L G+ LS E+G T P I KI + K + Sbjct: 77 LAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSLL 118 >gi|116617221|ref|YP_817592.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096068|gb|ABJ61219.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 240 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 10/129 (7%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +RK N TQ++ A +V+ +E + L + ++++ D+ Sbjct: 2 EIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKGHPTTEMMLLIIEKFDLPLDFF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 N + L + A + S R+DK S + K G+ + Y Sbjct: 62 IIPPTNSC----EDNDEELILLSFLANMHSNREDK-PSLKQLEKTSGIAIQKIKQY---- 112 Query: 151 TIPEIKPAR 159 P Sbjct: 113 -YPSYDDLF 120 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++RK G++Q +F + L + ++SN+E+ + P + I + LD+ Sbjct: 1 MEIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKGHPTTEMMLLIIEKFDLPLDF 60 Query: 172 IY 173 Sbjct: 61 FI 62 >gi|325282344|ref|YP_004254885.1| helix-turn-helix domain-containing protein [Deinococcus proteolyticus MRP] gi|324314153|gb|ADY25268.1| helix-turn-helix domain protein [Deinococcus proteolyticus MRP] Length = 129 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R++++R K+++ A ++ E G + S+ L Y IS + Sbjct: 2 KLHERLRELRSERKLRLKDVSEVAEISVPYLSDLERGRTNPSLDTLQTLAAAYSISVHDL 61 Query: 91 YDG 93 +G Sbjct: 62 LEG 64 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL+ +R ++ + + ++ + LS+ E+GRT P + + + + Sbjct: 1 MKLHERLRELRSERKLRLKDVSEVAEISVPYLSDLERGRTNPSLDTLQTLAAAYSISVHD 60 Query: 172 IYFGDE 177 + G E Sbjct: 61 LLEGVE 66 >gi|303239261|ref|ZP_07325790.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593306|gb|EFL63025.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 125 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+++RK TQ+E+ E +V +E L ++ + D++ Sbjct: 3 NRIRELRKELGFTQEELGKMIGLSERSVGSYETSDRDPDTDTLNKLAQIFDCTIDYML 60 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +RK+ G +Q E GK++G+ ++ +YE P+ K+ Q+ +D++ Sbjct: 1 MKNRIRELRKELGFTQEELGKMIGLSERSVGSYETSDRDPDTDTLNKLAQIFDCTIDYML 60 >gi|229056560|ref|ZP_04195967.1| Transcriptional regulator [Bacillus cereus AH603] gi|228720773|gb|EEL72330.1| Transcriptional regulator [Bacillus cereus AH603] Length = 134 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + RQY ++ R+K IR + +Q++ + V+ FENG + ++ Sbjct: 12 KGRQYTVEIKDRLKQIRIDSKLSQEQFGKEVGLTKGTVSKFENGKAFPGRETLEKVSKKF 71 Query: 84 EISFDWIY 91 ++ D++Y Sbjct: 72 NVTIDYLY 79 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RLK IR D +SQ +FGK +G+ T+S +E G+ P + K+ + +D++ Sbjct: 19 EIKDRLKQIRIDSKLSQEQFGKEVGLTKGTVSKFENGKAFPGRETLEKVSKKFNVTIDYL 78 Query: 173 Y 173 Y Sbjct: 79 Y 79 >gi|229074061|ref|ZP_04207116.1| HTH-type transcriptional regulator ansR [Bacillus cereus F65185] gi|228709059|gb|EEL61178.1| HTH-type transcriptional regulator ansR [Bacillus cereus F65185] Length = 128 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 6 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 63 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D Sbjct: 1 MRRMLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVD 60 Query: 171 WIY 173 +I Sbjct: 61 YIL 63 >gi|207724614|ref|YP_002255011.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2] gi|206589836|emb|CAQ36797.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2] Length = 201 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 16 EYTLIITPEIRQYW--KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 L P+ Q VG ++ +R+ + E++ A +S ++ E + + ++ Sbjct: 2 TQPLAQPPQSTQVEGPPAVGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTV 61 Query: 74 RYALYLRNEYEISFDWIYDG 93 L N +S G Sbjct: 62 AVLWRLANALGVSLTDFLAG 81 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G L+++R+ + +S E + G+ S LS E+ P + ++ L Sbjct: 19 AVGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 78 Query: 173 YFGDEVIVP 181 G + P Sbjct: 79 LAGGDGERP 87 >gi|88803785|ref|ZP_01119308.1| transcription regulator [Polaribacter irgensii 23-P] gi|88780313|gb|EAR11495.1| transcription regulator [Polaribacter irgensii 23-P] Length = 257 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 30/75 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK +R TQ+ +A + S ++ +E S +I + + + I D I Sbjct: 3 NLSKNIKHLRTLKKLTQESLAEELSVTRSRISSYEENRSSPTIDFLIDFSAYFRIPIDII 62 Query: 91 YDGEVIDRRYEDVTN 105 ++ + + Sbjct: 63 IKNDLSKAKDVSFID 77 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +K +R K ++Q + L + S +S+YE+ R+ P I + +D Sbjct: 1 MNNLSKNIKHLRTLKKLTQESLAEELSVTRSRISSYEENRSSPTIDFLIDFSAYFRIPID 60 Query: 171 WIYFGD 176 I D Sbjct: 61 IIIKND 66 >gi|83747823|ref|ZP_00944856.1| Transcriptional regulator, MerR family [Ralstonia solanacearum UW551] gi|207739254|ref|YP_002257647.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609] gi|83725470|gb|EAP72615.1| Transcriptional regulator, MerR family [Ralstonia solanacearum UW551] gi|206592627|emb|CAQ59533.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609] Length = 201 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 16 EYTLIITPEIRQYW--KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 L P+ Q VG ++ +R+ + E++ A +S ++ E + + ++ Sbjct: 2 TQPLAQPPQSTQVEGPPAVGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTV 61 Query: 74 RYALYLRNEYEISFDWIYDG 93 L N +S G Sbjct: 62 AVLWRLANALGVSLTDFLAG 81 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G L+++R+ + +S E + G+ S LS E+ P + ++ L Sbjct: 19 AVGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 78 Query: 173 YFGDEVIVP 181 G + P Sbjct: 79 LAGGDGERP 87 >gi|325266057|ref|ZP_08132743.1| XRE family transcriptional regulator [Kingella denitrificans ATCC 33394] gi|324982695|gb|EGC18321.1| XRE family transcriptional regulator [Kingella denitrificans ATCC 33394] Length = 102 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 R++ RK K +SQ L+ + T++ E P + ++ + L Sbjct: 29 HFIEAMNRVRQFRKQKQLSQQALADLVEVSRQTVNMIENQDYNPTLSLCIRLAKALDTDL 88 Query: 170 DWIYFGDEV 178 + +++ +E Sbjct: 89 NALFWEEED 97 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ RK +Q+ +A VN+ EN + ++ + L + + ++ Sbjct: 35 NRVRQFRKQKQLSQQALADLVEVSRQTVNMIENQDYNPTLSLCIRLAKALDTDLNALFWE 94 Query: 94 EVIDRRYE 101 E ++ Sbjct: 95 EEDEQIQP 102 >gi|313680009|ref|YP_004057748.1| XRE family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152724|gb|ADR36575.1| transcriptional regulator, XRE family [Oceanithermus profundus DSM 14977] Length = 71 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +R +Q +A VN E G S+ A + + ++ + +++ Sbjct: 3 NRLPVLRAERGWSQAALAERLGVSRQTVNAIEKGRYDPSLPLAFKIAAVFGLAIEDVFEP 62 Query: 94 EVIDRRYED 102 E + + + Sbjct: 63 EESEALHAE 71 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +R ++G SQ + LG+ T++ E+GR P + A KI V ++ ++ Sbjct: 1 MKNRLPVLRAERGWSQAALAERLGVSRQTVNAIEKGRYDPSLPLAFKIAAVFGLAIEDVF 60 Query: 174 FGDEV 178 +E Sbjct: 61 EPEES 65 >gi|289168842|ref|YP_003447111.1| transcriptional regulator [Streptococcus mitis B6] gi|288908409|emb|CBJ23251.1| transcriptional regulator [Streptococcus mitis B6] Length = 141 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ +QKE+A + +ENG A L + + +S ++ Sbjct: 2 NRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAQQLADFFGVSVGYLLGY 61 Query: 94 EVIDRRYEDVTNKKR 108 E + + + Sbjct: 62 EEAKTLENILKDAEE 76 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R++K +SQ E + +G+ TL N+E G + + + A+++ + ++ Sbjct: 1 MNRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAQQLADFFGVSVGYLLG 60 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +E ++I + + + ++ D S N Sbjct: 61 YEEAKTLENILK-DAEEYLEMTEDDLLSDN 89 >gi|260887021|ref|ZP_05898284.1| immunity repressor protein [Selenomonas sputigena ATCC 35185] gi|330839199|ref|YP_004413779.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260863083|gb|EEX77583.1| immunity repressor protein [Selenomonas sputigena ATCC 35185] gi|329746963|gb|AEC00320.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 135 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 27/90 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK+ RKA TQ E+A S + E + S+ + S + Sbjct: 3 IGEKIKEARKAAGLTQMELAKKTRLSRSYIGDIEKDRYNPSLSTLELIAKATGTSLSALV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E D + L Sbjct: 63 RNEEQSTTPPDHYDTTSPHSKRDLNDLAKF 92 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG ++K RK G++Q+E K + S + + E+ R P + I + T L Sbjct: 1 MSIGEKIKEARKAAGLTQMELAKKTRLSRSYIGDIEKDRYNPSLSTLELIAKATGTSLSA 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 LVRNEE 66 >gi|240849887|ref|YP_002971275.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240267010|gb|ACS50598.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 137 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 2/99 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTRI+ R TQ+++ + +E G + ++ + + Sbjct: 15 VGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQAIAEIMDVPVSYFF 74 Query: 92 DGEVIDRR--YEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + ++ ++ +D + ++ +R +S Sbjct: 75 DKGITSQQVEGFAESDHNFIDFCSSSEGIQLMRAFTNIS 113 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R G++Q + G+ LG+ + YE+G + I ++ + + + Sbjct: 19 IRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQAIAEIMDVPVSYFF 74 >gi|228911402|ref|ZP_04075202.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228848237|gb|EEM93091.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] Length = 131 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 5/97 (5%) Query: 32 VGTRIKDIRKANN-----KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 G ++K +R+ TQ +A + +EN + L + N + +S Sbjct: 7 FGKKLKYLREERKKDNVEWTQTYVANQLGVARTTYTAYENDTKQPPMETILKIANLFSVS 66 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 D++ ++ ++ + K I++ Sbjct: 67 TDFLLGRVSDCKQTNSFDIDNLMNDPELSLWFKDIKE 103 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 114 IGARLKSIRKDKG-----MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 G +LK +R+++ +Q LG+ +T + YE P ++ KI + Sbjct: 7 FGKKLKYLREERKKDNVEWTQTYVANQLGVARTTYTAYENDTKQPPMETILKIANLFSVS 66 Query: 169 LDWIY 173 D++ Sbjct: 67 TDFLL 71 >gi|284990495|ref|YP_003409049.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063740|gb|ADB74678.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 64 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ +R +Q ++A+ +N E G S+ A+ L ++ + + ++D Sbjct: 5 VRALRMQRGLSQGDLAVVMGVSRQTINSIETGRYLPSLPLAIGLARFFKTTVEEVFD 61 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 34/60 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++++R +G+SQ + ++G+ T+++ E GR +P + A + + K ++ ++ Sbjct: 1 MRNAVRALRMQRGLSQGDLAVVMGVSRQTINSIETGRYLPSLPLAIGLARFFKTTVEEVF 60 >gi|212710117|ref|ZP_03318245.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM 30120] gi|212687324|gb|EEB46852.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEY 83 +++ + +G R+K IR++ +Q ++A S + +E G S AL + Sbjct: 1 MKKINEIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEAL 60 Query: 84 EISFDWIYDGEVIDR 98 +S + G D+ Sbjct: 61 GVSPAELMFGTQSDQ 75 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLKSIR+ +G+SQ + KL G S + NYE G A I + + F Sbjct: 10 ERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEALGVSPAELMF 69 Query: 175 GDEV 178 G + Sbjct: 70 GTQS 73 >gi|326388271|ref|ZP_08209874.1| transcription regulator, putative [Novosphingobium nitrogenifigens DSM 19370] gi|326207437|gb|EGD58251.1| transcription regulator, putative [Novosphingobium nitrogenifigens DSM 19370] Length = 197 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R+ ++R+ +Q+ +A A+ + ++ E+ S SI + +S Sbjct: 10 DVGQRLLELRRRAGLSQRALAARADVPHAQISQIESNRISPSIASLRRILGGLGLSMAEF 69 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 ++ E + + +D Sbjct: 70 FEPERKEADQVFFRTDELVD 89 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D + +G RL +R+ G+SQ +P++ +S E R P I R+I + Sbjct: 7 DVFDVGQRLLELRRRAGLSQRALAARADVPHAQISQIESNRISPSIASLRRILGGLGLSM 66 Query: 170 DWIYFGDEVIVPKSIKRAKG 189 + + + R Sbjct: 67 AEFFEPERKEADQVFFRTDE 86 >gi|319652413|ref|ZP_08006529.1| hypothetical protein HMPREF1013_03142 [Bacillus sp. 2_A_57_CT2] gi|317395875|gb|EFV76597.1| hypothetical protein HMPREF1013_03142 [Bacillus sp. 2_A_57_CT2] Length = 185 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 32/85 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K R+ + +++A ++ + E G S +I + N + Sbjct: 1 MEEIHLILAKNLKAFRENKKLSLEKVAELTGVSKTMIGQIERGESSPTITTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 ISF + + D + + L Sbjct: 61 ISFTSLINHPQPDTQVVLKKEIQTL 85 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + LK+ R++K +S + +L G+ + + E+G + P I KI K Sbjct: 5 HLILAKNLKAFRENKKLSLEKVAELTGVSKTMIGQIERGESSPTITTIWKIANGLKISFT 64 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + + +K+ S K Sbjct: 65 SLINHPQPDTQVVLKKEIQTLSEDHGK 91 >gi|312976864|ref|ZP_07788613.1| putative transcriptional repressor [Lactobacillus crispatus CTV-05] gi|310896192|gb|EFQ45257.1| putative transcriptional repressor [Lactobacillus crispatus CTV-05] Length = 63 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 27/63 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R + TQ+++A + ++ E G + S+ + + + + D ++ E Sbjct: 1 MKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLFWPEE 60 Query: 96 IDR 98 + Sbjct: 61 KED 63 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R K ++Q + + + + T+S E+G P + +I Q K LD +++ +E Sbjct: 1 MKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLFWPEE 60 >gi|304395275|ref|ZP_07377159.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304357528|gb|EFM21891.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 192 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 29/71 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ + +G ++KD R+ + ++A + + ++ E G S + L Sbjct: 5 MSSKEDSLNIRIGLKVKDERERRGWSLTDLAGHSGVSRAMIHKIERGESSPTAVLLARLS 64 Query: 81 NEYEISFDWIY 91 +++S + Sbjct: 65 GSFDMSISQLL 75 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 25/71 (35%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R+ +G S + G+ + + E+G + P ++ + + E Sbjct: 20 VKDERERRGWSLTDLAGHSGVSRAMIHKIERGESSPTAVLLARLSGSFDMSISQLLAQTE 79 Query: 178 VIVPKSIKRAK 188 V ++ Sbjct: 80 VQTGTLVRHEN 90 >gi|312200129|ref|YP_004020190.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311231465|gb|ADP84320.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 273 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +++G I+D R+A + + +++A A ++ E G+ S + IS Sbjct: 5 HVRELGDYIRDQRRAAHISLRQLAQQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISA 64 Query: 88 DWIY 91 + +Y Sbjct: 65 EVLY 68 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 L +G ++ R+ +S + + G+ N LS E+G P + ++I + + Sbjct: 4 LHVRELGDYIRDQRRAAHISLRQLAQQAGVSNPYLSQIERGLRKPSAEILQQIAKALRIS 63 Query: 169 LDWIY 173 + +Y Sbjct: 64 AEVLY 68 >gi|257141046|ref|ZP_05589308.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 193 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E A A + ++ E G+ S SI + + ++ + Sbjct: 17 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYFV 76 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +R + + Sbjct: 77 ETPSEERSVCRGDQLRFFSFADSANLFARL 106 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G++++++R+ + E G+ LS E+G P I I + + Sbjct: 16 ALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYF 75 Query: 173 Y 173 Sbjct: 76 V 76 >gi|167772036|ref|ZP_02444089.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM 17241] gi|167665834|gb|EDS09964.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM 17241] Length = 96 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST-SIRYALYLR 80 + + ++ K++G RI+ RK +Q+E+A +N S ++ E+ SI + Sbjct: 23 SNDEARFLKNIGFRIQFFRKKCGMSQEELAEKSNLSYSTISHIESTSTYPMSIIALYRIA 82 Query: 81 NEYEISFDWIY 91 I+ + Sbjct: 83 AALNIAPYQLL 93 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 1/93 (1%) Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 I FD + +G V +N + IG R++ RK GMSQ E + + ST+S Sbjct: 4 IHFDPVLNGCVNMDVASRYSNDEARFLKNIGFRIQFFRKKCGMSQEELAEKSNLSYSTIS 63 Query: 145 NYEQGRTIP-EIKPARKIKQVTKKHLDWIYFGD 176 + E T P I +I + D Sbjct: 64 HIESTSTYPMSIIALYRIAAALNIAPYQLLMFD 96 >gi|254359387|ref|ZP_04975659.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|148028574|gb|EDK86534.1| DNA-binding protein [Burkholderia mallei 2002721280] Length = 201 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E A A + ++ E G+ S SI + + ++ + Sbjct: 25 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYFV 84 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +R + + Sbjct: 85 ETPSEERSVCRGDQLRFFSFADSANLFARL 114 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G++++++R+ + E G+ LS E+G P I I + + Sbjct: 24 ALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYF 83 Query: 173 Y 173 Sbjct: 84 V 84 >gi|53723158|ref|YP_112143.1| MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|134281916|ref|ZP_01768623.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|254264128|ref|ZP_04954993.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|52213572|emb|CAH39625.1| putative MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|134246978|gb|EBA47065.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|254215130|gb|EET04515.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 193 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E A A + ++ E G+ S SI + + ++ + Sbjct: 17 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYFV 76 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +R + + Sbjct: 77 ETPSEERSVCRGDQLRFFSFADSANLFARL 106 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G++++++R+ + E G+ LS E+G P I I + + Sbjct: 16 ALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYF 75 Query: 173 Y 173 Sbjct: 76 V 76 >gi|40063589|gb|AAR38378.1| helix-turn-helix domain protein [uncultured marine bacterium 582] Length = 121 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 32/104 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R+ +Q +MA S + +E + + +S W+ Sbjct: 4 FGDRLAAAREHAAMSQSDMAKRLGVKVSTLRKWEQDLSEPRANRLSMMAGLLNVSIMWLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + E D + D ++ ++ S +L Sbjct: 64 NAEGEGISGPDDGSYIAPDIQETLNEIRDMKTVMKTSSERLARL 107 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RL + R+ MSQ + K LG+ STL +EQ + P + + + Sbjct: 1 MATFGDRLAAAREHAAMSQSDMAKRLGVKVSTLRKWEQDLSEPRANRLSMMAGLLNVSIM 60 Query: 171 WIYFGD 176 W+ + Sbjct: 61 WLLNAE 66 >gi|83717916|ref|YP_440408.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83651741|gb|ABC35805.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 236 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E A A + ++ E G+ S SI + + ++ + Sbjct: 60 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYFV 119 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +R + + Sbjct: 120 ETPSEERSVCRGDQLRFFSFADSANLFARL 149 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 4/98 (4%) Query: 80 RNEYEISF----DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + Y+ S ++ + A+G++++++R+ + E Sbjct: 22 SHIYQTSLFSIKHFLTIRFRPAMVPSTENTRPANAGVALGSKIRALRQRLKRTLDETATA 81 Query: 136 LGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G+ LS E+G P I I + + Sbjct: 82 AGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYFV 119 >gi|76817605|ref|YP_336411.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|76582078|gb|ABA51552.1| DNA-binding protein [Burkholderia pseudomallei 1710b] Length = 236 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E A A + ++ E G+ S SI + + ++ + Sbjct: 60 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYFV 119 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +R + + Sbjct: 120 ETPSEERSVCRGDQLRFFSFADSANLFARL 149 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G++++++R+ + E G+ LS E+G P I I + + Sbjct: 59 ALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYF 118 Query: 173 Y 173 Sbjct: 119 V 119 >gi|53716415|ref|YP_105155.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121597232|ref|YP_991127.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381577|ref|YP_001025521.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126442447|ref|YP_001064011.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126446100|ref|YP_001077587.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|126458019|ref|YP_001076933.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|167000254|ref|ZP_02266073.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167725174|ref|ZP_02408410.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167744105|ref|ZP_02416879.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167821307|ref|ZP_02452987.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|167829646|ref|ZP_02461117.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167899756|ref|ZP_02487157.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|167908062|ref|ZP_02495267.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|167916410|ref|ZP_02503501.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167924271|ref|ZP_02511362.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|217424415|ref|ZP_03455914.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226194042|ref|ZP_03789643.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|237509646|ref|ZP_04522361.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|238561521|ref|ZP_00441977.2| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242313514|ref|ZP_04812531.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|254177387|ref|ZP_04884043.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254182642|ref|ZP_04889236.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254185685|ref|ZP_04892203.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254192472|ref|ZP_04898911.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254203094|ref|ZP_04909456.1| DNA-binding protein [Burkholderia mallei FMH] gi|254208427|ref|ZP_04914776.1| DNA-binding protein [Burkholderia mallei JHU] gi|254296435|ref|ZP_04963891.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|52422385|gb|AAU45955.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121225030|gb|ABM48561.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126221938|gb|ABN85443.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126231787|gb|ABN95200.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|126238954|gb|ABO02066.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147746139|gb|EDK53217.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751114|gb|EDK58182.1| DNA-binding protein [Burkholderia mallei JHU] gi|157806343|gb|EDO83513.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157933371|gb|EDO89041.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160698427|gb|EDP88397.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169649230|gb|EDS81923.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184213177|gb|EDU10220.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217392880|gb|EEC32903.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225933987|gb|EEH29973.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|235001851|gb|EEP51275.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|238524516|gb|EEP87949.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242136753|gb|EES23156.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|243063746|gb|EES45932.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|261826389|gb|ABN00454.2| DNA-binding protein [Burkholderia mallei NCTC 10229] Length = 179 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E A A + ++ E G+ S SI + + ++ + Sbjct: 3 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYFV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +R + + Sbjct: 63 ETPSEERSVCRGDQLRFFSFADSANLFARL 92 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G++++++R+ + E G+ LS E+G P I I + + Sbjct: 1 MALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 60 Query: 172 IY 173 Sbjct: 61 FV 62 >gi|320332978|ref|YP_004169689.1| XRE family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754267|gb|ADV66024.1| transcriptional regulator, XRE family [Deinococcus maricopensis DSM 21211] Length = 73 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 V I+ +RK TQ ++A + +N E G S+ A + + + Sbjct: 3 RPAVNNHIRALRKQRGWTQSDLAEQLDVSRQTINAIETGKYDPSLPLAFRISLLFAARIE 62 Query: 89 WIY 91 I+ Sbjct: 63 DIF 65 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 34/70 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + A+ ++++RK +G +Q + + L + T++ E G+ P + A +I + Sbjct: 1 MGRPAVNNHIRALRKQRGWTQSDLAEQLDVSRQTINAIETGKYDPSLPLAFRISLLFAAR 60 Query: 169 LDWIYFGDEV 178 ++ I+ E Sbjct: 61 IEDIFLFQES 70 >gi|319784815|ref|YP_004144291.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170703|gb|ADV14241.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 238 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ RK T ++A+ + ++ ENG+ S S+ L + + Sbjct: 53 IGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFF 112 Query: 92 DGEVIDRRYEDVTNKKRLD 110 +R V + LD Sbjct: 113 RRFEEERSAVFVKAGQGLD 131 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 84 EISFD-WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 ++S D + + ++++ AIG +++ RK G++ + + Sbjct: 22 KVSADGKTIRAPLTQNPHAIRDTREKVLEVAIGREVRAFRKKLGITVADLAVATDISLGM 81 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 LS E G T P + + + + + + +E +K +G ++ + Sbjct: 82 LSKIENGITSPSLTTLQALSRALGVPVTAFFRRFEEERSAVFVKAGQGLDVERRGTRAGH 141 Query: 202 SSN 204 N Sbjct: 142 QYN 144 >gi|317121314|ref|YP_004101317.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591294|gb|ADU50590.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter marianensis DSM 12885] Length = 464 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R +Q+E+A A AV+ E G + S+ AL L + ++ + Sbjct: 32 LRAARLRLGLSQQELAARAGVTRQAVSAIEGGQAAPSLGVALRLARALGCRVEDLFWLDD 91 Query: 96 IDRR 99 + Sbjct: 92 PEPE 95 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L++ R G+SQ E G+ +S E G+ P + A ++ + ++ +++ Sbjct: 30 NGLRAARLRLGLSQQELAARAGVTRQAVSAIEGGQAAPSLGVALRLARALGCRVEDLFWL 89 Query: 176 DEVIVPKSIK 185 D+ ++ Sbjct: 90 DDPEPEVEVE 99 >gi|304411730|ref|ZP_07393342.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|307306218|ref|ZP_07585963.1| helix-turn-helix domain protein [Shewanella baltica BA175] gi|304349918|gb|EFM14324.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|306911091|gb|EFN41518.1| helix-turn-helix domain protein [Shewanella baltica BA175] Length = 191 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + + A ++ + E G S +I + + + IS + Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTP 71 Query: 96 IDR 98 + Sbjct: 72 QSQ 74 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK++R KG S + + G+ + + E+G + P I KI L Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 >gi|301382068|ref|ZP_07230486.1| RstR1 [Pseudomonas syringae pv. tomato Max13] gi|302058949|ref|ZP_07250490.1| RstR1 [Pseudomonas syringae pv. tomato K40] gi|302130444|ref|ZP_07256434.1| RstR1 [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 203 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D T++ +R A N TQ+++A S ++ +E+G L L + +S + Sbjct: 38 DFATKLISLRSAQNLTQQQLADAVGITPSQISRYESGQAKPRKIILLRLADALGVSSTEL 97 Query: 91 YD 92 Sbjct: 98 LQ 99 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L S+R + ++Q + +G+ S +S YE G+ P ++ + Sbjct: 43 LISLRSAQNLTQQQLADAVGITPSQISRYESGQAKPRKIILLRLADALGVSSTELL 98 >gi|312141162|ref|YP_004008498.1| transcriptional regulator [Rhodococcus equi 103S] gi|325674016|ref|ZP_08153706.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|311890501|emb|CBH49819.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555281|gb|EGD24953.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 469 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 16/105 (15%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R +Q +A + S +N E+ + ++ L + + + Sbjct: 6 VGARLRQLRTERGLSQAALAKTLDISASYLNQIEHDVRPLTVPVLLRISEVFGVDT---- 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 T D + A L+ + DK M + + Sbjct: 62 ------------TFFSSQDDTRLIAELREVALDKDMGIDADAQEI 94 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +GARL+ +R ++G+SQ K L + S L+ E + +I +V Sbjct: 1 MSKTFVGARLRQLRTERGLSQAALAKTLDISASYLNQIEHDVRPLTVPVLLRISEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + D+ + ++ Sbjct: 61 TTFFSSQDDTRLIAELRE 78 >gi|295705216|ref|YP_003598291.1| HTH-type transcriptional regulator AnsR [Bacillus megaterium DSM 319] gi|294802875|gb|ADF39941.1| HTH-type transcriptional regulator ansR (Ans operon repressor) [Bacillus megaterium DSM 319] Length = 118 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R+ +RK + + A +S +E+G S+ + + ++ S D++ Sbjct: 3 SRLAQLRKEKKWSLQYTADQLEIAKSTYAGYESGYRRPSLEALVTIAELFDTSTDYLLGK 62 Query: 94 EVID 97 E Sbjct: 63 EKEP 66 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +RL +RK+K S L + ST + YE G P ++ I ++ D++ Sbjct: 1 MLSRLAQLRKEKKWSLQYTADQLEIAKSTYAGYESGYRRPSLEALVTIAELFDTSTDYLL 60 Query: 174 FGDEV 178 ++ Sbjct: 61 GKEKE 65 >gi|260460417|ref|ZP_05808669.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034062|gb|EEW35321.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 238 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ RK T ++A+ + ++ ENG+ S S+ L + + Sbjct: 53 IGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFF 112 Query: 92 DGEVIDRRYEDVTNKKRLD 110 +R V + LD Sbjct: 113 RRFEEERSAVFVKAGQGLD 131 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 84 EISFD-WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 ++S D + + ++++ AIG +++ RK G++ + + Sbjct: 22 KVSADGKTIRAPLTQNPHAIRDTREKVLEVAIGREVRAFRKKLGITVADLAVATDISLGM 81 Query: 143 LSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 LS E G T P + + + + + + +E +K +G ++ + Sbjct: 82 LSKIENGITSPSLTTLQALSRALGVPVTAFFRRFEEERSAVFVKAGQGLDVERRGTRAGH 141 Query: 202 SSN 204 N Sbjct: 142 QYN 144 >gi|229105641|ref|ZP_04236274.1| hypothetical protein bcere0019_47690 [Bacillus cereus Rock3-28] gi|229118501|ref|ZP_04247855.1| hypothetical protein bcere0017_47680 [Bacillus cereus Rock1-3] gi|228665071|gb|EEL20559.1| hypothetical protein bcere0017_47680 [Bacillus cereus Rock1-3] gi|228677777|gb|EEL32021.1| hypothetical protein bcere0019_47690 [Bacillus cereus Rock3-28] Length = 79 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFN 61 Query: 85 ISFDWIYD 92 + + I+ Sbjct: 62 VPVEEIFT 69 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI ++ Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIF 60 Query: 166 KKHLDWIYF---GDEVIVP 181 ++ I+ G+E Sbjct: 61 NVPVEEIFTLVEGEEDDEE 79 >gi|228934377|ref|ZP_04097215.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228962515|ref|ZP_04123870.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pakistani str. T13001] gi|229046812|ref|ZP_04192450.1| HTH-type transcriptional regulator ansR [Bacillus cereus AH676] gi|229113322|ref|ZP_04242782.1| HTH-type transcriptional regulator ansR [Bacillus cereus Rock1-15] gi|229128432|ref|ZP_04257412.1| HTH-type transcriptional regulator ansR [Bacillus cereus BDRD-Cer4] gi|228655015|gb|EEL10873.1| HTH-type transcriptional regulator ansR [Bacillus cereus BDRD-Cer4] gi|228670120|gb|EEL25503.1| HTH-type transcriptional regulator ansR [Bacillus cereus Rock1-15] gi|228724525|gb|EEL75844.1| HTH-type transcriptional regulator ansR [Bacillus cereus AH676] gi|228797165|gb|EEM44422.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228825279|gb|EEM71074.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 128 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 6 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 63 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D Sbjct: 1 MRRMLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVD 60 Query: 171 WIY 173 +I Sbjct: 61 YIL 63 >gi|217971536|ref|YP_002356287.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217496671|gb|ACK44864.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 191 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + + A ++ + E G S +I + + + IS + Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTP 71 Query: 96 IDR 98 + Sbjct: 72 QSQ 74 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK++R KG S + + G+ + + E+G + P I KI L Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 >gi|254360461|ref|ZP_04976610.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] gi|153091001|gb|EDN73006.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] Length = 218 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RIK RK TQK++A AV+ +E+ + L L + Sbjct: 4 QTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTTKPNSENILDLSTVLQCDIS 63 Query: 89 WIYDGEVIDR 98 W+ G Sbjct: 64 WLLRGNGESN 73 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 ++ +G R+KS RK+ ++Q + L G+ + +S +E T P + + V + Sbjct: 1 MNTQTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTTKPNSENILDLSTVLQC 60 Query: 168 HLDWIYFGD 176 + W+ G+ Sbjct: 61 DISWLLRGN 69 >gi|149185489|ref|ZP_01863805.1| DNA-binding protein, putative [Erythrobacter sp. SD-21] gi|148830709|gb|EDL49144.1| DNA-binding protein, putative [Erythrobacter sp. SD-21] Length = 242 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 39/91 (42%) Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 IS D + + +D ++ +D +G R+K +R +G + + +G+ TL Sbjct: 100 ISEDELEAANEVASLEDDPEHRFGVDHETLGTRIKRLRTTRGFTMCGLAESVGVSKPTLW 159 Query: 145 NYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +E + P + +++ + + +G Sbjct: 160 KWEGDQVRPRHETMQRLAKQLDVSELELVYG 190 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 10/145 (6%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQY---WKDVGTRIKDIRKANNKTQKEMAIGANQLE 58 F P E L++ E + ++ + +GTRIK +R T +A + Sbjct: 96 FAKPISEDELEAANEVASLEDDPEHRFGVDHETLGTRIKRLRTTRGFTMCGLAESVGVSK 155 Query: 59 SAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +E L + ++S + G + + ++ + Sbjct: 156 PTLWKWEGDQVRPRHETMQRLAKQLDVSELELVYGAPGLGKAVALAEGGLDSGASLADLI 215 Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTL 143 ++ R+ + G+ +++ Sbjct: 216 RASRR-------RIAQAAGVDEASV 233 >gi|197120409|ref|YP_002140836.1| helix-turn-helix domain-containing protein [Geobacter bemidjiensis Bem] gi|197089769|gb|ACH41040.1| helix-turn-helix domain protein [Geobacter bemidjiensis Bem] Length = 307 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 3/88 (3%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI--RYALYLRNEYEISFDWI 90 G RI+ +R+A TQ +A ++ +EN SI A L + E+ I Sbjct: 20 GVRIRTVREAKRLTQLYVANVVGVTTDTISRWENNRY-PSIKRENAQKLADALEVPLGDI 78 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 E E T P + Sbjct: 79 LRDEAPVPEDEPGTEFPPPSPRRTKLFI 106 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI--KPARKIKQVTKKHLDWIYFG 175 ++++R+ K ++Q+ ++G+ T+S +E R P I + A+K+ + L I Sbjct: 23 IRTVREAKRLTQLYVANVVGVTTDTISRWENNRY-PSIKRENAQKLADALEVPLGDILR- 80 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 DE VP+ + S + K Sbjct: 81 DEAPVPEDEPGTEFPPPSPRRTK 103 >gi|229541873|ref|ZP_04430933.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326293|gb|EEN91968.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 180 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/105 (10%), Positives = 34/105 (32%), Gaps = 1/105 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +I+++R T K+++ N ++ E G S +I + + + Sbjct: 1 MIEIHKKIRELRLQKGLTLKQLSEKTNLTIGFLSQVERGTSSLAITSLKKIADSLGVEIS 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAI-GARLKSIRKDKGMSQIEF 132 + ++ + N+K ++ + Sbjct: 61 YFFNPTITAHYAVKKENQKTFTVEGNATKYIRLSGNFHNRNLECM 105 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +++ +R KG++ + + + LS E+G + I +KI + Sbjct: 1 MIEIHKKIRELRLQKGLTLKQLSEKTNLTIGFLSQVERGTSSLAITSLKKIADSLGVEIS 60 Query: 171 WIY 173 + + Sbjct: 61 YFF 63 >gi|16800299|ref|NP_470567.1| hypothetical protein lin1230 [Listeria innocua Clip11262] gi|16413704|emb|CAC96461.1| lin1230 [Listeria innocua Clip11262] Length = 131 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 36/102 (35%), Gaps = 1/102 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLDMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 D++ + I ++ + + +R + ++ Sbjct: 61 DYLLGQQSIPTYAPSELQGEKDIAKRMIKISEDLRYEDDLNL 102 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLDMVTQIATLYDVSVDYLL- 64 Query: 175 GDEVIVPKSIKRAKGNQSSKKS 196 G + I + +G + K Sbjct: 65 GQQSIPTYAPSELQGEKDIAKR 86 >gi|296272112|ref|YP_003654743.1| XRE family transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296096287|gb|ADG92237.1| transcriptional regulator, XRE family [Arcobacter nitrofigilis DSM 7299] Length = 197 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 3/93 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG +IK +RK KE+A A ++L E+G S+ + ++ + Sbjct: 6 NVGKKIKFLRKEKKMNAKELAKDAGISYGMLSLLESGSTQGSVETLRKVAKVLGVTIAHL 65 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + N + Y + K RK Sbjct: 66 FTNSEDSDLATSPKNLDNENSYVVR---KEQRK 95 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +G ++K +RK+K M+ E K G+ LS E G T ++ RK+ +V + Sbjct: 5 FNVGKKIKFLRKEKKMNAKELAKDAGISYGMLSLLESGSTQGSVETLRKVAKVLGVTIAH 64 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD--KKSSNP 205 ++ E + + N++S +K+ KK S P Sbjct: 65 LFTNSEDSDLATSPKNLDNENSYVVRKEQRKKISFP 100 >gi|282851522|ref|ZP_06260887.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri 224-1] gi|282557490|gb|EFB63087.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri 224-1] Length = 114 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +R+ NN ++ +A +E G + + Y +S D++ G Sbjct: 6 NRLIALREENNLSKTAVAKKLGLSVQRYANWEYGTREPDLENLAAIAKLYGVSTDYL-TG 64 Query: 94 EVIDRRYEDVTNKKR 108 + DR + V +K Sbjct: 65 QNDDRDKQSVDLEKD 79 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A RL ++R++ +S+ K LG+ +N+E G P+++ I ++ D Sbjct: 1 MSAFSNRLIALREENNLSKTAVAKKLGLSVQRYANWEYGTREPDLENLAAIAKLYGVSTD 60 Query: 171 WIYFGDEVIVPKSIKRAK 188 ++ ++ +S+ K Sbjct: 61 YLTGQNDDRDKQSVDLEK 78 >gi|259047792|ref|ZP_05738193.1| Xre family toxin-antitoxin system, antitoxin component [Granulicatella adiacens ATCC 49175] gi|259035469|gb|EEW36724.1| Xre family toxin-antitoxin system, antitoxin component [Granulicatella adiacens ATCC 49175] Length = 64 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 34/64 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK G+ Q + K LG+ T+ E + P ++ A KI ++ + +++ I+ Sbjct: 1 MKNNIKQLRKAAGLRQEDMAKTLGVSRQTIIAIENDKYNPTLELAMKIARLLQLNVEEIF 60 Query: 174 FGDE 177 ++ Sbjct: 61 VLED 64 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RKA Q++MA + EN + ++ A+ + +++ + I+ Sbjct: 3 NNIKQLRKAAGLRQEDMAKTLGVSRQTIIAIENDKYNPTLELAMKIARLLQLNVEEIFVL 62 Query: 94 EV 95 E Sbjct: 63 ED 64 >gi|257468157|ref|ZP_05632253.1| SOS-response transcriptional repressor [Fusobacterium ulcerans ATCC 49185] gi|317062443|ref|ZP_07926928.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688119|gb|EFS24954.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 205 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 26/73 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I +RK N TQ E+A N + ++ +E I + + + Sbjct: 3 NLGQKIMLLRKKENMTQDELAEKLNISKQSILNYETEKRLIPIDVLSNIAKLFNFPIENF 62 Query: 91 YDGEVIDRRYEDV 103 + D Sbjct: 63 FSNTFDDNEILKN 75 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y +G ++ +RK + M+Q E + L + ++ NYE + + I I ++ ++ Sbjct: 1 MYNLGQKIMLLRKKENMTQDELAEKLNISKQSILNYETEKRLIPIDVLSNIAKLFNFPIE 60 Query: 171 WIY 173 + Sbjct: 61 NFF 63 >gi|169343424|ref|ZP_02864427.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] gi|169298510|gb|EDS80596.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] Length = 182 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 3/91 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K+IRK ++ TQ+EMA N S +EN S + + I + Sbjct: 8 KIGNSLKEIRKNHSLTQEEMAKALNIPRSTYANYENNKREPSKELLEKISEVFNIP---L 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 D V K+ I +K Sbjct: 65 IDKPVSIFSGPGGEQLKKSLSMPINNDIKKY 95 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 31/60 (51%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG LK IRK+ ++Q E K L +P ST +NYE + P + KI +V L Sbjct: 5 DFIKIGNSLKEIRKNHSLTQEEMAKALNIPRSTYANYENNKREPSKELLEKISEVFNIPL 64 >gi|192291025|ref|YP_001991630.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284774|gb|ACF01155.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 474 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG R++ +R+ TQ+ +A S +N EN ++ L L I Sbjct: 6 VGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGIDV 61 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +GARL+ +R+ +GM+Q +G+ S L+ E + + K+ Sbjct: 1 MKKAYVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGID 60 Query: 169 LDWIYFGDEV 178 + ++ D+ Sbjct: 61 V-QLFSEDDE 69 >gi|54302999|ref|YP_132992.1| HTH_3family transcriptional regulator [Photobacterium profundum SS9] gi|46916427|emb|CAG23192.1| putative transcriptional regulator, HTH_3family [Photobacterium profundum SS9] Length = 208 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K+IR A+ T +E + S ++ EN S + + L N + + Sbjct: 28 KLGKRLKEIRMAHGLTLEEASKRTGLARSTLSKIENEQISPTFQAMQKLANGLSVDIPQL 87 Query: 91 Y 91 + Sbjct: 88 F 88 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 6/109 (5%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 +++ P +G RLK IR G++ E K G+ STLS E + P Sbjct: 10 YPSMSVAKELESEKIKPLKLGKRLKEIRMAHGLTLEEASKRTGLARSTLSKIENEQISPT 69 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + +K+ + ++ PK IK A G + ++ + K Sbjct: 70 FQAMQKLANGLSVDIPQLF-----APPKQIK-ATGRRDITRTGEGKPHP 112 >gi|32473937|ref|NP_866931.1| transcription regulator [Rhodopirellula baltica SH 1] gi|32444474|emb|CAD74472.1| probable transcription regulator [Rhodopirellula baltica SH 1] Length = 233 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 6/104 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R++ +R T E+A + Q +S ++ EN + S+ L + +S + Sbjct: 54 ELAQRLRQLRLDRGMTLDEVAQKSGQTKSWLSRVENFRITPSLPALADLASSLGVSTSSL 113 Query: 91 YDGEVIDR------RYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +G E ++ D L S R + M Sbjct: 114 LEGLDDRPQIVCVRHDERKKIQRDPDSSIEYYSLASERTHRTMD 157 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%) Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 S+ N +SF + + + ++ + RL+ +R D+GM+ E Sbjct: 15 SLDANWRWCN--NVSFQSTRTEDSSSDPHNAAARGQAMNLVELAQRLRQLRLDRGMTLDE 72 Query: 132 FGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + G S LS E R P + + + G + R + Sbjct: 73 VAQKSGQTKSWLSRVENFRITPSLPALADLASSLGVSTSSLLEGLDDRPQIVCVRHDERK 132 Query: 192 SSKK 195 ++ Sbjct: 133 KIQR 136 >gi|13476100|ref|NP_107670.1| hypothetical protein mll7326 [Mesorhizobium loti MAFF303099] gi|14026860|dbj|BAB53456.1| mll7326 [Mesorhizobium loti MAFF303099] Length = 192 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ RK T ++A+ + ++ ENG+ S S+ L + + Sbjct: 6 IGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFF 65 Query: 92 DGEVIDRRYEDVTNKKRLD 110 +R V + LD Sbjct: 66 RRFEEERSAVFVKAGEGLD 84 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + AIG +++ RK G++ + + LS E G T P + + + + Sbjct: 1 MLEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVP 60 Query: 169 LDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + +E +K +G ++ + N Sbjct: 61 VTAFFRRFEEERSAVFVKAGEGLDVERRGTRAGHQYN 97 >gi|332978243|gb|EGK14973.1| aspartate aminotransferase [Psychrobacter sp. 1501(2011)] Length = 551 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGA-----NQLESAVNLFENGMCSTSIRYALY 78 + +K G R+ +RKA T +++A A++ +E G+ Sbjct: 2 NEQSDYKAQGERLSKLRKAKGLTAEQLATAMTNAGSKVSRGAISNWERGINGIVSSKLPA 61 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 L N S ++ GE+I+ + + + L Sbjct: 62 LANILGCSEGYLLRGELIEPDSNNSSQSQAL 92 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 6/98 (6%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLL-----GMPNSTLSNYEQGRTIPEIKPARK 160 ++ D A G RL +RK KG++ + + + +SN+E+G Sbjct: 2 NEQSDYKAQGERLSKLRKAKGLTAEQLATAMTNAGSKVSRGAISNWERGINGIVSSKLPA 61 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + ++ G E+I P S ++ S +++ Sbjct: 62 LANILGCSEGYLLRG-ELIEPDSNNSSQSQALSLQAQT 98 >gi|327393585|dbj|BAK11007.1| putative transcriptional regulator [Pantoea ananatis AJ13355] Length = 194 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ + RKA N T E+A + ++ ++ E G S S L N I+ + Sbjct: 13 DIARLLLKHRKARNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANAMNITLSKL 72 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + ++ + + Sbjct: 73 FAELELRQNSLVLFADQQQHWTDEQSGI 100 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 1/91 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + + + +D LK RK + ++ E + G+ + +S E+G + P + Sbjct: 2 DKTSKNQIVDSDIARLLLKH-RKARNLTVTELAQRSGVSQAMISKVERGTSSPSATILSR 60 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + L ++ E+ + A Q Sbjct: 61 LANAMNITLSKLFAELELRQNSLVLFADQQQ 91 >gi|262373689|ref|ZP_06066967.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] gi|262311442|gb|EEY92528.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] Length = 183 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG I+ R + +Q+E+A A + E GM + S+ + N +++F + Sbjct: 11 VGQNIRFYRNQHQLSQQELAERAGVSRRTIASLETGMVNISLTKLDAIANALDVNFKQLV 70 Query: 92 D 92 Sbjct: 71 T 71 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 35/101 (34%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N +G ++ R +SQ E + G+ T+++ E G + I Sbjct: 2 NHPDAVLQYVGQNIRFYRNQHQLSQQELAERAGVSRRTIASLETGMVNISLTKLDAIANA 61 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + + E++ +K + +S+ +S P Sbjct: 62 LDVNFKQLVTAPELVDSAVVKTLAWQGTHLESQATLHASIP 102 >gi|302530030|ref|ZP_07282372.1| predicted protein [Streptomyces sp. AA4] gi|302438925|gb|EFL10741.1| predicted protein [Streptomyces sp. AA4] Length = 180 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P+ R VGTRI+ +R +A + + ++ ENG + ++ + Sbjct: 6 APDGRALAAVVGTRIRTLRTRAGVGLTTLAADSGLGKGTLSELENGRRNPTLDTLFAIAT 65 Query: 82 EYEISFDWIYDGEV 95 I + G+ Sbjct: 66 ALSIPLSDLLFGDD 79 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++++R G+ G+ TLS E GR P + I L + FGD+ Sbjct: 20 IRTLRTRAGVGLTTLAADSGLGKGTLSELENGRRNPTLDTLFAIATALSIPLSDLLFGDD 79 Query: 178 VIVP 181 + Sbjct: 80 GVAE 83 >gi|251790167|ref|YP_003004888.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538788|gb|ACT07409.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 77 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 LI + G R+K +R +Q+ A + ++ E G+ + ++ Sbjct: 3 LIGMKNTKDITARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGV 62 Query: 79 LRNEYEISFDWIYD 92 + + EI ++D Sbjct: 63 IADGLEIQLQSLFD 76 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+K++R G+SQ F G+ + +S E+G P ++ I + L ++ Sbjct: 16 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADGLEIQLQSLF 75 >gi|225017049|ref|ZP_03706241.1| hypothetical protein CLOSTMETH_00974 [Clostridium methylpentosum DSM 5476] gi|224950216|gb|EEG31425.1| hypothetical protein CLOSTMETH_00974 [Clostridium methylpentosum DSM 5476] Length = 115 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +RK Q E A S + +EN + S+ L Y +S D++ Sbjct: 17 LGEKLEVLRKGKRLQQNEAANLLGVKPSTFSGYENDTTTPSLEVFSDLCAFYNVSADYLL 76 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + + Sbjct: 77 GYDKKQMLSVEGLTDDEI 94 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G +L+ +RK K + Q E LLG+ ST S YE T P ++ + D+ Sbjct: 15 YGLGEKLEVLRKGKRLQQNEAANLLGVKPSTFSGYENDTTTPSLEVFSDLCAFYNVSADY 74 Query: 172 IYFGDEVIV 180 + D+ + Sbjct: 75 LLGYDKKQM 83 >gi|188579020|ref|YP_001915949.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523472|gb|ACD61417.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A] Length = 62 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++++R+A+ +Q E+ +N E G S+ A + + S + ++ E Sbjct: 1 MRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVFLYED 60 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +R+ G SQ E G+ LG+ T++ E G+ P + A +I ++ + ++ ++ ++ Sbjct: 1 MRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVFLYED 60 >gi|167840807|ref|ZP_02467491.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 179 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T E A A + ++ E G+ S SI + + ++ + Sbjct: 3 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQYFV 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +R + + Sbjct: 63 ETPSEERSVCRGEQLRFFSFADSANLFARL 92 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G++++++R+ + E G+ LS E+G P I I + + Sbjct: 1 MALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 60 Query: 172 IY 173 Sbjct: 61 FV 62 >gi|94995138|ref|YP_603236.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|94548646|gb|ABF38692.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10750] Length = 68 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK+ R K +SQ L+G+ T++ E+G P I I +V K LD +++ + Sbjct: 6 LKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWEAD 65 Query: 178 V 178 Sbjct: 66 D 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 23/57 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R + +Q+ +A + E G + +I + + + + D ++ Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|300172339|ref|YP_003771504.1| helix-turn-helix domain-containing protein [Leuconostoc gasicomitatum LMG 18811] gi|299886717|emb|CBL90685.1| helix-turn-helix domain protein [Leuconostoc gasicomitatum LMG 18811] Length = 246 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R A++ TQ+E A +V+ +EN S L + + +++ ++ Sbjct: 3 IGDQIKHLRTAHHLTQQEFATKIYISYQSVSNWENHRGYPSTEIMLLIIDTFDLPLNYFI 62 Query: 92 DGEVI 96 ++ Sbjct: 63 AKDID 67 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R ++Q EF + + ++SN+E R P + I L++ Sbjct: 1 MTIGDQIKHLRTAHHLTQQEFATKIYISYQSVSNWENHRGYPSTEIMLLIIDTFDLPLNY 60 Query: 172 IYFGD 176 D Sbjct: 61 FIAKD 65 >gi|298674897|ref|YP_003726647.1| transcriptional regulator, XRE family [Methanohalobium evestigatum Z-7303] gi|298287885|gb|ADI73851.1| transcriptional regulator, XRE family [Methanohalobium evestigatum Z-7303] Length = 68 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R + TQ+ +A +N E G SI+ A L +E S + ++ Sbjct: 3 NNLKVWRAKKDITQEYLAKEMGVTRQTINAIERGKYDPSIQLAFKLSRFFECSIEDLFIF 62 Query: 94 EVID 97 E D Sbjct: 63 EEAD 66 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R K ++Q K +G+ T++ E+G+ P I+ A K+ + + ++ ++ Sbjct: 1 MKNNLKVWRAKKDITQEYLAKEMGVTRQTINAIERGKYDPSIQLAFKLSRFFECSIEDLF 60 Query: 174 FGDEVIVP 181 +E + Sbjct: 61 IFEEADLE 68 >gi|257415438|ref|ZP_05592432.1| predicted protein [Enterococcus faecalis AR01/DG] gi|257157266|gb|EEU87226.1| predicted protein [Enterococcus faecalis ARO1/DG] Length = 250 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R+++ RK T + +A S ++ +E G+ + RY + + + D Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTGD 83 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 W+ G+ + + + + Q+ + L + Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMVRLSEEQLSYHDSLKI 133 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYE 147 +I Y+ + K + +GAR++ RK K + +G+ + ST+SN+E Sbjct: 2 YILRTPYPHIYYKRSVSMK-ITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWE 60 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 G +P + +KI + DW+ +GD Sbjct: 61 LGLNLPNKRYLKKIAKACDTTGDWLLYGD 89 >gi|299823094|ref|ZP_07054979.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|307069497|ref|YP_003877975.1| transcriptional regulator [Listeria grayi] gi|299815503|gb|EFI82742.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|306480778|emb|CBV37319.1| transcriptional regulator [Listeria grayi] Length = 67 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R+ N +QK++A ++ E G + S+ +L + +E S + I+ E Sbjct: 7 VKQLREDRNLSQKDLAEALEVSRQTIHAIEKGKYNPSLELSLCIAKYFETSIENIFYLEE 66 Query: 96 I 96 Sbjct: 67 R 67 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 35/66 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K +R+D+ +SQ + + L + T+ E+G+ P ++ + I + + ++ Sbjct: 1 MKVFNVVKQLREDRNLSQKDLAEALEVSRQTIHAIEKGKYNPSLELSLCIAKYFETSIEN 60 Query: 172 IYFGDE 177 I++ +E Sbjct: 61 IFYLEE 66 >gi|228942196|ref|ZP_04104736.1| hypothetical protein bthur0008_48270 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975125|ref|ZP_04135684.1| hypothetical protein bthur0003_48730 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981764|ref|ZP_04142059.1| hypothetical protein bthur0002_49230 [Bacillus thuringiensis Bt407] gi|228777876|gb|EEM26148.1| hypothetical protein bthur0002_49230 [Bacillus thuringiensis Bt407] gi|228784646|gb|EEM32666.1| hypothetical protein bthur0003_48730 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817530|gb|EEM63615.1| hypothetical protein bthur0008_48270 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 79 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFN 61 Query: 85 ISFDWIYD 92 + + I+ Sbjct: 62 VPVEEIFT 69 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK++G T+S E+G P I + KI Q+ Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIF 60 Query: 166 KKHLDWIYF 174 ++ I+ Sbjct: 61 NVPVEEIFT 69 >gi|120610433|ref|YP_970111.1| putative prophage repressor [Acidovorax citrulli AAC00-1] gi|120588897|gb|ABM32337.1| phage repressor protein [Acidovorax citrulli AAC00-1] Length = 230 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K + R++ R+ TQ +A AN + + E+G+ R L + +S W Sbjct: 11 KTIAERLRAARERAGLTQPALAQRANVSQGTIGNIESGLRK-RPRDLLAIAAALHVSPLW 69 Query: 90 IYDGEVIDRRYEDVTN 105 + G+ + D N Sbjct: 70 LETGQGLMHGDHDQAN 85 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL++ R+ G++Q + + T+ N E G + I W+ G Sbjct: 15 ERLRAARERAGLTQPALAQRANVSQGTIGNIESGLRK-RPRDLLAIAAALHVSPLWLETG 73 >gi|50954710|ref|YP_061998.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951192|gb|AAT88893.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 184 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G R+ +R ++ + +A + ++ E G+ S+R L + S Sbjct: 6 RVIGERLHQLRVERGRSVRALARETGVSATLLSQIERGLSDPSLRTLRALAGVFGTSVST 65 Query: 90 IYDG 93 ++D Sbjct: 66 LFDD 69 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG RL +R ++G S + G+ + LS E+G + P ++ R + V + Sbjct: 5 CRVIGERLHQLRVERGRSVRALARETGVSATLLSQIERGLSDPSLRTLRALAGVFGTSVS 64 Query: 171 WIYFGDEVIVPKSIKRAKGNQS 192 ++ D+++ + GN+S Sbjct: 65 TLF--DDLVPVVAQVSVPGNRS 84 >gi|77459247|ref|YP_348754.1| XRE family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383250|gb|ABA74763.1| putative HTH-type regulatory potein [Pseudomonas fluorescens Pf0-1] Length = 84 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + Q + I+ +R+ N TQ+++A+ A + V+ E + S+ L Sbjct: 1 MTQDYEQLRLQLAENIRLMRRVKNLTQEQLALMAEVDRTYVSQIERCTGNPSLLVLCKLA 60 Query: 81 NEYEISFDWIY 91 N +EI+ D + Sbjct: 61 NIFEITADQLL 71 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 28/64 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R+ K ++Q + + + + +S E+ P + K+ + + D + Sbjct: 14 ENIRLMRRVKNLTQEQLALMAEVDRTYVSQIERCTGNPSLLVLCKLANIFEITADQLLVE 73 Query: 176 DEVI 179 +++ Sbjct: 74 SDIL 77 >gi|30265200|ref|NP_847577.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778398|ref|YP_022067.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|30259877|gb|AAP29063.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47552103|gb|AAT34542.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] Length = 70 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +++P + ++K +RK ++Q+E K + + T+ E P ++ + KI + Sbjct: 1 MKVEPMGVKNKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFG 60 Query: 167 KHLDWIYFGD 176 ++ I+ + Sbjct: 61 VKVEEIFTLE 70 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 10 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 69 Query: 94 E 94 E Sbjct: 70 E 70 >gi|49475033|ref|YP_033074.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49237838|emb|CAF27033.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 138 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 2/99 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTRI+ R TQ+++ + +E G + ++ + + Sbjct: 15 VGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQAIAEIMDVPVSYFF 74 Query: 92 DG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D ++ +D + ++ +R +S Sbjct: 75 DKGVGTQQVEGFAESDNDFMDFCSSSEGIQLMRAFTNIS 113 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R G++Q + G+ LG+ + YE+G + I ++ + + + Sbjct: 19 IRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQAIAEIMDVPVSYFF 74 >gi|47570199|ref|ZP_00240853.1| cI-like repressor [Bacillus cereus G9241] gi|228983330|ref|ZP_04143544.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229153853|ref|ZP_04281984.1| Transcriptional regulator Xre [Bacillus cereus ATCC 4342] gi|47553143|gb|EAL11540.1| cI-like repressor [Bacillus cereus G9241] gi|228629657|gb|EEK86353.1| Transcriptional regulator Xre [Bacillus cereus ATCC 4342] gi|228776444|gb|EEM24796.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 67 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S S + + + +IS D + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKISIDELMP 66 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ RK KG +Q F K LG+ S L E+G P ++ + K +D + Sbjct: 8 RRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKISIDELM 65 >gi|296128010|ref|YP_003635260.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296019825|gb|ADG73061.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 91 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V RI +R +++++A V E G S S+ AL + +++ + ++ Sbjct: 18 VHNRISVLRAERGVSRRQLADALGVHYQTVGYLERGEYSPSLHLALRIAAFFDVPVEVLF 77 Query: 92 DGEVIDRRYEDVTN 105 + R T+ Sbjct: 78 SLDPFPRIGGGPTS 91 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ R+ +R ++G+S+ + LG+ T+ E+G P + A +I ++ + Sbjct: 17 AVHNRISVLRAERGVSRRQLADALGVHYQTVGYLERGEYSPSLHLALRIAAFFDVPVEVL 76 Query: 173 YFGD 176 + D Sbjct: 77 FSLD 80 >gi|229186773|ref|ZP_04313930.1| Transcription regulator [Bacillus cereus BGSC 6E1] gi|228596708|gb|EEK54371.1| Transcription regulator [Bacillus cereus BGSC 6E1] Length = 137 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I D RK NN +Q+++A A++ +E + I + L E IS D + Sbjct: 4 KISKSILDYRKRNNLSQEQLASKIGVTRQAISKWEQEKGTPDIENLILLSEEMNISLDNL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 G + K + L Sbjct: 64 IKGNNGIKERIMNNEKAIKIHLLVILFL 91 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I + RK +SQ + +G+ +S +EQ + P+I+ + + LD Sbjct: 3 MKISKSILDYRKRNNLSQEQLASKIGVTRQAISKWEQEKGTPDIENLILLSEEMNISLDN 62 Query: 172 IYFGDEVIVPKSIKRAK 188 + G+ I + + K Sbjct: 63 LIKGNNGIKERIMNNEK 79 >gi|220919779|ref|YP_002495082.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] gi|219952199|gb|ACL62590.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 204 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 35/79 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++++R++ T ++++ + S+++ E S ++ + YEI I+ Sbjct: 22 LGQRLRELRRSRKLTLQQVSDRSGISLSSLSKIERDELSPTVTTLERIAAGYEIDSAAIF 81 Query: 92 DGEVIDRRYEDVTNKKRLD 110 G R + R D Sbjct: 82 GGREAVHRAPGRRSITRAD 100 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 4/89 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R+ + ++ + G+ S+LS E+ P + +I + I+ G Sbjct: 24 QRLRELRRSRKLTLQQVSDRSGISLSSLSKIERDELSPTVTTLERIAAGYEIDSAAIFGG 83 Query: 176 DEVIV----PKSIKRAKGNQSSKKSKKDK 200 E + +SI RA G +S D Sbjct: 84 REAVHRAPGRRSITRADGGRSMPTGTCDN 112 >gi|322832298|ref|YP_004212325.1| Cupin 2 conserved barrel domain protein [Rahnella sp. Y9602] gi|321167499|gb|ADW73198.1| Cupin 2 conserved barrel domain protein [Rahnella sp. Y9602] Length = 185 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q++ A + SA++ E S ++ L Y +S + Sbjct: 9 GRRLSEIRQQLGMSQRKAAELSGLTHSAISTIEQDKVSPAVSTLQKLLRVYGLSLSEFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 E V N L Sbjct: 69 EEHKSNAPRIVINAADL 85 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ GMSQ + +L G+ +S +S EQ + P + +K+ +V L Sbjct: 6 LAPGRRLSEIRQQLGMSQRKAAELSGLTHSAISTIEQDKVSPAVSTLQKLLRVYGLSLSE 65 Query: 172 IYFGD 176 + + Sbjct: 66 FFAEE 70 >gi|310827503|ref|YP_003959860.1| hypothetical protein ELI_1914 [Eubacterium limosum KIST612] gi|308739237|gb|ADO36897.1| hypothetical protein ELI_1914 [Eubacterium limosum KIST612] Length = 122 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +K IRK MSQ EFGK +G+ +T+ E P + I V D++ + Sbjct: 1 MNNIKKIRKMLNMSQEEFGKRIGLSRATVGRIESEEARPTERTIVTICSVFHIRRDYLLY 60 Query: 175 GDEVIVPKS 183 G E I KS Sbjct: 61 GKEPIWEKS 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK IRK N +Q+E + V E+ + R + + + + I D++ G Sbjct: 2 NNIKKIRKMLNMSQEEFGKRIGLSRATVGRIESEEARPTERTIVTICSVFHIRRDYLLYG 61 Query: 94 EVI 96 + Sbjct: 62 KEP 64 >gi|304397398|ref|ZP_07379276.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304355016|gb|EFM19385.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 185 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 29/77 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR+ +Q+ +A A SA++ E S ++ L Y +S + Sbjct: 9 GRRLAQIRQTLGLSQRRVAEQAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRL 109 D + + L Sbjct: 69 EPKPDAEPKVIVRPGDL 85 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ G+SQ + G+ +S +S EQ + P + +K+ +V L Sbjct: 6 LAPGRRLAQIRQTLGLSQRRVAEQAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSE 65 Query: 172 IYFG-DEVIVPKSIKR 186 + PK I R Sbjct: 66 FFSEPKPDAEPKVIVR 81 >gi|262282190|ref|ZP_06059959.1| transcription regulator [Streptococcus sp. 2_1_36FAA] gi|262262644|gb|EEY81341.1| transcription regulator [Streptococcus sp. 2_1_36FAA] Length = 71 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALF 59 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+K MSQ+E K +G+ T++ E + P ++ + + L+ +++ Sbjct: 1 MNRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALFW 60 Query: 175 GDEVIVPKS 183 ++ S Sbjct: 61 DPQLTDEDS 69 >gi|257464093|ref|ZP_05628477.1| MerR family transcriptional regulator [Fusobacterium sp. D12] gi|317061612|ref|ZP_07926097.1| transcriptional regulator [Fusobacterium sp. D12] gi|313687288|gb|EFS24123.1| transcriptional regulator [Fusobacterium sp. D12] Length = 184 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 35/99 (35%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Y ++G IK+IR + KE+A + S ++ E G + S+ + E+ Sbjct: 2 NYEINIGKTIKNIRISKGLLLKEVASKCDISSSMLSQIEKGNANPSLNTIKAIAQALEVP 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + + K+ + + + K Sbjct: 62 LFKFFINSEETKYTFHIVKKEERKRISTENVIYELLTPK 100 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K+IR KG+ E + +S LS E+G P + + I Q + L + Sbjct: 9 KTIKNIRISKGLLLKEVASKCDISSSMLSQIEKGNANPSLNTIKAIAQALEVPLFKFFIN 68 Query: 176 DEVIV 180 E Sbjct: 69 SEETK 73 >gi|291456538|ref|ZP_06595928.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] gi|291381815|gb|EFE89333.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] Length = 137 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I+ RK TQ ++A E AV +E+G+ + + + +S + + Sbjct: 3 VGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIADTLGVSVNAL 61 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ RK +GM+Q + + +G+ + +YE G + + I ++ Sbjct: 1 MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIADTLGVSVNA 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|255280080|ref|ZP_05344635.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255269171|gb|EET62376.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 137 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 1/109 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + G + +RKA +Q E+A L+S +E G + L L + +S D Sbjct: 14 YVEFGNNMAKLRKARGLSQAEIAAALGTLQSTYAGWEAGTRKVQLTTMLQLSKFFGVSID 73 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQIEFGKLL 136 + + + ++ + D + + + E L Sbjct: 74 VLIGTQKFVNVPSEKSSCELNDKEKKLVDIYRELNTAGKQKLQERADEL 122 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 1/108 (0%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 E + + G + +RK +G+SQ E LG ST + +E G ++ Sbjct: 1 MGRERKVESRGPEYVEFGNNMAKLRKARGLSQAEIAAALGTLQSTYAGWEAGTRKVQLTT 60 Query: 158 ARKIKQVTKKHLDWIYFGDE-VIVPKSIKRAKGNQSSKKSKKDKKSSN 204 ++ + +D + + V VP + N KK + N Sbjct: 61 MLQLSKFFGVSIDVLIGTQKFVNVPSEKSSCELNDKEKKLVDIYRELN 108 >gi|187476768|ref|YP_784792.1| transcriptional regulator [Bordetella avium 197N] gi|115421354|emb|CAJ47859.1| putative transcriptional regulator [Bordetella avium 197N] Length = 136 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K R++ R TQ+++A +SA+ +E G S R L +S DW Sbjct: 2 KTFSDRLRQARVLRGYTQQDLARICGLSQSAIGSYETGQR-LSSRSIRRLALALNVSLDW 60 Query: 90 IYDGEVID 97 + G+ Sbjct: 61 LEMGQGPM 68 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ R +G +Q + ++ G+ S + +YE G+ + + R++ LDW+ Sbjct: 4 FSDRLRQARVLRGYTQQDLARICGLSQSAIGSYETGQRL-SSRSIRRLALALNVSLDWLE 62 Query: 174 FGDEVIVP 181 G + P Sbjct: 63 MGQGPMGP 70 >gi|304321631|ref|YP_003855274.1| XRE family transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303300533|gb|ADM10132.1| transcriptional regulator, XRE family protein [Parvularcula bermudensis HTCC2503] Length = 226 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 31/101 (30%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P + +G RIK RK Q+ + + V +E + L + Sbjct: 9 APLDDEPIDTIGQRIKAARKRCRLNQENLGRELGVSQPTVANWEADIHQPRPFMLGKLAD 68 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 E++ W+ G+ D L + + R Sbjct: 69 RLEVTVGWLAGGDEGGSVSVDHPMASYLRRPLRHVPIYNAR 109 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K+ RK ++Q G+ LG+ T++N+E P K+ + + W+ G Sbjct: 21 QRIKAARKRCRLNQENLGRELGVSQPTVANWEADIHQPRPFMLGKLADRLEVTVGWLAGG 80 Query: 176 DE 177 DE Sbjct: 81 DE 82 >gi|115351079|ref|YP_772918.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115281067|gb|ABI86584.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 219 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 33/89 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++D+R T +A + S ++L E S + L +S Sbjct: 14 INERIARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSL 73 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 ++ GE D + + + + + A Sbjct: 74 AGLFGGERDDAPAQPLVRRAQQAEWRDPA 102 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 4/99 (4%) Query: 101 EDVTNKKRLDPYAIGARL----KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + + +D I R+ + +R +G + G+ S +S E+ P Sbjct: 1 MQESTRPPVDDTGINERIARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASASPTAV 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 K+ L ++ G+ P + Q+ + Sbjct: 61 VLDKLAAGLGVSLAGLFGGERDDAPAQPLVRRAQQAEWR 99 >gi|229589612|ref|YP_002871731.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229361478|emb|CAY48354.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 65 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R + G SQ + + LG+ T++ E GR P + A KI +V ++ ++ I+ Sbjct: 1 MNNLMRQLRSELGWSQADLAERLGVSRQTINAIETGRYDPSLPLAFKIAKVFERPIEGIF 60 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ +R +Q ++A +N E G S+ A + +E + I++ Sbjct: 5 MRQLRSELGWSQADLAERLGVSRQTINAIETGRYDPSLPLAFKIAKVFERPIEGIFE 61 >gi|229521883|ref|ZP_04411300.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM 11079-80] gi|229340808|gb|EEO05813.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM 11079-80] Length = 181 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K +RK+ + A ++ + E G S +I + + +E SF Sbjct: 6 FKSQIANQLKKLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFEASF 65 Query: 88 DWIYDGEVI 96 + + Sbjct: 66 SAFFANDPQ 74 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK +RK +G+S +L G+ + L E+G + P I KI + Sbjct: 5 MFKSQIANQLKKLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFEAS 64 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 65 FSAFFANDPQLLSSE 79 >gi|228969784|ref|ZP_04130548.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228789936|gb|EEM37754.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 90 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG I+ +RK TQ+E+A N ++ + E G + S+ + EIS D I+ Sbjct: 2 VGENIRILRKKRGLTQEELAERINLQQAYIGGIERGERNISMLTLQKIAVGLEISPDKIF 61 Query: 92 D 92 + Sbjct: 62 N 62 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++ +RK +G++Q E + + + + + E+G + +KI + D I Sbjct: 1 MVGENIRILRKKRGLTQEELAERINLQQAYIGGIERGERNISMLTLQKIAVGLEISPDKI 60 Query: 173 Y 173 + Sbjct: 61 F 61 >gi|229032669|ref|ZP_04188632.1| hypothetical protein bcere0028_47050 [Bacillus cereus AH1271] gi|228728668|gb|EEL79681.1| hypothetical protein bcere0028_47050 [Bacillus cereus AH1271] Length = 79 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 31/68 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFN 61 Query: 85 ISFDWIYD 92 ++ + I+ Sbjct: 62 VTVEEIFT 69 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI Q+ Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIF 60 Query: 166 KKHLDWIYF---GDEVIVP 181 ++ I+ G+E Sbjct: 61 NVTVEEIFTLVEGEEDDEE 79 >gi|228988281|ref|ZP_04148376.1| hypothetical protein bthur0001_49380 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158633|ref|ZP_04286691.1| hypothetical protein bcere0010_48060 [Bacillus cereus ATCC 4342] gi|229169747|ref|ZP_04297447.1| hypothetical protein bcere0007_46910 [Bacillus cereus AH621] gi|229175726|ref|ZP_04303232.1| hypothetical protein bcere0006_48020 [Bacillus cereus MM3] gi|228607677|gb|EEK64993.1| hypothetical protein bcere0006_48020 [Bacillus cereus MM3] gi|228613786|gb|EEK70911.1| hypothetical protein bcere0007_46910 [Bacillus cereus AH621] gi|228624617|gb|EEK81386.1| hypothetical protein bcere0010_48060 [Bacillus cereus ATCC 4342] gi|228771453|gb|EEM19924.1| hypothetical protein bthur0001_49380 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 79 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 31/68 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++++R + +Q ++ ++L E G + SI +L + + + Sbjct: 2 KKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFN 61 Query: 85 ISFDWIYD 92 + + I+ Sbjct: 62 VPVEEIFT 69 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ +R +SQ + GK +G T+S E+G P I + KI + Sbjct: 1 MKKREDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIF 60 Query: 166 KKHLDWIYF---GDEVIVP 181 ++ I+ G+E Sbjct: 61 NVPVEEIFTLVEGEEDDEE 79 >gi|149276297|ref|ZP_01882441.1| transcriptional regulator [Pedobacter sp. BAL39] gi|149232817|gb|EDM38192.1| transcriptional regulator [Pedobacter sp. BAL39] Length = 258 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 27/76 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +K +RK TQ++ A S + +E + ++++ D Sbjct: 3 NISANLKYLRKKKGHTQQQFADAMGIKRSLIGAYEEDRAEPKYDLLKKIAEYFDLTIDEF 62 Query: 91 YDGEVIDRRYEDVTNK 106 + V D ++ Sbjct: 63 INETVNDNWKPKPKSQ 78 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 39/94 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I A LK +RK KG +Q +F +G+ S + YE+ R P+ +KI + +D Sbjct: 1 MSNISANLKYLRKKKGHTQQQFADAMGIKRSLIGAYEEDRAEPKYDLLKKIAEYFDLTID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 K +++G+ S K N Sbjct: 61 EFINETVNDNWKPKPKSQGSNLRILSISVDKDDN 94 >gi|134100678|ref|YP_001106339.1| HTH DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291006518|ref|ZP_06564491.1| HTH DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|37595051|gb|AAQ94242.1| helix-turn-helix regulator [Saccharopolyspora erythraea] gi|133913301|emb|CAM03414.1| HTH transcriptional regulator, XRE family, cupin domain [Saccharopolyspora erythraea NRRL 2338] Length = 196 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K VG ++ +R + E+A A + ++ E G + ++ L E+ Sbjct: 2 ELVKVVGANLRAVRSVRGLSLSEVARRAAIGKGTLSELEAGQRNPTLETLYALAQVLEVP 61 Query: 87 FDWIY 91 + Sbjct: 62 LGELL 66 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A L+++R +G+S E + + TLS E G+ P ++ + QV + L + Sbjct: 9 ANLRAVRSVRGLSLSEVARRAAIGKGTLSELEAGQRNPTLETLYALAQVLEVPLGELLVE 68 Query: 176 DE 177 E Sbjct: 69 TE 70 >gi|307293728|ref|ZP_07573572.1| transcriptional regulator, XRE family [Sphingobium chlorophenolicum L-1] gi|306879879|gb|EFN11096.1| transcriptional regulator, XRE family [Sphingobium chlorophenolicum L-1] Length = 467 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G +++ +R+ Q MA S +N E + + L L N Y+I Sbjct: 9 LGPKLRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLLRLANVYDIDI 64 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 26/56 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R++ G++Q + LG+ S L++ E+ + + ++ V + Sbjct: 13 LRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLLRLANVYDIDIRDFV 68 >gi|300697493|ref|YP_003748154.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074217|emb|CBJ53762.1| putative transcriptional regulator [Ralstonia solanacearum CFBP2957] Length = 201 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG ++ +R+ + E++ A +S ++ E + + ++ L N +S Sbjct: 18 PAVGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTD 77 Query: 90 IYDG 93 G Sbjct: 78 FLAG 81 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G L+++R+ + +S E + G+ S LS E+ P + ++ L Sbjct: 19 AVGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 78 Query: 173 YFGDEVIVP 181 G + P Sbjct: 79 LAGGDGERP 87 >gi|297585472|ref|YP_003701252.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143929|gb|ADI00687.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 182 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 2/92 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +I+ R T KE++ S ++ E G S +I + + + Sbjct: 5 DLARQIRVSRTNAGLTLKELSEKTGLSVSFISQVERGTSSPAISSLKKIADGLNVPITSF 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + E + ++ A K IR Sbjct: 65 FTPEQNTTYTSVASEQRSFRIDDSPA--KYIR 94 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 33/80 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +++ R + G++ E + G+ S +S E+G + P I +KI Sbjct: 1 MTESDLARQIRVSRTNAGLTLKELSEKTGLSVSFISQVERGTSSPAISSLKKIADGLNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAK 188 + + ++ S+ + Sbjct: 61 ITSFFTPEQNTTYTSVASEQ 80 >gi|294013107|ref|YP_003546567.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676437|dbj|BAI97955.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 471 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G +++ +R+ Q MA S +N E + + L L N Y+I Sbjct: 9 LGPKLRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLLRLANVYDIDI 64 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 26/56 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R++ G++Q + LG+ S L++ E+ + + ++ V + Sbjct: 13 LRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLLRLANVYDIDIRDFV 68 >gi|291549308|emb|CBL25570.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 76 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +R+ N+KTQ+++A ++ +E G IR+ + L Y +S D+ Sbjct: 9 MRGLREDNDKTQQDIADFLGISQTMYARYERGANELPIRHLIKLCRYYHVSADYFL 64 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + ++ +R+D +Q + LG+ + + YE+G I+ K+ + D Sbjct: 2 NKSYIDIMRGLREDNDKTQQDIADFLGISQTMYARYERGANELPIRHLIKLCRYYHVSAD 61 Query: 171 WIY 173 + Sbjct: 62 YFL 64 >gi|260575913|ref|ZP_05843908.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259021839|gb|EEW25140.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 465 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 37/119 (31%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++IR TQK A +N EN S L L E+ + Sbjct: 9 GVKLREIRARLGLTQKAFADKLGVSLPYLNQMENNHRPVSASVVLALAQEFGTDVTELTT 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + + A+ L +R + L + + ++E+ + Sbjct: 69 NDAERIVSDMREALADPVFAAVPPPLADLRLAASNAPALARAFLDLHRAYRQSHERLAS 127 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 24/70 (34%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ IR G++Q F LG+ L+ E + Q + + D Sbjct: 12 LREIRARLGLTQKAFADKLGVSLPYLNQMENNHRPVSASVVLALAQEFGTDVTELTTNDA 71 Query: 178 VIVPKSIKRA 187 + ++ A Sbjct: 72 ERIVSDMREA 81 >gi|317048764|ref|YP_004116412.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316950381|gb|ADU69856.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 185 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 27/76 (35%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR+ +Q+ +A + SA++ E S ++ L Y +S + Sbjct: 9 GRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKR 108 D + Sbjct: 69 EPKQDPTPRVIVRPND 84 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR++ G+SQ +L G+ +S +S EQ + P + +K+ +V L Sbjct: 6 LAPGRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSE 65 Query: 172 IYFG-DEVIVPKSIKRAKGN 190 + + P+ I R Sbjct: 66 FFSEPKQDPTPRVIVRPNDR 85 >gi|257792947|ref|YP_003186346.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479639|gb|ACV59957.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 223 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 1/91 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G ++ +RK N T ++A+ + + ++ ENG L + ++ ++ Sbjct: 3 QFGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQRGRPKPDTLKKLASALKVPYED 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + + T++ R + K Sbjct: 63 LLLHAGVLNEQISRTSESRDLKPVDPSWYKR 93 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 1/96 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHL 169 G L+ +RK++ ++ + G+ ++ +S E R P+ +K+ K Sbjct: 1 MSQFGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQRGRPKPDTLKKLASALKVPY 60 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + + V+ + + ++ K P Sbjct: 61 EDLLLHAGVLNEQISRTSESRDLKPVDPSWYKRQVP 96 >gi|326201358|ref|ZP_08191230.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988926|gb|EGD49750.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 119 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYEISFDWI 90 G R++++R+ + TQK++ N + +E L L + + +S D++ Sbjct: 3 FGDRLRELREERDITQKKLGELINVSARVIGYYEANDRFPRDENVLKTLADFFNVSVDYL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 I +D+ + ++ L Sbjct: 63 VGRTEIRFSSDDIVAESKISYNLDVKGL 90 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLD 170 G RL+ +R+++ ++Q + G+L+ + + YE P + K + +D Sbjct: 1 MRFGDRLRELREERDITQKKLGELINVSARVIGYYEANDRFPRDENVLKTLADFFNVSVD 60 Query: 171 WIYFGDEVIVPKS 183 ++ E+ Sbjct: 61 YLVGRTEIRFSSD 73 >gi|251781701|ref|YP_002996003.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390330|dbj|BAH80789.1| transcriptional regulator, Cro/CI family [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411061|gb|EFY01969.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126498|gb|ADX23795.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 68 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK+ R K +SQ L+G+ T++ E+G P I I +V K LD +++ + Sbjct: 6 LKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWEVD 65 Query: 178 VI 179 Sbjct: 66 DT 67 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 23/57 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R + +Q+ +A + E G + +I + + + + D ++ Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|213031130|emb|CAR31467.1| hypothetical protein [Streptococcus pneumoniae] Length = 158 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|209549722|ref|YP_002281639.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535478|gb|ACI55413.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 264 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 27/56 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G +++ R+ +Q ++A+ A+ + ++ E+G + S L+L + Sbjct: 8 LGDHLREWRQRRRMSQLDLALEADISQRHLSFIESGRATPSRDMLLHLAERLGVPL 63 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R+ + MSQ++ + LS E GR P + + L Sbjct: 11 HLREWRQRRRMSQLDLALEADISQRHLSFIESGRATPSRDMLLHLAERLGVPL 63 >gi|167588944|ref|ZP_02381332.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 183 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R++ +R + +Q+E+A A ++L E G S S+ L +S Sbjct: 4 EVAERLRYVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRR 99 + E+++ R Sbjct: 64 FTFELVESR 72 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 7 ERLRYVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 66 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 67 ELVESRTVVSRRDE 80 >gi|163737462|ref|ZP_02144879.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] gi|161388988|gb|EDQ13340.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] Length = 123 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 23/134 (17%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E G S + + + + + Sbjct: 9 VGKRIRHRRWLIGMTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDALSVPVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +G D + D + L + S + E R Sbjct: 69 EGLQDDDAPASDKAQVPDDLMGDK------------------EALDLVRSYYAIPENQRR 110 Query: 152 IPEIKPARKIKQVT 165 ++ +V Sbjct: 111 R-----LFELARVL 119 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R GM+Q + +L+G+ + YE G I + + + G Sbjct: 11 KRIRHRRWLIGMTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDALSVPVSFFFEG 70 >gi|170743046|ref|YP_001771701.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197320|gb|ACA19267.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 206 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G I+ +RKA N + E+A + +S ++ E + ++ L ++S + Sbjct: 23 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIE 80 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-F 174 ++ +RK +S E + G+ S +S E+ T P + ++ Q ++ + Sbjct: 26 KTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVLAT 85 Query: 175 GDEVIVPKSIKRAK 188 GDE + RA Sbjct: 86 GDEEPFIEKSSRAD 99 >gi|157959968|ref|YP_001500002.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157844968|gb|ABV85467.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 69 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + TQ ++A +N E G S+ A + +E+ + I++ Sbjct: 3 NRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYDPSLPLAFKVARLFEMPIEAIFED 62 Query: 94 EVI 96 E Sbjct: 63 ETE 65 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 35/67 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + + L + T++ E+G+ P + A K+ ++ + ++ I+ Sbjct: 1 MKNRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYDPSLPLAFKVARLFEMPIEAIF 60 Query: 174 FGDEVIV 180 + + Sbjct: 61 EDETEVA 67 >gi|22538118|ref|NP_688969.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22535025|gb|AAN00842.1|AE014281_11 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] Length = 359 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I R TQ++++ + ++ ++ +EN I Y + + ++++ D + Sbjct: 2 IGDTILFERTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILMAKLFDMTLDELV 61 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 R GM+Q + L + +T+S +E + P+I + ++ LD + + + Sbjct: 10 RTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILMAKLFDMTLDELVGFQKTLTD 69 Query: 182 KS 183 Sbjct: 70 SE 71 >gi|15672309|ref|NP_266483.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|116511183|ref|YP_808399.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|281490873|ref|YP_003352853.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12723193|gb|AAK04425.1|AE006269_10 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|116106837|gb|ABJ71977.1| Predicted transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|281374631|gb|ADA64151.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] gi|300069966|gb|ADJ59366.1| Transcriptional regulator, Cro/CI family protein [Lactococcus lactis subsp. cremoris NZ9000] gi|326405905|gb|ADZ62976.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 97 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 33/71 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I+++R+ ++ +Q+++A A+ +N EN + A L + D +++ Sbjct: 3 NKIRELRRLSHLSQEDVAHIAHVSRQTINAIENDKYDPELTLAFKLAETLGTTVDELFNY 62 Query: 94 EVIDRRYEDVT 104 + + ++ Sbjct: 63 QPTVVKRKEND 73 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +++ +R+ +SQ + + + T++ E + PE+ A K+ + +D ++ Sbjct: 1 MENKIRELRRLSHLSQEDVAHIAHVSRQTINAIENDKYDPELTLAFKLAETLGTTVDELF 60 Query: 174 FGDEVIVPKSIKRAKGN 190 P +KR + + Sbjct: 61 ----NYQPTVVKRKEND 73 >gi|313619243|gb|EFR90998.1| ans operon transcriptional repressor, putative [Listeria innocua FSL S4-378] Length = 131 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 36/102 (35%), Gaps = 1/102 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIRQPDLDMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 D++ + I ++ + + +R + ++ Sbjct: 61 DYLLGHQSIPTYAPSELQSEKDIAKRMIKISEDLRYEDDLNL 102 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIRQPDLDMVTQIATLYDVSVDYLLG 65 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKK 198 + + +K+ K Sbjct: 66 HQSIPTYAPSELQSEKDIAKRMIK 89 >gi|294499832|ref|YP_003563532.1| HTH-type transcriptional regulator AnsR [Bacillus megaterium QM B1551] gi|294349769|gb|ADE70098.1| HTH-type transcriptional regulator ansR (Ans operon repressor) [Bacillus megaterium QM B1551] Length = 118 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R+ +RK + + A +S +E+G S+ + + ++ S D++ Sbjct: 3 SRLAQLRKEKKWSLQYTADQLEIAKSTYAGYESGYRRPSLEALVTIAELFDTSTDYLLGK 62 Query: 94 EVID 97 E Sbjct: 63 EKEP 66 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +RL +RK+K S L + ST + YE G P ++ I ++ D++ Sbjct: 1 MLSRLAQLRKEKKWSLQYTADQLEIAKSTYAGYESGYRRPSLEALVTIAELFDTSTDYLL 60 Query: 174 FGDEV 178 ++ Sbjct: 61 GKEKE 65 >gi|293402278|ref|ZP_06646416.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304385|gb|EFE45636.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 153 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +RK + +Q+E+A + ++ +ENG + + A+ L Y IS D + Sbjct: 4 DKLIALRKKSGYSQQELADLLSLTRQTISNWENGQSAPTFDKAIELAAIYHISLDDL 60 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +L ++RK G SQ E LL + T+SN+E G++ P A ++ + LD + Sbjct: 1 MLKDKLIALRKKSGYSQQELADLLSLTRQTISNWENGQSAPTFDKAIELAAIYHISLDDL 60 >gi|227533628|ref|ZP_03963677.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188745|gb|EEI68812.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 209 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 6/90 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ + ++Q + + L + T+S++E R+ P+I +I LD Sbjct: 1 MQFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + D+ + + K +++D K Sbjct: 61 LLQEDQTMTDHY------DAIDKHAQRDNK 84 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ TQ ++A + ++ +EN I + + + Y+IS D + Sbjct: 2 QFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQL 61 Query: 91 YDGEVIDRRYED 102 + + D Sbjct: 62 LQEDQTMTDHYD 73 >gi|188584169|ref|YP_001927614.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179347667|gb|ACB83079.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 209 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +RKA N + E+A + +S ++ E + ++ L ++S + + Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85 Query: 91 YDGEVIDRRYEDVT 104 + E + Sbjct: 86 LATSDEEPFIERFS 99 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-F 174 ++ +RK +S E + G+ S +S E+ T P + ++ Q ++ + Sbjct: 29 KTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVLAT 88 Query: 175 GDEVIVPKSIKRAKGNQ 191 DE + RA + Sbjct: 89 SDEEPFIERFSRADTPR 105 >gi|220918294|ref|YP_002493598.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|219956148|gb|ACL66532.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 477 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 30/66 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R+ + +G +++ +R+ N TQ ++A S + L E+ + L + ++ Sbjct: 1 MREPGQHLGAKVRALRRQRNLTQVQLADRLGISASYLTLIEHNRRPLPALLLIKLADLFQ 60 Query: 85 ISFDWI 90 + + Sbjct: 61 LDLKSL 66 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 27/54 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 A+++++R+ + ++Q++ LG+ S L+ E R K+ + + L Sbjct: 10 AKVRALRRQRNLTQVQLADRLGISASYLTLIEHNRRPLPALLLIKLADLFQLDL 63 >gi|124009645|ref|ZP_01694317.1| DNA-binding protein [Microscilla marina ATCC 23134] gi|123984695|gb|EAY24680.1| DNA-binding protein [Microscilla marina ATCC 23134] Length = 85 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + RK + +Q E+A + +E SI A + N E+S D++ Sbjct: 3 FGENVAVERKKKDFSQGELAKQVGITAVTIGRYERDEIKPSIDIATKIANALEVSLDYLV 62 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 35/83 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G + RK K SQ E K +G+ T+ YE+ P I A KI + LD+ Sbjct: 1 MSFGENVAVERKKKDFSQGELAKQVGITAVTIGRYERDEIKPSIDIATKIANALEVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + E ++ K + + K Sbjct: 61 LVGNSETVLDKPLIFKNFLKKRK 83 >gi|52143068|ref|YP_083761.1| MerR family transcriptional regulator [Bacillus cereus E33L] gi|206973592|ref|ZP_03234510.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222095997|ref|YP_002530054.1| transcriptional regulator, merr family [Bacillus cereus Q1] gi|51976537|gb|AAU18087.1| possible transcriptional regulator, MerR family [Bacillus cereus E33L] gi|206747748|gb|EDZ59137.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221240055|gb|ACM12765.1| possible transcriptional regulator, MerR family [Bacillus cereus Q1] gi|324326426|gb|ADY21686.1| putative transcriptional regulator, MerR family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 186 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 10/113 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK N T +E A A S ++ E G + S+ + + Sbjct: 6 LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 D + + ++ N + +K+ + M + Sbjct: 66 INEIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNKQAN 118 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ +E+ Sbjct: 13 YRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLFI-NEIDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENND 90 >gi|116688222|ref|YP_833845.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116646311|gb|ABK06952.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 109 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ R A +K+Q+ +A A+ + ++ E G+ + S+ + ++ ++ Sbjct: 20 LGKRIKECRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICYSLNVTLGELF 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +R A +K R Sbjct: 80 ---APLDGVSLKPTGERRANAATPPEIKRSR 107 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K R SQ + + +S+ E+G P ++ I L Sbjct: 18 IALGKRIKECRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICYSLNVTLGE 77 Query: 172 IY 173 ++ Sbjct: 78 LF 79 >gi|291539157|emb|CBL12268.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 184 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 37/89 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G I+ R+A TQKE A + E + +E+G I + NE + + Sbjct: 5 EEIGKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQE 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + ++ T + + + + Sbjct: 65 LLFAKDTNTPKDNTTAEYPSYEFHTMSDV 93 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R+ + ++Q EF + LG T+ YE G + +I ++I + F Sbjct: 9 KAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQELLFA 68 Query: 176 DEVIVPKSIKRAK 188 + PK A+ Sbjct: 69 KDTNTPKDNTTAE 81 >gi|229070617|ref|ZP_04203855.1| hypothetical protein bcere0025_28000 [Bacillus cereus F65185] gi|228712522|gb|EEL64459.1| hypothetical protein bcere0025_28000 [Bacillus cereus F65185] Length = 108 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 28/79 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ ++RK TQ +++ N + +E G + L + +S D ++ Sbjct: 4 LSKRLAELRKKQGYTQSDISHRLNIARTTYANWEYGKADPDADSIMNLAEIHNVSIDELF 63 Query: 92 DGEVIDRRYEDVTNKKRLD 110 ++ D Sbjct: 64 GRNAPLESKLELIKVAISD 82 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 33/72 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK +G +Q + L + +T +N+E G+ P+ + ++ +D Sbjct: 1 MSHLSKRLAELRKKQGYTQSDISHRLNIARTTYANWEYGKADPDADSIMNLAEIHNVSID 60 Query: 171 WIYFGDEVIVPK 182 ++ + + K Sbjct: 61 ELFGRNAPLESK 72 >gi|227873097|ref|ZP_03991391.1| hypothetical protein HMPREF6123_1330 [Oribacterium sinus F0268] gi|227841078|gb|EEJ51414.1| hypothetical protein HMPREF6123_1330 [Oribacterium sinus F0268] Length = 229 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 60/178 (33%), Gaps = 15/178 (8%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G +IK R Q ++A + ++ E G S+ L + + ++S D Sbjct: 19 FQTLGKQIKKYRVLRGLRQSDLAELIFSTTNTISRIEIGGIGCSLENLLRIADALQVSPD 78 Query: 89 WIYDGEVIDRR---YEDVTNKKRLDPYAIGARLKSI------RKDKGMSQIEFGKLLGMP 139 + G Y + K + L I ++ + +F K L M Sbjct: 79 ALLFGNFNPMYSRFYPYFWDMKEEILRKMEENLSEIFKEISSKEQLTFVERDFQKWLKMT 138 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + E + R D+++ +V P+ + + KK+K Sbjct: 139 KQSREEMEAQAKEQSEEELR-----YSVE-DYLFSATKVADPEEKVVEENPEEEKKTK 190 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 + +D +G ++K R +G+ Q + +L+ +T+S E G ++ Sbjct: 7 NENIPWIYRGIDFQTLGKQIKKYRVLRGLRQSDLAELIFSTTNTISRIEIGGIGCSLENL 66 Query: 159 RKIKQVTKKHLDWIYFGD 176 +I + D + FG+ Sbjct: 67 LRIADALQVSPDALLFGN 84 >gi|114799924|ref|YP_759016.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740098|gb|ABI78223.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 384 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G R++ R + TQ++ A + E G + L Y + Sbjct: 11 KELGERLRRARTRADVTQEQAAQIIGLSRPTLVAIEKGQRRPQPEELVALAAAYNVGVAE 70 Query: 90 IYDG 93 + Sbjct: 71 LLRR 74 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 +DP +G RL+ R ++Q + +++G+ TL E+G+ P+ + + Sbjct: 1 MTQGLSSVDPKELGERLRRARTRADVTQEQAAQIIGLSRPTLVAIEKGQRRPQPEELVAL 60 Query: 162 KQVTKKHLDWIY 173 + + Sbjct: 61 AAAYNVGVAELL 72 >gi|145595679|ref|YP_001159976.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305016|gb|ABP55598.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 83 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + V RI +R +++++A + E G S+ AL + +E+ + Sbjct: 3 ETVHNRIAVLRAERGISRRQLADALGVHYQTIGYLERGEFRPSLHLALRIAAYFEVPVEV 62 Query: 90 IYDGEVIDRRYEDVTNKKR 108 ++ E R + +R Sbjct: 63 VFSIEPFPRIGDATAGSRR 81 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ +R ++G+S+ + LG+ T+ E+G P + A +I + ++ ++ Sbjct: 6 HNRIAVLRAERGISRRQLADALGVHYQTIGYLERGEFRPSLHLALRIAAYFEVPVEVVFS 65 Query: 175 GD 176 + Sbjct: 66 IE 67 >gi|327542983|gb|EGF29431.1| transcriptional regulator, XRE family [Rhodopirellula baltica WH47] Length = 232 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 6/104 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R++ +R T E+A + Q +S ++ EN + S+ L + +S + Sbjct: 53 ELAQRLRQLRLDRGMTLDEVAQKSGQTKSWLSRVENFRITPSLPALADLASSLGVSTSSL 112 Query: 91 YDGEVIDR------RYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +G E ++ D L S R + M Sbjct: 113 LEGLDDRPQIICVRHDERKKIQRDPDSSIEYYSLASERTHRTMD 156 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 36/112 (32%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 +S + + + ++ + RL+ +R D+GM+ E + G S L Sbjct: 24 NVSLQSTRTEDSSSDPHNAAARGQAMNLVELAQRLRQLRLDRGMTLDEVAQKSGQTKSWL 83 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 S E R P + + + G + R + ++ Sbjct: 84 SRVENFRITPSLPALADLASSLGVSTSSLLEGLDDRPQIICVRHDERKKIQR 135 >gi|295094134|emb|CBK83225.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] gi|295104068|emb|CBL01612.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 279 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 ++ R++++ K + TQ ++A ESA++ F +G S + L + +E+S D+ Sbjct: 9 NIRQRMQELMKEHKITQAQLATRIGSTESAISRFVSGKTDKISTEHLLRIAKVFEVSTDF 68 Query: 90 IY 91 + Sbjct: 69 LL 70 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 I R++ + K+ ++Q + +G S +S + G+T + +I +V + D++ Sbjct: 10 IRQRMQELMKEHKITQAQLATRIGSTESAISRFVSGKTDKISTEHLLRIAKVFEVSTDFL 69 Query: 173 Y 173 Sbjct: 70 L 70 >gi|229173113|ref|ZP_04300664.1| Transcriptional regulator, XRE [Bacillus cereus MM3] gi|228610446|gb|EEK67717.1| Transcriptional regulator, XRE [Bacillus cereus MM3] Length = 186 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 29/87 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RK NN T +E A A S ++ E G + S+ + + ++ Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E+ ++ + Sbjct: 66 INEIDTDSLISKKKDRKKVYRENNDHI 92 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ +E+ Sbjct: 13 YRKKNNMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLFI-NEIDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENND 90 >gi|188495880|ref|ZP_03003150.1| helix-turn-helix domain protein [Escherichia coli 53638] gi|188491079|gb|EDU66182.1| helix-turn-helix domain protein [Escherichia coli 53638] Length = 164 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 3/103 (2%) Query: 11 LKSLQEYTLIITPEIRQ---YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG 67 ++ + EY L +Q + + ++ R+A T E+A + E + +E+G Sbjct: 59 MEFIHEYALSAASPAQQKQSFPESWLVNLRTQREACGLTTAELARLLDLDEEIIIQWESG 118 Query: 68 MCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 +I + L N W+ GEV ++ D Sbjct: 119 EYEPTISMLIPLANILGCDPMWLLTGEVTPPEQPKSEEQQHHD 161 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 3/112 (2%) Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 E I + + + + + L++ R+ G++ E +LL + Sbjct: 51 SKELGIEVMEFIHEYALSAASPAQQKQSFPESWLVN--LRTQREACGLTTAELARLLDLD 108 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + +E G P I + + W+ G EV P+ K + Sbjct: 109 EEIIIQWESGEYEPTISMLIPLANILGCDPMWLLTG-EVTPPEQPKSEEQQH 159 >gi|163757791|ref|ZP_02164880.1| Transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] gi|162285293|gb|EDQ35575.1| Transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] Length = 182 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +R + +++A + SA++ E G S + + + ++++ + Sbjct: 8 LADRLKQLRATRGWSLQQLADISGVSRSALSRIETGEVSPTAETLGAMSSAFQMTISQLL 67 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R +G S + + G+ S LS E G P + + + + + E Sbjct: 12 LKQLRATRGWSLQQLADISGVSRSALSRIETGEVSPTAETLGAMSSAFQMTISQLLAPVE 71 Query: 178 VIVPKSIKRAKGN 190 ++ + + Sbjct: 72 APFQPLVRAEEQS 84 >gi|160879054|ref|YP_001558022.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427720|gb|ABX41283.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 179 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK++R + TQ+E+A A + ++ E + S SI + + + + Sbjct: 2 KIGAKIKELRVQKSLTQEELADRAELSKGFISQLERDITSPSIATLVDILQCLGTNLEAF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + + +++ I Sbjct: 62 FTDTTSEQVVFKRGDYFEKVDNELNNKIEWI 92 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA++K +R K ++Q E + +S E+ T P I I Q +L+ Sbjct: 1 MKIGAKIKELRVQKSLTQEELADRAELSKGFISQLERDITSPSIATLVDILQCLGTNLEA 60 Query: 172 IYFG 175 + Sbjct: 61 FFTD 64 >gi|85375306|ref|YP_459368.1| transcriptional regulator, Cro/CI family protein [Erythrobacter litoralis HTCC2594] gi|84788389|gb|ABC64571.1| transcriptional regulator, Cro/CI family protein [Erythrobacter litoralis HTCC2594] Length = 66 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q+++A +VN E G S+ A + + + + + I+ Sbjct: 3 NRLKVLRAERDWSQQDLADRLGVSRQSVNAIETGRYDPSLPLAFRIADVFALRIEEIFQR 62 Query: 94 EVID 97 E + Sbjct: 63 ETEE 66 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ + LG+ +++ E GR P + A +I V ++ I+ Sbjct: 1 MKNRLKVLRAERDWSQQDLADRLGVSRQSVNAIETGRYDPSLPLAFRIADVFALRIEEIF 60 Query: 174 FGD 176 + Sbjct: 61 QRE 63 >gi|148265511|ref|YP_001232217.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399011|gb|ABQ27644.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 187 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 31/71 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+A T +++A + ++ EN S I + + + + Sbjct: 5 NIGAKIKELRRAIKLTLQDVANETGFSTALLSQIENNNISPPIATLDKIAHFFGVRIGHF 64 Query: 91 YDGEVIDRRYE 101 + + +E Sbjct: 65 FIESEEECPFE 75 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + Y IGA++K +R+ ++ + G + LS E P I KI Sbjct: 1 MPDYNIGAKIKELRRAIKLTLQDVANETGFSTALLSQIENNNISPPIATLDKIAHFFGVR 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + + E P + R Sbjct: 61 IGHFFIESEEECPFEVLR 78 >gi|42779585|ref|NP_976832.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47567216|ref|ZP_00237930.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|42735501|gb|AAS39440.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47556059|gb|EAL14396.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 83 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KDV +I ++R NN +Q +A +N EN S+ A L + D Sbjct: 17 RKDVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVD 76 Query: 89 WIYDGEV 95 ++ + Sbjct: 77 KLFLYKQ 83 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 21 KNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|329888684|ref|ZP_08267282.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328847240|gb|EGF96802.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 65 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ LG+ T++ E GR P + A KI ++ + ++ I+ Sbjct: 1 MKNRLKVLRAERDWSQAHLADELGVSRQTVNALETGRYDPSLPLAFKIARLFQMPIESIF 60 Query: 174 FGDE 177 +E Sbjct: 61 IDEE 64 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q +A VN E G S+ A + +++ + I+ Sbjct: 3 NRLKVLRAERDWSQAHLADELGVSRQTVNALETGRYDPSLPLAFKIARLFQMPIESIFID 62 Query: 94 EV 95 E Sbjct: 63 EE 64 >gi|296454298|ref|YP_003661441.1| Cro/CI family transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183729|gb|ADH00611.1| Transcriptional regulator, Cro/CI family [Bifidobacterium longum subsp. longum JDM301] Length = 65 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ RIK++R +Q +A + VN EN ++ A L E + D Sbjct: 1 MTEMENRIKELRVNLGLSQGTLARRCDVSRQTVNAIENNKYDPTLSLAFRLARELGATVD 60 Query: 89 WIYD 92 ++ Sbjct: 61 GLFT 64 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+K +R + G+SQ + + T++ E + P + A ++ + +D Sbjct: 1 MTEMENRIKELRVNLGLSQGTLARRCDVSRQTVNAIENNKYDPTLSLAFRLARELGATVD 60 Query: 171 WIYF 174 ++ Sbjct: 61 GLFT 64 >gi|170782465|ref|YP_001710798.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157034|emb|CAQ02207.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 107 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 5/106 (4%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + G+R+++ R+ +Q+ +A + +A+ E G + S+R + + Sbjct: 1 MVTTVSDAAAEFGSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + ++ + G D +D D A RL+ R +G Sbjct: 61 SGLDVDAGLLVTGLTADMLPQDDG-----DSPAELIRLERERDRRG 101 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G+R++ R+ G+SQ +L G+ + L E+G+ P ++ KI + Sbjct: 11 EFGSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIASGLDVDAGLL 70 Query: 173 YFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 G ++P+ + + ++D++ + P Sbjct: 71 VTGLTADMLPQDDGDSPAELIRLERERDRRGTTP 104 >gi|159044420|ref|YP_001533214.1| putative HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912180|gb|ABV93613.1| putative HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 215 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G ++ R+ T E++ ++ ENG S S+ L N + Sbjct: 20 KTLEAAIGRALRAFRREQGTTVVELSAATGLSTGMLSKIENGQTSPSLTTLQALANALSV 79 Query: 86 SFDWIYDGEVIDR 98 + G R Sbjct: 80 PLTAFFRGFEQSR 92 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG L++ R+++G + +E G+ LS E G+T P + + + L Sbjct: 25 AIGRALRAFRREQGTTVVELSAATGLSTGMLSKIENGQTSPSLTTLQALANALSVPLTAF 84 Query: 173 YFGDEVIVPKSIKRA-KGNQSSKKSKKDKKS 202 + G E RA +G ++ ++ + Sbjct: 85 FRGFEQSRAAVHTRAGEGAEAEREGTRANHH 115 >gi|160873452|ref|YP_001552768.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160858974|gb|ABX47508.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|315265681|gb|ADT92534.1| helix-turn-helix domain protein [Shewanella baltica OS678] Length = 191 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + + A ++ + E G S +I + + + IS + Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTP 71 Query: 96 IDR 98 + Sbjct: 72 QSQ 74 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK++R KG S + + G+ + + E+G + P I KI L Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 >gi|291518909|emb|CBK74130.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 104 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ G +IK+ R TQ ++A + ++ ENG + S+R +Y I+ D Sbjct: 2 NENYGEQIKNYRINLGMTQNQVAKELDVTPGYISNVENGRTAMSLRLLIYYSKLMGITLD 61 Query: 89 WIYDGEVIDRRYEDVTN 105 + + N Sbjct: 62 ELVGKLEPAYQKSATDN 78 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G ++K+ R + GM+Q + K L + +SN E GRT ++ ++ LD + Sbjct: 5 YGEQIKNYRINLGMTQNQVAKELDVTPGYISNVENGRTAMSLRLLIYYSKLMGITLDELV 64 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 E KS + K ++K Sbjct: 65 GKLEPAYQKSATDNALWNAIKTLNDNQKEK 94 >gi|228924835|ref|ZP_04087992.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834844|gb|EEM80326.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 131 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 35/86 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++++R + ++ I SA++ +E G + + + +S D+++ Sbjct: 6 FGQNLRNLRTLKGISLHKLGIELGVTGSAISSWELGNKEPNFDMVKKIAIYFLVSTDYLF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 + +V+D + +L G Sbjct: 66 NHQVLDNVEHEKAVVTQLAHKLYGKC 91 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G L+++R KG+S + G LG+ S +S++E G P +KI Sbjct: 1 MKGNIFGQNLRNLRTLKGISLHKLGIELGVTGSAISSWELGNKEPNFDMVKKIAIYFLVS 60 Query: 169 LDWIY 173 D+++ Sbjct: 61 TDYLF 65 >gi|227432755|ref|ZP_03914721.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351491|gb|EEJ41751.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 256 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + ++G +IK +RK N TQ++ A +V+ +E + L + ++++ Sbjct: 14 ETIMEIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKGYPTTEMMLLIIEKFDLP 73 Query: 87 FDWIYDGEVIDRRYEDVT 104 D+ D Sbjct: 74 LDFFIIPPTNSCEDNDEE 91 >gi|166367802|ref|YP_001660075.1| hypothetical protein MAE_50610 [Microcystis aeruginosa NIES-843] gi|166090175|dbj|BAG04883.1| hypothetical protein MAE_50610 [Microcystis aeruginosa NIES-843] Length = 73 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI--RYALYLRNEYEISFD 88 ++G R++ +R+ TQ+++A V+ +E G + L L S Sbjct: 2 ELGQRMQKLRENAGLTQRKLAERLGVTVQTVSNWETGHREPRMNPSQTLKLCQSLNCSLA 61 Query: 89 WI 90 + Sbjct: 62 QL 63 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI---KPARKIKQVTKKH 168 +G R++ +R++ G++Q + + LG+ T+SN+E G P + + K+ Q Sbjct: 1 MELGQRMQKLRENAGLTQRKLAERLGVTVQTVSNWETGHREPRMNPSQTL-KLCQSLNCS 59 Query: 169 LDWI 172 L + Sbjct: 60 LAQL 63 >gi|47567384|ref|ZP_00238097.1| repressor protein, putative [Bacillus cereus G9241] gi|47568454|ref|ZP_00239154.1| repressor protein, putative [Bacillus cereus G9241] gi|47554845|gb|EAL13196.1| repressor protein, putative [Bacillus cereus G9241] gi|47556005|gb|EAL14343.1| repressor protein, putative [Bacillus cereus G9241] Length = 65 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVRVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVRVEEIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|311742888|ref|ZP_07716696.1| DNA-binding protein [Aeromicrobium marinum DSM 15272] gi|311313568|gb|EFQ83477.1| DNA-binding protein [Aeromicrobium marinum DSM 15272] Length = 259 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R+A + +E++ S V+ E G+ S S+R + +E EIS D ++ Sbjct: 31 IGHRIRSAREAAGISVRELSRRLEVSPSHVSQVERGLASFSVRALYRVVSELEISMDSLF 90 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG R++S R+ G+S E + L + S +S E+G ++ ++ + +D Sbjct: 29 IAIGHRIRSAREAAGISVRELSRRLEVSPSHVSQVERGLASFSVRALYRVVSELEISMDS 88 Query: 172 IYFGDEVIVPKS 183 ++ G+ + VP+ Sbjct: 89 LF-GEVLPVPEV 99 >gi|261885710|ref|ZP_06009749.1| hypothetical protein CfetvA_11544 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 207 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R+ N +QKE A + +E G+ + L +++I ++ Sbjct: 2 IGNKIRALREENGISQKEFAKEFGIAYGTLQSYEYGLTKPKTDFIEQLAKKFKIDVNYF- 60 Query: 92 DGEVIDRRYEDVTNKKRL 109 D R V N K+L Sbjct: 61 ---YDDCRQYVVNNDKKL 75 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +++++R++ G+SQ EF K G+ TL +YE G T P+ ++ + K +++ Sbjct: 1 MIGNKIRALREENGISQKEFAKEFGIAYGTLQSYEYGLTKPKTDFIEQLAKKFKIDVNYF 60 Query: 173 Y 173 Y Sbjct: 61 Y 61 >gi|149004216|ref|ZP_01829008.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|149012995|ref|ZP_01833884.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|149019646|ref|ZP_01834965.1| transcriptional regulator, putative [Streptococcus pneumoniae SP23-BS72] gi|225856698|ref|YP_002738209.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|303255604|ref|ZP_07341655.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|303260497|ref|ZP_07346465.1| hypothetical protein CGSSp9vBS293_00385 [Streptococcus pneumoniae SP-BS293] gi|303262854|ref|ZP_07348791.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae SP14-BS292] gi|303265324|ref|ZP_07351234.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae BS397] gi|303266531|ref|ZP_07352418.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae BS457] gi|303268350|ref|ZP_07354146.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae BS458] gi|147757811|gb|EDK64823.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|147763148|gb|EDK70089.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|147931021|gb|EDK82001.1| transcriptional regulator, putative [Streptococcus pneumoniae SP23-BS72] gi|225726271|gb|ACO22123.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|301801880|emb|CBW34601.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302597460|gb|EFL64555.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|302636052|gb|EFL66550.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae SP14-BS292] gi|302638409|gb|EFL68876.1| hypothetical protein CGSSpBS293_00385 [Streptococcus pneumoniae SP-BS293] gi|302642071|gb|EFL72422.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae BS458] gi|302643982|gb|EFL74242.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae BS457] gi|302645189|gb|EFL75426.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae BS397] Length = 158 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|118445169|ref|YP_879281.1| MerR family transcriptional regulator [Clostridium novyi NT] gi|118135625|gb|ABK62669.1| Transcriptional regulator, MerR family [Clostridium novyi NT] Length = 147 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 30/86 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I+ RK TQ E+A + + + +E G +++ + + I + Sbjct: 2 NVGENIRKYRKEKGLTQSELAEKTHLATNTIQRYEKGHRQPTMQVLEKIADALGIPVYRL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + + + Sbjct: 62 TFNDEESLKAIEKAENILKNFKFVPN 87 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ RK+KG++Q E + + +T+ YE+G P ++ KI + Sbjct: 1 MNVGENIRKYRKEKGLTQSELAEKTHLATNTIQRYEKGHRQPTMQVLEKIADALGIPVYR 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSK 194 + F DE + K ++ K Sbjct: 61 LTFNDEESLKAIEKAENILKNFK 83 >gi|107022224|ref|YP_620551.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689169|ref|YP_834792.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105892413|gb|ABF75578.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116647258|gb|ABK07899.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 206 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 37/101 (36%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 + + I + + + R++++R T +A + S ++L E S + Sbjct: 2 KESAITAADDTGINERIARRVRELRTVRGYTLDALAARSGVSRSMISLIERASASPTAVV 61 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 L +S ++ G+ D + + + + + A Sbjct: 62 LDKLAAGLGVSLAGLFGGDRDDAPAQPLARRAQQAEWRDPA 102 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 28/80 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+ P K+ L ++ G Sbjct: 20 RRVRELRTVRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAGLFGG 79 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 D P + Q+ + Sbjct: 80 DRDDAPAQPLARRAQQAEWR 99 >gi|320322230|gb|EFW78326.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331879|gb|EFW87817.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 199 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 19 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 66 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLDWIYF 174 RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + + F Sbjct: 22 ERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMSMVEF 78 Query: 175 GDEVIVPKS 183 E VP++ Sbjct: 79 FSEETVPEN 87 >gi|319935803|ref|ZP_08010232.1| hypothetical protein HMPREF9488_01063 [Coprobacillus sp. 29_1] gi|319809238|gb|EFW05687.1| hypothetical protein HMPREF9488_01063 [Coprobacillus sp. 29_1] Length = 121 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D IG +++ +R + ++Q L + S +SN E +T P + +I ++ Sbjct: 9 EIDYTKIGRKIQKLRNMQSLTQAYVAGLADISLSHMSNIETAKTKPSLVTLSRISRILGC 68 Query: 168 HLDWIYFGDEVIV 180 LD + F DE+ + Sbjct: 69 TLDELVFDDEITL 81 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 34/87 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +I+ +R + TQ +A A+ S ++ E S+ + + D Sbjct: 12 YTKIGRKIQKLRNMQSLTQAYVAGLADISLSHMSNIETAKTKPSLVTLSRISRILGCTLD 71 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIG 115 + + I R++ + D + I Sbjct: 72 ELVFDDEITLRFKQLKVLGISDEFEIR 98 >gi|311108201|ref|YP_003981054.1| hypothetical protein AXYL_05033 [Achromobacter xylosoxidans A8] gi|310762890|gb|ADP18339.1| helix-turn-helix family protein 11 [Achromobacter xylosoxidans A8] Length = 302 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 12/92 (13%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 P + +G R++ +R T+K ++ E + E+G+ + SI L Sbjct: 7 AAPSEPRREAFLVALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILVLL 66 Query: 78 YLRNEYEI------------SFDWIYDGEVID 97 + + S DW+ E++ Sbjct: 67 QIARAFNCALAELVGDVTTESPDWLLIRELLS 98 Score = 47.6 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 12/76 (15%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK----- 167 A+G R++ +R +GM++ ++ G+ L+N E G I +I + Sbjct: 20 ALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILVLLQIARAFNCALAEL 79 Query: 168 -------HLDWIYFGD 176 DW+ + Sbjct: 80 VGDVTTESPDWLLIRE 95 >gi|289434544|ref|YP_003464416.1| transcriptional repressor, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170788|emb|CBH27330.1| transcriptional repressor, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 131 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/103 (10%), Positives = 35/103 (33%), Gaps = 1/103 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLDMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 D++ + + ++ + + +R + + Sbjct: 61 DYLLGQQSMPTFAPSELESEKDIAKRMTKISEDLRNEDDLKLD 103 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL +R+ +G S+ E + LG+ ST N+E G P++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLDMVTQIATLYDVSVDYLL 64 >gi|295401783|ref|ZP_06811748.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|312112235|ref|YP_003990551.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|294976150|gb|EFG51763.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|311217336|gb|ADP75940.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 97 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q + +IK RK N TQ+E+A +S + E G+ S + + Sbjct: 21 QLEGTIAAQIKTRRKQLNMTQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 A++K+ RK M+Q E +G+P ST+ E G T P ++ KI Q Sbjct: 28 AQIKTRRKQLNMTQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|196230222|ref|ZP_03129085.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] gi|196225819|gb|EDY20326.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] Length = 207 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 4/106 (3%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++++R A + +A + S ++L E G S + L + + Sbjct: 16 LNQRIAGRVRELRAAQGLSLDTLANRSGVSRSMISLIERGESSPTAVVLEKLASGLGATL 75 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYA----IGARLKSIRKDKGMSQ 129 ++DG +R D ++ G+SQ Sbjct: 76 PSLFDGLSAKASGPTSPVSRREDQPEWRDPASGYIRRNISPVGLSQ 121 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R +G+S G+ S +S E+G + P K+ L ++ G Sbjct: 24 VRELRAAQGLSLDTLANRSGVSRSMISLIERGESSPTAVVLEKLASGLGATLPSLFDG 81 >gi|54027227|ref|YP_121469.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018735|dbj|BAD60105.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 468 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R +Q +A S +N E+ + ++ L + + + D + Sbjct: 6 VGARLRQLRTERGLSQVALAQQLEISASYLNQIEHDVRPLTVPVLLKISEVFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLDP 111 D R + +D Sbjct: 64 FSSQDDTRLIAELQEVVMDQ 83 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 36/84 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +GARL+ +R ++G+SQ+ + L + S L+ E + KI +V Sbjct: 1 MAKTYVGARLRQLRTERGLSQVALAQQLEISASYLNQIEHDVRPLTVPVLLKISEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 + D+ + ++ +Q Sbjct: 61 ATFFSSQDDTRLIAELQEVVMDQE 84 >gi|325475695|gb|EGC78871.1| DNA-binding protein [Treponema denticola F0402] Length = 93 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 39/93 (41%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ +R+ V R++ R+ +Q E+A+ A+ ++ +N E G + S+ L + Sbjct: 1 MSVFLREQQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKIC 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYA 113 + I+ ++ ++ + + Sbjct: 61 HALNINPAVLFSDTEEEKAEAKKQVLDMIQRWM 93 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ R+ G+SQ+E + + ++ E G+ P + KI + ++ Sbjct: 14 NRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALNINPAVLFSD 73 Query: 176 DEVIVPKSIKR 186 E ++ K+ Sbjct: 74 TEEEKAEAKKQ 84 >gi|322834164|ref|YP_004214191.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169365|gb|ADW75064.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 184 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 39/108 (36%), Gaps = 2/108 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + TR++ +RK+ + +++A + ++ ++ E S S L +S + Sbjct: 7 IATRLQALRKSQGLSLEQLASSSGVSKAMISKIERQDSSPSASLLGRLAASLGVSLAQLL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 + ++ + L+ R+ + +L+ + Sbjct: 67 SEDNEQPAPLRPLAQQEVWQDPDIGYLR--RQVTAHEENGGAELVEIT 112 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+++RK +G+S + G+ + +S E+ + P ++ L + D Sbjct: 11 LQALRKSQGLSLEQLASSSGVSKAMISKIERQDSSPSASLLGRLAASLGVSLAQLLSEDN 70 Query: 178 VI 179 Sbjct: 71 EQ 72 >gi|291561272|emb|CBL40071.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] Length = 117 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 29/71 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI +++K + T K + + + ++ G + S L L + +S D+++ Sbjct: 5 ERILELQKQSGLTVKALEAATGISNGSFSKWKKGTYAPSAEAVLRLAKYFHVSTDYLFCL 64 Query: 94 EVIDRRYEDVT 104 +++ Sbjct: 65 SDSPYPKVEIS 75 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 29/72 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R+ ++K G++ G+ N + S +++G P + ++ + D+ Sbjct: 1 MDTLERILELQKQSGLTVKALEAATGISNGSFSKWKKGTYAPSAEAVLRLAKYFHVSTDY 60 Query: 172 IYFGDEVIVPKS 183 ++ + PK Sbjct: 61 LFCLSDSPYPKV 72 >gi|288870099|ref|ZP_06112925.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288868454|gb|EFD00753.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 67 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I+ +RK +Q+E+A +N EN ++ A +L E + + D ++ Sbjct: 9 IRSMRKQQGLSQEELAKKCGVSRQTINAIENNKYDPTLALAFHLAKELQTTVDNLF 64 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++S+RK +G+SQ E K G+ T++ E + P + A + + + +D ++ Sbjct: 5 MENIIRSMRKQQGLSQEELAKKCGVSRQTINAIENNKYDPTLALAFHLAKELQTTVDNLF 64 >gi|237786506|ref|YP_002907211.1| HTH_3 family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759418|gb|ACR18668.1| transcriptional regulator, HTH_3 family [Corynebacterium kroppenstedtii DSM 44385] Length = 498 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 2/87 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTR+K +RK +Q +A S VN EN + + + + I D + Sbjct: 16 VGTRLKQLRKERELSQATLAHALGLSASYVNQIENDSRPLTSSVLRKITHVFGI--DEAF 73 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D R + LD + Sbjct: 74 FSREDDSRLVAEVHDVTLDREVCPTSI 100 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK++ +SQ LG+ S ++ E RKI V + D+ Sbjct: 20 LKQLRKERELSQATLAHALGLSASYVNQIENDSRPLTSSVLRKITHVFGIDEAFFSREDD 79 Query: 178 V 178 Sbjct: 80 S 80 >gi|237748951|ref|ZP_04579431.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes OXCC13] gi|229380313|gb|EEO30404.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes OXCC13] Length = 121 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + K +G I R TQ+++A N AV+ E G ++ + L + Sbjct: 5 KEKAIAKAIGRAIAKKRTEKGLTQEDVAEKLNIGNEAVSRIERGTVIPNVVRLVELAEIF 64 Query: 84 EISFDWIY 91 E D + Sbjct: 65 ECGTDELL 72 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 NK++ AIG + R +KG++Q + + L + N +S E+G IP + ++ Sbjct: 1 MQKNKEKAIAKAIGRAIAKKRTEKGLTQEDVAEKLNIGNEAVSRIERGTVIPNVVRLVEL 60 Query: 162 KQVTKKHLDWIY 173 ++ + D + Sbjct: 61 AEIFECGTDELL 72 >gi|227819239|ref|YP_002823210.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338238|gb|ACP22457.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 149 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ R + +Q E+A V +ENG S + N E+ + + Sbjct: 18 VGQKIRMQRLLLHMSQTELAKALGVTYQQVQKYENGRTRVSASRLQAIANVLEVPLTFFF 77 Query: 92 DGEVID 97 + D Sbjct: 78 ESSASD 83 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ R MSQ E K LG+ + YE GRT + I V + L + + Sbjct: 20 QKIRMQRLLLHMSQTELAKALGVTYQQVQKYENGRTRVSASRLQAIANVLEVPLTFFF 77 >gi|220928331|ref|YP_002505240.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998659|gb|ACL75260.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 179 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK +R N TQ+E+A + ++ E + S SI + + + Sbjct: 2 KIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLMDILESLGTNIKDF 61 Query: 91 YDGEVIDRRYEDVTN 105 ++ V ++ + Sbjct: 62 FNESVNEKVVFKKDD 76 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 4/88 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R G++Q E + +S E+ T P I I + ++ Sbjct: 1 MKIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLMDILESLGTNIKD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +E + K + K + K +D Sbjct: 61 FF--NESVNEKVV--FKKDDVFTKEDRD 84 >gi|220924825|ref|YP_002500127.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949432|gb|ACL59824.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 218 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G I+ +RKA N + E+A + +S ++ E + ++ L ++S + Sbjct: 35 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIE 92 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-F 174 ++ +RK +S E + G+ S +S E+ T P + ++ Q ++ + Sbjct: 38 KTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVLAT 97 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKDK 200 GDE + RA + K K Sbjct: 98 GDEEPFIEKSSRADTPILVSEDGKVK 123 >gi|158321370|ref|YP_001513877.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141569|gb|ABW19881.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 78 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 40/76 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK++R+ ++Q + G L+G+ +++ E + P I A I +V + ++ I+ Sbjct: 1 MKNRLKALRESFELTQEQLGALVGVSRQAINSIETEKFEPSIWLAYDISKVFECSIEDIF 60 Query: 174 FGDEVIVPKSIKRAKG 189 +E ++++G Sbjct: 61 LFEESERKSRAQQSRG 76 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R++ TQ+++ A+N E SI A + +E S + I+ Sbjct: 3 NRLKALRESFELTQEQLGALVGVSRQAINSIETEKFEPSIWLAYDISKVFECSIEDIFLF 62 Query: 94 EVIDRRYEDVTNK 106 E +R+ ++ Sbjct: 63 EESERKSRAQQSR 75 >gi|88604264|ref|YP_504442.1| XRE family transcriptional regulator [Methanospirillum hungatei JF-1] gi|88189726|gb|ABD42723.1| transcriptional regulator, XRE family [Methanospirillum hungatei JF-1] Length = 67 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK R ++ TQ+++A + E G S+ A + + ++ + I+ Sbjct: 3 NKIKVFRAMHDMTQEDLAREVGVTRQTILAIEKGKYDPSLELAFKMARRFHVTIEEIFVF 62 Query: 94 EVIDR 98 E Sbjct: 63 EESSP 67 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K R M+Q + + +G+ T+ E+G+ P ++ A K+ + ++ I+ Sbjct: 1 MKNKIKVFRAMHDMTQEDLAREVGVTRQTILAIEKGKYDPSLELAFKMARRFHVTIEEIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 VFEES 65 >gi|83593946|ref|YP_427698.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576860|gb|ABC23411.1| Transcriptional Regulator, XRE family with Cupin sensor domain [Rhodospirillum rubrum ATCC 11170] Length = 248 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 7/89 (7%) Query: 5 PFLETSLKSLQEYTLIITPEI-------RQYWKDVGTRIKDIRKANNKTQKEMAIGANQL 57 PF + + P VG ++ +R + +A + Sbjct: 34 PFFREAGRPSATIPSFEPPTAADLGRSAEDLMPVVGENLRRLRTGRGLSLDRLAKLSGVS 93 Query: 58 ESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + E G + +I + ++ Sbjct: 94 RAMLGQIELGRSAPTITVLWKIARALDVP 122 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +G L+ +R +G+S KL G+ + L E GR+ P I KI + Sbjct: 65 MPVVGENLRRLRTGRGLSLDRLAKLSGVSRAMLGQIELGRSAPTITVLWKIARALDVP 122 >gi|312868344|ref|ZP_07728544.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096089|gb|EFQ54333.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 64 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R ++ TQ ++A + L E G + ++ L + + + D ++ Sbjct: 6 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLDKTLDQLF 62 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R + M+Q + +G+ T+ E G+ P + I + K LD Sbjct: 1 MAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLDKTLDQ 60 Query: 172 IYFG 175 +++ Sbjct: 61 LFWE 64 >gi|302341551|ref|YP_003806080.1| phage repressor [Desulfarculus baarsii DSM 2075] gi|301638164|gb|ADK83486.1| putative phage repressor [Desulfarculus baarsii DSM 2075] Length = 252 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 10/115 (8%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL-YLRNEY 83 IR ++G R ++IRK +Q+E A ++ + E G S ++ L Sbjct: 7 IRNNRVEIGGRFREIRKQLGLSQQEFASVLGVTQATASRIERGEVSATVEALSGLLCAYP 66 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK----GMSQIEFGK 134 ++ +I G + + IR + Q Sbjct: 67 DLDVGYILCGNTSAIQSPCPDALEVAANICPV-----IRTMNSDLSDVQQENVAD 116 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR-KIKQVTKKHLDWIYFGD 176 + IRK G+SQ EF +LG+ +T S E+G ++ + + +I G+ Sbjct: 19 REIRKQLGLSQQEFASVLGVTQATASRIERGEVSATVEALSGLLCAYPDLDVGYILCGN 77 >gi|262282005|ref|ZP_06059774.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262262459|gb|EEY81156.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 190 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 26/82 (31%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK R TQKE+A + + +E G S + ++ D ++ Sbjct: 18 IKSARLKAGMTQKELAKIIGVTKQTIINYEKGTTDPSWERLEDIAKALKVDVDALFPYNE 77 Query: 96 IDRRYEDVTNKKRLDPYAIGAR 117 DV L+ A Sbjct: 78 FGEMKGDVKWADHLERLANDWH 99 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS R GM+Q E K++G+ T+ NYE+G T P + I + K +D ++ +E Sbjct: 18 IKSARLKAGMTQKELAKIIGVTKQTIINYEKGTTDPSWERLEDIAKALKVDVDALFPYNE 77 >gi|302529249|ref|ZP_07281591.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] gi|302438144|gb|EFL09960.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] Length = 79 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 32/76 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++V RI +R +++++A + E G S S+ AL + +E++ + Sbjct: 3 ENVYNRIAVLRAERGISRRQLADALGVHYQTIGYLERGEYSPSLYLALRIAEFFEVAVEV 62 Query: 90 IYDGEVIDRRYEDVTN 105 ++ R ++ Sbjct: 63 LFSTAPFPRIGDENKP 78 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+ +R ++G+S+ + LG+ T+ E+G P + A +I + + ++ ++ Sbjct: 6 YNRIAVLRAERGISRRQLADALGVHYQTIGYLERGEYSPSLYLALRIAEFFEVAVEVLF 64 >gi|99082865|ref|YP_615019.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99039145|gb|ABF65757.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 188 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 2/103 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + R+K+ R+A + + +A + S V+ E G S +I L Sbjct: 1 MTDTTDDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLT 60 Query: 81 NEYEISFDWIYD-GEVIDRRYE-DVTNKKRLDPYAIGARLKSI 121 ++ F + + GE DR + +D A + + Sbjct: 61 RALQVDFAGLLEAGEAADRIDVLRARDVPVIDSKAAHCTIAIL 103 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ +G+S L G+ S +S E+G + P I + + + + Sbjct: 13 PARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72 Query: 175 GDEVIVPKSIKRAK 188 E + RA+ Sbjct: 73 AGEAADRIDVLRAR 86 >gi|21227029|ref|NP_632951.1| PbsX family transcriptional regulator [Methanosarcina mazei Go1] gi|20905349|gb|AAM30623.1| transcriptional regulator, PBSX family [Methanosarcina mazei Go1] Length = 67 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK R ++ TQ+ +A ++ E G S+ A L + + + I+ Sbjct: 3 NKIKVYRAMHDLTQENLADRVGVTRQTIHAIEKGKYDPSLDLAFKLARLFNANIEDIFLY 62 Query: 94 EVI 96 E Sbjct: 63 EEK 65 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 31/64 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K R ++Q +G+ T+ E+G+ P + A K+ ++ +++ I+ Sbjct: 1 MKNKIKVYRAMHDLTQENLADRVGVTRQTIHAIEKGKYDPSLDLAFKLARLFNANIEDIF 60 Query: 174 FGDE 177 +E Sbjct: 61 LYEE 64 >gi|116628702|ref|YP_813874.1| transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|300362660|ref|ZP_07058836.1| transcriptional regulator [Lactobacillus gasseri JV-V03] gi|116094284|gb|ABJ59436.1| Predicted transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|300353651|gb|EFJ69523.1| transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 70 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q +A + +NL EN + S+ L L +E + + ++ Sbjct: 8 NRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLF 65 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + R+K RK KG+SQ+ K + + T++ E + P + K+ Sbjct: 1 MIERIAMNRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTD 60 Query: 169 LDWIYFG 175 L+ +++ Sbjct: 61 LNTLFWD 67 >gi|310778575|ref|YP_003966908.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309747898|gb|ADO82560.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 190 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 31/85 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + +G +K+IRK N + E + + + E G + ++ + + Sbjct: 1 MKELSEVIGKNLKEIRKKQNLSLDETSRLTGVSKPMLGQIERGQSNPTVSTLWKIATGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F D + N + Sbjct: 61 VPFSEFMKKSTADYEIVSLKNIDPV 85 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG LK IRK + +S E +L G+ L E+G++ P + KI K Sbjct: 7 VIGKNLKEIRKKQNLSLDETSRLTGVSKPMLGQIERGQSNPTVSTLWKIATGLKVPFSEF 66 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + I K + +D K Sbjct: 67 M--KKSTADYEIVSLKNIDPVLECGEDMK 93 >gi|149914411|ref|ZP_01902942.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149811930|gb|EDM71763.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 123 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 33/97 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E G S + + ++ + + Sbjct: 9 VGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIADALDVDVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +G D + K D L +R + Sbjct: 69 EGLETDSGKSEAGEKVPADLLGDKEALDLVRSYYAIP 105 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ R GM+Q + + +G+ + YE G I + + Sbjct: 7 IHVGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIADALDVDVSF 66 Query: 172 IYFGDEVIVPKSIKRAK 188 + G E KS K Sbjct: 67 FFEGLETDSGKSEAGEK 83 >gi|150395536|ref|YP_001326003.1| hypothetical protein Smed_0309 [Sinorhizobium medicae WSM419] gi|150027051|gb|ABR59168.1| protein of unknown function DUF955 [Sinorhizobium medicae WSM419] Length = 470 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ IR TQ MA S +NL E +++ L L + Y I + + Sbjct: 9 GPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYRIDLEEL 66 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + LG+ S L+ E+ + ++ K+ V + L+ + Sbjct: 12 VRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYRIDLEEL 66 >gi|88797514|ref|ZP_01113103.1| hypothetical protein MED297_10191 [Reinekea sp. MED297] gi|88779686|gb|EAR10872.1| hypothetical protein MED297_10191 [Reinekea sp. MED297] Length = 507 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK NN T ++++ S +++ E G + S+ + ++ Sbjct: 14 LGTKIRNLRKQNNLTMEDLSARCIRVDPDSAPSVSYLSMIERGKRTPSLDMLEVIAAVFQ 73 Query: 85 ISFDWIYDGEVIDRRYEDVTNK 106 DW D E V ++ Sbjct: 74 KDADWFLDDEPQAEAIAPVKSE 95 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 9/88 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ P + I V Sbjct: 12 HFLGTKIRNLRKQNNLTMEDLSARCIRVDPDSAPSVSYLSMIERGKRTPSLDMLEVIAAV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQS 192 +K DW D+ ++I K Sbjct: 72 FQKDADWFL--DDEPQAEAIAPVKSETK 97 >gi|323492244|ref|ZP_08097402.1| hypothetical protein VIBR0546_03660 [Vibrio brasiliensis LMG 20546] gi|323313557|gb|EGA66663.1| hypothetical protein VIBR0546_03660 [Vibrio brasiliensis LMG 20546] Length = 507 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 31/185 (16%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCST 71 + ++ + + +GT+I+++RK N+ T ++++ S +++ E G Sbjct: 1 MPVSKSLIRQSHFLGTKIRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVP 60 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKR-------LDPYAIGARLKSIRKD 124 SI + ++ W D E + + + I Sbjct: 61 SIDMLEVIAEVFQKDPAWFLDDEPEQADITPDKGNRGGISGMALEPSFLFSNDILQIAIP 120 Query: 125 KGMSQ-----IEFGKLL-----GMPNSTLSNYEQ-------GRTIPEIKPARKIKQVTKK 167 + +SQ +F LL + + E+ R + I + Sbjct: 121 EMLSQTGITGRQFAHLLIRAHQESNQNHFPDLERAAEEVGLKRLNLSAEDLMDIARSLGL 180 Query: 168 HLDWI 172 + WI Sbjct: 181 TIRWI 185 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ +P I I +V Sbjct: 12 HFLGTKIRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVPSIDMLEVIAEV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K W D+ I KGN+ Sbjct: 72 FQKDPAWFL--DDEPEQADITPDKGNR 96 >gi|255024878|ref|ZP_05296864.1| helix-turn-helix domain protein [Listeria monocytogenes FSL J1-208] Length = 130 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPKLSNRLTLLREKQGWSKAETARRLGLSAPSTYGNWEYGIREPDLEMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D++ + I + ++ Sbjct: 61 DYLLGQQSIPTYAPSELHDEK 81 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P+++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLSAPSTYGNWEYGIREPDLEMVTQIATLYDVSVDYLLG 65 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKK 198 + + K+ K Sbjct: 66 QQSIPTYAPSELHDEKNIGKRMTK 89 >gi|257065271|ref|YP_003144943.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792924|gb|ACV23594.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 272 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V I++ RK TQ+++A AV+ +E G SI L + + + Sbjct: 2 KVSEAIQNARKEAGLTQEQLAAKVYVTRQAVSRWETGESEPSIDMRKLLASVLGVPAVGL 61 Query: 91 YD 92 +D Sbjct: 62 FD 63 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +++ RK+ G++Q + + + +S +E G + P I + + V Sbjct: 1 MKVSEAIQNARKEAGLTQEQLAAKVYVTRQAVSRWETGESEPSIDMRKLLASVLGVP 57 >gi|327438377|dbj|BAK14742.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 67 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++ R+K R ++ +Q E+A + L E G + ++ + + + D Sbjct: 1 MKNI--RLKMARIEHDLSQDELAKKVGVTRQTIGLIELGKYNPTLSVCIAICRTLNRTLD 58 Query: 89 WIYDGEVID 97 ++ E + Sbjct: 59 ELFWDEQSE 67 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK R + +SQ E K +G+ T+ E G+ P + I + + LD + Sbjct: 1 MKNIRLKMARIEHDLSQDELAKKVGVTRQTIGLIELGKYNPTLSVCIAICRTLNRTLDEL 60 Query: 173 YFGDEV 178 ++ ++ Sbjct: 61 FWDEQS 66 >gi|322412332|gb|EFY03240.1| hypothetical protein SDD27957_08155 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 67 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R++++R+ + TQ ++A + +S + ENG + L Y+++ D+I + Sbjct: 4 RLRNLREDKDLTQSQIASYLHCSQSVYSRIENGKQDIPTSFLKKLAIYYKVTTDYILE 61 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+++R+DK ++Q + L S S E G+ +K+ K D+I Sbjct: 1 MYIRLRNLREDKDLTQSQIASYLHCSQSVYSRIENGKQDIPTSFLKKLAIYYKVTTDYIL 60 Query: 174 FGDEV 178 D+ Sbjct: 61 EMDKS 65 >gi|319947513|ref|ZP_08021745.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319746453|gb|EFV98714.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 227 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 2/84 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++KD R TQ ++ + +ENG+ + L + D+ D Sbjct: 7 KKLKDRRLELGLTQAQVYESLEISRKTYSSWENGLAEPHDKNLRRLAKHLSVKEDYFVDK 66 Query: 94 EV--IDRRYEDVTNKKRLDPYAIG 115 ++K++D A Sbjct: 67 SSALFTYPLLTPPHQKKVDLLASQ 90 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK R + G++Q + + L + T S++E G P K R++ + D Sbjct: 2 QMFDAKKLKDRRLELGLTQAQVYESLEISRKTYSSWENGLAEPHDKNLRRLAKHLSVKED 61 Query: 171 WIY 173 + Sbjct: 62 YFV 64 >gi|312197651|ref|YP_004017712.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311228987|gb|ADP81842.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 175 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 32/84 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + VG R++ R+A + + +A A + +++ ENG+ + ++ L E+ Sbjct: 4 EVAAAVGARLRATRQARDLSVGALAARAGVGKGSLSEIENGVRNPTLGTLYALAGALEVP 63 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLD 110 + + LD Sbjct: 64 LATLLADRPGVEVASPGIGARLLD 87 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+GARL++ R+ + +S G+ +LS E G P + + + L + Sbjct: 8 AVGARLRATRQARDLSVGALAARAGVGKGSLSEIENGVRNPTLGTLYALAGALEVPLATL 67 Query: 173 YF---GDEVIVP 181 G EV P Sbjct: 68 LADRPGVEVASP 79 >gi|260889630|ref|ZP_05900893.1| putative prophage LambdaCh01, repressor protein [Leptotrichia hofstadii F0254] gi|260860236|gb|EEX74736.1| putative prophage LambdaCh01, repressor protein [Leptotrichia hofstadii F0254] Length = 219 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGAN------QLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++G R+K++RK N + + N +S ++ +EN + S ++ + Sbjct: 2 NIGKRLKELRKKNALSMDSLVEKLNRKYNLNITKSMISRWENNLSEPSSKFITAYAKFFN 61 Query: 85 ISFDWI 90 I +++ Sbjct: 62 IDLNYL 67 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLG------MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 IG RLK +RK +S + L + S +S +E + P K + Sbjct: 1 MNIGKRLKELRKKNALSMDSLVEKLNRKYNLNITKSMISRWENNLSEPSSKFITAYAKFF 60 Query: 166 KKHLDWIYFGDEVIVP 181 L+++ ++ P Sbjct: 61 NIDLNYLAGITDIKNP 76 >gi|253316015|ref|ZP_04839228.1| hypothetical protein SauraC_07702 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|257426314|ref|ZP_05602723.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428649|ref|ZP_05605046.1| helix-turn-helix containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431575|ref|ZP_05607946.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433971|ref|ZP_05610323.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257436875|ref|ZP_05612918.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876] gi|282915390|ref|ZP_06323166.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282926055|ref|ZP_06333701.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|293509091|ref|ZP_06667875.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293511865|ref|ZP_06670558.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293550575|ref|ZP_06673246.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|257270886|gb|EEV03072.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274520|gb|EEV06026.1| helix-turn-helix containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257277677|gb|EEV08354.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281109|gb|EEV11252.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257283786|gb|EEV13910.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876] gi|270300313|gb|ACZ69119.1| hypothetical protein SAP065B_019 [Staphylococcus aureus] gi|281334218|gb|ADA61302.1| hypothetical protein SAP013A_027 [Staphylococcus aureus] gi|281334580|gb|ADA61664.1| hypothetical protein SAP026A_011 [Staphylococcus aureus] gi|282165943|gb|ADA79963.1| hypothetical protein SAP095A_012 [Staphylococcus aureus] gi|282165989|gb|ADA80009.1| hypothetical protein SAP096A_026 [Staphylococcus aureus] gi|282166399|gb|ADA80415.1| hypothetical protein SAP085C_016 [Staphylococcus aureus] gi|282166455|gb|ADA80471.1| hypothetical protein SAP088A_032 [Staphylococcus aureus] gi|282166595|gb|ADA80611.1| hypothetical protein SAP093C_026 [Staphylococcus aureus] gi|282166914|gb|ADA80930.1| hypothetical protein SAP084B_016 [Staphylococcus aureus] gi|282166965|gb|ADA80981.1| hypothetical protein SAP086A_019 [Staphylococcus aureus] gi|282167021|gb|ADA81037.1| Transcriptional regulator, XRE family [Staphylococcus aureus] gi|282312457|gb|EFB42862.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282320717|gb|EFB51052.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|290918638|gb|EFD95715.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|291094657|gb|EFE24932.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291465307|gb|EFF07840.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] Length = 64 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK+ R+ +Q+E+ +V+ +E+ S+ + + + + I+ D + Sbjct: 2 KLAEDIKEQRELKGWSQEELTNILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHL 61 Query: 91 YDG 93 G Sbjct: 62 IKG 64 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R+ KG SQ E +L + ++S +E + P + + + LD Sbjct: 1 MKLAEDIKEQRELKGWSQEELTNILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDH 60 Query: 172 IYFG 175 + G Sbjct: 61 LIKG 64 >gi|258515819|ref|YP_003192041.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779524|gb|ACV63418.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 364 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A AV+ +E G I + + D + Sbjct: 4 NIGEVITAKRKEKLWTQEQLANAVGVSTPAVSKWETGTTYPDIMLLSPIARALNTTVDKL 63 Query: 91 YDGEVI 96 + Sbjct: 64 LSYQNE 69 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + + RK+K +Q + +G+ +S +E G T P+I I + +D + Sbjct: 7 EVITAKRKEKLWTQEQLANAVGVSTPAVSKWETGTTYPDIMLLSPIARALNTTVDKLLSY 66 Query: 176 DEVIVPKSIKR 186 + + + + Sbjct: 67 QNELSDEEVDK 77 >gi|225388847|ref|ZP_03758571.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme DSM 15981] gi|225045122|gb|EEG55368.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme DSM 15981] Length = 201 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 5/102 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI++ RK T ++A ++ E S+ + S ++ G Sbjct: 6 NRIREERKKKGYTLAQVARETGYSIGYISQLERNQKEPSLAALRKIAACLGCSEVYLIMG 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFG 133 + + V++ D + + R + +I+ Sbjct: 66 QENET---AVSHSPDQDTPYGPGYILRRDQRVPMKIPEIDTA 104 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 R++ RK KG + + + G +S E+ + P + RKI Sbjct: 1 MTMNWNRIREERKKKGYTLAQVARETGYSIGYISQLERNQKEPSLAALRKIAACLGCSEV 60 Query: 171 WIYFGDE 177 ++ G E Sbjct: 61 YLIMGQE 67 >gi|191639304|ref|YP_001988470.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|190713606|emb|CAQ67612.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|327386574|gb|AEA58048.1| Transcriptional regulator [Lactobacillus casei BD-II] Length = 209 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 36/84 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ + ++Q + + L + T+S++E R+ P+I +I LD Sbjct: 1 MQFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ + K Q ++ Sbjct: 61 LLREDQTMTDHYDAIDKHAQRDQR 84 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ TQ ++A + ++ +EN I + + + Y+IS D + Sbjct: 2 QFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQL 61 Query: 91 YDGEVIDRRYED 102 + + D Sbjct: 62 LREDQTMTDHYD 73 >gi|163868974|ref|YP_001610203.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018650|emb|CAK02208.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 130 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 4/105 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R + +QKE+ V +E G S + N E+ + Y Sbjct: 20 IGKRIRHRRISMGLSQKELGSHLGVSFQQVQKYEKGFNRVSAGRLQEIANRLEVPIHFFY 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI----GARLKSIRKDKGMSQIEF 132 N D A +++ R+ Q Sbjct: 80 ADIATKEDIPTKENLSHHDQETYSEKEHALVRNFRELHPKKQKAI 124 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 2/109 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + N +D +IG R++ R G+SQ E G LG+ + YE+G Sbjct: 2 QTKNPHFPIKNPNFID-ISIGKRIRHRRISMGLSQKELGSHLGVSFQQVQKYEKGFNRVS 60 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++I + + ++ D + + +++ +K+ + Sbjct: 61 AGRLQEIANRLEVPI-HFFYADIATKEDIPTKENLSHHDQETYSEKEHA 108 >gi|153955831|ref|YP_001396596.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856197|ref|YP_002473319.1| hypothetical protein CKR_2854 [Clostridium kluyveri NBRC 12016] gi|146348689|gb|EDK35225.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569921|dbj|BAH07905.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 118 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN--QLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K G +I D+R TQ+E + ++ ENG+ S + + Y +S Sbjct: 5 KSFGDKIYDLRMGLELTQEEFIARLRPPFSRTTLSYIENGISMPSAEFIKAICEAYNVSA 64 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPY 112 DW+ ++ D + K+ LD Y Sbjct: 65 DWLL--DINDTIALTIKEKQLLDKY 87 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + +R ++Q EF L +TLS E G ++P + + I + DW+ Sbjct: 11 IYDLRMGLELTQEEFIARLRPPFSRTTLSYIENGISMPSAEFIKAICEAYNVSADWLLDI 70 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 ++ I ++ ++ +K +K+K+ Sbjct: 71 NDTIALTIKEKQLLDKYNKLCEKNKQ 96 >gi|146319181|ref|YP_001198893.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146321385|ref|YP_001201096.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253752226|ref|YP_003025367.1| DNA-binding phage protein [Streptococcus suis SC84] gi|253754052|ref|YP_003027193.1| DNA-binding phage protein [Streptococcus suis P1/7] gi|253755986|ref|YP_003029126.1| DNA-binding phage protein [Streptococcus suis BM407] gi|145689987|gb|ABP90493.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145692191|gb|ABP92696.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251816515|emb|CAZ52151.1| putative DNA-binding phage protein [Streptococcus suis SC84] gi|251818450|emb|CAZ56279.1| putative DNA-binding phage protein [Streptococcus suis BM407] gi|251820298|emb|CAR46798.1| putative DNA-binding phage protein [Streptococcus suis P1/7] gi|292558817|gb|ADE31818.1| prophage Sa05, DNA-binding protein [Streptococcus suis GZ1] gi|319758615|gb|ADV70557.1| transcriptional regulator [Streptococcus suis JS14] Length = 173 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +RK NN TQ+E+A + +ENG S + A L + +S ++ Sbjct: 2 NKLKTLRKENNLTQEELAKKIGVNLRTLQKWENGESSIRTKNAEKLAKHFGVSVGYLLGY 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLK 119 E ++ R+K Sbjct: 62 EDKVKKEFYKQLDLYNLDEFRKFRIK 87 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 36/72 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +LK++RK+ ++Q E K +G+ TL +E G + K A K+ + + ++ Sbjct: 1 MNKLKTLRKENNLTQEELAKKIGVNLRTLQKWENGESSIRTKNAEKLAKHFGVSVGYLLG 60 Query: 175 GDEVIVPKSIKR 186 ++ + + K+ Sbjct: 61 YEDKVKKEFYKQ 72 >gi|126733799|ref|ZP_01749546.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Roseobacter sp. CCS2] gi|126716665|gb|EBA13529.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Roseobacter sp. CCS2] Length = 68 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ R TQ E+A +N ENG+ + S AL L ++ S ++ Sbjct: 9 LRAHRTQAKLTQAELADLVGVSRKTINTIENGVFTPSTTLALTLADQLGCSVHDLF 64 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L++ R ++Q E L+G+ T++ E G P A + + ++ Sbjct: 8 HLRAHRTQAKLTQAELADLVGVSRKTINTIENGVFTPSTTLALTLADQLGCSVHDLF 64 >gi|330508079|ref|YP_004384507.1| hypothetical protein MCON_2169 [Methanosaeta concilii GP-6] gi|328928887|gb|AEB68689.1| conserved domain protein [Methanosaeta concilii GP-6] Length = 74 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 34/72 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ R ++Q E K +G+ T+ E+G+ P + A K+ ++ ++ I+ Sbjct: 1 MKNRVRVYRAINDLTQEELAKKIGVTRQTVLAIEKGKYSPSLDLAFKMAKIFGVKIEEIF 60 Query: 174 FGDEVIVPKSIK 185 ++ ++ Sbjct: 61 IYEDPQEKNDVE 72 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ R N+ TQ+E+A V E G S S+ A + + + + I+ Sbjct: 3 NRVRVYRAINDLTQEELAKKIGVTRQTVLAIEKGKYSPSLDLAFKMAKIFGVKIEEIFIY 62 Query: 94 EVI 96 E Sbjct: 63 EDP 65 >gi|326803106|ref|YP_004320924.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651536|gb|AEA01719.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 115 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 33/74 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G IK+ R+ NN +Q ++A + V+ +EN ++ + L + ++ + + Sbjct: 2 KIGQIIKEQRELNNISQGQLASYLKTTQQTVSNWENNKSYPNVENLILLSSIFDQPMEEL 61 Query: 91 YDGEVIDRRYEDVT 104 + ++ D Sbjct: 62 LNEDIRDISEATGR 75 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K R+ +SQ + L T+SN+E ++ P ++ + + + ++ Sbjct: 1 MKIGQIIKEQRELNNISQGQLASYLKTTQQTVSNWENNKSYPNVENLILLSSIFDQPMEE 60 Query: 172 IYFGD 176 + D Sbjct: 61 LLNED 65 >gi|291548981|emb|CBL25243.1| Predicted transcriptional regulator [Ruminococcus torques L2-14] gi|295110023|emb|CBL23976.1| Predicted transcriptional regulator [Ruminococcus obeum A2-162] Length = 211 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 25 IRQYWKDV---GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + Y K + G I+ IRK Q+E+A +++ E G+ + + + Sbjct: 1 MEHYEKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMD 60 Query: 82 EYEISFDWIYDGE 94 ++ + + GE Sbjct: 61 VLGVTPNELLSGE 73 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++IRK +GM Q E +G+ +LS E+G P KI V + + G Sbjct: 13 ENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNELLSG 72 Query: 176 D 176 + Sbjct: 73 E 73 >gi|227823807|ref|YP_002827780.1| transcriptional regulator, XRE family with cupin sensor [Sinorhizobium fredii NGR234] gi|227342809|gb|ACP27027.1| transcriptional regulator, XRE family with cupin sensor [Sinorhizobium fredii NGR234] Length = 220 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R +N +Q+E+A A S ++L E+ + S+ + + I Sbjct: 42 DIGNRLRHVRLMHNLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILDGIPIGLAEF 101 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E R ++ ++ + I Sbjct: 102 FSFEPERPRKAFYAAEELVEIGKGPISYRQI 132 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R +SQ E K G+ NST+S E + P + ++I L + Sbjct: 45 NRLRHVRLMHNLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILDGIPIGLAEFFSF 104 Query: 176 DEVIVPKSIKRAKG 189 + K+ A+ Sbjct: 105 EPERPRKAFYAAEE 118 >gi|163754238|ref|ZP_02161361.1| transcriptional regulator [Kordia algicida OT-1] gi|161326452|gb|EDP97778.1| transcriptional regulator [Kordia algicida OT-1] Length = 255 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++ IK +R + +Q+ A S V +E G I + L + +++ D Sbjct: 1 MRNIQKNIKHLRSLKSFSQERFAETLGWSRSMVGSYEEGRSEPPIDRLIDLSDHFKLPID 60 Query: 89 WIYDGE 94 + + Sbjct: 61 ILVKND 66 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 33/81 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +K +R K SQ F + LG S + +YE+GR+ P I + K +D Sbjct: 1 MRNIQKNIKHLRSLKSFSQERFAETLGWSRSMVGSYEEGRSEPPIDRLIDLSDHFKLPID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 + D + GNQ Sbjct: 61 ILVKNDLTQAKDTSFMQVGNQ 81 >gi|167621874|ref|YP_001676659.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167351615|gb|ABZ74345.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 140 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ RK +Q+ +A + +E G S + + + Sbjct: 18 VGARVRVRRKVLGMSQEALANALGISFQQIQKYERGTNRVSASKLYDIARTLGAPVSYFF 77 Query: 92 DGEVIDRRYE 101 +G + Sbjct: 78 EGLADPCDPD 87 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GAR++ RK GMSQ LG+ + YE+G I + + + Sbjct: 16 LHVGARVRVRRKVLGMSQEALANALGISFQQIQKYERGTNRVSASKLYDIARTLGAPVSY 75 Query: 172 IYFG 175 + G Sbjct: 76 FFEG 79 >gi|30263992|ref|NP_846369.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Ames] gi|47778251|ref|YP_022674.1| prophage lambdaba02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186831|ref|YP_030083.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|165872207|ref|ZP_02216846.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167633712|ref|ZP_02392036.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|167641029|ref|ZP_02399286.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|170688718|ref|ZP_02879922.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|170705922|ref|ZP_02896385.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|177654321|ref|ZP_02936250.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] gi|254683686|ref|ZP_05147546.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CNEVA-9066] gi|254721522|ref|ZP_05183311.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A1055] gi|254736031|ref|ZP_05193737.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Western North America USA6153] gi|254743922|ref|ZP_05201605.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Kruger B] gi|254754299|ref|ZP_05206334.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Vollum] gi|254758010|ref|ZP_05210037.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Australia 94] gi|30258636|gb|AAP27855.1| prophage LambdaBa02, repressor protein [Bacillus phage lambda Ba03] gi|47551956|gb|AAT35408.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180758|gb|AAT56134.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|164712154|gb|EDR17692.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167511079|gb|EDR86468.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|167531118|gb|EDR93805.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|170129462|gb|EDS98326.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|170667234|gb|EDT17993.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|172080811|gb|EDT65892.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] Length = 114 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 21/69 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K R + TQ E S ++ E + + + + IS D + Sbjct: 4 FGENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVDTLM 63 Query: 92 DGEVIDRRY 100 + Sbjct: 64 GRKFTTSEK 72 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK R + ++Q EFG + + S +SN E P++ +I +D Sbjct: 1 MNTFGENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVD 60 Query: 171 WIYFGDEVIVPKSIKR 186 + K ++ Sbjct: 61 TLMGRKFTTSEKHLED 76 >gi|56964628|ref|YP_176359.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16] gi|56910871|dbj|BAD65398.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16] Length = 209 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 24/67 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + R +Q ++A N + ++ +E G S + + + + + Sbjct: 8 LAENLMKARIRKGYSQTDLAEILNVSSATISQYEKGKRSPDVEKLHTIAKVLDTTIPELI 67 Query: 92 DGEVIDR 98 G+ + Sbjct: 68 MGQSDNE 74 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L R KG SQ + ++L + ++T+S YE+G+ P+++ I +V + + G Sbjct: 10 ENLMKARIRKGYSQTDLAEILNVSSATISQYEKGKRSPDVEKLHTIAKVLDTTIPELIMG 69 >gi|301066917|ref|YP_003788940.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|300439324|gb|ADK19090.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 344 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I++ R A TQ+E+A AV+ +E G+ I L + + Sbjct: 7 IRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNTLLT 63 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ R G++Q E +G+ +S +E+G + P+I + ++ ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNT 60 Query: 172 IYFGDEVIVPKSIK 185 + + P+ + Sbjct: 61 LLTFSVTMDPEESR 74 >gi|288916300|ref|ZP_06410679.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288352279|gb|EFC86477.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 393 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 DVGTR+ +R+ N TQ+E+A + + E G S +R L ++ Sbjct: 3 DVGTRLAQVRRRRNMTQEELAERSGVSADVIRRLEQGRRSGAQLRTLGALARALDVRTSD 62 Query: 90 IYDGEVIDRRYEDVTNKKRLD 110 + + +++ LD Sbjct: 63 LLSQDTELDHFDNGDTATLLD 83 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLDWIYFGD 176 L +R+ + M+Q E + G+ + EQGR +++ + + + D Sbjct: 8 LAQVRRRRNMTQEELAERSGVSADVIRRLEQGRRSGAQLRTLGALARALDVRTSDLLSQD 67 Query: 177 EVI 179 + Sbjct: 68 TEL 70 >gi|229185328|ref|ZP_04312511.1| HTH-type transcriptional regulator ansR [Bacillus cereus BGSC 6E1] gi|228598061|gb|EEK55698.1| HTH-type transcriptional regulator ansR [Bacillus cereus BGSC 6E1] Length = 128 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 6 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 63 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D Sbjct: 1 MRRMLERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVD 60 Query: 171 WIY 173 +I Sbjct: 61 YIL 63 >gi|239629798|ref|ZP_04672829.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527410|gb|EEQ66411.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 344 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I++ R A TQ+E+A AV+ +E G+ I L + + Sbjct: 7 IRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNTLLT 63 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ R G++Q E +G+ +S +E+G + P+I + ++ ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNT 60 Query: 172 IYFGDEVIVPKSIK 185 + + P+ + Sbjct: 61 LLTFSVTMDPEESR 74 >gi|149201279|ref|ZP_01878254.1| transcriptional regulator, XRE family with cupin sensor domain [Roseovarius sp. TM1035] gi|149145612|gb|EDM33638.1| transcriptional regulator, XRE family with cupin sensor domain [Roseovarius sp. TM1035] Length = 209 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R+ + T ++++ G S ++ E ++ + ++S D Sbjct: 14 LGRRIRKRRQLMSMTLQDLSNGCGVSVSYLSQIERDNAVPTLGTLAEIAAALDVSIDHFI 73 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 P A+G R++ R+ M+ + G+ S LS E+ +P + +I +D Sbjct: 11 PLALGRRIRKRRQLMSMTLQDLSNGCGVSVSYLSQIERDNAVPTLGTLAEIAAALDVSID 70 Query: 171 WIY 173 Sbjct: 71 HFI 73 >gi|134096404|ref|YP_001101479.1| hypothetical protein HEAR3251 [Herminiimonas arsenicoxydans] gi|133740307|emb|CAL63358.1| Conserved hypothetical protein; putative cupin domain [Herminiimonas arsenicoxydans] Length = 198 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 30/86 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + +G R++ R T ++A A ES ++ E G + S+ L Sbjct: 15 EKKSPTASLGLRLRHARLVAGLTLLQLAQKAACSESLISKIERGSATPSLAMLHRLAMAL 74 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRL 109 E + + + ++ + Sbjct: 75 ETNISSLMSEDGPATGPILRKGERPV 100 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 28/71 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ R G++ ++ + S +S E+G P + ++ + ++ + D Sbjct: 27 LRHARLVAGLTLLQLAQKAACSESLISKIERGSATPSLAMLHRLAMALETNISSLMSEDG 86 Query: 178 VIVPKSIKRAK 188 +++ + Sbjct: 87 PATGPILRKGE 97 >gi|153004833|ref|YP_001379158.1| XRE family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028406|gb|ABS26174.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. Fw109-5] Length = 112 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R + G R+++ R+ TQ+ +A + + V+L E G + + + Sbjct: 43 RRDELRRFGERVREQRRTRGLTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARALG 102 Query: 85 ISFDWIYDGE 94 I I + Sbjct: 103 IPASSIVADD 112 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 6/110 (5%) Query: 72 SIRYALY-----LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 S AL + + Y +S + + + + +R + G R++ R+ +G Sbjct: 4 SPELALKERSVGVSDRYGVS-QHLRRSPPSMAKTKSQRDPRRDELRRFGERVREQRRTRG 62 Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++Q + L + + +S E+G P I + I D Sbjct: 63 LTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARALGIPASSIVADD 112 >gi|94968567|ref|YP_590615.1| MerR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550617|gb|ABF40541.1| transcriptional regulator, MerR family [Candidatus Koribacter versatilis Ellin345] Length = 292 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 33/80 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R++ +R + + ++A ++ E S S+ L Y+++ + Sbjct: 117 NVGLRLRLVRTSRGLSLAQVAEAVGISVGFLSAIERSAMSASVATLRKLAKFYKLNILDL 176 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 +D + +++LD Sbjct: 177 FDQSGGRQYLVRPAERRQLD 196 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 20/146 (13%) Query: 45 KTQKEMAIGANQLESAVNLFEN-GMCST-------------SIRYALY---LRNEYEISF 87 E+A S + +E G+ + +R L ++ Sbjct: 35 LKIGEVADTVGISASVIRSWEKLGLIAPQRTGSKYRLYSQEDVRLLQRARYLSRVRGMNA 94 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 I + R ++ + +G RL+ +R +G+S + + +G+ LS E Sbjct: 95 PAII---ELMRTKGEIKASRNGSADNVGLRLRLVRTSRGLSLAQVAEAVGISVGFLSAIE 151 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIY 173 + + RK+ + K ++ ++ Sbjct: 152 RSAMSASVATLRKLAKFYKLNILDLF 177 >gi|20091114|ref|NP_617189.1| transcriptional regulator [Methanosarcina acetivorans C2A] gi|19916214|gb|AAM05669.1| transcriptional regulator, Hth-3 family [Methanosarcina acetivorans C2A] Length = 79 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ R+K R ++Q K++G+ T+ E+G+ P +K A +I + LD + Sbjct: 11 SMKTRIKEFRARHDLTQEALAKIVGVRRETVVFLEKGKYNPSLKLAYRIARALDTTLDEL 70 Query: 173 YFGDEVIVP 181 + ++ Sbjct: 71 FIFEDSDFE 79 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK+ R ++ TQ+ +A V E G + S++ A + + + D ++ E Sbjct: 15 RIKEFRARHDLTQEALAKIVGVRRETVVFLEKGKYNPSLKLAYRIARALDTTLDELFIFE 74 Query: 95 VIDRR 99 D Sbjct: 75 DSDFE 79 >gi|29376651|ref|NP_815805.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|307276074|ref|ZP_07557207.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX2134] gi|29344115|gb|AAO81875.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|306507404|gb|EFM76541.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX2134] gi|315575132|gb|EFU87323.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309B] gi|315582559|gb|EFU94750.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309A] Length = 119 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 32 VGTRIKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K +RK+ N TQ++MA ++ +E G + + + +++S D++ Sbjct: 2 FAERLKLLRKSKPNLTQQDMANILGVAKTTYASYEQGKRTPDAELQNKIADYFDVSLDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 G + N R + + Sbjct: 62 -HGRDVINNSNLDKNMNRNNELSPEQ 86 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 113 AIGARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +RK K ++Q + +LG+ +T ++YEQG+ P+ + KI LD+ Sbjct: 1 MFAERLKLLRKSKPNLTQQDMANILGVAKTTYASYEQGKRTPDAELQNKIADYFDVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 ++ D + K N Sbjct: 61 LHGRDVINNSNLDKNMNRNNE 81 >gi|325121964|gb|ADY81487.1| hypothetical protein BDGL_000901 [Acinetobacter calcoaceticus PHEA-2] Length = 197 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + ++++IR A T +A SA++L E G S + L N Sbjct: 1 MEDINIRIAQQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + ++D + + + + + + + IR+ Sbjct: 61 VPLTQLFDSPQNTQSPQPMVRRTQQAEWKDPET-RYIRRQ 99 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ IR +G + + S +S E+G P K+ L ++ Sbjct: 10 QQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLF 67 >gi|323701996|ref|ZP_08113665.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323533082|gb|EGB22952.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 180 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 28/79 (35%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++ +I+ +R N T KE++ S ++ E G S +I + + + Sbjct: 1 MEEICEKIRSLRNQQNLTLKELSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNVPIT 60 Query: 89 WIYDGEVIDRRYEDVTNKK 107 + +K Sbjct: 61 SFFTSYQNQNFLVKKEEQK 79 >gi|317491327|ref|ZP_07949763.1| cupin domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920874|gb|EFV42197.1| cupin domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 185 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSHIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + + V N + L Sbjct: 69 EQEKPDEPQVVINAEDL 85 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSHIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 66 FFAEQEKPDEPQV 78 >gi|304384795|ref|ZP_07367141.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328989|gb|EFL96209.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 123 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI D+R++ + TQ E+A +SA+N ENG S L + ++++ D++ Sbjct: 5 KLSKRIVDLRESMDLTQTELARRLKIDKSAMNKIENGTRKVSSEELNKLSDIFDVTTDYL 64 Query: 91 YDGEVIDR 98 + Sbjct: 65 LGKNGTPK 72 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 27/65 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + R+ +R+ ++Q E + L + S ++ E G + K+ + Sbjct: 1 MEQNKLSKRIVDLRESMDLTQTELARRLKIDKSAMNKIENGTRKVSSEELNKLSDIFDVT 60 Query: 169 LDWIY 173 D++ Sbjct: 61 TDYLL 65 >gi|300704586|ref|YP_003746189.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299072250|emb|CBJ43582.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 113 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R A +K+Q+ +A A + ++ E G+ + S+ + + ++ ++ Sbjct: 24 LGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 KR A +K R Sbjct: 84 ---APLDGVSLAPTGKRRANAATPPEIKRGR 111 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+K R SQ + + +S+ E+G P ++ I L + Sbjct: 23 ALGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPSVETLANICHCLGVTLSEL 82 Query: 173 Y 173 + Sbjct: 83 F 83 >gi|326201176|ref|ZP_08191048.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988744|gb|EGD49568.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 183 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 23/69 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ +R T + + ++A +E SI + +S D++ Sbjct: 2 IGERLAMLRNEKKLTMRAIGKLVGVSDAAWVKYEKNRAEPSIATLCKAAELFNVSLDYLM 61 Query: 92 DGEVIDRRY 100 I Sbjct: 62 GRTNIRDPK 70 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 37/84 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG RL +R +K ++ GKL+G+ ++ YE+ R P I K ++ LD++ Sbjct: 1 MIGERLAMLRNEKKLTMRAIGKLVGVSDAAWVKYEKNRAEPSIATLCKAAELFNVSLDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKS 196 + PK + A K Sbjct: 61 MGRTNIRDPKLVDTANIQNVFLKE 84 >gi|227832086|ref|YP_002833793.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] gi|262184059|ref|ZP_06043480.1| putative transcriptional regulator, MerR family protein [Corynebacterium aurimucosum ATCC 700975] gi|227453102|gb|ACP31855.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] Length = 468 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 38/111 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R+ + +Q +A S VN E+ + ++ L + + + + Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLKITEAFGVDATFFS 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + E + + L+ + + L+ + Sbjct: 66 RDDDSRLLAEIQDVVQDQEICPSPVELQELSELVYNHPTVARTLVDIHRRY 116 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +R+++ +SQ LG+ S ++ E + KI + Sbjct: 1 MSKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLKITEAFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 + D+ + I+ +Q Sbjct: 61 ATFFSRDDDSRLLAEIQDVVQDQE 84 >gi|255616990|ref|XP_002539799.1| conserved hypothetical protein [Ricinus communis] gi|223502237|gb|EEF22585.1| conserved hypothetical protein [Ricinus communis] Length = 76 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K G+ ++++R +Q+ +A A + ++ E G S+R L Sbjct: 1 MTELDKAFGSLLRELRNERALSQEALAADAGLTRNYISQLELGSKCPSLRTVFKLCKVLG 60 Query: 85 I 85 + Sbjct: 61 V 61 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G+ L+ +R ++ +SQ G+ + +S E G P ++ K+ +V + + Sbjct: 7 AFGSLLRELRNERALSQEALAADAGLTRNYISQLELGSKCPSLRTVFKLCKVLGVAPEDV 66 Query: 173 Y 173 Sbjct: 67 V 67 >gi|221214621|ref|ZP_03587591.1| helix-turn-helix domain protein [Burkholderia multivorans CGD1] gi|221165511|gb|EED97987.1| helix-turn-helix domain protein [Burkholderia multivorans CGD1] Length = 163 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 13/167 (7%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G R+K+ R +Q E A + A +E+G S Y L + + Sbjct: 4 KMIGDRLKEERMRIGLSQAEFAALGGLGKQAQLNYESGTRSPDANYLAALAKI-GVDVLY 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + GE + +D + + + Q L + T+S + Sbjct: 63 VITGERATQSKLPPDVADLVDSFLQLNDI-----GRAAVQGAINGYLHIGEMTVSG-QPS 116 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 + IP I A ++ + LD + ++++ K + S+K Sbjct: 117 KRIPRI-AANRMAK-----LDAFVEEEVKAAQANVEQTKRQRVSRKR 157 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG RLK R G+SQ EF L G+ NYE G P+ + ++ Sbjct: 1 MVEKMIGDRLKEERMRIGLSQAEFAALGGLGKQAQLNYESGTRSPDANYLAALAKI-GVD 59 Query: 169 LDWIYFGDEVIVPK 182 + ++ G+ K Sbjct: 60 VLYVITGERATQSK 73 >gi|157362947|ref|YP_001469714.1| XRE family transcriptional regulator [Thermotoga lettingae TMO] gi|157313551|gb|ABV32650.1| transcriptional regulator, XRE family [Thermotoga lettingae TMO] Length = 185 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 37/78 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ +R++ T +E+A + ++ E+G S S+ + + + + Sbjct: 7 NIGEKIRSLRQSKKLTVRELAKLSGVTPGLISQIEHGKVSPSLSTLKAILSALGETIISL 66 Query: 91 YDGEVIDRRYEDVTNKKR 108 + +V D+ + + K+ Sbjct: 67 VEQDVGDQIIKGIVRKEE 84 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF- 174 +++S+R+ K ++ E KL G+ +S E G+ P + + I + + + Sbjct: 10 EKIRSLRQSKKLTVRELAKLSGVTPGLISQIEHGKVSPSLSTLKAILSALGETIISLVEQ 69 Query: 175 --GDEVIVPKSIKRAK 188 GD++I K + Sbjct: 70 DVGDQIIKGIVRKEER 85 >gi|186471163|ref|YP_001862481.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197472|gb|ACC75435.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 189 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 30/85 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I + +G RI+ R+ + +A + + V+ E G S + L + Sbjct: 5 IDNVDQRIGARIRAEREGRGWSLTSLAEKSGVSRAMVHKVERGESSPTASLLAKLAGAFG 64 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +S + ++ ++ L Sbjct: 65 MSMSALLALAELEDGRLLRRAEQPL 89 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR+++ R+ +G S + G+ + + E+G + P K+ + + Sbjct: 14 ARIRAEREGRGWSLTSLAEKSGVSRAMVHKVERGESSPTASLLAKLAGAFGMSMSALLAL 73 Query: 176 DEVIVPKSIKRAK 188 E+ + ++RA+ Sbjct: 74 AELEDGRLLRRAE 86 >gi|91787958|ref|YP_548910.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91697183|gb|ABE44012.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 207 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 31/87 (35%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 ++ + + + + R++D+R A + + +A S ++L E G S + Sbjct: 2 MENNSTMREQKSASLNDRIAQRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPTA 61 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRY 100 L + +++ + Sbjct: 62 VLLEKLATGLNVPLASLFEAPQPTKDP 88 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R + +S G+ S +S E+G + P K+ L ++ Sbjct: 22 QRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPTAVLLEKLATGLNVPLASLF 79 >gi|321272295|gb|ADW80180.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] Length = 306 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG ++K+ R TQK++A A+ +E G I+ + ++ + Sbjct: 12 EVGQKVKNWRLERGYTQKDLAEKVGVKYWAILQYEKGNRKIPIKKLYAIAEALSVNVKGL 71 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 GE + +++ L+ K + + + Sbjct: 72 VCGETLPNEKRYFEDEEILNLVKGYKD-KELSEVFYL 107 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG RIK+ R TQK++A + +E G + S+ + IS + Sbjct: 162 KVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSISIIDL 221 Query: 91 YD 92 Sbjct: 222 LP 223 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 PY +G R+K R +G +Q + +G+ N + YEQGR+ ++ +I +V + Sbjct: 160 PYKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSISII 219 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + + K +K + KK Sbjct: 220 DLLPESDEDSEAEEKLSKLIEEYKK 244 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 41/90 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G ++K+ R ++G +Q + + +G+ + YE+G IK I + ++ Sbjct: 11 YEVGQKVKNWRLERGYTQKDLAEKVGVKYWAILQYEKGNRKIPIKKLYAIAEALSVNVKG 70 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G+ + K + + K KDK+ Sbjct: 71 LVCGETLPNEKRYFEDEEILNLVKGYKDKE 100 >gi|301386540|ref|ZP_07234958.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato Max13] gi|330879318|gb|EGH13467.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330941035|gb|EGH43955.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 127 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK+ +Q ++A V+ +E G I + + + ++ + Sbjct: 18 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELL 77 Query: 92 DG 93 G Sbjct: 78 PG 79 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 42/84 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K++RK +SQ + +++G +S YE+G T+P I+ +I V + G Sbjct: 20 AKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELLPG 79 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + ++ + + + + ++ D Sbjct: 80 GQDVLRTRLLSLRQEITERIAEVD 103 >gi|299065294|emb|CBJ36462.1| putative transcription regulator protein [Ralstonia solanacearum CMR15] Length = 109 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R A +K+Q+ +A A + ++ E G+ + SI + ++ ++ Sbjct: 20 LGERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIETLANICYALNVTLAELF 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 R A +K R Sbjct: 80 ---GPMDGISLKPTGTRRANAATPPEIKRNR 107 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+K R SQ + + +S+ E+G P I+ I L + Sbjct: 19 ALGERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIETLANICYALNVTLAEL 78 Query: 173 YFGDEVIVPKSIKRAKGN 190 + + I K + N Sbjct: 79 FGPMDGISLKPTGTRRAN 96 >gi|295092258|emb|CBK78365.1| Predicted transcriptional regulators [Clostridium cf. saccharolyticum K10] Length = 278 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 ++ R++++ K + TQ ++A ESA++ F +G S + L + +E+S D+ Sbjct: 9 NIRQRMQELMKEHKITQAQLATRIGSTESAISRFVSGKTDKISTEHLLRIAKVFEVSTDF 68 Query: 90 IY 91 + Sbjct: 69 LL 70 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 I R++ + K+ ++Q + +G S +S + G+T + +I +V + D++ Sbjct: 10 IRQRMQELMKEHKITQAQLATRIGSTESAISRFVSGKTDKISTEHLLRIAKVFEVSTDFL 69 Query: 173 Y 173 Sbjct: 70 L 70 >gi|257063413|ref|YP_003143085.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791066|gb|ACV21736.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 106 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNE 82 +I + VG + R+ N TQ+++A + S ++ ENG S++ L L + Sbjct: 20 KIDERLLSVGRAVAKARETNGLTQEQLAHMIDMSDHSFISKIENGKRIPSMQRLLTLADA 79 Query: 83 YEISFDWIY 91 ++ + Sbjct: 80 LDVEISYFV 88 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + R+ G++Q + ++ M +S +S E G+ IP ++ + + + Sbjct: 32 VAKARETNGLTQEQLAHMIDMSDHSFISKIENGKRIPSMQRLLTLADALDVEISYFVMD 90 >gi|251778140|ref|ZP_04821060.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082455|gb|EES48345.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 113 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +R + TQ+E +S V+ +E+G + +Y +S DW+ Sbjct: 6 LGNRIKTLRLESKLTQEEFGKPYALKKSTVSQYESGSSRPDDELKKRIALDYNVSLDWLM 65 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+K++R + ++Q EFGK + ST+S YE G + P+ + ++I Sbjct: 1 METNILGNRIKTLRLESKLTQEEFGKPYALKKSTVSQYESGSSRPDDELKKRIALDYNVS 60 Query: 169 LDWIY 173 LDW+ Sbjct: 61 LDWLM 65 >gi|218900177|ref|YP_002448588.1| DNA-binding protein [Bacillus cereus G9842] gi|218541881|gb|ACK94275.1| DNA-binding protein [Bacillus cereus G9842] Length = 73 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R++++R + +Q ++ ++L E G + SI +L + + ++ + I+ Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVAVEEIFT 63 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +R +SQ + GK +G T+S E+G P I + KI Q+ ++ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVAVEE 60 Query: 172 IYF---GDEVIVP 181 I+ G+E Sbjct: 61 IFTLVEGEEDDEE 73 >gi|108761818|ref|YP_632650.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108465698|gb|ABF90883.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 100 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 31/76 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +GT+++ R +Q ++A + ++ E G S+ + L +S Sbjct: 21 KLSQRIGTQVRAARHRVGLSQAQVAEAIHVPTLVLSRLERGRLLPSLPTLVDLCGVLRVS 80 Query: 87 FDWIYDGEVIDRRYED 102 D + GE + + Sbjct: 81 VDLLLSGEGLAFPAPE 96 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++++ R G+SQ + + + +P LS E+GR +P + + V + +D + G+ Sbjct: 29 QVRAARHRVGLSQAQVAEAIHVPTLVLSRLERGRLLPSLPTLVDLCGVLRVSVDLLLSGE 88 Query: 177 EVIVP 181 + P Sbjct: 89 GLAFP 93 >gi|146291531|ref|YP_001181955.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145563221|gb|ABP74156.1| transcriptional regulator, XRE family [Shewanella putrefaciens CN-32] Length = 188 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + + A ++ + E G S +I + + + IS + Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTP 71 Query: 96 IDR 98 + Sbjct: 72 QSQ 74 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK++R KG S + + G+ + + E+G + P I KI L Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 >gi|310827340|ref|YP_003959697.1| hypothetical protein ELI_1748 [Eubacterium limosum KIST612] gi|308739074|gb|ADO36734.1| hypothetical protein ELI_1748 [Eubacterium limosum KIST612] Length = 71 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R + Q E+ A ++L E G S S+ AL + + S + I+ Sbjct: 5 NRLKEFRARDKINQSELGKLAGVSRQTISLIERGDYSPSVTLALKIARIFNTSVEDIFTY 64 Query: 94 EVIDRRY 100 + Sbjct: 65 SDEEDSE 71 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK R ++Q E GKL G+ T+S E+G P + A KI ++ ++ Sbjct: 1 MPLKNRLKEFRARDKINQSELGKLAGVSRQTISLIERGDYSPSVTLALKIARIFNTSVED 60 Query: 172 IYFGDEVIVPK 182 I+ + + Sbjct: 61 IFTYSDEEDSE 71 >gi|307709978|ref|ZP_07646425.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619349|gb|EFN98478.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 114 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG RIK++R ++N TQ ++A + +S + E G + + L + + +++ Sbjct: 8 DVGKRIKELRISSNLTQDKIAEYLSLNQSMIAKMEKGERNITSDVIEKLSALFCCTVEYL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 GE + + LK + K + +F Sbjct: 68 LFGEQAE----QQCVISFRKNKIVDQDLKVLAKINKIVLNQF 105 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ +G R+K +R ++Q + + L + S ++ E+G K+ + Sbjct: 1 MNMINVCDVGKRIKELRISSNLTQDKIAEYLSLNQSMIAKMEKGERNITSDVIEKLSALF 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKG 189 ++++ FG++ I K Sbjct: 61 CCTVEYLLFGEQAEQQCVISFRKN 84 >gi|251788780|ref|YP_003003501.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537401|gb|ACT06022.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 72 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 27/70 (38%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 + G R+K +R +Q+ A + ++ E G+ + ++ + + Sbjct: 2 KNTKDITARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADG 61 Query: 83 YEISFDWIYD 92 EI ++D Sbjct: 62 LEIQLQSLFD 71 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+K++R G+SQ F G+ + +S E+G P ++ I + L ++ Sbjct: 11 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADGLEIQLQSLF 70 >gi|225389774|ref|ZP_03759498.1| hypothetical protein CLOSTASPAR_03522 [Clostridium asparagiforme DSM 15981] gi|225044175|gb|EEG54421.1| hypothetical protein CLOSTASPAR_03522 [Clostridium asparagiforme DSM 15981] Length = 111 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K++G R+ D RK TQ+ +A A+ ++ E G + L + +IS Sbjct: 3 ELLKEMGQRMLDRRKQLRLTQETLAKMAHVTPQTISTAELGTKAMRPETILNVCEALDIS 62 Query: 87 FDWIYDGEVIDRR 99 D++ G VI+ Sbjct: 63 TDYLLRGRVIEDD 75 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RK ++Q K+ + T+S E G + + + D++ G Sbjct: 16 RKQLRLTQETLAKMAHVTPQTISTAELGTKAMRPETILNVCEALDISTDYLLRG 69 >gi|310815924|ref|YP_003963888.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308754659|gb|ADO42588.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 183 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R A +Q+ +A S ++L E+G + S+ + + I Sbjct: 5 DIGGRLRALRMARGLSQRVLAKRVGVPNSTISLIESGRANPSVGSLKRILDGLPIGMAEF 64 Query: 91 Y 91 + Sbjct: 65 F 65 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG RL+++R +G+SQ K +G+PNST+S E GR P + ++I Sbjct: 1 MDQLDIGGRLRALRMARGLSQRVLAKRVGVPNSTISLIESGRANPSVGSLKRILDGLPIG 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + + D + A+ + + K Sbjct: 61 MAEFFAFDPEAQRQVFFAAEELREIGRGK 89 >gi|254518453|ref|ZP_05130509.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226912202|gb|EEH97403.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 115 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 34/80 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G R++ +R + TQ+++A ++ ++ +E L + +S D Sbjct: 1 MQSFGERLRSLRLEKDMTQEDVASYFGLHKTRISQYELNKRQADDDMKKKLAEFFGVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 ++ I +++ NKK Sbjct: 61 YLMGNTDIRESADEILNKKE 80 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + G RL+S+R +K M+Q + G+ + +S YE + + +K+ + LD Sbjct: 1 MQSFGERLRSLRLEKDMTQEDVASYFGLHKTRISQYELNKRQADDDMKKKLAEFFGVSLD 60 Query: 171 WIYFGDEVIV 180 ++ ++ Sbjct: 61 YLMGNTDIRE 70 >gi|226311800|ref|YP_002771694.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226094748|dbj|BAH43190.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 183 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 2/105 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I+ +R T K+++ + S ++ E G S +I + + + ++ Sbjct: 6 KKIRALRIQQELTLKDLSEKSGFSVSFLSQVERGNSSLAITSLQKIAECLGVPITYFFEV 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + + + +K L G+ +K IR LL + Sbjct: 66 DKDVTYHTPIAKRKTLQIE--GSPVKYIRIGGNFPDRALEPLLNV 108 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 31/70 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +++++R + ++ + + G S LS E+G + I +KI + + Sbjct: 1 MEHVYKKIRALRIQQELTLKDLSEKSGFSVSFLSQVERGNSSLAITSLQKIAECLGVPIT 60 Query: 171 WIYFGDEVIV 180 + + D+ + Sbjct: 61 YFFEVDKDVT 70 >gi|261366423|ref|ZP_05979306.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571685|gb|EFB77220.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 200 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RIK++R N TQ ++A + V +E+G + N ++ Sbjct: 5 NEQIGQRIKEVRTEKNITQTQLAKFLGKSLRTVQSYESGESRIFFDTVCSIANFLGVTPS 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 ++ E + +++ + K + D + + Sbjct: 65 YLLGFEEPQLQLNSLSDVIAVLYELNKK--KELHFDVDIKHEQ 105 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 L IG R+K +R +K ++Q + K LG T+ +YE G + I Sbjct: 1 MNLTNEQIGQRIKEVRTEKNITQTQLAKFLGKSLRTVQSYESGESRIFFDTVCSIANFLG 60 Query: 167 KHLDWIYFGDEVIV 180 ++ +E + Sbjct: 61 VTPSYLLGFEEPQL 74 >gi|168182462|ref|ZP_02617126.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|237794872|ref|YP_002862424.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182674430|gb|EDT86391.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|229260963|gb|ACQ51996.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 370 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 34/90 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ+++A +AV+ +E+G I + + ++ D + Sbjct: 6 IGKVIYRLRKEKAITQEQLANFIGVSTAAVSKWESGTSYPDITLLSVIATFFNVTIDTLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ E + + + Sbjct: 66 NFKIELSDEEVMDIFNECEKLFSNGEIHKA 95 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + +RK+K ++Q + +G+ + +S +E G + P+I I Sbjct: 1 MEKLLIGKVIYRLRKEKAITQEQLANFIGVSTAAVSKWESGTSYPDITLLSVIATFFNVT 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + + Sbjct: 61 IDTLLNFKIELSDEEV 76 >gi|113120173|gb|ABI30234.1| hypothetical protein [Streptococcus macedonicus] Length = 74 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ ++ TQ+ +A + + E G + + + L Y +S D++ Sbjct: 3 QRIRDLREDHDFTQRFVANLLSFSHTNYAKIERGEVALTADVLVQLSKLYNVSTDYLLGL 62 Query: 94 EVIDRR 99 R Sbjct: 63 TDYPDR 68 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D +Q LL ++ + E+G ++ ++ D++ Sbjct: 1 MYQRIRDLREDHDFTQRFVANLLSFSHTNYAKIERGEVALTADVLVQLSKLYNVSTDYLL 60 >gi|6458757|gb|AAF10602.1|AE001954_6 epoxidase, putative [Deinococcus radiodurans R1] Length = 161 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ IR+ T +++ G+ +S ++ E + + S+ + + + I ++ Sbjct: 17 IGARLRAIRQQKRLTLEQVVQGSGLDKSYLSRLERDLTTPSVATLVKVCDALGIRPGELF 76 Query: 92 D 92 D Sbjct: 77 D 77 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IGARL++IR+ K ++ + + G+ S LS E+ T P + K+ + Sbjct: 16 HIGARLRAIRQQKRLTLEQVVQGSGLDKSYLSRLERDLTTPSVATLVKVCDALGIRPGEL 75 Query: 173 Y 173 + Sbjct: 76 F 76 >gi|15807634|ref|NP_294753.1| transcription regulator [Deinococcus radiodurans R1] Length = 190 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ IR+ T +++ G+ +S ++ E + + S+ + + + I ++ Sbjct: 17 IGARLRAIRQQKRLTLEQVVQGSGLDKSYLSRLERDLTTPSVATLVKVCDALGIRPGELF 76 Query: 92 D 92 D Sbjct: 77 D 77 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IGARL++IR+ K ++ + + G+ S LS E+ T P + K+ + Sbjct: 16 HIGARLRAIRQQKRLTLEQVVQGSGLDKSYLSRLERDLTTPSVATLVKVCDALGIRPGEL 75 Query: 173 Y 173 + Sbjct: 76 F 76 >gi|332798059|ref|YP_004459558.1| Cupin 2 barrel domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695794|gb|AEE90251.1| Cupin 2 conserved barrel domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KD+G +I+++R T KE+ + S ++ E G + SI + + E Sbjct: 6 RKDIGNKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTSAVSITALEKIAHALETELA 65 Query: 89 WIYD 92 + + Sbjct: 66 YFFT 69 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K + IG +++ +R +KG++ E GK + S LS E+G + I KI Sbjct: 1 MKTIKRKDIGNKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTSAVSITALEKIAHAL 60 Query: 166 KKHLDWIYF 174 + L + + Sbjct: 61 ETELAYFFT 69 >gi|315648648|ref|ZP_07901744.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275850|gb|EFU39201.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 189 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 31/86 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K VG ++ IRK+ + +A ++ + E G + +I + + Sbjct: 1 MEPIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 ISF + + + + + Sbjct: 61 ISFTTLIEETETEVTVVSPDDLEPFH 86 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G L++IRK +G+S +L G+ + L E+G + P I +I Sbjct: 5 HKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGISFT 64 Query: 171 WIY 173 + Sbjct: 65 TLI 67 >gi|183220520|ref|YP_001838516.1| putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910629|ref|YP_001962184.1| transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775305|gb|ABZ93606.1| Transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778942|gb|ABZ97240.1| Putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 207 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 25/76 (32%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K IR + ++A + ++ E G +I + N + F + Sbjct: 29 ENLKLIRHTKGFSLDKLANRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSELLKE 88 Query: 94 EVIDRRYEDVTNKKRL 109 + D + ++ Sbjct: 89 KNQDGIHILKAENSKV 104 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + LK IR KG S + G+ + LS EQG+++P I KI + Sbjct: 26 VVKENLKLIRHTKGFSLDKLANRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSEL 85 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ I +A+ ++ + K Sbjct: 86 LK-EKNQDGIHILKAENSKVLYSNSK 110 >gi|167566021|ref|ZP_02358937.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis EO147] gi|167573100|ref|ZP_02365974.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis C6786] Length = 95 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G I+++R+A +Q+++A A S V E G SI L + + Sbjct: 6 QRFGAAIRELREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIAR 65 Query: 90 IYDGEVIDRRYEDV 103 + Sbjct: 66 LLPPASDPSEPPPP 79 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 GA ++ +R+ + SQ + + G+ S + E+G I I K+ + + + Sbjct: 8 FGAAIRELREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 >gi|163844095|ref|YP_001628499.1| XRE family transcriptional regulator [Brucella suis ATCC 23445] gi|163674818|gb|ABY38929.1| transcriptional regulator, XRE family [Brucella suis ATCC 23445] Length = 104 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G R++++R+ TQKEMA + ++ E+G + + + I +D Sbjct: 4 FGKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE 62 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHL 169 G RL+ +R+++G++Q E + L + + LS E GR P ++I Sbjct: 1 MTPFGKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIW 60 Query: 170 DW 171 D Sbjct: 61 DE 62 >gi|126738636|ref|ZP_01754341.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6] gi|126720435|gb|EBA17141.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6] Length = 188 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 2/103 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + + R+K+ R+A + + +A + S V+ E G S +I L Sbjct: 1 MTEKTDDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLT 60 Query: 81 NEYEISFDWIYD--GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ F + + G + +++ G R++ + Sbjct: 61 RALQVDFAGLLEDGGMKDRIEVLRAGDVPKIENMGQGCRIRIL 103 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ +G+S L G+ S +S E+G + P I + + + + Sbjct: 13 PARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL- 71 Query: 175 GDEVIVPKSIKRAKGNQSSK 194 ++ + I+ + K Sbjct: 72 -EDGGMKDRIEVLRAGDVPK 90 >gi|91787335|ref|YP_548287.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91696560|gb|ABE43389.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 227 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ RKA +++A+G S ++ E G+ S S+R L NE ++ + + Sbjct: 42 LGEQVRHRRKALGLPLQQVALGCGISVSLLSQIERGLRSISLRTLAALSNELQLPLETLI 101 Query: 92 DGEVIDRRY 100 D+ Sbjct: 102 RNTQHDQNE 110 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 30/84 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ RK G+ + G+ S LS E+G ++ + + L+ + Sbjct: 44 EQVRHRRKALGLPLQQVALGCGISVSLLSQIERGLRSISLRTLAALSNELQLPLETLIRN 103 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 + + ++ K + D Sbjct: 104 TQHDQNEGASERSVVRAGKHQRID 127 >gi|89096186|ref|ZP_01169079.1| DNA-binding protein [Bacillus sp. NRRL B-14911] gi|89089040|gb|EAR68148.1| DNA-binding protein [Bacillus sp. NRRL B-14911] Length = 67 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++++R TQ+++A + L E G + SI AL + + + + + I+ E Sbjct: 6 VREMRARFRYTQQDLADKIGVSRQTIGLIEKGDYAPSITLALKISSVFGVPVEQIFHLEG 65 Query: 96 ID 97 + Sbjct: 66 EE 67 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + ++ +R +Q + +G+ T+ E+G P I A KI V ++ I Sbjct: 1 MLKNSVREMRARFRYTQQDLADKIGVSRQTIGLIEKGDYAPSITLALKISSVFGVPVEQI 60 Query: 173 YF--GDE 177 + G+E Sbjct: 61 FHLEGEE 67 >gi|85710922|ref|ZP_01041983.1| repressor protein, putative [Idiomarina baltica OS145] gi|85695326|gb|EAQ33263.1| repressor protein, putative [Idiomarina baltica OS145] Length = 72 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 111 PYAIGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 I ++++R+ G M+Q E G + + T++ EQ R P ++ A I +V + L Sbjct: 1 MLPIDNCVRALREQHGGMTQAELGDKVNLTRQTIAAIEQRRYSPSLETAFLIARVFGQRL 60 Query: 170 DWIYFGDEV 178 + +++ DE Sbjct: 61 EDVFWFDES 69 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 36 IKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ +R+ + TQ E+ N + E S S+ A + + Sbjct: 8 VRALREQHGGMTQAELGDKVNLTRQTIAAIEQRRYSPSLETAFLIARVFG 57 >gi|307701893|ref|ZP_07638902.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261] gi|307616708|gb|EFN95896.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261] Length = 158 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQPEFAQIIGISRNSLSRYENGTSPVSTELIDIICQKFNVS 56 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQPEFAQIIGISRNSLSRYENGTSPVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|306835386|ref|ZP_07468407.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|304568752|gb|EFM44296.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length = 437 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 2/78 (2%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI +RK TQ MA S +N EN ++ + L + + + Sbjct: 7 GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVDPSYF-- 64 Query: 93 GEVIDRRYEDVTNKKRLD 110 E D D Sbjct: 65 AEDRDIHTITELRHIFPD 82 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + GAR+ ++RK +G++Q+ K LG+ S L+ E + + ++ Q Sbjct: 1 MTKHYAGARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVD 60 Query: 169 LDWI 172 + Sbjct: 61 PSYF 64 >gi|297626284|ref|YP_003688047.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922049|emb|CBL56613.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 511 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G I+D RK TQ ++A + +SA++ E+G + S+ + E Sbjct: 10 IGRLIRDARKQRGMTQNQLAEELSTSQSAIHRIESGHQNLSLETINRIAGALESPL 65 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ RK +GM+Q + + L S + E G ++ +I + L Sbjct: 14 IRDARKQRGMTQNQLAEELSTSQSAIHRIESGHQNLSLETINRIAGALESPL 65 >gi|296269730|ref|YP_003652362.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092517|gb|ADG88469.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 409 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST--SIRYALYLR 80 PE ++ +G I+ R+ K+ +E+A + +S ++ ENG+ I A + Sbjct: 9 PEASTDYRRIGENIRRARRYRGKSLEELAGLIGRSKSWLSRVENGLIPLEKRIDIA-RIA 67 Query: 81 NEYEISFDWIY 91 + ++S D + Sbjct: 68 DALQVSTDDLL 78 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT--IPEIKPARKIKQVTKK 167 D IG ++ R+ +G S E L+G S LS E G I A +I + Sbjct: 14 DYRRIGENIRRARRYRGKSLEELAGLIGRSKSWLSRVENGLIPLEKRIDIA-RIADALQV 72 Query: 168 HLDWIYFGDEVIVPKS 183 D + +P+ Sbjct: 73 STDDLLGEATTAIPRV 88 >gi|326204877|ref|ZP_08194730.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984926|gb|EGD45769.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 108 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K++G RI+D R++ T++ A + V E G S+ + + +S D Sbjct: 3 YKEIGKRIRDERESIGLTRERFAELLELSINFVGQIERGEKKMSLETITNISDCLHVSLD 62 Query: 89 WIYDGEVIDRRYEDV 103 ++ G + Sbjct: 63 YLIKGTPDSKINTTK 77 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG R++ R+ G+++ F +LL + + + E+G ++ I Sbjct: 1 MNYKEIGKRIRDERESIGLTRERFAELLELSINFVGQIERGEKKMSLETITNISDCLHVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 LD++ G I K + K K++ S Sbjct: 61 LDYLIKG---TPDSKINTTKLQKLISKCSKEEIS 91 >gi|229191205|ref|ZP_04318193.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC 10876] gi|228592220|gb|EEK50051.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC 10876] Length = 125 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ +RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|297587137|ref|ZP_06945782.1| XRE family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297575118|gb|EFH93837.1| XRE family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 134 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI-RYALYLRNEYEISFDWI 90 G ++K +R+ TQ E+A ++ +E + + + +++ Sbjct: 3 FGAKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDINFL 62 Query: 91 YDGEVI 96 E Sbjct: 63 LTVEDN 68 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI-KPARKIKQVTKKHLD 170 + GA+LK +R+D+G++Q E LG+ T+SNYE T P +KI + ++ Sbjct: 1 MSFGAKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDIN 60 Query: 171 WIYFGDEVIVPKSIKR 186 ++ ++ V S K+ Sbjct: 61 FLLTVEDNFVLDSAKK 76 >gi|227502798|ref|ZP_03932847.1| transcriptional regulatory protein [Corynebacterium accolens ATCC 49725] gi|227076528|gb|EEI14491.1| transcriptional regulatory protein [Corynebacterium accolens ATCC 49725] Length = 437 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 2/78 (2%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI +RK TQ MA S +N EN ++ + L + + + Sbjct: 7 GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVDPSYF-- 64 Query: 93 GEVIDRRYEDVTNKKRLD 110 E D D Sbjct: 65 AEDRDIHTITELRHIFPD 82 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + GAR+ ++RK +G++Q+ K LG+ S L+ E + + ++ Q Sbjct: 1 MTKHYAGARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVD 60 Query: 169 LDWI 172 + Sbjct: 61 PSYF 64 >gi|182677050|ref|YP_001831196.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182632933|gb|ACB93707.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 488 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K +R+ TQ MA N S +NL E +++ + L + Y + Sbjct: 21 GPRLKRLRRERQITQARMAEELNVSPSYLNLMERNQRPITVQVLIRLTDVYGVDPRDFLS 80 Query: 93 GEVIDRRYEDVT 104 E E Sbjct: 81 VEAEQSLGEMDQ 92 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK +R+++ ++Q + L + S L+ E+ + ++ ++ V + Sbjct: 24 LKRLRRERQITQARMAEELNVSPSYLNLMERNQRPITVQVLIRLTDVYGVDPRDFLSVE 82 >gi|169349492|ref|ZP_02866430.1| hypothetical protein CLOSPI_00210 [Clostridium spiroforme DSM 1552] gi|169293567|gb|EDS75700.1| hypothetical protein CLOSPI_00210 [Clostridium spiroforme DSM 1552] Length = 77 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 34/73 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ + TQK++A N + + + +E G + + + ++ + D++ + Sbjct: 5 KRIRDLREDKDLTQKDLANYLNVSQKSYSRYERGERTIAPEILSKIATFHDTTVDYLLNR 64 Query: 94 EVIDRRYEDVTNK 106 Y +K Sbjct: 65 TDDKTNYAKKKDK 77 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R++ +R+DK ++Q + L + + S YE+G + KI +D+ Sbjct: 1 MVIYKRIRDLREDKDLTQKDLANYLNVSQKSYSRYERGERTIAPEILSKIATFHDTTVDY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + K+ K Sbjct: 61 LLNRTDDKTNYAKKKDK 77 >gi|187927014|ref|YP_001893359.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J] gi|241665343|ref|YP_002983702.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|187728768|gb|ACD29932.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J] gi|240867370|gb|ACS65030.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 198 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +++ +R+A + E++ A +S ++ E + + ++ L +S Sbjct: 15 PAVGAKLQALRQARKLSLDELSRHAGVSKSMLSQVERNLANPTVAVLWRLATALGVSLAD 74 Query: 90 IYDGEV 95 E Sbjct: 75 FLSPES 80 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+GA+L+++R+ + +S E + G+ S LS E+ P + ++ L Sbjct: 16 AVGAKLQALRQARKLSLDELSRHAGVSKSMLSQVERNLANPTVAVLWRLATALGVSLADF 75 Query: 173 YFGD 176 + Sbjct: 76 LSPE 79 >gi|71908183|ref|YP_285770.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71847804|gb|AAZ47300.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 120 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 6/103 (5%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G + + RK TQ+ +A V+ E G S+ L S Sbjct: 14 KHLGGNLCERRKQLGWTQEIVAERVGVDVETVSRIERGAHLPSLPTLDRLAVALRCSAGD 73 Query: 90 IYDGEVIDRRYED------VTNKKRLDPYAIGARLKSIRKDKG 126 + E E ++ D + + +++ + G Sbjct: 74 LLSKEGPAEASEAATFSAWISELGPDDRAFVMSVVRNCCEHLG 116 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L RK G +Q + +G+ T+S E+G +P + ++ + + + Sbjct: 19 NLCERRKQLGWTQEIVAERVGVDVETVSRIERGAHLPSLPTLDRLAVALRCSAGDLLSKE 78 >gi|89893339|ref|YP_516826.1| hypothetical protein DSY0593 [Desulfitobacterium hafniense Y51] gi|219666611|ref|YP_002457046.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332787|dbj|BAE82382.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536871|gb|ACL18610.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 71 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +R+ Q+E A V+ ENG + S+ A + + +E S + I+ Sbjct: 3 NKVEQLRRERGLNQEEFAKAIRVSRQTVSSIENGKYNPSLELAFAIADFFEKSIEEIFIY 62 Query: 94 EVIDRRYED 102 E + Sbjct: 63 ERRKENEKK 71 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 36/61 (59%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ +R+++G++Q EF K + + T+S+ E G+ P ++ A I +K ++ I+ Sbjct: 3 NKVEQLRRERGLNQEEFAKAIRVSRQTVSSIENGKYNPSLELAFAIADFFEKSIEEIFIY 62 Query: 176 D 176 + Sbjct: 63 E 63 >gi|329847855|ref|ZP_08262883.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842918|gb|EGF92487.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 63 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N +Q ++A VN E G S+ A L +E+ + I+ Sbjct: 3 NRLKVLRAERNWSQADLADRLKVSRQTVNAIETGKYDPSLPLAFQLARLFEMRIEDIFTP 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ + L + T++ E G+ P + A ++ ++ + ++ I+ Sbjct: 1 MNNRLKVLRAERNWSQADLADRLKVSRQTVNAIETGKYDPSLPLAFQLARLFEMRIEDIF 60 Query: 174 FGD 176 + Sbjct: 61 TPE 63 >gi|328471556|gb|EGF42436.1| DNA-binding protein [Listeria monocytogenes 220] Length = 125 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK N TQK++A S ++ +EN I L + D++ Sbjct: 2 EFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFL 61 Query: 91 YDG 93 D Sbjct: 62 LDD 64 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK ++Q + +G ST+S YE P I K+ ++ D+ Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|237745238|ref|ZP_04575719.1| phage transcriptional repressor [Fusobacterium sp. 7_1] gi|229432467|gb|EEO42679.1| phage transcriptional repressor [Fusobacterium sp. 7_1] Length = 204 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 30/79 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I +RK N TQ E+A + ++ +E I + ++I + Sbjct: 3 NIGEKIIFLRKKNKITQDELADALEISKQSILNYETEKRQIPIDVLSKIATFFKIPIEAF 62 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + + N ++ Sbjct: 63 FSDNYDNFEEIKNNNTIKI 81 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 4/93 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y IG ++ +RK ++Q E L + ++ NYE + I KI K ++ Sbjct: 1 MYNIGEKIIFLRKKNKITQDELADALEISKQSILNYETEKRQIPIDVLSKIATFFKIPIE 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + + + K N + K K S+ Sbjct: 61 AFFSDN----YDNFEEIKNNNTIKIPIISKVSA 89 >gi|255092519|ref|ZP_05321997.1| transcriptional regulator [Clostridium difficile CIP 107932] Length = 126 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 29/76 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + TRI+ IRK N +Q + ++ E + Y+ + + ++ + Sbjct: 3 NETISTRIRKIRKDANLSQPAFGEKLGVSKDVISNIEYNRVEPKPLFINYMCDVFNVNKE 62 Query: 89 WIYDGEVIDRRYEDVT 104 W+ +G + Sbjct: 63 WLLNGVGNMYISTEDD 78 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I R++ IRKD +SQ FG+ LG+ +SN E R P+ + V + Sbjct: 1 MSNETISTRIRKIRKDANLSQPAFGEKLGVSKDVISNIEYNRVEPKPLFINYMCDVFNVN 60 Query: 169 LDWIYFG 175 +W+ G Sbjct: 61 KEWLLNG 67 >gi|148994210|ref|ZP_01823503.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] gi|147927351|gb|EDK78382.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] Length = 158 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|145634268|ref|ZP_01789979.1| probable transcription regulator [Haemophilus influenzae PittAA] gi|145268712|gb|EDK08705.1| probable transcription regulator [Haemophilus influenzae PittAA] Length = 237 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+++R+ ++ MA SA+ +E + L E E+S +++ Sbjct: 11 IGNRIRELREFKKVSRNAMAEKLGLSLSALQNWETNQTEPVASMIITLAEELEVSPNYLL 70 Query: 92 DGEVI 96 GE Sbjct: 71 TGETN 75 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 K + +IG R++ +R+ K +S+ + LG+ S L N+E +T P + + + Sbjct: 4 KFKNNSSIGNRIRELREFKKVSRNAMAEKLGLSLSALQNWETNQTEPVASMIITLAEELE 63 Query: 167 KHLDWIYFGD 176 +++ G+ Sbjct: 64 VSPNYLLTGE 73 >gi|157960771|ref|YP_001500805.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845771|gb|ABV86270.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 182 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +K +RK +Q+E+A A S +++ E S S+ + + +S Sbjct: 2 DIGENLKRVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDF 61 Query: 91 YDGEVIDRRYEDV 103 + E + V Sbjct: 62 FSIEDSTLVEQKV 74 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 38/80 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG LK +RK+KG+SQ E K G+ NST+S E+ P + +K+ L Sbjct: 1 MDIGENLKRVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + ++ + + + ++ Sbjct: 61 FFSIEDSTLVEQKVVYRSDE 80 >gi|116495345|ref|YP_807079.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116105495|gb|ABJ70637.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 344 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I++ R A TQ+E+A AV+ +E G+ I L + + Sbjct: 7 IRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNTLLT 63 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ R G++Q E +G+ +S +E+G + P+I + ++ ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNT 60 Query: 172 IYFGDEVIVPKSIK 185 + + P+ + Sbjct: 61 LLTFSVTMDPEESR 74 >gi|116494490|ref|YP_806224.1| transcriptional regulator [Lactobacillus casei ATCC 334] gi|116104640|gb|ABJ69782.1| Predicted transcriptional regulator [Lactobacillus casei ATCC 334] Length = 62 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I +R TQ+E+A N +N EN ++ A L E + D ++ Sbjct: 3 NNIHALRMRQKLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAECLETTVDQLFQH 62 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + ++R + ++Q E + + T++ E + P + A + + + +D ++ Sbjct: 1 MENNIHALRMRQKLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAECLETTVDQLF 60 >gi|332716117|ref|YP_004443583.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3] gi|325062802|gb|ADY66492.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3] Length = 182 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R +N +Q+E+A A S ++L E+ + S+ + + I Sbjct: 4 DIGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGLAEF 63 Query: 91 YDGEVIDRRY 100 + E R Sbjct: 64 FAYEPETSRK 73 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R +SQ E + G+ NST+S E + P + ++I L + + Sbjct: 9 LRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGLAEFFAYEP 68 Query: 178 VIVPKSIKRAKG 189 K+ RA Sbjct: 69 ETSRKAFYRADE 80 >gi|306821038|ref|ZP_07454657.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550979|gb|EFM38951.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 164 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG I+ +R + +Q++ A + V E G + SI + N EI+ ++ Sbjct: 6 VGQEIRKLRTSKGYSQEKFATVCGLDRTYVAAVERGKRNISIENLYKIANALEITLSELF 65 Query: 92 D 92 D Sbjct: 66 D 66 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 41/91 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G ++ +R KG SQ +F + G+ + ++ E+G+ I+ KI + Sbjct: 1 MIKELVGQEIRKLRTSKGYSQEKFATVCGLDRTYVAAVERGKRNISIENLYKIANALEIT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 L ++ I + KG + +SK++ Sbjct: 61 LSELFDFGNPIQKTILLDIKGERFILESKEE 91 >gi|297623546|ref|YP_003704980.1| XRE family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164726|gb|ADI14437.1| transcriptional regulator, XRE family [Truepera radiovictrix DSM 17093] Length = 187 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G R++ +R A+ T +++A + S +++ ENG + S L + + Sbjct: 3 RHHLGHRLRALRLAHGYTLQQVAERSGLSRSFLSMLENGRTNVSAVRLQKLAGVFGLGLS 62 Query: 89 WIYDGE 94 + E Sbjct: 63 DLLPNE 68 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + +G RL+++R G + + + G+ S LS E GRT +K+ V Sbjct: 1 MNRHHLGHRLRALRLAHGYTLQQVAERSGLSRSFLSMLENGRTNVSAVRLQKLAGVFGLG 60 Query: 169 LDWIY 173 L + Sbjct: 61 LSDLL 65 >gi|298290822|ref|YP_003692761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296927333|gb|ADH88142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 471 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 33/75 (44%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G+R++ +R+A +Q ++A+ S +NL E+ ++ + L + I Sbjct: 6 PRIGSRVQRLRRAKRVSQADLAVALGISASYLNLIEHNRRRITVPLLMKLAGYFGIEPGE 65 Query: 90 IYDGEVIDRRYEDVT 104 + + + + + Sbjct: 66 LVENDESRLVGDLME 80 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 6/96 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R++ +R+ K +SQ + LG+ S L+ E R + K+ + Sbjct: 10 SRVQRLRRAKRVSQADLAVALGISASYLNLIEHNRRRITVPLLMKLAGYFGIEPGELVEN 69 Query: 176 DEVIVPKSIKRA------KGNQSSKKSKKDKKSSNP 205 DE + + N + + +D +SNP Sbjct: 70 DESRLVGDLMELFSDDVFAENALTNQDIRDLAASNP 105 >gi|254462881|ref|ZP_05076297.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206679470|gb|EDZ43957.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 219 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWK-DVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 ++P + T L Q+ + E + + +G ++ RK T E+A + Sbjct: 6 ISPEMVTKLS--QDPHVTSAGEREKVLEVAIGREVRSFRKQKEITVAELASMTGLSIGML 63 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + ENG S S+ L N + + Sbjct: 64 SKIENGNTSPSLSTLQTLANALSVPLTSFFRR 95 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 1/117 (0%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + D ++++ AIG ++S RK K ++ E + G+ LS E Sbjct: 9 EMVTKLSQDPHVTSAGEREKVLEVAIGREVRSFRKQKEITVAELASMTGLSIGMLSKIEN 68 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 G T P + + + L + +E K +G + ++ + N Sbjct: 69 GNTSPSLSTLQTLANALSVPLTSFFRRFEEQRTAVHTKAGEGVELEREGTRAGHQYN 125 >gi|186475021|ref|YP_001856491.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184191480|gb|ACC69445.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 90 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P + + ++ +R N +Q+E+A S V E G + S+ L N Sbjct: 8 PRSTPARQQLADSLRRLRAERNWSQEELAARCELDRSFVAHVERGARNISLDNVEKLANA 67 Query: 83 YEISFDWIYDGEVID 97 + + ++ Sbjct: 68 FGVGIADLFLRRDPK 82 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R ++ SQ E + S +++ E+G + K+ + ++ Sbjct: 21 LRRLRAERNWSQEELAARCELDRSFVAHVERGARNISLDNVEKLANAFGVGIADLF 76 >gi|88604161|ref|YP_504339.1| XRE family transcriptional regulator [Methanospirillum hungatei JF-1] gi|88189623|gb|ABD42620.1| transcriptional regulator, XRE family [Methanospirillum hungatei JF-1] Length = 70 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 34/70 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R +G++Q + + G+ T+ E+G+ P ++ A I + ++ ++ Sbjct: 1 MYTRIKEFRVRQGITQADLARKAGVRRETIVFLEKGKYNPSLRLAHHIACILNTSIEELF 60 Query: 174 FGDEVIVPKS 183 F D+ P Sbjct: 61 FFDDETGPDE 70 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RIK+ R TQ ++A A + E G + S+R A ++ S + ++ Sbjct: 4 RIKEFRVRQGITQADLARKAGVRRETIVFLEKGKYNPSLRLAHHIACILNTSIEELFF 61 >gi|83749268|ref|ZP_00946267.1| Hypothetical Protein RRSL_00891 [Ralstonia solanacearum UW551] gi|207725182|ref|YP_002255578.1| hypothetical protein RSMK00071 [Ralstonia solanacearum MolK2] gi|207743555|ref|YP_002259947.1| hypothetical protein RSIPO_01735 [Ralstonia solanacearum IPO1609] gi|83724049|gb|EAP71228.1| Hypothetical Protein RRSL_00891 [Ralstonia solanacearum UW551] gi|206590416|emb|CAQ37378.1| hypothetical protein RSMK00071 [Ralstonia solanacearum MolK2] gi|206594954|emb|CAQ61881.1| hypothetical protein RSIPO_01735 [Ralstonia solanacearum IPO1609] Length = 113 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R A +K+Q+ +A A + ++ E G+ + S+ + + ++ ++ Sbjct: 24 LGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 KR A +K R Sbjct: 84 ---APLDGVSLAPTGKRRANAASPPEIKRGR 111 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+K R SQ + + +S+ E+G P ++ I L + Sbjct: 23 ALGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPSVETLANICHCLGVTLSEL 82 Query: 173 Y 173 + Sbjct: 83 F 83 >gi|313633486|gb|EFS00309.1| ans operon transcriptional repressor, putative [Listeria seeligeri FSL N1-067] Length = 131 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/103 (10%), Positives = 35/103 (33%), Gaps = 1/103 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLDMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 D++ + + ++ + + +R + + Sbjct: 61 DYLLGQQSMPTFAPSELESEKDIAKRMTKISEDLRNEDDLKLD 103 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL +R+ +G S+ E + LG+ ST N+E G P++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLDMVTQIATLYDVSVDYLL 64 >gi|291287416|ref|YP_003504232.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884576|gb|ADD68276.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 182 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G +K++R +N T +++A + S ++ E + S ++ + + ++ Sbjct: 2 EFGKTVKELRLKHNMTLRDLAKTSGCSISFLSQLERDLISPTVASLRKIADALGVTITSF 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + G+ + V KR+ Sbjct: 62 FSGDDSETDSIVVRKDKRV 80 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 5/97 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +K +R M+ + K G S LS E+ P + RKI + Sbjct: 1 MEFGKTVKELRLKHNMTLRDLAKTSGCSISFLSQLERDLISPTVASLRKIADALGVTITS 60 Query: 172 IYFGDEVIVPKSIKRAK-----GNQSSKKSKKDKKSS 203 + GD+ + R G+++SK + K Sbjct: 61 FFSGDDSETDSIVVRKDKRVRLGSKASKVVYESLKHR 97 >gi|182684266|ref|YP_001836013.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|221232045|ref|YP_002511197.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] gi|182629600|gb|ACB90548.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|220674505|emb|CAR69066.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] Length = 158 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q+EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|92116675|ref|YP_576404.1| XRE family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799569|gb|ABE61944.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis X14] Length = 483 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R + IR+ +Q ++A G S VNL E + + L L Y++ + Sbjct: 11 VGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRDLA 70 Query: 92 DGEVIDRRYEDVT 104 + E Sbjct: 71 TADEDRFFAELNE 83 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + IR+ G+SQ + + LG+ S ++ E+ + + ++ + L + DE Sbjct: 16 RRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRDLATADED 75 >gi|16804372|ref|NP_465857.1| hypothetical protein lmo2334 [Listeria monocytogenes EGD-e] gi|217963568|ref|YP_002349246.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|226224879|ref|YP_002758986.1| transcriptional regulator [Listeria monocytogenes Clip81459] gi|254831241|ref|ZP_05235896.1| DNA-binding protein [Listeria monocytogenes 10403S] gi|254901140|ref|ZP_05261064.1| DNA-binding protein [Listeria monocytogenes J0161] gi|254992018|ref|ZP_05274208.1| DNA-binding protein [Listeria monocytogenes FSL J2-064] gi|255022554|ref|ZP_05294540.1| DNA-binding protein [Listeria monocytogenes FSL J1-208] gi|255025516|ref|ZP_05297502.1| DNA-binding protein [Listeria monocytogenes FSL J2-003] gi|255519749|ref|ZP_05386986.1| DNA-binding protein [Listeria monocytogenes FSL J1-175] gi|284802775|ref|YP_003414640.1| hypothetical protein LM5578_2532 [Listeria monocytogenes 08-5578] gi|284995917|ref|YP_003417685.1| hypothetical protein LM5923_2482 [Listeria monocytogenes 08-5923] gi|16411822|emb|CAD00412.1| lmo2334 [Listeria monocytogenes EGD-e] gi|217332838|gb|ACK38632.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|225877341|emb|CAS06055.1| Putative transcriptional regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|284058337|gb|ADB69278.1| hypothetical protein LM5578_2532 [Listeria monocytogenes 08-5578] gi|284061384|gb|ADB72323.1| hypothetical protein LM5923_2482 [Listeria monocytogenes 08-5923] gi|307571856|emb|CAR85035.1| HTH-type transcriptional regulator, putative [Listeria monocytogenes L99] gi|328465370|gb|EGF36617.1| DNA-binding protein [Listeria monocytogenes 1816] Length = 115 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK N TQK++A S ++ +EN I L + D++ Sbjct: 2 EFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFL 61 Query: 91 YDG 93 D Sbjct: 62 LDD 64 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK ++Q + +G ST+S YE P I K+ ++ D+ Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|320006230|gb|ADW01260.1| xre family toxin-antitoxin system [Lactobacillus phage LF1] Length = 107 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 1/73 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 D R+ +R+ ++ +A +E G L N + +S D+ Sbjct: 3 DFSKRLSVLREQKGWSKTYVAKQIGLTSMQTYANYEYGRREPDFETTKKLANLFNVSTDY 62 Query: 90 IYDGEVIDRRYED 102 + D Sbjct: 63 LLGRAAPDEGRNT 75 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 RL +R+ KG S+ K +G+ T +NYE GR P+ + +K+ + Sbjct: 1 MSDFSKRLSVLREQKGWSKTYVAKQIGLTSMQTYANYEYGRREPDFETTKKLANLFNVST 60 Query: 170 DWIY 173 D++ Sbjct: 61 DYLL 64 >gi|315304464|ref|ZP_07874746.1| DNA-binding protein [Listeria ivanovii FSL F6-596] gi|313627167|gb|EFR96018.1| DNA-binding protein [Listeria ivanovii FSL F6-596] Length = 118 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK N TQK++A S ++ +EN I L + D++ Sbjct: 5 EFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFL 64 Query: 91 YDG 93 D Sbjct: 65 LDD 67 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G +L +RK ++Q + +G ST+S YE P I K+ ++ Sbjct: 1 MGILEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTT 60 Query: 169 LDWIY 173 D++ Sbjct: 61 TDFLL 65 >gi|229145225|ref|ZP_04273615.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228638236|gb|EEK94676.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] Length = 113 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG I+ +RK TQ+E+A N ++ + E G + S+ + E+S D + Sbjct: 2 VGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPDEVL 61 Query: 92 D 92 + Sbjct: 62 N 62 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 34/77 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++ +RK +G++Q E + + + + + E+G + +KI + D + Sbjct: 1 MVGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPDEV 60 Query: 173 YFGDEVIVPKSIKRAKG 189 V + + +R + Sbjct: 61 LNFSNVNLIDNPQREES 77 >gi|319424700|gb|ADV52774.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 188 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + + A ++ + E G S +I + + + IS + Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTP 71 Query: 96 IDR 98 + Sbjct: 72 QSQ 74 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK++R KG S + + G+ + + E+G + P I KI L Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 >gi|332142476|ref|YP_004428214.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552498|gb|AEA99216.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 175 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +R+ + ++A GA +S ++ E G + ++ L + ++ F + Sbjct: 9 LGRHLKKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVPFGQLV 68 Query: 92 D 92 Sbjct: 69 Q 69 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF- 174 LK +R+DKG+S + G+ S LS EQG P + ++ + + Sbjct: 11 RHLKKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVPFGQLVQP 70 Query: 175 -----GDEVIVPKSIKRAKG 189 G+ + + I++ +G Sbjct: 71 LSTSVGENGVEVRLIEQGQG 90 >gi|315283384|ref|ZP_07871592.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313612974|gb|EFR86908.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 118 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK N TQK++A+ S ++ +EN I L + D++ Sbjct: 5 EFGEKLIHLRKKNRLTQKQLAVKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFL 64 Query: 91 YDG 93 D Sbjct: 65 LDD 67 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G +L +RK ++Q + +G ST+S YE P I K+ ++ Sbjct: 1 MGVLEFGEKLIHLRKKNRLTQKQLAVKIGTTASTISKYENDNHRPPIFILAKLAEILGTT 60 Query: 169 LDWIY 173 D++ Sbjct: 61 TDFLL 65 >gi|303235344|ref|ZP_07321962.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302493658|gb|EFL53446.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 174 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 7/96 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RK+N +Q+++A + + V+ +E G+ + L S + Sbjct: 4 ENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVLLGE 63 Query: 94 EVIDRRY-------EDVTNKKRLDPYAIGARLKSIR 122 V + E + ++K R Sbjct: 64 NVEETEQTELYKISEKLEEINMQFFENKQKKIKVYR 99 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +KS+RK G+SQ + + + T+S +E+G ++P+ K+ ++ + + Sbjct: 1 MLNENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKK 195 G+ V + + K ++ ++ Sbjct: 61 L-GENVEETEQTELYKISEKLEE 82 >gi|300717478|ref|YP_003742281.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299063314|emb|CAX60434.1| Transcriptional regulator [Erwinia billingiae Eb661] Length = 185 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ +A + SA++ E S ++ L Y +S + Sbjct: 9 GRRLSEIRQQMGMSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDR-RYEDVTNKKRLDPYAIGARLKSIR 122 V D + + +D + G LK I Sbjct: 69 EPVKDEAPKVVIDAHELIDIGSQGVSLKLIH 99 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G RL IR+ GMSQ +L G+ +S +S EQ + P + +K+ +V L Sbjct: 7 APGRRLSEIRQQMGMSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEF 66 Query: 173 Y 173 + Sbjct: 67 F 67 >gi|296393743|ref|YP_003658627.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180890|gb|ADG97796.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 156 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 19/133 (14%) Query: 37 KDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWIYDGEV 95 + +R A ++ E+ ++ E + ENG+ +I L ++ Sbjct: 22 RQVRLAKGWSRAELNRLSDVSEHTIKAIENGIVKDPNIETVARLVKALDLQM-------- 73 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 + + L +R G+SQ + GM L+ E+ T Sbjct: 74 ----------RDVVKVPYHVRMLSDLRHLAGLSQTSLARRAGMSPPALARLERAETDMTD 123 Query: 156 KPARKIKQVTKKH 168 + A+ + +V + Sbjct: 124 EKAQALARVLRTT 136 Score = 38.4 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 16/51 (31%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + D+R +Q +A A A+ E + A L + Sbjct: 86 LSDLRHLAGLSQTSLARRAGMSPPALARLERAETDMTDEKAQALARVLRTT 136 >gi|71904298|ref|YP_281101.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71803393|gb|AAX72746.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] Length = 68 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+ R K +SQ L+G+ T++ E+G P I I +V K LD +++ Sbjct: 6 LKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWE 63 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 23/57 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R + +Q+ +A + E G + +I + + + + D ++ Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|94310168|ref|YP_583378.1| anaerobic benzoate catabolism transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354020|gb|ABF08109.1| transcriptional regulator, XRE family with shikimate kinase activity [Cupriavidus metallidurans CH34] Length = 316 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 T E Y +G RI+ +R A ++K++A GA+ E + E G + S+ + N Sbjct: 20 TGERDPYLTHLGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVAN 79 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + N + + + L + Sbjct: 80 ALDVPLPVVLAEVDGHADAGGAGNPRATEFSQLIQWLAQL 119 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 2/84 (2%) Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 D + E L G R++S+R +GMS+ + + + L+N Sbjct: 4 DPDPLMTAEGRPDNRATGERDPYLTHL--GERIRSLRAARGMSRKDLARGADVSERYLAN 61 Query: 146 YEQGRTIPEIKPARKIKQVTKKHL 169 E G + R++ L Sbjct: 62 LETGTGNASVLLLRQVANALDVPL 85 >gi|297158498|gb|ADI08210.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 159 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R++ + +++A A ++ E G+ S L IS + +Y Sbjct: 9 LGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLY 68 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 L+ R+ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 11 EFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLYVQ 70 Query: 174 --FGDEVIVPKSIKRA 187 DE ++ R+ Sbjct: 71 AGILDERERDETETRS 86 >gi|295700850|ref|YP_003608743.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440063|gb|ADG19232.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 211 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R+A + T + + S ++ ENG+ S + + +I + Sbjct: 15 DLGRRVRAARQAQDLTLETASRLCGVSRSTLSKIENGLMSPTFDVLQKIVLGLKIEIGEL 74 Query: 91 Y 91 + Sbjct: 75 F 75 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ R+ + ++ +L G+ STLS E G P +KI K + ++ Sbjct: 18 RRVRAARQAQDLTLETASRLCGVSRSTLSKIENGLMSPTFDVLQKIVLGLKIEIGELF 75 >gi|258543105|ref|YP_003188538.1| XRE family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634183|dbj|BAI00159.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01] gi|256637243|dbj|BAI03212.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-03] gi|256640295|dbj|BAI06257.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-07] gi|256643352|dbj|BAI09307.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-22] gi|256646407|dbj|BAI12355.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-26] gi|256649460|dbj|BAI15401.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-32] gi|256652446|dbj|BAI18380.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655504|dbj|BAI21431.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-12] Length = 138 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 32/93 (34%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 M LE L + + P+ + K +G RI+ R + + +++ Sbjct: 43 MAAQIDLEQLLGTYAPPPQVEAPKRIRNDKRLGFRIRQRRHELHMSLEQLGHAIGCTYQQ 102 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +E G + ++ W ++G Sbjct: 103 MQKYETGKNAIKATLLPTFATALDVPLTWFFEG 135 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 2/92 (2%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 +I + + + E + ++ R + MS + G +G + Sbjct: 46 QIDLEQLLGTYAPPPQVEAPKRIRNDKRLGFR--IRQRRHELHMSLEQLGHAIGCTYQQM 103 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 YE G+ + L W + G Sbjct: 104 QKYETGKNAIKATLLPTFATALDVPLTWFFEG 135 >gi|255262954|ref|ZP_05342296.1| DNA-binding protein [Thalassiobium sp. R2A62] gi|255105289|gb|EET47963.1| DNA-binding protein [Thalassiobium sp. R2A62] Length = 190 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 30/66 (45%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G ++ +RKA T ++A ++ ++ E GM S+ +L ++S Sbjct: 7 ERVRTLGADLRALRKARGLTLVDLAETLDRSVGWLSQVERGMSEPSVTDLRHLAAALDVS 66 Query: 87 FDWIYD 92 ++ Sbjct: 67 VSSLFR 72 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A L+++RK +G++ ++ + L LS E+G + P + R + + ++ Sbjct: 14 ADLRALRKARGLTLVDLAETLDRSVGWLSQVERGMSEPSVTDLRHLAAALDVSVSSLF 71 >gi|284038170|ref|YP_003388100.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283817463|gb|ADB39301.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 67 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K VG RIK+ R TQ+E + VN +E G + ++ + Sbjct: 1 MTELKKQVGQRIKEARNQKGITQREFGKMLGVSHTTVNGYETGKQNLTLDTLEKVAAALG 60 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 R+K R KG++Q EFGK+LG+ ++T++ YE G+ + K+ Sbjct: 10 QRIKEARNQKGITQREFGKMLGVSHTTVNGYETGKQNLTLDTLEKVAAALGM 61 >gi|228993831|ref|ZP_04153735.1| hypothetical protein bpmyx0001_45550 [Bacillus pseudomycoides DSM 12442] gi|228765887|gb|EEM14537.1| hypothetical protein bpmyx0001_45550 [Bacillus pseudomycoides DSM 12442] Length = 73 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 30/63 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++R + +Q+++A + L E G + SI L + ++++ + ++ Sbjct: 10 NRVREMRARHKWSQQDLAKKIGATRQTIGLIEKGDYAPSITLVLKISKAFQVTVEEVFFL 69 Query: 94 EVI 96 E Sbjct: 70 EEK 72 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D + R++ +R SQ + K +G T+ E+G P I KI + + + Sbjct: 4 DSGMLINRVREMRARHKWSQQDLAKKIGATRQTIGLIEKGDYAPSITLVLKISKAFQVTV 63 Query: 170 DWIYFGDE 177 + ++F +E Sbjct: 64 EEVFFLEE 71 >gi|153953129|ref|YP_001393894.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346010|gb|EDK32546.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 65 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 IK +RK N Q+++A +N EN ++ A L N + D +++ + Sbjct: 5 IKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKLFEPD 63 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK+K Q + LG+ T++ E + P + A K+ + +D ++ Sbjct: 1 MKNSIKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKLF 60 Query: 174 FGD 176 D Sbjct: 61 EPD 63 >gi|77919058|ref|YP_356873.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77545141|gb|ABA88703.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 188 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 34/92 (36%), Gaps = 2/92 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K R T + + + + ++ E G+ S++ + L + +S + Sbjct: 6 IGKKLKTTRLGKGLTIQGLTNLSGVSANMISRIERGLTVPSVKILMKLASALGMSIGYFV 65 Query: 92 D--GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + L Y ++ S+ Sbjct: 66 EEAEKSSTVILTRKGQGEPLFFYKDKQQISSL 97 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG +LK+ R KG++ L G+ + +S E+G T+P +K K+ Sbjct: 1 MIKTLIGKKLKTTRLGKGLTIQGLTNLSGVSANMISRIERGLTVPSVKILMKLASALGMS 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 + + E + R Sbjct: 61 IGYFVEEAEKSSTVILTRK 79 >gi|294632403|ref|ZP_06710963.1| DNA-binding protein [Streptomyces sp. e14] gi|292835736|gb|EFF94085.1| DNA-binding protein [Streptomyces sp. e14] Length = 207 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 V +++ +R+ + T + A A + ++ E G S+ L L Y + Sbjct: 17 PAVAPQLRALRRRASLTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLALARVYGTTVSE 76 Query: 90 IYDGEVIDRR 99 + V DR Sbjct: 77 LLGETVADRD 86 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ +L+++R+ ++ + G+ + LS E G+ P + + +V + + Sbjct: 18 AVAPQLRALRRRASLTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLALARVYGTTVSEL 77 Query: 173 YFGDEVIVPKSIKRAKGNQSSK 194 G+ V +I RA + ++ Sbjct: 78 L-GETVADRDAIVRAGDMEPTR 98 >gi|229070587|ref|ZP_04203825.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228712492|gb|EEL64429.1| Transcriptional regulator, MerR [Bacillus cereus F65185] Length = 186 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 ++G +I RK T K +A A+ S ++ E G+ + S++ + I ++ Sbjct: 7 NIGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNF 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + +K++ G + +E L+ + T S+ E Sbjct: 67 FLEDTNTEELVVRADQRKKMTFPESGNVSYELLSPNLDGSLELA-LMNLLPQTASSME 123 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ IG ++ + RKD G++ +L + S LS E+G T P ++ + I Sbjct: 1 MDMNNINIGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALN 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 IPL-FNFFLEDTNTEELVVRADQRKK 85 >gi|255520348|ref|ZP_05387585.1| hypothetical protein LmonocFSL_03812 [Listeria monocytogenes FSL J1-175] Length = 237 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 36/81 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AI +LK RK K +Q + +G+ + +E+ +IP +K + I +V +D+ Sbjct: 1 MAIHMKLKEERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKIICRVFDITMDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + + +K K + Sbjct: 61 LIKDEVDTKDNQLKYMKLGKD 81 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K+ RK TQ +A V +E +++ + ++I+ D++ Sbjct: 3 IHMKLKEERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKIICRVFDITMDYLI 62 Query: 92 DGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 E ++ K LD + IRK +S+ E Sbjct: 63 KDEVDTKDNQLKYMKLGKDILDLANERYPIDFIRKYHIISKEEI 106 >gi|187479415|ref|YP_787440.1| transcriptional regulator [Bordetella avium 197N] gi|115424002|emb|CAJ50555.1| putative transcriptional regulator [Bordetella avium 197N] Length = 111 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWIYD 92 R++ R TQKE+A + SA+ +E+G + S L L +S W+ Sbjct: 6 DRLRTARNTRGWTQKELAELSGLTPSAIGNYESGQRAQASASAMLKLAEVLGVSPGWLAQ 65 Query: 93 GEV 95 G+ Sbjct: 66 GDS 68 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLDWI 172 RL++ R +G +Q E +L G+ S + NYE R K+ +V W+ Sbjct: 4 FSDRLRTARNTRGWTQKELAELSGLTPSAIGNYESGQRAQASASAMLKLAEVLGVSPGWL 63 Query: 173 YFGD 176 GD Sbjct: 64 AQGD 67 >gi|83590550|ref|YP_430559.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573464|gb|ABC20016.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 67 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 24/59 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ +R+ +Q ++A +SA + E G L + + ++ D ++ Sbjct: 8 EKLYQLRRERGLSQVKVASAVGITQSAYAMIERGQRYPRKETMKKLADYFGLTVDELFF 66 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 34/66 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +L +R+++G+SQ++ +G+ S + E+G+ P + +K+ Sbjct: 1 MVRFMRNEKLYQLRRERGLSQVKVASAVGITQSAYAMIERGQRYPRKETMKKLADYFGLT 60 Query: 169 LDWIYF 174 +D ++F Sbjct: 61 VDELFF 66 >gi|148259560|ref|YP_001233687.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402766|ref|YP_004282847.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146401241|gb|ABQ29768.1| putative transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325049627|dbj|BAJ79965.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 203 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ TQ+E+A A A++L E G S SI + + +S + Sbjct: 25 VGARLRRMRQIFGLTQRELARRAGVTNGAISLIEQGRVSPSISSLKKILDGIPMSLAEFF 84 Query: 92 DGEVIDRRY 100 ++ Sbjct: 85 TLDLTAPED 93 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ARL+ +R+ G++Q E + G+ N +S EQGR P I +KI L + Sbjct: 27 ARLRRMRQIFGLTQRELARRAGVTNGAISLIEQGRVSPSISSLKKILDGIPMSLAEFFTL 86 Query: 176 D 176 D Sbjct: 87 D 87 >gi|298372441|ref|ZP_06982431.1| transcriptional regulator [Bacteroidetes oral taxon 274 str. F0058] gi|298275345|gb|EFI16896.1| transcriptional regulator [Bacteroidetes oral taxon 274 str. F0058] Length = 66 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK R N TQ ++A +N E G + S +L + +E+S + ++ E Sbjct: 5 IKVERARKNITQGQLAEMVGVSRQTINAIELGKYNPSTVLSLKMSRVFEVSVNDLFCLED 64 Query: 96 ID 97 D Sbjct: 65 DD 66 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 33/65 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K R K ++Q + +++G+ T++ E G+ P + K+ +V + ++ ++ Sbjct: 1 MTNSIKVERARKNITQGQLAEMVGVSRQTINAIELGKYNPSTVLSLKMSRVFEVSVNDLF 60 Query: 174 FGDEV 178 ++ Sbjct: 61 CLEDD 65 >gi|86739602|ref|YP_480002.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566464|gb|ABD10273.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 81 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + TP + + G R++ R +Q+++A + V E G + S+ L L Sbjct: 1 MATPPLSTAAQTFGERVRAQRHELGLSQEQLADECGLHWTFVGQVERGRRNISLHNILKL 60 Query: 80 RNEYEISFDWIYDG 93 + +I + G Sbjct: 61 ADALKIDPAELVRG 74 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+++ R + G+SQ + G+ + + E+GR + K+ K + Sbjct: 13 FGERVRAQRHELGLSQEQLADECGLHWTFVGQVERGRRNISLHNILKLADALKIDPAELV 72 Query: 174 FG 175 G Sbjct: 73 RG 74 >gi|148259597|ref|YP_001233724.1| hypothetical protein Acry_0581 [Acidiphilium cryptum JF-5] gi|326402804|ref|YP_004282885.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146401278|gb|ABQ29805.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5] gi|325049665|dbj|BAJ80003.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 484 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ IR+ Q+++A S +N EN R A L + I + Sbjct: 17 GARIRQIREQRGLQQRDIARRLGLSPSYMNQIENDRRPVPPRLAAPLCDLLGIPLAEL 74 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GAR++ IR+ +G+ Q + + LG+ S ++ E R + A + + L Sbjct: 14 LFAGARIRQIREQRGLQQRDIARRLGLSPSYMNQIENDRRPVPPRLAAPLCDLLGIPLAE 73 Query: 172 IYFGDEV 178 + DEV Sbjct: 74 LSGDDEV 80 >gi|319655076|ref|ZP_08009143.1| hypothetical protein HMPREF1013_05766 [Bacillus sp. 2_A_57_CT2] gi|317393240|gb|EFV74011.1| hypothetical protein HMPREF1013_05766 [Bacillus sp. 2_A_57_CT2] Length = 65 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++ R N TQ+E+A S + +E L + Y +S + + Sbjct: 5 LGGNLRIQRFKKNLTQEEVAKAIGTSHSMIGRYERNKTRPRRGTLQKLADFYGVSVNEL 63 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ R K ++Q E K +G +S + YE+ +T P +K+ ++ + Sbjct: 8 NLRIQRFKKNLTQEEVAKAIGTSHSMIGRYERNKTRPRRGTLQKLADFYGVSVNEL 63 >gi|284009381|emb|CBA76570.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 137 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G RI+ RK TQK++ A++ +E L L + + + Sbjct: 3 MKSIGERIRLRRKELELTQKQLGKRVGVSHVAISQWEKEETEPKGDNLLSLADALMCTAE 62 Query: 89 WIYDGEVIDRR 99 +I G ++ Sbjct: 63 YILRGTTSEKP 73 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +IG R++ RK+ ++Q + GK +G+ + +S +E+ T P+ + Sbjct: 1 MEMKSIGERIRLRRKELELTQKQLGKRVGVSHVAISQWEKEETEPKGDNLLSLADALMCT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 ++I G P N + K S+ K+ N Sbjct: 61 AEYILRGTTSEKPIRCD----NDTYKYSRLTKREEN 92 >gi|257481782|ref|ZP_05635823.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 199 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 19 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 66 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 7/90 (7%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 I R + LD +G RL+SIRK KG+SQ E K G+ NST+S E+ P Sbjct: 4 FISTRPDKTWGNIALD---VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPS 60 Query: 155 IKPARKIKQVT-KKHLDWIYFGDEVIVPKS 183 I RK V + + F E VP++ Sbjct: 61 ISSLRK---VLGGIPMSMVEFFSEETVPEN 87 >gi|257067141|ref|YP_003153397.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256799021|gb|ACV29676.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 81 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +RK Q E+ ++L E G + SI AL L +E+ + I+ Sbjct: 17 NNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSIVVALSLARVFEVKVEDIFIL 76 Query: 94 EVIDR 98 E I+ Sbjct: 77 EEINE 81 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 42/73 (57%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K++ D + L S+RK+KGM+Q E G+ +G+ T+S E+G P I A + +V Sbjct: 7 KRKEDLLRLVNNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSIVVALSLARVF 66 Query: 166 KKHLDWIYFGDEV 178 + ++ I+ +E+ Sbjct: 67 EVKVEDIFILEEI 79 >gi|261339922|ref|ZP_05967780.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] gi|288317836|gb|EFC56774.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] Length = 191 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + RI+ R++ + E+A A+ + ++ E G S + L + I Sbjct: 6 DNMNQRISARIRLERESRGWSLSELADRASVSRAMIHKIERGESSPTATLLARLSGAFGI 65 Query: 86 SFDWIY 91 S + Sbjct: 66 SMSTLI 71 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R+ +G S E + + + E+G + P ++ + + Sbjct: 14 ARIRLERESRGWSLSELADRASVSRAMIHKIERGESSPTATLLARLSGAFGISMSTLIAR 73 Query: 176 DEVIVPKSIKRAK 188 E+ K ++ A Sbjct: 74 AEMQEGKLLRLAN 86 >gi|197284836|ref|YP_002150708.1| phage repressor [Proteus mirabilis HI4320] gi|194682323|emb|CAR42114.1| putative phage repressor [Proteus mirabilis HI4320] Length = 215 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 37/82 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R ++Q K+L + +++ +E T P+ + + + +V + +W+ Sbjct: 1 MHIRIKERRLQLSLTQEALAKMLSVSRVSITKWETRVTEPDGENLQALAKVLEVSPEWLL 60 Query: 174 FGDEVIVPKSIKRAKGNQSSKK 195 +G ++ + + KK Sbjct: 61 YGGNSSEADALIITRKTVNIKK 82 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK+ R + TQ+ +A + ++ +E + L E+S +W+ G Sbjct: 4 RIKERRLQLSLTQEALAKMLSVSRVSITKWETRVTEPDGENLQALAKVLEVSPEWLLYGG 63 Query: 95 VIDRRYEDVTNKKRLD 110 + +K ++ Sbjct: 64 NSSEADALIITRKTVN 79 >gi|116873702|ref|YP_850483.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742580|emb|CAK21704.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 115 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK N TQK++A S ++ +EN I L + D++ Sbjct: 2 EFGEKLIHLRKKNRLTQKQLAEKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFL 61 Query: 91 YDG 93 D Sbjct: 62 LDD 64 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK ++Q + + +G ST+S YE P I K+ ++ D+ Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAEKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|42784324|ref|NP_981571.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42740255|gb|AAS44179.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 66 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|326943618|gb|AEA19511.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar chinensis CT-43] Length = 131 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 35/86 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++++R + ++ I SA++ +E G + + + +S D+++ Sbjct: 6 FGQNLRNLRTLKGISLHKLGIELGVTGSAISSWELGNKEPNFDMVKKIAIYFLVSTDYLF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 + +V+D + +L G Sbjct: 66 NHQVLDNVEHEKAVVTQLAHKLYGKC 91 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + G L+++R KG+S + G LG+ S +S++E G P +KI Sbjct: 1 MKGNIFGQNLRNLRTLKGISLHKLGIELGVTGSAISSWELGNKEPNFDMVKKIAIYFLVS 60 Query: 169 LDWIY 173 D+++ Sbjct: 61 TDYLF 65 >gi|313609103|gb|EFR84807.1| ans operon transcriptional repressor, putative [Listeria monocytogenes FSL F2-208] Length = 131 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 1/81 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPKLSNRLTLLREKQGWSKAETARRLGLSAPSTYGNWEYGIREPDLEMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D++ + I ++ Sbjct: 61 DYLLGQQSIPTYAPSELQDEK 81 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P+++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLSAPSTYGNWEYGIREPDLEMVTQIATLYDVSVDYLLG 65 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKK 198 + + K+ K Sbjct: 66 QQSIPTYAPSELQDEKDIGKRMTK 89 >gi|313889218|ref|ZP_07822872.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844772|gb|EFR32179.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 179 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 32/76 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+++R TQ+E+A + + ++ E + S S+ L + Sbjct: 2 NIGNKIREMRIEKGLTQEELADRSELTKGFISQIERDLTSPSVDSLLDILEALGTDPGLF 61 Query: 91 YDGEVIDRRYEDVTNK 106 + E ++ + + Sbjct: 62 FKREENEKIIFNEEDF 77 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R +KG++Q E + +S E+ T P + I + Sbjct: 1 MNIGNKIREMRIEKGLTQEELADRSELTKGFISQIERDLTSPSVDSLLDILEALGTDPGL 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFKREE 66 >gi|303238242|ref|ZP_07324778.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302594288|gb|EFL64000.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 67 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 34/67 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K +R+ G +Q + + T+ + E G+ P I A KI +V K ++ I+ Sbjct: 1 MKNKIKDLREQSGFTQQYLADKVNVSRQTIISLENGKYNPSIFLAYKIAKVFKMTIEDIF 60 Query: 174 FGDEVIV 180 +E ++ Sbjct: 61 VFEEELL 67 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +IKD+R+ + TQ+ +A N + ENG + SI A + ++++ + I+ Sbjct: 3 NKIKDLREQSGFTQQYLADKVNVSRQTIISLENGKYNPSIFLAYKIAKVFKMTIEDIF 60 >gi|281416428|ref|YP_003347452.1| DNA binding protein [Streptococcus phage Abc2] gi|226823079|gb|ACO83206.1| DNA binding protein [Streptococcus phage Abc2] Length = 168 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 29/75 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ T+ E+A + + +E+G A L + +S ++ Sbjct: 2 NRLKELRELRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSIPYLLGY 61 Query: 94 EVIDRRYEDVTNKKR 108 + + + + Sbjct: 62 DTDNTLTDLIAKINE 76 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R+ + ++++E + +G+ T+ N+E G + A+K+ + + ++ Sbjct: 1 MNRLKELRELRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSIPYLLG 60 Query: 175 GD 176 D Sbjct: 61 YD 62 >gi|257784356|ref|YP_003179573.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257472863|gb|ACV50982.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 210 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +I + RK N TQ E+A + V +E + + + + +S ++ Sbjct: 4 QIAEARKLRNITQAELAEKMGTTQQTVQRYETNQVNIRMDKMIEMSEILNVSLAYLL 60 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ RK + ++Q E + +G T+ YE + + ++ ++ L ++ Sbjct: 1 MKYQIAEARKLRNITQAELAEKMGTTQQTVQRYETNQVNIRMDKMIEMSEILNVSLAYLL 60 >gi|255316687|ref|ZP_05358270.1| hypothetical protein CdifQCD-7_20172 [Clostridium difficile QCD-76w55] Length = 114 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 7/107 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN------QLESAVNLFENGMCSTSIRYALYLRNEYEI 85 G R K +RK TQ+E+ N +S ++ +EN + N Y + Sbjct: 4 FGERFKGLRKEMGLTQEELVEKFNKLNDTHFNKSTISQYENNKRKPELSILYKWANFYGV 63 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 S D+I G + E + K + LK K + + F Sbjct: 64 SLDFIL-GRSEIKSLELEDDMKAIKIAYEKMSLKDRAKMMFLLKEIF 109 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 6/89 (6%) Query: 114 IGARLKSIRKDKGMSQIEFGKL------LGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 G R K +RK+ G++Q E + ST+S YE + PE+ K Sbjct: 4 FGERFKGLRKEMGLTQEELVEKFNKLNDTHFNKSTISQYENNKRKPELSILYKWANFYGV 63 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 LD+I E+ + K + + + Sbjct: 64 SLDFILGRSEIKSLELEDDMKAIKIAYEK 92 >gi|222087820|ref|YP_002546358.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725268|gb|ACM28424.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 159 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 31/95 (32%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG +++ +R +N +Q E+ V +E+G S + + + + Sbjct: 33 RHVGQQLRILRIHSNLSQTELGHEVGLSYQQVQKYESGKNRISASMLYVIASRLNVPVNR 92 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 +DG +D R+ Sbjct: 93 FFDGLPPSESEVTDGIVPEVDERIAYIATAEGRRF 127 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +L+ +R +SQ E G +G+ + YE G+ I ++ + G Sbjct: 37 QQLRILRIHSNLSQTELGHEVGLSYQQVQKYESGKNRISASMLYVIASRLNVPVNRFFDG 96 >gi|254488744|ref|ZP_05101949.1| DNA-binding protein [Roseobacter sp. GAI101] gi|214045613|gb|EEB86251.1| DNA-binding protein [Roseobacter sp. GAI101] Length = 188 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 2/103 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + + R+K R A + +A + S V+ E G S +I L Sbjct: 1 MTDDPDAILNQLPRRLKAARAAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLT 60 Query: 81 NEYEISFDWIYDG--EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ F + DG + + G ++ + Sbjct: 61 RALQVDFAGLLDGGQRPAEIEVLRAGEVPTIHNLGSGCHIRIL 103 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK+ R +G+S KL G+ S +S E+G + P I + + + + Sbjct: 13 PRRLKAARAAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLD 72 Query: 175 GDEVIVPKSIKRA 187 G + + RA Sbjct: 73 GGQRPAEIEVLRA 85 >gi|163734643|ref|ZP_02142082.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161392136|gb|EDQ16466.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 218 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ RK T E++ ++ ENG S S+ L N + + Sbjct: 34 IGREVRGYRKQQGITVAELSALTGISIGMLSKIENGNTSPSLTTLQTLANALSVPLTSFF 93 Query: 92 DGEVIDR 98 R Sbjct: 94 RRFEESR 100 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D ++++ AIG ++ RK +G++ E L G+ LS E G T P Sbjct: 15 SQDPHGTRDGEREKVLEVAIGREVRGYRKQQGITVAELSALTGISIGMLSKIENGNTSPS 74 Query: 155 IKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + + L + +E + + +G + ++ + Sbjct: 75 LTTLQTLANALSVPLTSFFRRFEESRLAVHTRAGEGVEIDREGTRANH 122 >gi|237746811|ref|ZP_04577291.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229378162|gb|EEO28253.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 118 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 5/113 (4%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + +G I R TQ+ +A N AV+ E G +I + L + + Sbjct: 5 KEKTIAQAMGKAIAQKRMEKGLTQENVAEKLNIGYEAVSRIERGTVIPNIVRLVELADIF 64 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E D + KRL+ A R+ L Sbjct: 65 ECGIDELLIALSRRPINHANALLKRLEQLAEPD-----RELLLNVMTTLADRL 112 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 NK++ A+G + R +KG++Q + L + +S E+G IP I ++ Sbjct: 1 MQKNKEKTIAQAMGKAIAQKRMEKGLTQENVAEKLNIGYEAVSRIERGTVIPNIVRLVEL 60 Query: 162 KQVTKKHLDWIY 173 + + +D + Sbjct: 61 ADIFECGIDELL 72 >gi|254476881|ref|ZP_05090267.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] gi|214031124|gb|EEB71959.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] Length = 188 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + + R+K+ R+A + + +A + S V+ E G S +I L Sbjct: 1 MTENVDDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLT 60 Query: 81 NEYEISFDWIYDGE--VIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ F + D ++ ++ G ++ + Sbjct: 61 RALQVDFAGLLDSNEAQDRIEVLRDSDVPSIENMGEGCLIRIL 103 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ +G+S L G+ S +S E+G + P I + + + + Sbjct: 13 PARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLD 72 Query: 175 GDEVIVPKSIKR 186 +E + R Sbjct: 73 SNEAQDRIEVLR 84 >gi|190894008|ref|YP_001984302.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190699669|gb|ACE93752.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 246 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + TS + E + + + + VG +I+ R +N + ++ G V +E+ Sbjct: 98 VRTSRPAQAEQSNLARELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYES 157 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 G S L N +I ++G + +D R+ Sbjct: 158 GKNRVSASMLYELANCLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRR 214 Score = 43.0 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ R +S + G +G+ + YE G+ ++ K + + G Sbjct: 125 QQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEG 184 >gi|154496239|ref|ZP_02034935.1| hypothetical protein BACCAP_00524 [Bacteroides capillosus ATCC 29799] gi|150274322|gb|EDN01399.1| hypothetical protein BACCAP_00524 [Bacteroides capillosus ATCC 29799] Length = 110 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R++ KTQ E+A + SA L+E G + + L + Y IS D+++ Sbjct: 2 LSQRLRLLRQSRCKTQSEIAALLSISRSAYALYEAGKRQLNYDSLVTLADFYHISLDYLF 61 Query: 92 DGEVIDRRYEDVTNKKR 108 + T ++R Sbjct: 62 SRTDVPELQRSFTQEER 78 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL+ +R+ + +Q E LL + S + YE G+ + LD++ Sbjct: 1 MLSQRLRLLRQSRCKTQSEIAALLSISRSAYALYEAGKRQLNYDSLVTLADFYHISLDYL 60 Query: 173 YFGDEVIV 180 + +V Sbjct: 61 FSRTDVPE 68 >gi|159043315|ref|YP_001532109.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911075|gb|ABV92508.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 130 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 35/109 (32%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + G R+ R+A TQ ++A + +E + L +S Sbjct: 10 EATATFGDRLAGAREAVGLTQAQLAKRLGVKAKTLRDWEEDLSEPRANRIQMLSGLLNVS 69 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 W+ GE D+ + D A L+ ++ + +L Sbjct: 70 LSWLMTGEGEGIDAPDLGSDMPGDVRAALTELRQVQAEMTRLSGRMARL 118 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L R+ G++Q + K LG+ TL ++E+ + P + + + L W+ G+ Sbjct: 19 LAGAREAVGLTQAQLAKRLGVKAKTLRDWEEDLSEPRANRIQMLSGLLNVSLSWLMTGE 77 >gi|56696467|ref|YP_166824.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678204|gb|AAV94870.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 217 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 33/99 (33%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 + LQ+ + + +G ++ RK T E++ + ++ ENG S Sbjct: 10 TQLLQDPHSVREEREKVLEVAIGREVRAFRKQQGITVAELSKLTDLSIGMLSKIENGNTS 69 Query: 71 TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 S+ L N + + G R + L Sbjct: 70 PSLTTLQTLANALSVPLTAFFKGYEEKREAIHTKAGQGL 108 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 40/98 (40%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + +++ + ++++ AIG +++ RK +G++ E KL + LS E G Sbjct: 7 LRMTQLLQDPHSVREEREKVLEVAIGREVRAFRKQQGITVAELSKLTDLSIGMLSKIENG 66 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 T P + + + L + G E +A Sbjct: 67 NTSPSLTTLQTLANALSVPLTAFFKGYEEKREAIHTKA 104 >gi|75910258|ref|YP_324554.1| molybdate metabolism transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703983|gb|ABA23659.1| transcriptional regulator of molybdate metabolism, XRE family [Anabaena variabilis ATCC 29413] Length = 377 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K IR +Q+++A A+ ++ E+G + S+ AL + + ++ Sbjct: 9 NNLKAIRTRLGMSQQDLANIASVTRQTISGVESGQYAPSVAIALRIAKALGCQVEDLF 66 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR GMSQ + + + T+S E G+ P + A +I + ++ +++ Sbjct: 9 NNLKAIRTRLGMSQQDLANIASVTRQTISGVESGQYAPSVAIALRIAKALGCQVEDLFWL 68 Query: 176 DEVI 179 D+ + Sbjct: 69 DQDL 72 >gi|295694886|ref|YP_003588124.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295410488|gb|ADG04980.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 195 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 10/85 (11%), Positives = 28/85 (32%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + + +G ++ +R+ T +MA + + E G + ++ + Sbjct: 3 EPVDFSRRIGQILRSLRRDRGWTLDKMAAVTGVSKPMLGQIERGESNPTVVTLWKIATGL 62 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKR 108 + F R +++ Sbjct: 63 GVPFSTFLRDPDDPRVAIVPQSRQP 87 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+S+R+D+G + + + G+ L E+G + P + KI Sbjct: 13 QILRSLRRDRGWTLDKMAAVTGVSKPMLGQIERGESNPTVVTLWKIATGLGVPFSTFLRD 72 Query: 176 DEVIVPKSIKRAK 188 + + +++ Sbjct: 73 PDDPRVAIVPQSR 85 >gi|259046980|ref|ZP_05737381.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259036423|gb|EEW37678.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 69 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK+IR+D M+Q E +G+ T+ + E R P ++ A KI +V ++ I+ + Sbjct: 7 NLKAIREDSRMTQQELADKIGVRRETILHLENNRYNPSLEMALKIARVFGMSVEDIFRLN 66 Query: 177 EVI 179 E + Sbjct: 67 EEV 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K IR+ + TQ+E+A + EN + S+ AL + + +S + I+ Sbjct: 7 NLKAIREDSRMTQQELADKIGVRRETILHLENNRYNPSLEMALKIARVFGMSVEDIFR 64 >gi|227501064|ref|ZP_03931113.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227216837|gb|EEI82235.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 95 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 42/81 (51%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 +D ++ LD + +L IRK+KG++Q + G ++G+ T+S E+G P + Sbjct: 13 NNDKDTCQERSLDLLKLVNKLSEIRKEKGINQTDLGNMVGVSRQTISLIERGDYNPSVMV 72 Query: 158 ARKIKQVTKKHLDWIYFGDEV 178 A + +V ++ I+ +E Sbjct: 73 ALSLARVFDMRVEDIFGLEEE 93 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +IRK Q ++ ++L E G + S+ AL L +++ + I+ Sbjct: 31 NKLSEIRKEKGINQTDLGNMVGVSRQTISLIERGDYNPSVMVALSLARVFDMRVEDIFGL 90 Query: 94 EVI 96 E Sbjct: 91 EEE 93 >gi|187777958|ref|ZP_02994431.1| hypothetical protein CLOSPO_01550 [Clostridium sporogenes ATCC 15579] gi|187774886|gb|EDU38688.1| hypothetical protein CLOSPO_01550 [Clostridium sporogenes ATCC 15579] Length = 64 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK+ RK Q+++AI N +N EN + ++ A+ L E S + ++ Sbjct: 3 NRIKEFRKRLGYRQEDLAIKMNVTRQTINAIENNKYNPTLELAMKLARFLETSVEELF 60 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 30/64 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K RK G Q + + + T++ E + P ++ A K+ + + ++ ++ Sbjct: 1 MKNRIKEFRKRLGYRQEDLAIKMNVTRQTINAIENNKYNPTLELAMKLARFLETSVEELF 60 Query: 174 FGDE 177 D+ Sbjct: 61 LIDD 64 >gi|167465091|ref|ZP_02330180.1| transcriptional regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 87 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN------QLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +G IK++R + +Q+E+A N + ++ +EN + + +L +++ Sbjct: 5 IGKTIKELRIKHKLSQEELAEKLNKNFGTSINKGMISKWENDLGDPRLETVRHLSMLFDV 64 Query: 86 SFDWIYDGEVIDRR 99 S D++ E + Sbjct: 65 SLDFLLGLEKKEPE 78 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLG------MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 Y+IG +K +R +SQ E + L + +S +E P ++ R + + Sbjct: 3 YSIGKTIKELRIKHKLSQEELAEKLNKNFGTSINKGMISKWENDLGDPRLETVRHLSMLF 62 Query: 166 KKHLDWIYFGDEVIVPKSI 184 LD++ G E P++I Sbjct: 63 DVSLDFLL-GLEKKEPETI 80 >gi|218780466|ref|YP_002431784.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761850|gb|ACL04316.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K +G RI ++R NN TQ ++A +++ E G+ S++ + S Sbjct: 4 LEKKIGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTFPSVKTLARVAEALGSSL 63 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +D + + + +L+ + A++K++ Sbjct: 64 KQFFDFDEDE----GQGDGYQLELAKLIAQIKNL 93 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ +R + ++Q + + +G+ ++S E+G T P +K ++ + L + Sbjct: 10 KRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTFPSVKTLARVAEALGSSLKQFFDF 69 Query: 176 DEV 178 DE Sbjct: 70 DED 72 >gi|89891794|ref|ZP_01203296.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] gi|89515949|gb|EAS18614.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] Length = 269 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 1/91 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G I +RK TQ+E+ N + ENG + + + S D Sbjct: 3 QPELGNYIAQLRKEKGLTQEELVELCNINVRTIQRIENGDVTPRSYTIKNILSALGKSID 62 Query: 89 WIYDG-EVIDRRYEDVTNKKRLDPYAIGARL 118 ++ E +T K L + + A + Sbjct: 63 DVFKSVEKKAADLPAITYNKSLLGWGMIAGI 93 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G + +RK+KG++Q E +L + T+ E G P + I K Sbjct: 1 MNQPELGNYIAQLRKEKGLTQEELVELCNINVRTIQRIENGDVTPRSYTIKNILSALGKS 60 Query: 169 LDWIYFGDE 177 +D ++ E Sbjct: 61 IDDVFKSVE 69 >gi|27764000|emb|CAD60517.1| Cinorf4 protein [Streptomyces cinnamoneus] Length = 190 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ Q + + +K R + T +A + + E + S+ + L + Sbjct: 3 DLDQLTQSLARNLKRWRGERHFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADAL 62 Query: 84 EISFDWIYDGEV 95 +S + D E Sbjct: 63 GVSITTLLDYEQ 74 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 21/62 (33%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK R ++ + G+ + EQ RT P + K+ + + Sbjct: 13 RNLKRWRGERHFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 72 Query: 176 DE 177 ++ Sbjct: 73 EQ 74 >gi|120597109|ref|YP_961683.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1] gi|120557202|gb|ABM23129.1| transcriptional regulator, XRE family [Shewanella sp. W3-18-1] Length = 188 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 25/83 (30%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + + A ++ + E G S +I + + + IS + Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTP 71 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 + + A L Sbjct: 72 QSQGTVFRKPDELRQQPATDGML 94 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK++R KG S + + G+ + + E+G + P I KI L Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 >gi|332976082|gb|EGK12950.1| helix-turn-helix domain protein [Desmospora sp. 8437] Length = 359 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/122 (9%), Positives = 38/122 (31%), Gaps = 3/122 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +R+ TQ+++ + +E G + ++ L + + + Sbjct: 8 DQLRPLREQLTVTQEDLGRSVGVSRQTIAAWEKGESTPTVAQLFSLARTLGVPVEILLGR 67 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + + + ++ K + +L+ +T Y P Sbjct: 68 KKEQDFKLLFRADQP---ETLTPEMREALAKKAANYATVEQLVDEAPATPPAYAMEGYNP 124 Query: 154 EI 155 ++ Sbjct: 125 DL 126 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + P +L+ +R+ ++Q + G+ +G+ T++ +E+G + P + + + Sbjct: 1 MAPDVTLDQLRPLREQLTVTQEDLGRSVGVSRQTIAAWEKGESTPTVAQLFSLARTLGVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSK---KSKKDKKSSN 204 ++ + + K + RA ++ + KK++N Sbjct: 61 VEILLGRKKEQDFKLLFRADQPETLTPEMREALAKKAAN 99 >gi|298383894|ref|ZP_06993455.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|298263498|gb|EFI06361.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 102 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 5/84 (5%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWK-----DVGTRIKDIRKANNKTQKEMAIGAN 55 M +N +++ I TPE ++ + +G R+K R TQ+++A Sbjct: 6 MKINGCTPIEDLITEDFGAIGTPERDEFERGCEAFIIGERLKAERLKAGMTQEQLAAKIG 65 Query: 56 QLESAVNLFENGMCSTSIRYALYL 79 +S ++ ENG + + Sbjct: 66 TKKSYISRIENGHADIQLSTLFKI 89 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 85 ISFDWIYDGEVIDR-RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 + + + E ++ + + IG RLK+ R GM+Q + +G S + Sbjct: 12 TPIEDLITEDFGAIGTPERDEFERGCEAFIIGERLKAERLKAGMTQEQLAAKIGTKKSYI 71 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 S E G ++ KI Q + + + + Sbjct: 72 SRIENGHADIQLSTLFKIFQGLGRKISFTIW 102 >gi|257877810|ref|ZP_05657463.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811976|gb|EEV40796.1| predicted protein [Enterococcus casseliflavus EC20] Length = 166 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K+ RK N TQ +A + ++ +E G S + + + E +IS + + Sbjct: 9 LAMKLKEYRKKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISLETLL 68 Query: 92 DGEVIDRRYEDVTNKKR 108 E + + K Sbjct: 69 LEETKKDNDDLKVSIKY 85 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + + +LK RK ++Q +LL + + T+S +E G T P K KI + Sbjct: 3 EMKETILAMKLKEYRKKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDI 62 Query: 168 HLDWIYFGDEVIVPKSIKRA 187 L+ + + +K + Sbjct: 63 SLETLLLEETKKDNDDLKVS 82 >gi|240851107|ref|YP_002972509.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268230|gb|ACS51818.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 156 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 6/130 (4%) Query: 9 TSLKSLQEYTLIITPEIRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 T+ ++L + P ++ D+ G RI+ R + +QKE+ + + +E Sbjct: 21 TNARALATGGGLEVPTKNPHFIDILIGKRIRHRRISIGLSQKELGSHLSVSFQQIQKYEK 80 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR----LKSIR 122 + S + L + + ++ ++ Y I LD + LK+ R Sbjct: 81 DLNRVSAKCLLEIAQKLDVPVNFFYADLAIKEDLSTKETLLHLDQCTYSEKEHTLLKNFR 140 Query: 123 KDKGMSQIEF 132 + K Q Sbjct: 141 ELKAKKQKAI 150 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 T IG R++ R G+SQ E G L + + YE+ K +I Sbjct: 35 PTKNPHFIDILIGKRIRHRRISIGLSQKELGSHLSVSFQQIQKYEKDLNRVSAKCLLEIA 94 Query: 163 QVTKKHLDWIY 173 Q +++ Y Sbjct: 95 QKLDVPVNFFY 105 >gi|197284093|ref|YP_002149965.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227358035|ref|ZP_03842377.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194681580|emb|CAR40549.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227161770|gb|EEI46802.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 98 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 26/68 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ R+ + K +A + + +ENG+C + + E ++ Sbjct: 11 IGHKIRQQRQHLRLSAKAVAERVGVSQQQFSRYENGLCKIDVDMLFLIAKELNVTPTAFL 70 Query: 92 DGEVIDRR 99 + + Sbjct: 71 PSPLNEDP 78 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 4/83 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI--- 172 +++ R+ +S + +G+ S YE G ++ I + Sbjct: 13 HKIRQQRQHLRLSAKAVAERVGVSQQQFSRYENGLCKIDVDMLFLIAKELNVTPTAFLPS 72 Query: 173 -YFGDEVIVPKSIKRAKGNQSSK 194 D + ++ ++K S++ Sbjct: 73 PLNEDPIASSSAVTQSKLFWSAQ 95 >gi|99082554|ref|YP_614708.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038834|gb|ABF65446.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 204 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 25/78 (32%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E +VG I+ RK T + ++ + ++ E + S+ + Sbjct: 1 MQREKPSTEPNVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQIS 60 Query: 81 NEYEISFDWIYDGEVIDR 98 ++ D+ Sbjct: 61 AALDVGLDYFISASKPSD 78 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 19/56 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ RK ++ G+ LS E+ P + +I LD+ Sbjct: 16 IRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQISAALDVGLDYFI 71 >gi|239625605|ref|ZP_04668636.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239519835|gb|EEQ59701.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 190 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT I++ RK T KE++ ++ E S+ + E+++ ++ Sbjct: 2 LGTNIREYRKNKKLTIKELSERTGLSIGYISQVEREEAEPSLSSLRKIAREFDVPV-YVL 60 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + + ++RL Sbjct: 61 MDDHRNTHNLTIRREERL 78 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ RK+K ++ E + G+ +S E+ P + RKI + + + D Sbjct: 5 NIREYRKNKKLTIKELSERTGLSIGYISQVEREEAEPSLSSLRKIAREFDVPVYVLM--D 62 Query: 177 EVIVPKSIKRAKGNQSSKKSKKD 199 + ++ + + S + KK Sbjct: 63 DHRNTHNLTIRREERLSARIKKS 85 >gi|300777210|ref|ZP_07087068.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300502720|gb|EFK33860.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 260 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 28/72 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I+ +R +Q+E+A + +E+G + + + IS D + Sbjct: 6 ENIRYLRAQKKLSQQELAKEIFLSRVRYSKYEDGRSEAPYEVLIRISKYFNISIDLLLTV 65 Query: 94 EVIDRRYEDVTN 105 ++ ED+ N Sbjct: 66 DIRKYPLEDMIN 77 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ +R K +SQ E K + + S YE GR+ + +I + +D Sbjct: 1 MSIFSENIRYLRAQKKLSQQELAKEIFLSRVRYSKYEDGRSEAPYEVLIRISKYFNISID 60 Query: 171 WIYFGD 176 + D Sbjct: 61 LLLTVD 66 >gi|222087277|ref|YP_002545812.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724725|gb|ACM27881.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 180 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 29/83 (34%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + VG +++ IR +N +Q E+ + + +E+G S + N + Sbjct: 33 IDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIANCLNVPI 92 Query: 88 DWIYDGEVIDRRYEDVTNKKRLD 110 YDG +D Sbjct: 93 SRFYDGLPQAGSELVNGGLPEID 115 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +L+ IR +SQ E G + + + YE G+ +I + Y G Sbjct: 39 QQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIANCLNVPISRFYDG 98 >gi|159038929|ref|YP_001538182.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917764|gb|ABV99191.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 83 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 30/79 (37%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + V RI +R +++++A + E G S+ AL + +E+ + Sbjct: 3 ETVHNRIAVLRAERGISRRDLAGALGVHYQTIGYLERGEFRPSLHLALRIAAYFEVPVEV 62 Query: 90 IYDGEVIDRRYEDVTNKKR 108 ++ E R + + Sbjct: 63 VFSIEPFPRIGDATAAARH 81 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ +R ++G+S+ + LG+ T+ E+G P + A +I + ++ ++ Sbjct: 6 HNRIAVLRAERGISRRDLAGALGVHYQTIGYLERGEFRPSLHLALRIAAYFEVPVEVVFS 65 Query: 175 GD 176 + Sbjct: 66 IE 67 >gi|49188009|ref|YP_031262.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49480382|ref|YP_039162.1| DNA-binding protein; transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869927|ref|ZP_02214584.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635333|ref|ZP_02393648.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167640538|ref|ZP_02398801.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170687992|ref|ZP_02879205.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707752|ref|ZP_02898203.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177653033|ref|ZP_02935360.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567795|ref|ZP_03020707.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033125|ref|ZP_03100538.1| DNA-binding protein [Bacillus cereus W] gi|196039419|ref|ZP_03106724.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196045749|ref|ZP_03112979.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206976813|ref|ZP_03237716.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217962653|ref|YP_002341227.1| DNA-binding protein [Bacillus cereus AH187] gi|218234129|ref|YP_002369947.1| DNA-binding protein [Bacillus cereus B4264] gi|218906348|ref|YP_002454182.1| DNA-binding protein [Bacillus cereus AH820] gi|225867136|ref|YP_002752514.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227817933|ref|YP_002817942.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228910999|ref|ZP_04074807.1| hypothetical protein bthur0013_51400 [Bacillus thuringiensis IBL 200] gi|228917778|ref|ZP_04081318.1| hypothetical protein bthur0012_49810 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930173|ref|ZP_04093182.1| hypothetical protein bthur0010_48550 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936457|ref|ZP_04099255.1| hypothetical protein bthur0009_48940 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948890|ref|ZP_04111164.1| hypothetical protein bthur0007_50130 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229020383|ref|ZP_04177139.1| hypothetical protein bcere0030_48700 [Bacillus cereus AH1273] gi|229026612|ref|ZP_04182955.1| hypothetical protein bcere0029_48820 [Bacillus cereus AH1272] gi|229124679|ref|ZP_04253860.1| hypothetical protein bcere0016_49600 [Bacillus cereus 95/8201] gi|229141900|ref|ZP_04270426.1| hypothetical protein bcere0013_49870 [Bacillus cereus BDRD-ST26] gi|229153326|ref|ZP_04281504.1| hypothetical protein bcere0011_48560 [Bacillus cereus m1550] gi|229158737|ref|ZP_04286795.1| hypothetical protein bcere0010_49100 [Bacillus cereus ATCC 4342] gi|229187382|ref|ZP_04314525.1| hypothetical protein bcere0004_49170 [Bacillus cereus BGSC 6E1] gi|229199289|ref|ZP_04325956.1| hypothetical protein bcere0001_47910 [Bacillus cereus m1293] gi|229604287|ref|YP_002869393.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254686401|ref|ZP_05150260.1| dna-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724400|ref|ZP_05186184.1| dna-binding protein [Bacillus anthracis str. A1055] gi|254735606|ref|ZP_05193313.1| dna-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744306|ref|ZP_05201986.1| dna-binding protein [Bacillus anthracis str. Kruger B] gi|254755604|ref|ZP_05207637.1| dna-binding protein [Bacillus anthracis str. Vollum] gi|254757059|ref|ZP_05209087.1| dna-binding protein [Bacillus anthracis str. Australia 94] gi|301056635|ref|YP_003794846.1| DNA-binding transcriptional regulator [Bacillus anthracis CI] gi|49181936|gb|AAT57312.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49331938|gb|AAT62584.1| DNA-binding protein; transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164714250|gb|EDR19770.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167511581|gb|EDR86964.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529376|gb|EDR92128.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127309|gb|EDS96185.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170668101|gb|EDT18851.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172081808|gb|EDT66878.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561211|gb|EDV15184.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195994554|gb|EDX58509.1| DNA-binding protein [Bacillus cereus W] gi|196023580|gb|EDX62257.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196029579|gb|EDX68181.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206744948|gb|EDZ56352.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217065847|gb|ACJ80097.1| DNA-binding protein [Bacillus cereus AH187] gi|218162086|gb|ACK62078.1| DNA-binding protein [Bacillus cereus B4264] gi|218534878|gb|ACK87276.1| DNA-binding protein [Bacillus cereus AH820] gi|225790661|gb|ACO30878.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227003606|gb|ACP13349.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228584149|gb|EEK42300.1| hypothetical protein bcere0001_47910 [Bacillus cereus m1293] gi|228596086|gb|EEK53763.1| hypothetical protein bcere0004_49170 [Bacillus cereus BGSC 6E1] gi|228624721|gb|EEK81490.1| hypothetical protein bcere0010_49100 [Bacillus cereus ATCC 4342] gi|228629930|gb|EEK86581.1| hypothetical protein bcere0011_48560 [Bacillus cereus m1550] gi|228641515|gb|EEK97820.1| hypothetical protein bcere0013_49870 [Bacillus cereus BDRD-ST26] gi|228658774|gb|EEL14433.1| hypothetical protein bcere0016_49600 [Bacillus cereus 95/8201] gi|228734697|gb|EEL85348.1| hypothetical protein bcere0029_48820 [Bacillus cereus AH1272] gi|228740918|gb|EEL91160.1| hypothetical protein bcere0030_48700 [Bacillus cereus AH1273] gi|228810782|gb|EEM57129.1| hypothetical protein bthur0007_50130 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823289|gb|EEM69123.1| hypothetical protein bthur0009_48940 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829458|gb|EEM75086.1| hypothetical protein bthur0010_48550 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841883|gb|EEM86990.1| hypothetical protein bthur0012_49810 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228848654|gb|EEM93500.1| hypothetical protein bthur0013_51400 [Bacillus thuringiensis IBL 200] gi|229268695|gb|ACQ50332.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300378804|gb|ADK07708.1| DNA-binding protein; transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324329114|gb|ADY24374.1| dna-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 65 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|34762255|ref|ZP_00143261.1| Transcriptional regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888113|gb|EAA25173.1| Transcriptional regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 146 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D+ RI +R N+ TQ++MA S ++++E G + L + + + D Sbjct: 4 MADIKDRIFTLRTENSLTQEQMAKIFKVGISTISMWEKGERIPRPKLLQELCDYFNVDMD 63 Query: 89 WIYDGEVIDRRYEDVTNK 106 ++ I RY+ Sbjct: 64 YLMGRSDIKNRYQAGLKY 81 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I R+ ++R + ++Q + K+ + ST+S +E+G IP K +++ +D Sbjct: 4 MADIKDRIFTLRTENSLTQEQMAKIFKVGISTISMWEKGERIPRPKLLQELCDYFNVDMD 63 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ G I + K + SKK +K+ Sbjct: 64 YLM-GRSDIKNRYQAGLKYDWESKKEEKEN 92 >gi|307130525|ref|YP_003882541.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306528054|gb|ADM97984.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 102 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 LI + G R+K +R +Q+ A + ++ E G+ + ++ Sbjct: 28 LISMKNTKDISARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGV 87 Query: 79 LRNEYEISFDWIYD 92 + + EI ++D Sbjct: 88 IADRLEIQLQSLFD 101 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+K++R G+SQ F G+ + +S E+G P ++ I + L ++ Sbjct: 41 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADRLEIQLQSLF 100 >gi|238801890|ref|YP_002925093.1| DNA binding protein [Streptococcus phage 5093] gi|238558576|gb|ACR45906.1| DNA binding protein [Streptococcus phage 5093] Length = 170 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 3/88 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ T+ E+A + + +E+G A L + + +S ++ Sbjct: 2 NRLKELRELRKMTRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLADHFGVSIPYLLGY 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + V ++ +A LK Sbjct: 62 DTDNTFSDLVAK---INEWADERNLKQA 86 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R+ + M+++E + +G+ T+ N+E G + A+K+ + ++ Sbjct: 1 MNRLKELRELRKMTRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLADHFGVSIPYLLG 60 Query: 175 GD 176 D Sbjct: 61 YD 62 >gi|210613654|ref|ZP_03289813.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787] gi|210151084|gb|EEA82092.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787] Length = 118 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 33/89 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++VG +I+ R+ +Q E+A ++ + L E + + + Sbjct: 8 KSENLQEVGRKIRHYREKKKMSQLELAEAIGVTQNTIYLIETAQSEMKLEKLFRIAEVLD 67 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYA 113 ++ + + GE + + + + Sbjct: 68 VTPNKLLPGEAKTASNKFFEFEHMMKQLS 96 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 36/74 (48%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 K + +G +++ R+ K MSQ+E + +G+ +T+ E ++ +++ +I Sbjct: 4 PQVSKSENLQEVGRKIRHYREKKKMSQLELAEAIGVTQNTIYLIETAQSEMKLEKLFRIA 63 Query: 163 QVTKKHLDWIYFGD 176 +V + + G+ Sbjct: 64 EVLDVTPNKLLPGE 77 >gi|325290127|ref|YP_004266308.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324965528|gb|ADY56307.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 80 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +IK +RK+ N TQK++A ES +N ENG S++ + ++S + D Sbjct: 5 GIQIKALRKSLNMTQKQLAELVKLDESMINKIENGHSVGSVQTLSKIAAALKVSITELLD 64 Query: 93 GEVIDRRYEDVTNK 106 + + Sbjct: 65 DPCFPLENKKPEDD 78 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++K++RK M+Q + +L+ + S ++ E G ++ ++ KI K + Sbjct: 1 MVRPGIQIKALRKSLNMTQKQLAELVKLDESMINKIENGHSVGSVQTLSKIAAALKVSIT 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 + D+ P K+ + + Sbjct: 61 ELL--DDPCFPLENKKPEDDH 79 >gi|304440189|ref|ZP_07400079.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371238|gb|EFM24854.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 182 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +Y D+G ++K IR + N TQ E+A + + ++ E + S S+ + + S Sbjct: 2 RYKMDIGNKLKLIRISQNLTQDELAKRSELTKGFISQVERNLTSPSVTTLIDILEALGTS 61 Query: 87 FDWIYDGEVIDRRYEDVT 104 + + + + Sbjct: 62 PIEFFKDDEAKFFFSEDD 79 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK IR + ++Q E K + +S E+ T P + I + Sbjct: 5 MDIGNKLKLIRISQNLTQDELAKRSELTKGFISQVERNLTSPSVTTLIDILEALGTSPIE 64 Query: 172 IYFGDE 177 + DE Sbjct: 65 FFKDDE 70 >gi|218289525|ref|ZP_03493753.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218240393|gb|EED07575.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 223 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 1/91 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G ++ +RK N T ++A+ + + ++ ENG L + ++ ++ Sbjct: 3 QFGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQRGRPKPDTLKKLASALKVPYED 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + + T++ R + K Sbjct: 63 LLLHAGVLNEQISRTSESRDLKPVDPSWYKR 93 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 1/96 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHL 169 G L+ +RK++ ++ + G+ ++ +S E R P+ +K+ K Sbjct: 1 MSQFGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQRGRPKPDTLKKLASALKVPY 60 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + + V+ + + ++ K P Sbjct: 61 EDLLLHAGVLNEQISRTSESRDLKPVDPSWYKRQVP 96 >gi|210610950|ref|ZP_03288675.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787] gi|210152250|gb|EEA83257.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787] Length = 198 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 37/89 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G I+ R+A TQKE A + E + +E+G I + NE + + Sbjct: 15 EEIGKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQE 74 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + ++ T + + + + Sbjct: 75 LLFAKDTNTPKDNTTAEYPAYEFHTMSDV 103 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R+ + ++Q EF + LG T+ YE G + +I ++I + F Sbjct: 19 KAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQELLFA 78 Query: 176 DEVIVPKSIKRAK 188 + PK A+ Sbjct: 79 KDTNTPKDNTTAE 91 >gi|153811409|ref|ZP_01964077.1| hypothetical protein RUMOBE_01801 [Ruminococcus obeum ATCC 29174] gi|149832536|gb|EDM87620.1| hypothetical protein RUMOBE_01801 [Ruminococcus obeum ATCC 29174] Length = 121 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 44/100 (44%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 +K++ D A G +K+ RK KG+S+ + L + +++ E P ++ ++ Sbjct: 3 MKQSKEKFDFKAFGQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILYEL 62 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + +D +F + + +R + S+KD K Sbjct: 63 VTLLDVSVDQFFFPEREQEKSTRRRQLDTMLNGMSEKDLK 102 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 36/103 (34%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ + + +K G IK RKA ++ ++A N + EN S++ Sbjct: 2 IMKQSKEKFDFKAFGQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILYE 61 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 L ++S D + E + + LK + Sbjct: 62 LVTLLDVSVDQFFFPEREQEKSTRRRQLDTMLNGMSEKDLKIL 104 >gi|159185809|ref|NP_357025.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159140943|gb|AAK89810.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 472 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 31/90 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ TQ + A S +N EN S + L ++++ + Sbjct: 8 IGRKVRGLRENARATQAQFAERLGISASYLNQIENNQRPVSASVLVTLVEKFQLDMAELA 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 GE K L+ + Sbjct: 68 TGENDRLVSAVREALKDPLFMNYEPGLQEL 97 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 34/76 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R++ +Q +F + LG+ S L+ E + + + + + Sbjct: 6 LFIGRKVRGLRENARATQAQFAERLGISASYLNQIENNQRPVSASVLVTLVEKFQLDMAE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + G+ + +++ A Sbjct: 66 LATGENDRLVSAVREA 81 >gi|86157573|ref|YP_464358.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|197121618|ref|YP_002133569.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|220916382|ref|YP_002491686.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|85774084|gb|ABC80921.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] gi|196171467|gb|ACG72440.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] gi|219954236|gb|ACL64620.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 69 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R N +QK +A S V++ E G S + + + + G Sbjct: 10 NVRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPAALLGG 68 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R K +SQ +G+ S +S E+G+ P ++ K+ + + G Sbjct: 10 NVRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPAALLGG 68 >gi|330718084|ref|ZP_08312684.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 67 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RKA +Q E+A A +N EN S+ A L + + D ++ Sbjct: 3 NNIKTLRKAQKFSQDELAQAAGVTRQTINAIENDKYDPSLELAFKLASILLVRVDELFLW 62 Query: 94 EVID 97 + Sbjct: 63 HKEN 66 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K++RK + SQ E + G+ T++ E + P ++ A K+ + +D ++ Sbjct: 1 MKNNIKTLRKAQKFSQDELAQAAGVTRQTINAIENDKYDPSLELAFKLASILLVRVDELF 60 >gi|306831021|ref|ZP_07464183.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427044|gb|EFM30154.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 199 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK KT KE++ S ++ +ENG + + A L N + +S ++ Sbjct: 14 NRVNELRKQFGKTMKELSAETGIGLSTISNYENGYSTPKKKNAQILANYFGVSVPYLLGL 73 Query: 94 EVIDRRYED 102 + Sbjct: 74 DDNPVLKNP 82 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK G + E G+ ST+SNYE G + P+ K A+ + + ++ D+ Sbjct: 18 ELRKQFGKTMKELSAETGIGLSTISNYENGYSTPKKKNAQILANYFGVSVPYLLGLDDNP 77 Query: 180 VPKS 183 V K+ Sbjct: 78 VLKN 81 >gi|225868447|ref|YP_002744395.1| transcriptional regulator [Streptococcus equi subsp. zooepidemicus] gi|225870630|ref|YP_002746577.1| transcriptional regulator [Streptococcus equi subsp. equi 4047] gi|225700034|emb|CAW94064.1| putative transcriptional regulator [Streptococcus equi subsp. equi 4047] gi|225701723|emb|CAW99080.1| putative transcriptional regulator [Streptococcus equi subsp. zooepidemicus] Length = 65 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++IRK N TQ+E+A + ENG + SI A + + +S + I+ Sbjct: 3 NRLEEIRKENGITQEELASILEVSRQTIGSLENGRYNPSIILAFKIAKYFSLSIEDIFIY 62 Query: 94 EVI 96 E Sbjct: 63 EEE 65 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK+ G++Q E +L + T+ + E GR P I A KI + ++ I+ Sbjct: 1 MKNRLEEIRKENGITQEELASILEVSRQTIGSLENGRYNPSIILAFKIAKYFSLSIEDIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEEE 65 >gi|197121330|ref|YP_002133281.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171179|gb|ACG72152.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 192 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 8/72 (11%), Positives = 28/72 (38%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + P + VG ++ +R + + ++++ + + + E G + +I + Sbjct: 1 MAPAGKDLTPVVGGNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKIS 60 Query: 81 NEYEISFDWIYD 92 + + F + Sbjct: 61 SALSVPFSALIT 72 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 L+ +R + +S + KL G+ + L E G++ P I KI + Sbjct: 15 NLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSALIT 72 >gi|169823920|ref|YP_001691531.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302379963|ref|ZP_07268442.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|303234408|ref|ZP_07321047.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] gi|167830725|dbj|BAG07641.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302312189|gb|EFK94191.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|302494524|gb|EFL54291.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] Length = 134 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI-RYALYLRNEYEISFDWI 90 G+++K +R+ TQ E+A ++ +E + + + +++ Sbjct: 3 FGSKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDINFL 62 Query: 91 YDGEVI 96 E Sbjct: 63 LTVEDN 68 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI-KPARKIKQVTKKHLD 170 + G++LK +R+D+G++Q E LG+ T+SNYE T P +KI + ++ Sbjct: 1 MSFGSKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDIN 60 Query: 171 WIYFGDEVIVPKSIKR 186 ++ ++ V S K+ Sbjct: 61 FLLTVEDNFVLDSAKK 76 >gi|126735102|ref|ZP_01750848.1| putative Cro/CI transcriptional regulator [Roseobacter sp. CCS2] gi|126715657|gb|EBA12522.1| putative Cro/CI transcriptional regulator [Roseobacter sp. CCS2] Length = 123 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 33/97 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R N TQ+++A + +E GM S + ++ + + Sbjct: 9 VGKRIRHRRWMNGTTQQQLAEAVGIKFQQIQKYETGMNRVSASRLWDIAKVLGVNVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +G + + D L +R + Sbjct: 69 EGLDAQTDLDANNSDMPGDILTDKEALDLLRSYYAIP 105 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G R++ R G +Q + + +G+ + YE G I +V Sbjct: 1 MKHPVDIHVGKRIRHRRWMNGTTQQQLAEAVGIKFQQIQKYETGMNRVSASRLWDIAKVL 60 Query: 166 KKHLDWIYFG 175 ++ + + G Sbjct: 61 GVNVSFFFEG 70 >gi|56461519|ref|YP_156800.1| Cro/CI family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56180529|gb|AAV83251.1| Transcriptional regulator, Cro/CI family [Idiomarina loihiensis L2TR] Length = 191 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 28/102 (27%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + + + + R+ RK + E+A A + + E G + SI L Sbjct: 1 MTDKDKTAINEAIAKRVYTFRKQYGMSLDELAKNAEISKGMLVQIEKGRANPSIGILCKL 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 N +S I + + + Sbjct: 61 ANALAVSVADIVAVSDDPKVTIRQPQDIPTLWNGDHGGVARL 102 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 25/72 (34%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 K AI R+ + RK GMS E K + L E+GR P I K+ Sbjct: 1 MTDKDKTAINEAIAKRVYTFRKQYGMSLDELAKNAEISKGMLVQIEKGRANPSIGILCKL 60 Query: 162 KQVTKKHLDWIY 173 + I Sbjct: 61 ANALAVSVADIV 72 >gi|289642165|ref|ZP_06474316.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289508011|gb|EFD28959.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 286 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+G I+D RKA + + +++A A ++ E G+ S + IS + Sbjct: 7 RDLGDFIRDQRKAAHISVRQLARQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEV 66 Query: 90 IY 91 +Y Sbjct: 67 LY 68 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L+ +G ++ RK +S + + G+ N LS E+G P + ++I + Sbjct: 1 MPPLNVRDLGDFIRDQRKAAHISVRQLARQAGVSNPYLSQIERGLRKPSAEILQQIAKAL 60 Query: 166 KKHLDWIY 173 + + +Y Sbjct: 61 RISAEVLY 68 >gi|254828889|ref|ZP_05233576.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|255028672|ref|ZP_05300623.1| transcription regulator, putative [Listeria monocytogenes LO28] gi|258601302|gb|EEW14627.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] Length = 157 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|218676103|ref|YP_002394922.1| hypothetical protein VS_II0323 [Vibrio splendidus LGP32] gi|218324371|emb|CAV25742.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 521 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 31/171 (18%) Query: 32 VGTRIKDIRKANNKTQKEMAIG-ANQ------LESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK N+ T ++++ S +++ E G SI + ++ Sbjct: 30 LGTKIRNLRKRNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAQVFQ 89 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKR-------LDPYAIGARLKSIRKDKGMSQ-----IEF 132 + W D E + + + + I + +SQ +F Sbjct: 90 KNPTWFLDDESEQQAIAPDKGNRGGISGMALEPSFLFSNDILQIAIPEMLSQTGISGRQF 149 Query: 133 GKLL-----GMPNSTLSNYEQ-------GRTIPEIKPARKIKQVTKKHLDW 171 LL + + E+ R ++ I + ++ W Sbjct: 150 AHLLIRAHQESNQNHFPDLERAAEEVGLKRLNLSVEDLIDIARSLGINIRW 200 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ +P I I QV Sbjct: 28 HFLGTKIRNLRKRNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAQV 87 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K+ W D+ ++I KGN+ Sbjct: 88 FQKNPTWFL--DDESEQQAIAPDKGNR 112 >gi|148272464|ref|YP_001222025.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830394|emb|CAN01329.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 107 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 5/106 (4%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + G+R+++ R+ +Q+ +A + +A+ E G + S+R + + Sbjct: 1 MVTTVSDAAAEFGSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + ++ + G D +D D A RL+ R +G Sbjct: 61 SGLDVDAGLLVTGLTADMLPQDDG-----DSPAELIRLERERDRRG 101 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G+R++ R+ G+SQ +L G+ + L E+G+ P ++ KI + Sbjct: 11 EFGSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIASGLDVDAGLL 70 Query: 173 YFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 G ++P+ + + ++D++ + P Sbjct: 71 VTGLTADMLPQDDGDSPAELIRLERERDRRGTTP 104 >gi|119967867|ref|YP_950697.1| putative cI-like repressor [Staphylococcus phage PH15] gi|112790031|gb|ABI21751.1| putative cI-like repressor [Staphylococcus phage PH15] gi|329736005|gb|EGG72280.1| putative HTH-type transcriptional regulator AnsR [Staphylococcus epidermidis VCU045] Length = 107 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK +RK NN + A +S ++ +ENG + + N ++ + + Sbjct: 6 EIGKLIKQLRKENNINLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALNVTPESL 65 Query: 91 YDGEVIDRRYED 102 Sbjct: 66 LLKNKQPETEIQ 77 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +RK+ ++ +F +G+ STLS YE G ++ +I + + ++ Sbjct: 11 IKQLRKENNINLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALNVTPESLLLKNK 70 Query: 178 VIVPKSIKRA 187 + RA Sbjct: 71 QPETEIQHRA 80 >gi|317505856|ref|ZP_07963699.1| hypothetical protein HMPREF9336_00068 [Segniliparus rugosus ATCC BAA-974] gi|316255849|gb|EFV15076.1| hypothetical protein HMPREF9336_00068 [Segniliparus rugosus ATCC BAA-974] Length = 161 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 18/136 (13%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R+A ++ E+ A V ++E+ + +S + +Y Sbjct: 1 MRRAREARGLSRAELGRAAKTDAEVVAMWEDQGVVPTPARMKLAAEAVGLSVEDLYKPAQ 60 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 G+ L ++R G Q + +G+ +S E+G T Sbjct: 61 ------------------GGSPLAALRIRAGYGQRALAQRVGVSQPLVSRLERGSTELSQ 102 Query: 156 KPARKIKQVTKKHLDW 171 A+ + +D Sbjct: 103 DVAKSFAEALGVTVDE 118 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 19/57 (33%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 G+ + +R Q+ +A + V+ E G S A ++ D Sbjct: 62 GSPLAALRIRAGYGQRALAQRVGVSQPLVSRLERGSTELSQDVAKSFAEALGVTVDE 118 >gi|302535016|ref|ZP_07287358.1| DNA-binding protein [Streptomyces sp. C] gi|302443911|gb|EFL15727.1| DNA-binding protein [Streptomyces sp. C] Length = 294 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G ++ +R+ T +++A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGMELRKLREDKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCEVYEV 67 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+DKGM+ + + L + S +S E GR + R + +V + Sbjct: 16 MELRKLREDKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCEVYEV 67 >gi|298717602|ref|YP_003730244.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361791|gb|ADI78572.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 200 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 28/82 (34%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + V RIK RK+ + E++ A + + E G + SI + +S Sbjct: 20 QAVSDRIKSWRKSQKLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKIAAALGVSVAD 79 Query: 90 IYDGEVIDRRYEDVTNKKRLDP 111 I + ++ + Sbjct: 80 IVSISHAPDAWLIENSEMPVLW 101 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ R+KS RK + +S E + G+ L E+G P I KI + I Sbjct: 21 AVSDRIKSWRKSQKLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKIAAALGVSVADI 80 Query: 173 Y 173 Sbjct: 81 V 81 >gi|257865444|ref|ZP_05645097.1| predicted protein [Enterococcus casseliflavus EC30] gi|257871779|ref|ZP_05651432.1| predicted protein [Enterococcus casseliflavus EC10] gi|257799378|gb|EEV28430.1| predicted protein [Enterococcus casseliflavus EC30] gi|257805943|gb|EEV34765.1| predicted protein [Enterococcus casseliflavus EC10] Length = 135 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K+ R +Q+E+A ++++ +E G L L Y S D + Sbjct: 3 IGEALKNHRVTQQMSQEEVATKILVTRTSISNWETGKTVPDSLNLLKLSTLYGCSVDELL 62 Query: 92 DGE 94 E Sbjct: 63 KKE 65 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG LK+ R + MSQ E + + +++SN+E G+T+P+ K+ + +D Sbjct: 1 MTIGEALKNHRVTQQMSQEEVATKILVTRTSISNWETGKTVPDSLNLLKLSTLYGCSVDE 60 Query: 172 IYFGDEVIVPKSIK 185 + + + K+ + Sbjct: 61 LLKKERAGMKKNFR 74 >gi|229009876|ref|ZP_04167096.1| hypothetical protein bmyco0001_3460 [Bacillus mycoides DSM 2048] gi|228751494|gb|EEM01300.1| hypothetical protein bmyco0001_3460 [Bacillus mycoides DSM 2048] Length = 83 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I ++R ANN +Q +A N +N EN S+ A L + D ++ Sbjct: 22 NQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLFLY 81 Query: 94 E 94 + Sbjct: 82 K 82 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 24/59 (40%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 21 KNQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|258406641|ref|YP_003199382.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798868|gb|ACV69804.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 76 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +++G IK RK +Q+++A + +++ E G + S+ L + E Sbjct: 1 MMKPLEELGQEIKSRRKQLGLSQEKLADKCGFDRTYISMVERGKRNPSLLNLLKIAKGLE 60 Query: 85 ISFDWI 90 S + Sbjct: 61 ASVSEL 66 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +KS RK G+SQ + G + +S E+G+ P + KI + + + + Sbjct: 10 QEIKSRRKQLGLSQEKLADKCGFDRTYISMVERGKRNPSLLNLLKIAKGLEASVSEL 66 >gi|163751558|ref|ZP_02158780.1| transcriptional regulator, putative [Shewanella benthica KT99] gi|161328566|gb|EDP99719.1| transcriptional regulator, putative [Shewanella benthica KT99] Length = 184 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +K IRK +Q+E+A A S +++ E S S+ + + +S Sbjct: 4 DIGASLKVIRKQKGLSQRELAKRAGVTNSTISMIEKNSVSPSVNSLKKVLSGLSLSLVDF 63 Query: 91 YDGEVIDRRYEDV 103 + E + V Sbjct: 64 FSMEGNTQSEAKV 76 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IGA LK IRK KG+SQ E K G+ NST+S E+ P + +K+ L Sbjct: 2 HLDIGASLKVIRKQKGLSQRELAKRAGVTNSTISMIEKNSVSPSVNSLKKVLSGLSLSLV 61 Query: 171 WIYF--GDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G+ K + R+ D K Sbjct: 62 DFFSMEGNTQSEAKVVYRSDDLLDIGDGNLDYK 94 >gi|311747423|ref|ZP_07721208.1| putative toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] gi|126574781|gb|EAZ79152.1| putative toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] Length = 194 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +G +IK IRK E A + + ++ ENG +I + + N + Sbjct: 5 EHLTIQIGNKIKGIRKEKGWKLGEFADKSGMSIAMLSKIENGRVIPTIPSLMQIINTLNL 64 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + +D + +K+ D ++ Sbjct: 65 NLADFFSDLKVDGDFNGFIFRKKEDYVSLSK 95 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K IRK+KG EF GM + LS E GR IP I +I +L + Sbjct: 13 NKIKGIRKEKGWKLGEFADKSGMSIAMLSKIENGRVIPTIPSLMQIINTLNLNLADFFSD 72 >gi|71737818|ref|YP_272531.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558371|gb|AAZ37582.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|330873076|gb|EGH07225.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330986843|gb|EGH84946.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009416|gb|EGH89472.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 182 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F E VP++ Sbjct: 58 MVEFFSEETVPEN 70 >gi|66043508|ref|YP_233349.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63254215|gb|AAY35311.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 199 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 19 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 66 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 7/90 (7%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 R + LD +G RL+SIRK KG+SQ E K G+ NST+S E+ P Sbjct: 4 FTSTRPDKTWGNIALD---VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPS 60 Query: 155 IKPARKIKQVT-KKHLDWIYFGDEVIVPKS 183 I RK V + + F E VP++ Sbjct: 61 ISSLRK---VLGGIPMSMVEFFSEESVPEN 87 >gi|15900920|ref|NP_345524.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|111657887|ref|ZP_01408599.1| hypothetical protein SpneT_02000929 [Streptococcus pneumoniae TIGR4] gi|149242896|pdb|2P5T|A Chain A, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242898|pdb|2P5T|C Chain C, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242900|pdb|2P5T|E Chain E, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242902|pdb|2P5T|G Chain G, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|14972524|gb|AAK75164.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] Length = 158 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK ++ TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q+EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|328958843|ref|YP_004373754.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] gi|328675167|gb|AEB31212.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] Length = 65 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R + TQ+++A + ++L E G + S++ L + + + D ++ Sbjct: 3 NRIKVARIQVDLTQQQLAEKVDVTRQTISLIEKGKYNPSLKLCLNICHAVNKTLDELFWK 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K R ++Q + + + + T+S E+G+ P +K I K LD +++ Sbjct: 3 NRIKVARIQVDLTQQQLAEKVDVTRQTISLIEKGKYNPSLKLCLNICHAVNKTLDELFWK 62 Query: 176 D 176 + Sbjct: 63 E 63 >gi|227511067|ref|ZP_03941116.1| XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227085809|gb|EEI21121.1| XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 287 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 15/127 (11%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K R+A + TQK++A G +S ++ E G + + + L +IS D I Sbjct: 17 KLGDILKQTRQAQHMTQKQLAEGI-CSQSMLSAIEKGQYTPNANLLIALCRRLKISLDDI 75 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI------------RKDKGMSQIEFGKLLGM 138 N+K LD + + + + G +Q + LG+ Sbjct: 76 SLSSNFAIGRTRDFNQK-LDRLCNQHQYQKLFDFLQKPSVLDAIETDGQTQAYY-YYLGV 133 Query: 139 PNSTLSN 145 L Sbjct: 134 SKWHLQQ 140 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK R+ + M+Q + + + S LS E+G+ P + + K LD I Sbjct: 22 LKQTRQAQHMTQKQLAEGI-CSQSMLSAIEKGQYTPNANLLIALCRRLKISLDDI 75 >gi|197286055|ref|YP_002151927.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194683542|emb|CAR44394.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 97 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG +I R+ N T E+A + + +E G+ S+ + IS Sbjct: 9 KMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACFFGISLSD 68 Query: 90 IYDGEVIDRRYEDVT 104 ++ + D+ + Sbjct: 69 LFQLDDEDKVEIENK 83 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 3/96 (3%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N+ +G ++ R+ G++ E K +G+ S YE+G + + Sbjct: 2 NRSYPASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACF 61 Query: 165 TKKHLDWIYF---GDEVIVPKSIKRAKGNQSSKKSK 197 L ++ D+V + I GN++ +K Sbjct: 62 FGISLSDLFQLDDEDKVEIENKISNIIGNKNESFNK 97 >gi|54298316|ref|YP_124685.1| hypothetical protein lpp2375 [Legionella pneumophila str. Paris] gi|53752101|emb|CAH13528.1| hypothetical protein lpp2375 [Legionella pneumophila str. Paris] Length = 220 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 1/92 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIG-ANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G RI RK T KE+A A + ++ +E G S A L ++ + Sbjct: 2 DIREQIGNRITKARKELGITIKELAERTAELSPARISNWEQGTRSPGPMEAKLLADQLNV 61 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 S ++ + + + + + Sbjct: 62 SAAYLLCLTDNPQGDLIQNPENKFRHIPLLSM 93 Score = 41.5 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ RK+ G++ E + + + +SN+EQG P A+ + ++ Sbjct: 9 NRITKARKELGITIKELAERTAELSPARISNWEQGTRSPGPMEAKLLADQLNVSAAYLLC 68 Query: 175 GDEVIVPKSIKRAKG 189 + I+ + Sbjct: 69 LTDNPQGDLIQNPEN 83 >gi|15967045|ref|NP_387398.1| putative aldehyde dehydrogenase protein [Sinorhizobium meliloti 1021] gi|307302508|ref|ZP_07582265.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307316162|ref|ZP_07595606.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|17646727|gb|AAL41014.1|AF448466_4 putative aldehyde dehydrogenase [Sinorhizobium meliloti] gi|15076318|emb|CAC47871.1| Putative aldehyde dehydrogenase [Sinorhizobium meliloti 1021] gi|306898002|gb|EFN28744.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903178|gb|EFN33768.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 182 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 38/91 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+R++ +R + +Q+E+A A S ++L E+ + S+ + + I Sbjct: 4 DIGSRLRQVRLRHKLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILDGIPIGLAEF 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + E R ++ ++ + I Sbjct: 64 FSFEPEKSRRAFYAAEELVEIGKGPISYRQI 94 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RL+ +R +SQ E K G+ NST+S E + P + ++I L + Sbjct: 7 SRLRQVRLRHKLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILDGIPIGLAEFFSF 66 Query: 176 DEVIVPKSIKRA 187 + P+ +RA Sbjct: 67 E----PEKSRRA 74 >gi|17158094|ref|NP_478090.1| hypothetical protein pTET3_p18 [Corynebacterium glutamicum] gi|17059613|emb|CAD12221.1| hypothetical protein [Corynebacterium glutamicum] Length = 81 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +TP+ ++ +G RI+D+RK+ +Q+E+A + + V+ E G + S+ L L Sbjct: 1 MTPD-KKILIQLGGRIRDVRKSLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLA 59 Query: 81 NEYEISFDWIYDG 93 + + G Sbjct: 60 GVLGVDAGDLVTG 72 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +RK G+SQ E L GM + +S+ E+G + + V + G Sbjct: 15 IRDVRKSLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVLGVDAGDLVTG 72 >gi|325263717|ref|ZP_08130450.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030755|gb|EGB92037.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 120 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K +R+ N+ TQ+E+A S + +E L + + +S D++ G Sbjct: 12 LKRLREQNHITQRELADYLKVTRSTIAGYETKGKQPDYERLLRIAAYFGVSVDYLLTG 69 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK +R+ ++Q E L + ST++ YE P+ + +I +D+ Sbjct: 6 MKFASTLKRLREQNHITQRELADYLKVTRSTIAGYETKGKQPDYERLLRIAAYFGVSVDY 65 Query: 172 IYFG 175 + G Sbjct: 66 LLTG 69 >gi|301632617|ref|XP_002945378.1| PREDICTED: hypothetical protein LOC100487190 [Xenopus (Silurana) tropicalis] Length = 81 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G ++ +R +Q ++A+ + ++L E G S S+R + L ++ Sbjct: 7 QALGQALRKLRTERGWSQSDLALRVGMDRNYLSLIELGRNSPSVRMLMRLCMALDV 62 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + + A+G L+ +R ++G SQ + +GM + LS E GR P ++ ++ Sbjct: 1 MEDVVSQALGQALRKLRTERGWSQSDLALRVGMDRNYLSLIELGRNSPSVRMLMRLCMAL 60 Query: 166 KKHLDWIYFGDE 177 + E Sbjct: 61 DVRTADVLDDVE 72 >gi|296104791|ref|YP_003614937.1| hypothetical protein ECL_04459 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059250|gb|ADF63988.1| hypothetical protein ECL_04459 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 200 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +I Q V RI++ RK + E++ A+ + + E G + SI L Sbjct: 14 DIAQVSLAVANRIRNWRKEKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAAL 73 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDP 111 IS I + + + Sbjct: 74 GISVADIVNVSSEPLVHVIEEAAIPVLW 101 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ R+++ RK+K +S E + + L E+G P I K+ + Sbjct: 20 LAVANRIRNWRKEKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAALGISVAD 79 Query: 172 IYFGDEVIVPKSIKRA 187 I + I+ A Sbjct: 80 IVNVSSEPLVHVIEEA 95 >gi|325679705|ref|ZP_08159279.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108520|gb|EGC02762.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 73 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 RI+D+R+ N+ +Q+++A L+E G + + L + Y++S D++ Sbjct: 5 QRIRDLREDNDLSQQKVADYPEVTRQQYQLYECGKREMPMHLFIKLADFYKVSLDYL 61 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R++ +R+D +SQ + + YE G+ + K+ K LD+ Sbjct: 1 MYFYQRIRDLREDNDLSQQKVADYPEVTRQQYQLYECGKREMPMHLFIKLADFYKVSLDY 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|270291339|ref|ZP_06197561.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|304385092|ref|ZP_07367438.1| possible transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|270280185|gb|EFA26021.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|304329286|gb|EFL96506.1| possible transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 66 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R + +Q E+A + L E G + +++ + + + + D ++ Sbjct: 4 QRLKIARLEKDLSQAELANLIGVTRQTIGLIEAGNYNPTLKLCVAICQALDKTLDDLF 61 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK R +K +SQ E L+G+ T+ E G P +K I Q K LD + Sbjct: 1 MKNQRLKIARLEKDLSQAELANLIGVTRQTIGLIEAGNYNPTLKLCVAICQALDKTLDDL 60 Query: 173 YFGD 176 ++ D Sbjct: 61 FWED 64 >gi|212638622|ref|YP_002315142.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560102|gb|ACJ33157.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 74 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R D G++Q E KL+G+ ST + E G P + A++I K DW Sbjct: 1 MREWLKKKRLDTGLTQKEIAKLVGISRSTYAMIENGERNPSVSVAKRIADALK--FDWTI 58 Query: 174 FGDE 177 F D+ Sbjct: 59 FFDD 62 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +K R TQKE+A S + ENG + S+ A + + + FDW Sbjct: 5 LKKKRLDTGLTQKEIAKLVGISRSTYAMIENGERNPSVSVAKRIADALK--FDW 56 >gi|239828402|ref|YP_002951026.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239808695|gb|ACS25760.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 97 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q + +IK RK N +Q+E+A +S + E G+ S + + Sbjct: 21 QLEGTIAAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 A++K+ RK MSQ E +G+P ST+ E G T P ++ KI Q Sbjct: 28 AQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|167626085|ref|YP_001676379.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167356107|gb|ABZ78720.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 69 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + TQ ++A +N E G S+ A + +E+ + I++ Sbjct: 3 NRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYDPSLPLAFKVARLFEMPIEAIFED 62 Query: 94 EVI 96 E Sbjct: 63 ETE 65 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 35/67 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + + L + T++ E+G+ P + A K+ ++ + ++ I+ Sbjct: 1 MKNRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYDPSLPLAFKVARLFEMPIEAIF 60 Query: 174 FGDEVIV 180 + + Sbjct: 61 EDETELT 67 >gi|154498955|ref|ZP_02037333.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC 29799] gi|150271795|gb|EDM99021.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC 29799] Length = 115 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 30/96 (31%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + +GT I R+A TQ +A + V+ E G + + Sbjct: 4 KALEEIIGTNIAKYREAAGLTQAALAEIIGISTAFVSRVERGQKKMKVETLYATAKALNV 63 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 S + + + + ++ ++ + Sbjct: 64 SVNALLSTDSSAAQLANINQLLAGQSDEYLEGIERL 99 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 27/60 (45%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + R+ G++Q +++G+ + +S E+G+ +++ + ++ + D Sbjct: 13 NIAKYREAAGLTQAALAEIIGISTAFVSRVERGQKKMKVETLYATAKALNVSVNALLSTD 72 >gi|87122889|ref|ZP_01078757.1| putative transcriptional regulator, [Marinomonas sp. MED121] gi|86161840|gb|EAQ63137.1| putative transcriptional regulator, [Marinomonas sp. MED121] Length = 203 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K+IR + T +E++ S ++ EN S S L + + Sbjct: 23 ELGKRVKEIRLSKGWTLEEVSKRTGIARSTLSKIENDQVSPSFTIVQKLIQGLGMDLPQL 82 Query: 91 Y 91 + Sbjct: 83 F 83 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 ++P +G R+K IR KG + E K G+ STLS E + P +K+ Q Sbjct: 14 EPDNFVEPLELGKRVKEIRLSKGWTLEEVSKRTGIARSTLSKIENDQVSPSFTIVQKLIQ 73 Query: 164 VTKKHLDWIY 173 L ++ Sbjct: 74 GLGMDLPQLF 83 >gi|312130063|ref|YP_003997403.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311906609|gb|ADQ17050.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 255 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V IK +R TQ+++A AV +E + + L + + +S D + Sbjct: 4 VNENIKVLRNRMGLTQEKLAALLGINRKAVGSYEENRATPPLDKLNRLASLFGVSMDQLI 63 Query: 92 DGEVIDRRY 100 Sbjct: 64 HHRFSTESP 72 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +K +R G++Q + LLG+ + +YE+ R P + ++ + +D Sbjct: 1 MSYVNENIKVLRNRMGLTQEKLAALLGINRKAVGSYEENRATPPLDKLNRLASLFGVSMD 60 Query: 171 WIY 173 + Sbjct: 61 QLI 63 >gi|255035006|ref|YP_003085627.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254947762|gb|ACT92462.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 394 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 28/72 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V IK +R+ N TQ++ A S + +E + ++ + + +S D + Sbjct: 4 VSNNIKYLRRLNGLTQEQFARKIAIKRSLLGAYEEARANPNLTNLKNMAAAFGVSVDNLL 63 Query: 92 DGEVIDRRYEDV 103 ++ R Sbjct: 64 KNDLRKLRETPE 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +K +R+ G++Q +F + + + S L YE+ R P + + + +D Sbjct: 1 MSIVSNNIKYLRRLNGLTQEQFARKIAIKRSLLGAYEEARANPNLTNLKNMAAAFGVSVD 60 Query: 171 WIYFGD 176 + D Sbjct: 61 NLLKND 66 >gi|219852085|ref|YP_002466517.1| XRE family transcriptional regulator [Methanosphaerula palustris E1-9c] gi|219546344|gb|ACL16794.1| transcriptional regulator, XRE family [Methanosphaerula palustris E1-9c] Length = 69 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK R N+ TQ+ + + E G S+ A + + ++ + ++ Sbjct: 3 NRIKVFRAMNDLTQENLGRAIGVNRQTILAIEKGQYVPSLDLAFRIARYFSVNIEEMF 60 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R ++Q G+ +G+ T+ E+G+ +P + A +I + +++ ++ Sbjct: 1 MKNRIKVFRAMNDLTQENLGRAIGVNRQTILAIEKGQYVPSLDLAFRIARYFSVNIEEMF 60 >gi|167747600|ref|ZP_02419727.1| hypothetical protein ANACAC_02321 [Anaerostipes caccae DSM 14662] gi|167652962|gb|EDR97091.1| hypothetical protein ANACAC_02321 [Anaerostipes caccae DSM 14662] Length = 110 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 39/92 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +I++ RK T +++A + + + E+G S+ L L +E E S ++ Sbjct: 4 KRLGRKIREKRKQCGLTSQQLADLCHVHDGYIRQLESGKKVPSMPLLLSLCDELETSPNY 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + +L P + + Sbjct: 64 LLEYAEAGDDKQLLNRLYKLSPEQKNTMICML 95 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 31/76 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G +++ RK G++ + L + + + E G+ +P + + + Sbjct: 1 MNTKRLGRKIREKRKQCGLTSQQLADLCHVHDGYIRQLESGKKVPSMPLLLSLCDELETS 60 Query: 169 LDWIYFGDEVIVPKSI 184 +++ E K + Sbjct: 61 PNYLLEYAEAGDDKQL 76 >gi|149915319|ref|ZP_01903846.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149810608|gb|EDM70449.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 466 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 36/119 (30%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++ R+ TQK+ A +N EN S L L E+ + Sbjct: 9 GAKLRETRQRLGLTQKDFATKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGFDVTELST 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G+ + L +R + L + + +E+ + Sbjct: 69 GDAERMVSDMREALADPVFADDPPPLADLRLTASNAPALARAFLELHRAYRQTHERLAS 127 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ R+ G++Q +F LG+ L+ E + Q + Sbjct: 6 LYAGAKLRETRQRLGLTQKDFATKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGFDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSTGDAERMVSDMREA 81 >gi|262274204|ref|ZP_06052016.1| transcriptional regulator [Grimontia hollisae CIP 101886] gi|262222014|gb|EEY73327.1| transcriptional regulator [Grimontia hollisae CIP 101886] Length = 210 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+IR N T +E + S ++ EN S + + L I ++ Sbjct: 31 LGERLKEIRTNNGLTLEEASKLTGLARSTLSKIENEQISPTFQAMQKLAAGLNIDIPQLF 90 Query: 92 DGEVIDR 98 + Sbjct: 91 APPKQRQ 97 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK IR + G++ E KL G+ STLS E + P + +K+ + ++ Sbjct: 33 ERLKEIRTNNGLTLEEASKLTGLARSTLSKIENEQISPTFQAMQKLAAGLNIDIPQLF-- 90 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 P ++A G + ++ + K Sbjct: 91 ----APPKQRQATGRRDITRAGEGK 111 >gi|160934569|ref|ZP_02081955.1| hypothetical protein CLOLEP_03442 [Clostridium leptum DSM 753] gi|156866022|gb|EDO59394.1| hypothetical protein CLOLEP_03442 [Clostridium leptum DSM 753] Length = 121 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 43/101 (42%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 NK++ D A G +K+ RK KG+S+ + L + +++ E P ++ + Sbjct: 2 TMKQNKEKFDFKAFGQAIKAARKAKGISRNQLADTLNIAPRYIASIENSGQHPSLQILYE 61 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + +D +F + + +R S+KD K Sbjct: 62 LVTLLDVSVDQFFFPEREQEKSTRRRQLDTMLDGMSEKDLK 102 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 34/98 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + +K G IK RKA ++ ++A N + EN S++ L Sbjct: 7 KEKFDFKAFGQAIKAARKAKGISRNQLADTLNIAPRYIASIENSGQHPSLQILYELVTLL 66 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++S D + E + + LK + Sbjct: 67 DVSVDQFFFPEREQEKSTRRRQLDTMLDGMSEKDLKIL 104 >gi|148977326|ref|ZP_01813940.1| transcriptional regulator, XRE family protein [Vibrionales bacterium SWAT-3] gi|145963439|gb|EDK28703.1| transcriptional regulator, XRE family protein [Vibrionales bacterium SWAT-3] Length = 186 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 30/83 (36%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q VGT +K +R+ + + A ++ + E G S ++ + + +E+S Sbjct: 2 QTEIKVGTNLKRLRQEKGWSLDKAAKATGVSKAMLGQIELGESSPTVAKLWQIASGFEVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRL 109 F + + L Sbjct: 62 FSSFITESSNNELTSLFRDANEL 84 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +R++KG S + K G+ + L E G + P + +I + Sbjct: 10 NLKRLRQEKGWSLDKAAKATGVSKAMLGQIELGESSPTVAKLWQIASGFEVSFSSFITE 68 >gi|111020517|ref|YP_703489.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820047|gb|ABG95331.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 206 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G R+K R+A T ++A + ++ E S S+ + + I Sbjct: 16 PRIGPRLKAARQAQRLTLDDLAASCGITKGYLSKIERDHASASVATLVRICAALNIPVGS 75 Query: 90 IYD 92 +++ Sbjct: 76 LFE 78 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D IG RLK+ R+ + ++ + G+ LS E+ + +I Sbjct: 13 VDAPRIGPRLKAARQAQRLTLDDLAASCGITKGYLSKIERDHASASVATLVRICAALNIP 72 Query: 169 LDWIY 173 + ++ Sbjct: 73 VGSLF 77 >gi|126698979|ref|YP_001087876.1| putative phage regulatory protein [Clostridium difficile 630] gi|254974925|ref|ZP_05271397.1| putative phage regulatory protein [Clostridium difficile QCD-66c26] gi|255092314|ref|ZP_05321792.1| putative phage regulatory protein [Clostridium difficile CIP 107932] gi|255100395|ref|ZP_05329372.1| putative phage regulatory protein [Clostridium difficile QCD-63q42] gi|255306340|ref|ZP_05350511.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] gi|255314052|ref|ZP_05355635.1| putative phage regulatory protein [Clostridium difficile QCD-76w55] gi|255516732|ref|ZP_05384408.1| putative phage regulatory protein [Clostridium difficile QCD-97b34] gi|255649831|ref|ZP_05396733.1| putative phage regulatory protein [Clostridium difficile QCD-37x79] gi|260682989|ref|YP_003214274.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260686587|ref|YP_003217720.1| putative phage regulatory protein [Clostridium difficile R20291] gi|306519931|ref|ZP_07406278.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] gi|115250416|emb|CAJ68238.1| Transcriptional regulator, Phage-type [Clostridium difficile] gi|260209152|emb|CBA62363.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260212603|emb|CBE03613.1| putative phage regulatory protein [Clostridium difficile R20291] Length = 139 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI +RKA N Q E+ ++ FE + + + + +S DW+ Sbjct: 4 LGERIVYLRKAKNLKQYELEEMLGCD--NLSKFERNIRKPNYEILKSIAEIFNVSVDWLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYA--IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 +G+ + + + + + P +K + + ++ + K+ GM L YE+ Sbjct: 62 NGDNLSHKSDLICDSSSNYPLNSINSNEIKLLNNFRKLNDYDKAKIEGMIELKLHEYEKE 121 Query: 150 RTIPEIK 156 + + +I+ Sbjct: 122 KDLGKIE 128 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ +RK K + Q E ++LG N LS +E+ P + + I ++ +DW+ G Sbjct: 6 ERIVYLRKAKNLKQYELEEMLGCDN--LSKFERNIRKPNYEILKSIAEIFNVSVDWLLNG 63 Query: 176 DEVIVPKSI 184 D + + Sbjct: 64 DNLSHKSDL 72 >gi|70729282|ref|YP_259019.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68343581|gb|AAY91187.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 104 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 20/56 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G IK RK TQ E+ ++ FE G + S+ L + Sbjct: 6 LGAAIKRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLAEVLGVKL 61 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + ++GA +K RK G++Q E G+ G T+S +E G P ++ + +V Sbjct: 1 MQISSLGAAIKRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLAEVLGVK 60 Query: 169 LDWIY--FGDEV 178 L + GDE Sbjct: 61 LKAFFADLGDEE 72 >gi|49476099|ref|YP_034140.1| DNA-binding protein [Bartonella henselae str. Houston-1] gi|49238907|emb|CAF28202.1| DNA-binding protein [Bartonella henselae str. Houston-1] Length = 152 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ RK +QK++ + +E G+ + ++S + Sbjct: 47 VGKRIRYRRKMLGLSQKQLGHSLGVTFQQIQKYEKGINRVGAGRLQEIATLLDVSIS-FF 105 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++ + + K + LKS R+ K Q Sbjct: 106 YADISTKEHVSYPRNKGISNKEEDFLLKSFRELKPKKQKAI 146 Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 90 IYDGEVIDRRYEDVTNKK-RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + G V NK + ++G R++ RK G+SQ + G LG+ + YE+ Sbjct: 22 LMRGRSHPVGDFKVQNKNPHFNDISVGKRIRYRRKMLGLSQKQLGHSLGVTFQQIQKYEK 81 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKG 189 G ++I + + + Y S R KG Sbjct: 82 GINRVGAGRLQEIATLLDVSISFFYADISTKEHVSYPRNKG 122 >gi|42523852|ref|NP_969232.1| putative DNA-binding protein [Bdellovibrio bacteriovorus HD100] gi|39576059|emb|CAE80225.1| putative DNA-binding protein [Bdellovibrio bacteriovorus HD100] Length = 188 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++ +I ++RK TQ +A A S + E+GM + S+ + ++SF+ Sbjct: 9 QNLAAQITELRKKRQLTQAALAKLAGVPRSTLTNMESGMGNPSLVNLAKVCAALQVSFEE 68 Query: 90 IY 91 + Sbjct: 69 LL 70 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 13/90 (14%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 A++ +RK + ++Q KL G+P STL+N E G P + K+ + + + Sbjct: 13 AQITELRKKRQLTQAALAKLAGVPRSTLTNMESGMGNPSLVNLAKVCAALQVSFEELLAT 72 Query: 174 --------FGDEVIVPKSIKRAKGNQSSKK 195 DE+ K+AKGN + K Sbjct: 73 PRSQTKLIRKDEIPAN---KKAKGNVTVYK 99 >gi|323483951|ref|ZP_08089324.1| hypothetical protein HMPREF9474_01073 [Clostridium symbiosum WAL-14163] gi|323693453|ref|ZP_08107664.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323402667|gb|EGA94992.1| hypothetical protein HMPREF9474_01073 [Clostridium symbiosum WAL-14163] gi|323502508|gb|EGB18359.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 67 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I+D+R+ N+ TQ ++A ++ +E +R+ L L Y +S D+I Sbjct: 7 IRDLREDNDLTQSQVAEYLGTSQTMYARYEREASELPVRHLLKLCELYGVSADYIL 62 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ +R+D ++Q + + LG + + YE+ + ++ K+ ++ D+ Sbjct: 1 MKYVKIIRDLREDNDLTQSQVAEYLGTSQTMYARYEREASELPVRHLLKLCELYGVSADY 60 Query: 172 IY 173 I Sbjct: 61 IL 62 >gi|288956863|ref|YP_003447204.1| transcriptional regulator [Azospirillum sp. B510] gi|288909171|dbj|BAI70660.1| transcriptional regulator [Azospirillum sp. B510] Length = 221 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/107 (10%), Positives = 32/107 (29%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 L +++ + + TR++ +R T ++ + S ++L E G S + Sbjct: 14 LDHHSIFMENAANDIDSRLATRLRALRADRGLTLDSLSERSGVSRSMISLVERGESSPTA 73 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 L ++ ++ ++ + Sbjct: 74 SVLDRLAAGLGVTLATLFAEAERRDASPVARQSDQIAWTDPATGYRR 120 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 38/102 (37%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 W D ++D + N + RL+++R D+G++ + G+ S +S E+ Sbjct: 7 WSVDSNILDHHSIFMENAANDIDSRLATRLRALRADRGLTLDSLSERSGVSRSMISLVER 66 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGN 190 G + P ++ L ++ E + R Sbjct: 67 GESSPTASVLDRLAAGLGVTLATLFAEAERRDASPVARQSDQ 108 >gi|237797760|ref|ZP_04586221.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020610|gb|EGI00667.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 182 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F E VP++ Sbjct: 58 MVEFFSEETVPEN 70 >gi|229075117|ref|ZP_04208112.1| HTH-type transcriptional regulator ansR [Bacillus cereus Rock4-18] gi|229119543|ref|ZP_04248830.1| HTH-type transcriptional regulator ansR [Bacillus cereus Rock1-3] gi|228663890|gb|EEL19444.1| HTH-type transcriptional regulator ansR [Bacillus cereus Rock1-3] gi|228708001|gb|EEL60179.1| HTH-type transcriptional regulator ansR [Bacillus cereus Rock4-18] Length = 125 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ ++RK + +E A +S +ENG S++ + + ++ S D+I Sbjct: 3 ERLSELRKNQRWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK++ S E LG+ ST + YE G +P ++ KI + +D+I Sbjct: 1 MLERLSELRKNQRWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYIL 60 >gi|257053436|ref|YP_003131269.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256692199|gb|ACV12536.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 72 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 IK+ R+ N TQ E+A + E G + S+ A + E++ + ++D Sbjct: 7 IKERREDANLTQAELAEAVGVTRQTILYVEKGEYNPSLELAWRIAREFDTHVEEVFD 63 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K R+D ++Q E + +G+ T+ E+G P ++ A +I + H++ Sbjct: 1 MDFETTIKERREDANLTQAELAEAVGVTRQTILYVEKGEYNPSLELAWRIAREFDTHVEE 60 Query: 172 IYFGDEVIVP 181 ++ E Sbjct: 61 VFDLPETTHE 70 >gi|158320882|ref|YP_001513389.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141081|gb|ABW19393.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 125 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK NN TQ+E+A + +A+ +E G + N + D++ Sbjct: 9 ERLKELRKENNMTQQELADKLGLVRTAIANYETGRTVPDAETLNLIANILSTTTDYLLGR 68 Query: 94 EVIDRRYEDVTNKKRL 109 + ++ + + Sbjct: 69 ANYIPKEKNKPSSTDI 84 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D RLK +RK+ M+Q E LG+ + ++NYE GRT+P+ + I + Sbjct: 3 DKIKFKERLKELRKENNMTQQELADKLGLVRTAIANYETGRTVPDAETLNLIANILSTTT 62 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 D++ I + K + + S+ +K Sbjct: 63 DYLLGRANYIPKEKNKPSSTDIISEDIRK 91 >gi|159905237|ref|YP_001548899.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159886730|gb|ABX01667.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 182 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + + +K +RK + + ++ +S + E G + +I L + N + Sbjct: 1 MKDLNEVISKNLKTLRKRKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + E + + + + Sbjct: 61 VSFTSLLKNEKPEIDVIEFEDLSPV 85 >gi|27377584|ref|NP_769113.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27380303|ref|NP_771832.1| hypothetical protein blr5192 [Bradyrhizobium japonicum USDA 110] gi|27350728|dbj|BAC47738.1| bll2473 [Bradyrhizobium japonicum USDA 110] gi|27353467|dbj|BAC50457.1| blr5192 [Bradyrhizobium japonicum USDA 110] Length = 199 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 9/78 (11%), Positives = 28/78 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R +++ + ++ E G ++ L + + + D + Sbjct: 15 IGPKIRRLRLRKKLGLVQLSEHTGLSPAMLSKIERGHLFPTLPTLLRIALVFGVGLDHFF 74 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + V R+ Sbjct: 75 REDSDRPVHAVVRKADRI 92 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 L YAIG +++ +R K + ++ + G+ + LS E+G P + +I V Sbjct: 10 LKGYAIGPKIRRLRLRKKLGLVQLSEHTGLSPAMLSKIERGHLFPTLPTLLRIALVFGVG 69 Query: 169 LDWIYFGDEVIVPKSIKRA 187 LD + D ++ R Sbjct: 70 LDHFFREDSDRPVHAVVRK 88 >gi|88810779|ref|ZP_01126036.1| transcriptional regulator, XRE family protein [Nitrococcus mobilis Nb-231] gi|88792409|gb|EAR23519.1| transcriptional regulator, XRE family protein [Nitrococcus mobilis Nb-231] Length = 128 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 7/84 (8%) Query: 15 QEYTLIITPEIRQYWKDVGTR-------IKDIRKANNKTQKEMAIGANQLESAVNLFENG 67 + + E ++G I+ R+ TQ +A A + V+ E G Sbjct: 40 EVMAALKRGEEELIPAELGDALMQGESPIRVWRQYRGVTQAALANAAGITAAYVSQLEAG 99 Query: 68 MCSTSIRYALYLRNEYEISFDWIY 91 S+ + + + D + Sbjct: 100 KRQPSVEVLRAMARKLSVDIDDLL 123 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ R+ +G++Q G+ + +S E G+ P ++ R + + +D Sbjct: 62 MQGESPIRVWRQYRGVTQAALANAAGITAAYVSQLEAGKRQPSVEVLRAMARKLSVDIDD 121 Query: 172 IY 173 + Sbjct: 122 LL 123 >gi|323126526|gb|ADX23823.1| transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ RK TQK++A A + +E G+ S L + + + Sbjct: 5 EKLKERRKELKLTQKDIAEKLGISYQAYSAWERGVKEPSAEKVSQLEKLLNVPKGYFTEI 64 Query: 94 EVIDRRYEDVTNKKR 108 E++ ++ K Sbjct: 65 EIVRLYNTLSSSGKE 79 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK RK+ ++Q + + LG+ S +E+G P + +++++ + Sbjct: 1 MYQPEKLKERRKELKLTQKDIAEKLGISYQAYSAWERGVKEPSAEKVSQLEKLLNVPKGY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|320539393|ref|ZP_08039062.1| putative transcriptional regulator [Serratia symbiotica str. Tucson] gi|320030518|gb|EFW12528.1| putative transcriptional regulator [Serratia symbiotica str. Tucson] Length = 125 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V TR+ IRK+ TQ+ +A + + +E G S+ + ++ D + Sbjct: 14 VSTRLAYIRKSKGLTQQALADAIGLHVTQIKRYEAGTSQPSLEAIKKIAQTLRVTTDSLI 73 Query: 92 DGEVIDRRYEDVT-NKKRLDPYAIGAR--LKSIRKDKGMSQIEFGKL 135 E D+ + + A + +K + + GM + Sbjct: 74 FDEGELAPDADLALQFQAISGMAPEQQQVIKQLLE--GMIIKYEAER 118 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ RL IRK KG++Q +G+ + + YE G + P ++ +KI Q + D Sbjct: 12 MSVSTRLAYIRKSKGLTQQALADAIGLHVTQIKRYEAGTSQPSLEAIKKIAQTLRVTTDS 71 Query: 172 IYFGDEVIVP 181 + F + + P Sbjct: 72 LIFDEGELAP 81 >gi|319787830|ref|YP_004147305.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466342|gb|ADV28074.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 73 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V I+ +R TQ+ +A + E G + S+ A + + + + + Sbjct: 8 VANEIRRLRFERGEMTQQALADACGVTRQTIIALEAGRYAPSLELAFRIARAFGVGVEDV 67 Query: 91 YDGEVI 96 + Sbjct: 68 FHWREP 73 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R ++G M+Q G+ T+ E GR P ++ A +I + ++ ++ Sbjct: 10 NEIRRLRFERGEMTQQALADACGVTRQTIIALEAGRYAPSLELAFRIARAFGVGVEDVF 68 >gi|302380010|ref|ZP_07268489.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302312236|gb|EFK94238.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] Length = 174 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RK N +Q+++A + + V+ +E G+ + L S + Sbjct: 4 ENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVLLGE 63 Query: 94 EVIDRRYEDVTN 105 + + + ++ Sbjct: 64 NIEEIQQTELDK 75 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +KS+RK G+SQ + + + T+S +E+G ++P+ K+ ++ + + Sbjct: 1 MLNENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 G+ + + I++ + ++ S+K ++ Sbjct: 61 L-GENI---EEIQQTELDKISEKLEE 82 >gi|322434684|ref|YP_004216896.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX9] gi|321162411|gb|ADW68116.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX9] Length = 64 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +R +Q+++A +VN E G S+ A + + S + I+ Sbjct: 3 NRLRILRAERAWSQQDLADRLEVSRQSVNAIETGRYDPSLPLAFRIARLFGASIETIFLD 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R ++ SQ + L + +++ E GR P + A +I ++ ++ I+ Sbjct: 1 MNNRLRILRAERAWSQQDLADRLEVSRQSVNAIETGRYDPSLPLAFRIARLFGASIETIF 60 Query: 174 FGD 176 + Sbjct: 61 LDE 63 >gi|257440174|ref|ZP_05615929.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197526|gb|EEU95810.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 220 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K G + +RK+ TQ E+A + + AV+ +E G+ I L + ++ Sbjct: 4 KTFGAFLARMRKSQGLTQAELAQQLHVTDKAVSRWERGVGLPDINTLEPLADALGLTLAD 63 Query: 90 IYD 92 + Sbjct: 64 LMH 66 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D GA L +RK +G++Q E + L + + +S +E+G +P+I + Sbjct: 1 MDAKTFGAFLARMRKSQGLTQAELAQQLHVTDKAVSRWERGVGLPDINTLEPLADALGLT 60 Query: 169 LDWIY 173 L + Sbjct: 61 LADLM 65 >gi|229164001|ref|ZP_04291939.1| hypothetical protein bcere0009_47630 [Bacillus cereus R309803] gi|228619472|gb|EEK76360.1| hypothetical protein bcere0009_47630 [Bacillus cereus R309803] Length = 73 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++++R + +Q ++ ++L E G + SI +L + + + + + I+ Sbjct: 5 NRVRELRAKHRISQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIF 62 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ +R +SQ + GK +G T+S E+G P I + KI + ++ Sbjct: 1 MKLQNRVRELRAKHRISQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEE 60 Query: 172 IYF---GDEVIVP 181 I+ G+E Sbjct: 61 IFMLVEGEEDDEE 73 >gi|300768444|ref|ZP_07078344.1| HicB family toxin-antitoxin system [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493962|gb|EFK29130.1| HicB family toxin-antitoxin system [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 68 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+ IK IR TQ ++A A +S VN EN L ++ D + Sbjct: 2 IGSEIKKIRSKLGWTQAKLADAAGVSQSTVNTLENRTKHPDAVTLNLLAKAMGVTVDDLL 61 Query: 92 DGEV 95 + + Sbjct: 62 EPKE 65 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG+ +K IR G +Q + G+ ST++ E P+ + + +D + Sbjct: 1 MIGSEIKKIRSKLGWTQAKLADAAGVSQSTVNTLENRTKHPDAVTLNLLAKAMGVTVDDL 60 Query: 173 YFGDEV 178 EV Sbjct: 61 LEPKEV 66 >gi|171316971|ref|ZP_02906178.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171097895|gb|EDT42715.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 218 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++D+R T +A S ++L E S + L +S Sbjct: 13 INERIARRVRDLRTLRGYTLDALAARCGVSRSMISLIERASASPTAVVLDKLAAGLGVSL 72 Query: 88 DWIYDGEVIDRRYED 102 ++ G+ D Sbjct: 73 AGLFGGDRDDAPARP 87 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 4/98 (4%) Query: 102 DVTNKKRLDPYAIGARL----KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + + +D I R+ + +R +G + G+ S +S E+ P Sbjct: 1 MQESPRSVDDTGINERIARRVRDLRTLRGYTLDALAARCGVSRSMISLIERASASPTAVV 60 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 K+ L ++ GD P + Q+ + Sbjct: 61 LDKLAAGLGVSLAGLFGGDRDDAPARPLVRRAQQAEWR 98 >gi|153853770|ref|ZP_01995126.1| hypothetical protein DORLON_01117 [Dorea longicatena DSM 13814] gi|149753520|gb|EDM63451.1| hypothetical protein DORLON_01117 [Dorea longicatena DSM 13814] Length = 77 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RK Q + A ++ E G + S+ A + + + + I+ Sbjct: 9 NKVEQLRKERGLNQDDFAKMLRVSRQTISSIETGKYNPSLELAFAISDFFGKRIEEIFIY 68 Query: 94 E 94 E Sbjct: 69 E 69 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 37/64 (57%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +++ +RK++G++Q +F K+L + T+S+ E G+ P ++ A I K ++ I Sbjct: 6 FLKNKVEQLRKERGLNQDDFAKMLRVSRQTISSIETGKYNPSLELAFAISDFFGKRIEEI 65 Query: 173 YFGD 176 + + Sbjct: 66 FIYE 69 >gi|126464104|ref|YP_001045217.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332557508|ref|ZP_08411830.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|126105915|gb|ABN78445.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] gi|332275220|gb|EGJ20535.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 115 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 1/96 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++RKA N TQ+++A +S ++ E+G S R + E+ + + + Sbjct: 4 RLKELRKAKNLTQEQLAEMVGSSKSYISEIESGKKFPSGRLLKAFAHTMEVPVQALIEDD 63 Query: 95 VIDRRYED-VTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + L + A ++ +Q Sbjct: 64 QAGTDLMAHLEVMRDLPEHDQKAVIRHAIGLLEHAQ 99 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK K ++Q + +++G S +S E G+ P + + + + + D+ Sbjct: 5 LKELRKAKNLTQEQLAEMVGSSKSYISEIESGKKFPSGRLLKAFAHTMEVPVQALIEDDQ 64 >gi|152970466|ref|YP_001335575.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330003695|ref|ZP_08304714.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] gi|150955315|gb|ABR77345.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328536870|gb|EGF63173.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] Length = 193 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+ R++ + ++A A + ++ E G S + L + Sbjct: 5 EDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAFG 64 Query: 85 ISFDWIY 91 IS + Sbjct: 65 ISMSTLI 71 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R+ +G S + + G + + E+G + P ++ + + Sbjct: 14 ARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAFGISMSTLIAR 73 Query: 176 DEVIVPKSIKRA 187 E+ K ++ A Sbjct: 74 AEMQEGKLLRFA 85 >gi|159898574|ref|YP_001544821.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891613|gb|ABX04693.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 84 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 1/77 (1%) Query: 32 VGTRIKDIR-KANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+ +R +A+ TQ+ +A V E G S+ A + + + + Sbjct: 6 IHNRIRHLRVEAHGMTQQALADHVGITRQTVIALEQGRYYPSLELAFRIALLFGTPLEQV 65 Query: 91 YDGEVIDRRYEDVTNKK 107 + + ++ + Sbjct: 66 FQVDRTIEIHDAFIQPQ 82 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 109 LDPYAIGARLKSIR-KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + I R++ +R + GM+Q +G+ T+ EQGR P ++ A +I + Sbjct: 1 MAKLMIHNRIRHLRVEAHGMTQQALADHVGITRQTVIALEQGRYYPSLELAFRIALLFGT 60 Query: 168 HLDWIYFGDEVIV 180 L+ ++ D I Sbjct: 61 PLEQVFQVDRTIE 73 >gi|150389852|ref|YP_001319901.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949714|gb|ABR48242.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 64 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +R+K R + TQ+++A ++L E G + SI+ + + + + ++ Sbjct: 4 SRMKVARVEKDFTQEDLANIVGVTRQTISLIEGGKYNPSIKLCIEIAKALNKTLNDLF 61 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +R+K R +K +Q + ++G+ T+S E G+ P IK +I + K L+ + Sbjct: 1 MAVSRMKVARVEKDFTQEDLANIVGVTRQTISLIEGGKYNPSIKLCIEIAKALNKTLNDL 60 Query: 173 YFG 175 ++ Sbjct: 61 FWE 63 >gi|325291997|ref|YP_004277861.1| HTH XRE family transcriptional regulator [Agrobacterium sp. H13-3] gi|325059850|gb|ADY63541.1| putative HTH transcriptional regulator, XRE family [Agrobacterium sp. H13-3] Length = 471 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ IR TQ MA S +NL E +++ L L + Y++ D + Sbjct: 9 GPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYKVDLDDL 66 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + L + S L+ E+ + ++ K+ V K LD + Sbjct: 12 VRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYKVDLDDL 66 >gi|319744195|gb|EFV96562.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 129 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 33/75 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R+K +RK + TQKE+A + A +E G+ + + L + Sbjct: 8 LKDKTMEFSERLKTLRKQAHLTQKEIAEKLGISQPAYGDWERGVKMPTHENSKKLARLFN 67 Query: 85 ISFDWIYDGEVIDRR 99 I+ D + + +D Sbjct: 68 ITLDTLMGNQEVDEE 82 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK++RK ++Q E + LG+ ++E+G +P + ++K+ ++ LD Sbjct: 13 MEFSERLKTLRKQAHLTQKEIAEKLGISQPAYGDWERGVKMPTHENSKKLARLFNITLDT 72 Query: 172 IYFGDEVIVPKSIKRAKG 189 + EV + + Sbjct: 73 LMGNQEVDEEIDLSDVEM 90 >gi|296114146|ref|ZP_06832801.1| hypothetical protein GXY_00139 [Gluconacetobacter hansenii ATCC 23769] gi|295979222|gb|EFG85945.1| hypothetical protein GXY_00139 [Gluconacetobacter hansenii ATCC 23769] Length = 188 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G RI+ +RKA +QK A +AV +E G S + + + IS + Sbjct: 82 REIGQRIQLLRKAAGLSQKAFAEMLGMSRAAVCFWETGRSSHISEHVPRIAEIFGISEEV 141 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +G+ + ++T + +K R Sbjct: 142 FLNGQNNETIPIELTKDEE-------NIIKLYR 167 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R++ +RK G+SQ F ++LGM + + +E GR+ + +I ++ + Sbjct: 83 EIGQRIQLLRKAAGLSQKAFAEMLGMSRAAVCFWETGRSSHISEHVPRIAEIFGISEEVF 142 Query: 173 YFG-DEVIVPKSIKRAKGN 190 G + +P + + + N Sbjct: 143 LNGQNNETIPIELTKDEEN 161 >gi|325677942|ref|ZP_08157584.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324110496|gb|EGC04670.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 196 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI +R+ + ++++ V +ENG S+ + + + D + Sbjct: 137 IGKRIVRLREESGMSRQDFIKAMGVSAQTVYRWENGERIPSMATYMKIMQVLGVDIDKML 196 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+ +R++ GMS+ +F K +G+ T+ +E G IP + KI QV +D Sbjct: 136 MIGKRIVRLREESGMSRQDFIKAMGVSAQTVYRWENGERIPSMATYMKIMQVLGVDID 193 >gi|291037463|ref|ZP_06568427.1| hypothetical protein GxylN3_01335 [Gluconacetobacter xylinus NBRC 3288] Length = 260 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 62/208 (29%), Gaps = 60/208 (28%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q ++D+G I + R A + TQ +A A S + E G S+ L +EI Sbjct: 11 QLYRDIGEIIYNRRTALDWTQVHLAKLARLNVSVIRSIEAGR-PVSLETLSALLRVFEID 69 Query: 87 F----------------------------------DW---------IYDGEVIDRRYEDV 103 D+ I ++ Sbjct: 70 PRDILPQGAPEGTWFAHLDLAASATQLKKTMKQCSDYNLAIQKLRDIIGNISKTFNLPEI 129 Query: 104 TNKKRLDPYA----------------IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + +D Y+ G R++ R +G + + + ++LS E Sbjct: 130 PARLPIDHYSHSVAFTSGERQDLLEIFGRRIQIFRTLQGATASQIAHKSHVSLTSLSLIE 189 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIYFG 175 G P ++ +I + + ++ G Sbjct: 190 AGLRNPSLETVYRIAEGLSVSVYYLIPG 217 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 32/72 (44%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + E + + G RI+ R T ++A ++ ++++L E G+ + S+ + Sbjct: 146 SGERQDLLEIFGRRIQIFRTLQGATASQIAHKSHVSLTSLSLIEAGLRNPSLETVYRIAE 205 Query: 82 EYEISFDWIYDG 93 +S ++ G Sbjct: 206 GLSVSVYYLIPG 217 >gi|219852278|ref|YP_002466710.1| XRE family transcriptional regulator [Methanosphaerula palustris E1-9c] gi|219546537|gb|ACL16987.1| transcriptional regulator, XRE family [Methanosphaerula palustris E1-9c] Length = 72 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK R N+ TQ+ + + + E G S+ A + + ++ + ++ Sbjct: 3 NKIKVFRAMNDLTQENLGVAIGVNRQTILAIEKGKYVPSLDLAFKIARYFGVNIEDMFIY 62 Query: 94 EVID 97 E + Sbjct: 63 EEEN 66 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K R ++Q G +G+ T+ E+G+ +P + A KI + +++ ++ Sbjct: 1 MKNKIKVFRAMNDLTQENLGVAIGVNRQTILAIEKGKYVPSLDLAFKIARYFGVNIEDMF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEEE 65 >gi|163869006|ref|YP_001610236.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018683|emb|CAK02241.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 142 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ R+ +QK++ + +E G+ + + +IS + + Sbjct: 20 IGRKIRFRREMLKMSQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIADILDISI-FFF 78 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++ + + + ++ LKS R+ K Q Sbjct: 79 YADISTKEHVLLPYEEMTSNQEEHTLLKSFRELKPKQQKAI 119 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 1/100 (1%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 T + +IG +++ R+ MSQ + G LG+ + YE+G ++I Sbjct: 9 PTKNPHFNDISIGRKIRFRREMLKMSQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIA 68 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + + ++ D + + S+++ KS Sbjct: 69 DILDISI-FFFYADISTKEHVLLPYEEMTSNQEEHTLLKS 107 >gi|89890100|ref|ZP_01201611.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] gi|89518373|gb|EAS21029.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] Length = 193 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGT+IK+IR +Q+E+A + + EN + + +I+ + + Sbjct: 7 VGTKIKEIRLKKGMSQEELATQSQVSLRTIQRIENNENEPRGKTLQLICETCDINIEELL 66 Query: 92 DGEVIDRRYEDV 103 D + + Sbjct: 67 DYGKHEDHQFLM 78 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K IR KGMSQ E + T+ E P K + I + +++ Sbjct: 4 MNPVGTKIKEIRLKKGMSQEELATQSQVSLRTIQRIENNENEPRGKTLQLICETCDINIE 63 Query: 171 WIY 173 + Sbjct: 64 ELL 66 >gi|15887953|ref|NP_353634.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155555|gb|AAK86419.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 471 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ IR TQ MA S +NL E +++ L L + Y++ D + Sbjct: 9 GPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYKVDLDDL 66 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + L + S L+ E+ + ++ K+ V K LD + Sbjct: 12 VRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYKVDLDDL 66 >gi|315122130|ref|YP_004062619.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495532|gb|ADR52131.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 145 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 30/98 (30%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RI+ R +Q+++ V +E G+ + +I + Sbjct: 14 NVGKRIRLRRTILGMSQEKLGDSLGITFQQVQKYEKGVNRVGASRLQNISRALDIPISFF 73 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +D +D + L+ R + Sbjct: 74 FDDPPEVCSGALSEENNIMDFLSSSDGLQLNRHFTQIK 111 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ R GMSQ + G LG+ + YE+G + I + + + + Sbjct: 17 KRIRLRRTILGMSQEKLGDSLGITFQQVQKYEKGVNRVGASRLQNISRALDIPISFFF 74 >gi|310644825|ref|YP_003949584.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus polymyxa SC2] gi|309249776|gb|ADO59343.1| Predicted transcription factor,eukaryotic MBF1-like protein [Paenibacillus polymyxa SC2] Length = 114 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +GTRI+ IR A TQ+++A A+ + E G + SI + Sbjct: 1 MAELRKQIGTRIRAIRNAKGLTQQKLADIASLDYRYIGALERGERNFSIDTLEKVLTALN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +S + E E + + + A+ +RL Sbjct: 61 VSISELMFSEEHMTTDEMIRQEAIDEFVALTSRL 94 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +++IR KG++Q + + + + E+G I K+ + + F +E Sbjct: 12 IRAIRNAKGLTQQKLADIASLDYRYIGALERGERNFSIDTLEKVLTALNVSISELMFSEE 71 Query: 178 VIVPKSIKRAK 188 + + R + Sbjct: 72 HMTTDEMIRQE 82 >gi|239995180|ref|ZP_04715704.1| transcriptional regulator, HTH_3 family protein [Alteromonas macleodii ATCC 27126] Length = 187 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 11/121 (9%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + ++ +RKA + + A ++ + E G S +I + SF Sbjct: 13 RSIAHHLQSVRKARGLSLDKTAQLTGVSKAMLGQIERGESSPTIATLWKIATGLACSFSS 72 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL-----------KSIRKDKGMSQIEFGKLLGM 138 G+ + NK DP L + Q +G+ Sbjct: 73 FLSGDETAPTSQHADNKFANDPNVTIKTLFPFNSATQFEMFELCLTDFHEQHSSAHQIGV 132 Query: 139 P 139 Sbjct: 133 T 133 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 31/83 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+S+RK +G+S + +L G+ + L E+G + P I KI G Sbjct: 17 HHLQSVRKARGLSLDKTAQLTGVSKAMLGQIERGESSPTIATLWKIATGLACSFSSFLSG 76 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 DE K + K Sbjct: 77 DETAPTSQHADNKFANDPNVTIK 99 >gi|167618929|ref|ZP_02387560.1| DNA-binding protein [Burkholderia thailandensis Bt4] Length = 192 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E S + L N +S ++ Sbjct: 7 IARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLASLF 66 Query: 92 DGE 94 +G+ Sbjct: 67 EGD 69 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 35/90 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ G Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLASLFEG 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D P S + S ++S +P Sbjct: 69 DRAASPLSRAAEQPVWKDPASGYVRRSLSP 98 >gi|91780190|ref|YP_555397.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692850|gb|ABE36047.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 91 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ G ++ +R+ +Q+++A A S V E G SI L + +S + Sbjct: 6 RNFGAAVRRLRELQGWSQEQLAEYAGLNRSYVGEIERGSAIASIVTVDKLARAFGVSIEC 65 Query: 90 IYD 92 + Sbjct: 66 LLR 68 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 L GA ++ +R+ +G SQ + + G+ S + E+G I I K+ + Sbjct: 1 MTLIVRNFGAAVRRLRELQGWSQEQLAEYAGLNRSYVGEIERGSAIASIVTVDKLARAFG 60 Query: 167 KHLDWIY 173 ++ + Sbjct: 61 VSIECLL 67 >gi|266625750|ref|ZP_06118685.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288862345|gb|EFC94643.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 68 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + + RK +Q+ +A ++ +E I+ + L Y ++ D + Sbjct: 3 LGNNLFNARKGKGLSQEVVAEKLGVSRQTISKWETDETLPDIQQSKKLAVLYGLTLDELI 62 Query: 92 D 92 + Sbjct: 63 E 63 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 36/65 (55%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G L + RK KG+SQ + LG+ T+S +E T+P+I+ ++K+ + LD Sbjct: 1 MSLGNNLFNARKGKGLSQEVVAEKLGVSRQTISKWETDETLPDIQQSKKLAVLYGLTLDE 60 Query: 172 IYFGD 176 + D Sbjct: 61 LIEFD 65 >gi|240948598|ref|ZP_04752971.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240297106|gb|EER47677.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 114 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ + Q + +G I R+A TQ ++A AV+ E G S+ L L Sbjct: 1 MSDKTEQLVQSIGRAISKYRQAVGLTQAQLAEILGISNDAVSRMERGKSVPSVLRLLELS 60 Query: 81 NEYEISFDWIYD 92 + + Sbjct: 61 EIFGCEVADLLT 72 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 30/58 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + R+ G++Q + ++LG+ N +S E+G+++P + ++ ++ + + Sbjct: 16 ISKYRQAVGLTQAQLAEILGISNDAVSRMERGKSVPSVLRLLELSEIFGCEVADLLTE 73 >gi|229172431|ref|ZP_04299990.1| Transcriptional regulator, Xre [Bacillus cereus MM3] gi|228610902|gb|EEK68165.1| Transcriptional regulator, Xre [Bacillus cereus MM3] Length = 404 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ ++ ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIADKLGCEISFLL 62 Query: 92 DGEVID 97 + + ++ Sbjct: 63 EEDDVE 68 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIADKLGCEISFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + I+ K K +K D+ Sbjct: 65 DDVEIVALIQ--KMEPLIKANKCDE 87 >gi|164686153|ref|ZP_02210183.1| hypothetical protein CLOBAR_02591 [Clostridium bartlettii DSM 16795] gi|164601755|gb|EDQ95220.1| hypothetical protein CLOBAR_02591 [Clostridium bartlettii DSM 16795] Length = 183 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 32/89 (35%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG ++ +R + + E + ++ + E G S +I + + +++F Sbjct: 6 PKVGQNLRRLRNSLGLSLDEASKLTGVSKAMLGQIERGESSPTISTLWKISSGLKVNFTS 65 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + D E + + K + L Sbjct: 66 LLDDEQNELVLVKKDDIKAIKEEEGKMVL 94 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R G+S E KL G+ + L E+G + P I KI K + + Sbjct: 10 QNLRRLRNSLGLSLDEASKLTGVSKAMLGQIERGESSPTISTLWKISSGLKVNFTSLL-- 67 Query: 176 DEVIVPKSIKRAKGNQSSKKSK 197 D+ + + ++ K+ + Sbjct: 68 DDEQNELVLVKKDDIKAIKEEE 89 >gi|29171513|ref|NP_808697.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856006|gb|AAO59063.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] Length = 111 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK+ +Q ++A V+ +E G I + + + ++ + Sbjct: 2 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELL 61 Query: 92 DG 93 G Sbjct: 62 PG 63 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 44/87 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +GA++K++RK +SQ + +++G +S YE+G T+P I+ +I V + Sbjct: 1 MVGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGEL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 G + ++ + + + + ++ D Sbjct: 61 LPGGQDVLRTRLLSLRQEITERIAEVD 87 >gi|75908414|ref|YP_322710.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702139|gb|ABA21815.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 83 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I+ R+ + +Q+E+A A + ++ E G + S++ L IS ++ Sbjct: 12 FGKAIRRRRRELDYSQEELAEKAGLHRNYISSIETGTRNPSLKNIEKLAKALNISISDLF 71 Query: 92 DGEVIDRRYED 102 I+ + Sbjct: 72 TNYGIEAEDTE 82 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + Y G ++ R++ SQ E + G+ + +S+ E G P +K K+ Sbjct: 1 MRQNNINIEYRFGKAIRRRRRELDYSQEELAEKAGLHRNYISSIETGTRNPSLKNIEKLA 60 Query: 163 QVTKKHLDWIYF 174 + + ++ Sbjct: 61 KALNISISDLFT 72 >gi|304395793|ref|ZP_07377676.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304357087|gb|EFM21451.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 187 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 9/91 (9%), Positives = 30/91 (32%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + R+ ++R + E+A+ + ++ E G S + L Y ++ Sbjct: 8 QRLAVRLSELRLQRGWSLDELAVATGISRATLSRIERGETSPTAALLNRLCVAYGLTMSR 67 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + + + + + ++ Sbjct: 68 LLSEVEEESSLLVTSQHQPVWQDEASGFIRR 98 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L +R +G S E G+ +TLS E+G T P ++ + + E Sbjct: 14 LSELRLQRGWSLDELAVATGISRATLSRIERGETSPTAALLNRLCVAYGLTMSRLLSEVE 73 Query: 178 VIVPKSIKR 186 + Sbjct: 74 EESSLLVTS 82 >gi|257485767|ref|ZP_05639808.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130289|ref|ZP_07256279.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012863|gb|EGH92919.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 131 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK++ +Q ++A + +E G+ I + + + ++ + Sbjct: 18 VGAKIKALRKSSTLSQADLAEKIGCEAPLIGRYERGITLPGIEQLIRIATIFNVAPGELL 77 Query: 92 DGEVIDRRYEDVTNKKRL 109 G R ++ ++ L Sbjct: 78 PGGQDVLRTRLISLRQEL 95 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 41/88 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K++RK +SQ + + +G + YE+G T+P I+ +I + + G Sbjct: 20 AKIKALRKSSTLSQADLAEKIGCEAPLIGRYERGITLPGIEQLIRIATIFNVAPGELLPG 79 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + ++ + + S K ++ D S Sbjct: 80 GQDVLRTRLISLRQELSEKINQVDSPES 107 >gi|148258862|ref|YP_001243447.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411035|gb|ABQ39541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 112 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K+ RK +Q +A +++ E G S L Y++S W+ Sbjct: 2 QIAERLKEARKLAGLSQSHVAKMLGLHRPSISEMEAGNRRVSADELARLAETYDVSVAWL 61 Query: 91 YDGEVIDRRYEDVT 104 +D Sbjct: 62 LGEAPETLDAQDPR 75 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I RLK RK G+SQ K+LG+ ++S E G ++ + + W Sbjct: 1 MQIAERLKEARKLAGLSQSHVAKMLGLHRPSISEMEAGNRRVSADELARLAETYDVSVAW 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|21492894|ref|NP_659969.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|190894068|ref|YP_001984362.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|21467319|gb|AAM54982.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|190699729|gb|ACE93812.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 254 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + TS + E + + + + VG +I+ R +N + ++ G V +E+ Sbjct: 98 VRTSRPAQAEQSNVARELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYES 157 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 G S L N +I ++G + +D R+ Sbjct: 158 GKNRVSASMLYELANCLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRR 214 Score = 43.0 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ R +S + G +G+ + YE G+ ++ K + + G Sbjct: 125 QQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEG 184 >gi|86142246|ref|ZP_01060756.1| hypothetical protein MED217_11389 [Leeuwenhoekiella blandensis MED217] gi|85830998|gb|EAQ49455.1| hypothetical protein MED217_11389 [Leeuwenhoekiella blandensis MED217] Length = 251 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I+ IR +Q+ A + + +E G I + + N + I D + Sbjct: 4 FGKNIRKIRSVKTLSQQAFAELFDLKRGTLGAYEEGRSEPKIETIIKIANYFSIPIDDLL 63 Query: 92 DGE 94 E Sbjct: 64 TRE 66 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ IR K +SQ F +L + TL YE+GR+ P+I+ KI +D Sbjct: 1 MSFFGKNIRKIRSVKTLSQQAFAELFDLKRGTLGAYEEGRSEPKIETIIKIANYFSIPID 60 Query: 171 WIYFGD 176 + + Sbjct: 61 DLLTRE 66 >gi|332716375|ref|YP_004443841.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063060|gb|ADY66750.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 472 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 31/90 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ TQ + A S +N EN S + L ++++ + Sbjct: 8 IGRKVRGLRENARATQAQFAERLGISASYLNQIENNQRPVSASVLVTLVEKFQLDVTELA 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 GE K L+ + Sbjct: 68 TGENDRLVSAVREALKDPLFLNYEPGLQEL 97 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 36/81 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ IG +++ +R++ +Q +F + LG+ S L+ E + + + + Sbjct: 1 MAMEKLFIGRKVRGLRENARATQAQFAERLGISASYLNQIENNQRPVSASVLVTLVEKFQ 60 Query: 167 KHLDWIYFGDEVIVPKSIKRA 187 + + G+ + +++ A Sbjct: 61 LDVTELATGENDRLVSAVREA 81 >gi|301067371|ref|YP_003789394.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|300439778|gb|ADK19544.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 215 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ + ++Q + + L + T+S++E R+ P+I +I LD Sbjct: 1 MQFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + D+ + K Q +K Sbjct: 61 LLREDQTMTDHYDAIDKHVQRDQK 84 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K R+ TQ ++A + ++ +EN I + + + Y+IS D + Sbjct: 2 QFSDKLKLARQQQQLTQTQIAEQLHVSPKTISSWENARSFPDIGTLVRISDFYDISLDQL 61 Query: 91 YDGEVIDRRYED 102 + + D Sbjct: 62 LREDQTMTDHYD 73 >gi|256783783|ref|ZP_05522214.1| DNA-binding protein [Streptomyces lividans TK24] gi|289767665|ref|ZP_06527043.1| DNA-binding protein [Streptomyces lividans TK24] gi|289697864|gb|EFD65293.1| DNA-binding protein [Streptomyces lividans TK24] Length = 204 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V +++++R+ T + A A + ++ E G S+ L L Y + + Sbjct: 16 VAPQLRELRRRAALTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLSLARVYGTTVAELL 75 Query: 92 DGEVIDRR 99 DR Sbjct: 76 GESAADRD 83 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ +L+ +R+ ++ + G+ + LS E G+ P + + +V + + Sbjct: 15 AVAPQLRELRRRAALTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLSLARVYGTTVAEL 74 Query: 173 YFGDEVIVPKSIKRAKGNQSS 193 G+ ++ RA + + Sbjct: 75 L-GESAADRDAVVRAADMEPT 94 >gi|224823652|ref|ZP_03696761.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224604107|gb|EEG10281.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 132 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRIK R+ +Q +A A ++ V E G + + + + + +++ +W+ Sbjct: 22 LGTRIKAERERRGWSQAALAQRAGISQTTVADLERGTSAATTK-LIPIARALKVNPNWLE 80 Query: 92 DGEVIDRRYEDVT 104 G+ Sbjct: 81 TGQGPRDTIPSGD 93 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A+G R+K+ R+ +G SQ + G+ +T+++ E+G + K I + K + + Sbjct: 19 MSALGTRIKAERERRGWSQAALAQRAGISQTTVADLERGTSAATTK-LIPIARALKVNPN 77 Query: 171 WIYFG 175 W+ G Sbjct: 78 WLETG 82 >gi|182416559|ref|ZP_02947984.1| immunity repressor protein [Clostridium butyricum 5521] gi|237667186|ref|ZP_04527170.1| DNA-binding phage protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379631|gb|EDT77113.1| immunity repressor protein [Clostridium butyricum 5521] gi|237655534|gb|EEP53090.1| DNA-binding phage protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 118 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 39/88 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G +I++ + + +QK++A N E+ ++ + G S + ++ D Sbjct: 1 MKTIGRKIEERLQELDLSQKDLADKVNVTEATISRYITGTRSPRGEILSRIAVALGLTTD 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 ++ E ++ + + NKK D + Sbjct: 61 YLLGNESMENDIKLIVNKKYDDISKVFN 88 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 1/89 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +++ ++ +SQ + + + +T+S Y G P + +I D Sbjct: 1 MKTIGRKIEERLQELDLSQKDLADKVNVTEATISRYITGTRSPRGEILSRIAVALGLTTD 60 Query: 171 WIYFGDEVIVP-KSIKRAKGNQSSKKSKK 198 ++ + + K I K + SK K Sbjct: 61 YLLGNESMENDIKLIVNKKYDDISKVFNK 89 >gi|220916034|ref|YP_002491338.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953888|gb|ACL64272.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 260 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 29/72 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + P + VGT ++ +R + + ++++ + + + E G + +I + Sbjct: 69 VAPAGKDLTPVVGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKIS 128 Query: 81 NEYEISFDWIYD 92 + + F + Sbjct: 129 SALSVPFSALIT 140 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 L+ +R + +S + KL G+ + L E G++ P I KI + Sbjct: 83 NLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSALIT 140 >gi|138895235|ref|YP_001125688.1| PbsX family transcriptional regulator [Geobacillus thermodenitrificans NG80-2] gi|196248177|ref|ZP_03146878.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134266748|gb|ABO66943.1| Transcriptional regulator PBSX family [Geobacillus thermodenitrificans NG80-2] gi|196211902|gb|EDY06660.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 67 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R N TQ+++A ++L E G + +++ L + + D I+ Sbjct: 3 NNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIFWV 62 Query: 94 EV 95 E Sbjct: 63 EK 64 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R ++Q + + +G+ T+S E+G+ P +K +I K LD I+ Sbjct: 1 MRNNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIF 60 Query: 174 FGDE 177 + ++ Sbjct: 61 WVEK 64 >gi|126011086|ref|YP_001039911.1| putative immunity repressor protein [Streptococcus phage phi3396] gi|124389355|gb|ABN10797.1| putative immunity repressor protein [Streptococcus phage phi3396] Length = 112 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 8/116 (6%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK +R+A TQ A A+ ++ + +E+ + S++ + + + W+ + Sbjct: 4 RIKYLRQALGLTQSAFAAKAHVNKNMIANYESQNSNPSLKQIEKIALAFNVEPAWLAGWD 63 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + K DP A R E G+L+ S Y+ Sbjct: 64 TKPQIVVKEKIVKVQDPSA--------RIPNDWKNDECGRLIKWKESRKQLYKSCG 111 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +R+ G++Q F + + ++NYE + P +K KI W+ Sbjct: 5 IKYLRQALGLTQSAFAAKAHVNKNMIANYESQNSNPSLKQIEKIALAFNVEPAWL 59 >gi|16126569|ref|NP_421133.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235351|ref|YP_002517788.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] gi|13423855|gb|AAK24301.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964524|gb|ACL95880.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] Length = 135 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 27/84 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ RK +Q ++A + +E G S + + + Sbjct: 17 VGARLRIRRKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLLQAPVSYFF 76 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIG 115 +G D +R+ + Sbjct: 77 EGLEDTDGGVDDGFAQRMTEFVST 100 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GARL+ RK G+SQ + LG+ + YE+G ++ + + + Sbjct: 15 LYVGARLRIRRKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLLQAPVSY 74 Query: 172 IYFGDEVI 179 + G E Sbjct: 75 FFEGLEDT 82 >gi|21225063|ref|NP_630842.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|4539174|emb|CAB39703.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 204 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V +++++R+ T + A A + ++ E G S+ L L Y + + Sbjct: 16 VAPQLRELRRRAALTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLSLARVYGTTVAELL 75 Query: 92 DGEVIDRR 99 DR Sbjct: 76 GESAADRD 83 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ +L+ +R+ ++ + G+ + LS E G+ P + + +V + + Sbjct: 15 AVAPQLRELRRRAALTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLSLARVYGTTVAEL 74 Query: 173 YFGDEVIVPKSIKRAKGNQSS 193 G+ ++ RA + + Sbjct: 75 L-GESAADRDAVVRAADMEPT 94 >gi|115359612|ref|YP_776750.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170701460|ref|ZP_02892415.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171320762|ref|ZP_02909771.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|172064423|ref|YP_001812074.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115284900|gb|ABI90416.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] gi|170133622|gb|EDT01995.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171093979|gb|EDT39090.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171996940|gb|ACB67858.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 192 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 30/68 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T + A A + ++ E G+ S S+ + ++ + Sbjct: 16 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYFV 75 Query: 92 DGEVIDRR 99 D +R Sbjct: 76 DTPSEERS 83 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 N + D A+G++++++R+ + + G+ LS E+G P + I Sbjct: 4 PTENSRSADAAALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGI 63 Query: 162 KQVTKKHLDWIY 173 Q + + Sbjct: 64 AQALGVTVQYFV 75 >gi|134292421|ref|YP_001116157.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135578|gb|ABO56692.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 193 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 30/68 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T + A A + ++ E G+ S S+ + ++ + Sbjct: 17 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYFV 76 Query: 92 DGEVIDRR 99 D +R Sbjct: 77 DTPSEERS 84 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 101 EDVTNKKRLD-PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 N + +D P A+G++++++R+ + + G+ LS E+G P + Sbjct: 3 PPTENPRSVDAPAALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLA 62 Query: 160 KIKQVTKKHLDWIY 173 I Q + + Sbjct: 63 GIAQALGVTVQYFV 76 >gi|262372962|ref|ZP_06066241.1| LexA repressor [Acinetobacter junii SH205] gi|262312987|gb|EEY94072.1| LexA repressor [Acinetobacter junii SH205] Length = 224 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++ +G +K IRKA TQKE+A + +S ++ E G S L L N Sbjct: 1 MDKFMATLGDNLKSIRKAKKMTQKELAQKSGVKQSVISDLETGNAK-STGSILELANALG 59 Query: 85 ISFDWIYDG 93 ++ + + G Sbjct: 60 VTAEELKKG 68 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LKSIRK K M+Q E + G+ S +S+ E G ++ + + G Sbjct: 11 NLKSIRKAKKMTQKELAQKSGVKQSVISDLETGNAK-STGSILELANALGVTAEELKKG 68 >gi|300771128|ref|ZP_07081004.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761798|gb|EFK58618.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 205 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +RIK+IRK T +++A A + ++ EN S+ + + EI Sbjct: 20 KISSRIKEIRKGKGITIQDLADRAGVSKGLISQVENNRTVPSLLVLINIIGALEIDLTEF 79 Query: 91 YDGEVID 97 + G D Sbjct: 80 FKGFTSD 86 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 T K + I +R+K IRK KG++ + G+ +S E RT+P + I Sbjct: 11 TQMKDNTIFKISSRIKEIRKGKGITIQDLADRAGVSKGLISQVENNRTVPSLLVLINIIG 70 Query: 164 VTKKHLDWIYFG---DEVIVPKSIKRAKGNQSSKKS 196 + L + G D + P ++R + +S +K Sbjct: 71 ALEIDLTEFFKGFTSDGDLGPVIVRRKEQYESFEKE 106 >gi|228969513|ref|ZP_04130324.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] gi|228790215|gb|EEM37986.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K +RK TQ E+ ++A++ EN + + + D++ Sbjct: 5 GERVKTLRKMKGWTQDELGAAVGLKKAAISGIENNKRDRGEKSVSKFAEVFGCTADYLLG 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + D I +LK + Sbjct: 65 FSDDPALNSEQNLRLKKDFDEIYNKLKEL 93 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G R+K++RK KG +Q E G +G+ + +S E + K K +V D Sbjct: 1 MVMRGERVKTLRKMKGWTQDELGAAVGLKKAAISGIENNKRDRGEKSVSKFAEVFGCTAD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 ++ + S + + + + K Sbjct: 61 YLLGFSDDPALNSEQNLRLKKDFDEIYNKLKE 92 >gi|226329569|ref|ZP_03805087.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198] gi|225202755|gb|EEG85109.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198] Length = 161 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 34/86 (39%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ + +G ++K +R++ N + E++ + ++A++ E+G + I + Sbjct: 7 KKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIAIALGF 66 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDP 111 ++ + + D Sbjct: 67 PLGDLFSFTREEYPRLERHKPIVGDY 92 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K +R+ + +S E + G+ + LS E G + P I I L ++ Sbjct: 15 NKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIAIALGFPLGDLFSF 74 Query: 176 DEVIVPKSIK 185 P+ + Sbjct: 75 TREEYPRLER 84 >gi|161525013|ref|YP_001580025.1| putative phage repressor [Burkholderia multivorans ATCC 17616] gi|160342442|gb|ABX15528.1| putative phage repressor [Burkholderia multivorans ATCC 17616] Length = 270 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ + + R++D R+ + +Q ++A A ++ + E+G S ++ L + ++ Sbjct: 23 RHMRSLAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGS-KHLLSIARALGVN 81 Query: 87 FDWI 90 W+ Sbjct: 82 PAWL 85 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 + ++ RL+ R++K +SQ + G+ +T++N E GR K I + Sbjct: 18 DHHYNRHMRSLAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGS-KHLLSIAR 76 Query: 164 VTKKHLDWI 172 + W+ Sbjct: 77 ALGVNPAWL 85 >gi|127511903|ref|YP_001093100.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126637198|gb|ABO22841.1| transcriptional regulator, XRE family with cupin sensor [Shewanella loihica PV-4] Length = 182 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +K +RK +Q+E+A A S +++ E S S+ + + +S Sbjct: 2 DIGANLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDF 61 Query: 91 YDGEVIDRRYEDV 103 + E + V Sbjct: 62 FSIEESMPTEQKV 74 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA LK++RK KG+SQ E K G+ NST+S E+ P + +K+ L Sbjct: 1 MDIGANLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVD 60 Query: 172 IYFGDEVIVPKS 183 + +E + + Sbjct: 61 FFSIEESMPTEQ 72 >gi|110632671|ref|YP_672879.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283655|gb|ABG61714.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 474 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ IR + TQ MA G S +NL E + + L L + Y++ D + Sbjct: 10 GARVRRIRHSKGLTQTGMAEGLGISPSYLNLIERNQRPLTAQLILKLVSVYKVDPDEL 67 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + GAR++ IR KG++Q + LG+ S L+ E+ + + K+ V K Sbjct: 3 NVQKVFAGARVRRIRHSKGLTQTGMAEGLGISPSYLNLIERNQRPLTAQLILKLVSVYKV 62 Query: 168 HLDWI 172 D + Sbjct: 63 DPDEL 67 >gi|317056800|ref|YP_004105267.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449069|gb|ADU22633.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 296 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 2/106 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +++++RK +Q+ +A AV +E I + L + ++ + + Sbjct: 2 KFADKLRELRKQEKLSQEALAAKIGVSRQAVTKWETERGLPDIGNIMELSALFGVTVEEL 61 Query: 91 YDGEVID-RRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQIEFGK 134 E ++E + A R+ + K + + Sbjct: 62 LAAEETIAVKHEPFYESRTEYDIAGNKRIDMQLGGAKQILLKGTAE 107 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 32/71 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +L+ +RK + +SQ +G+ ++ +E R +P+I ++ + ++ Sbjct: 1 MKFADKLRELRKQEKLSQEALAAKIGVSRQAVTKWETERGLPDIGNIMELSALFGVTVEE 60 Query: 172 IYFGDEVIVPK 182 + +E I K Sbjct: 61 LLAAEETIAVK 71 >gi|297543548|ref|YP_003675850.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841323|gb|ADH59839.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 67 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K++R TQKE+A ++ E G + A+ + N + + D I+ Sbjct: 2 NKLKELRIKYKLTQKELAKKLGVTPDYISQIEGGRI-PGMETAIKIANFFNTTIDDIF 58 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +LK +R ++Q E K LG+ +S E G IP ++ A KI +D I+ Sbjct: 1 MNKLKELRIKYKLTQKELAKKLGVTPDYISQIE-GGRIPGMETAIKIANFFNTTIDDIF 58 >gi|237800519|ref|ZP_04588980.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023379|gb|EGI03436.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 115 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK++ +Q ++A + +E G+ I + + + ++ + Sbjct: 2 VGAKIKALRKSSTLSQADLAEKIGCDAPLIGRYERGINLPGIEQLIRIATVFNVAPGELL 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 G R ++ ++ L Sbjct: 62 PGGQDVLRTRLISLRQEL 79 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 42/91 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +GA++K++RK +SQ + + +G + YE+G +P I+ +I V + Sbjct: 1 MVGAKIKALRKSSTLSQADLAEKIGCDAPLIGRYERGINLPGIEQLIRIATVFNVAPGEL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 G + ++ + + S K ++ D S Sbjct: 61 LPGGQDVLRTRLISLRQELSEKINQVDSPES 91 >gi|228990754|ref|ZP_04150719.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] gi|228769280|gb|EEM17878.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] Length = 404 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 4/101 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ ++A G+ +S ++ ENG + S++ YL ++ E ++ Sbjct: 4 LGEKIKALRKEKRLTQTQLA-GSELTKSMLSQIENGKATPSMKTLQYLASQLECEASFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + + ++ + + R + Q E Sbjct: 63 EEDNEEVTKLIPKMEQAIKNNQFEE---AYRTLLPIVQKEL 100 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + + S LS E G+ P +K + + + ++ Sbjct: 6 EKIKALRKEKRLTQTQLAG-SELTKSMLSQIENGKATPSMKTLQYLASQLECEASFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D V K I + + + + ++ ++ P Sbjct: 65 DNEEVTKLIPKMEQAIKNNQFEEAYRTLLP 94 >gi|256823032|ref|YP_003146995.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796571|gb|ACV27227.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 70 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ RI+ R + +Q E+A ++ E G S AL + +++ + Sbjct: 2 HPELDNRIRVFRAEHRMSQGELAEAIGVSRKTISTIEVGKFVPSTIIALKIAEYFKVPVE 61 Query: 89 WIYDGEVI 96 ++ + Sbjct: 62 EVFILKSE 69 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ R + MSQ E + +G+ T+S E G+ +P A KI + K ++ ++ Sbjct: 7 NRIRVFRAEHRMSQGELAEAIGVSRKTISTIEVGKFVPSTIIALKIAEYFKVPVEEVF 64 >gi|210612788|ref|ZP_03289482.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|314950371|ref|ZP_07853647.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|317501730|ref|ZP_07959917.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319937809|ref|ZP_08012211.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] gi|210151402|gb|EEA82410.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|313643322|gb|EFS07902.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|316896852|gb|EFV18936.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319807039|gb|EFW03655.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] Length = 223 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 25 IRQYWKDV---GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + Y K + G I+ IRK Q+E+A +++ E G+ + + + Sbjct: 1 MEHYEKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMD 60 Query: 82 EYEISFDWIYDGE 94 ++ + + GE Sbjct: 61 VLGVTPNELLSGE 73 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++IRK +GM Q E +G+ +LS E+G P KI V + + G Sbjct: 13 ENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNELLSG 72 Query: 176 D 176 + Sbjct: 73 E 73 >gi|160942751|ref|ZP_02089992.1| hypothetical protein FAEPRAM212_00228 [Faecalibacterium prausnitzii M21/2] gi|158445916|gb|EDP22919.1| hypothetical protein FAEPRAM212_00228 [Faecalibacterium prausnitzii M21/2] Length = 220 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 1/90 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G + +RKA TQ E+A + + AV+ +E G+ I L + ++ Sbjct: 4 RTFGNYLSRMRKAQGLTQAELAEQLHVTDKAVSRWERGIGLPDINTLEPLADALGLTLAD 63 Query: 90 IY-DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + Sbjct: 64 LMHCRAPEEADAAPTIPLEDFFTMLRRQHI 93 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G L +RK +G++Q E + L + + +S +E+G +P+I + Sbjct: 1 MDARTFGNYLSRMRKAQGLTQAELAEQLHVTDKAVSRWERGIGLPDINTLEPLADALGLT 60 Query: 169 LDWIY 173 L + Sbjct: 61 LADLM 65 >gi|118587192|ref|ZP_01544620.1| transcriptional regulator, MerR family [Oenococcus oeni ATCC BAA-1163] gi|118432334|gb|EAV39072.1| transcriptional regulator, MerR family [Oenococcus oeni ATCC BAA-1163] Length = 191 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 33/87 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G + + R+ N T +E+A+ + S ++ E G + S+ + N + + Sbjct: 11 QLGKTLLNYRQQNKLTIRELAVQSGISASLISQIERGRANPSLSVLTIIANTLNVPLYTL 70 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 + +V +++ A Sbjct: 71 FINDVDTDSLISRKKDRKIIYRQDSAH 97 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 L +G L + R+ ++ E G+ S +S E+GR P + I Sbjct: 5 NNLQINQLGKTLLNYRQQNKLTIRELAVQSGISASLISQIERGRANPSLSVLTIIANTLN 64 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 L + F ++V I R K + + Sbjct: 65 VPL-YTLFINDVDTDSLISRKKDRKIIYR 92 >gi|331091384|ref|ZP_08340223.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404248|gb|EGG83795.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium 2_1_46FAA] Length = 63 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 I++ RK +Q E+A VN EN ++ A L E + + D ++ Sbjct: 5 IRNRRKELGLSQVELAKKCGVSRQTVNAIENNKYDPTLTLAFNLAKELKTTVDELFIHN 63 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +++ RK+ G+SQ+E K G+ T++ E + P + A + + K +D ++ Sbjct: 1 MENLIRNRRKELGLSQVELAKKCGVSRQTVNAIENNKYDPTLTLAFNLAKELKTTVDELF 60 >gi|317501524|ref|ZP_07959721.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897079|gb|EFV19153.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK Q+E+A +++ E G+ + + + E++ + + Sbjct: 11 LGENIQTIRKHRKMKQQELADAIGINMQSLSKIERGVNYPTFDTLEKIMDVLEVTPNELL 70 Query: 92 DGE 94 GE Sbjct: 71 SGE 73 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++IRK + M Q E +G+ +LS E+G P KI V + + Sbjct: 9 NFLGENIQTIRKHRKMKQQELADAIGINMQSLSKIERGVNYPTFDTLEKIMDVLEVTPNE 68 Query: 172 IYFGD 176 + G+ Sbjct: 69 LLSGE 73 >gi|302184902|ref|ZP_07261575.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] Length = 182 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F E VP++ Sbjct: 58 MVEFFSEETVPEN 70 >gi|289624831|ref|ZP_06457785.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647732|ref|ZP_06479075.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 199 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 19 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 66 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 7/90 (7%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 I R + LD +G RL+SIRK KG+SQ E K G+ NST+S E+ P Sbjct: 4 FISTRPDKTWGNIALD---VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPS 60 Query: 155 IKPARKIKQVT-KKHLDWIYFGDEVIVPKS 183 I RK V + + F E VP++ Sbjct: 61 ISSLRK---VLGGIPMSMVEFFSEESVPEN 87 >gi|282856547|ref|ZP_06265821.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] gi|282585613|gb|EFB90907.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] Length = 127 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +RKA TQ+++A + E+ S S++ L ++ + + Sbjct: 3 LGLRIRTLRKALKMTQQQLADATEVSRIYIQALESNRRSPSMKLLHRLADKLGVETSDLL 62 Query: 92 DGEVIDR 98 + D Sbjct: 63 EEFPRDN 69 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 20/56 (35%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++RK M+Q + + + E R P +K ++ + Sbjct: 7 IRTLRKALKMTQQQLADATEVSRIYIQALESNRRSPSMKLLHRLADKLGVETSDLL 62 >gi|238924521|ref|YP_002938037.1| hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656] gi|238876196|gb|ACR75903.1| Hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656] gi|291525206|emb|CBK90793.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291529334|emb|CBK94920.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 179 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+K++R TQ+E+A A + ++ E S S+ L + ++ Sbjct: 2 DIGHRMKELRIQYGLTQQELADRAELTKGFISQLERNQNSPSVGTLLDIIQCLGMTPAEF 61 Query: 91 YDGEVIDRRYEDVTNK 106 + ++ + Sbjct: 62 FTDSEPEQIVYKANDY 77 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R G++Q E + +S E+ + P + I Q Sbjct: 1 MDIGHRMKELRIQYGLTQQELADRAELTKGFISQLERNQNSPSVGTLLDIIQCLGMTPAE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + E P+ I K N +K ++K S Sbjct: 61 FFTDSE---PEQIV-YKANDYFEKIDEEKNSK 88 >gi|238894952|ref|YP_002919686.1| putative regulator [Klebsiella pneumoniae NTUH-K2044] gi|238547268|dbj|BAH63619.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 193 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+ R++ + ++A A + ++ E G S + L + Sbjct: 5 EDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAFG 64 Query: 85 ISFDWIY 91 IS + Sbjct: 65 ISMSTLI 71 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R+ +G S + + G + + E+G + P ++ + + Sbjct: 14 ARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAFGISMSTLIAR 73 Query: 176 DEVIVPKSIKRA 187 E+ K ++ A Sbjct: 74 AEMQEGKLLRFA 85 >gi|226360021|ref|YP_002777799.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226238506|dbj|BAH48854.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 196 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 2/95 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI+ +R A + +A S ++ E G ++ + + + D + Sbjct: 11 IRQRIRGLRVARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQLV 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 E +D + L R G Sbjct: 71 --ESVDDEDVVIRPMPEQTRGLTTWLLSRERALHG 103 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++ +R +G S + STLS E G + I + LD + Sbjct: 10 VIRQRIRGLRVARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQL 69 Query: 173 YF---GDEVIVPKSIKRAKG 189 ++V++ ++ +G Sbjct: 70 VESVDDEDVVIRPMPEQTRG 89 >gi|206578107|ref|YP_002238269.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|288935257|ref|YP_003439316.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|290509310|ref|ZP_06548681.1| DNA-binding protein [Klebsiella sp. 1_1_55] gi|206567165|gb|ACI08941.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|288889966|gb|ADC58284.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] gi|289778704|gb|EFD86701.1| DNA-binding protein [Klebsiella sp. 1_1_55] Length = 193 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+ R++ + ++A A + ++ E G S + L + Sbjct: 5 EDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAFG 64 Query: 85 ISFDWIY 91 IS + Sbjct: 65 ISMSTLI 71 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R+ +G S + + G + + E+G + P ++ + + Sbjct: 14 ARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAFGISMSTLIAR 73 Query: 176 DEVIVPKSIKRA 187 E+ K ++ A Sbjct: 74 AEMQEGKLLRFA 85 >gi|153941295|ref|YP_001390879.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152937191|gb|ABS42689.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318944|gb|ADF99321.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] Length = 370 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 34/90 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ+++A +AV+ +E+G I + + ++ D + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVTIDTLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ E + + + Sbjct: 66 NFKIELSDEEVMDIFNECEKLFSNGEIHKA 95 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + +RK+K ++Q + +G+ + +S +E G + P+I I Sbjct: 1 MEKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVT 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + + Sbjct: 61 IDTLLNFKIELSDEEV 76 >gi|116872697|ref|YP_849478.1| ans operon transcriptional repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741575|emb|CAK20699.1| Ans operon transcriptional repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 131 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 41/116 (35%), Gaps = 3/116 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLDMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 D++ + I + ++ + + +R + + GKLL + Sbjct: 61 DYLLGQQSIPTYAPSELHSEKDIAKRMIKLSEDLRYEDDLILN--GKLLDESAAHF 114 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLDMVTQIATLYDVSVDYLL- 64 Query: 175 GDEVIVPKSIKRAKGNQSSKKS 196 G + I + + K Sbjct: 65 GQQSIPTYAPSELHSEKDIAKR 86 >gi|229058432|ref|ZP_04196816.1| Transcriptional regulator, Xre [Bacillus cereus AH603] gi|228719941|gb|EEL71531.1| Transcriptional regulator, Xre [Bacillus cereus AH603] Length = 404 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ N+ ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIANKLGCETSFLL 62 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 63 EEDDAEIVELIQK 75 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIANKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+ + + I+ K Q K +K DK Sbjct: 65 DDAEIVELIQ--KMEQLIKANKCDK 87 >gi|16801490|ref|NP_471758.1| hypothetical protein lin2428 [Listeria innocua Clip11262] gi|289435611|ref|YP_003465483.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|16414950|emb|CAC97655.1| lin2428 [Listeria innocua Clip11262] gi|289171855|emb|CBH28401.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313617561|gb|EFR89887.1| DNA-binding protein [Listeria innocua FSL S4-378] gi|313622678|gb|EFR93041.1| DNA-binding protein [Listeria innocua FSL J1-023] gi|313632189|gb|EFR99260.1| DNA-binding protein [Listeria seeligeri FSL N1-067] gi|313636591|gb|EFS02297.1| DNA-binding protein [Listeria seeligeri FSL S4-171] Length = 115 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + G ++ +RK N TQK++A S ++ +EN I L + D++ Sbjct: 2 EFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFL 61 Query: 91 YDG 93 D Sbjct: 62 LDD 64 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L +RK ++Q + +G ST+S YE P I K+ ++ D+ Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|15675737|ref|NP_269911.1| putative transcription regulator [Streptococcus pyogenes M1 GAS] gi|19746847|ref|NP_607983.1| transcription regulator [Streptococcus pyogenes MGAS8232] gi|21911201|ref|NP_665469.1| putative transcription regulator [Streptococcus pyogenes MGAS315] gi|28896578|ref|NP_802928.1| transcription regulator [Streptococcus pyogenes SSI-1] gi|50915002|ref|YP_060974.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10394] gi|56808043|ref|ZP_00365843.1| COG1476: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] gi|71911461|ref|YP_283011.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|94991225|ref|YP_599325.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94993168|ref|YP_601267.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|139474424|ref|YP_001129140.1| DNA-binding protein [Streptococcus pyogenes str. Manfredo] gi|209560078|ref|YP_002286550.1| Putative transcription regulator [Streptococcus pyogenes NZ131] gi|306826624|ref|ZP_07459929.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|13622957|gb|AAK34632.1| putative transcription regulator [Streptococcus pyogenes M1 GAS] gi|19749087|gb|AAL98482.1| putative transcription regulator [Streptococcus pyogenes MGAS8232] gi|21905413|gb|AAM80272.1| putative transcription regulator [Streptococcus pyogenes MGAS315] gi|28811832|dbj|BAC64761.1| putative transcription regulator [Streptococcus pyogenes SSI-1] gi|50904076|gb|AAT87791.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10394] gi|71854243|gb|AAZ52266.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS5005] gi|94544733|gb|ABF34781.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10270] gi|94546676|gb|ABF36723.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS2096] gi|134272671|emb|CAM30942.1| putative DNA-binding protein [Streptococcus pyogenes str. Manfredo] gi|209541279|gb|ACI61855.1| Putative transcription regulator [Streptococcus pyogenes NZ131] gi|304431202|gb|EFM34206.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 68 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK+ R K +SQ L+G+ T++ E+G P I I +V K LD +++ + Sbjct: 6 LKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWEAD 65 Query: 178 V 178 Sbjct: 66 D 66 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 23/57 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R + +Q+ +A + E G + +I + + + + D ++ Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|326331111|ref|ZP_08197409.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325951152|gb|EGD43194.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 181 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 32/83 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G+R++++RKA T ++A + ++ E GM S+ + + Sbjct: 1 MQRLGSRVRELRKAQGMTLVQLAEATDLSHPFLSQIERGMARPSMSSLFRIAQTLGTTQQ 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDP 111 + V +R DP Sbjct: 61 GLLADSVESPSAGPAAVVRRSDP 83 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +G+R++ +RK +GM+ ++ + + + LS E+G P + +I Q Sbjct: 1 MQRLGSRVRELRKAQGMTLVQLAEATDLSHPFLSQIERGMARPSMSSLFRIAQTLGTT 58 >gi|313638389|gb|EFS03594.1| DNA binding helix-turn helix protein [Listeria seeligeri FSL S4-171] Length = 210 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +L+ R +Q + +G+ + +E+ IP + +I ++ + +D+ Sbjct: 1 MALHLKLREERIRNSWTQDTLAEKIGVSREMIGRWERQEAIPTLSNCIRICEIFEITVDY 60 Query: 172 IYFGDEVIVPKSIK 185 + D IK Sbjct: 61 LIKDDIDTKDNQIK 74 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 29/67 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++++ R N+ TQ +A + +E ++ + + +EI+ D++ + Sbjct: 6 KLREERIRNSWTQDTLAEKIGVSREMIGRWERQEAIPTLSNCIRICEIFEITVDYLIKDD 65 Query: 95 VIDRRYE 101 + + + Sbjct: 66 IDTKDNQ 72 >gi|302871197|ref|YP_003839833.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302574056|gb|ADL41847.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 140 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 40/88 (45%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 +I + R+ +++G +I +R+ +QKE+A A+ +E G I + L Sbjct: 1 MIALDERKRLEELGLKIGILREEKRISQKELAKRLEISPQALANYEKGKRMPGINILVRL 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKK 107 E ++S D++ I + + ++ Sbjct: 61 SEELDVSIDFLLGLTDIRKPRSRMVKEQ 88 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 +R++K +SQ E K L + L+NYE+G+ +P I ++ + +D++ ++ Sbjct: 20 LREEKRISQKELAKRLEISPQALANYEKGKRMPGINILVRLSEELDVSIDFLLGLTDIRK 79 Query: 181 PKSIKRAKGNQSSKKSKKDKKS 202 P+S + K +S ++K+ Sbjct: 80 PRS-RMVKEQLEMLESIQEKEE 100 >gi|253574698|ref|ZP_04852038.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845744|gb|EES73752.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 129 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 3/117 (2%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 LI K VG ++ RK TQ+++A S + E G + + Sbjct: 13 NLIREVASMDVAKQVGKNVRYYRKLKGLTQEQLAESTETYGSYIGRLERGEQNVQLETLH 72 Query: 78 YLRNEYEISFDWIYDGEVIDRRYEDVT---NKKRLDPYAIGARLKSIRKDKGMSQIE 131 + + +IS ++ D + + L + ++ R K M + + Sbjct: 73 KIADALQISVYALFRNPGYDELQDQTWIWQIVQLLQEQPAEEQARAYRVLKEMFRQK 129 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ RK KG++Q + + S + E+G +++ KI + + ++ Sbjct: 29 KNVRYYRKLKGLTQEQLAESTETYGSYIGRLERGEQNVQLETLHKIADALQISVYALF 86 >gi|149920973|ref|ZP_01909434.1| transcriptional regulator, XRE family with cupin sensor [Plesiocystis pacifica SIR-1] gi|149818245|gb|EDM77700.1| transcriptional regulator, XRE family with cupin sensor [Plesiocystis pacifica SIR-1] Length = 199 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 4/105 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R+A + +A + + ++ E + +++ A + S + Sbjct: 8 IGKNIRSRRQALGLSLDALAQASGVSSTMLSEVERARKNPTVKLAYQIARALGCSLTDLL 67 Query: 92 DG----EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + EV R + D + L+S D+ + + Sbjct: 68 EDSPAVEVSIVRADQRRTLVDPDTQVVRHGLRSSLLDRNLELAWY 112 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++S R+ G+S + G+ ++ LS E+ R P +K A +I + L + Sbjct: 10 KNIRSRRQALGLSLDALAQASGVSSTMLSEVERARKNPTVKLAYQIARALGCSLTDLL-E 68 Query: 176 DEVIVPKSIKRAKGNQS 192 D V SI RA ++ Sbjct: 69 DSPAVEVSIVRADQRRT 85 >gi|221068405|ref|ZP_03544510.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220713428|gb|EED68796.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 491 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 2/115 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R TQ +A S +N E ++ L + + Sbjct: 6 MGVRLRSLRAERGLTQVALAQALELSPSYLNQIEQDQRPLTVSVLLRIHRVLGVDIQQFS 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD-KGMSQIEFGKLLGMPNSTLSN 145 + E + + L +R+ + Q+ LL + L++ Sbjct: 66 EDEEARLLAQLRDAVAAMPLPEAAVPLPELREVAARLPQLAQA-LLAIHQRHLAD 119 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RL+S+R ++G++Q+ + L + S L+ EQ + + +I +V Sbjct: 1 MAKTFMGVRLRSLRAERGLTQVALAQALELSPSYLNQIEQDQRPLTVSVLLRIHRVLGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 + +E + ++ A Sbjct: 61 IQQFSEDEEARLLAQLRDA 79 >gi|160879107|ref|YP_001558075.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427773|gb|ABX41336.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 63 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R A + +Q+++A ++L E G + +I + + + D ++ Sbjct: 5 KLKSARVAMDLSQQQLADLVGVSRQTISLIEKGDYNPTINLCIAICKVLHKTLDELF 61 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LKS R +SQ + L+G+ T+S E+G P I I +V K LD +++ Sbjct: 6 LKSARVAMDLSQQQLADLVGVSRQTISLIEKGDYNPTINLCIAICKVLHKTLDELFW 62 >gi|88799578|ref|ZP_01115154.1| transcriptional regulator, Cro/CI family protein [Reinekea sp. MED297] gi|88777663|gb|EAR08862.1| transcriptional regulator, Cro/CI family protein [Reinekea sp. MED297] Length = 181 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 37/90 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R++++RK +Q+E+A S +++ E S S+ + + ++ Sbjct: 2 NVGKRLQEVRKKAGISQRELAKRVGVTNSTISMIEKNNVSPSVSSLQKVLSGMSMTLLEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ E D + ++++ Sbjct: 62 FEAEDNDIYVPQINYTDDDFQDVSSSQVRR 91 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +G RL+ +RK G+SQ E K +G+ NST+S E+ P + +K Sbjct: 1 MNVGKRLQEVRKKAGISQRELAKRVGVTNSTISMIEKNNVSPSVSSLQK 49 >gi|114049187|ref|YP_739737.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|113890629|gb|ABI44680.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] Length = 191 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 26/74 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +K +R + + A+ ++ + E G S +I + + + Sbjct: 1 MQTINSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFN 60 Query: 85 ISFDWIYDGEVIDR 98 IS + + Sbjct: 61 ISLSTFLEPTPESQ 74 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A LK +R KG S + G+ + + E+G + P I KI L Sbjct: 10 ATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 >gi|117918776|ref|YP_867968.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117611108|gb|ABK46562.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 191 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 26/74 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +K +R + + A+ ++ + E G S +I + + + Sbjct: 1 MQTINSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFN 60 Query: 85 ISFDWIYDGEVIDR 98 IS + + Sbjct: 61 ISLSTFLEPTPESQ 74 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A LK +R KG S + G+ + + E+G + P I KI L Sbjct: 10 ATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 >gi|134288210|ref|YP_001110373.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132860|gb|ABO59570.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 217 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 26/72 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K R + T + S ++ ENG+ S + + + +I + Sbjct: 15 ELGKRVKAARMHLDYTLDAASRVCGVSRSTLSKIENGVMSPTFDVLQRIVHGLKIDLGEL 74 Query: 91 YDGEVIDRRYED 102 + R Sbjct: 75 FGSAPRPRANGR 86 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 6/88 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K+ R + ++ G+ STLS E G P ++I K L ++ Sbjct: 18 KRVKAARMHLDYTLDAASRVCGVSRSTLSKIENGVMSPTFDVLQRIVHGLKIDLGELFG- 76 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 RA G ++ + + K S Sbjct: 77 -----SAPRPRANGRRAVTRKGEGKPHS 99 >gi|306835779|ref|ZP_07468779.1| XRE family transcriptional regulator [Corynebacterium accolens ATCC 49726] gi|304568330|gb|EFM43895.1| XRE family transcriptional regulator [Corynebacterium accolens ATCC 49726] Length = 69 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R+ +Q E+A + E G S S+ AL + +E + + I+ E Sbjct: 8 VRKWRRWREWSQGELAERVGVSRQTIANIERGNYSPSVHLALGICHELNKTVEEIFGAEQ 67 Query: 96 ID 97 D Sbjct: 68 HD 69 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ R+ + SQ E + +G+ T++N E+G P + A I K ++ I+ Sbjct: 5 PNMVRKWRRWREWSQGELAERVGVSRQTIANIERGNYSPSVHLALGICHELNKTVEEIFG 64 Query: 175 GDE 177 ++ Sbjct: 65 AEQ 67 >gi|293608302|ref|ZP_06690605.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828875|gb|EFF87237.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 197 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 2/98 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + ++++IR A T +A SA++L E G S + L N Sbjct: 1 MEDINIRIAQQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA--RLKS 120 + ++D + + + + + + ++ Sbjct: 61 VPLTQLFDSPPNTQSPQPMVRRTQQAEWKDPETGYIRR 98 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ IR +G + + S +S E+G P K+ L ++ Sbjct: 10 QQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLF 67 >gi|270262060|ref|ZP_06190332.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043936|gb|EFA17028.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 200 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 28/85 (32%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +I+ + V + IK RK T E++ A + + E G + SI + Sbjct: 14 DIQTVNEAVSSTIKQHRKDKKLTLDELSRKAGVSKGMLVEIEKGTANPSIAILCKIAAAL 73 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKR 108 +S I + Y Sbjct: 74 GLSVADIVNVTDAPSAYLIDKKDIP 98 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 28/76 (36%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ + +K RKDK ++ E + G+ L E+G P I KI + I Sbjct: 21 AVSSTIKQHRKDKKLTLDELSRKAGVSKGMLVEIEKGTANPSIAILCKIAAALGLSVADI 80 Query: 173 YFGDEVIVPKSIKRAK 188 + I + Sbjct: 81 VNVTDAPSAYLIDKKD 96 >gi|251772691|gb|EES53255.1| putative phage repressor [Leptospirillum ferrodiazotrophum] Length = 227 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G R+K+ R +Q ++ + + ++ EN S + L I+ + Sbjct: 1 MMTLGDRLKEARTKRKLSQTALSEKSGVPQQTIHAIENKKAK-STGHLFPLAKALHINPE 59 Query: 89 WIYDGEVIDRRYEDVTNK 106 W+ GE R + Sbjct: 60 WLSTGEGEMERKPLEESF 77 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RLK R + +SQ + G+P T+ E + + + + + Sbjct: 1 MMTLGDRLKEARTKRKLSQTALSEKSGVPQQTIHAIENKKAK-STGHLFPLAKALHINPE 59 Query: 171 WIYFGDEVIVPKSIKRA 187 W+ G+ + K ++ + Sbjct: 60 WLSTGEGEMERKPLEES 76 >gi|254454323|ref|ZP_05067760.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] gi|198268729|gb|EDY92999.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] Length = 148 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 32/107 (29%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + G R+ R TQKE+A S + +E + L +S Sbjct: 30 EETATFGDRLAAARDVAQLTQKELAQRVGIKVSTLRNWEEDLSEPRANRLSILSGILGVS 89 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 W+ E D D AI L+++R S Sbjct: 90 LRWLLTAEGEGLLAPDENAPIASDLSAILTELRAVRAQMKQSTERLA 136 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E N + G RL + R ++Q E + +G+ STL N+E+ + P Sbjct: 15 ETAMENETTTQNWYSEETATFGDRLAAARDVAQLTQKELAQRVGIKVSTLRNWEEDLSEP 74 Query: 154 EIKPARKIKQVTKKHLDWIYF--GDEVIVPKS 183 + + L W+ G+ ++ P Sbjct: 75 RANRLSILSGILGVSLRWLLTAEGEGLLAPDE 106 >gi|16800303|ref|NP_470571.1| hypothetical protein lin1234 [Listeria innocua Clip11262] gi|16413708|emb|CAC96465.1| lin1234 [Listeria innocua Clip11262] Length = 142 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY-DG 93 RIK++RK + KTQ +MA ++ +E + N +++S D+++ Sbjct: 5 RIKELRKESKKTQADMAKILGVAKTTYASYEQSKRMPDAEIQNKIANYFDVSLDYLHGRS 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKS 120 + E T K+ +D LK Sbjct: 65 RHKNINAEGFTLKEEIDMKKRMDALKE 91 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +RK+ +Q + K+LG+ +T ++YEQ + +P+ + KI LD++ Sbjct: 6 IKELRKESKKTQADMAKILGVAKTTYASYEQSKRMPDAEIQNKIANYFDVSLDYL 60 >gi|16804446|ref|NP_465931.1| hypothetical protein lmo2408 [Listeria monocytogenes EGD-e] gi|224503444|ref|ZP_03671751.1| hypothetical protein LmonFR_13202 [Listeria monocytogenes FSL R2-561] gi|254831169|ref|ZP_05235824.1| hypothetical protein Lmon1_07403 [Listeria monocytogenes 10403S] gi|255018503|ref|ZP_05290629.1| hypothetical protein LmonF_13781 [Listeria monocytogenes FSL F2-515] gi|16411896|emb|CAD00486.1| lmo2408 [Listeria monocytogenes EGD-e] Length = 67 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +K IR+ TQ E+A + ++ E G + S+ +L + +++ + I++ E Sbjct: 7 VKIIREKKGITQNELAHSLDVSRQTIHAIEKGKYNPSLELSLKIAKFFDLPVEEIFNLE 65 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K IR+ KG++Q E L + T+ E+G+ P ++ + KI + ++ Sbjct: 1 MVVTNIVKIIREKKGITQNELAHSLDVSRQTIHAIEKGKYNPSLELSLKIAKFFDLPVEE 60 Query: 172 IY 173 I+ Sbjct: 61 IF 62 >gi|167036464|ref|YP_001664042.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114890|ref|YP_004185049.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855298|gb|ABY93706.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927981|gb|ADV78666.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 69 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K++R TQKE+A ++ E G + A+ + N + + D I+ Sbjct: 2 NKLKELRIKYKLTQKELAKNLGVTPDYISQIERGRI-PGMETAIKIANFFNTTVDEIFLA 60 Query: 94 EVIDRRYED 102 + + Sbjct: 61 NNRTKSSQQ 69 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +LK +R ++Q E K LG+ +S E+GR IP ++ A KI +D I+ Sbjct: 1 MNKLKELRIKYKLTQKELAKNLGVTPDYISQIERGR-IPGMETAIKIANFFNTTVDEIF 58 >gi|319791791|ref|YP_004153431.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315594254|gb|ADU35320.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 206 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 26/75 (34%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P + R++D+R + + + +A S ++L E G S + L Sbjct: 13 APATTSLNDRIAQRVRDLRASRSLSLDALATHCGVSRSMISLIERGESSPTAVLLEKLAT 72 Query: 82 EYEISFDWIYDGEVI 96 + ++D Sbjct: 73 GLGVPLASLFDDAEP 87 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R + +S G+ S +S E+G + P K+ L ++ Sbjct: 25 QRVRDLRASRSLSLDALATHCGVSRSMISLIERGESSPTAVLLEKLATGLGVPLASLFDD 84 Query: 176 DEVIVPKSIKRAK 188 E + + A Sbjct: 85 AEPVASPVSRLAD 97 >gi|312864429|ref|ZP_07724662.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100150|gb|EFQ58361.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 75 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK IR+ G++Q E + +G+ T+ + E R P ++ A KI QV K ++ I+ + Sbjct: 11 NLKEIREKGGLTQQELAEAVGVRRETILHLENNRYNPSLELALKIAQVFDKSVEEIFRLN 70 Query: 177 E 177 E Sbjct: 71 E 71 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K+IR+ TQ+E+A + EN + S+ AL + ++ S + I+ Sbjct: 11 NLKEIREKGGLTQQELAEAVGVRRETILHLENNRYNPSLELALKIAQVFDKSVEEIFR 68 >gi|288923632|ref|ZP_06417738.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288345013|gb|EFC79436.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 284 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + KDVG I++ R + +++A A ++ E G+ S + IS Sbjct: 5 HVKDVGDFIREQRHGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISA 64 Query: 88 DWIY 91 + +Y Sbjct: 65 EVLY 68 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G ++ R +S + + G+ N LS E+G P + ++I + + Sbjct: 4 IHVKDVGDFIREQRHGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRIS 63 Query: 169 LDWIY 173 + +Y Sbjct: 64 AEVLY 68 >gi|171320839|ref|ZP_02909842.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171093917|gb|EDT39035.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 183 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R++ +R + +Q+E+A A ++L E G S S+ L +S Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRR 99 + E+++ R Sbjct: 64 FTFELVESR 72 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 7 ERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 66 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 67 ELVESRSIVSRRDE 80 >gi|161526154|ref|YP_001581166.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189349130|ref|YP_001944758.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343583|gb|ABX16669.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189333152|dbj|BAG42222.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 183 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R++ +R + +Q+E+A A ++L E G S S+ L +S Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRR 99 + E+++ R Sbjct: 64 FTFELVESR 72 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 7 ERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 66 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 67 ELVESRSVVSRRDE 80 >gi|78067809|ref|YP_370578.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968554|gb|ABB09934.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 183 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R++ +R + +Q+E+A A ++L E G S S+ L +S Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRR 99 + E+++ R Sbjct: 64 FTFELVESR 72 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 7 ERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 66 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 67 ELVESRTVVSRRDE 80 >gi|115353089|ref|YP_774928.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170702522|ref|ZP_02893400.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|172061941|ref|YP_001809593.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115283077|gb|ABI88594.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] gi|170132560|gb|EDT01010.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171994458|gb|ACB65377.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 183 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R++ +R + +Q+E+A A ++L E G S S+ L +S Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRR 99 + E+++ R Sbjct: 64 FTFELVESR 72 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 7 ERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 66 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 67 ELVESRSVVSRRDE 80 >gi|107023923|ref|YP_622250.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691009|ref|YP_836632.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170734344|ref|YP_001766291.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105894112|gb|ABF77277.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116649098|gb|ABK09739.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169817586|gb|ACA92169.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 183 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R++ +R + +Q+E+A A ++L E G S S+ L +S Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRR 99 + E+++ R Sbjct: 64 FTFELVESR 72 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 7 ERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 66 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 67 ELVESRAVVSRRDE 80 >gi|299144547|ref|ZP_07037626.1| HTH DNA-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517635|gb|EFI41375.1| HTH DNA-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 73 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ ++RK N TQ+E A ++ ENG + S+ A + + + + ++ Sbjct: 5 NKLDELRKINGLTQEEFAKELRVSRQTISAIENGKYNPSLDLAFEIALYFNKTIEEVFT 63 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +RK G++Q EF K L + T+S E G+ P + A +I K ++ ++ Sbjct: 9 ELRKINGLTQEEFAKELRVSRQTISAIENGKYNPSLDLAFEIALYFNKTIEEVFT 63 >gi|256394949|ref|YP_003116513.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361175|gb|ACU74672.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 193 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 2/93 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R A T +A + S ++ E G ++ + + + D + Sbjct: 13 RRIRTLRLARGWTLDSLASRCDLSPSNLSRIETGQRRIALDQLVPIARALGTTLDQLV-- 70 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 E D + + P L + R G Sbjct: 71 EPGDDTGVVIRPEPVQTPGMTTWLLSNERSPNG 103 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 +T + +D ++++R +G + + S LS E G+ + I Sbjct: 1 MTQEPDMDALVRRR-IRTLRLARGWTLDSLASRCDLSPSNLSRIETGQRRIALDQLVPIA 59 Query: 163 QVTKKHLDWIYF-GDE---VIVPKSIK 185 + LD + GD+ VI P+ ++ Sbjct: 60 RALGTTLDQLVEPGDDTGVVIRPEPVQ 86 >gi|229122159|ref|ZP_04251374.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|228661285|gb|EEL16910.1| Transcriptional regulator [Bacillus cereus 95/8201] Length = 116 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 2/108 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ RIK IR + Q++ + + V+ FENG S + + + +++ Sbjct: 2 DMKDRIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFSVPVNYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI-EFGKLLG 137 GE + ++ +K + A L ++D + Q+ + L Sbjct: 62 -YGENNEVNLDENKYEKFKEIMAWLEPLPKDKEDMALDQMLAIAQALN 108 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K IR + M+Q +FGK + + T+S +E G+ P + KI + +++ Sbjct: 1 MDMKDRIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFSVPVNY 60 Query: 172 IYFGDEVI 179 +Y + + Sbjct: 61 LYGENNEV 68 >gi|50954237|ref|YP_061525.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950719|gb|AAT88420.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 484 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R T E+ A+ S ++L +NG + + + + Sbjct: 15 LGHRIRHFRTQRGLTLDELGGAASVAASQLSLIDNGKREPRVTLLAGIAAALGVPVSDLL 74 Query: 92 DGEVIDRR 99 E D R Sbjct: 75 SAEPPDER 82 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G R++ R +G++ E G + S LS + G+ P + I + Sbjct: 11 DTATLGHRIRHFRTQRGLTLDELGGAASVAASQLSLIDNGKREPRVTLLAGIAAALGVPV 70 Query: 170 DWIYFGD--EVIVPKSIKRAKGNQSS 193 + + + I+ A+ +S+ Sbjct: 71 SDLLSAEPPDERAALEIELARAERST 96 >gi|30262414|ref|NP_844791.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527707|ref|YP_019056.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49185259|ref|YP_028511.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118477813|ref|YP_894964.1| MerR family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165870483|ref|ZP_02215137.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633086|ref|ZP_02391412.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167639621|ref|ZP_02397891.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170687038|ref|ZP_02878257.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170706715|ref|ZP_02897174.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649613|ref|ZP_02932615.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565573|ref|ZP_03018493.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033861|ref|ZP_03101272.1| DNA-binding protein [Bacillus cereus W] gi|196043683|ref|ZP_03110921.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218903548|ref|YP_002451382.1| DNA-binding protein [Bacillus cereus AH820] gi|225864377|ref|YP_002749755.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227814774|ref|YP_002814783.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228927463|ref|ZP_04090518.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933732|ref|ZP_04096579.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946017|ref|ZP_04108357.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228985502|ref|ZP_04145659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229091390|ref|ZP_04222604.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-42] gi|229121957|ref|ZP_04251175.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|229155991|ref|ZP_04284092.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 4342] gi|229184624|ref|ZP_04311825.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|229196624|ref|ZP_04323368.1| Transcriptional regulator, XRE [Bacillus cereus m1293] gi|229604374|ref|YP_002866746.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254684990|ref|ZP_05148850.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254722396|ref|ZP_05184184.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254737437|ref|ZP_05195141.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743378|ref|ZP_05201063.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751753|ref|ZP_05203790.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254760271|ref|ZP_05212295.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257045|gb|AAP26277.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502855|gb|AAT31531.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179186|gb|AAT54562.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118417038|gb|ABK85457.1| transcriptional regulator, MerR family [Bacillus thuringiensis str. Al Hakam] gi|164713638|gb|EDR19161.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167512330|gb|EDR87706.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531898|gb|EDR94563.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128446|gb|EDS97314.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669089|gb|EDT19833.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084687|gb|EDT69745.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190563600|gb|EDV17565.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195993541|gb|EDX57498.1| DNA-binding protein [Bacillus cereus W] gi|196025992|gb|EDX64661.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218536010|gb|ACK88408.1| DNA-binding protein [Bacillus cereus AH820] gi|225787172|gb|ACO27389.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227004110|gb|ACP13853.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228586980|gb|EEK45054.1| Transcriptional regulator, XRE [Bacillus cereus m1293] gi|228598837|gb|EEK56456.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|228627598|gb|EEK84324.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 4342] gi|228661485|gb|EEL17107.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|228691932|gb|EEL45675.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-42] gi|228774267|gb|EEM22676.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228813663|gb|EEM59944.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825965|gb|EEM71751.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832182|gb|EEM77764.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229268782|gb|ACQ50419.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 186 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 28/87 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RK N T +E A A S ++ E G + S+ + + ++ Sbjct: 6 LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E+ ++ + Sbjct: 66 INEIDTDSLISKKKDRKKVYRENSDHI 92 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ +E+ Sbjct: 13 YRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLFI-NEIDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENSD 90 >gi|25026941|ref|NP_736995.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259508572|ref|ZP_05751472.1| DNA-binding protein [Corynebacterium efficiens YS-314] gi|23492221|dbj|BAC17195.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259163839|gb|EEW48393.1| DNA-binding protein [Corynebacterium efficiens YS-314] Length = 474 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R+ + +Q +A S VN E+ + ++ L + + + D + Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D R LD + + Sbjct: 64 FSRDDDSRLLAEVQDVMLDREINPSSI 90 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +R+++ +SQ LG+ S ++ E + +I + Sbjct: 1 MGKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + D+ + ++ Sbjct: 61 ATFFSRDDDSRLLAEVQD 78 >gi|255324440|ref|ZP_05365557.1| transcriptional regulator, XRE family [Corynebacterium tuberculostearicum SK141] gi|255298346|gb|EET77646.1| transcriptional regulator, XRE family [Corynebacterium tuberculostearicum SK141] Length = 69 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R+ +Q E+A A + E G S S+ AL + +E + + I+ E Sbjct: 8 VRKWRRWLELSQAELADKAGVSRQTIANIERGNYSPSVHLALDICHELGKTVEEIFGAEQ 67 Query: 96 ID 97 D Sbjct: 68 HD 69 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ R+ +SQ E G+ T++N E+G P + A I K ++ I+ Sbjct: 5 PNMVRKWRRWLELSQAELADKAGVSRQTIANIERGNYSPSVHLALDICHELGKTVEEIFG 64 Query: 175 GDE 177 ++ Sbjct: 65 AEQ 67 >gi|311741369|ref|ZP_07715193.1| XRE family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303539|gb|EFQ79618.1| XRE family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 64 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+IR++ +Q+ +A V E G S+ A + + + I+ Sbjct: 3 NRLKEIRESKGLSQQGLATELGVSRQTVISIEKGRYDPSLPLAFQIARHFSCRIEDIFIP 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK IR+ KG+SQ LG+ T+ + E+GR P + A +I + ++ I+ Sbjct: 3 NRLKEIRESKGLSQQGLATELGVSRQTVISIEKGRYDPSLPLAFQIARHFSCRIEDIFIP 62 Query: 176 D 176 + Sbjct: 63 E 63 >gi|226361258|ref|YP_002779036.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226239743|dbj|BAH50091.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 470 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VGTR++ +R +Q +A S +N E+ + ++ L + + + Sbjct: 6 VGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDT 61 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RL+ +R ++G+SQ K L + S L+ E + +I +V Sbjct: 1 MSKTFVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVD 60 Query: 169 LDWIYFGDEV 178 + D+ Sbjct: 61 TTFFSSQDDT 70 >gi|224541245|ref|ZP_03681784.1| hypothetical protein CATMIT_00405 [Catenibacterium mitsuokai DSM 15897] gi|224525890|gb|EEF94995.1| hypothetical protein CATMIT_00405 [Catenibacterium mitsuokai DSM 15897] Length = 281 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 27/84 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK R N +Q E+ AV +E I L + IS D + Sbjct: 3 LGQTIKYYRTKFNLSQSELGDQIGVSRQAVTKWETDTGMPDINNIKSLAKLFHISIDTLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIG 115 + + + + +D Sbjct: 63 SSDHHVQSLHESKIEYDIDMLKDF 86 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +K R +SQ E G +G+ ++ +E +P+I + + ++ +D Sbjct: 1 MTLGQTIKYYRTKFNLSQSELGDQIGVSRQAVTKWETDTGMPDINNIKSLAKLFHISIDT 60 Query: 172 IYFGD 176 + D Sbjct: 61 LLSSD 65 >gi|153812908|ref|ZP_01965576.1| hypothetical protein RUMOBE_03315 [Ruminococcus obeum ATCC 29174] gi|149830986|gb|EDM86076.1| hypothetical protein RUMOBE_03315 [Ruminococcus obeum ATCC 29174] Length = 119 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+++R+ TQ ++I + ++ +E S++ + L+N + +S D+I G Sbjct: 11 NRIRELREEKKITQIRLSIELEVSQETISAYEMEKYYPSVKSLIKLQNIFGVSIDYIL-G 69 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 R TN D + + + Sbjct: 70 LSDTRYERIETNSLAQDETRLINLYRKL 97 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 36/80 (45%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ +R++K ++QI L + T+S YE + P +K K++ + +D+I Sbjct: 10 MNRIRELREEKKITQIRLSIELEVSQETISAYEMEKYYPSVKSLIKLQNIFGVSIDYILG 69 Query: 175 GDEVIVPKSIKRAKGNQSSK 194 + + + ++ Sbjct: 70 LSDTRYERIETNSLAQDETR 89 >gi|153954530|ref|YP_001395295.1| hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555] gi|146347388|gb|EDK33924.1| Hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555] Length = 100 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 30/91 (32%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RIK +R +N T ++A ++ EN S S L I+ Sbjct: 2 QFGERIKSLRLSNKLTATQLAKDIGVTREYLSRLENNAKSPSFELLEKLCGALNITLAEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + D E + +L+ + Sbjct: 62 FKTDSSDIIPEHFKEFINQNKNLTPEQLEKL 92 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 1/83 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+KS+R ++ + K +G+ LS E P + K+ L Sbjct: 1 MQFGERIKSLRLSNKLTATQLAKDIGVTREYLSRLENNAKSPSFELLEKLCGALNITLAE 60 Query: 172 IYFGDEV-IVPKSIKRAKGNQSS 193 + D I+P+ K + Sbjct: 61 FFKTDSSDIIPEHFKEFINQNKN 83 >gi|111019118|ref|YP_702090.1| DNA binding protein [Rhodococcus jostii RHA1] gi|110818648|gb|ABG93932.1| possible DNA binding protein [Rhodococcus jostii RHA1] Length = 470 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VGTR++ +R +Q +A S +N E+ + ++ L + + + Sbjct: 6 VGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDT 61 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RL+ +R ++G+SQ K L + S L+ E + +I +V Sbjct: 1 MSKTFVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVD 60 Query: 169 LDWIYFGDEV 178 + D+ Sbjct: 61 TTFFSSQDDT 70 >gi|222053702|ref|YP_002536064.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221562991|gb|ACM18963.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 40/99 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +G RIK++RK TQ+++A V+ E G S S+ + + Sbjct: 1 MKTTKELLGARIKELRKLRKMTQEKLAEQIGVDPKYVSFIEVGRSSPSLEAMEKIAQALD 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + ++D + R + + +LK I + Sbjct: 61 VEMKDMFDFSHHEAREVSIEQIDEMLSGVTEDQLKIIHR 99 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 AR+K +RK + M+Q + + +G+ +S E GR+ P ++ KI Q + ++ Sbjct: 10 ARIKELRKLRKMTQEKLAEQIGVDPKYVSFIEVGRSSPSLEAMEKIAQALDVEMKDMF 67 >gi|19919304|gb|AAM08234.1| putative phage repressor [Legionella pneumophila] gi|307608914|emb|CBW98314.1| putative phage repressor [Legionella pneumophila 130b] Length = 227 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G RI + RKA T K + A ++ + +E G+ + L ++S Sbjct: 8 KEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKLLAQALDVSPA 67 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYE 147 ++ E + + + + K G + + ST E Sbjct: 68 YLMCLSDTQLHREAKNPSQLIPLLDY----RQACEAKLHTGAEISGDKVFISVSTALQPE 123 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ RK KG++ G+L G + + L+N+EQG P + + + Q ++ Sbjct: 12 KRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKLLAQALDVSPAYLMC 71 Query: 175 GDEVIVPKSIKR 186 + + + K Sbjct: 72 LSDTQLHREAKN 83 >gi|49476100|ref|YP_034141.1| DNA binding protein [Bartonella henselae str. Houston-1] gi|49238908|emb|CAF28203.1| DNA binding protein [Bartonella henselae str. Houston-1] Length = 152 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ RK +QK++ + +E G+ + ++S + Sbjct: 47 VGKRIRYRRKMLGLSQKQLGHSLGVTFQQIQKYEKGINRVGAGRLQEIATLLDVSIS-FF 105 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++ + + K + LKS R+ K Q Sbjct: 106 YADISKKEHVSYPRDKGISNKEEDFLLKSFRELKPKKQKAI 146 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + ++G R++ RK G+SQ + G LG+ + YE+G ++I Sbjct: 36 QNKNPHFNDISVGKRIRYRRKMLGLSQKQLGHSLGVTFQQIQKYEKGINRVGAGRLQEIA 95 Query: 163 QVTKKHLDWIY 173 + + + Y Sbjct: 96 TLLDVSISFFY 106 >gi|219853774|ref|YP_002470896.1| hypothetical protein CKR_0431 [Clostridium kluyveri NBRC 12016] gi|219567498|dbj|BAH05482.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 69 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 IK +RK N Q+++A +N EN ++ A L N + D +++ + Sbjct: 9 IKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKLFEPD 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK+K Q + LG+ T++ E + P + A K+ + +D ++ Sbjct: 5 MKNSIKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKLF 64 Query: 174 FGD 176 D Sbjct: 65 EPD 67 >gi|126699832|ref|YP_001088729.1| putative regulatory protein [Clostridium difficile 630] gi|254975815|ref|ZP_05272287.1| putative regulatory protein [Clostridium difficile QCD-66c26] gi|255101355|ref|ZP_05330332.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|255307231|ref|ZP_05351402.1| putative regulatory protein [Clostridium difficile ATCC 43255] gi|255314944|ref|ZP_05356527.1| putative regulatory protein [Clostridium difficile QCD-76w55] gi|255517618|ref|ZP_05385294.1| putative regulatory protein [Clostridium difficile QCD-97b34] gi|255650729|ref|ZP_05397631.1| putative regulatory protein [Clostridium difficile QCD-37x79] gi|260683815|ref|YP_003215100.1| putative regulatory protein [Clostridium difficile CD196] gi|260687475|ref|YP_003218609.1| putative regulatory protein [Clostridium difficile R20291] gi|306520644|ref|ZP_07406991.1| putative regulatory protein [Clostridium difficile QCD-32g58] gi|115251269|emb|CAJ69100.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209978|emb|CBA63987.1| putative regulatory protein [Clostridium difficile CD196] gi|260213492|emb|CBE05196.1| putative regulatory protein [Clostridium difficile R20291] Length = 105 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+ RK N T KE A + E+G + S++ + N IS D + Sbjct: 4 IGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISADVLI 63 Query: 92 DG 93 Sbjct: 64 KD 65 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG RLK RK ++ EF ++G+ ++ E G+ P +K K + D Sbjct: 1 MNYIGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISAD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + ++ + + ++ Sbjct: 61 VLIKDITSTGKTYLENDINEELKDLNSRE 89 >gi|27764612|ref|NP_776234.1| Yga2B [Corynebacterium glutamicum] gi|27657783|gb|AAO18211.1| Yga2B [Corynebacterium glutamicum] Length = 81 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +TP+ ++ +G RI+D+RK +Q+E+A + + V+ E G + S+ L L Sbjct: 1 MTPD-KKILIQLGGRIRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLA 59 Query: 81 NEYEISFDWIYDG 93 + + G Sbjct: 60 GVLGVDAGDLVTG 72 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +RK G+SQ E L GM + +S+ E+G + + V + G Sbjct: 15 IRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVLGVDAGDLVTG 72 >gi|325912400|ref|ZP_08174795.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|325475742|gb|EGC78913.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 109 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++K +R N TQKE+AI + ++A+ +E G S S + ++ + + Sbjct: 4 GKKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISETFDCDISALIN 63 Query: 93 GEVIDRRYED 102 E Sbjct: 64 HEPNSIFEIM 73 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + ++Q E G+ ++ + NYE G P + +KI + + Sbjct: 1 MISGKKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISETFDCDISA 60 Query: 172 IYFGD 176 + + Sbjct: 61 LINHE 65 >gi|319946413|ref|ZP_08020650.1| transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747381|gb|EFV99637.1| transcriptional regulator [Streptococcus australis ATCC 700641] Length = 88 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + ++++ +I T + + K++ ++K R ++ TQ ++A + L E Sbjct: 4 ICCKIENIVYNRVIKTRKEKHVAKNL--KLKMARVEHDMTQGDLADAIGVTRQTIGLIEA 61 Query: 67 GMCSTSIRYALYLRNEYEISFDWIY 91 G + ++ L + + + D ++ Sbjct: 62 GKYNPTLSLCLAICKTLDKTLDQLF 86 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 ++ + Y V ++ A +LK R + M+Q + +G+ T+ E G+ Sbjct: 4 ICCKIENIVYNRVIKTRKEKHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGK 63 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFG 175 P + I + K LD +++ Sbjct: 64 YNPTLSLCLAICKTLDKTLDQLFWE 88 >gi|229079791|ref|ZP_04212324.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|228703631|gb|EEL56084.1| Transcriptional regulator [Bacillus cereus Rock4-2] Length = 116 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 2/108 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ RIK IR + Q++ + + V+ FENG S + + + +++ Sbjct: 2 DMKDRIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI-EFGKLLG 137 GE + +D +K + A L ++D + Q+ + L Sbjct: 62 -YGENNEANQDDNKYEKFKEIMAWLEPLPKDKEDMALDQMLAIAQALN 108 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K IR + M+Q +FGK + + T+S +E G+ P + KI + +++ Sbjct: 1 MDMKDRIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 +Y + K K Sbjct: 61 LYGENNEANQDDNKYEK 77 >gi|187733300|ref|YP_001879888.1| repressor protein C2 [Shigella boydii CDC 3083-94] gi|187430292|gb|ACD09566.1| repressor protein C2 [Shigella boydii CDC 3083-94] Length = 218 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISF 87 K +G R+ + R+ TQ +A A A++ E G S + + S Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGITRVAISKAEQGLTKSFNGDTLFKVAAALGCSP 60 Query: 88 DWIYDGEVIDRRYEDVTN 105 W+ +G+ D+ +E+ Sbjct: 61 QWLQNGDEKDKHWENNVK 78 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHL 169 ++G RL + R+ G++Q K G+ +S EQG T K+ Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGITRVAISKAEQGLTKSFNGDTLFKVAAALGCSP 60 Query: 170 DWIYFGDE 177 W+ GDE Sbjct: 61 QWLQNGDE 68 >gi|170756399|ref|YP_001781169.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121611|gb|ACA45447.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 370 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 34/90 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ+++A +AV+ +E+G I + + ++ D + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVTIDTLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ E + + + Sbjct: 66 NFKIELSDEEVMDIFNECEKLFSNGEIHKA 95 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + +RK+K ++Q + +G+ + +S +E G + P+I I Sbjct: 1 MEKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVT 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + + Sbjct: 61 IDTLLNFKIELSDEEV 76 >gi|168214614|ref|ZP_02640239.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] gi|170713909|gb|EDT26091.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] Length = 123 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK TQ + N S ++L E+G + S R + +++++ +W+ G Sbjct: 3 KRVKELRKRLGLTQDQFGKKINMGRSNLSLIESGKVNISPRVVNDICEKFQVNEEWLRSG 62 Query: 94 EVIDRRYEDVTNK 106 + + D + Sbjct: 63 KGEIFKIVDDNEQ 75 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +RK G++Q +FGK + M S LS E G+ + I + + + +W+ Sbjct: 1 MNKRVKELRKRLGLTQDQFGKKINMGRSNLSLIESGKVNISPRVVNDICEKFQVNEEWLR 60 Query: 174 FGDEVIVPKSIKRAKGNQS 192 G I + N++ Sbjct: 61 SGKGEIFKIVDDNEQFNKT 79 >gi|24215594|ref|NP_713075.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657038|ref|YP_001124.1| transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196747|gb|AAN50093.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45600275|gb|AAS69761.1| transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 203 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 28/85 (32%) Query: 13 SLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 +++E + V +K IR + ++A + ++ E G + Sbjct: 4 AMEELEEGKESSSEHITEVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPT 63 Query: 73 IRYALYLRNEYEISFDWIYDGEVID 97 I + N + F + + + Sbjct: 64 ISVLWKIANGLNVPFSELLKEKGTE 88 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + LK IR KG S + G+ + LS EQG+++P I KI + Sbjct: 22 VVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSEL 81 Query: 173 Y--FGDEVIVPKSIKRAKGNQSSKK 195 G E ++ + K SS K Sbjct: 82 LKEKGTEGVIVMKAENTKVLFSSSK 106 >gi|16126471|ref|NP_421035.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235251|ref|YP_002517688.1| Cro/CI family transcriptional regulator [Caulobacter crescentus NA1000] gi|13423739|gb|AAK24203.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964424|gb|ACL95780.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus NA1000] Length = 64 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q ++A +N E G S+ A + + + I+ Sbjct: 3 NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFKIARLFGQPIESIFQD 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ + L + T++ E G+ P + A KI ++ + ++ I+ Sbjct: 1 MKNRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFKIARLFGQPIESIF 60 Query: 174 FGD 176 + Sbjct: 61 QDE 63 >gi|15613851|ref|NP_242154.1| transcriptional repressor of PBSX genes [Bacillus halodurans C-125] gi|10173904|dbj|BAB05007.1| transcriptional repressor of PBSX genes [Bacillus halodurans C-125] Length = 112 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 6/100 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +R +Q+E+A S + +E + + ++++ D+I Sbjct: 3 FGKRLRSLRINKKLSQEELAKTLGLNRSTLARYELENTQPDYETLTKMADFFQVTTDYIL 62 Query: 92 DGEVIDRRYEDV------TNKKRLDPYAIGARLKSIRKDK 125 + + + + LK R+ K Sbjct: 63 GRVDDETTQLSISFSHGGEELTEDEKAHLEQELKKYRELK 102 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G RL+S+R +K +SQ E K LG+ STL+ YE T P+ + K+ + D+ Sbjct: 1 MSFGKRLRSLRINKKLSQEELAKTLGLNRSTLARYELENTQPDYETLTKMADFFQVTTDY 60 Query: 172 IYFG-DEVIVPKSIKRAKGNQSSKKSKK 198 I D+ SI + G + + +K Sbjct: 61 ILGRVDDETTQLSISFSHGGEELTEDEK 88 >gi|330821963|ref|YP_004350825.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327373958|gb|AEA65313.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 193 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 35/98 (35%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + ++G +I+ +R+ +T E A A + ++ E G+ S SI + + Sbjct: 9 QAQNAAVELGGKIRALRQRLKRTLDETAGAAGISKPFLSQVERGLASPSITSLAGIAHAL 68 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + + +R + + Sbjct: 69 GVNVQYFVETPSEERSVCRGDQLRFFSFADSANLFARL 106 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R+ + E G+ LS E+G P I I ++ + Sbjct: 21 IRALRQRLKRTLDETAGAAGISKPFLSQVERGLASPSITSLAGIAHALGVNVQYFV 76 >gi|325522655|gb|EGD01175.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 193 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P +G++I+ +R+ +T E A A + ++ E G+ S S+ + Sbjct: 8 PRSADAAAALGSKIRALRQRLKRTLDETATVAGISKPFLSQVERGLASPSLTSLAGIAQA 67 Query: 83 YEISFDWIYDGEVIDRR 99 ++ + D +R Sbjct: 68 LGVTVQYFVDTPSEERS 84 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G++++++R+ + E + G+ LS E+G P + I Q + + Sbjct: 16 ALGSKIRALRQRLKRTLDETATVAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYF 75 Query: 173 Y 173 Sbjct: 76 V 76 >gi|325846936|ref|ZP_08169793.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481178|gb|EGC84222.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 241 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 27/77 (35%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD G + RK N TQK++A AV+ +E G I + L ++ Sbjct: 7 KDFGEFVCKKRKEKNMTQKDIAEKLYVSVQAVSKWERGKSLPDISLLMPLAKILDVKLVN 66 Query: 90 IYDGEVIDRRYEDVTNK 106 + + + Sbjct: 67 LLESKEEKAEDSQKIEN 83 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 48/106 (45%), Gaps = 10/106 (9%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K ++ G + RK+K M+Q + + L + +S +E+G+++P+I + ++ Sbjct: 1 MKEINKKDFGEFVCKKRKEKNMTQKDIAEKLYVSVQAVSKWERGKSLPDISLLMPLAKIL 60 Query: 166 KKHLDWIYFGDEV----------IVPKSIKRAKGNQSSKKSKKDKK 201 L + E ++ K ++ K ++ K+ +K K+ Sbjct: 61 DVKLVNLLESKEEKAEDSQKIENLLEKIVEINKEDEIYKRKEKIKR 106 >gi|319405105|emb|CBI78709.1| transcriptional regulator [Bartonella sp. AR 15-3] Length = 137 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 2/99 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++ + +E G + ++ + + Sbjct: 15 VGARIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQAIAEIMDVPVSYFF 74 Query: 92 DG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + ++ +D + ++ +R +S Sbjct: 75 DKGIAIQSIDGFTESDNNFIDFCSSSEGIQLMRAFTNIS 113 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GAR++ R G++Q + G+ LG+ + YE+G + I ++ + + Sbjct: 13 IYVGARIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQAIAEIMDVPVSY 72 Query: 172 IY 173 + Sbjct: 73 FF 74 >gi|299534571|ref|ZP_07047903.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] gi|298729944|gb|EFI70487.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] Length = 180 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK +R TQ+E+ + + ++ E + S SI + Sbjct: 2 QIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSRPKDF 61 Query: 91 YDGEVIDRRYEDVTNKK 107 +D E +++ + Sbjct: 62 FDDESPEQKVVYTEEDQ 78 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA++K++R KG++Q E G+ + +S E+ P I+ I +V Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSRPKD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + + + + KK Sbjct: 61 FFDDESPEQKVVYTEEDQSTYTDEEKK 87 >gi|291526299|emb|CBK91886.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 69 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K + ++++R+ T K++ G E +++ +E G L Y Sbjct: 1 MNEVEKALSHNLREVREKKGYTLKDVVKGTGYTEVSISRWETGTRIPKATVLYTLAKFYG 60 Query: 85 ISFDWIY 91 +S D + Sbjct: 61 VSVDRFF 67 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ L+ +R+ KG + + K G ++S +E G IP+ + + +D Sbjct: 7 ALSHNLREVREKKGYTLKDVVKGTGYTEVSISRWETGTRIPKATVLYTLAKFYGVSVDRF 66 Query: 173 YF 174 ++ Sbjct: 67 FW 68 >gi|229526959|ref|ZP_04416356.1| transcriptional regulator Cro/CI family [Vibrio cholerae 12129(1)] gi|229335571|gb|EEO01051.1| transcriptional regulator Cro/CI family [Vibrio cholerae 12129(1)] Length = 70 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +++ RK +Q+ +A A S + E G + ++ + +S + Sbjct: 9 FGEKVRQTRKEKGLSQEALADLAGIDRSYMGHIERGDQNITLTKIYQISEALRVSVSDLI 68 Query: 92 DG 93 G Sbjct: 69 SG 70 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G +++ RK+KG+SQ L G+ S + + E+G + +I + + + + Sbjct: 8 AFGEKVRQTRKEKGLSQEALADLAGIDRSYMGHIERGDQNITLTKIYQISEALRVSVSDL 67 Query: 173 YFG 175 G Sbjct: 68 ISG 70 >gi|229131388|ref|ZP_04260287.1| hypothetical protein bcere0014_3580 [Bacillus cereus BDRD-ST196] gi|229165389|ref|ZP_04293175.1| hypothetical protein bcere0007_3780 [Bacillus cereus AH621] gi|228618093|gb|EEK75132.1| hypothetical protein bcere0007_3780 [Bacillus cereus AH621] gi|228652079|gb|EEL08017.1| hypothetical protein bcere0014_3580 [Bacillus cereus BDRD-ST196] Length = 83 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I ++R ANN +Q +A N +N EN S+ A L + D ++ Sbjct: 22 NQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLFLY 81 Query: 94 E 94 + Sbjct: 82 K 82 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 24/59 (40%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 21 KNQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|103486182|ref|YP_615743.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976259|gb|ABF52410.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 63 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q+++A +VN E G S+ A + + + + + I+ Sbjct: 3 NRLKVLRAERDWSQQDLADRLEVSRQSVNAIETGKYDPSLPLAFRIADLFGLPIEAIFLK 62 Query: 94 E 94 + Sbjct: 63 D 63 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ + L + +++ E G+ P + A +I + ++ I+ Sbjct: 1 MKNRLKVLRAERDWSQQDLADRLEVSRQSVNAIETGKYDPSLPLAFRIADLFGLPIEAIF 60 Query: 174 FGD 176 D Sbjct: 61 LKD 63 >gi|158317899|ref|YP_001510407.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158113304|gb|ABW15501.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 277 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +DVG I++ R+ + +++A A ++ E G+ S + IS Sbjct: 5 HVRDVGDFIREQRRGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISA 64 Query: 88 DWIY 91 + +Y Sbjct: 65 EVLY 68 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R+ +S + + G+ N LS E+G P + ++I + + + +Y Sbjct: 12 FIREQRRGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVLY 68 >gi|312865784|ref|ZP_07726006.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098659|gb|EFQ56881.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 129 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK IR+ G++Q + + L + S ++ +E +P+I I + L+ Sbjct: 1 MKVSQVLKEIRQKHGLTQDDLAQKLHVSRSAIARWESEVGLPDIGNLLTISETFHTSLEK 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D+ I K ++ + + Sbjct: 61 LIKEDKAIKEKVVRDNQIKK 80 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V +K+IR+ + TQ ++A + SA+ +E+ + I L + + S + + Sbjct: 2 KVSQVLKEIRQKHGLTQDDLAQKLHVSRSAIARWESEVGLPDIGNLLTISETFHTSLEKL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + N+ + Sbjct: 62 IKEDKAIKEKVVRDNQIK 79 >gi|303229250|ref|ZP_07316046.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] gi|302516105|gb|EFL58051.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] Length = 148 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 29/83 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R K+Q E+A +A++ +E G + L YE++ D + + Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALARYYELTLDELVNV 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGA 116 + + D + Sbjct: 65 NNEQQERIYDISTAVKDTHIKFK 87 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK R G SQIE K +G+ N+ LSNYE G P++ + + + LD Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALARYYELTLDE 60 Query: 172 IYFGDEVIVPK 182 + + + Sbjct: 61 LVNVNNEQQER 71 >gi|317131203|ref|YP_004090517.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469182|gb|ADU25786.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 234 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 24/63 (38%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDR 98 +RK +QK A ++ ++ +E G+ + + + Y +S D++ Sbjct: 12 LRKEKGISQKNAAEELGISQALLSHYEKGIRECGLEFVVRAAGYYNVSCDYLLGRSPDRN 71 Query: 99 RYE 101 Sbjct: 72 GTM 74 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +RK+KG+SQ + LG+ + LS+YE+G ++ + D++ Sbjct: 12 LRKEKGISQKNAAEELGISQALLSHYEKGIRECGLEFVVRAAGYYNVSCDYLL 64 >gi|229160744|ref|ZP_04288736.1| Transcriptional regulator, Xre [Bacillus cereus R309803] gi|228622759|gb|EEK79593.1| Transcriptional regulator, Xre [Bacillus cereus R309803] Length = 405 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E++ G+ +S ++ ENG + S++ Y+ ++ E ++ Sbjct: 5 LGEKIKALRKEKKLTQTELS-GSELTKSMLSQIENGKATPSMKTLQYIADKLECEMSFLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAI 114 + + + +K + Sbjct: 64 EDDDEEIVELIQQTEKLIKANKC 86 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + + ++ Sbjct: 7 EKIKALRKEKKLTQTELSG-SELTKSMLSQIENGKATPSMKTLQYIADKLECEMSFLLED 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D+ + + I++ + + K + ++ P Sbjct: 66 DDEEIVELIQQTEKLIKANKCDEVYETLLP 95 >gi|254513703|ref|ZP_05125766.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221531933|gb|EEE34990.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 209 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ RK N T E+A ++ ENG S S+ L + + + Sbjct: 25 IGREVRAFRKQQNITVAELAQLTGLSIGMLSKIENGNTSPSLTTLQSLADALSVPLTSFF 84 Query: 92 D 92 Sbjct: 85 R 85 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 1/111 (0%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + +++++ AIG +++ RK + ++ E +L G+ LS E G T P Sbjct: 6 TQNPHSVRSGDREKVLEVAIGREVRAFRKQQNITVAELAQLTGLSIGMLSKIENGNTSPS 65 Query: 155 IKPARKIKQVTKKHLDWIYF-GDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + L + +E K +G + ++ + N Sbjct: 66 LTTLQSLADALSVPLTSFFRQFEERREAVHTKAGEGVELEREGTRANHQYN 116 >gi|111220424|ref|YP_711218.1| putative DNA-binding protein [Frankia alni ACN14a] gi|111147956|emb|CAJ59622.1| Putative DNA-binding protein (partial match) [Frankia alni ACN14a] Length = 328 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+G I+D R+A + +++A A ++ E G+ S + IS + Sbjct: 7 RDLGDFIRDQRRAAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEV 66 Query: 90 IY 91 +Y Sbjct: 67 LY 68 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 L+ +G ++ R+ +S + K G+ N LS E+G P + ++I + + Sbjct: 4 LNVRDLGDFIRDQRRAAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRIS 63 Query: 169 LDWIY 173 + +Y Sbjct: 64 AEVLY 68 >gi|108759801|ref|YP_632649.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108463681|gb|ABF88866.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 160 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G+ ++ R TQ E+A + E G S++ L + I Sbjct: 48 EELATRIGSAAREARTQLGLTQAEVAEKLGLAHMVYSRLERGKMLPSVQTLLRMCAVLRI 107 Query: 86 SFDWIY 91 D + Sbjct: 108 GSDELL 113 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R G++Q E + LG+ + S E+G+ +P ++ ++ V + D + Sbjct: 59 REARTQLGLTQAEVAEKLGLAHMVYSRLERGKMLPSVQTLLRMCAVLRIGSDELL 113 >gi|28211495|ref|NP_782439.1| putative transcriptional regulator sinR [Clostridium tetani E88] gi|28203936|gb|AAO36376.1| putative transcriptional regulator sinR [Clostridium tetani E88] Length = 171 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISF 87 +K IK IR+ E++ + S ++ E G + +I L N E++ Sbjct: 26 FKMFDANIKRIREQKGLGVNELSRISGVNASYISALERGEKQNPTITILKKLANALEVTI 85 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D + E I+ + K Sbjct: 86 DELMKSEPINYDKLADWDDKH 106 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKH 168 D A +K IR+ KG+ E ++ G+ S +S E+ + P I +K+ + Sbjct: 25 DFKMFDANIKRIREQKGLGVNELSRISGVNASYISALERGEKQNPTITILKKLANALEVT 84 Query: 169 LDWIYFGDEVIVPK 182 +D + + + K Sbjct: 85 IDELMKSEPINYDK 98 >gi|15081541|ref|NP_150054.1| transcription regulator phage-related [Clostridium perfringens str. 13] gi|15076774|dbj|BAB62499.1| probable transcription regulator phage-related [Clostridium perfringens str. 13] Length = 367 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D LK RK + ++Q + K +G+ STLS YE G P I + ++ Sbjct: 1 MITIDWSKFSENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNIFVLITLSKLM 60 Query: 166 KKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +D + +E I+P K N +K+S+K + +N Sbjct: 61 NCSIDSLIGLSNEKIIPIPSTDIKNNYDTKESEKTNEENN 100 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 29/80 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 W +K+ RK TQ+++A S ++ +E+G +I + L S D Sbjct: 6 WSKFSENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNIFVLITLSKLMNCSID 65 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 + T+ K Sbjct: 66 SLIGLSNEKIIPIPSTDIKN 85 >gi|330866552|gb|EGH01261.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330895723|gb|EGH28013.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943309|gb|EGH45692.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330952098|gb|EGH52358.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] gi|330972181|gb|EGH72247.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 182 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F E VP++ Sbjct: 58 MVEFFSEESVPEN 70 >gi|323697559|ref|ZP_08109471.1| helix-turn-helix domain protein [Desulfovibrio sp. ND132] gi|323457491|gb|EGB13356.1| helix-turn-helix domain protein [Desulfovibrio desulfuricans ND132] Length = 178 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 8/122 (6%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + R+K RK + + A+ ++ + E + +I + + Sbjct: 3 TEDIRSAIADRLKTCRKEREMSLDKAALLTGVSKAMLGQIERRESAPTIATLWKIASGLN 62 Query: 85 ISFDWIYDGE-VIDRRYEDVTNKKRLDPYAIGARLKSIRK-------DKGMSQIEFGKLL 136 +SF + G D R N + I + R G Q Sbjct: 63 LSFSSFFAGRGGSDYRQVPFPNDPDMAIRVIFPYDAATRMEMFHVTLTNGHHQRSTAHRF 122 Query: 137 GM 138 G+ Sbjct: 123 GV 124 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI RLK+ RK++ MS + L G+ + L E+ + P I KI Sbjct: 9 AIADRLKTCRKEREMSLDKAALLTGVSKAMLGQIERRESAPTIATLWKIASGLNLSFSSF 68 Query: 173 YFG 175 + G Sbjct: 69 FAG 71 >gi|314937222|ref|ZP_07844567.1| transcriptional Regulator of molybdate metabolism, XRE family [Staphylococcus hominis subsp. hominis C80] gi|313654655|gb|EFS18402.1| transcriptional Regulator of molybdate metabolism, XRE family [Staphylococcus hominis subsp. hominis C80] Length = 87 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK RK +Q+E+A V+L E G + +I + + ++ + ++ Sbjct: 22 NNIKYYRKELKISQQELADRVEVTRQTVSLIELGKYNPTINLCIRIAKALDVDLNKLF 79 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +K RK+ +SQ E + + T+S E G+ P I +I + L+ Sbjct: 17 FLFMNNNIKYYRKELKISQQELADRVEVTRQTVSLIELGKYNPTINLCIRIAKALDVDLN 76 Query: 171 WIYFG 175 +++ Sbjct: 77 KLFWE 81 >gi|291524263|emb|CBK89850.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 73 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R A N Q+EM ++L E G S S+ AL + ++ + ++ Sbjct: 5 NRLKERRAALNVNQQEMGRLCGVSRQTISLIERGDYSPSVTLALTIAKVCGVTVEDVFYL 64 Query: 94 EVIDRRYED 102 + D E Sbjct: 65 QEEDEDEEK 73 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK R ++Q E G+L G+ T+S E+G P + A I +V ++ Sbjct: 1 MTLKNRLKERRAALNVNQQEMGRLCGVSRQTISLIERGDYSPSVTLALTIAKVCGVTVED 60 Query: 172 IYFGDEVIVPKS 183 +++ E + Sbjct: 61 VFYLQEEDEDEE 72 >gi|295699801|ref|YP_003607694.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439014|gb|ADG18183.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 104 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 30/71 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++P + + + ++ +R +Q+ +A A + +++ E G+ + + + L Sbjct: 10 VSPRLLELQALIAKNLRLLRDKKGMSQEVLADRAGLHRTQLSVIERGLRNMRLDTLVSLA 69 Query: 81 NEYEISFDWIY 91 +S + Sbjct: 70 AALGVSETELL 80 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 2/79 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 L+ +R KGMSQ G+ + LS E+G + + + Sbjct: 23 KNLRLLRDKKGMSQEVLADRAGLHRTQLSVIERGLRNMRLDTLVSLAAALGVSETELLVE 82 Query: 174 FGDEVIVPKSIKRAKGNQS 192 G+E + P+ + K + Sbjct: 83 SGEEPVAPRRGRPRKRTEP 101 >gi|288947745|ref|YP_003445128.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898261|gb|ADC64096.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 143 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K R A + +Q ++A + + V+ E+G + S+ L YE++ + Sbjct: 2 LHARLKSARIARDLSQAQVATALDLSQGFVSKLESGDKTPSVELLQKLAKLYEVTESHLL 61 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + ARLKS R + +SQ + L + +S E G P ++ +K+ ++ + + Sbjct: 1 MLHARLKSARIARDLSQAQVATALDLSQGFVSKLESGDKTPSVELLQKLAKLYEVTESHL 60 Query: 173 Y------FGDEVIVPKS 183 GDE K+ Sbjct: 61 LGSTIEGSGDESSGSKT 77 >gi|258653000|ref|YP_003202156.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556225|gb|ACV79167.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 73 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 36 IKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 I+ +R A TQ ++A V E G S S+ A + + + + D ++ + Sbjct: 11 IRALRFAAGEMTQADLADRIGVTRQTVIAIEQGRYSPSLEMAFRIAHVFGVGLDAVFQYQ 70 Query: 95 VID 97 Sbjct: 71 PDS 73 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 115 GARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R G M+Q + +G+ T+ EQGR P ++ A +I V LD ++ Sbjct: 8 TNSIRALRFAAGEMTQADLADRIGVTRQTVIAIEQGRYSPSLEMAFRIAHVFGVGLDAVF 67 >gi|227534216|ref|ZP_03964265.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188150|gb|EEI68217.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 344 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 31/74 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ R G++Q E +G+ +S +E+ + P+I + ++ ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELADKIGVSAPAVSKWEKRVSYPDITLLPALARILGTDVNT 60 Query: 172 IYFGDEVIVPKSIK 185 + + P+ + Sbjct: 61 LLTFSVTMDPEESR 74 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I++ R A TQ+E+A AV+ +E + I L + + Sbjct: 7 IRERRLALGLTQEELADKIGVSAPAVSKWEKRVSYPDITLLPALARILGTDVNTLLT 63 >gi|222098627|ref|YP_002532685.1| DNA-binding protein [Bacillus cereus Q1] gi|221242686|gb|ACM15396.1| dna-binding protein [Bacillus cereus Q1] Length = 98 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 34/69 (49%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +++P + ++K +RK ++Q+E K + + T+ E P ++ + KI + Sbjct: 30 KVEPMGVKNKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGV 89 Query: 168 HLDWIYFGD 176 ++ I+ + Sbjct: 90 KVEEIFTLE 98 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 38 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 97 Query: 94 E 94 E Sbjct: 98 E 98 >gi|332362047|gb|EGJ39849.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 158 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +RK N TQ E A ++++ +ENG+ S + ++ +S+ I Sbjct: 2 IGDNIKSLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVSYVDIV 61 Query: 92 DGEV 95 E Sbjct: 62 GEEK 65 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGDNIKSLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 ++++ P Sbjct: 61 VGEEKMLNP 69 >gi|256423759|ref|YP_003124412.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038667|gb|ACU62211.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 111 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I D+R +Q ++A ++ + +E G SI A + + +S D++ Sbjct: 4 GKIIADLRDKLAWSQTDLADKSSVSRVMIGKYERGEAVPSIDAAKRIADALGVSLDYLV 62 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G + +R SQ + + + YE+G +P I A++I LD+ Sbjct: 1 MNTGKIIADLRDKLAWSQTDLADKSSVSRVMIGKYERGEAVPSIDAAKRIADALGVSLDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G+ + K K + + ++DKK Sbjct: 61 LV-GEGINARFDKKTLKRLEELELLEEDKK 89 >gi|261345424|ref|ZP_05973068.1| peptidase, S24 family [Providencia rustigianii DSM 4541] gi|282566470|gb|EFB72005.1| peptidase, S24 family [Providencia rustigianii DSM 4541] Length = 230 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R N TQ E+A + ++ E+G R+ L S DW+ Sbjct: 3 ISERVKNKRILLNLTQAELAETVGTTQQSIEQLESGKTK-RPRFLPELAKALSCSVDWLV 61 Query: 92 DGEVIDRRYEDVTNK 106 G + N+ Sbjct: 62 TGRENNNDSLPPENE 76 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I R+K+ R ++Q E + +G ++ E G+T + ++ + +DW Sbjct: 1 MSISERVKNKRILLNLTQAELAETVGTTQQSIEQLESGKTK-RPRFLPELAKALSCSVDW 59 Query: 172 IYFGDEVIVPK 182 + G E Sbjct: 60 LVTGRENNNDS 70 >gi|218185799|gb|EEC68226.1| hypothetical protein OsI_36225 [Oryza sativa Indica Group] Length = 200 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 29/88 (32%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ Q V RI+ RK + E++ A+ + + E G + SI L Sbjct: 14 DVAQVSLAVANRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAAL 73 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDP 111 +S I + + + Sbjct: 74 GVSVADIVNVSSEPVVHVIEKQAIPVLW 101 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 29/75 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ R++S RKDK +S E + + L E+G P I K+ + Sbjct: 20 LAVANRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAALGVSVAD 79 Query: 172 IYFGDEVIVPKSIKR 186 I V I++ Sbjct: 80 IVNVSSEPVVHVIEK 94 >gi|154484771|ref|ZP_02027219.1| hypothetical protein EUBVEN_02489 [Eubacterium ventriosum ATCC 27560] gi|149734619|gb|EDM50536.1| hypothetical protein EUBVEN_02489 [Eubacterium ventriosum ATCC 27560] Length = 70 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K+I+ TQK +A S ++ ENG S+ + + N + D++ Sbjct: 9 IGKKLKEIQTHKGFTQKFVASSVKVNTSHISNIENGKVKISLTTLVNVCNVLGTTVDYVL 68 Query: 92 D 92 Sbjct: 69 K 69 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +D +IG +LK I+ KG +Q + + S +SN E G+ + + V Sbjct: 1 MKDIDFDSIGKKLKEIQTHKGFTQKFVASSVKVNTSHISNIENGKVKISLTTLVNVCNVL 60 Query: 166 KKHLDWIYF 174 +D++ Sbjct: 61 GTTVDYVLK 69 >gi|118444657|ref|YP_877308.1| DNA-binding protein [Clostridium novyi NT] gi|118135113|gb|ABK62157.1| DNA-binding protein, putative [Clostridium novyi NT] Length = 185 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K +R TQ ++A + ++ E + S SI + + + Sbjct: 8 NIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKDF 67 Query: 91 YDGEVIDRRYEDVTN 105 ++ + ++ + Sbjct: 68 FNNDEEEKIVFSKED 82 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK +R +KG++Q++ + +S E+ T P I I + +L Sbjct: 7 MNIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKD 66 Query: 172 IYFGDEV 178 + DE Sbjct: 67 FFNNDEE 73 >gi|302535844|ref|ZP_07288186.1| DNA-binding protein [Streptomyces sp. C] gi|302444739|gb|EFL16555.1| DNA-binding protein [Streptomyces sp. C] Length = 145 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S L IS + + Sbjct: 14 NLGEYLREQRRQAQLSLRQLADAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAETL 73 Query: 91 Y 91 Y Sbjct: 74 Y 74 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + G+ N LS E+G P +++ + + + +Y Sbjct: 17 EYLREQRRQAQLSLRQLADAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAETLY 74 >gi|163790911|ref|ZP_02185335.1| DNA-binding protein [Carnobacterium sp. AT7] gi|159873864|gb|EDP67944.1| DNA-binding protein [Carnobacterium sp. AT7] Length = 180 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 35/79 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R N TQ+E+A N + ++ E + S+ + S Sbjct: 2 EIGNQIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKDF 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 +D + ++R ++ + Sbjct: 62 FDEKQEEQRVVYTKDEITV 80 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R K ++Q E + + +S E+ ++P ++ I +V Sbjct: 1 MEIGNQIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + DE + + K + + + Sbjct: 61 FF--DEKQEEQRVVYTKDEITVYEDDE 85 >gi|157362961|ref|YP_001469728.1| XRE family transcriptional regulator [Thermotoga lettingae TMO] gi|157313565|gb|ABV32664.1| putative transcriptional regulator, XRE family [Thermotoga lettingae TMO] Length = 131 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 7/106 (6%) Query: 12 KSLQEYTLIITPEIRQYWK---DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 + +E + E + + + +G ++ RK +N TQK++A +S V+ E G Sbjct: 12 ELFEEIGFHHSEEEKAFIEAMSQIGGQLMAYRKKHNLTQKDLAKKLGISQSMVSKIETGE 71 Query: 69 CSTSIRYALYLRNEYE----ISFDWIYDGEVIDRRYEDVTNKKRLD 110 + SIR + + IS + + E D Sbjct: 72 KNISIRVLTKIVAAFGGRVRISLGILPEEEENKVPEYKFREAFPND 117 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 4/97 (4%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E I + + IG +L + RK ++Q + K LG+ S +S E G Sbjct: 15 EEIGFHHSEEEKAFIEAMSQIGGQLMAYRKKHNLTQKDLAKKLGISQSMVSKIETGEKNI 74 Query: 154 EIKPARKIKQVTK----KHLDWIYFGDEVIVPKSIKR 186 I+ KI L + +E VP+ R Sbjct: 75 SIRVLTKIVAAFGGRVRISLGILPEEEENKVPEYKFR 111 >gi|148557685|ref|YP_001265267.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502875|gb|ABQ71129.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 490 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 38/119 (31%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 + F + + + ++ + +G R+K +R+ N Q E+A S +N Sbjct: 1 MRRFAKICGELSADLQILRRSDRAMRKAYMGVRLKRLREERNLKQVELANALGISSSYLN 60 Query: 63 LFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E ++ L + + I + E E A ++ + Sbjct: 61 QLEQNQRPLTVPVLLKINAAFGIDVQLFSEDEEARLITELRDALAEGSESVSIAEIREL 119 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 GE+ + + + +G RLK +R+++ + Q+E LG+ +S L+ EQ + Sbjct: 7 ICGELSADLQILRRSDRAMRKAYMGVRLKRLREERNLKQVELANALGISSSYLNQLEQNQ 66 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + KI + ++ DE Sbjct: 67 RPLTVPVLLKINAAFGIDV-QLFSEDEE 93 >gi|118471236|ref|YP_885533.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] gi|118172523|gb|ABK73419.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] Length = 189 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 32/86 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R++ R+ + ++A A + ++L E GM + S+ + + + I +++ Sbjct: 5 GARLRQFRRERGMSLTDVAAKAEVTKGFLSLAERGMTNVSVPVLMRICDALGIGIGDLFE 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + L Sbjct: 65 YPAAPIVRSGAGAPLEMGGHGVREEL 90 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ARL+ R+++GMS + + LS E+G T + +I + ++ Sbjct: 6 ARLRQFRRERGMSLTDVAAKAEVTKGFLSLAERGMTNVSVPVLMRICDALGIGIGDLF 63 >gi|9634643|ref|NP_038317.1| ORF16 [Streptococcus phage 7201] gi|7248473|gb|AAF43509.1|AF145054_17 ORF16 [Streptococcus phage 7201] Length = 183 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +RK+ TQ E+A + + +E +S L + +E+S ++ D Sbjct: 2 NRIKQLRKSRKLTQAELADLIGVTKRTIIHWEK-YGFSSADKLQELADCFEVSISYLLDY 60 Query: 94 EVIDRRYEDVTNKKR 108 ++ + E +T Sbjct: 61 DINNTFSELITKINE 75 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +RK + ++Q E L+G+ T+ ++E+ +++ + + ++ Sbjct: 1 MNRIKQLRKSRKLTQAELADLIGVTKRTIIHWEKYGFS-SADKLQELADCFEVSISYLLD 59 Query: 175 GD 176 D Sbjct: 60 YD 61 >gi|325568077|ref|ZP_08144518.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325158278|gb|EGC70429.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 163 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K+ R+ N TQ +A + ++ +E G S + + + E +IS + + Sbjct: 6 LAMKLKEYREKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISLETLL 65 Query: 92 DGEVIDRRYEDVTNKKR 108 E + + K Sbjct: 66 LEETKKDNDDLKVSIKY 82 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +LK R+ ++Q +LL + + T+S +E G T P K KI + Sbjct: 1 MKETILAMKLKEYREKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDIS 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 L+ + + +K + Sbjct: 61 LETLLLEETKKDNDDLKVS 79 >gi|320333052|ref|YP_004169763.1| helix-turn-helix domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754341|gb|ADV66098.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM 21211] Length = 188 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 29/66 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI+ R+A +Q ++A A ++ ++ E G S + + L ++++ + Sbjct: 12 IARRIRVEREARQWSQADLAERAGVAKATISKVERGDMSPTAVTLVRLATAFDLTLAGLL 71 Query: 92 DGEVID 97 + Sbjct: 72 LRAETE 77 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R+ + SQ + + G+ +T+S E+G P ++ L + Sbjct: 14 RRIRVEREARQWSQADLAERAGVAKATISKVERGDMSPTAVTLVRLATAFDLTLAGLLLR 73 Query: 176 DEV 178 E Sbjct: 74 AET 76 >gi|228956235|ref|ZP_04118111.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803444|gb|EEM50187.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 105 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+RIK++RK+ Q E+A + ++L+E+ S + +S D+I Sbjct: 1 MGSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIM 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E+ + K D I R+ + Sbjct: 61 GLSKHKTFDEETSKKITDDVEDIMKRINQL 90 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G+R+K +RK M Q E +G+ + +S YE + P + I +VT D+I Sbjct: 1 MGSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIM 60 Query: 174 -------FGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 F +E + + + DK+S Sbjct: 61 GLSKHKTFDEETSKKITDDVEDIMKRINQLPADKRSK 97 >gi|254385813|ref|ZP_05001133.1| transcriptional regulatory protein [Streptomyces sp. Mg1] gi|194344678|gb|EDX25644.1| transcriptional regulatory protein [Streptomyces sp. Mg1] Length = 192 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 23/81 (28%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ Q + + +K R T +A A V E + S+ + L + Sbjct: 2 DMDQLSQSLARNLKHWRTRRGLTLDGLAARAGLSRGMVIQVEQARTNPSLETMVKLADAL 61 Query: 84 EISFDWIYDGEVIDRRYEDVT 104 + + D Sbjct: 62 GVDMTALLDLNQEPHVRITPP 82 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK R +G++ G+ + EQ RT P ++ K+ + + Sbjct: 12 RNLKHWRTRRGLTLDGLAARAGLSRGMVIQVEQARTNPSLETMVKLADALGVDMTALL 69 >gi|196033516|ref|ZP_03100928.1| helix-turn-helix Cro and cI family protein [Bacillus cereus W] gi|195993950|gb|EDX57906.1| helix-turn-helix Cro and cI family protein [Bacillus cereus W] Length = 115 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +R+ N TQ ++ +V+ FE G S + + D++ G Sbjct: 5 DRLRQLRRERNLTQHDLGQAIGVTAGSVSKFETGFKPASRETVERAADFLGVPVDYLL-G 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 R + N+K L +L Sbjct: 64 RSDSRELDADMNQKYLHIKNRLEQL 88 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL+ +R+++ ++Q + G+ +G+ ++S +E G + + +D+ Sbjct: 1 MEFKDRLRQLRRERNLTQHDLGQAIGVTAGSVSKFETGFKPASRETVERAADFLGVPVDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|149019378|ref|ZP_01834740.1| hypothetical protein CGSSp23BS72_05475 [Streptococcus pneumoniae SP23-BS72] gi|147931248|gb|EDK82227.1| hypothetical protein CGSSp23BS72_05475 [Streptococcus pneumoniae SP23-BS72] Length = 69 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRYLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R ++ ++Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MAKNLKLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRYLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 >gi|42525956|ref|NP_971054.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41816006|gb|AAS10935.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 91 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 33/80 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ R+ +Q E+A+ A+ ++ +N E G + S+ L + + I+ ++ Sbjct: 12 NRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALNINPAVLFSD 71 Query: 94 EVIDRRYEDVTNKKRLDPYA 113 ++ + + Sbjct: 72 TEEEKEKAKKQVLDIIQRWM 91 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ R+ G+SQ+E + + ++ E G+ P + KI + ++ Sbjct: 12 NRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALNINPAVLFSD 71 >gi|20808446|ref|NP_623617.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517063|gb|AAM25221.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 127 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 31/94 (32%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++++G R+ ++R+ T+++ A + + +E G S L Y Sbjct: 2 KEEVYREIGRRLWELRRQRGFTREQAARYLGISQKQLARYEKGREKISTDVLERLAGLYG 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ D V + Sbjct: 62 CDYKYLLDDNESSSEQIAVNFGTYKISDEDLEVI 95 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 27/63 (42%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R+ +G ++ + + LG+ L+ YE+GR ++ + ++ +E Sbjct: 15 ELRRQRGFTREQAARYLGISQKQLARYEKGREKISTDVLERLAGLYGCDYKYLLDDNESS 74 Query: 180 VPK 182 + Sbjct: 75 SEQ 77 >gi|330876473|gb|EGH10622.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 182 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F E VP++ Sbjct: 58 MVEFFSEETVPEN 70 >gi|313897846|ref|ZP_07831387.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957381|gb|EFR39008.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 223 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 25 IRQYWKDV---GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + Y K + G I+ IRK Q+E+A +++ E G+ + + + Sbjct: 1 MEHYEKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMD 60 Query: 82 EYEISFDWIYDGE 94 ++ + + GE Sbjct: 61 VLGVTPNELLSGE 73 >gi|302879146|ref|YP_003847710.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581935|gb|ADL55946.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 117 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 6/98 (6%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I + RK N TQ E+A V+ FE G S+ L +I + Sbjct: 11 ANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYKLVAA 70 Query: 94 EVIDRRYEDVTNKKRL------DPYAIGARLKSIRKDK 125 + ++ + D LK + Sbjct: 71 SSPRHDDQSFILEEWMSELTPKDREFAMNTLKQLCAHL 108 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A + RK +Q E + +G+ T+S +E+G +P + K+ + K L + Sbjct: 11 ANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYKLV 68 >gi|299133379|ref|ZP_07026574.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593516|gb|EFI53716.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 136 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 5/104 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG+R++ R +Q+++ + +E G + + ++ + Sbjct: 11 KYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIADILQVPVSF 70 Query: 90 IYDGEVIDRRYED-----VTNKKRLDPYAIGARLKSIRKDKGMS 128 +++G + + D A L R ++ Sbjct: 71 LFEGGPTSNTSVEGLGEAPSPAYVSDFLATSEGLALTRAFTKIT 114 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 +D Y +R++ R G+SQ + G LG+ + YE+G +I Sbjct: 4 KTPNPVDKYVG-SRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIAD 62 Query: 164 VTKKHLDWIYFG 175 + + + +++ G Sbjct: 63 ILQVPVSFLFEG 74 >gi|295110810|emb|CBL24763.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 71 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +RIK +R+ Q+ +A + ++ +E + + + + ++ D++ Sbjct: 3 SRIKQLREKRGLIQEILAAELGITQQMLSKYERDVTLIKVDILKKIATYFNVTTDYLL 60 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +R+K +R+ +G+ Q LG+ LS YE+ T+ ++ +KI D++ Sbjct: 1 MESRIKQLREKRGLIQEILAAELGITQQMLSKYERDVTLIKVDILKKIATYFNVTTDYLL 60 >gi|260890735|ref|ZP_05901998.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] gi|260859613|gb|EEX74113.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] Length = 108 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++VG R+K +R+ + +E+A A++ +EN + + L N Y +S + Sbjct: 1 MENVGKRLKSLREKYKFSLEEVAQKIKSSAGAISRYENNERKINSESLIRLSNLYNVSPE 60 Query: 89 WIYDGEVIDRRY 100 +I G D Sbjct: 61 YILYGINKDSSN 72 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLKS+R+ S E + + +S YE + ++ + ++I +G Sbjct: 6 KRLKSLREKYKFSLEEVAQKIKSSAGAISRYENNERKINSESLIRLSNLYNVSPEYILYG 65 Query: 176 ---DEVIVPKSIKRAKGNQSSKKSKKDK 200 D + SI N++ +K++ Sbjct: 66 INKDSSNLESSIISFFNNENIDFKEKEE 93 >gi|227540308|ref|ZP_03970357.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239844|gb|EEI89859.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 193 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +RIK+IRK T +++A A + ++ EN S+ + + EI Sbjct: 8 KISSRIKEIRKGKGITIQDLADRAGVSKGLISQVENNRTVPSLLVLINIIGALEIDLTEF 67 Query: 91 YDGEVID 97 + G D Sbjct: 68 FKGFTSD 74 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K + I +R+K IRK KG++ + G+ +S E RT+P + I Sbjct: 1 MKDNTIFKISSRIKEIRKGKGITIQDLADRAGVSKGLISQVENNRTVPSLLVLINIIGAL 60 Query: 166 KKHLDWIYFG---DEVIVPKSIKRAKGNQSSKKS 196 + L + G D + P ++R + + +K Sbjct: 61 EIDLTEFFKGFTSDGDLGPVIVRRKEQYEPFEKE 94 >gi|213970668|ref|ZP_03398793.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|213924502|gb|EEB58072.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 198 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 18 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 65 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 7/90 (7%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 I R + LD +G RL+SIRK KG+SQ E K G+ NST+S E+ P Sbjct: 3 FISTRPDKNWGNIALD---VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPS 59 Query: 155 IKPARKIKQVT-KKHLDWIYFGDEVIVPKS 183 I RK V + + F E VP++ Sbjct: 60 ISSLRK---VLGGIPMSMVEFFSEETVPEN 86 >gi|254465799|ref|ZP_05079210.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacterales bacterium Y4I] gi|206686707|gb|EDZ47189.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacterales bacterium Y4I] Length = 188 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + R+K+ R+A + + +A + S V+ E G S +I L Sbjct: 1 MTENTDDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLT 60 Query: 81 NEYEISFDWIYD 92 ++ F + + Sbjct: 61 RALQVDFAGLLE 72 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ +G+S L G+ S +S E+G + P I + + + + Sbjct: 13 PARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72 Query: 175 GDEVIVPKSIKRA 187 ++ + RA Sbjct: 73 SGDMQDRIEVLRA 85 >gi|163743903|ref|ZP_02151274.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161382844|gb|EDQ07242.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 188 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+A + + +A + S V+ E G S +I L ++ F + D Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLDS 73 Query: 94 EVIDRRYEDVTN 105 E + N Sbjct: 74 NEAQDSIEILRN 85 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ +G+S L G+ S +S E+G + P I + + + + Sbjct: 13 PARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLD 72 Query: 175 GDEVIVPKSIKR 186 +E I R Sbjct: 73 SNEAQDSIEILR 84 >gi|158336889|ref|YP_001518064.1| hypothetical protein AM1_3757 [Acaryochloris marina MBIC11017] gi|158307130|gb|ABW28747.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 116 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 40/92 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G R+K +R +Q ++A + + E G +I + + L Y++S DW Sbjct: 19 QKIGRRMKQLRAHLGLSQVQIAKNLSISVRQWSGCECGDYLLNIDFLILLNTYYQVSIDW 78 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + G+ + ++++ + LK + Sbjct: 79 LLTGKGNMFMDDTSETEQKITSQELAEELKVL 110 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 35/86 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +R G+SQ++ K L + S E G + I + + +DW+ G Sbjct: 23 RRMKQLRAHLGLSQVQIAKNLSISVRQWSGCECGDYLLNIDFLILLNTYYQVSIDWLLTG 82 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + +S++ ++ K Sbjct: 83 KGNMFMDDTSETEQKITSQELAEELK 108 >gi|150389363|ref|YP_001319412.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949225|gb|ABR47753.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 226 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 2/91 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDW 89 D G +K+IRK TQ+E+A ++ EN S + L E+ D Sbjct: 3 DFGKYLKEIRKGR-MTQRELAKRIGVGYPYISKIENNVEPPPSDDVLIKLAQALEVDVDE 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ + K+ + +K Sbjct: 62 LFVQANKIPKELKEIIMKQPKVLRLVRSIKE 92 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHL 169 G LK IRK + M+Q E K +G+ +S E P K+ Q + + Sbjct: 1 MNDFGKYLKEIRKGR-MTQRELAKRIGVGYPYISKIENNVEPPPSDDVLIKLAQALEVDV 59 Query: 170 DWIY 173 D ++ Sbjct: 60 DELF 63 >gi|183217341|gb|ACC59260.1| antitoxin PezA [Streptococcus pneumoniae] Length = 158 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK + TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|291484297|dbj|BAI85372.1| hypothetical protein BSNT_02805 [Bacillus subtilis subsp. natto BEST195] Length = 128 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 3/99 (3%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + PE + K +G RIK RKA N +Q+ +A + + +E G L L Sbjct: 1 MNPEEK---KRMGMRIKQCRKAINISQEALAERLEMKRTNIANYEAGRVIPPGNVILELS 57 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + ++ D++ D ++ +LK Sbjct: 58 KIFGVTTDFLLGSSDNPIGKLDPLDEDLRQIQRAKTKLK 96 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + +G R+K RK +SQ + L M + ++NYE GR IP ++ ++ Sbjct: 1 MNPEEKKRMGMRIKQCRKAINISQEALAERLEMKRTNIANYEAGRVIPPGNVILELSKIF 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 D++ + + K + + +++K K+S Sbjct: 61 GVTTDFLLGSSDNPIGKLDPLDEDLRQIQRAKTKLKNS 98 >gi|290473639|ref|YP_003466511.1| transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] gi|289172944|emb|CBJ79715.1| Transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] Length = 100 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI RK T +A + ++ +E G +I + + + + W + Sbjct: 8 VGKRICTKRKELGITATALAKQIGISQQQLSRYERGTNRININHLVVISKQLGTPISWFF 67 Query: 92 DGEVIDRRYEDVTNK 106 + D + + NK Sbjct: 68 EECFKDEKEDSTVNK 82 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+ + RK+ G++ K +G+ LS YE+G I I + + W + Sbjct: 10 KRICTKRKELGITATALAKQIGISQQQLSRYERGTNRININHLVVISKQLGTPISWFF 67 >gi|160939581|ref|ZP_02086929.1| hypothetical protein CLOBOL_04473 [Clostridium bolteae ATCC BAA-613] gi|158437372|gb|EDP15136.1| hypothetical protein CLOBOL_04473 [Clostridium bolteae ATCC BAA-613] Length = 366 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 +EY + E+ + + + T IK IR+ +Q+ + S+++ +E GM S Sbjct: 14 KEYGGEFSVEMIEARRVLKTNIKKIREVEGLSQEAFGKKYGKSMSSISNYETGMSLPSFE 73 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 + L LR +Y+ S + I+ K Sbjct: 74 FLLTLREQYDFSMEEFITSTDIEITKGGNQGAK 106 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 42/91 (46%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G++ + + + + +K IR+ +G+SQ FGK G S++SNYE G + Sbjct: 9 RGKMDKEYGGEFSVEMIEARRVLKTNIKKIREVEGLSQEAFGKKYGKSMSSISNYETGMS 68 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDEVIVPK 182 +P + +++ ++ ++ + K Sbjct: 69 LPSFEFLLTLREQYDFSMEEFITSTDIEITK 99 >gi|281355570|ref|ZP_06242064.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281318450|gb|EFB02470.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 185 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I RK N T KE + + + V+ E G+ + S+ + +IS ++ Sbjct: 6 IGRKIHQYRKDKNLTIKEFSDISGISTALVSQLERGIGNPSLSVLRLICRTLDISLSSLF 65 Query: 92 DGEVID 97 E+ + Sbjct: 66 FEEIDN 71 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG ++ RKDK ++ EF + G+ + +S E+G P + R I + Sbjct: 1 MIENRIGRKIHQYRKDKNLTIKEFSDISGISTALVSQLERGIGNPSLSVLRLICRTLDIS 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 L ++F +E+ I+RA Sbjct: 61 LSSLFF-EEIDNASLIRRA 78 >gi|167644301|ref|YP_001681964.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167346731|gb|ABZ69466.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 171 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 5/109 (4%) Query: 4 NPFLETSLKSLQEYTLIIT--PEIRQYWK---DVGTRIKDIRKANNKTQKEMAIGANQLE 58 PF +T PE R VG R++ RK +Q+ +A Sbjct: 12 EPFRLAPRLPTDAMETFVTDTPEARTPNVVDLHVGGRVRMRRKMLGISQEHLADALGLTF 71 Query: 59 SAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 V +E G S + ++ + ++G E + Sbjct: 72 QQVQKYERGANRVSASKLYEIAKTLQVPVSYFFEGLADPVTDEGDDAGE 120 Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E + +D + G ++ RK G+SQ LG+ + YE+G Sbjct: 26 ETFVTDTPEARTPNVVDLHVGGR-VRMRRKMLGISQEHLADALGLTFQQVQKYERGANRV 84 Query: 154 EIKPARKIKQVTKKHLDWIYFG 175 +I + + + + + G Sbjct: 85 SASKLYEIAKTLQVPVSYFFEG 106 >gi|90592682|ref|YP_529597.1| hypothetical protein CDBPCV119_gp46 [Clostridium phage phi CD119] gi|71482537|gb|AAX53474.1| hypothetical protein [Clostridium phage phi CD119] Length = 72 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK +RK N TQK+ A E A +E G ++ + + N+ +S D++ Sbjct: 6 DNIKLVRKQMNMTQKQFASLFGISERAYQYYEAGSREPNLETLILISNKLNVSTDFLL 63 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 23/63 (36%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +K +RK M+Q +F L G+ YE G P ++ I D Sbjct: 1 MTKFKDNIKLVRKQMNMTQKQFASLFGISERAYQYYEAGSREPNLETLILISNKLNVSTD 60 Query: 171 WIY 173 ++ Sbjct: 61 FLL 63 >gi|28867345|ref|NP_789964.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|302133575|ref|ZP_07259565.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850579|gb|AAO53659.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331018535|gb|EGH98591.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 199 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 19 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 66 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 7/90 (7%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 I R + LD +G RL+SIRK KG+SQ E K G+ NST+S E+ P Sbjct: 4 FISTRPDKNWGNIALD---VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPS 60 Query: 155 IKPARKIKQVT-KKHLDWIYFGDEVIVPKS 183 I RK V + + F E VP++ Sbjct: 61 ISSLRK---VLGGIPMSMVEFFSEETVPEN 87 >gi|58699289|ref|ZP_00374080.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] gi|58534197|gb|EAL58405.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] Length = 124 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 2/96 (2%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K +G RI+ R +Q+++ V +E+G + L + Sbjct: 7 IDKQIGERIRKRRLMCGFSQRDLGKKLEISFQHVQGYESGEIRLVVDRLYKLAEVLSVDM 66 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + + D + + I ++ RK Sbjct: 67 SYFFTKASEDLHDKAF--HSDVGSEEISRLVREYRK 100 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R G SQ + GK L + + YE G + K+ +V + + + Sbjct: 13 ERIRKRRLMCGFSQRDLGKKLEISFQHVQGYESGEIRLVVDRLYKLAEVLSVDMSYFFTK 72 Query: 176 -DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 E + K+ G++ + ++ + Sbjct: 73 ASEDLHDKAFHSDVGSEEISRLVREYRK 100 >gi|329915926|ref|ZP_08276315.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] gi|327544831|gb|EGF30214.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] Length = 355 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 4/90 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ RKA + +E+ ++V +E+ + + + L + ++ + Sbjct: 2 IGRRLSRARKAAGLSLREVGAQIGLTHASVKKYEDEQATPTSATLIKLARALNVRTEYFF 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E + + + L +LK+I Sbjct: 62 RPETVALDGIEYRKRSSL----PKKQLKAI 87 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG RL RK G+S E G +G+ ++++ YE + P K+ + ++ Sbjct: 1 MIGRRLSRARKAAGLSLREVGAQIGLTHASVKKYEDEQATPTSATLIKLARALNVRTEYF 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + V + R + + K+ K + Sbjct: 61 FRPETVALDGIEYRKRSSLPKKQLKAIEHE 90 >gi|325068599|ref|ZP_08127272.1| transcriptional regulator, XRE family protein [Actinomyces oris K20] Length = 76 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V RI +R +++E+A V E G + S+ AL + +++ + ++ Sbjct: 8 VHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFDVPVESVF 67 Query: 92 DGEVIDR 98 E R Sbjct: 68 SLEEFPR 74 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + + R+ +R D+ +S+ E + LG+ T+ E+G P + A +I + Sbjct: 1 MTMSDDFVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFD 60 Query: 167 KHLDWIYFGDE 177 ++ ++ +E Sbjct: 61 VPVESVFSLEE 71 >gi|323486406|ref|ZP_08091730.1| hypothetical protein HMPREF9474_03481 [Clostridium symbiosum WAL-14163] gi|323400218|gb|EGA92592.1| hypothetical protein HMPREF9474_03481 [Clostridium symbiosum WAL-14163] Length = 145 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 + + +N T +A A ++A++ +++G + S + + + +S D++ G+ Sbjct: 7 QLLQKHNVTSYRVAKEAGVTQTALSNWKSGRSTPSATTLQKIADYFGVSVDYLMTGKDEP 66 Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + D IG RL+ D Q Sbjct: 67 KEKSPELTAR--DERDIGRRLEKALSDLEGQQEAL 99 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 + + ++ K G+ + LSN++ GR+ P +KI +D++ G + Sbjct: 7 QLLQKHNVTSYRVAKEAGVTQTALSNWKSGRSTPSATTLQKIADYFGVSVDYLMTGKDEP 66 Query: 180 VPKSIK 185 KS + Sbjct: 67 KEKSPE 72 >gi|319412023|emb|CBY91956.1| putative transcriptional regulator [Streptococcus pneumoniae] Length = 158 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G IK +RK + TQ E A ++++ +ENG S S + ++ +S Sbjct: 2 IGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +KS+RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 D+++ P Sbjct: 61 VGEDKMLNP 69 >gi|312886574|ref|ZP_07746182.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311300977|gb|EFQ78038.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 258 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + IK +RK TQ++ A + S V +E + +E+S D Sbjct: 3 NISSNIKFLRKKKGLTQQQFADELDIKRSLVGAYEENRAEPKYDLLKKIALYFELSVDDF 62 Query: 91 YDGEVIDRRYEDVT 104 + + D+ Sbjct: 63 INEAIDDKWTPKPK 76 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I + +K +RK KG++Q +F L + S + YE+ R P+ +KI + +D Sbjct: 1 MSNISSNIKFLRKKKGLTQQQFADELDIKRSLVGAYEENRAEPKYDLLKKIALYFELSVD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 +E I K + KGN ++ + Sbjct: 61 DFI--NEAIDDKWTPKPKGNPANLR 83 >gi|326773541|ref|ZP_08232824.1| transcriptional regulator, HTH_3 family [Actinomyces viscosus C505] gi|326636771|gb|EGE37674.1| transcriptional regulator, HTH_3 family [Actinomyces viscosus C505] Length = 76 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V RI +R +++E+A V E G + S+ AL + +++ + ++ Sbjct: 8 VHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFDVPVESVF 67 Query: 92 DGEVIDR 98 E R Sbjct: 68 SLEEFPR 74 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + + R+ +R D+ +S+ E + LG+ T+ E+G P + A +I + Sbjct: 1 MTMSDDVVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFD 60 Query: 167 KHLDWIYFGDE 177 ++ ++ +E Sbjct: 61 VPVESVFSLEE 71 >gi|325681181|ref|ZP_08160711.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107103|gb|EGC01389.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 70 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K++R Q EM A ++ E G S S+ AL L + + I++ Sbjct: 5 NHLKEMRARLGVNQAEMGKLAGTSRQTISQIERGDYSPSVTLALKLAKICNVKVEDIFEY 64 Query: 94 EVIDRR 99 E + Sbjct: 65 EEDNNE 70 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK +R G++Q E GKL G T+S E+G P + A K+ ++ ++ Sbjct: 1 MPLKNHLKEMRARLGVNQAEMGKLAGTSRQTISQIERGDYSPSVTLALKLAKICNVKVED 60 Query: 172 IYFGDEV 178 I+ +E Sbjct: 61 IFEYEED 67 >gi|284006683|emb|CBA71944.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 220 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 27/85 (31%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G R+K +RK TQ + V +E + + L Sbjct: 1 MESIVKTLGQRLKYLRKLKKYTQVTLGKAIGVTGVTVGYWEKDLNEPGGKALSKLARALN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + +++ G+ + R Sbjct: 61 TTENYLLYGKNPGSVIPINNSNIRF 85 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +RK K +Q+ GK +G+ T+ +E+ P K K+ + +++ +G Sbjct: 10 QRLKYLRKLKKYTQVTLGKAIGVTGVTVGYWEKDLNEPGGKALSKLARALNTTENYLLYG 69 Query: 176 DEVIVPKSIKRAK 188 I + Sbjct: 70 KNPGSVIPINNSN 82 >gi|228953531|ref|ZP_04115575.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229079669|ref|ZP_04212202.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228703509|gb|EEL55962.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228806155|gb|EEM52730.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 184 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +VG +I+ RK T K +A A+ S ++ E G+ + S++ + I Sbjct: 5 NVGHKIRAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPL 61 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++++ RK G++ +L + S LS E+G T P ++ + I Sbjct: 1 MNDINVGHKIRAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 L-FNFFLEDTNTEELVVRANQRKK 83 >gi|86360696|ref|YP_472584.1| MerR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284798|gb|ABC93857.1| probable transcriptional regulator protein, MerR family [Rhizobium etli CFN 42] Length = 190 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 22/68 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ RK T ++A ++ ENG S S+ L + + Sbjct: 3 IGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTAFF 62 Query: 92 DGEVIDRR 99 R Sbjct: 63 RRYEEPRN 70 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG +++ RK G++ + G+ LS E G P + + + + L Sbjct: 1 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 60 Query: 172 IYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + +E +K +G + ++ + N Sbjct: 61 FFRRYEEPRNAVFVKAGQGVELERRGTRAGHQYN 94 >gi|300782967|ref|YP_003763258.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299792481|gb|ADJ42856.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 421 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 2/112 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG R++++R TQ+E+A G + V+ E G + S + + I D Sbjct: 3 ESVGERLRELRTERGLTQRELA-GPQYSAAYVSSVETGARTPSGDALRFFARQLGIDPDE 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 + G E + + + + L P Sbjct: 62 LLGGRSPRELIELDLELIETADRFLAGDARRA-TPRMQRIRRRAERLDRPRQ 112 Score = 43.8 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R ++G++Q E + +S+ E G P R + D + G Sbjct: 7 ERLRELRTERGLTQRELAGP-QYSAAYVSSVETGARTPSGDALRFFARQLGIDPDELLGG 65 >gi|300726245|ref|ZP_07059698.1| transcriptional regulator [Prevotella bryantii B14] gi|299776442|gb|EFI72999.1| transcriptional regulator [Prevotella bryantii B14] Length = 184 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R++ +R+ + +E+A E G S+ + Y Sbjct: 1 MEESIKLIGERLRGLREVLDIPAEEVAELCEISLDHYLKIEAGEADPSVYRLSKISKRYG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 I D + GE +T K + G K Sbjct: 61 IDLDVLLFGEEPRMNSYYLTRKGQGQEIDRGNDYK 95 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 30/86 (34%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R+ + E +L + E G P + KI + LD + FG Sbjct: 10 ERLRGLREVLDIPAEEVAELCEISLDHYLKIEAGEADPSVYRLSKISKRYGIDLDVLLFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + KG D K Sbjct: 70 EEPRMNSYYLTRKGQGQEIDRGNDYK 95 >gi|269976760|ref|ZP_06183735.1| transcriptional regulator [Mobiluncus mulieris 28-1] gi|306818115|ref|ZP_07451846.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|269934957|gb|EEZ91516.1| transcriptional regulator [Mobiluncus mulieris 28-1] gi|304649079|gb|EFM46373.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] Length = 65 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L ++RK G SQ + +LLG+ T+ + E+GR P + A I + ++ I+ Sbjct: 1 MKNNLVTLRKQAGWSQEKLAELLGVSRQTVISIEKGRFDPSLPLAFTIAKTFNCKIEDIF 60 Query: 174 FGDE 177 D+ Sbjct: 61 TPDD 64 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 22/62 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +RK +Q+++A V E G S+ A + + + I+ Sbjct: 3 NNLVTLRKQAGWSQEKLAELLGVSRQTVISIEKGRFDPSLPLAFTIAKTFNCKIEDIFTP 62 Query: 94 EV 95 + Sbjct: 63 DD 64 >gi|239939715|ref|ZP_04691652.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239986200|ref|ZP_04706864.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291443141|ref|ZP_06582531.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291346088|gb|EFE72992.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 190 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 25/73 (34%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ Q + + +K R T +A + + E + S+ + L + Sbjct: 2 SDLDQLTQSLARNLKRWRGERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADA 61 Query: 83 YEISFDWIYDGEV 95 ++ + D E Sbjct: 62 LGVAITTLLDHEQ 74 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 26/73 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK R ++G + G+ + EQ RT P + K+ + + Sbjct: 13 RNLKRWRGERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVAITTLLDH 72 Query: 176 DEVIVPKSIKRAK 188 ++ + + ++ Sbjct: 73 EQGPQVRLVPESR 85 >gi|227537268|ref|ZP_03967317.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242872|gb|EEI92887.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 30/76 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + +K IRK TQ++ A ++V +E + ++++ D + Sbjct: 3 NIASNLKYIRKKKGLTQQQFADLMEIKRASVGAYEEDRAEPKYELLKKIAEYFDLTMDEL 62 Query: 91 YDGEVIDRRYEDVTNK 106 + + D+ + Sbjct: 63 ANDSIDDKWKPTPRSN 78 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I + LK IRK KG++Q +F L+ + +++ YE+ R P+ + +KI + +D Sbjct: 1 MSNIASNLKYIRKKKGLTQQQFADLMEIKRASVGAYEEDRAEPKYELLKKIAEYFDLTMD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + ++ I K + N S+ + Sbjct: 61 EL--ANDSIDDKWKPTPRSNASNLR 83 >gi|325569186|ref|ZP_08145391.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157435|gb|EGC69595.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 135 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K+ R +Q+E+A ++++ +E G L L Y S D + Sbjct: 3 IGEALKNHRVTQQMSQEEVAKKILVTRTSISNWETGKTVPDSLNLLKLSTLYGCSVDELL 62 Query: 92 DGE 94 E Sbjct: 63 KKE 65 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 38/74 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG LK+ R + MSQ E K + + +++SN+E G+T+P+ K+ + +D Sbjct: 1 MTIGEALKNHRVTQQMSQEEVAKKILVTRTSISNWETGKTVPDSLNLLKLSTLYGCSVDE 60 Query: 172 IYFGDEVIVPKSIK 185 + + + K+ + Sbjct: 61 LLKKERAGMKKNFR 74 >gi|306821372|ref|ZP_07454980.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550590|gb|EFM38573.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 135 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS-IRYALYLRNEYEISFDWI 90 G ++K +R+ N TQ E+A V+ +E + + N ++++ +++ Sbjct: 3 FGKKLKALREDKNLTQSELAKILGITLKTVSNYETKDMRPRKMEMYEKMANFFDVNINYL 62 Query: 91 YDGEVI 96 E Sbjct: 63 LTEEDY 68 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE-IKPARKIKQVTKKHLD 170 G +LK++R+DK ++Q E K+LG+ T+SNYE P ++ K+ +++ Sbjct: 1 MGFGKKLKALREDKNLTQSELAKILGITLKTVSNYETKDMRPRKMEMYEKMANFFDVNIN 60 Query: 171 WIYFGDE 177 ++ ++ Sbjct: 61 YLLTEED 67 >gi|301382555|ref|ZP_07230973.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302063078|ref|ZP_07254619.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] Length = 182 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F E VP++ Sbjct: 58 MVEFFSEETVPEN 70 >gi|225181085|ref|ZP_03734532.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225168282|gb|EEG77086.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 64 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IKD+RK N Q+++A+ +N EN + ++ A+ L E + I+ Sbjct: 3 NKIKDLRKQKNLRQEDLALKLGVTRQTINAVENNKYNPTLELAMKLAKLLETPVEDIFQL 62 Query: 94 EV 95 E Sbjct: 63 ED 64 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 34/64 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K +RK K + Q + LG+ T++ E + P ++ A K+ ++ + ++ I+ Sbjct: 1 MKNKIKDLRKQKNLRQEDLALKLGVTRQTINAVENNKYNPTLELAMKLAKLLETPVEDIF 60 Query: 174 FGDE 177 ++ Sbjct: 61 QLED 64 >gi|187921899|ref|YP_001893488.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] gi|187720337|gb|ACD21559.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 79 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +R +Q +A AN S ++L E G S ++ L +S + Sbjct: 9 FGKALRSLRARRGMSQYSLANEANLDRSYISLLERGHRSPTLETMCSLAQALNVSIGEMI 68 Query: 92 D 92 Sbjct: 69 F 69 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 YA G L+S+R +GMSQ + S +S E+G P ++ + Q + Sbjct: 6 NYAFGKALRSLRARRGMSQYSLANEANLDRSYISLLERGHRSPTLETMCSLAQALNVSIG 65 Query: 171 WIYF 174 + F Sbjct: 66 EMIF 69 >gi|126652436|ref|ZP_01724608.1| Transcriptional regulator [Bacillus sp. B14905] gi|126590707|gb|EAZ84822.1| Transcriptional regulator [Bacillus sp. B14905] Length = 183 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 32/86 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + Q +++ ++K IR+ + + ++A ++ + E G + ++ + Sbjct: 1 MEQMSRNLAFQLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMR 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 ISF + + +D Sbjct: 61 ISFSSLLQPPTAHFMRYSGKDVPHVD 86 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +LK IR+ + +S + K G+ + L+ E+G P + KI + + Sbjct: 11 QLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMRISFSSLL 67 >gi|56695987|ref|YP_166341.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677724|gb|AAV94390.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 465 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++IR + TQK+ A +N EN S L L E+ + + Sbjct: 9 GAKLREIRNRLSLTQKDFAAKLGVSLPYLNQMENNNRPVSTSVVLALAQEFGLDVTELST 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + L +R Sbjct: 69 GDSERLVSDMREALADPIFADAMPPLADLR 98 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ IR ++Q +F LG+ L+ E + Q + Sbjct: 6 LYAGAKLREIRNRLSLTQKDFAAKLGVSLPYLNQMENNNRPVSTSVVLALAQEFGLDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSTGDSERLVSDMREA 81 >gi|163943351|ref|YP_001642581.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865548|gb|ABY46606.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 64 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 I+ +RK +Q+++A + +N EN ++ A L ++ D ++ + Sbjct: 5 IRILRKEKKLSQEDLAKLCHVSRQTINAIENNKYDPTLELAFNLAKSLGVTVDQLFIYK 63 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +RK+K +SQ + KL + T++ E + P ++ A + + +D ++ Sbjct: 1 MKNIIRILRKEKKLSQEDLAKLCHVSRQTINAIENNKYDPTLELAFNLAKSLGVTVDQLF 60 >gi|313110592|ref|ZP_07796475.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882977|gb|EFQ41571.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 193 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 22/69 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ +RK T ++A ++ ++ E S + L + I+ + Sbjct: 17 IARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLASGLGIALSELL 76 Query: 92 DGEVIDRRY 100 Sbjct: 77 GDTQAPAEP 85 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 33/94 (35%), Gaps = 1/94 (1%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 +D I RL ++RK++ ++ + + + + +S E+ ++ P Sbjct: 1 MDEKNPPGPLMDIDEL-IARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTAS 59 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGN 190 ++ L + + +RA+ Sbjct: 60 VLGRLASGLGIALSELLGDTQAPAEPLCRRAQQE 93 >gi|311069063|ref|YP_003973986.1| transcriptional regulator SinR [Bacillus atrophaeus 1942] gi|310869580|gb|ADP33055.1| transcriptional regulator SinR [Bacillus atrophaeus 1942] Length = 111 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 4/108 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK RK + E+A A +S ++ E + SI++ + ++S + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLKKVSAVLDVSVHTL 61 Query: 91 YDGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 D + D + + K D G K R+ + + Sbjct: 62 LDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQKWRKAQK 109 Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K RK+KG S E + G+ S LS+ E+ +T P I+ +K+ V + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLKKVSAVLDVSVHT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|257868206|ref|ZP_05647859.1| predicted protein [Enterococcus casseliflavus EC30] gi|257874521|ref|ZP_05654174.1| predicted protein [Enterococcus casseliflavus EC10] gi|257802320|gb|EEV31192.1| predicted protein [Enterococcus casseliflavus EC30] gi|257808685|gb|EEV37507.1| predicted protein [Enterococcus casseliflavus EC10] Length = 166 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K+ R+ N TQ +A + ++ +E G S + + + E +IS + + Sbjct: 9 LAMKLKEYREKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISLETLL 68 Query: 92 DGEVIDRRYEDVTNKKR 108 E + + K Sbjct: 69 LEETKKDNEDLKVSIKY 85 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +LK R+ ++Q +LL + + T+S +E G T P K KI + Sbjct: 4 MKETILAMKLKEYREKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDIS 63 Query: 169 LDWIYFGDEVIVPKSIKRA 187 L+ + + + +K + Sbjct: 64 LETLLLEETKKDNEDLKVS 82 >gi|229197048|ref|ZP_04323786.1| transcriptional regulator/TPR domain protein [Bacillus cereus m1293] gi|228586468|gb|EEK44548.1| transcriptional regulator/TPR domain protein [Bacillus cereus m1293] Length = 440 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 7/111 (6%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++G RI+ +R TQ E+ G + ++ E+G S + + + + Sbjct: 13 RESRKMEIGERIRYVRMHKGLTQGELVSGI-CSITYLSRIESGKIKPSSSFIKKVSKKLD 71 Query: 85 ISFDWIYDG--EVIDRRYEDVTNKKRLDPYAIGARLKSI----RKDKGMSQ 129 + D++ +G E I ++ NK + D A L + R+ + Sbjct: 72 VDSDYLINGNYEEIKITIFNICNKYKKDKSITEADLSLLELYVREVHHIPL 122 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 3/106 (2%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIP 153 + D + IG R++ +R KG++Q E + G+ + LS E G+ P Sbjct: 1 MADLVKSKKWLSRESRKMEIGERIRYVRMHKGLTQGEL--VSGICSITYLSRIESGKIKP 58 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 +K+ + D++ G+ + +I KS + Sbjct: 59 SSSFIKKVSKKLDVDSDYLINGNYEEIKITIFNICNKYKKDKSITE 104 >gi|257066078|ref|YP_003152334.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256797958|gb|ACV28613.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 304 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ +K +G ++ IR+A ++KE++ E + E G + + + N Sbjct: 3 LKDDYKFIGPDLRKIREAKGISRKEISEKVYVSEETIRRIEKGENDPRLSTLIPICNCLG 62 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 I + I + + ++ ++ ++ + + ++ R Sbjct: 63 IEIEDIINSSGFEYNNL-LSFRREINYHLNNSSIEKAR 99 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG L+ IR+ KG+S+ E + + + T+ E+G P + I + Sbjct: 6 DYKFIGPDLRKIREAKGISRKEISEKVYVSEETIRRIEKGENDPRLSTLIPICNCLGIEI 65 Query: 170 DWIY 173 + I Sbjct: 66 EDII 69 >gi|254512804|ref|ZP_05124870.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221532803|gb|EEE35798.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 200 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+D R+A T +E A S ++ EN S L ++S ++ Sbjct: 21 LGRSIRDARRAKGWTLEEAGRAAGIGRSTLSKIENNHTRPSFDIVRRLTQALDMSTPQLF 80 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 D R + ++ D A+G ++ R+ KG + E G+ G+ STLS E T P Sbjct: 3 EDIRNDGSAQEEPDDGAALGRSIRDARRAKGWTLEEAGRAAGIGRSTLSKIENNHTRPSF 62 Query: 156 KPARKIKQVTKKHLDWIY 173 R++ Q ++ Sbjct: 63 DIVRRLTQALDMSTPQLF 80 >gi|239820608|ref|YP_002947793.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805461|gb|ACS22527.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 81 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +GT IK +RK + +Q+E+A ++ S ++ E GM + + + + +S + Sbjct: 17 LGTAIKALRKTHGISQEELAHRSHVDRSYMSSIERGMQNPGVMTVVQIAAGLGVSVAEL 75 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G +K++RK G+SQ E + S +S+ E+G P + +I + Sbjct: 15 LALGTAIKALRKTHGISQEELAHRSHVDRSYMSSIERGMQNPGVMTVVQIAAGLGVSVAE 74 Query: 172 I 172 + Sbjct: 75 L 75 >gi|111222124|ref|YP_712918.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111149656|emb|CAJ61349.1| Putative transcriptional regulator [Frankia alni ACN14a] Length = 453 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G I+ R A +++Q+++ SA++ E G S + + N Sbjct: 4 TSNHDPTIGETIRLARLAAHQSQRQLGATLGYSASAISRLETGKSSLDLDTLRSIANVLH 63 Query: 85 ISFDWI 90 I + + Sbjct: 64 IPPEQL 69 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ R SQ + G LG S +S E G++ ++ R I V + + Sbjct: 13 ETIRLARLAAHQSQRQLGATLGYSASAISRLETGKSSLDLDTLRSIANVLHIPPEQL 69 >gi|53725908|ref|YP_103548.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|67643822|ref|ZP_00442565.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|121601001|ref|YP_992298.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124383395|ref|YP_001026857.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126450501|ref|YP_001079856.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|166999969|ref|ZP_02265798.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254175449|ref|ZP_04882109.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254202232|ref|ZP_04908595.1| DNA-binding protein [Burkholderia mallei FMH] gi|254207565|ref|ZP_04913915.1| DNA-binding protein [Burkholderia mallei JHU] gi|52429331|gb|AAU49924.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121229811|gb|ABM52329.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124291415|gb|ABN00684.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126243371|gb|ABO06464.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147746479|gb|EDK53556.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751459|gb|EDK58526.1| DNA-binding protein [Burkholderia mallei JHU] gi|160696493|gb|EDP86463.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|238525262|gb|EEP88690.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243064084|gb|EES46270.1| DNA-binding protein [Burkholderia mallei PRL-20] Length = 187 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +RK T +A +S ++ E G+ SI AL L ++ + ++ Sbjct: 4 RLKLLRKQKEWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 38/83 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +RK K + + G+ S LS E+G ++P I A K+ + + ++ ++ Sbjct: 5 LKLLRKQKEWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEGR 64 Query: 178 VIVPKSIKRAKGNQSSKKSKKDK 200 ++ RA S ++ ++ Sbjct: 65 DRELITVTRASERTSMGRASSER 87 >gi|332311708|gb|EGJ24803.1| Helix-turn-helix domain protein [Listeria monocytogenes str. Scott A] Length = 141 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 1/86 (1%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNE 82 + + ++ R+ +R+ ++ E A S +E G+ + + Sbjct: 6 KRSEIMPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATL 65 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKR 108 Y++S D++ + I ++ Sbjct: 66 YDVSVDYLLGQQSIPTYAPSELQNEK 91 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPAR 159 K+ + RL +R+ +G S+ E + LG+ ST N+E G P+++ Sbjct: 1 MYNQTKRSEIMPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVT 60 Query: 160 KIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 +I + +D++ G + I + + + K Sbjct: 61 QIATLYDVSVDYLL-GQQSIPTYAPSELQNEKDIGKR 96 >gi|254516541|ref|ZP_05128600.1| transcriptional regulator, XRE family [gamma proteobacterium NOR5-3] gi|219674964|gb|EED31331.1| transcriptional regulator, XRE family [gamma proteobacterium NOR5-3] Length = 186 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ +R+ + T +++A + S ++ E + ++ + + IS + Sbjct: 9 LGERVSQLRQLQSMTLEQLAAASGVSRSMLSQIERCKANPTLAVTQRIAQTFGISIGELV 68 Query: 92 DGEVID 97 D Sbjct: 69 DDPNAS 74 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R+ + M+ + G+ S LS E+ + P + ++I Q + + D+ Sbjct: 15 QLRQLQSMTLEQLAAASGVSRSMLSQIERCKANPTLAVTQRIAQTFGISIGELV--DDPN 72 Query: 180 VPKSIKRAKGNQS 192 SI +G+ Sbjct: 73 ASASIDVVRGDDP 85 >gi|206973491|ref|ZP_03234411.1| conserved domain protein [Bacillus cereus AH1134] gi|229181778|ref|ZP_04309089.1| Transcriptional regulator [Bacillus cereus 172560W] gi|206731581|gb|EDZ48783.1| conserved domain protein [Bacillus cereus AH1134] gi|228601695|gb|EEK59205.1| Transcriptional regulator [Bacillus cereus 172560W] Length = 65 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R TQ+E+A N ++L E+ + S++ +++ + S D ++ Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKLFWE 63 Query: 94 EV 95 E Sbjct: 64 EN 65 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R +KG++Q E ++ + T+S E + P +K I + K LD + Sbjct: 1 MSVSKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKL 60 Query: 173 YFGD 176 ++ + Sbjct: 61 FWEE 64 >gi|217975318|ref|YP_002360069.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217500453|gb|ACK48646.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 104 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLE----SAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 R+K+ R TQ ++ + S +N +E G + I + +E + ++ Sbjct: 9 KRLKEARTKAGITQADLGAKIGIHQNSASSRMNHYELGRHTPDINTLQRIADELGVPLNY 68 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + D + ++L A +K + Sbjct: 69 FFCED--DASAKLACLIEQLPKEQKIALIKKL 98 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPN----STLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK R G++Q + G +G+ S +++YE GR P+I ++I L+ Sbjct: 8 PKRLKEARTKAGITQADLGAKIGIHQNSASSRMNHYELGRHTPDINTLQRIADELGVPLN 67 Query: 171 WIYFGDEVIVP 181 + + D+ Sbjct: 68 YFFCEDDASAK 78 >gi|126730936|ref|ZP_01746745.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126708652|gb|EBA07709.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 130 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 34/91 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ R+A +Q+ +A + + +E+ + + +S W+ Sbjct: 14 LGDRLAAAREAQGMSQETLAKNLGIKLTTLERWEDDLSEPRANKLSMVAGILNVSMVWLI 73 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 GE + D I A ++++R Sbjct: 74 TGEGEGVGNPEEDTTMGADFTEILAEMRALR 104 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G RL + R+ +GMSQ K LG+ +TL +E + P + + + Sbjct: 10 DVATLGDRLAAAREAQGMSQETLAKNLGIKLTTLERWEDDLSEPRANKLSMVAGILNVSM 69 Query: 170 DWIYFGD 176 W+ G+ Sbjct: 70 VWLITGE 76 >gi|114800095|ref|YP_759955.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740269|gb|ABI78394.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 479 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G R++ +R+ TQ +MA S +NL E S L L Y+ Sbjct: 10 IGPRVRRLRRTLGITQAQMAEDLGVSASYINLIEANQRPISANLLLTLARVYDFDI 65 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 23/54 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ +R+ G++Q + + LG+ S ++ E + + +V + Sbjct: 14 VRRLRRTLGITQAQMAEDLGVSASYINLIEANQRPISANLLLTLARVYDFDISD 67 >gi|85701408|ref|YP_459993.1| helix-turn-helix Cro and cI family protein [Bacillus phage WBeta] gi|89152506|ref|YP_512337.1| transcription regulator [Bacillus phage Fah] gi|76445729|gb|ABA42719.1| transcription regulator [Bacillus phage Fah] gi|76564034|gb|ABA46423.1| transcriptional regulator, putative [Bacillus phage Cherry] gi|81097471|gb|ABB55414.1| putative transcriptional regulator [Bacillus phage Gamma] gi|83658644|gb|ABC40428.1| helix-turn-helix Cro and cI family protein [Bacillus phage WBeta] Length = 118 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +R+ N TQ ++ +V+ FE G S + + D++ G Sbjct: 8 DRLRQLRRERNLTQHDLGQAIGVTAGSVSKFETGFKPASRETVERAADFLGVPVDYLL-G 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 R + N+K L +L Sbjct: 67 RSDSRELDADMNQKYLHIKNRLEQL 91 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 30/65 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + RL+ +R+++ ++Q + G+ +G+ ++S +E G + + Sbjct: 1 MIIVEFKDRLRQLRRERNLTQHDLGQAIGVTAGSVSKFETGFKPASRETVERAADFLGVP 60 Query: 169 LDWIY 173 +D++ Sbjct: 61 VDYLL 65 >gi|260060996|ref|YP_003194076.1| DNA-binding protein [Robiginitalea biformata HTCC2501] gi|88785128|gb|EAR16297.1| DNA-binding protein [Robiginitalea biformata HTCC2501] Length = 64 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 34/64 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R +K +Q + +G+ T++ E+ + P + A +I ++ +K ++ I+ Sbjct: 1 MKNTIRVLRAEKNWTQEQLASAIGVSRQTINAIEKEKFDPSLPTAFRIARLFEKPIEAIF 60 Query: 174 FGDE 177 +E Sbjct: 61 TFEE 64 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I+ +R N TQ+++A +N E S+ A + +E + I+ E Sbjct: 5 IRVLRAEKNWTQEQLASAIGVSRQTINAIEKEKFDPSLPTAFRIARLFEKPIEAIFTFEE 64 >gi|324997834|ref|ZP_08118946.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 187 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E VG R++ R A+ + +A A + +++ ENG + ++ L N Sbjct: 2 EDAALRAAVGERLRSARTAHGLSVGALAARAGIGKGSLSELENGSRNPTLSTLYALANTL 61 Query: 84 EISFDWIY 91 + + Sbjct: 62 GLPVSHLL 69 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RL+S R G+S G+ +LS E G P + + + + Sbjct: 9 AVGERLRSARTAHGLSVGALAARAGIGKGSLSELENGSRNPTLSTLYALANTLGLPVSHL 68 Query: 173 YF---GDEVIVP 181 G EV P Sbjct: 69 LAETVGAEVGAP 80 >gi|289432135|ref|YP_003462008.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|288945855|gb|ADC73552.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 133 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 1/76 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 D G ++ +R+A + +EMA S + ENG L Y + Sbjct: 3 DFGEYLRKLREAQKLSLREMAAKTGVSVSYITQIENGKRKAPGPEVLKKLAPAYNVPVRE 62 Query: 90 IYDGEVIDRRYEDVTN 105 + ++ + Sbjct: 63 LLKAAGYMDDVKEFKS 78 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHL 169 G L+ +R+ + +S E G+ S ++ E G+ P + +K+ + Sbjct: 1 MNDFGEYLRKLREAQKLSLREMAAKTGVSVSYITQIENGKRKAPGPEVLKKLAPAYNVPV 60 Query: 170 DWIYF 174 + Sbjct: 61 RELLK 65 >gi|259417133|ref|ZP_05741052.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259346039|gb|EEW57853.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 188 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 2/103 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + R+K+ R+A + + +A + S V+ E G S +I L Sbjct: 1 MTDTTDDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLT 60 Query: 81 NEYEISFDWIYDGEV--IDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ F + + + +D A + + Sbjct: 61 RALQVDFAGLLEASETVDRVDVLRARDVPVIDSKAAQCTIAIL 103 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ +G+S L G+ S +S E+G + P I + + + + Sbjct: 13 PARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72 Query: 175 GDEVIVPKSIKRAK 188 E + + RA+ Sbjct: 73 ASETVDRVDVLRAR 86 >gi|239820588|ref|YP_002947773.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805441|gb|ACS22507.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 67 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +GT IK +RK + +Q+E+A ++ S ++ E GM + + + + +S + Sbjct: 3 LGTAIKALRKTHGISQEELAHRSHIDRSYMSSIERGMQNPGVMTVVQIAAGLGVSVAEL 61 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G +K++RK G+SQ E + S +S+ E+G P + +I + Sbjct: 1 MALGTAIKALRKTHGISQEELAHRSHIDRSYMSSIERGMQNPGVMTVVQIAAGLGVSVAE 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|167758509|ref|ZP_02430636.1| hypothetical protein CLOSCI_00849 [Clostridium scindens ATCC 35704] gi|167663705|gb|EDS07835.1| hypothetical protein CLOSCI_00849 [Clostridium scindens ATCC 35704] Length = 72 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R ++ TQ ++A + +E G + Y + L N Y S D+I Sbjct: 4 QRIEDLRIDHDLTQNDIAKILSCQREVYRRYEKGSRQIPVDYLIKLANYYGCSTDYILGL 63 Query: 94 EVIDRRYED 102 Y Sbjct: 64 TDRKTPYPK 72 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R D ++Q + K+L YE+G + K+ D+I Sbjct: 1 MKFQRIEDLRIDHDLTQNDIAKILSCQREVYRRYEKGSRQIPVDYLIKLANYYGCSTDYI 60 Query: 173 YFGDEVIVP 181 + P Sbjct: 61 LGLTDRKTP 69 >gi|167832382|ref|YP_001686773.1| prophage repressor [Halomonas phage phiHAP-1] gi|166836356|gb|ABY90405.1| prophage repressor [Halomonas phage phiHAP-1] Length = 234 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 2/77 (2%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGAN--QLESAVNLFENGMCSTSIRYA 76 L+ D+G+ I+ +R+ T +E+ ++ E + S+ Sbjct: 2 LLCRFREENCRMDIGSAIRHLRRQQGLTLQELCDAIGNDMQTGYLSRVETNKLNPSVYTV 61 Query: 77 LYLRNEYEISFDWIYDG 93 + + D + G Sbjct: 62 ADIARALGTTVDELLKG 78 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 2/78 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNST--LSNYEQGRTIPEIKPARKIKQVTKKHL 169 IG+ ++ +R+ +G++ E +G T LS E + P + I + + Sbjct: 13 MDIGSAIRHLRRQQGLTLQELCDAIGNDMQTGYLSRVETNKLNPSVYTVADIARALGTTV 72 Query: 170 DWIYFGDEVIVPKSIKRA 187 D + G +A Sbjct: 73 DELLKGSNTFHAYKETKA 90 >gi|139440031|ref|ZP_01773344.1| Hypothetical protein COLAER_02383 [Collinsella aerofaciens ATCC 25986] gi|133774653|gb|EBA38473.1| Hypothetical protein COLAER_02383 [Collinsella aerofaciens ATCC 25986] Length = 78 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 28/70 (40%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + K G R K++R +Q++ A S E G + S+ + + + Sbjct: 7 DTKTLQKSFGMRCKELRAGLGCSQEQFANLIEMDRSYYASIEVGRRNVSLSNLKKIADVF 66 Query: 84 EISFDWIYDG 93 +I+ + G Sbjct: 67 QITISELMRG 76 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 K +R G SQ +F L+ M S ++ E GR + +KI V + + + G E Sbjct: 20 KELRAGLGCSQEQFANLIEMDRSYYASIEVGRRNVSLSNLKKIADVFQITISELMRGVE 78 >gi|86137152|ref|ZP_01055730.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85826476|gb|EAQ46673.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 187 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ IR A + + A ++ + E G S +I + + + + Sbjct: 6 IGANLRKIRNAAGLSLSKAADLTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALI 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D+ V + P +I ++ Sbjct: 66 GAPDADQPDPAVAFETVQFPGSIAVKI 92 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IGA L+ IR G+S + L G+ + L E+G + P I KI + Sbjct: 1 MTEDIIGANLRKIRNAAGLSLSKAADLTGVSKAMLGQIERGESSPTIATLWKIAKGFHLP 60 Query: 169 LDWIYFGDEVIVP 181 L + + P Sbjct: 61 LTALIGAPDADQP 73 >gi|84501573|ref|ZP_00999745.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84390194|gb|EAQ02753.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 466 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 37/119 (31%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++ R+ TQK+ A +N EN S L L E+ + Sbjct: 9 GAKLRETRQRLGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLSLAQEFGFDVTELST 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G+ + + L IR + + + + +E+ + Sbjct: 69 GDSERLVSDMREAMADPVLADVAPPLADIRLTASNAPALARAFIHLHRAYRQTHERLAS 127 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ R+ G++Q +F LG+ L+ E + Q + Sbjct: 6 LYAGAKLRETRQRLGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLSLAQEFGFDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSTGDSERLVSDMREA 81 >gi|119383229|ref|YP_914285.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119372996|gb|ABL68589.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 204 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 33/78 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +R+ + A S ++ EN S ++ L + +++ + ++ G Sbjct: 16 ERLRALRERKGWSLNRAAEEVGVPPSTLSRIENRKMSPTLDLLLKIVRTFDMHPNDVFSG 75 Query: 94 EVIDRRYEDVTNKKRLDP 111 + ++++ + DP Sbjct: 76 RPDQQEKQEISVSRASDP 93 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+++R+ KG S + +G+P STLS E + P + KI + H + ++ Sbjct: 15 PERLRALRERKGWSLNRAAEEVGVPPSTLSRIENRKMSPTLDLLLKIVRTFDMHPNDVFS 74 Query: 175 GDEVIVPK---SIKRAKGNQSSKKSKKDKKSSNP 205 G K S+ RA + K +P Sbjct: 75 GRPDQQEKQEISVSRASDPALIELPNLFYKHLHP 108 >gi|228989568|ref|ZP_04149552.1| hypothetical protein bpmyx0001_3400 [Bacillus pseudomycoides DSM 12442] gi|228770105|gb|EEM18685.1| hypothetical protein bpmyx0001_3400 [Bacillus pseudomycoides DSM 12442] Length = 83 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 33/81 (40%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q YT I+ ++ KDV +I +R N+ +Q +A +N EN S+ Sbjct: 3 QIYTDIVKIILQARRKDVKNQIYALRTENHISQGALADKCKVSRQTINAIENNKYDPSLA 62 Query: 75 YALYLRNEYEISFDWIYDGEV 95 A L + D ++ + Sbjct: 63 LAFRLAEVLGTTVDKLFLYKQ 83 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 26/59 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ ++R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 21 KNQIYALRTENHISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|228994924|ref|ZP_04154702.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764826|gb|EEM13602.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 115 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 8/114 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG IK+ RK+ TQ++++ + +E + L + + S D + Sbjct: 5 VGQNIKNFRKSFGLTQEQLSDRTGLSRGQIKNWEVDRHEPDLESLKVLASFFNTSIDRLL 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 + + ++ + G Q F K + + L N Sbjct: 65 SFKNEKEDALLELLFNDVQ--------RAYEELDGRQQGRFAKQVSLYVKMLQN 110 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 28/70 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K+ RK G++Q + G+ + N+E R P+++ + + +D + Sbjct: 7 QNIKNFRKSFGLTQEQLSDRTGLSRGQIKNWEVDRHEPDLESLKVLASFFNTSIDRLLSF 66 Query: 176 DEVIVPKSIK 185 ++ Sbjct: 67 KNEKEDALLE 76 >gi|228989826|ref|ZP_04149806.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228996017|ref|ZP_04155672.1| Transcriptional regulator [Bacillus mycoides Rock3-17] gi|229003633|ref|ZP_04161448.1| Transcriptional regulator [Bacillus mycoides Rock1-4] gi|228757599|gb|EEM06829.1| Transcriptional regulator [Bacillus mycoides Rock1-4] gi|228763713|gb|EEM12605.1| Transcriptional regulator [Bacillus mycoides Rock3-17] gi|228769973|gb|EEM18556.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 72 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++IK R + TQ+++A ++L E G + S+ L + + + ++ Sbjct: 10 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNQTLNDLF 67 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R ++Q + + +G+ T+S E+G+ P + KI + L+ +++ D+ Sbjct: 12 IKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNQTLNDLFWEDK 71 Query: 178 V 178 Sbjct: 72 E 72 >gi|227358477|ref|ZP_03842803.1| Cro repressor protein [Proteus mirabilis ATCC 29906] gi|227161279|gb|EEI46350.1| Cro repressor protein [Proteus mirabilis ATCC 29906] Length = 69 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE-----ISFD 88 I RK TQ ++A + V+ +ENG + L + + ++ D Sbjct: 2 NNISRYRKKLGITQNDLAKELGCTKGNVSHYENGRRKADLDVCRKLVDFFNKKGVKVTID 61 Query: 89 WIYDGE 94 ++ + Sbjct: 62 DLFPPK 67 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK-----KHL 169 + RK G++Q + K LG +S+YE GR ++ RK+ + Sbjct: 1 MNNISRYRKKLGITQNDLAKELGCTKGNVSHYENGRRKADLDVCRKLVDFFNKKGVKVTI 60 Query: 170 DWIY 173 D ++ Sbjct: 61 DDLF 64 >gi|222086297|ref|YP_002544830.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221723745|gb|ACM26901.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 267 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G +++ R+ +Q E A+ A + ++ E+G S ++L ++ Sbjct: 6 RSLGDYLREWRQRRRLSQLEFALEAEISQRHLSFIESGRALPSRDMLMHLAERLDVPL 63 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + ++G L+ R+ + +SQ+EF + LS E GR +P + + Sbjct: 1 MMMPARSLGDYLREWRQRRRLSQLEFALEAEISQRHLSFIESGRALPSRDMLMHLAERLD 60 Query: 167 KHL 169 L Sbjct: 61 VPL 63 >gi|15963764|ref|NP_384117.1| hypothetical protein SMc02783 [Sinorhizobium meliloti 1021] gi|307302567|ref|ZP_07582324.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307316102|ref|ZP_07595546.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15072939|emb|CAC41398.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] gi|306897942|gb|EFN28684.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903237|gb|EFN33827.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 125 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G ++++R+ +QKEMA + ++ E+G + S + + + + +D Sbjct: 4 FGEAVRELRRRKGVSQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNVIWDE 62 Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 G ++ +R+ KG+SQ E +G+ + LS E G+ P +++ Sbjct: 1 MTPFGEAVRELRRRKGVSQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNVIW 60 Query: 168 -HLDWIYFGDEVIVPKSIKRAKG 189 D ++ + PK + G Sbjct: 61 DEADELFRIAHLSDPKVVLDTSG 83 >gi|85708592|ref|ZP_01039658.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] gi|85690126|gb|EAQ30129.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] Length = 64 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q E+A + AVN E G S+ A + +E+ + I+D Sbjct: 3 NRLKVLRAERDWSQAELAGRLDVSRQAVNAIETGKHDPSLPLAFRIARLFEMGIEEIFDD 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ E L + ++ E G+ P + A +I ++ + ++ I+ Sbjct: 1 MKNRLKVLRAERDWSQAELAGRLDVSRQAVNAIETGKHDPSLPLAFRIARLFEMGIEEIF 60 Query: 174 FGD 176 + Sbjct: 61 DDE 63 >gi|256425817|ref|YP_003126470.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256040725|gb|ACU64269.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 250 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 31/85 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K +RK TQ+E A S + +E + + + IS D + Sbjct: 6 RNLKFLRKQKGWTQQEFADKLGIKRSLLGAYEEERAEPRTEVLELVSDMFRISIDDLLRR 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 +V ++ + +++ + + Sbjct: 66 DVGSQKESFLEKRRQQKMGSDRQVI 90 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +RK KG +Q EF LG+ S L YE+ R P + + + + +D + Sbjct: 6 RNLKFLRKQKGWTQQEFADKLGIKRSLLGAYEEERAEPRTEVLELVSDMFRISIDDLLRR 65 Query: 176 DEVIVPKSIKRAKGNQS 192 D +S + Q Sbjct: 66 DVGSQKESFLEKRRQQK 82 >gi|211639114|emb|CAR67726.1| transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639120|emb|CAR67732.1| Putative phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] Length = 128 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 29/84 (34%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + R+K+ R+A TQ +A N N +E G + + + + Sbjct: 11 EEDMQLFAKRLKEAREARKMTQARLAELLNVDRRVYNRWERGASVPQLDAVVRIAQVLQS 70 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRL 109 S D + E + + L Sbjct: 71 SLDALVGLEPMAPPQIHNPRLQAL 94 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D RLK R+ + M+Q +LL + + +E+G ++P++ +I QV + L Sbjct: 13 DMQLFAKRLKEAREARKMTQARLAELLNVDRRVYNRWERGASVPQLDAVVRIAQVLQSSL 72 Query: 170 DWIYFGDEVIVPK 182 D + + + P+ Sbjct: 73 DALVGLEPMAPPQ 85 >gi|114765017|ref|ZP_01444164.1| DNA binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114542564|gb|EAU45589.1| DNA binding protein, putative [Roseovarius sp. HTCC2601] Length = 189 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+K+ R+A + +A + S V+ E G + ++ L ++ F + + Sbjct: 16 RLKEARQARGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRALQVDFAGLLE 73 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK R+ +G+S KL G+ S +S E+G + P + + + + + Sbjct: 17 LKEARQARGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRALQVDFAGLL 72 >gi|89095957|ref|ZP_01168851.1| hypothetical protein B14911_04469 [Bacillus sp. NRRL B-14911] gi|89089703|gb|EAR68810.1| hypothetical protein B14911_04469 [Bacillus sp. NRRL B-14911] Length = 292 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+D+RK +QKE+A G ++ ++ E G + + + ++ + Sbjct: 6 IGQKIRDLRKLLGLSQKELAEGI-CTQAQISKIEKGDVYPYASTLYLISQKLGVDVNYFF 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 R + +++L+ +++R Sbjct: 65 HIGTTPRLDYILEVERQLEITRRSFDYETMR 95 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D AIG +++ +RK G+SQ E + + + +S E+G P I Q Sbjct: 1 MDFSAIGQKIRDLRKLLGLSQKELAEGI-CTQAQISKIEKGDVYPYASTLYLISQKLGVD 59 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 +++ + I + + D ++ Sbjct: 60 VNYFFHIGTTPRLDYILEVERQLEITRRSFDYET 93 >gi|323483358|ref|ZP_08088747.1| hypothetical protein HMPREF9474_00496 [Clostridium symbiosum WAL-14163] gi|323691141|ref|ZP_08105421.1| hypothetical protein HMPREF9475_00282 [Clostridium symbiosum WAL-14673] gi|323403337|gb|EGA95646.1| hypothetical protein HMPREF9474_00496 [Clostridium symbiosum WAL-14163] gi|323504838|gb|EGB20620.1| hypothetical protein HMPREF9475_00282 [Clostridium symbiosum WAL-14673] Length = 120 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K++RK N Q+++A + V+ E S SI + L + +S D++ Sbjct: 16 KLKELRKRRNLIQEQLADEIGTSQQTVSRVEKDKLSMSIETLIRLTVYFNVSADYML 72 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 31/82 (37%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 D +LK +RK + + Q + +G T+S E+ + I+ ++ Sbjct: 1 MGKKTSVEDLLKADGKLKELRKRRNLIQEQLADEIGTSQQTVSRVEKDKLSMSIETLIRL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKS 183 D++ +++ P+ Sbjct: 61 TVYFNVSADYMLGISDLVQPED 82 >gi|323128283|gb|ADX25580.1| XRE family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 155 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++KD R N TQ ++A + ++ +ENG S R L + + S + + Sbjct: 7 LALKLKDYRDKNGLTQAQLAEQLEVSDKTISKWENGETYPSKRNMLAISEKLHFSLEALM 66 Query: 92 DGEVIDRRYEDVTNKKR 108 E + + K Sbjct: 67 IEETQVKTDYRKLSFKY 83 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK R G++Q + + L + + T+S +E G T P + I + L+ + + Sbjct: 11 LKDYRDKNGLTQAQLAEQLEVSDKTISKWENGETYPSKRNMLAISEKLHFSLEALMIEET 70 Query: 178 VIVPKSIK 185 + K Sbjct: 71 QVKTDYRK 78 >gi|295107448|emb|CBL04991.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I+ RK+ TQ ++A E AV +E+G+ + + +S + + Sbjct: 3 VGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESISAALGVSVNAL 61 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ RK +GM+Q + + +G+ + +YE G + + I ++ Sbjct: 1 MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESISAALGVSVNA 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|261419589|ref|YP_003253271.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297530435|ref|YP_003671710.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|319766405|ref|YP_004131906.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|261376046|gb|ACX78789.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|297253687|gb|ADI27133.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] gi|317111271|gb|ADU93763.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 97 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q + +IK RK N +Q+E+A +S + E G+ S + + Sbjct: 21 QLEGTIAAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 A++K+ RK MSQ E +G+P ST+ E G T P ++ KI Q Sbjct: 28 AQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|226309394|ref|YP_002769354.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226188511|dbj|BAH36615.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 137 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 34/85 (40%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + GE K L A G L+ +R+D+ + + +GM LS E+G Sbjct: 24 LVKGESELPDPAVAVRKPPLIREAYGRVLREVRRDQDRTLDDVAAKVGMSKQYLSEIERG 83 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYF 174 + P + R I + L+ + F Sbjct: 84 KKEPSSEILRAICEALGMPLEHLLF 108 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P IR+ + G ++++R+ ++T ++A + ++ E G S + Sbjct: 41 PPLIREAY---GRVLREVRRDQDRTLDDVAAKVGMSKQYLSEIERGKKEPSSEILRAICE 97 Query: 82 EYEISFDWIYDG 93 + + + Sbjct: 98 ALGMPLEHLLFR 109 >gi|225390253|ref|ZP_03759977.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme DSM 15981] gi|225043678|gb|EEG53924.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme DSM 15981] Length = 195 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 36/93 (38%) Query: 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 ++ + + Q + V IK +R+ + E++ + +S + E G + +I Sbjct: 5 MSMERSAFLDQMNQIVAKNIKRLREERKLSMDELSKLSGVSKSMLAQIERGGGNPTISTL 64 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + N ++ FD + ++ + L Sbjct: 65 WKISNGMKVPFDALTVRPKSPYELVKTSDLQPL 97 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Query: 97 DRRYEDVTNKKRLDPYA--IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + LD + +K +R+++ +S E KL G+ S L+ E+G P Sbjct: 1 MCDIMSMERSAFLDQMNQIVAKNIKRLREERKLSMDELSKLSGVSKSMLAQIERGGGNPT 60 Query: 155 IKPARKIKQVTKKHLDWI 172 I KI K D + Sbjct: 61 ISTLWKISNGMKVPFDAL 78 >gi|197302440|ref|ZP_03167495.1| hypothetical protein RUMLAC_01168 [Ruminococcus lactaris ATCC 29176] gi|197298338|gb|EDY32883.1| hypothetical protein RUMLAC_01168 [Ruminococcus lactaris ATCC 29176] Length = 130 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + + +R+ ++ TQK++ N A + +E G +I L Y S + + Sbjct: 11 QLAKNLLQLRQEHHYTQKQLGDKLNITHQAYSYYETGHRDPNIDMLTKLSALYGFSIEQL 70 Query: 91 YD 92 Sbjct: 71 LT 72 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + L + L +R++ +Q + G L + + S YE G P I K+ Sbjct: 1 MQGGTALANIQLAKNLLQLRQEHHYTQKQLGDKLNITHQAYSYYETGHRDPNIDMLTKLS 60 Query: 163 QVTKKHLDWIYF 174 + ++ + Sbjct: 61 ALYGFSIEQLLT 72 >gi|169351319|ref|ZP_02868257.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] gi|169291541|gb|EDS73674.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] Length = 212 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +++IRK +GM Q E +G+ +LS E+G P + KI +V Sbjct: 6 MKISHLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVT 65 Query: 169 LDWIYFGDEVIVPKSIKR 186 + + G+ V +S K Sbjct: 66 PNELLSGEWKYVNQSEKE 83 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK Q+E+A +++ E G+ + + +++ + + Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 Query: 92 DGE 94 GE Sbjct: 71 SGE 73 >gi|37527450|ref|NP_930794.1| hypothetical protein plu3581 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527459|ref|NP_930803.1| hypothetical protein plu3590 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786885|emb|CAE15954.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786894|emb|CAE15963.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 128 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 30/89 (33%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + TR+K+ R+A TQ +A N N +E G + + + + Sbjct: 11 EEDMQLFATRLKEAREARKMTQARLAELLNVDRRVYNRWERGASVPQLDAVVRIAQVLQS 70 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAI 114 S D + E + + L Sbjct: 71 SLDSLVGLEPMTPPQIHNPRLQALVMQMD 99 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D RLK R+ + M+Q +LL + + +E+G ++P++ +I QV + L Sbjct: 13 DMQLFATRLKEAREARKMTQARLAELLNVDRRVYNRWERGASVPQLDAVVRIAQVLQSSL 72 Query: 170 DWIYFGDEVIVPK 182 D + + + P+ Sbjct: 73 DSLVGLEPMTPPQ 85 >gi|330964277|gb|EGH64537.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 182 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F E VP++ Sbjct: 58 MVEFFSEETVPEN 70 >gi|330957317|gb|EGH57577.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 182 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R++ IRK +Q+E+A A S +++ E S SI + + +S Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEF 61 Query: 91 YDGEVIDRRYEDV 103 + E + V Sbjct: 62 FSEETVPENSAQV 74 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLSGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F E VP++ Sbjct: 58 MVEFFSEETVPEN 70 >gi|328475108|gb|EGF45892.1| hypothetical protein LM220_00660 [Listeria monocytogenes 220] Length = 114 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D++ + I ++ Sbjct: 61 DYLLGQQSIPTYAPSELQNEK 81 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P+++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATLYDVSVDYLL- 64 Query: 175 GDEVIVPKSIKRAKGNQSSKKS 196 G + I + + + K Sbjct: 65 GQQSIPTYAPSELQNEKDIGKR 86 >gi|323356598|ref|YP_004222994.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323272969|dbj|BAJ73114.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 197 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 4/107 (3%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + +G ++D RK + + ++ A V+ E G+ + S++ L Sbjct: 8 DEQRAVETLGAAVRDARKRLGLSVQALSEKAGVSFGLVSQLERGLGNPSLQSLQRLAGAL 67 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRL----DPYAIGARLKSIRKDKG 126 I + D + + + D A ++ + +G Sbjct: 68 GIPVAQLLDEPAVPLAVVTRAKRHIMPVAVDAPASQRAVRELLTPRG 114 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ RK G+S + G+ +S E+G P ++ +++ + + DE Sbjct: 20 VRDARKRLGLSVQALSEKAGVSFGLVSQLERGLGNPSLQSLQRLAGALGIPVAQLL--DE 77 Query: 178 VIVP-KSIKRAK 188 VP + RAK Sbjct: 78 PAVPLAVVTRAK 89 >gi|297156337|gb|ADI06049.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 218 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V R++D+R+ + T + A A + ++ E S+ L L Y + + Sbjct: 24 VAPRLRDLRRRSGLTLEAAARLAGLSPAHLSRLETARRQPSLPMLLALARTYGTTVSDLL 83 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 GEV R + + A G Sbjct: 84 -GEVSPERDPILRADRTAAWEAGGW 107 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R+ G++ +L G+ + LS E R P + + + + + G+ Sbjct: 28 LRDLRRRSGLTLEAAARLAGLSPAHLSRLETARRQPSLPMLLALARTYGTTVSDLL-GEV 86 Query: 178 VIVPKSIKRAK 188 I RA Sbjct: 87 SPERDPILRAD 97 >gi|239814885|ref|YP_002943795.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801462|gb|ACS18529.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 182 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 28/78 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R A + E+A S ++ E G+ S S+ + + + Sbjct: 1 MGLQIKALRMAAGISGNELAHRCGVSGSLLSRVERGLVSPSVETLNRIAVGLNVPLSRFF 60 Query: 92 DGEVIDRRYEDVTNKKRL 109 + V + + Sbjct: 61 CDHARRTDWSFVPAGRGI 78 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K++R G+S E G+ S LS E+G P ++ +I L + Sbjct: 4 QIKALRMAAGISGNELAHRCGVSGSLLSRVERGLVSPSVETLNRIAVGLNVPLSRFF 60 >gi|212636884|ref|YP_002313409.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212558368|gb|ACJ30822.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 182 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +K +RK +Q+E+A A S +++ E S S+ + + +S Sbjct: 2 DIGASLKTVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVEF 61 Query: 91 YDGEVIDRRYEDV 103 + E + V Sbjct: 62 FSIEDETVSEQKV 74 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 40/80 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA LK++RK+KG+SQ E K G+ NST+S E+ P + +K+ L Sbjct: 1 MDIGASLKTVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + ++ V + + ++ Sbjct: 61 FFSIEDETVSEQKVVYRSDE 80 >gi|187940017|gb|ACD39152.1| hypothetical protein PACL_0364 [Pseudomonas aeruginosa] Length = 112 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 27/73 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R+ Q+++A A S +E+G + +S D + Sbjct: 3 IGENIRKARERKGLRQEQVAEMAGIPLSTYKNYEHGKQPPPGDRIGAIARTLGVSADELV 62 Query: 92 DGEVIDRRYEDVT 104 E + +++ Sbjct: 63 FEESERQVADELR 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIG ++ R+ KG+ Q + ++ G+P ST NYE G+ P I + D Sbjct: 1 MAIGENIRKARERKGLRQEQVAEMAGIPLSTYKNYEHGKQPPPGDRIGAIARTLGVSADE 60 Query: 172 IYFGD 176 + F + Sbjct: 61 LVFEE 65 >gi|170748847|ref|YP_001755107.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655369|gb|ACB24424.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 143 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 23/65 (35%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G RI +R A +Q ++ V +E G + + ++ Sbjct: 12 ETDRTIGGRIAALRVAQGLSQTDLGQAIGVSFQQVQKYEKGRNRIGAGRLQAIADLLKVP 71 Query: 87 FDWIY 91 D + Sbjct: 72 VDTFF 76 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++R +G+SQ + G+ +G+ + YE+GR + I + K +D + Sbjct: 21 IAALRVAQGLSQTDLGQAIGVSFQQVQKYEKGRNRIGAGRLQAIADLLKVPVDTFF 76 >gi|115379556|ref|ZP_01466646.1| transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] gi|310821728|ref|YP_003954086.1| XRE family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115363441|gb|EAU62586.1| transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] gi|309394800|gb|ADO72259.1| Transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] Length = 284 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 7/66 (10%), Positives = 24/66 (36%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + VG ++ +R + + ++ + + + E G + +I + ++ Sbjct: 98 QDLAPVVGKNLRRLRIQRGLSLERLSKASGVSRAMLGQIELGQSAPTINVLWKIARALDL 157 Query: 86 SFDWIY 91 F + Sbjct: 158 PFSALI 163 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R +G+S K G+ + L E G++ P I KI + + Sbjct: 106 KNLRRLRIQRGLSLERLSKASGVSRAMLGQIELGQSAPTINVLWKIARALDLPFSALI 163 >gi|268611327|ref|ZP_06145054.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 68 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ + TQ ++A + + + +E G + L + +++S D+I + Sbjct: 3 RRIRDLREDKDMTQTQIAEILHCSQRVYSDYERGKLDIPTEILIKLADFHKVSVDYILER 62 Query: 94 EVID 97 Sbjct: 63 TDKK 66 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+DK M+Q + ++L S+YE+G+ + K+ K +D+I Sbjct: 1 MYRRIRDLREDKDMTQTQIAEILHCSQRVYSDYERGKLDIPTEILIKLADFHKVSVDYIL 60 >gi|302531579|ref|ZP_07283921.1| transcriptional regulator [Streptomyces sp. AA4] gi|302440474|gb|EFL12290.1| transcriptional regulator [Streptomyces sp. AA4] Length = 82 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P I + +G R+++ R Q+++A A + V+ E G+ + ++ L + Sbjct: 4 PPISAAARIIGERVREFRNKAGLNQEQLAEAAGVHWTFVSQVERGLRNINLHNLLKFADG 63 Query: 83 YEISFDWIYDG 93 ++ + DG Sbjct: 64 LGVNPAKLVDG 74 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R G++Q + + G+ + +S E+G + K + + G Sbjct: 15 ERVREFRNKAGLNQEQLAEAAGVHWTFVSQVERGLRNINLHNLLKFADGLGVNPAKLVDG 74 >gi|229094268|ref|ZP_04225344.1| hypothetical protein bcere0021_49750 [Bacillus cereus Rock3-42] gi|228689121|gb|EEL42944.1| hypothetical protein bcere0021_49750 [Bacillus cereus Rock3-42] Length = 65 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQHHITQVEMAKAMKVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQHHITQVEMAKAMKVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|223983578|ref|ZP_03633760.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM 12042] gi|223964464|gb|EEF68794.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM 12042] Length = 353 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 21/61 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I+ RK TQ +A AVN +ENG I L + + + Sbjct: 2 KINEVIRQRRKELGLTQDRVAELLGVSAPAVNKWENGNSYPDITLLPPLARLLKTDLNTL 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 40/92 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ RK+ G++Q +LLG+ ++ +E G + P+I + ++ K L+ Sbjct: 1 MKINEVIRQRRKELGLTQDRVAELLGVSAPAVNKWENGNSYPDITLLPPLARLLKTDLNT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + + + + + D +++ Sbjct: 61 LLSFQDELTDLEVANLMNEVAEQVKTGDLEAA 92 >gi|168178094|ref|ZP_02612758.1| conserved domain protein [Clostridium botulinum NCTC 2916] gi|226947985|ref|YP_002803076.1| hypothetical protein CLM_0846 [Clostridium botulinum A2 str. Kyoto] gi|182671230|gb|EDT83204.1| conserved domain protein [Clostridium botulinum NCTC 2916] gi|226841652|gb|ACO84318.1| conserved domain protein [Clostridium botulinum A2 str. Kyoto] Length = 69 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I++IR+ TQ +MA +N E + S+ AL + +++ D I+ Sbjct: 5 NHIREIRQKKGITQIKMAEDLQVTRQTINAIEKNKYNPSLELALKIIAYFDVPIDEIFIL 64 Query: 94 EVIDR 98 E D+ Sbjct: 65 EEDDK 69 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 34/67 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ IR+ KG++QI+ + L + T++ E+ + P ++ A KI +D Sbjct: 1 MKVINHIREIRQKKGITQIKMAEDLQVTRQTINAIEKNKYNPSLELALKIIAYFDVPIDE 60 Query: 172 IYFGDEV 178 I+ +E Sbjct: 61 IFILEED 67 >gi|166031433|ref|ZP_02234262.1| hypothetical protein DORFOR_01130 [Dorea formicigenerans ATCC 27755] gi|166028838|gb|EDR47595.1| hypothetical protein DORFOR_01130 [Dorea formicigenerans ATCC 27755] Length = 115 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +RK+ TQ+EM ++A+ E+G + + + A + E+ + + W+ G Sbjct: 3 ERLKTLRKSLGLTQEEMGQRLGVTKTAICSLESGRRNLTEQMAKSICREFRVDYYWLTVG 62 Query: 94 EVIDRRYEDVT 104 + Sbjct: 63 DGEMFVAAPDC 73 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 8/95 (8%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK++RK G++Q E G+ LG+ + + + E GR + A+ I + + W+ Sbjct: 1 MNERLKTLRKSLGLTQEEMGQRLGVTKTAICSLESGRRNLTEQMAKSICREFRVDYYWLT 60 Query: 174 FGD--------EVIVPKSIKRAKGNQSSKKSKKDK 200 GD + ++ + ++ ++ +K K+ Sbjct: 61 VGDGEMFVAAPDCLIDEVVEEYNLDEVDRKMLKEY 95 >gi|148359928|ref|YP_001251135.1| phage repressor [Legionella pneumophila str. Corby] gi|148281701|gb|ABQ55789.1| phage repressor [Legionella pneumophila str. Corby] Length = 220 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 1/87 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIG-ANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G RI RK T KE+A A + ++ +E G S A L ++ + Sbjct: 2 DIREQIGNRITKARKELGITIKELAARTAELSPARISNWEQGTRSPGPLEAKLLADQLNV 61 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPY 112 S ++ + + R Sbjct: 62 SAAYLLCLTDNPQGDLIQNPENRFRHI 88 Score = 39.2 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ RK+ G++ E + + +SN+EQG P A+ + ++ Sbjct: 9 NRITKARKELGITIKELAARTAELSPARISNWEQGTRSPGPLEAKLLADQLNVSAAYLLC 68 Query: 175 GDEVIVPKSIKRAKGN 190 + I+ + Sbjct: 69 LTDNPQGDLIQNPENR 84 >gi|325662578|ref|ZP_08151178.1| hypothetical protein HMPREF0490_01918 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471075|gb|EGC74301.1| hypothetical protein HMPREF0490_01918 [Lachnospiraceae bacterium 4_1_37FAA] Length = 64 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 29/56 (51%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++++R+ N+ +QK++A ++ + +E I Y + L Y +S D++ Sbjct: 1 MRNLRQDNDLSQKKVADMLGVAQTTYSQYELEKRPMPIDYLIALCKFYNVSADYML 56 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R+D +SQ + +LG+ +T S YE + I + + D++ Sbjct: 1 MRNLRQDNDLSQKKVADMLGVAQTTYSQYELEKRPMPIDYLIALCKFYNVSADYML 56 >gi|257440012|ref|ZP_05615767.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197364|gb|EEU95648.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 65 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ R +K M+Q + G+ T++ E+G P I R I ++ K LD Sbjct: 1 MPKNLKLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILGKTLDE 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 LFWEE 65 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ +A A +N E G + +I + + D ++ E Sbjct: 6 KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILGKTLDELFWEE 65 >gi|326201359|ref|ZP_08191231.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988927|gb|EGD49751.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 115 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYEISFDWI 90 G R++++R+ + TQK++ N + +E L L + + +S D++ Sbjct: 3 FGDRLRELREERDITQKKLGELINVSTRVIGYYEANDRFPKDENVLKTLADFFNVSVDFL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 I +D + ++ L Sbjct: 63 VGRTDIRNFSDDFVAESKIPYNLDLKGL 90 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLD 170 G RL+ +R+++ ++Q + G+L+ + + YE P+ + K + +D Sbjct: 1 MRFGDRLRELREERDITQKKLGELINVSTRVIGYYEANDRFPKDENVLKTLADFFNVSVD 60 Query: 171 WIYFGDEV 178 ++ ++ Sbjct: 61 FLVGRTDI 68 >gi|206967661|ref|ZP_03228617.1| DNA-binding protein [Bacillus cereus AH1134] gi|218236090|ref|YP_002365489.1| DNA-binding protein [Bacillus cereus B4264] gi|228919545|ref|ZP_04082909.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228951193|ref|ZP_04113308.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957113|ref|ZP_04118883.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042556|ref|ZP_04190299.1| Transcriptional regulator [Bacillus cereus AH676] gi|229068379|ref|ZP_04201682.1| Transcriptional regulator [Bacillus cereus F65185] gi|229078006|ref|ZP_04210615.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|229149032|ref|ZP_04277277.1| Transcriptional regulator [Bacillus cereus m1550] gi|229177222|ref|ZP_04304609.1| Transcriptional regulator [Bacillus cereus 172560W] gi|229188901|ref|ZP_04315934.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|206736581|gb|EDZ53728.1| DNA-binding protein [Bacillus cereus AH1134] gi|218164047|gb|ACK64039.1| DNA-binding protein [Bacillus cereus B4264] gi|228594606|gb|EEK52392.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228606228|gb|EEK63662.1| Transcriptional regulator [Bacillus cereus 172560W] gi|228634572|gb|EEK91156.1| Transcriptional regulator [Bacillus cereus m1550] gi|228705344|gb|EEL57721.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|228714840|gb|EEL66712.1| Transcriptional regulator [Bacillus cereus F65185] gi|228726775|gb|EEL77989.1| Transcriptional regulator [Bacillus cereus AH676] gi|228802560|gb|EEM49407.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808490|gb|EEM54994.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840188|gb|EEM85465.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 67 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R + TQ+++A ++L E G + S+ L + + + + ++ Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 94 EVI 96 E Sbjct: 64 EKE 66 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R ++Q + + +G+ T+S E+G+ P + KI K L+ + Sbjct: 1 MAVSKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDL 60 Query: 173 YFGDEV 178 ++ ++ Sbjct: 61 FWEEKE 66 >gi|153831210|ref|ZP_01983877.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] gi|148873308|gb|EDL71443.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] Length = 181 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 28/69 (40%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K++RK+ + A ++ + E G S +I + + +E SF Sbjct: 6 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFEASF 65 Query: 88 DWIYDGEVI 96 + + Sbjct: 66 SAFFANDPQ 74 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK++RK +G+S +L G+ + L E+G + P I KI + Sbjct: 5 MFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFEAS 64 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 65 FSAFFANDPQLLSSE 79 >gi|30019989|ref|NP_831620.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|31415741|ref|NP_852481.1| Transcriptional regulator, MerR family [Bacillus phage phBC6A51] gi|228968837|ref|ZP_04129799.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|29895534|gb|AAP08821.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228790900|gb|EEM38539.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 25/70 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K R ++ TQ E+ S ++ EN + + + + +S D + Sbjct: 4 FGENLKKFRNSHTLTQAELGDKIQLSRSQISNLENHFNEPDLDSLDRIASFFNVSIDALL 63 Query: 92 DGEVIDRRYE 101 + + Sbjct: 64 GRNIPESEER 73 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK R ++Q E G + + S +SN E P++ +I +D Sbjct: 1 MNTFGENLKKFRNSHTLTQAELGDKIQLSRSQISNLENHFNEPDLDSLDRIASFFNVSID 60 Query: 171 WIYFGDEVIVPKSIK 185 + + + +K Sbjct: 61 ALLGRNIPESEERLK 75 >gi|283783609|ref|YP_003374363.1| toxin-antitoxin system, antitoxin component, Xre family [Gardnerella vaginalis 409-05] gi|283442067|gb|ADB14533.1| toxin-antitoxin system, antitoxin component, Xre family [Gardnerella vaginalis 409-05] Length = 94 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 +N E + + +++ + Q +D+ + RK TQ E++ +S ++ Sbjct: 1 MNDLHELTDELMKDPEFKKEYDALQPERDLTMSLVMARKRAGLTQAELSEKTGISQSDIS 60 Query: 63 LFENGMCSTSIRYALYLRNEYE 84 ENG + +I + N Sbjct: 61 RLENGSRNPTIALLNRIANALN 82 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 5/80 (6%) Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 D + + Y+ + ++ L L RK G++Q E + G+ S +S Sbjct: 8 TDELMKDPEFKKEYDALQPERDL-----TMSLVMARKRAGLTQAELSEKTGISQSDISRL 62 Query: 147 EQGRTIPEIKPARKIKQVTK 166 E G P I +I Sbjct: 63 ENGSRNPTIALLNRIANALN 82 >gi|270264896|ref|ZP_06193160.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041194|gb|EFA14294.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 152 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 35/108 (32%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K G R+K++R A +Q+ A S ++ E G + S+ L N + Sbjct: 3 LRKLFGQRVKELRVATGMSQEAFADRCGFACSYMSRIERGGSNASLDAIEVLANALSVEP 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + + + ++ D L S R + + Sbjct: 63 WQLLVSDSSEDTDLELLVPYAADGSCFNPGLASSRDGSFAVGEKVAQK 110 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+K +R GMSQ F G S +S E+G + + + + Sbjct: 7 FGQRVKELRVATGMSQEAFADRCGFACSYMSRIERGGSNASLDAIEVLANALSVEPWQLL 66 Query: 174 FGD 176 D Sbjct: 67 VSD 69 >gi|239815433|ref|YP_002944343.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239802010|gb|ACS19077.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 139 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+ R TQ ++A ++ V+ +E G L Y++S D + + Sbjct: 2 RLASARDGKGMTQDQVAERFGVNKATVSAWETGRGVPDALRLRALAKLYDVSADSLLWED 61 Query: 95 VIDRRYEDV 103 + Sbjct: 62 SLSPDAMKF 70 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL S R KGM+Q + + G+ +T+S +E GR +P+ R + ++ D + + Sbjct: 1 MRLASARDGKGMTQDQVAERFGVNKATVSAWETGRGVPDALRLRALAKLYDVSADSLLW- 59 Query: 176 DEVIVPKSIKRA 187 ++ + P ++K A Sbjct: 60 EDSLSPDAMKFA 71 >gi|116490218|ref|YP_809762.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1] gi|290889597|ref|ZP_06552687.1| hypothetical protein AWRIB429_0077 [Oenococcus oeni AWRIB429] gi|116090943|gb|ABJ56097.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1] gi|290480795|gb|EFD89429.1| hypothetical protein AWRIB429_0077 [Oenococcus oeni AWRIB429] Length = 178 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K R A TQ ++A V+ +E G +I L+ Y +S D + Sbjct: 3 LGESLKSARNAVGLTQDQVAKKMYVTRQTVSRWEQGKTLPNIYVLRELKQLYGLSLDNL- 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + +R E+ K+++ A+ + Sbjct: 62 --SLQTKRNEEFRKMKKINWLALFGAI 86 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G LKS R G++Q + K + + T+S +EQG+T+P I R++KQ+ LD Sbjct: 1 MSLGESLKSARNAVGLTQDQVAKKMYVTRQTVSRWEQGKTLPNIYVLRELKQLYGLSLDN 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|87119803|ref|ZP_01075700.1| transcriptional regulator, putative [Marinomonas sp. MED121] gi|86165279|gb|EAQ66547.1| transcriptional regulator, putative [Marinomonas sp. MED121] Length = 184 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+ IR+ +Q+++A A SA+++ E S S+ + +S Sbjct: 2 DIGERLLTIRRNKGLSQRDLAKRAGVTNSAISMIETNRVSPSVSSLEKILAGMGMSLTEF 61 Query: 91 YDGEVIDRRYEDV 103 + + D+ V Sbjct: 62 FSIKQKDKLDYQV 74 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RL +IR++KG+SQ + K G+ NS +S E R P + KI L Sbjct: 1 MDIGERLLTIRRNKGLSQRDLAKRAGVTNSAISMIETNRVSPSVSSLEKILAGMGMSLTE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|189346772|ref|YP_001943301.1| XRE family transcriptional regulator [Chlorobium limicola DSM 245] gi|189340919|gb|ACD90322.1| transcriptional regulator, XRE family [Chlorobium limicola DSM 245] Length = 242 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R Q E I + V+ EN T+ + L E+ ++ +W+ Sbjct: 7 LGQRVKALRDHFALRQDEFGIKIGISGNRVSEIENDKGGTTASVLMSLCREFPVNPEWML 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKD-KGMSQIEFGKLL 136 G + E T+ +D L + +R G ++ + G+ L Sbjct: 67 SGRGKMLKGEAETSLPEVDFGIRLNLLERQMRHVLHGGAERDTGEQL 113 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 30/72 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K++R + Q EFG +G+ + +S E + + + + +W+ G Sbjct: 9 QRVKALRDHFALRQDEFGIKIGISGNRVSEIENDKGGTTASVLMSLCREFPVNPEWMLSG 68 Query: 176 DEVIVPKSIKRA 187 ++ + + Sbjct: 69 RGKMLKGEAETS 80 >gi|322388880|ref|ZP_08062472.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140263|gb|EFX35776.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 228 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 10/103 (9%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQKE+A A + +E G+ S L ++ + Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGVKEPSKEKVKQLEEILKVPKGYFTQI 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E++ K K + + ++Q E K + Sbjct: 65 EIVRLYNSLSNKGKE----------KVVVYARNLAQEEQAKKV 97 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ RK+ ++Q E + LG+ S +E+G P + ++++++ K + Sbjct: 1 MYQPEKLKARRKELKLTQKEIAEQLGISFQAYSAWERGVKEPSKEKVKQLEEILKVPKGY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|289674441|ref|ZP_06495331.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] Length = 182 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F E VP++ Sbjct: 58 MVEFFSEESVPEN 70 >gi|228903645|ref|ZP_04067765.1| hypothetical protein bthur0014_48030 [Bacillus thuringiensis IBL 4222] gi|228855913|gb|EEN00453.1| hypothetical protein bthur0014_48030 [Bacillus thuringiensis IBL 4222] Length = 65 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNIIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 IK++RK N+ TQ EMA + EN + S+ +L + + + + I+ E Sbjct: 7 IKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTLE 65 >gi|221201363|ref|ZP_03574402.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] gi|221208843|ref|ZP_03581841.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221171299|gb|EEE03748.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221178631|gb|EEE11039.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] Length = 205 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 29/84 (34%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++++R T +A S ++L E S + L IS Sbjct: 14 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 73 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDP 111 ++ G+ V ++ + Sbjct: 74 AGLFGGDDGAPAQPLVRRAQQAEW 97 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+ P K+ L ++ G Sbjct: 20 RRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISLAGLFGG 79 Query: 176 DEVIVPKSIKR 186 D+ + + R Sbjct: 80 DDGAPAQPLVR 90 >gi|221214075|ref|ZP_03587048.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221166252|gb|EED98725.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 205 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 29/84 (34%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++++R T +A S ++L E S + L IS Sbjct: 14 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 73 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDP 111 ++ G+ V ++ + Sbjct: 74 AGLFGGDDGAPAQPLVRRAQQAEW 97 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+ P K+ L ++ G Sbjct: 20 RRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISLAGLFGG 79 Query: 176 DEVIVPKSIKR 186 D+ + + R Sbjct: 80 DDGAPAQPLVR 90 >gi|254390107|ref|ZP_05005328.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326441822|ref|ZP_08216556.1| helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|197703815|gb|EDY49627.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 420 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G IK R+A +Q+E+A A S V E G + + + ++ Sbjct: 3 QEIGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSA 62 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 ++ + D K+ L Sbjct: 63 LFVAGPPEPVVGDDATKQSL 82 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R+ +G+SQ E + G+ ST+ EQGR + I + ++ Sbjct: 8 NIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSALF 64 >gi|189349935|ref|YP_001945563.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189333957|dbj|BAG43027.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 205 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 29/84 (34%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++++R T +A S ++L E S + L IS Sbjct: 14 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 73 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDP 111 ++ G+ V ++ + Sbjct: 74 AGLFGGDDGAPAQPLVRRAQQAEW 97 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+ P K+ L ++ G Sbjct: 20 RRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISLAGLFGG 79 Query: 176 DEVIVPKSIKR 186 D+ + + R Sbjct: 80 DDGAPAQPLVR 90 >gi|153813072|ref|ZP_01965740.1| hypothetical protein RUMOBE_03480 [Ruminococcus obeum ATCC 29174] gi|153814732|ref|ZP_01967400.1| hypothetical protein RUMTOR_00947 [Ruminococcus torques ATCC 27756] gi|154502995|ref|ZP_02040055.1| hypothetical protein RUMGNA_00817 [Ruminococcus gnavus ATCC 29149] gi|317501372|ref|ZP_07959574.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] gi|145847763|gb|EDK24681.1| hypothetical protein RUMTOR_00947 [Ruminococcus torques ATCC 27756] gi|149830874|gb|EDM85964.1| hypothetical protein RUMOBE_03480 [Ruminococcus obeum ATCC 29174] gi|153796349|gb|EDN78769.1| hypothetical protein RUMGNA_00817 [Ruminococcus gnavus ATCC 29149] gi|295107719|emb|CBL21672.1| Helix-turn-helix. [Ruminococcus obeum A2-162] gi|316897236|gb|EFV19305.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] Length = 209 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +E G + + L L Sbjct: 4 KELRKLIGSRAKQRRTELNLTQPYIAEKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + ++ A+ LK + Sbjct: 64 VSVEWL-RGETDEYETDITDKRELQIRDAMTDILKQL 99 Score = 43.4 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 2/84 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRTELNLTQPYIAEKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVEWL-RGET 73 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKK 201 I + Q K Sbjct: 74 DEYETDITDKRELQIRDAMTDILK 97 >gi|146313164|ref|YP_001178238.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145320040|gb|ABP62187.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 200 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 30/88 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +I Q V +RI+ RK + E++ A+ + + E G + SI L Sbjct: 14 DIAQVSLAVASRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAAL 73 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDP 111 +S I + + + Sbjct: 74 GVSVADIVNVSSEPLVHVIEETAIPVLW 101 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +R++S RKDK +S E + + L E+G P I K+ + Sbjct: 20 LAVASRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAALGVSVAD 79 Query: 172 IY 173 I Sbjct: 80 IV 81 >gi|161525328|ref|YP_001580340.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160342757|gb|ABX15843.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 224 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 29/84 (34%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++++R T +A S ++L E S + L IS Sbjct: 33 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 92 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDP 111 ++ G+ V ++ + Sbjct: 93 AGLFGGDDGAPAQPLVRRAQQAEW 116 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + I + T I R++ +R +G + G+ S +S E+ Sbjct: 13 LLENPSIMQESPPPTADDAGINERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERA 72 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 P K+ L ++ GD+ + + R Sbjct: 73 AASPTAVVLDKLAAGLGISLAGLFGGDDGAPAQPLVR 109 >gi|34497476|ref|NP_901691.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34103331|gb|AAQ59693.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 181 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R++ +R +Q+E+A A ++L E S S+ + I+ Sbjct: 2 DVGARLRMVRTRFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPITLAEF 61 Query: 91 YDGEVIDRRYE 101 + + + Sbjct: 62 FTFDAEPAQPR 72 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GARL+ +R G+SQ E K G+ N T+S EQ R P + +K+ + L Sbjct: 1 MDVGARLRMVRTRFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPITLAE 60 Query: 172 IYFGD-EVIVPKSIKRAKG 189 + D E P+ +A Sbjct: 61 FFTFDAEPAQPRVFYQADE 79 >gi|326331424|ref|ZP_08197714.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioidaceae bacterium Broad-1] gi|325950680|gb|EGD42730.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioidaceae bacterium Broad-1] Length = 508 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 Y +G I+D RK TQ ++A N +SA+N E G + S+ + + S Sbjct: 5 YKGRIGNLIRDARKHKGLTQAQLADLLNTSQSAINRIEQGQQNLSLEMIARVGAALDSSL 64 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ RK KG++Q + LL S ++ EQG+ ++ ++ L Sbjct: 11 NLIRDARKHKGLTQAQLADLLNTSQSAINRIEQGQQNLSLEMIARVGAALDSSL 64 >gi|323342462|ref|ZP_08082694.1| cro/CI family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463574|gb|EFY08768.1| cro/CI family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 177 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K +R N T +E+A + + ++ EN + S SI + + Sbjct: 2 EIGKRLKQLRTKNGLTLEELASRSELTKGFLSQLENDLTSPSIATLNDIVEALGTNLSVF 61 Query: 91 YDGEVIDRRYEDVTNK 106 + E ++ + Sbjct: 62 FKEESAEQVVFTADDY 77 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RLK +R G++ E + LS E T P I I + +L Sbjct: 1 MEIGKRLKQLRTKNGLTLEELASRSELTKGFLSQLENDLTSPSIATLNDIVEALGTNLSV 60 Query: 172 IYFGD 176 + + Sbjct: 61 FFKEE 65 >gi|229016024|ref|ZP_04172980.1| Transcriptional regulator [Bacillus cereus AH1273] gi|229022243|ref|ZP_04178788.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228739046|gb|EEL89497.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228745257|gb|EEL95303.1| Transcriptional regulator [Bacillus cereus AH1273] Length = 66 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R + TQ+++A ++L E G + S+ L + + + ++ Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNKTLNDLFWE 63 Query: 94 EVI 96 E Sbjct: 64 EEE 66 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R ++Q + + +G+ T+S E+G+ P + KI K L+ + Sbjct: 1 MAVSKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNKTLNDL 60 Query: 173 YFGDEV 178 ++ +E Sbjct: 61 FWEEEE 66 >gi|162449406|ref|YP_001611773.1| putative regulator of molybdate uptake [Sorangium cellulosum 'So ce 56'] gi|161159988|emb|CAN91293.1| putative regulator of molybdate uptake [Sorangium cellulosum 'So ce 56'] Length = 371 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++ R+A +Q +A A +V E G + ++ AL L + + S + ++ Sbjct: 10 NRVRERREARGLSQVALAERARLTRQSVGAIEAGRATPAVDVALRLASALDCSVEVLFGE 69 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 T+ A AR+ + Q + + + E+ Sbjct: 70 PSAVADLATETDAPAALGRAAVARIADRWVSYPLEQ----DAVRVAADGIVTGERRGRAV 125 Query: 154 EIKPARKIKQV 164 ++P R + +V Sbjct: 126 -VEPLRALAEV 135 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ R+ +G+SQ+ + + ++ E GR P + A ++ ++ ++ Sbjct: 10 NRVRERREARGLSQVALAERARLTRQSVGAIEAGRATPAVDVALRLASALDCSVEVLF 67 >gi|162448594|ref|YP_001610961.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159176|emb|CAN90481.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 230 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 25/86 (29%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + V + +K R + + +A + + + E G + +I + Sbjct: 43 DASDLTPVVASNLKRFRAERGLSLERLAKASGVSRAMLGQIELGQSTPTINVLWKIARAL 102 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRL 109 + F + + R+ Sbjct: 103 GVPFSALMSQATSPVTTVMQASHARI 128 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R ++G+S K G+ + L E G++ P I KI + + Sbjct: 53 SNLKRFRAERGLSLERLAKASGVSRAMLGQIELGQSTPTINVLWKIARALGVPFSALM 110 >gi|29830326|ref|NP_824960.1| DNA-binding protein [Streptomyces avermitilis MA-4680] gi|29607437|dbj|BAC71495.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680] Length = 285 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDH 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHSFGD 94 Score = 44.6 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 >gi|134298752|ref|YP_001112248.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051452|gb|ABO49423.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 218 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 51/140 (36%), Gaps = 8/140 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RI+ +R + E++ + +S+++ E+G + + + +S Sbjct: 2 DIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAEF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIG----ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 ++ + Y N + + + +K+I + ++ E ST++N Sbjct: 62 FNEGFMPCPYSSDINSLVNEVQNLKPSQVSLIKNIATEFSVTNEELELAAKKSLSTIANR 121 Query: 147 EQGRTIPEIKPARKIKQVTK 166 E + I V Sbjct: 122 ESASGVLHIDLL----DVFG 137 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGAR++ +R +G+S E + G+ S+LS E G+ P +I + Sbjct: 1 MDIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|75758655|ref|ZP_00738772.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493826|gb|EAO56925.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 186 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 +VG +I RK T K +A A+ S ++ E G+ + S++ + I ++ Sbjct: 7 NVGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNF 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + +K++ G + +E L+ + T S+ E Sbjct: 67 FLEDTNTEELVVRANQRKKMTFPESGNVSYELLSPNLDGSLELA-LMNLLPQTASSME 123 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +G ++ + RKD G++ +L + S LS E+G T P ++ + I Sbjct: 1 MYMNNINVGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALN 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 IPL-FNFFLEDTNTEELVVRANQRKK 85 >gi|325847068|ref|ZP_08169894.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481040|gb|EGC84085.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 132 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL-YLRNEYEISFDWI 90 GT+++ +R++ N TQ ++A ++ +E G R L + S D++ Sbjct: 3 FGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTSHDYL 62 Query: 91 YDGEVI 96 E Sbjct: 63 VTDEDN 68 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR-KIKQVTKKHLD 170 + G +L+ +R+ K ++Q + KL+G+ T+S YE G + P + K+ +V D Sbjct: 1 MSFGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTSHD 60 Query: 171 WIYFGDEVIVPKSIKR--AKGNQSSKK 195 ++ ++ + + ++ KG + +K+ Sbjct: 61 YLVTDEDNFILDAREKYGYKGAKDAKE 87 >gi|314934399|ref|ZP_07841758.1| conserved domain protein [Staphylococcus caprae C87] gi|313652329|gb|EFS16092.1| conserved domain protein [Staphylococcus caprae C87] Length = 65 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R +Q +A +N+ EN + S++ + + E ++ + ++ Sbjct: 2 NRVKQYRAHQKISQLALARAVGVSRQTINMIENDRYNPSLKLCINIAKELNVTLNDLF 59 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R + +SQ+ + +G+ T++ E R P +K I + L+ +++ Sbjct: 1 MNRVKQYRAHQKISQLALARAVGVSRQTINMIENDRYNPSLKLCINIAKELNVTLNDLFW 60 Query: 175 GDE 177 D+ Sbjct: 61 EDK 63 >gi|291539786|emb|CBL12897.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 223 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 23/64 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK++R TQ+++A ++ +E + IS + I Sbjct: 6 IGKNIKELRMKLGYTQEQLANELGVTRQTLSNWECEKTIPDSMQLNEISKRLNISIECIM 65 Query: 92 DGEV 95 E Sbjct: 66 GEEQ 69 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +K +R G +Q + LG+ TLSN+E +TIP+ +I + Sbjct: 1 MEKICIGKNIKELRMKLGYTQEQLANELGVTRQTLSNWECEKTIPDSMQLNEISKRLNIS 60 Query: 169 LDWIYFGDE 177 ++ I ++ Sbjct: 61 IECIMGEEQ 69 >gi|300774987|ref|ZP_07084850.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300506802|gb|EFK37937.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 123 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT++K +R+ NN +Q E+A + + A N +E+ S+ + +EI ++ Sbjct: 3 LGTKLKQLRQRNNWSQAEVAYKLDISQPAYNKWESDQGKPSLDKLGKIAEVFEIEIQDLF 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 + E + + Sbjct: 63 ESEGNVIISNNTFENSNI 80 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +LK +R+ SQ E L + + +E + P + KI +V + + Sbjct: 1 MSLGTKLKQLRQRNNWSQAEVAYKLDISQPAYNKWESDQGKPSLDKLGKIAEVFEIEIQD 60 Query: 172 IYFGDEVIVPKSIKRAKGN 190 ++ + ++ + N Sbjct: 61 LFESEGNVIISNNTFENSN 79 >gi|172060084|ref|YP_001807736.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171992601|gb|ACB63520.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 219 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 33/89 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++D+R T +A + S ++L E S + L +S Sbjct: 14 INERIARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSL 73 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 ++ G+ D + + + + + A Sbjct: 74 AGLFGGDRDDAPAQPLVRRAQQAEWRDPA 102 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 28/80 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+ P K+ L ++ G Sbjct: 20 RRVRDLRTLRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAGLFGG 79 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 D P + Q+ + Sbjct: 80 DRDDAPAQPLVRRAQQAEWR 99 >gi|70727393|ref|YP_254309.1| hypothetical protein SH2394 [Staphylococcus haemolyticus JCSC1435] gi|68448119|dbj|BAE05703.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 224 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 11/92 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN-----------QLESAVNLFENGMCSTSIRYALYLR 80 G+RIK +RK T ++++ + + ++ +EN + L Sbjct: 3 FGSRIKKLRKQKGMTLQQLSDDLHEQFPAKDKRNSFTKGKLSNWENDKSEPIAKTVSQLA 62 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPY 112 + +S D++ E E + ++ Y Sbjct: 63 TYFGVSMDYLIGLEDDIVPIEKIDKYYQVPYY 94 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 11/81 (13%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLG-----------MPNSTLSNYEQGRTIPEIKPARK 160 G+R+K +RK KGM+ + L LSN+E ++ P K + Sbjct: 1 MTFGSRIKKLRKQKGMTLQQLSDDLHEQFPAKDKRNSFTKGKLSNWENDKSEPIAKTVSQ 60 Query: 161 IKQVTKKHLDWIYFGDEVIVP 181 + +D++ ++ IVP Sbjct: 61 LATYFGVSMDYLIGLEDDIVP 81 >gi|156936184|ref|YP_001440100.1| hypothetical protein ESA_04083 [Cronobacter sakazakii ATCC BAA-894] gi|46093560|dbj|BAD14974.1| hypothetical protein [Escherichia coli] gi|156534438|gb|ABU79264.1| hypothetical protein ESA_04083 [Cronobacter sakazakii ATCC BAA-894] Length = 125 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 5/94 (5%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG RI+ RK T + +A + ++ +E G ++ + + + + W Sbjct: 11 KQVGQRIQMRRKELGITAQHLAELVDISHQQLSRYERGTNKINVAHLVNIAIKLNTPISW 70 Query: 90 IYDG-----EVIDRRYEDVTNKKRLDPYAIGARL 118 + + + +D K D ++ Sbjct: 71 FFIDCFSTLDNESKNQQDFVPVKDADLKNRFDQI 104 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 29/79 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK+ G++ +L+ + + LS YE+G + I + W + Sbjct: 15 QRIQMRRKELGITAQHLAELVDISHQQLSRYERGTNKINVAHLVNIAIKLNTPISWFFID 74 Query: 176 DEVIVPKSIKRAKGNQSSK 194 + K + K Sbjct: 75 CFSTLDNESKNQQDFVPVK 93 >gi|88855996|ref|ZP_01130658.1| Transcription regulator [marine actinobacterium PHSC20C1] gi|88814863|gb|EAR24723.1| Transcription regulator [marine actinobacterium PHSC20C1] Length = 193 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 ++P +G RI+ RKA T +++A+ A + ++ E S S+ + L Sbjct: 3 PLSPSPSAEALAIGARIRSARKAQGFTLEQVAVSAGLTKGFLSRLERDETSPSVATLVQL 62 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + ++ + L Sbjct: 63 CQVLSLEIGSLFAEPEAVKISLANAPHINL 92 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AIGAR++S RK +G + + G+ LS E+ T P + ++ QV + Sbjct: 13 LAIGARIRSARKAQGFTLEQVAVSAGLTKGFLSRLERDETSPSVATLVQLCQVLSLEIGS 72 Query: 172 IYFGDEVIV 180 ++ E + Sbjct: 73 LFAEPEAVK 81 >gi|313898798|ref|ZP_07832332.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956380|gb|EFR38014.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +++IRK +GM Q E +G+ +LS E+G P KI +V Sbjct: 1 MKINFLGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVT 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 PNELLSGE 68 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK Q+E+A +++ E G+ + + +++ + + Sbjct: 6 LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVTPNELL 65 Query: 92 DGE 94 GE Sbjct: 66 SGE 68 >gi|302559931|ref|ZP_07312273.1| PbsX family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302477549|gb|EFL40642.1| PbsX family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 165 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R++ + +++A A ++ E G+ S + IS + + Sbjct: 14 NLGEYLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 73 Query: 91 Y 91 Y Sbjct: 74 Y 74 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 17 EYLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 74 >gi|288962006|ref|YP_003452316.1| transcriptional regulator [Azospirillum sp. B510] gi|288914286|dbj|BAI75772.1| transcriptional regulator [Azospirillum sp. B510] Length = 486 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ TQ +A S +N EN ++ + + +E+ Sbjct: 7 LGYKLRRLREQRGLTQASLAKTLELSPSYLNQLENNQRPLTLPVLMRIAATFELELSAFL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK--SIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 E D R + DP GA L +R G S ++L + + +E+ Sbjct: 67 --EDEDSRLVSDLREALADPLFAGAPLTSGELRSVVGASPELARRVLSLHQAYQKLHERV 124 Query: 150 RT 151 ++ Sbjct: 125 QS 126 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R+ +G++Q K L + S L+ E + + +I + L ++ Sbjct: 11 LRRLREQRGLTQASLAKTLELSPSYLNQLENNQRPLTLPVLMRIAATFELELSAFLEDED 70 Query: 178 VIVPKSIKRA 187 + ++ A Sbjct: 71 SRLVSDLREA 80 >gi|229170545|ref|ZP_04298193.1| Transcriptional regulator [Bacillus cereus AH621] gi|228612894|gb|EEK70071.1| Transcriptional regulator [Bacillus cereus AH621] Length = 65 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R TQ+E+A N ++L E+ + S++ +++ + S D ++ Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKLFWE 63 Query: 94 E 94 E Sbjct: 64 E 64 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R +KG++Q E ++ + T+S E + P +K I + K LD + Sbjct: 1 MSVSKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKL 60 Query: 173 YFGD 176 ++ + Sbjct: 61 FWEE 64 >gi|225856831|ref|YP_002738342.1| hypothetical protein SPP_1197 [Streptococcus pneumoniae P1031] gi|322385358|ref|ZP_08059003.1| Cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|225725662|gb|ACO21514.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|321270617|gb|EFX53532.1| Cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 74 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 34 TRIKDIRKANNKTQKEMAIG-ANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+D+R+ ++ TQ+ +A N S+ + E G SI + L + Y++S D++ Sbjct: 3 KRIRDLREDDDLTQEYIAKIVLNCTRSSYSKMEAGSRLISINDLIKLADFYKVSLDYLVG 62 Query: 93 GEVIDRRYEDVT 104 + Sbjct: 63 RVDNKEDHYSKK 74 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKL-LGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R++ +R+D ++Q K+ L S+ S E G + I K+ K LD++ Sbjct: 1 MLKRIRDLREDDDLTQEYIAKIVLNCTRSSYSKMEAGSRLISINDLIKLADFYKVSLDYL 60 Query: 173 YFGDEVIVPKSIKR 186 + K+ Sbjct: 61 VGRVDNKEDHYSKK 74 >gi|161510949|ref|YP_001569072.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142637|ref|ZP_03567130.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|294850703|ref|ZP_06791424.1| transcriptional regulator [Staphylococcus aureus A9754] gi|302344736|ref|YP_003813121.1| hypothetical protein pSK1_p26 [Staphylococcus aureus] gi|160369758|gb|ABX30728.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|270299795|gb|ACZ68601.1| hypothetical protein SAP064A_010 [Staphylococcus aureus] gi|270300347|gb|ACZ69153.1| hypothetical protein SAP066A_022 [Staphylococcus aureus] gi|270300431|gb|ACZ69237.1| hypothetical protein SAP070B_021 [Staphylococcus aureus] gi|270300546|gb|ACZ69352.1| hypothetical protein SAP062B_011 [Staphylococcus aureus] gi|281334293|gb|ADA61377.1| hypothetical protein SAP015A_013 [Staphylococcus aureus] gi|281334660|gb|ADA61744.1| hypothetical protein SAP045A_012 [Staphylococcus epidermidis] gi|281334719|gb|ADA61803.1| hypothetical protein SAP046A_025 [Staphylococcus aureus] gi|281334822|gb|ADA61906.1| hypothetical protein SAP049A_017 [Staphylococcus aureus] gi|281334879|gb|ADA61963.1| hypothetical protein SAP050A_035 [Staphylococcus aureus] gi|281334891|gb|ADA61975.1| hypothetical protein SAP051A_010 [Staphylococcus aureus] gi|281334948|gb|ADA62032.1| hypothetical protein SAP052A_032 [Staphylococcus aureus] gi|282166272|gb|ADA80289.1| hypothetical protein SAP107B_015 [Staphylococcus epidermidis] gi|282166632|gb|ADA80648.1| hypothetical protein SAP094B_021 [Staphylococcus aureus] gi|282166656|gb|ADA80672.1| hypothetical protein SAP098A_003 [Staphylococcus aureus] gi|282166710|gb|ADA80726.1| hypothetical protein SAP101A_022 [Staphylococcus aureus] gi|282166826|gb|ADA80842.1| hypothetical protein SAP104C_023 [Staphylococcus aureus SK6575] gi|282166894|gb|ADA80910.1| hypothetical protein SAP100B_006 [Staphylococcus aureus] gi|294822453|gb|EFG38901.1| transcriptional regulator [Staphylococcus aureus A9754] gi|300492210|gb|ADK23691.1| hypothetical protein [Staphylococcus aureus] gi|302751843|gb|ADL66020.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304380376|gb|ADM28820.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304381944|gb|ADM28861.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304381983|gb|ADM28899.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304382081|gb|ADM28943.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304384184|gb|ADM28984.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304384532|gb|ADM29026.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304386475|gb|ADM29070.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304389248|gb|ADM29232.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|315195841|gb|EFU26210.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] Length = 61 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI++ RK +Q+ ++ +N EN ++ A L ++ + D ++ Sbjct: 3 NRIREYRKQKGISQETLSKELKVSRQTINAIENNKYDPTLTLAFKLARLFDTTVDELF 60 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ RK KG+SQ K L + T++ E + P + A K+ ++ +D ++ Sbjct: 1 MKNRIREYRKQKGISQETLSKELKVSRQTINAIENNKYDPTLTLAFKLARLFDTTVDELF 60 >gi|153954625|ref|YP_001395390.1| hypothetical protein CKL_2007 [Clostridium kluyveri DSM 555] gi|219855103|ref|YP_002472225.1| hypothetical protein CKR_1760 [Clostridium kluyveri NBRC 12016] gi|146347483|gb|EDK34019.1| Hypothetical protein CKL_2007 [Clostridium kluyveri DSM 555] gi|219568827|dbj|BAH06811.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 106 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 33/67 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RI+++RK NN T +++ + ++ EN + + + + + + I+ Sbjct: 3 DLGARIRELRKLNNVTAVKLSAKLGISQGQLSRIENNVNTAQFDTIMRICDFFSITLSEF 62 Query: 91 YDGEVID 97 ++ + + Sbjct: 63 FNDDNSE 69 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 30/85 (35%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +GAR++ +RK ++ ++ LG+ LS E + +I L Sbjct: 1 MFDLGARIRELRKLNNVTAVKLSAKLGISQGQLSRIENNVNTAQFDTIMRICDFFSITLS 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + D K +S K Sbjct: 61 EFFNDDNSEHIVLTSELKELLNSAK 85 >gi|89100265|ref|ZP_01173131.1| hypothetical protein B14911_24576 [Bacillus sp. NRRL B-14911] gi|89085003|gb|EAR64138.1| hypothetical protein B14911_24576 [Bacillus sp. NRRL B-14911] Length = 116 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 35/93 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK R+ N TQ+E+A+ S + +ENG + L + ++ + Sbjct: 4 IGLAIKQNRERLNLTQQELAVKLRIGTSTIEKYENGCQQPDTQTILKISTILDVPASELL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + + ++L K I K+ Sbjct: 64 EHGFTACQTGLDPELEQLLLETGIHDAKMILKN 96 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 AIG +K R+ ++Q E L + ST+ YE G P+ + KI + Sbjct: 1 MSAIGLAIKQNRERLNLTQQELAVKLRIGTSTIEKYENGCQQPDTQTILKISTILDVPAS 60 Query: 171 WIY 173 + Sbjct: 61 ELL 63 >gi|257879449|ref|ZP_05659102.1| predicted protein [Enterococcus faecium 1,230,933] gi|257813677|gb|EEV42435.1| predicted protein [Enterococcus faecium 1,230,933] Length = 133 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 1/95 (1%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 + + +I T Y K +G RI+ R +Q ++ + ++ E G Sbjct: 4 RIIHSMEVIETQPEIDYVK-IGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKV 62 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 S+ L L E +FD+ + + N+ Sbjct: 63 SLAMLLKLAFVLEKNFDYFLLDTPYAKCDSIIDNE 97 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 44/93 (47%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + + +D IG R+++ R +KG SQ + G L+G N+ +S+ E G+T + K+ Sbjct: 12 IETQPEIDYVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLA 71 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 V +K+ D+ SI + KK Sbjct: 72 FVLEKNFDYFLLDTPYAKCDSIIDNEIAAKLKK 104 >gi|225387793|ref|ZP_03757557.1| hypothetical protein CLOSTASPAR_01563 [Clostridium asparagiforme DSM 15981] gi|225046079|gb|EEG56325.1| hypothetical protein CLOSTASPAR_01563 [Clostridium asparagiforme DSM 15981] Length = 176 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 38/79 (48%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R+ N+ +Q+E+ + +S + +E G+ + + L N Y++S D Sbjct: 3 ELGKKIKMVREYNDLSQEELGAVVQKTKSTIGRYEKGLMEIPAKVIIDLCNYYQLSLDAF 62 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + +++ L Sbjct: 63 VESAYYASHQQNLEKNVSL 81 Score = 41.1 bits (95), Expect = 0.093, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++K +R+ +SQ E G ++ ST+ YE+G K + + LD Sbjct: 1 MIELGKKIKMVREYNDLSQEELGAVVQKTKSTIGRYEKGLMEIPAKVIIDLCNYYQLSLD 60 Query: 171 WIY 173 Sbjct: 61 AFV 63 >gi|223041672|ref|ZP_03611869.1| hypothetical protein AM202_0280 [Actinobacillus minor 202] gi|223017536|gb|EEF15950.1| hypothetical protein AM202_0280 [Actinobacillus minor 202] Length = 234 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++VG I+ RK T + + + S ++ +E G I + ++ Sbjct: 2 NINQEVGQLIRLARKKRGLTLNDFSKLIYKNPSTISKYEKGEIIIDIPTLYAISKALDVE 61 Query: 87 FDWIY 91 D + Sbjct: 62 MDQLL 66 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ RK +G++ +F KL+ ST+S YE+G I +I I + +D + Sbjct: 11 IRLARKKRGLTLNDFSKLIYKNPSTISKYEKGEIIIDIPTLYAISKALDVEMDQLL 66 >gi|254385485|ref|ZP_05000812.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194344357|gb|EDX25323.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 192 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 29/79 (36%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ PE +VG I+ RK + +A G+ + ++ E G+ + S+ Sbjct: 1 MVSRPEPTPEAVEVGRVIRAWRKRRGISMASLAAGSGLSQPFLSQLERGLATPSLSSIYR 60 Query: 79 LRNEYEISFDWIYDGEVID 97 + +++ Sbjct: 61 IAEALDVTPGTFLRPPDRP 79 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ RK +G+S G+ LS E+G P + +I + Sbjct: 18 IRAWRKRRGISMASLAAGSGLSQPFLSQLERGLATPSLSSIYRIAEALDVTPGTFL 73 >gi|148257853|ref|YP_001242438.1| putative phage-related transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410026|gb|ABQ38532.1| putative Phage-related transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 143 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 + RK +Q ++A + ++ E G S ++ L + +++ D + Sbjct: 68 LAFFRKKRGLSQDDLAKRVGITQGYLSEIEGGRKSGDVQTLRKLADALKVTIDSLVPDGP 127 Query: 96 IDRRYEDVTNKKR 108 + + KKR Sbjct: 128 SEAESPRPSTKKR 140 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A L RK +G+SQ + K +G+ LS E GR +++ RK+ K +D Sbjct: 61 FLAAKTPLAFFRKKRGLSQDDLAKRVGITQGYLSEIEGGRKSGDVQTLRKLADALKVTID 120 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + VP A+ + S K +K Sbjct: 121 SL-------VPDGPSEAESPRPSTKKRK 141 >gi|75761940|ref|ZP_00741861.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898416|ref|YP_002446827.1| DNA-binding protein [Bacillus cereus G9842] gi|74490571|gb|EAO53866.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540574|gb|ACK92968.1| DNA-binding protein [Bacillus cereus G9842] Length = 67 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK+ R N TQ+++A ++ E G + S++ A + + D I+ E Sbjct: 6 KIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDEIFIFE 65 Query: 95 VI 96 Sbjct: 66 DK 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+S+ E+G+ P ++ A I + +D Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDE 60 Query: 172 IYFGDE 177 I+ ++ Sbjct: 61 IFIFED 66 >gi|328949066|ref|YP_004366403.1| hypothetical protein Tresu_2237 [Treponema succinifaciens DSM 2489] gi|328449390|gb|AEB15106.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 111 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 4/111 (3%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K R+K ++ +N T ++A +S ++++E L L + +S Sbjct: 2 EGNKIFAERVKAEKEKHNLTTTQLAEKLGINKSRISMWETNGTIPRQDMLLKLCTLFNVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 D++ EV + + + +++L + K + F ++ G Sbjct: 62 SDYLLGNEVDMKSEQISSIQRKLSKLNPTD----LEKANNILDAAFAEIFG 108 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K+ ++ ++ + + LG+ S +S +E TIP K+ + D++ Sbjct: 7 FAERVKAEKEKHNLTTTQLAEKLGINKSRISMWETNGTIPRQDMLLKLCTLFNVSSDYLL 66 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 G+EV + + + SK + D + +N Sbjct: 67 -GNEVDMKSEQISSIQRKLSKLNPTDLEKAN 96 >gi|311894823|dbj|BAJ27231.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 191 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 23/77 (29%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + +K +R T +A + V E + S+ + L + +S Sbjct: 9 QALARNLKRLRLERGHTLDALAARSGVSRGMVVQIEQARTNPSVGTVVRLADALGVSIAR 68 Query: 90 IYDGEVIDRRYEDVTNK 106 + D + Sbjct: 69 LLDYDASSEVRITPVED 85 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L A+ LK +R ++G + G+ + EQ RT P + ++ Sbjct: 5 DLVTQALARNLKRLRLERGHTLDALAARSGVSRGMVVQIEQARTNPSVGTVVRLADALGV 64 Query: 168 HLDWIYFGD 176 + + D Sbjct: 65 SIARLLDYD 73 >gi|317055071|ref|YP_004103538.1| XRE family transcriptional regulator [Ruminococcus albus 7] gi|315447340|gb|ADU20904.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 67 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 32/67 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ TR+K++R + + Q ++A + E G + S++ A+ + + +S + Sbjct: 1 MPELKTRLKELRASRDMKQGDLAELVGVRRETIIRLEKGQYNPSLKLAMDIAAVFGVSVE 60 Query: 89 WIYDGEV 95 I+ E Sbjct: 61 EIFSFED 67 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R + M Q + +L+G+ T+ E+G+ P +K A I V ++ Sbjct: 1 MPELKTRLKELRASRDMKQGDLAELVGVRRETIIRLEKGQYNPSLKLAMDIAAVFGVSVE 60 Query: 171 WIYFGDE 177 I+ ++ Sbjct: 61 EIFSFED 67 >gi|260550789|ref|ZP_05824996.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406099|gb|EEW99584.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 210 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Query: 13 SLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 SL Y++ + + Q+ VGT I+ +R +Q+E+A A + E G + S Sbjct: 22 SLLTYSMSQSSTVLQH---VGTNIRSLRDERGLSQQELADQAGVSRRTIAALETGQVNIS 78 Query: 73 IRYALYLRNEYEIS 86 + + ++ Sbjct: 79 LAKLDAIAIVLGVN 92 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++S+R ++G+SQ E G+ T++ E G+ + I V + F Sbjct: 41 NIRSLRDERGLSQQELADQAGVSRRTIAALETGQVNISLAKLDAIAIVLGVN-----FRT 95 Query: 177 EVIVPKSIKRAKGNQSSKKSKKDKKSS 203 V P+ + A N + + +K++ + Sbjct: 96 IVSAPEHKEHALVNVLAWQGEKEESKA 122 >gi|163734588|ref|ZP_02142027.1| helix-turn-helix domain protein, putative [Roseobacter litoralis Och 149] gi|161392081|gb|EDQ16411.1| helix-turn-helix domain protein, putative [Roseobacter litoralis Och 149] Length = 135 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 4/122 (3%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 + ++ PE + G R+ R+ + TQ E+A + + +EN + Sbjct: 1 MDDFKDWYGPETATF----GDRLAAARETSEMTQAELARRLGVRVATLRSWENDLSEPRA 56 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + +S W+ +G+ + ++ +R D + G Sbjct: 57 NRLSMMAGLLNVSMMWLINGQGEGLDAPMEERTLPASASEVLNEMRELRTDMMARVEQMG 116 Query: 134 KL 135 +L Sbjct: 117 RL 118 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 32/78 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L + R+ M+Q E + LG+ +TL ++E + P + + + W+ G Sbjct: 19 LAAARETSEMTQAELARRLGVRVATLRSWENDLSEPRANRLSMMAGLLNVSMMWLINGQG 78 Query: 178 VIVPKSIKRAKGNQSSKK 195 + ++ S+ + Sbjct: 79 EGLDAPMEERTLPASASE 96 >gi|111024214|ref|YP_707186.1| DNA-binding protein [Rhodococcus jostii RHA1] gi|110823744|gb|ABG99028.1| possible DNA-binding protein [Rhodococcus jostii RHA1] Length = 184 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ R+ + + E+A A +S ++ E+G + S+ L ++ + Sbjct: 10 IGPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVQMSQLL 69 Query: 92 DGEVIDRRYEDVTNKKRL 109 D + L Sbjct: 70 DPPRPRVQVIRADEGPEL 87 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ R+ GMS E + G+ STLS E G P ++ + + + D Sbjct: 14 LRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVQMSQLL--DP 71 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKSS 203 + RA + D +++ Sbjct: 72 PRPRVQVIRADEGPELTSDRSDYRAT 97 >gi|114569063|ref|YP_755743.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339525|gb|ABI64805.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 72 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I ++++R G M+Q + + +G+ T+ EQG+ P ++ A KI +V K LD + Sbjct: 7 ITNEIRTLRFHAGEMTQADLARQVGVTRQTIIAIEQGKYSPSLEVAFKIARVFKVGLDAV 66 Query: 173 Y 173 + Sbjct: 67 F 67 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I+ +R TQ ++A + E G S S+ A + +++ D + Sbjct: 7 ITNEIRTLRFHAGEMTQADLARQVGVTRQTIIAIEQGKYSPSLEVAFKIARVFKVGLDAV 66 Query: 91 YDGEVI 96 + Sbjct: 67 FQYPPE 72 >gi|85375066|ref|YP_459128.1| DNA-binding protein, putative [Erythrobacter litoralis HTCC2594] gi|84788149|gb|ABC64331.1| DNA-binding protein, putative [Erythrobacter litoralis HTCC2594] Length = 220 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 5/126 (3%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDV-----GTRIKDIRKANNKTQKEMAIGANQ 56 F+ P + +L + + + I P+ + G R+ +R+ T ++A Sbjct: 90 FVEPLPQKALSAAKLKSAIAQPDAAILPPGIDRASLGKRLATMRQERGLTLAQVAEELGV 149 Query: 57 LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + V +E+ + +S + G + + + + A G Sbjct: 150 SKPTVWAWEHDRSQPVASRISAIAEVLGVSEIELATGRDTSQAEHAIAETREMIAKAYGC 209 Query: 117 RLKSIR 122 + +R Sbjct: 210 TPQQVR 215 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 35/74 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D ++G RL ++R+++G++ + + LG+ T+ +E R+ P I +V Sbjct: 120 IDRASLGKRLATMRQERGLTLAQVAEELGVSKPTVWAWEHDRSQPVASRISAIAEVLGVS 179 Query: 169 LDWIYFGDEVIVPK 182 + G + + Sbjct: 180 EIELATGRDTSQAE 193 >gi|21223966|ref|NP_629745.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|3192004|emb|CAA19403.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 71 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ IR+ TQ ++A +A++ +ENG + + + D Sbjct: 11 LRQIRRQRGVTQYKLAASLGVHNTAISHYENGHRRPDVETLATIADVLGARMDDFVT 67 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ IR+ +G++Q + LG+ N+ +S+YE G P+++ I V +D Sbjct: 6 FSPDALRQIRRQRGVTQYKLAASLGVHNTAISHYENGHRRPDVETLATIADVLGARMDDF 65 Query: 173 YF 174 Sbjct: 66 VT 67 >gi|325298681|ref|YP_004258598.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318234|gb|ADY36125.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 191 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 30/97 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IKD+R A + E+A + EN + S+ L + + Sbjct: 7 IGEKIKDLRTAKEISIDELAERTGLTAGQIERIENNIDIPSLAPLLKIARALGVRLGTFL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + + + D + R+ Sbjct: 67 DDQSEEDGPVVCRRGEADDTISFSNNAVDARQHMHYH 103 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K +R K +S E + G+ + E IP + P KI + L Sbjct: 9 EKIKDLRTAKEISIDELAERTGLTAGQIERIENNIDIPSLAPLLKIARALGVRLGTFLDD 68 Query: 176 D-EVIVPKSIKRAKGNQS 192 E P +R + + + Sbjct: 69 QSEEDGPVVCRRGEADDT 86 >gi|317051592|ref|YP_004112708.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316946676|gb|ADU66152.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 147 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE-ISFDW 89 ++ R+K++R+ N Q + A + ++ E G + +I + + N E W Sbjct: 3 EISRRMKELREGLNLNQVKFAKLLGTSNTIISDIERGSRNPTIDLLIKIANTVEGTDLHW 62 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 I G+ + ++ + Sbjct: 63 ILTGKRSPANQQIDSDNASI 82 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ-VTKKHL 169 I R+K +R+ ++Q++F KLLG N+ +S+ E+G P I KI V L Sbjct: 1 MSEISRRMKELREGLNLNQVKFAKLLGTSNTIISDIERGSRNPTIDLLIKIANTVEGTDL 60 Query: 170 DWIYFGDEVIVPKSIKRAKGN 190 WI G + I + Sbjct: 61 HWILTGKRSPANQQIDSDNAS 81 >gi|326204880|ref|ZP_08194733.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984929|gb|EGD45772.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 133 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +R ++QK++A + A++ +E G + + + +S D++ Sbjct: 4 LSERVKSLRNVKGQSQKDVAKALGKSREAISKYERGTRNLDPDAIILFAKYFNVSSDYML 63 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+KS+R KG SQ + K LG +S YE+G + + D Sbjct: 1 MNVLSERVKSLRNVKGQSQKDVAKALGKSREAISKYERGTRNLDPDAIILFAKYFNVSSD 60 Query: 171 WIY 173 ++ Sbjct: 61 YML 63 >gi|212696965|ref|ZP_03305093.1| hypothetical protein ANHYDRO_01528 [Anaerococcus hydrogenalis DSM 7454] gi|212676053|gb|EEB35660.1| hypothetical protein ANHYDRO_01528 [Anaerococcus hydrogenalis DSM 7454] Length = 212 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E +G IK+ R + N + K++A + S ++ E+G + S+ + Sbjct: 22 KEKGDQMDKLGKNIKNSRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQH 81 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKK 107 ++ ++ E IDR N + Sbjct: 82 LKVPMFTLFIEEDIDRPILVKKNNR 106 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 43/102 (42%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 + +K +G +K+ R + +S + + + + S LS E G+ P + Sbjct: 16 FSKTNLKEKGDQMDKLGKNIKNSRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTL 75 Query: 159 RKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + I Q K + ++ +++ P +K+ + + K + K Sbjct: 76 KLISQHLKVPMFTLFIEEDIDRPILVKKNNRIRITNKGEDSK 117 >gi|212640067|ref|YP_002316587.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561547|gb|ACJ34602.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 126 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 36/89 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK + N QK++ Q +S +N NG + + + + ++S DW+ Sbjct: 14 ISKRIKQRLEQLNLKQKDLVEQTGQPKSTINKIVNGTVTPRVDLLIPISKVLDVSIDWLV 73 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 E R + + ++ + A K Sbjct: 74 ANEREKRHHYESELEEEIINILRHASKKE 102 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 30/91 (32%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R+K + + Q + + G P ST++ G P + I +V +DW+ Sbjct: 13 VISKRIKQRLEQLNLKQKDLVEQTGQPKSTINKIVNGTVTPRVDLLIPISKVLDVSIDWL 72 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + + KK Sbjct: 73 VANEREKRHHYESELEEEIINILRHASKKEK 103 >gi|209883668|ref|YP_002287525.1| transcriptional regulator of XRE family [Oligotropha carboxidovorans OM5] gi|209871864|gb|ACI91660.1| transcriptional regulator of XRE family [Oligotropha carboxidovorans OM5] Length = 148 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG+R++ R +Q+++ + +E G + + ++ + Sbjct: 23 KYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIADILQVPVSF 82 Query: 90 IYDGEVIDRRYED-----VTNKKRLDPYAIGARLKSIRKDKGMS 128 +++G D + D A L R ++ Sbjct: 83 LFEGGPSSNVILDGLGEAPSPAYVSDFLATSEGLALTRAFTRIT 126 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + +D Y +R++ R G+SQ + G LG+ + YE+G Sbjct: 3 LSADSWGCSVMSAKTPNPVDKYVG-SRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGT 61 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFG 175 +I + + + +++ G Sbjct: 62 NRIGASRLHQIADILQVPVSFLFEG 86 >gi|320106693|ref|YP_004182283.1| XRE family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925214|gb|ADV82289.1| transcriptional regulator, XRE family [Terriglobus saanensis SP1PR4] Length = 71 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I ++++R + G++Q E L+G+ T++ E + P ++ A +I +V K L+ ++ Sbjct: 5 IRNNIRNLRAEAGLTQQELADLIGVTRQTVNAIEGDKYSPTLEAAFRIAEVLKVPLESVF 64 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I+++R TQ+E+A VN E S ++ A + ++ + ++ Sbjct: 5 IRNNIRNLRAEAGLTQQELADLIGVTRQTVNAIEGDKYSPTLEAAFRIAEVLKVPLESVF 64 >gi|303327832|ref|ZP_07358272.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp. 3_1_syn3] gi|302862193|gb|EFL85127.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp. 3_1_syn3] Length = 227 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 5/131 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++ R ++++A + + +ENG +A+ L S DW+ Sbjct: 15 FAERLRQRRVQLALRKQDLAAQVGVSLTTIQQYENGQ-LPKGEFAVRLSEALRCSLDWLL 73 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G+ T + RL + R G E G + + ++ + Sbjct: 74 AGKGDADGDVLDTPEARLVMVPMV----EARLSAGTGSFETGGEILRHYAFRWDFLHRKG 129 Query: 152 IPEIKPARKIK 162 P ++ Sbjct: 130 NPAQMVLLRVS 140 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RL+ R + + + +G+ +T+ YE +P+ + A ++ + + LD Sbjct: 12 HSGFAERLRQRRVQLALRKQDLAAQVGVSLTTIQQYEN-GQLPKGEFAVRLSEALRCSLD 70 Query: 171 WIYFGD 176 W+ G Sbjct: 71 WLLAGK 76 >gi|301053933|ref|YP_003792144.1| putative MerR family transcriptional regulator [Bacillus anthracis CI] gi|300376102|gb|ADK05006.1| possible transcriptional regulator, MerR family [Bacillus cereus biovar anthracis str. CI] Length = 186 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 28/87 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RK N T +E A A S ++ E G + S+ + + ++ Sbjct: 6 LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E+ ++ + Sbjct: 66 INEIDTDSLISKKKDRKKVYRENSDHI 92 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ +E+ Sbjct: 13 YRKKNKMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLFI-NEIDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENSD 90 >gi|294629900|ref|ZP_06708460.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] gi|292833233|gb|EFF91582.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] Length = 286 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDH 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHSFGD 94 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 >gi|228939741|ref|ZP_04102322.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972604|ref|ZP_04133208.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979211|ref|ZP_04139554.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228780568|gb|EEM28792.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228787145|gb|EEM35120.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819973|gb|EEM66017.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940335|gb|AEA16231.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 116 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 1/99 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RIK IR N Q++ + + V+ FENG S + + + +++ Sbjct: 2 EMKDRIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFNVPVNYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 GE D D KK + L ++D + Q Sbjct: 62 -YGENKDDHSSDDKYKKFKEIMEWLEPLPKDKEDMALEQ 99 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 37/77 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K IR D M+Q +FGK + + T+S +E G+ P + KI + +++ Sbjct: 1 MEMKDRIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFNVPVNY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 +Y ++ K K Sbjct: 61 LYGENKDDHSSDDKYKK 77 >gi|226322725|ref|ZP_03798243.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758] gi|225208886|gb|EEG91240.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758] Length = 194 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI++ RK T + + +++ E S ++ + +I + Sbjct: 7 IGERIRECRKKKMMTIRVLGEYTGLSAGYLSMLEQNKTSPNVDSLARICEALDIDIQYAL 66 Query: 92 DGEVI 96 +GE+ Sbjct: 67 EGEMP 71 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 LD IG R++ RK K M+ G+ G+ LS EQ +T P + +I + Sbjct: 1 MLDLAHIGERIRECRKKKMMTIRVLGEYTGLSAGYLSMLEQNKTSPNVDSLARICEALDI 60 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQ 191 + + G E+ I R + ++ Sbjct: 61 DIQYALEG-EMPGKTVIHREEMSK 83 >gi|289582562|ref|YP_003481028.1| XRE family transcriptional regulator [Natrialba magadii ATCC 43099] gi|289532115|gb|ADD06466.1| transcriptional regulator, XRE family [Natrialba magadii ATCC 43099] Length = 79 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 25/63 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ + R+ +Q ++A + +N E S+ A L +E + +++ Sbjct: 3 NQLTERREEAGLSQGDLAEAVDVTRQTINAIERERYDPSLELAFKLAAFFECHIEELFEP 62 Query: 94 EVI 96 + Sbjct: 63 DFE 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 37/77 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +L R++ G+SQ + + + + T++ E+ R P ++ A K+ + H++ ++ Sbjct: 1 MENQLTERREEAGLSQGDLAEAVDVTRQTINAIERERYDPSLELAFKLAAFFECHIEELF 60 Query: 174 FGDEVIVPKSIKRAKGN 190 D + + + N Sbjct: 61 EPDFELDLTPVSELESN 77 >gi|224824341|ref|ZP_03697449.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603760|gb|EEG09935.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 194 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + RI +RK+ + +++A + S ++L E S + L + +S Sbjct: 2 NLDTRLAKRIHSLRKSRAYSLEKLAELSGVSRSMISLIERAETSATAAVLNKLADALGVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 ++ E + ++ + + A Sbjct: 62 LASLFSEEAEELVASPLSRAEEQPVWQDPA 91 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ S+RK + S + +L G+ S +S E+ T K+ L ++ Sbjct: 9 KRIHSLRKSRAYSLEKLAELSGVSRSMISLIERAETSATAAVLNKLADALGVSLASLFSE 68 Query: 176 D-EVIVPKSIKRAKGN 190 + E +V + RA+ Sbjct: 69 EAEELVASPLSRAEEQ 84 >gi|239817492|ref|YP_002946402.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239804069|gb|ACS21136.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 120 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ R+ TQ E+A A S ++ E G + S+ L +I+ ++ Sbjct: 26 LGRNLRYFREQAGLTQVELAFDAEVERSRISKIERGHVNPSLLTLATLCYCLKITLPTLF 85 Query: 92 DG 93 +G Sbjct: 86 EG 87 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 5/97 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G L+ R+ G++Q+E + S +S E+G P + + K L Sbjct: 24 LALGRNLRYFREQAGLTQVELAFDAEVERSRISKIERGHVNPSLLTLATLCYCLKITLPT 83 Query: 172 IYFG-DEVIVPK----SIKRAKGNQSSKKSKKDKKSS 203 ++ G E + P ++R+ S+K + Sbjct: 84 LFEGMKETLAPSWKGGELRRSNQAVLVASSEKSRGHR 120 >gi|153012131|ref|YP_001373341.1| cupin 2 domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151564019|gb|ABS17512.1| Cupin 2 conserved barrel domain protein [Ochrobactrum anthropi ATCC 49188] Length = 202 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RI+ R+ T ++ + A++ E G+ S ++R + +S + Sbjct: 22 DIGARIRLRRQTLGLTLGYLSEVSGLSTGALSQIERGLVSPTVRTLYTIAEVLSMSPAQL 81 Query: 91 YDGEVIDRRYEDVT 104 D + Sbjct: 82 IDPQGFAAAARANP 95 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 +V + D IGAR++ R+ G++ ++ G+ LS E+G P Sbjct: 3 KVNKAEISPTSEPAPNDAGDIGARIRLRRQTLGLTLGYLSEVSGLSTGALSQIERGLVSP 62 Query: 154 EIKPARKIKQVTKKHLDWIY 173 ++ I +V + Sbjct: 63 TVRTLYTIAEVLSMSPAQLI 82 >gi|95929475|ref|ZP_01312218.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95134591|gb|EAT16247.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 307 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK--PARKIKQVTKKHLDWIYFG 175 ++ R+D+ ++Q+ K++G+ T+S +E R P IK A K+ + + LD I + Sbjct: 20 IRQAREDQSLTQLYVAKMVGVTTDTISRWENNRY-PTIKRPNAEKLAEALEVPLDQILWQ 78 Query: 176 DEVIVPKSIKRA 187 +E + P+ R+ Sbjct: 79 EEEV-PQPQTRS 89 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR--YALYLRNEYEISFDWI 90 G I+ R+ + TQ +A ++ +EN +I+ A L E+ D I Sbjct: 17 GAAIRQAREDQSLTQLYVAKMVGVTTDTISRWENNRY-PTIKRPNAEKLAEALEVPLDQI 75 Query: 91 YDGEVIDRRYEDVTN 105 E + + + Sbjct: 76 LWQEEEVPQPQTRSW 90 >gi|58699142|ref|ZP_00373967.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534342|gb|EAL58516.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 312 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 41/141 (29%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + +G +IK+ R TQK++A + ++ +E G + + + Sbjct: 161 VEEKTGSIYYQIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIA 220 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 IS + E E K ++ K S + + Sbjct: 221 ETLSISITDLLIEEDEIVESELPDLIKEYKKIESQELRYALIKSLFESIQICEEKVKRAE 280 Query: 141 STLSNYEQGRTIPEIKPARKI 161 + + +I Sbjct: 281 KMKIAKDLVKGGISTDIILQI 301 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 3/99 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ R TQK++A V +E G SI + + + Sbjct: 18 KIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDL 77 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGM 127 ++ ++ L+ + + +RK + Sbjct: 78 IPV-SSEKICLKNEEEEILNLVRKYKTINDQELRKVFYL 115 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 1/115 (0%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 IS D I + E V K Y IG ++K R + +Q + + + + Sbjct: 143 GISVD-IVSQAIGLSANECVEEKTGSIYYQIGKKIKEWRLVREYTQKDLAEKMDTTRDEI 201 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 SNYEQGR ++ I + + + ++ IV + +S++ Sbjct: 202 SNYEQGRVAIPLEKLYAIAETLSISITDLLIEEDEIVESELPDLIKEYKKIESQE 256 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y I +++S R +G +Q + +G+ + YE+G I+ I +V + Sbjct: 17 YKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIID 76 Query: 172 IY 173 + Sbjct: 77 LI 78 >gi|300788896|ref|YP_003769187.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299798410|gb|ADJ48785.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 77 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI +R + +++++A + E G S S+ AL + +E+S + ++ Sbjct: 7 NRIAMLRAERSISRRQLAEALGVHYQTIGYLERGEYSPSLFLALRIAEFFEVSVEVLFST 66 Query: 94 EVIDR 98 + R Sbjct: 67 KPFPR 71 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 31/61 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+ +R ++ +S+ + + LG+ T+ E+G P + A +I + + ++ + Sbjct: 4 VVYNRIAMLRAERSISRRQLAEALGVHYQTIGYLERGEYSPSLFLALRIAEFFEVSVEVL 63 Query: 173 Y 173 + Sbjct: 64 F 64 >gi|297560997|ref|YP_003679971.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845445|gb|ADH67465.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 187 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 23/60 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + ++++R+A + +A + ++ ENG + L I+ + Sbjct: 9 LASTLRELRRARGLSGGALAELSGVSRGMISRIENGEAQPTASLLGRLAAALGITLSELI 68 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ + L+ +R+ +G+S +L G+ +S E G P ++ L + Sbjct: 8 ALASTLRELRRARGLSGGALAELSGVSRGMISRIENGEAQPTASLLGRLAAALGITLSEL 67 Query: 173 YFGDEVIVPKSIK 185 E + ++ Sbjct: 68 IARAEQGDRRLVR 80 >gi|225018471|ref|ZP_03707663.1| hypothetical protein CLOSTMETH_02418 [Clostridium methylpentosum DSM 5476] gi|224948780|gb|EEG29989.1| hypothetical protein CLOSTMETH_02418 [Clostridium methylpentosum DSM 5476] Length = 79 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 37/78 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+K R+ G++Q G+L+G+ ++ E + P I A I +V + ++ Sbjct: 1 MDEMKNRIKEFREKLGLTQKRLGELIGVSRQAVNAIETEKFEPSIWIAYDIAKVFECAIE 60 Query: 171 WIYFGDEVIVPKSIKRAK 188 ++ ++ ++++ Sbjct: 61 DVFLFEDSPHKSRAEKSR 78 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RIK+ R+ TQK + AVN E SI A + +E + + + Sbjct: 3 EMKNRIKEFREKLGLTQKRLGELIGVSRQAVNAIETEKFEPSIWIAYDIAKVFECAIEDV 62 Query: 91 YDGEVIDRRYEDVTNKK 107 + E + +++ Sbjct: 63 FLFEDSPHKSRAEKSRR 79 >gi|217960750|ref|YP_002339314.1| DNA-binding protein [Bacillus cereus AH187] gi|217064586|gb|ACJ78836.1| DNA-binding protein [Bacillus cereus AH187] Length = 67 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK+ R N TQ+++A ++ E G + S++ A + + D ++ E Sbjct: 6 RIKEYRAKLNMTQEDLAKNVGVRRETISHLEKGKYNPSLQLAYDIAKALHSTIDEVFIFE 65 Query: 95 VI 96 Sbjct: 66 DK 67 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A R+K R M+Q + K +G+ T+S+ E+G+ P ++ A I + +D Sbjct: 1 MAFITRIKEYRAKLNMTQEDLAKNVGVRRETISHLEKGKYNPSLQLAYDIAKALHSTIDE 60 Query: 172 IYFGDE 177 ++ ++ Sbjct: 61 VFIFED 66 >gi|297618899|ref|YP_003707004.1| XRE family transcriptional regulator [Methanococcus voltae A3] gi|297377876|gb|ADI36031.1| transcriptional regulator, XRE family [Methanococcus voltae A3] Length = 64 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK R N+ TQ E+A ++ E G S+ A L + + + I+ Sbjct: 3 NKIKVFRAMNDLTQDELAKKIGVTRQTISAIEKGKYDPSLIIAFKLSKLFNVKIEEIFLY 62 Query: 94 EV 95 E Sbjct: 63 EE 64 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K R ++Q E K +G+ T+S E+G+ P + A K+ ++ ++ I+ Sbjct: 1 MENKIKVFRAMNDLTQDELAKKIGVTRQTISAIEKGKYDPSLIIAFKLSKLFNVKIEEIF 60 Query: 174 FGDE 177 +E Sbjct: 61 LYEE 64 >gi|139438180|ref|ZP_01771733.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] gi|133776377|gb|EBA40197.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] Length = 137 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I+ RK TQ ++A E AV +E+G+ + + +S + + Sbjct: 3 VGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIAAALGVSVNAL 61 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G ++ RK +GM+Q + + +G+ + +YE G + + I ++ Sbjct: 1 MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIAAALGVSVNA 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|332363049|gb|EGJ40836.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 108 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +++ + R+K++R + Q E+A A ++L E G + SI A + + + Sbjct: 36 KEFMMQLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIAFKIAHIFNE 95 Query: 86 SFD 88 S + Sbjct: 96 SVE 98 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E +L G+ T+S E+G P I A KI + + ++ Sbjct: 39 MMQLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIAFKIAHIFNESVE 98 Query: 171 WIY 173 ++ Sbjct: 99 NVF 101 >gi|324993316|gb|EGC25236.1| transcriptional regulator [Streptococcus sanguinis SK405] gi|325694019|gb|EGD35937.1| transcriptional regulator [Streptococcus sanguinis SK150] gi|327461585|gb|EGF07916.1| transcriptional regulator [Streptococcus sanguinis SK1] gi|327473309|gb|EGF18729.1| transcriptional regulator [Streptococcus sanguinis SK408] gi|327489444|gb|EGF21237.1| transcriptional regulator [Streptococcus sanguinis SK1058] Length = 108 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + R+K++R + Q E+A A ++L E G + SI AL + + + Sbjct: 36 KEFMMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFN 94 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E KL G+ T+S E+G P I A KI + ++++ Sbjct: 39 MMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVE 98 Query: 171 WIY 173 ++ Sbjct: 99 NVF 101 >gi|325261432|ref|ZP_08128170.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032886|gb|EGB94163.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 68 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++D+R ++ TQK++A +E G + I Y + L + Y+ S D+I Sbjct: 4 KRLEDLRVDHDLTQKQIADHLGIQREVYRRYEKGTHTIPIDYLIKLADLYKTSVDYII 61 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +R D ++Q + LG+ YE+G I K+ + K +D+I Sbjct: 1 MYFKRLEDLRVDHDLTQKQIADHLGIQREVYRRYEKGTHTIPIDYLIKLADLYKTSVDYI 60 Query: 173 Y 173 Sbjct: 61 I 61 >gi|323435994|ref|ZP_01049570.2| transcription regulator [Dokdonia donghaensis MED134] gi|321496309|gb|EAQ39542.2| transcription regulator [Dokdonia donghaensis MED134] Length = 274 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 5/95 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I ++R+ TQ+E+ N + E G + + + + D Sbjct: 4 QPELGQKILELRQQKGLTQEELVAQCNISVRTIQRIEAGETMPRVYTIKTILSALDRDLD 63 Query: 89 WI-----YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ +V ++ K + + Sbjct: 64 DLQEDTIFEAKVKKAMLFEIDESKDVSYLFKQLHI 98 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + +G ++ +R+ KG++Q E + T+ E G T+P + + I + Sbjct: 1 MMKQPELGQKILELRQQKGLTQEELVAQCNISVRTIQRIEAGETMPRVYTIKTILSALDR 60 Query: 168 HLDWIYFGDEVIVPKSIKRA 187 LD + ++ I +K+A Sbjct: 61 DLDDL--QEDTIFEAKVKKA 78 >gi|312888142|ref|ZP_07747725.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299409|gb|EFQ76495.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 69 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 35/67 (52%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + VG+RI++IR+ N +QK+++ A+ S + ENG + SI + +++ Sbjct: 2 EIKSKVGSRIREIREKNGISQKDLSYTADLDRSYIASVENGQRNISIVNLEKIAKALKVN 61 Query: 87 FDWIYDG 93 ++ G Sbjct: 62 LSELFQG 68 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R++ IR+ G+SQ + + S +++ E G+ I KI + K +L ++ G Sbjct: 9 SRIREIREKNGISQKDLSYTADLDRSYIASVENGQRNISIVNLEKIAKALKVNLSELFQG 68 >gi|290769910|gb|ADD61680.1| putative protein [uncultured organism] Length = 209 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + + K+ A+G L+ + Sbjct: 64 VSIEWL-KGETDEYETDITDKKELQIRDAMGDILQQL 99 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 K R + ++Q + +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL-KGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 DEYETDITDKKE 85 >gi|218132385|ref|ZP_03461189.1| hypothetical protein BACPEC_00244 [Bacteroides pectinophilus ATCC 43243] gi|217992723|gb|EEC58725.1| hypothetical protein BACPEC_00244 [Bacteroides pectinophilus ATCC 43243] Length = 121 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 28/73 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K+ G R+ ++RK TQ+++A V E G SI A Y + D+ Sbjct: 22 KESGKRLSELRKMKGLTQQQVADELGIDVDTVRKNEQGRRGLSIDTASMYAEYYHSTIDY 81 Query: 90 IYDGEVIDRRYED 102 I G+ Sbjct: 82 ITHGKESSNDEVT 94 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 36/98 (36%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 D G RL +RK KG++Q + LG+ T+ EQGR I A Sbjct: 13 KEEYMYYDIKESGKRLSELRKMKGLTQQQVADELGIDVDTVRKNEQGRRGLSIDTASMYA 72 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + +D+I G E + ++K K Sbjct: 73 EYYHSTIDYITHGKESSNDEVTAMLAEYPEEVRNKAAK 110 >gi|169628144|ref|YP_001701793.1| putative transcription regulator protein [Mycobacterium abscessus ATCC 19977] gi|169240111|emb|CAM61139.1| Putative transcription regulator protein [Mycobacterium abscessus] Length = 173 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 27/64 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R+ T +E+ +S ++ E + S+ A+ + ++ ++ + Sbjct: 5 VRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLFTNDA 64 Query: 96 IDRR 99 + R Sbjct: 65 YESR 68 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++++R+++G++ E G G+ S LS E+ + P + A +I + ++ D Sbjct: 5 VRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLFTND 63 >gi|114770339|ref|ZP_01447877.1| hypothetical protein OM2255_11900 [alpha proteobacterium HTCC2255] gi|114549176|gb|EAU52059.1| hypothetical protein OM2255_11900 [alpha proteobacterium HTCC2255] Length = 468 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R+K IR + +Q MA + S +NL E +++ L L Y IS + + Sbjct: 9 GPRVKKIRNSIGLSQSAMANELDISPSYLNLIERNQRPITVQLILKLSKTYNISPEEL 66 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + G R+K IR G+SQ L + S L+ E+ + ++ K+ + Sbjct: 1 MNIQKIFAGPRVKKIRNSIGLSQSAMANELDISPSYLNLIERNQRPITVQLILKLSKTYN 60 Query: 167 KHLDWI 172 + + Sbjct: 61 ISPEEL 66 >gi|28379435|ref|NP_786327.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28272274|emb|CAD65187.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 273 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RI +R A + ++A +S +N +E G + + +++S + Sbjct: 6 QQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYFDVSTN 65 Query: 89 WIYDGEVIDRRYEDVTN 105 ++ G + + N Sbjct: 66 YLLYGSLTEYVTAVFQN 82 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVT 165 ++D +G R+ +R G+S + +G+ ST++++E+GRT+ K+ Sbjct: 1 MQIDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYF 60 Query: 166 KKHLDWIYFG 175 +++ +G Sbjct: 61 DVSTNYLLYG 70 >gi|319778353|ref|YP_004129266.1| Putative phage repressor [Taylorella equigenitalis MCE9] gi|317108377|gb|ADU91123.1| Putative phage repressor [Taylorella equigenitalis MCE9] Length = 110 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R + +Q ++A + + ENG ++ + L + +W+Y Sbjct: 8 LGDRVKIARINSKLSQIDLAKKTGLSQGTIAHIENGRNR-DTKHLMDLAKALSVRAEWLY 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 GE + + + + LK Sbjct: 67 YGEGNVKDTWPFRRISQNEYLQLNEVLKE 95 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K R + +SQI+ K G+ T+++ E GR + K + + +W+Y+G+ Sbjct: 12 VKIARINSKLSQIDLAKKTGLSQGTIAHIENGRNR-DTKHLMDLAKALSVRAEWLYYGE 69 >gi|313889792|ref|ZP_07823434.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121837|gb|EFR44934.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 182 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+ ++ TQ+E+A + +ENG A L + + +S ++ Sbjct: 2 NRLKKLREESSLTQQELAKKIGVHYRTIQNWENG-TQIKPEKAQMLADYFSVSVGYLLGY 60 Query: 94 EVIDRRYEDVTNKKR 108 E + Sbjct: 61 TDYKNTDEYFEENED 75 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +R++ ++Q E K +G+ T+ N+E T + + A+ + + ++ Sbjct: 1 MNRLKKLREESSLTQQELAKKIGVHYRTIQNWEN-GTQIKPEKAQMLADYFSVSVGYLL 58 >gi|255524793|ref|ZP_05391744.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185021|ref|ZP_06853432.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255511566|gb|EET87855.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296050803|gb|EFG90226.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 158 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 18/147 (12%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYALYLR 80 + + +G +IK R N +Q ++A + + +E +L L Sbjct: 26 KKLHISTIGEKIKYHRLLNGWSQFQLASKLGLSKKQGRYLIKDYETRRLCPPPELSLKLA 85 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 + I + Y N +++ + RK ++ + K + + Sbjct: 86 KIFRIDTKYFY------------DNYYEFLDSNYSSKILNWRKKYNLTITDAAKKIHVNY 133 Query: 141 STLSNYEQGRTIPEIKPARKIKQVTKK 167 T S++E+ + I + K+ + Sbjct: 134 VTWSSWEKNKKI-SRENYEKL-KALGI 158 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST----LSNYEQGRTIP 153 K+L IG ++K R G SQ + LG+ + +YE R P Sbjct: 17 NIDYRNELVKKLHISTIGEKIKYHRLLNGWSQFQLASKLGLSKKQGRYLIKDYETRRLCP 76 Query: 154 EIKPARKIKQVTKKHLDWIY 173 + + K+ ++ + + Y Sbjct: 77 PPELSLKLAKIFRIDTKYFY 96 >gi|258511714|ref|YP_003185148.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478440|gb|ACV58759.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 436 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +I+ +RKA TQ E+A G S ++ E+ S + ++ + Sbjct: 1 METLGQKIRALRKARGMTQSELARGLA-TASMISQIESDRTMPSAQLLAHIAARLGVDVS 59 Query: 89 WI 90 Sbjct: 60 EF 61 Score = 47.6 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++++RK +GM+Q E + L S +S E RT+P + I + Sbjct: 6 QKIRALRKARGMTQSELARGL-ATASMISQIESDRTMPSAQLLAHIAARLGVDVSEF 61 >gi|158317815|ref|YP_001510323.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158113220|gb|ABW15417.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 313 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 4/89 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+ + VG ++ R+ TQ +A AN ++ ENG + + L Sbjct: 31 AREPGRSVGALLRGWRERRRLTQLGLAERANVSTRRISFVENGRSRPTSEMIIMLSEHLG 90 Query: 85 ISFDW----IYDGEVIDRRYEDVTNKKRL 109 + + G E+ + Sbjct: 91 VPLRERNQLLLAGGYAPAYSENDLASPPM 119 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R+ + ++Q+ + + +S E GR+ P + + + L Sbjct: 42 LRGWRERRRLTQLGLAERANVSTRRISFVENGRSRPTSEMIIMLSEHLGVPL 93 >gi|71279897|ref|YP_269962.1| DNA-binding protein [Colwellia psychrerythraea 34H] gi|71145637|gb|AAZ26110.1| DNA-binding protein [Colwellia psychrerythraea 34H] Length = 179 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK +R + TQ ++A A+ + + E+ + SI + + +S D + Sbjct: 5 ISEGIKRLRAQHKLTQTKLADMADIPRATLANMESEQSNPSITLVVKVAQALGVSVDDLI 64 Query: 92 DGEV 95 + Sbjct: 65 SRQS 68 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +R ++Q + + +P +TL+N E ++ P I K+ Q +D + Sbjct: 7 EGIKRLRAQHKLTQTKLADMADIPRATLANMESEQSNPSITLVVKVAQALGVSVDDLISR 66 Query: 176 DEVIVPKSIKR 186 V + ++ Sbjct: 67 QSAHVTEVCRK 77 >gi|86136966|ref|ZP_01055544.1| hypothetical protein MED193_14867 [Roseobacter sp. MED193] gi|85826290|gb|EAQ46487.1| hypothetical protein MED193_14867 [Roseobacter sp. MED193] Length = 140 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 13/131 (9%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + +G R+ R +Q MA A + +E G + + + Sbjct: 1 MPQKHADLFAAMGARLTIARNEIGFSQAAMAEAIGVSPRAYHSYEKGQRGMPVEALVAMG 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKR----LDPYAIGARLKSIRKDKGMSQIEFGKLL 136 +E+ W+ G R D K LD + +K + +G Sbjct: 61 ERFEVDVPWLLLGTKSIRAGHDFEALKHIESSLDKHLTDEGIKIKSEKRGAI-------- 112 Query: 137 GMPNSTLSNYE 147 + S+ E Sbjct: 113 -VARWYQSHVE 122 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 7/98 (7%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+GARL R + G SQ + +G+ +YE+G+ ++ + + + + W+ Sbjct: 11 AMGARLTIARNEIGFSQAAMAEAIGVSPRAYHSYEKGQRGMPVEALVAMGERFEVDVPWL 70 Query: 173 YFGDEVIVP-------KSIKRAKGNQSSKKSKKDKKSS 203 G + I K I+ + + + K K Sbjct: 71 LLGTKSIRAGHDFEALKHIESSLDKHLTDEGIKIKSEK 108 >gi|326390747|ref|ZP_08212300.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993141|gb|EGD51580.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K++R TQKE+A V+ E G + A+ + N + + D I+ Sbjct: 2 NKLKELRMKYKLTQKELAKNLGITPDYVSQIERGRI-PGMETAIKIANFFNTTIDEIF 58 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +LK +R ++Q E K LG+ +S E+GR IP ++ A KI +D I+ Sbjct: 1 MNKLKELRMKYKLTQKELAKNLGITPDYVSQIERGR-IPGMETAIKIANFFNTTIDEIF 58 >gi|308175926|ref|YP_003915332.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743389|emb|CBT74361.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 65 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L RK+ G SQ LLG+ T+ + E+GR P + A K+ V ++ ++ Sbjct: 1 MQNNLSEYRKEHGFSQQALADLLGVSRQTIISLEKGRYDPSLPLAFKLSAVFGCKIEDLF 60 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + RK + +Q+ +A + E G S+ A L + + ++ Sbjct: 3 NNLSEYRKEHGFSQQALADLLGVSRQTIISLEKGRYDPSLPLAFKLSAVFGCKIEDLF 60 >gi|311747306|ref|ZP_07721091.1| putative transcriptional regulator [Algoriphagus sp. PR1] gi|126579020|gb|EAZ83184.1| putative transcriptional regulator [Algoriphagus sp. PR1] Length = 66 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK R NN TQ+++A N +N E G S AL + + +S + I++ E Sbjct: 5 IKVERAKNNLTQQDLAEKVNVSRQTINSIEAGKYVPSTVLALKISRVFNVSLEEIFELEE 64 Query: 96 ID 97 D Sbjct: 65 KD 66 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K R ++Q + + + + T+++ E G+ +P A KI +V L+ I+ Sbjct: 1 MKNTIKVERAKNNLTQQDLAEKVNVSRQTINSIEAGKYVPSTVLALKISRVFNVSLEEIF 60 Query: 174 FGDE 177 +E Sbjct: 61 ELEE 64 >gi|124004636|ref|ZP_01689480.1| HTH-type transcriptional regulator xre [Microscilla marina ATCC 23134] gi|123989759|gb|EAY29288.1| HTH-type transcriptional regulator xre [Microscilla marina ATCC 23134] Length = 123 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI IR+ +Q+++A +++ E G + S+ + + + +++W+ Sbjct: 7 IGDRIFAIRRKLKLSQQDVADKVGVSRPSLSQMETGTIAVSLHAIMKFVSLFNTTYEWLL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 G+ D + + LDP + ++ + Sbjct: 67 TGKG-DMFASEEERLEYLDPKILQEKISYL 95 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D Y IG R+ +IR+ +SQ + +G+ +LS E G + K + Sbjct: 3 DNYGIGDRIFAIRRKLKLSQQDVADKVGVSRPSLSQMETGTIAVSLHAIMKFVSLFNTTY 62 Query: 170 DWIYFGDEVIVPKSIKRAK 188 +W+ G + +R + Sbjct: 63 EWLLTGKGDMFASEEERLE 81 >gi|29828186|ref|NP_822820.1| regulatory protein [Streptomyces avermitilis MA-4680] gi|29605288|dbj|BAC69355.1| putative regulatory protein [Streptomyces avermitilis MA-4680] Length = 208 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + V +++ +R+ + T + A A + ++ E G S+ L L Y + Sbjct: 10 EDLPAVAPQLRALRRRASLTLEVAARAAGLSPAHLSRLETGQRQPSLPMLLALARIYGTT 69 Query: 87 FDWIY 91 + Sbjct: 70 VSELL 74 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+ +L+++R+ ++ + G+ + LS E G+ P + + ++ + Sbjct: 11 DLPAVAPQLRALRRRASLTLEVAARAAGLSPAHLSRLETGQRQPSLPMLLALARIYGTTV 70 Query: 170 DWIYFGDEVIVPKSIKRA 187 + G+ V ++ RA Sbjct: 71 SELL-GETVGDRDAVVRA 87 >gi|55822658|ref|YP_141099.1| restriction-modification system regulatory protein [Streptococcus thermophilus CNRZ1066] gi|55738643|gb|AAV62284.1| restriction-modification system regulatory protein, putative [Streptococcus thermophilus CNRZ1066] Length = 75 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G RIK++RK +Q++ A+ + E+G + S++ + + ++IS ++ Sbjct: 6 FGKRIKELRKQTGLSQEKFALKIGMDRTYYASIESGKRNVSLKNIEKIASGFDISISQLF 65 Query: 92 DG 93 G Sbjct: 66 IG 67 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + A G R+K +RK G+SQ +F +GM + ++ E G+ +K KI Sbjct: 1 MIQVAFGKRIKELRKQTGLSQEKFALKIGMDRTYYASIESGKRNVSLKNIEKIASGFDIS 60 Query: 169 LDWIYFG 175 + ++ G Sbjct: 61 ISQLFIG 67 >gi|110632911|ref|YP_673119.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283895|gb|ABG61954.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 106 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 1/98 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDW 89 G RIKD+R T +A +S + EN S + + ++ D+ Sbjct: 2 KFGERIKDLRTKKGFTLDHLAQETGSSKSYIWELENKNPPRPSAEKLSAIASALGVTVDY 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 ++ + + T R + IR+ + Sbjct: 62 LFGADAQTLGEAEDTAFFRQYSGLPEETRRQIREMARI 99 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLD 170 G R+K +R KG + + G S + E P + I +D Sbjct: 1 MKFGERIKDLRTKKGFTLDHLAQETGSSKSYIWELENKNPPRPSAEKLSAIASALGVTVD 60 Query: 171 WIYFGD 176 +++ D Sbjct: 61 YLFGAD 66 >gi|110638280|ref|YP_678489.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110280961|gb|ABG59147.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 259 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 27/78 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K RK TQ+++A S + +E G + L +E + D + Sbjct: 4 ISENVKYFRKQLGFTQEQLAQRIGIKRSLLGAYEEGRAEPGLETLTILARLFETTVDALI 63 Query: 92 DGEVIDRRYEDVTNKKRL 109 + D K + Sbjct: 64 SETLSDPGKRKEAMSKDI 81 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 7/100 (7%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +K RK G +Q + + +G+ S L YE+GR P ++ + ++ + +D Sbjct: 1 MSVISENVKYFRKQLGFTQEQLAQRIGIKRSLLGAYEEGRAEPGLETLTILARLFETTVD 60 Query: 171 WIYFGD-------EVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + + K I+ K + KD K + Sbjct: 61 ALISETLSDPGKRKEAMSKDIEGKKLRVLAITVDKDDKEN 100 >gi|332363711|gb|EGJ41491.1| transcription regulator [Streptococcus sanguinis SK49] Length = 136 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I LK IR+ ++Q + L + S ++ +E + IP+I I + L Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLGT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + D + K I+ +K + Sbjct: 61 LIKEDGRLEKKVIEDSKAKK 80 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +KDIR+ N TQ+ +A SA+ +E+ I + + E++IS + Sbjct: 2 KISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLGTL 61 Query: 91 YDGEVI 96 + Sbjct: 62 IKEDGR 67 >gi|322374196|ref|ZP_08048729.1| putative transcriptional repressor [Streptococcus sp. C150] gi|321276901|gb|EFX53973.1| putative transcriptional repressor [Streptococcus sp. C150] Length = 66 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R A + TQ+ +A ++ E G + +I + + + + D ++ Sbjct: 5 KLKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLF 61 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LKS R K ++Q +G+ T+S E+G P I I + K LD +++ E Sbjct: 6 LKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLFWESE 65 Query: 178 V 178 Sbjct: 66 D 66 >gi|304413958|ref|ZP_07395375.1| putative prophage repressor CI [Candidatus Regiella insecticola LSR1] gi|304283678|gb|EFL92073.1| putative prophage repressor CI [Candidatus Regiella insecticola LSR1] Length = 215 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ R TQK++A + + A+ ENG RY L N W+ Sbjct: 3 IADRVRSRRTELGLTQKDLAKRVDTSQQAIEQLENGKTK-RPRYLPELANALNCQLYWLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +G + +V + ++ Sbjct: 62 NGGEHKDKPNNVAYITPHKRTKVYPLIRWA 91 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I R++S R + G++Q + K + + E G+T + ++ L W Sbjct: 1 MSIADRVRSRRTELGLTQKDLAKRVDTSQQAIEQLENGKTK-RPRYLPELANALNCQLYW 59 Query: 172 IYFGDE 177 + G E Sbjct: 60 LLNGGE 65 >gi|299134081|ref|ZP_07027274.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298590828|gb|EFI51030.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 230 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 1/88 (1%) Query: 1 MFLNPFLETSLKSLQEYTLIITP-EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLES 59 + + F + ++ T + Q +G RI+ +RK +T +A + Sbjct: 11 LIIKSFRHNKRFEMTTTDILETGFKGEQEIDTLGRRIRQLRKMQERTLDSLAQEVGLTKG 70 Query: 60 AVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ E G + + L Sbjct: 71 YLSKVETGRQTPPLGTLSKLAKALGTDL 98 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E+ + K + +G R++ +RK + + + +G+ LS E GR P Sbjct: 23 EMTTTDILETGFKGEQEIDTLGRRIRQLRKMQERTLDSLAQEVGLTKGYLSKVETGRQTP 82 Query: 154 EIKPARKIKQVTKKHL 169 + K+ + L Sbjct: 83 PLGTLSKLAKALGTDL 98 >gi|288871456|ref|ZP_06117657.2| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288863406|gb|EFC95704.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 222 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 14/113 (12%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +G IK R +Q+ +A AV+ +E + L + Sbjct: 18 KEAIDMSLGENIKTKRNELKLSQEYVAEQLGVSRQAVSKWETDQSQPKAKNLTELATVFH 77 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 + + + + N R+++ S++ + LG Sbjct: 78 VGLSGLVEPQKYQAEQAAQEN--------------EWRENRNNSKMLCCRWLG 116 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 39/103 (37%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 K ++G +K+ R + +SQ + LG+ +S +E ++ P+ Sbjct: 7 YATTIPYKIRAKEAIDMSLGENIKTKRNELKLSQEYVAEQLGVSRQAVSKWETDQSQPKA 66 Query: 156 KPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 K ++ V L + + ++ + + ++ SK Sbjct: 67 KNLTELATVFHVGLSGLVEPQKYQAEQAAQENEWRENRNNSKM 109 >gi|260585081|ref|ZP_05852823.1| transcriptional regulator, Cro/CI family [Granulicatella elegans ATCC 700633] gi|260157277|gb|EEW92351.1| transcriptional regulator, Cro/CI family [Granulicatella elegans ATCC 700633] Length = 180 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 30/79 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ +K +R TQ+E+A + + ++ EN + S S+ + + Sbjct: 2 EIGSHLKALRVQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCAPKDF 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 ++ + + Sbjct: 62 FEDGPEEALTVYGPEDMTV 80 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ LK++R KG++Q E + + +S E + P + I +V Sbjct: 1 MEIGSHLKALRVQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCAPKD 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ R+ + TQ+ ++ + + E G C+ S+ + + Sbjct: 6 VGGRLRLYRQLRDMTQESLSEVIGVTKQHLGQIERGQCNPSLDFLSKAAAALNTQVANFF 65 Query: 92 DGEVIDRR 99 G D Sbjct: 66 LGNSHDPT 73 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RL+ R+ + M+Q +++G+ L E+G+ P + K Sbjct: 1 MVHNGVGGRLRLYRQLRDMTQESLSEVIGVTKQHLGQIERGQCNPSLDFLSKAAAALNTQ 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 VANFFLGN 68 >gi|254557574|ref|YP_003063991.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300767504|ref|ZP_07077415.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181654|ref|YP_003925782.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254046501|gb|ACT63294.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300494883|gb|EFK30040.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047145|gb|ADN99688.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 273 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RI +R A + ++A +S +N +E G + + +++S + Sbjct: 6 QQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYFDVSTN 65 Query: 89 WIYDGEVIDRRYEDVTN 105 ++ G + + N Sbjct: 66 YLLYGSLTEYVTAVFQN 82 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVT 165 ++D +G R+ +R G+S + +G+ ST++++E+GRT+ K+ Sbjct: 1 MQIDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYF 60 Query: 166 KKHLDWIYFG 175 +++ +G Sbjct: 61 DVSTNYLLYG 70 >gi|170016442|ref|YP_001727361.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803299|gb|ACA81917.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 122 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 19/131 (14%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++RK TQ+ +A + +ENG + + + + + D++ G Sbjct: 6 DRIKELRKQKQLTQQGLADKIEASRDTITKYENGRRIPKLAMISLIADVLDTTVDYL-QG 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + + D + +Q + + +T + EQ Sbjct: 65 KTDNALKTSHNGSNNGDEQPLTD-----------AQKQVAYFIDPS-ATQEDIEQ----- 107 Query: 154 EIKPARKIKQV 164 IK +I ++ Sbjct: 108 -IKKLVEIAKL 117 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +RK K ++Q + T++ YE GR IP++ I V +D++ Sbjct: 8 IKELRKQKQLTQQGLADKIEASRDTITKYENGRRIPKLAMISLIADVLDTTVDYL 62 >gi|9632458|ref|NP_049430.1| hypothetical protein DT1p41 [Streptococcus phage DT1] gi|4530178|gb|AAD21918.1| unknown [Streptococcus phage DT1] Length = 165 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ T+ E+A + + +E+G A L + +S ++ Sbjct: 2 NRLKELRELRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSIPYLLGY 61 Query: 94 EV 95 + Sbjct: 62 DT 63 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R+ + ++++E + +G+ T+ N+E G + A+K+ + + ++ Sbjct: 1 MNRLKELRELRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSIPYLLG 60 Query: 175 GD 176 D Sbjct: 61 YD 62 >gi|26991944|ref|NP_747369.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24987072|gb|AAN70833.1|AE016728_2 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] gi|313501243|gb|ADR62609.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 182 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R++ IRK +Q+E+A A S +++ E S SI + + +S Sbjct: 2 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEF 61 Query: 91 YDGEVIDRRYEDV 103 + E+ + + Sbjct: 62 FSVELEPQSPTQI 74 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL++IRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLSGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F + P+S Sbjct: 58 MVEFFSVELEPQS 70 >gi|163938382|ref|YP_001643266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229056228|ref|ZP_04195651.1| hypothetical protein bcere0026_3600 [Bacillus cereus AH603] gi|163860579|gb|ABY41638.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228721115|gb|EEL72650.1| hypothetical protein bcere0026_3600 [Bacillus cereus AH603] Length = 64 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I ++R ANN +Q +A N +N EN S+ A L + D ++ Sbjct: 3 NQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLFLY 62 Query: 94 E 94 + Sbjct: 63 K 63 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 1 MKNQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|325479131|gb|EGC82228.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 91 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +RK Q E+ ++L E G + S+ AL L +E+ + I++ Sbjct: 27 NNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSVLVALSLARVFEVKVEDIFNL 86 Query: 94 EVIDR 98 E I+ Sbjct: 87 EEINE 91 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 42/73 (57%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K++ D + L S+RK+KGM+Q E G+ +G+ T+S E+G P + A + +V Sbjct: 17 KRKEDLLRLVNNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSVLVALSLARVF 76 Query: 166 KKHLDWIYFGDEV 178 + ++ I+ +E+ Sbjct: 77 EVKVEDIFNLEEI 89 >gi|269122272|ref|YP_003310449.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268616150|gb|ACZ10518.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 180 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 34/91 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K +R+ TQ E+A + ++ E + S S+ + + Sbjct: 2 KIGEKLKSLRQEKLLTQNELADRCELSKGFISQLERDLTSPSLSTLEDILEVLGTNIRDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ V + +G +K I Sbjct: 62 FNETQQEKIVFSVEDFYEFQNEELGYEIKWI 92 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LKS+R++K ++Q E + +S E+ T P + I +V ++ Sbjct: 1 MKIGEKLKSLRQEKLLTQNELADRCELSKGFISQLERDLTSPSLSTLEDILEVLGTNIRD 60 Query: 172 IYFGDEVIVPKSI 184 + +E K + Sbjct: 61 FF--NETQQEKIV 71 >gi|209809535|ref|YP_002265073.1| putative DNA-binding protein [Aliivibrio salmonicida LFI1238] gi|208011097|emb|CAQ81517.1| putative DNA-binding protein [Aliivibrio salmonicida LFI1238] Length = 215 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+KDIR T +E + S ++ EN S + + L + +I I Sbjct: 35 DLGKRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLASGLDIDIPQI 94 Query: 91 YD 92 ++ Sbjct: 95 FE 96 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 35/80 (43%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E + E ++ + P +G RLK IR G++ E K G+ STLS E + P Sbjct: 16 EAKIVKIEKNNEEQPIAPLDLGKRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISP 75 Query: 154 EIKPARKIKQVTKKHLDWIY 173 + +K+ + I+ Sbjct: 76 TFQALQKLASGLDIDIPQIF 95 >gi|5852826|gb|AAD54225.1|AF143443_4 MesF [Leuconostoc mesenteroides] gi|30909074|gb|AAP37399.1| MesF [Leuconostoc mesenteroides subsp. mesenteroides] Length = 87 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +K RK N +Q ++ N + V+ +E+G I + + + ++ I Sbjct: 25 DIGPNLKKYRKLANISQFKLGQLLNVNQVTVSHYESGQRVPDIDSLIKISDILDVDIKDI 84 Query: 91 Y 91 Sbjct: 85 L 85 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK RK +SQ + G+LL + T+S+YE G+ +P+I KI + + I Sbjct: 29 NLKKYRKLANISQFKLGQLLNVNQVTVSHYESGQRVPDIDSLIKISDILDVDIKDIL 85 >gi|47568826|ref|ZP_00239520.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228983895|ref|ZP_04144089.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154395|ref|ZP_04282515.1| Transcriptional regulator [Bacillus cereus ATCC 4342] gi|229159774|ref|ZP_04287782.1| Transcriptional regulator [Bacillus cereus R309803] gi|229171478|ref|ZP_04299062.1| Transcriptional regulator [Bacillus cereus MM3] gi|47554502|gb|EAL12859.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228612016|gb|EEK69254.1| Transcriptional regulator [Bacillus cereus MM3] gi|228623711|gb|EEK80529.1| Transcriptional regulator [Bacillus cereus R309803] gi|228629219|gb|EEK85926.1| Transcriptional regulator [Bacillus cereus ATCC 4342] gi|228775874|gb|EEM24246.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324324735|gb|ADY19995.1| transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 66 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R + TQ+++A ++L E G + S+ L + + + + ++ Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 94 EVI 96 E Sbjct: 64 EEE 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R ++Q + + +G+ T+S E+G+ P + KI K L+ + Sbjct: 1 MAVSKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDL 60 Query: 173 YFGDEV 178 ++ +E Sbjct: 61 FWEEEE 66 >gi|325568792|ref|ZP_08145085.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157830|gb|EGC69986.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 82 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R K +R+ + KE+ + L+E G + L+ + Y +S D++ Sbjct: 15 RFKFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLLGQT 74 Query: 95 VIDRRY 100 RY Sbjct: 75 ERPERY 80 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 K +R+++G+S E + L + + YE G +P++ + +D++ Sbjct: 17 KFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLL 71 >gi|302531998|ref|ZP_07284340.1| predicted protein [Streptomyces sp. AA4] gi|302440893|gb|EFL12709.1| predicted protein [Streptomyces sp. AA4] Length = 181 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 18/123 (14%) Query: 44 NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 + ++A S+V+ +E G S R+A + I + Sbjct: 37 GLSILDLADLIGTTRSSVHKWEAGDVSPDPRHAKKAADVLGIPLREL------------- 83 Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 D L R +G++ + + G+ +TLS+ E G P A I Sbjct: 84 -----TDLDDEQIGLAERRALQGLTARDLSRKSGIDGATLSHIESGHRRPSEHQAAAISA 138 Query: 164 VTK 166 + Sbjct: 139 ALQ 141 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 126 GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 G+S ++ L+G S++ +E G P+ + A+K V L + D+ + + + Sbjct: 37 GLSILDLADLIGTTRSSVHKWEAGDVSPDPRHAKKAADVLGIPLRELTDLDDEQIGLAER 96 Query: 186 RA 187 RA Sbjct: 97 RA 98 >gi|294633421|ref|ZP_06711980.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] gi|292831202|gb|EFF89552.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] Length = 181 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +VG R++++R A + E+A + + ++ E+G + ++ L Sbjct: 6 EVGRRLRELRTARGLSLSELARRSGVGKGTLSELESGTRNPTLDTLYALTTALN 59 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R +G+S E + G+ TLS E G P + + + L + Sbjct: 9 RRLRELRTARGLSLSELARRSGVGKGTLSELESGTRNPTLDTLYALTTALNRPLSAVLAD 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|262282933|ref|ZP_06060700.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262261185|gb|EEY79884.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 96 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 VG IK +RK N+ TQ E A ++++ +ENG S + ++ +S Sbjct: 15 VGDNIKSLRKTNDLTQPEFARIVGISRNSLSRYENGTSPISTELIDTICQKFNVS 69 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 38/80 (47%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + K + +G +KS+RK ++Q EF +++G+ ++LS YE G + + I Sbjct: 3 YNGDIKSKERAMVGDNIKSLRKTNDLTQPEFARIVGISRNSLSRYENGTSPISTELIDTI 62 Query: 162 KQVTKKHLDWIYFGDEVIVP 181 Q I ++++ P Sbjct: 63 CQKFNVSYVAIVGEEKMLNP 82 >gi|229175843|ref|ZP_04303341.1| hypothetical protein bcere0006_49140 [Bacillus cereus MM3] gi|228607576|gb|EEK64900.1| hypothetical protein bcere0006_49140 [Bacillus cereus MM3] Length = 65 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K++ + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQHHITQVEMAKVMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQHHITQVEMAKVMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|262195991|ref|YP_003267200.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079338|gb|ACY15307.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 152 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 21/68 (30%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 + + R TQ ++A + E G S + L + +S D + D E Sbjct: 23 LTEARMERGWTQADVAEQLGVSLAYYGRIERGDHVPSFLMTVKLARLFALSLDGLLDPEG 82 Query: 96 IDRRYEDV 103 Sbjct: 83 WRVPATQP 90 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 33/85 (38%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 ++ + L + L R ++G +Q + + LG+ + E+G +P Sbjct: 2 SNAPDENERLRALFLQRLPPVLTEARMERGWTQADVAEQLGVSLAYYGRIERGDHVPSFL 61 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVP 181 K+ ++ LD + + VP Sbjct: 62 MTVKLARLFALSLDGLLDPEGWRVP 86 >gi|225573231|ref|ZP_03781986.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM 10507] gi|225039363|gb|EEG49609.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM 10507] Length = 217 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +G I+ IRK Q+E+A +++ E G+ + + N ++ + Sbjct: 3 YQLLGENIQIIRKHRKMKQQELADAIGINLQSLSKIERGVNYPTFETLEKIINVLGVTPN 62 Query: 89 WIYDGE 94 + GE Sbjct: 63 ELLTGE 68 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++ IRK + M Q E +G+ +LS E+G P + KI V Sbjct: 1 MNYQLLGENIQIIRKHRKMKQQELADAIGINLQSLSKIERGVNYPTFETLEKIINVLGVT 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 PNELLTGE 68 >gi|124010434|ref|ZP_01695075.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123983471|gb|EAY23951.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 504 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 48/154 (31%), Gaps = 14/154 (9%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + G ++K +R + E++ S +N E G L Sbjct: 1 MKIKEENIRLIFGVKVKQLRTEKKLSLAEVSKATGISISYLNEIEKGKKYPKPNKIATLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 E+ +DW+ ++ ++ + + D + G+ ++ Sbjct: 61 QTLEVDYDWLISLQL-SKKLAPIAELIQSDMLTSLPL-----EIFGIELSTLIDMITNTP 114 Query: 141 STLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 + +S + I +I + ++ YF Sbjct: 115 AKVSAF--------ISTLIEIARNYDMSVERFYF 140 >gi|116694764|ref|YP_728975.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113529263|emb|CAJ95610.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 198 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 28/70 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG ++ +R+ + E++ A +S ++ E + + ++ L N ++ Sbjct: 15 PAVGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVNLTD 74 Query: 90 IYDGEVIDRR 99 G +R Sbjct: 75 FLAGGAAERP 84 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G L+++R+ + +S E + G+ S LS E+ P + ++ +L Sbjct: 16 AVGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVNLTDF 75 Query: 173 YFG 175 G Sbjct: 76 LAG 78 >gi|317131063|ref|YP_004090377.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469042|gb|ADU25646.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 72 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ + +Q MA + + + +E G + L + ++ S D++ Sbjct: 3 KRIRDLREDKSLSQTRMAEILHCSQRVYSNYERGEVDIPTGILIRLADFHQTSTDYLLGR 62 Query: 94 EVIDRRYED 102 + + Y Sbjct: 63 TSVSKPYPK 71 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+DK +SQ ++L SNYE+G ++ + D++ Sbjct: 1 MYKRIRDLREDKSLSQTRMAEILHCSQRVYSNYERGEVDIPTGILIRLADFHQTSTDYLL 60 Query: 174 FGDEVIVP 181 V P Sbjct: 61 GRTSVSKP 68 >gi|302869253|ref|YP_003837890.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504272|ref|YP_004083159.1| transcriptional regulator, xre family [Micromonospora sp. L5] gi|302572112|gb|ADL48314.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410891|gb|ADU09008.1| transcriptional regulator, XRE family [Micromonospora sp. L5] Length = 81 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + V RI +R +++++A V E G S+ AL + +E+ + Sbjct: 3 ETVHNRIAVLRAERGISRRQLADALGVHYQTVGYLERGEFRPSLHLALRIAAYFEVPVEV 62 Query: 90 IYDGEVIDRRYED 102 ++ E R + Sbjct: 63 VFSIEPFPRIGDP 75 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ +R ++G+S+ + LG+ T+ E+G P + A +I + ++ ++ Sbjct: 6 HNRIAVLRAERGISRRQLADALGVHYQTVGYLERGEFRPSLHLALRIAAYFEVPVEVVFS 65 Query: 175 GD 176 + Sbjct: 66 IE 67 >gi|260220717|emb|CBA28555.1| hypothetical protein Csp_A07760 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 210 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG++++D RKA + E++ A +S ++ E + ++ L IS Sbjct: 27 PAVGSKLQDARKAQQLSLDELSKRAGVSKSMLSEVERNQANPTVGVLWRLATALGISLTD 86 Query: 90 IYDGEVIDRRYEDVT 104 + D+ V Sbjct: 87 LLSNTTADKATPTVE 101 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G++L+ RK + +S E K G+ S LS E+ + P + ++ L + Sbjct: 28 AVGSKLQDARKAQQLSLDELSKRAGVSKSMLSEVERNQANPTVGVLWRLATALGISLTDL 87 Query: 173 Y 173 Sbjct: 88 L 88 >gi|259047659|ref|ZP_05738060.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035850|gb|EEW37105.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 138 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDR 98 +RK + +Q+E+A + A +E+G I L + Y ++ D + ++ Sbjct: 2 LRKLKDFSQEEIAEKIDISRQAYGKWESGETIPDIEKCAILADVYGVTIDSLIREHRVEN 61 Query: 99 RYEDVTN 105 T Sbjct: 62 TPLAPTP 68 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +RK K SQ E + + + +E G TIP+I+ + V +D + Sbjct: 2 LRKLKDFSQEEIAEKIDISRQAYGKWESGETIPDIEKCAILADVYGVTIDSLI 54 >gi|257875054|ref|ZP_05654707.1| predicted protein [Enterococcus casseliflavus EC20] gi|257809220|gb|EEV38040.1| predicted protein [Enterococcus casseliflavus EC20] Length = 135 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K+ R +Q+E+A ++++ +E G L L Y S D + Sbjct: 3 IGEALKNHRVTQQMSQEEVATKILVTRTSISNWETGKTVPDSLNLLKLSTLYGCSVDELL 62 Query: 92 DGE 94 E Sbjct: 63 KKE 65 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG LK+ R + MSQ E + + +++SN+E G+T+P+ K+ + +D Sbjct: 1 MTIGEALKNHRVTQQMSQEEVATKILVTRTSISNWETGKTVPDSLNLLKLSTLYGCSVDE 60 Query: 172 IYFGDEVIVPKSIK 185 + + + K+ + Sbjct: 61 LLKKERAGMKKNFR 74 >gi|322418240|ref|YP_004197463.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320124627|gb|ADW12187.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 206 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 10/97 (10%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 14 LQEYTLIITPEIRQYWKD--VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 + + + +I+Q ++ +G +++ +R+ T + +A + ++ EN + Sbjct: 1 MHKRGCHVQEKIKQEIREMKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTP 60 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 I L + ++ + ++ +++ ++ Sbjct: 61 PIATLLKIAKGLKVGIHYFFEEAGDRQKFVLTRGEQP 97 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + +G +++ +R+++ ++ + G+ LS E + P I KI + Sbjct: 13 KQEIREMKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLKIAKGL 72 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 K + + + +E + +G Q S++ Sbjct: 73 KVGIHYFF--EEAGDRQKFVLTRGEQPPLGSQR 103 >gi|222087821|ref|YP_002546359.1| hypothetical protein Arad_4804 [Agrobacterium radiobacter K84] gi|221725269|gb|ACM28425.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 72 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 26/68 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +R+ + TQ+E+ + + ++ E G + ++ L +S Sbjct: 4 RKLVGRNFARLRREKDLTQEEVEARSGFSQQYLSGLERGRRNPTVITLYELAQALGVSHV 63 Query: 89 WIYDGEVI 96 + + Sbjct: 64 ELVKPDND 71 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R++K ++Q E G LS E+GR P + ++ Q + D I Sbjct: 13 RLRREKDLTQEEVEARSGFSQQYLSGLERGRRNPTVITLYELAQALGVSHVELVKPDNDI 72 >gi|168186759|ref|ZP_02621394.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum C str. Eklund] gi|169295309|gb|EDS77442.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum C str. Eklund] Length = 432 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK T K++A G ++L E+G + S+ YL IS +++ Sbjct: 6 LGEKIKRRRKELGMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLAESLNISIEYLM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEET 69 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K RK+ GM+ + + +S E G++ P + + + Sbjct: 1 MEILSLGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAESLNIS 59 Query: 169 LDWIYFGDEVIVPK 182 ++++ +E K Sbjct: 60 IEYLMESEETQAEK 73 >gi|153941310|ref|YP_001391621.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152937206|gb|ABS42704.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295319653|gb|ADG00031.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] Length = 145 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 14/130 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R+ + T K + + + +EN +S L L Sbjct: 28 IGERIRKLRELKDMTTKGLGEKIGITSAEIINYENNNAYSSAHIILKLYALLG------- 80 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + + +LK R ++Q E L + ++E+ + Sbjct: 81 -------QNMTCDDYSNFITSKYWEKLKVWRVTNNLTQKEAAIFLQIAERAYYSWEKCNS 133 Query: 152 IPEIKPARKI 161 KI Sbjct: 134 YITRHTFNKI 143 Score = 36.5 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 26/54 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 R++ +R+ K M+ G+ +G+ ++ + NYE K+ + +++ Sbjct: 30 ERIRKLRELKDMTTKGLGEKIGITSAEIINYENNNAYSSAHIILKLYALLGQNM 83 >gi|154250004|ref|YP_001410829.1| cupin 2 domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153940|gb|ABS61172.1| Cupin 2 conserved barrel domain protein [Fervidobacterium nodosum Rt17-B1] Length = 175 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 4/118 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G++IK +R A TQ+E+A + S ++ E+ S S+ + Sbjct: 2 KIGSKIKRLRLARGYTQEELADRCDLSRSFISQLESDKVSPSVETLERVLRVLGTDLKHF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF-GKLLGMPNSTLSNYE 147 + E +R+ Y + +K G+ E K++ + + + E Sbjct: 62 FSDEQKKI---IFKKNERVPMYELPKGVKIDILMDGIEDKEIDAKIVELEPGSQTEQE 116 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+++K +R +G +Q E + S +S E + P ++ ++ +V L Sbjct: 1 MKIGSKIKRLRLARGYTQEELADRCDLSRSFISQLESDKVSPSVETLERVLRVLGTDLKH 60 Query: 172 IYFGDE 177 + ++ Sbjct: 61 FFSDEQ 66 >gi|28377157|ref|NP_784049.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300766897|ref|ZP_07076810.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28269988|emb|CAD62888.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300495435|gb|EFK30590.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R +QKE+A ++L E G + S++ L L + + D ++ Sbjct: 5 NHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHALNQTLDTVFWV 64 Query: 94 EV 95 E Sbjct: 65 EP 66 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K R G SQ E G+ TLS E+G P +K + + LD Sbjct: 1 MLTANHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHALNQTLDT 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 VFWVE 65 >gi|331268528|ref|YP_004395020.1| DNA-binding protein [Clostridium botulinum BKT015925] gi|329125078|gb|AEB75023.1| DNA-binding protein, putative [Clostridium botulinum BKT015925] Length = 185 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 29/75 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K +R TQ ++A + ++ E + S SI + + + Sbjct: 8 KIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKDF 67 Query: 91 YDGEVIDRRYEDVTN 105 ++ E ++ + Sbjct: 68 FNDEEEEKIVFSKED 82 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + IG +LK +R +KG++Q++ + +S E+ T P I I + Sbjct: 1 MKKGEVMKIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECL 60 Query: 166 KKHLDWIYFGDE----VIVPKSIKRAKGNQSSKK 195 +L + +E V + I ++ ++ + K Sbjct: 61 GTNLKDFFNDEEEEKIVFSKEDIFESEDSELNYK 94 >gi|326790508|ref|YP_004308329.1| hypothetical protein Clole_1405 [Clostridium lentocellum DSM 5427] gi|326541272|gb|ADZ83131.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 159 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 9/125 (7%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWIY 91 G ++K +RK +QKE+A + S + E+G + S+ + + + Sbjct: 3 GEKLKQLRKEKKISQKELAELSGLSISYIQQIESGKKNNPSLEALTAIAKVLDTPMYHLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQGR 150 D + + + E L+ I D+ E + + G + L E Sbjct: 63 DESMKEYKDE-------FYFKQCIDWLRPILIDEPEYASEEAQRIYGYTLTILETLEHAY 115 Query: 151 TIPEI 155 P I Sbjct: 116 NNPNI 120 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLDW 171 G +LK +RK+K +SQ E +L G+ S + E + P ++ I +V + Sbjct: 1 MYGEKLKQLRKEKKISQKELAELSGLSISYIQQIESGKKNNPSLEALTAIAKVLDTPMYH 60 Query: 172 IYFGDEVIVP 181 + DE + Sbjct: 61 LL--DESMKE 68 >gi|324991594|gb|EGC23527.1| transcriptional regulator [Streptococcus sanguinis SK353] Length = 158 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +RK N TQ E A ++++ +ENG+ S + ++ +S+ I Sbjct: 2 IGDNIKYLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVSYVDIV 61 Query: 92 DGEV 95 E Sbjct: 62 GEEK 65 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +K +RK ++Q EF +++G+ ++LS YE G + + I Q I Sbjct: 1 MIGDNIKYLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVSYVDI 60 Query: 173 YFGDEVIVP 181 ++++ P Sbjct: 61 VGEEKMLNP 69 >gi|315281167|ref|ZP_07869853.1| transcriptional regulator [Listeria marthii FSL S4-120] gi|313615189|gb|EFR88648.1| transcriptional regulator [Listeria marthii FSL S4-120] Length = 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 31/65 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V ++K++R+ + Q E+A ++ E G + S+ +L + + +S + I+ Sbjct: 3 VTNKLKNLREERDIAQNELAKALEVSRQTIHAIEKGKYNPSLELSLKIAKYFHLSVEEIF 62 Query: 92 DGEVI 96 + E Sbjct: 63 NLEGE 67 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 34/62 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +LK++R+++ ++Q E K L + T+ E+G+ P ++ + KI + ++ Sbjct: 1 MIVTNKLKNLREERDIAQNELAKALEVSRQTIHAIEKGKYNPSLELSLKIAKYFHLSVEE 60 Query: 172 IY 173 I+ Sbjct: 61 IF 62 >gi|258647029|ref|ZP_05734498.1| DNA-binding protein [Dialister invisus DSM 15470] gi|260404470|gb|EEW98017.1| DNA-binding protein [Dialister invisus DSM 15470] Length = 249 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK + + +++A + S ++ +E+G I + + + + + + Sbjct: 21 LGKRIRYYRKQKHMSLRQLADIICKSVSTLSKYESGQIVLDITTLYDIAHAFHLPVEQLL 80 Query: 92 DGEVIDRRYEDVTNKKR 108 E I + + Sbjct: 81 YHEEIFMSPTEKDSYIP 97 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK K MS + ++ STLS YE G+ + +I I ++ + + Sbjct: 23 KRIRYYRKQKHMSLRQLADIICKSVSTLSKYESGQIVLDITTLYDIAHAFHLPVEQLLYH 82 Query: 176 DEVIVPKSIKRA 187 +E+ + + K + Sbjct: 83 EEIFMSPTEKDS 94 >gi|167851686|ref|ZP_02477194.1| possible transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] gi|257140690|ref|ZP_05588952.1| XRE family transcriptional regulator [Burkholderia thailandensis E264] Length = 109 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R K+Q+ +A A+ + ++ E G+ + S+ + I+ ++ Sbjct: 20 LGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGIANPSVETLANICYSLNITLAELF 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +R A +K R Sbjct: 80 ---APLDGVSLKPTGERRANAATPPEIKRSR 107 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K R + SQ + + +S+ E+G P ++ I L Sbjct: 18 IALGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGIANPSVETLANICYSLNITLAE 77 Query: 172 IY 173 ++ Sbjct: 78 LF 79 >gi|126735190|ref|ZP_01750936.1| DNA-binding protein, putative [Roseobacter sp. CCS2] gi|126715745|gb|EBA12610.1| DNA-binding protein, putative [Roseobacter sp. CCS2] Length = 128 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 4/106 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R+A QK +A + + +E + + +S W+ Sbjct: 15 FGDRLAGAREAAGLDQKGLAEKLGVKPAVIQAWEEDLKEPRANRLQMVSGIVGVSMSWLL 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 GE D D + A ++++R + G+ LG Sbjct: 75 TGEGDGPEAPDDDGPMSNDLVDLLAEMRALRG----QIAQSGEKLG 116 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L R+ G+ Q + LG+ + + +E+ P + + + + W+ G+ Sbjct: 19 LAGAREAAGLDQKGLAEKLGVKPAVIQAWEEDLKEPRANRLQMVSGIVGVSMSWLLTGE 77 >gi|154244507|ref|YP_001415465.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158592|gb|ABS65808.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 117 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R+ +Q+++ A S++ FE G S L N EI+ D++ Sbjct: 13 ERLKSARELRGYSQEQLGARAGMPASSIAHFETGR-KPSFDSLRRLANALEITTDYLL 69 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLKS R+ +G SQ + G GMP S+++++E GR P R++ + D++ Sbjct: 11 FRERLKSARELRGYSQEQLGARAGMPASSIAHFETGR-KPSFDSLRRLANALEITTDYLL 69 >gi|147668752|ref|YP_001213570.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|147668945|ref|YP_001213763.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432070|ref|YP_003461943.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|146269700|gb|ABQ16692.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|146269893|gb|ABQ16885.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288945790|gb|ADC73487.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 71 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G RI+ +RK +Q+E+A A + + E G + S++ + E Sbjct: 3 KKTIEQRFGERIRVLRKKAEISQEELAFRAGVHRTYLGGIERGERNPSLKNIEAIAKALE 62 Query: 85 ISFDWIY 91 + ++ Sbjct: 63 VPISDLF 69 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R++ +RK +SQ E G+ + L E+G P +K I + + + ++ Sbjct: 10 FGERIRVLRKKAEISQEELAFRAGVHRTYLGGIERGERNPSLKNIEAIAKALEVPISDLF 69 >gi|47564475|ref|ZP_00235520.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558627|gb|EAL16950.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK+ R N TQ+++A ++ E G + S++ A + + D I+ E Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAYDIAKALHSTIDGIFIFE 65 Query: 95 VI 96 Sbjct: 66 DE 67 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+S+ E+G+ P ++ A I + +D Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAYDIAKALHSTIDG 60 Query: 172 IYFGDEV 178 I+ ++ Sbjct: 61 IFIFEDE 67 >gi|330961956|gb|EGH62216.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 180 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K +RK T + +A +S ++ E G+ + SI AL L + +S + ++ Sbjct: 4 RLKILRKRLGMTLEVLAEKTGITKSYLSKVERGLNTPSIAAALKLAAAFNVSVEELFTEG 63 Query: 95 VIDRRYEDVTNKKR 108 + + + Sbjct: 64 TPSQASYSLVRSNQ 77 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF-GD 176 LK +RK GM+ + G+ S LS E+G P I A K+ ++ ++ G Sbjct: 5 LKILRKRLGMTLEVLAEKTGITKSYLSKVERGLNTPSIAAALKLAAAFNVSVEELFTEGT 64 Query: 177 EVIVPKSIKRAKGNQS 192 S+ R+ QS Sbjct: 65 PSQASYSLVRSNQRQS 80 >gi|315925644|ref|ZP_07921854.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315621185|gb|EFV01156.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 235 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +G I+ RK N T ++ + +SA++ +ENG S I L Sbjct: 1 MSEITVGIGHNIRIYRKKNGLTLDALSDLVFKSKSALSKYENGDISIDIETLYELAEALH 60 Query: 85 ISFDWIYD 92 I + + Sbjct: 61 IHVEQLLY 68 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ RK G++ L+ S LS YE G +I+ ++ + H++ + + Sbjct: 10 HNIRIYRKKNGLTLDALSDLVFKSKSALSKYENGDISIDIETLYELAEALHIHVEQLLY 68 >gi|294630087|ref|ZP_06708647.1| PbsX family transcriptional regulator [Streptomyces sp. e14] gi|292833420|gb|EFF91769.1| PbsX family transcriptional regulator [Streptomyces sp. e14] Length = 230 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 18 NLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 77 Query: 91 Y 91 Y Sbjct: 78 Y 78 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R++ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 21 EYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 78 >gi|293395281|ref|ZP_06639566.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422238|gb|EFE95482.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 185 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ IR+ +Q+ +A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVI-VPKSIKRAK 188 + E + PK + A Sbjct: 66 FFAEPERLDQPKVVIDAD 83 >gi|269792208|ref|YP_003317112.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099843|gb|ACZ18830.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 117 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R+A TQ+ +A N + E+ S+ L +++ + Sbjct: 3 LGMRVKVLRRAKGLTQQGLADTVNVSRVYIQSIESNRRRPSMDLLERLAEALDVTVADLV 62 Query: 92 DGEVIDRRYEDVTN 105 D + + Sbjct: 63 KDSPGDGKRMQLEE 76 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 27/64 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G R+K +R+ KG++Q + + + + E R P + ++ + + Sbjct: 1 MSLGMRVKVLRRAKGLTQQGLADTVNVSRVYIQSIESNRRRPSMDLLERLAEALDVTVAD 60 Query: 172 IYFG 175 + Sbjct: 61 LVKD 64 >gi|229027921|ref|ZP_04184076.1| Transcriptional regulator Xre [Bacillus cereus AH1271] gi|229170925|ref|ZP_04298528.1| Transcriptional regulator Xre [Bacillus cereus MM3] gi|228612591|gb|EEK69810.1| Transcriptional regulator Xre [Bacillus cereus MM3] gi|228733435|gb|EEL84262.1| Transcriptional regulator Xre [Bacillus cereus AH1271] Length = 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S S + + + ++S + + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSVEELMP 66 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ RK KG +Q F K LG+ S L E+G P ++ + K ++ + Sbjct: 8 RRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSVEELM 65 >gi|225406864|ref|ZP_03761053.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme DSM 15981] gi|225042620|gb|EEG52866.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme DSM 15981] Length = 63 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I+D RK +Q+E+A VN EN ++ A +L E + D ++ Sbjct: 5 IRDKRKQQGLSQEELAKRCGVSRQTVNAIENDKYDPTLALAFHLARELDTRVDELFT 61 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ RK +G+SQ E K G+ T++ E + P + A + + +D ++ Sbjct: 1 MKNSIRDKRKQQGLSQEELAKRCGVSRQTVNAIENDKYDPTLALAFHLARELDTRVDELF 60 Query: 174 F 174 Sbjct: 61 T 61 >gi|239617046|ref|YP_002940368.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1] gi|239505877|gb|ACR79364.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1] Length = 351 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 32/77 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+RIK R NN + ++++ A++ +E S + + L + ++ + Sbjct: 3 IGSRIKQARIRNNMSLRKLSEKVGVSAMAISKYERDEDVPSSKVLIRLSKALNVKVEYFF 62 Query: 92 DGEVIDRRYEDVTNKKR 108 ++ + ++ Sbjct: 63 RPDLFPIESLSQVSYRK 79 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG+R+K R MS + + +G+ +S YE+ +P K ++ + +++ Sbjct: 1 MSIGSRIKQARIRNNMSLRKLSEKVGVSAMAISKYERDEDVPSSKVLIRLSKALNVKVEY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + D + + + K SK KK N Sbjct: 61 FFRPDLFPIESLSQVS----YRKHSKLGKKILN 89 >gi|251794538|ref|YP_003009269.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542164|gb|ACS99182.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 74 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I+ +R N TQ+++A + E G S S+ A + + + + + I Sbjct: 6 VGNHIRKLRFNLNEMTQQQLADKVGVTRQTIVALEKGNYSPSLELAFRISHTFGLPIEEI 65 Query: 91 YD 92 + Sbjct: 66 FF 67 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 109 LDPYAIGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + +G ++ +R + M+Q + +G+ T+ E+G P ++ A +I Sbjct: 1 MVKNLVGNHIRKLRFNLNEMTQQQLADKVGVTRQTIVALEKGNYSPSLELAFRISHTFGL 60 Query: 168 HLDWIYF-GDEV 178 ++ I+F GD+ Sbjct: 61 PIEEIFFYGDDT 72 >gi|116331586|ref|YP_801304.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125275|gb|ABJ76546.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 204 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 25/76 (32%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + + V +K IR + ++A + ++ E G +I + N Sbjct: 14 SSSSEHITEVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIAN 73 Query: 82 EYEISFDWIYDGEVID 97 + F + + + Sbjct: 74 GLNVPFSELLKEKGAE 89 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 2/107 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + + + ++ + LK IR KG S + G+ + LS EQG+ Sbjct: 1 MNPTMEEIETDKESSSSEHITEVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGK 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIY--FGDEVIVPKSIKRAKGNQSSKK 195 ++P I KI + G E ++ + K SS K Sbjct: 61 SVPTISVLWKIANGLNVPFSELLKEKGAEGVIVMKAENTKVLFSSSK 107 >gi|94967298|ref|YP_589346.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549348|gb|ABF39272.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 118 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 31/91 (34%), Gaps = 1/91 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I++ R +Q ++ L ++ ENG S+ + + +++ Sbjct: 2 NIGETIRNFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTIPSLDTLAKIASAMDVALATF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + D + + +++ Sbjct: 62 FSDAPADNGTKSSPQVSD-EVLRFLNQIRRY 91 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ R KGMSQ + K G+ LS E G TIP + KI L Sbjct: 1 MNIGETIRNFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTIPSLDTLAKIASAMDVALAT 60 Query: 172 IYFG 175 + Sbjct: 61 FFSD 64 >gi|150388588|ref|YP_001318637.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948450|gb|ABR46978.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 122 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +I+ R + T +E+A + S + L E G SI L ++ D+ Sbjct: 6 KLIGNKIRKERILLDLTLEELAEILDLSPSYMGLIERGQRGVSIETLYKLSTTLNVTTDY 65 Query: 90 IY 91 + Sbjct: 66 LL 67 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D IG +++ R ++ E ++L + S + E+G+ I+ K+ Sbjct: 1 MSIDLKLIGNKIRKERILLDLTLEELAEILDLSPSYMGLIERGQRGVSIETLYKLSTTLN 60 Query: 167 KHLDWIY 173 D++ Sbjct: 61 VTTDYLL 67 >gi|331270812|ref|YP_004397249.1| hypothetical protein CbC4_5052 [Clostridium botulinum BKT015925] gi|329127530|gb|AEB77473.1| hypothetical protein CbC4_5052 [Clostridium botulinum BKT015925] Length = 69 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R+K R + +Q + + L + + + E+ + P ++ A KI +V ++ + Sbjct: 1 MIQNRIKIFRTEHDWTQADLAEKLHISRQAVISIEKYKYTPSLELAFKIAEVFNVSINEV 60 Query: 173 YFGDE 177 + E Sbjct: 61 FQHKE 65 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK R ++ TQ ++A + AV E + S+ A + + +S + ++ Sbjct: 2 IQNRIKIFRTEHDWTQADLAEKLHISRQAVISIEKYKYTPSLELAFKIAEVFNVSINEVF 61 Query: 92 DGEV 95 + Sbjct: 62 QHKE 65 >gi|322411632|gb|EFY02540.1| DNA-binding protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 74 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+D+R+ ++ TQK +A + + E G + + + L Y +S D++ Sbjct: 3 QRIRDLREDHDFTQKFVANLLSFSHANYAKIERGEVALTANVLVQLSKLYNVSADYLL 60 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D +Q LL ++ + E+G ++ ++ D++ Sbjct: 1 MYQRIRDLREDHDFTQKFVANLLSFSHANYAKIERGEVALTANVLVQLSKLYNVSADYLL 60 >gi|289550066|ref|YP_003470970.1| hypothetical protein SLGD_00695 [Staphylococcus lugdunensis HKU09-01] gi|315659305|ref|ZP_07912169.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289179598|gb|ADC86843.1| hypothetical protein SLGD_00695 [Staphylococcus lugdunensis HKU09-01] gi|315495730|gb|EFU84061.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 71 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R + +Q E+A +N+ ENG + S++ + + + D ++ Sbjct: 9 NKVKVYRGYSKISQLELARAVGVSRQTINMIENGKYNPSLKLCVNIAKTLGTTLDTLF 66 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K R +SQ+E + +G+ T++ E G+ P +K I + LD +++ Sbjct: 9 NKVKVYRGYSKISQLELARAVGVSRQTINMIENGKYNPSLKLCVNIAKTLGTTLDTLFWE 68 Query: 176 DEV 178 ++ Sbjct: 69 NDT 71 >gi|262283491|ref|ZP_06061257.1| transcriptional regulator, PlcR [Streptococcus sp. 2_1_36FAA] gi|262260982|gb|EEY79682.1| transcriptional regulator, PlcR [Streptococcus sp. 2_1_36FAA] Length = 288 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 14/152 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+K RK +QKE+A G + ++ ENG + L ++S D+ + Sbjct: 5 LASRLKQRRKELKLSQKELADGI-CKQGQISRLENGEYTPGSDLLHELAKRLKVSMDYFF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 D E R ++ + K L I ++ + + ++E K + S E + Sbjct: 64 DEENNSSRNSELLDFKNLSKKFIHY--RNYESLRYIYELENAKKHQLSLSGKMYMEWIHS 121 Query: 152 IPEIKPARK-----------IKQVTKKHLDWI 172 + + K + Q K ++++ Sbjct: 122 LIQFYYYEKKDKAIDQLEETLSQFKKIDINYL 153 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RLK RK+ +SQ E + +S E G P ++ + K +D+ +F Sbjct: 7 SRLKQRRKELKLSQKELADGI-CKQGQISRLENGEYTPGSDLLHELAKRLKVSMDY-FFD 64 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 +E ++ + SKK Sbjct: 65 EENNSSRNSELLDFKNLSKK 84 >gi|228943045|ref|ZP_04105546.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955927|ref|ZP_04117864.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228968662|ref|ZP_04129641.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228976622|ref|ZP_04137065.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783091|gb|EEM31227.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791025|gb|EEM38647.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228803754|gb|EEM50436.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816630|gb|EEM62754.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 133 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 31/78 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++++R + + SA++ +E G + + +++S D++ Sbjct: 9 FGRNLRNLRNLQGLSLNALGKELGVTGSAISSWELGNKEPNFDMLKKVSGFFQVSTDYML 68 Query: 92 DGEVIDRRYEDVTNKKRL 109 + +V D + +L Sbjct: 69 NYQVFDDEAQRKEVVSQL 86 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 3/103 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L+ G L+++R +G+S GK LG+ S +S++E G P +K+ Sbjct: 1 MIGLEDNIFGRNLRNLRNLQGLSLNALGKELGVTGSAISSWELGNKEPNFDMLKKVSGFF 60 Query: 166 KKHLDWIYF---GDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + D++ D+ K + N+ ++ K S P Sbjct: 61 QVSTDYMLNYQVFDDEAQRKEVVSQLANEIYERYKNIPDSKKP 103 >gi|153955922|ref|YP_001396687.1| hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555] gi|219856264|ref|YP_002473386.1| hypothetical protein CKR_2921 [Clostridium kluyveri NBRC 12016] gi|146348780|gb|EDK35316.1| Hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555] gi|219569988|dbj|BAH07972.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 80 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 28/78 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT+I++ RK+ T +A + ++ EN + S+ + + + Sbjct: 2 LGTKIREYRKSLGMTATSLAEKVGVELATISKIENNKANPSMPTLYKIAEALNTTPSELI 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 I + K + Sbjct: 62 KDTEIKSFNINSEGTKEV 79 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ RK GM+ + +G+ +T+S E + P + KI + + E Sbjct: 6 IREYRKSLGMTATSLAEKVGVELATISKIENNKANPSMPTLYKIAEALNTTPSELIKDTE 65 Query: 178 V 178 + Sbjct: 66 I 66 >gi|307704468|ref|ZP_07641378.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307706023|ref|ZP_07642846.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|322376999|ref|ZP_08051492.1| putative transcriptional repressor [Streptococcus sp. M334] gi|307620442|gb|EFN99555.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307621988|gb|EFO01015.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|321282806|gb|EFX59813.1| putative transcriptional repressor [Streptococcus sp. M334] Length = 69 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R + ++Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MAKNLKLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 95 VI 96 Sbjct: 66 ED 67 >gi|289449377|ref|YP_003475735.1| Xre family toxin-antitoxin system antitoxin protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183924|gb|ADC90349.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 128 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +++++R+ N+ TQ E+A A+ +EN + + N + ++ ++ Sbjct: 3 FGEKLRELRRLNHITQAELAEELKISLRALVYYENNHRFPPRDTLVAIGNFFHVNVSYLV 62 Query: 92 DG 93 D Sbjct: 63 DD 64 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +L+ +R+ ++Q E + L + L YE P I ++ + Sbjct: 1 MTFGEKLRELRRLNHITQAELAEELKISLRALVYYENNHRFPPRDTLVAIGNFFHVNVSY 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|225025876|ref|ZP_03715068.1| hypothetical protein EUBHAL_00104 [Eubacterium hallii DSM 3353] gi|224956798|gb|EEG38007.1| hypothetical protein EUBHAL_00104 [Eubacterium hallii DSM 3353] Length = 64 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R A + +Q E+A N + E G + +I+ + + +E + D ++ Sbjct: 5 RLKAARAALDMSQAELAKRVNVSRQTIVAIEKGDYNPTIKLCIAICHELGKTLDELF 61 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+ R MSQ E K + + T+ E+G P IK I K LD +++ Sbjct: 6 LKAARAALDMSQAELAKRVNVSRQTIVAIEKGDYNPTIKLCIAICHELGKTLDELFWE 63 >gi|169829011|ref|YP_001699169.1| hypothetical protein Bsph_3551 [Lysinibacillus sphaericus C3-41] gi|168993499|gb|ACA41039.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 68 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 26/53 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 RI+++RK+ TQ++++ ++ E+G + S+ A + + + Sbjct: 3 NRIRELRKSRKITQEDLSKLVGVSRQSIIAIESGKFNPSLELAYNISKAFNCT 55 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 28/55 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + R++ +RK + ++Q + KL+G+ ++ E G+ P ++ A I + Sbjct: 1 MKNRIRELRKSRKITQEDLSKLVGVSRQSIIAIESGKFNPSLELAYNISKAFNCT 55 >gi|295105803|emb|CBL03346.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+++IRKA Q+++A ++ E G + SI A + +++S + ++ Sbjct: 3 NRLEEIRKARGIKQEDLATELGVSRQTISSLEKGRYNPSILLAFKIARHFDLSIEDVF 60 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK +G+ Q + LG+ T+S+ E+GR P I A KI + ++ ++ Sbjct: 1 MENRLEEIRKARGIKQEDLATELGVSRQTISSLEKGRYNPSILLAFKIARHFDLSIEDVF 60 Query: 174 FGDEV 178 E Sbjct: 61 IYREE 65 >gi|293980676|ref|YP_003543434.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677693|dbj|BAI99208.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 77 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 25/68 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + VG ++ R +Q E++ + S ++ ENG + ++ + Sbjct: 9 VESFAMLVGRNCRERRVQLEMSQTELSERSGVTASYLSRIENGRGNPTLELLDSIAGALG 68 Query: 85 ISFDWIYD 92 ++ Sbjct: 69 CHVVDLFR 76 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R MSQ E + G+ S LS E GR P ++ I H+ ++ Sbjct: 21 RERRVQLEMSQTELSERSGVTASYLSRIENGRGNPTLELLDSIAGALGCHVVDLF 75 >gi|291166792|gb|EFE28838.1| transcriptional regulator, Cro/CI family [Filifactor alocis ATCC 35896] Length = 172 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 36/91 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R N TQ+E+A+ + + ++ E + S SI + + Sbjct: 2 DIGEKIKRLRILNQLTQEELALRCDLTKGFISKVERNLTSPSISTLMDILEVLGTDLKSF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +D + D+ + + + + Sbjct: 62 FDDAIDDKVVYGKDDIYTSYNEHLKTTIHWL 92 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R ++Q E + +S E+ T P I I +V L Sbjct: 1 MDIGEKIKRLRILNQLTQEELALRCDLTKGFISKVERNLTSPSISTLMDILEVLGTDLKS 60 Query: 172 IYFGDEVIVPKSI 184 + D+ I K + Sbjct: 61 FF--DDAIDDKVV 71 >gi|258515640|ref|YP_003191862.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779345|gb|ACV63239.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 127 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Query: 30 KDV-GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++ R+ + K N +++ +A N A++ F +G S + L + + +S D Sbjct: 4 KNIFAKRLSLLIKENKASKQAVANAINISRPAISQFASGENLPSAEKLVALADFFGVSID 63 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAI 114 ++ G D R + + D +A Sbjct: 64 YLV-GRSDDPRIPNALSNTICDFFAD 88 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 1/75 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL + K+ S+ + + +S + G +P + + +D++ Sbjct: 7 FAKRLSLLIKENKASKQAVANAINISRPAISQFASGENLPSAEKLVALADFFGVSIDYLV 66 Query: 174 FG-DEVIVPKSIKRA 187 D+ +P ++ Sbjct: 67 GRSDDPRIPNALSNT 81 >gi|170016278|ref|YP_001723000.1| XRE family DNA-binding protein [Leuconostoc citreum KM20] gi|169804960|gb|ACA83576.1| Putative DNA-binding protein, XRE family [Leuconostoc citreum KM20] Length = 198 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ T + + RK ++TQ+++A +++ +ENG I + L N Y S D I Sbjct: 2 ELSTILVEQRKKKDETQQKVADNLFITRQSLSNWENGKNFPDIPMLIELSNYYNFSLDII 61 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L RK K +Q + L + +LSN+E G+ P+I ++ LD Sbjct: 1 MELSTILVEQRKKKDETQQKVADNLFITRQSLSNWENGKNFPDIPMLIELSNYYNFSLD- 59 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I GD ++ K K + + K +KK Sbjct: 60 IIKGDTELMNKVQKDYELINTKKANKK 86 >gi|167756113|ref|ZP_02428240.1| hypothetical protein CLORAM_01633 [Clostridium ramosum DSM 1402] gi|237734098|ref|ZP_04564579.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704105|gb|EDS18684.1| hypothetical protein CLORAM_01633 [Clostridium ramosum DSM 1402] gi|229382924|gb|EEO33015.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 76 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+D+R+ + TQK++A N + + + +E G + L +E + D++ + Sbjct: 4 KRIRDLREDKDLTQKQLAEYLNVSQKSYSRYERGERTIDPEILSKLATFHETTVDYLIER 63 Query: 94 EVIDRRYEDVT 104 Y Sbjct: 64 TDDKTDYTKKK 74 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 35/76 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R++ +R+DK ++Q + + L + + S YE+G + + K+ + +D++ Sbjct: 1 MYYKRIRDLREDKDLTQKQLAEYLNVSQKSYSRYERGERTIDPEILSKLATFHETTVDYL 60 Query: 173 YFGDEVIVPKSIKRAK 188 + + K+ + Sbjct: 61 IERTDDKTDYTKKKRR 76 >gi|167463701|ref|ZP_02328790.1| hypothetical phagelike protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384406|ref|ZP_08058092.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150764|gb|EFX44224.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 217 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G IK +R+ TQ+++A + + +E+G + L +++S D+I Sbjct: 5 GEIIKLLREQRGLTQQQLANILGLKTYTTITKWESGDNFPKGKDIKRLSEFFKVSSDYIL 64 Query: 92 DGEVID 97 E + Sbjct: 65 GLEKSN 70 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 G +K +R+ +G++Q + +LG+ +T++ +E G P+ K +++ + K Sbjct: 1 MSTTGEIIKLLREQRGLTQQQLANILGLKTYTTITKWESGDNFPKGKDIKRLSEFFKVSS 60 Query: 170 DWIYFGDEV 178 D+I ++ Sbjct: 61 DYILGLEKS 69 >gi|126739214|ref|ZP_01754908.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126719831|gb|EBA16539.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 462 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 30/90 (33%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R+ TQK+ A +N EN S L L E+ + + Sbjct: 9 GAKLREMRQRLELTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGMDVTELSA 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + L +R Sbjct: 69 GDSERLVSDMREAMADPVFAEDPPPLADLR 98 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ +R+ ++Q +F LG+ L+ E + Q + Sbjct: 6 LYAGAKLREMRQRLELTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGMDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSAGDSERLVSDMREA 81 >gi|152975865|ref|YP_001375382.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024617|gb|ABS22387.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 66 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+S+ E+G+ P ++ A I + + +D Sbjct: 1 MAFITKIKEARARLHMTQEDLAKRVGVRRETISHLEKGKYNPSLQLAHDIAKTLQTTIDE 60 Query: 172 IYFGDE 177 I+ DE Sbjct: 61 IFIFDE 66 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +IK+ R + TQ+++A ++ E G + S++ A + + + D I+ Sbjct: 6 KIKEARARLHMTQEDLAKRVGVRRETISHLEKGKYNPSLQLAHDIAKTLQTTIDEIF 62 >gi|152979702|ref|YP_001345331.1| XRE family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150841425|gb|ABR75396.1| transcriptional regulator, XRE family [Actinobacillus succinogenes 130Z] Length = 114 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 33/85 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K +G RI+ RK + +++A + + ++ +E G ++ + + + + Sbjct: 8 EADKLIGQRIQQKRKEMGFSAEKLAEYIDLSQQQLSRYERGASKINVAHLIDIAIFLKTP 67 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDP 111 W + + + + D Sbjct: 68 ISWFFQDCFPNESLVNNLSMSESDQ 92 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ RK+ G S + + + + LS YE+G + + I K + W + Sbjct: 15 QRIQQKRKEMGFSAEKLAEYIDLSQQQLSRYERGASKINVAHLIDIAIFLKTPISWFF 72 >gi|312126655|ref|YP_003991529.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776674|gb|ADQ06160.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 77 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 31/75 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +++++R +Q+++A A +S + E+ + +I+ L +S + Sbjct: 2 VGKKLRELRIQKRLSQQQLAKIAGVPQSTIWYIESENRNPTIKTMKRLATALGVSIEEFL 61 Query: 92 DGEVIDRRYEDVTNK 106 D E + Sbjct: 62 DSETKEMITNGSQKN 76 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +L+ +R K +SQ + K+ G+P ST+ E P IK +++ ++ Sbjct: 1 MVGKKLRELRIQKRLSQQQLAKIAGVPQSTIWYIESENRNPTIKTMKRLATALGVSIEEF 60 Query: 173 YFGD 176 + Sbjct: 61 LDSE 64 >gi|240142150|ref|YP_002966660.1| putative transcriptional regulator [Methylobacterium extorquens AM1] gi|240012094|gb|ACS43319.1| Putative transcriptional regulator [Methylobacterium extorquens AM1] Length = 106 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 4/99 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWI 90 G RIK++R A T ++A +S V EN S + ++ D++ Sbjct: 3 FGPRIKELRTAKRMTLDQLAAATGSSKSYVWELENKNPPRPSAEKLSAIAAALGVTVDYL 62 Query: 91 YDGEVIDRRYEDVTNKKRLD---PYAIGARLKSIRKDKG 126 + R +L+ I K G Sbjct: 63 LGSDSQSLGDAQDQAFFREYSGLHPDTKRQLREIAKTLG 101 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLD 170 + G R+K +R K M+ + G S + E P + I +D Sbjct: 1 MSFGPRIKELRTAKRMTLDQLAAATGSSKSYVWELENKNPPRPSAEKLSAIAAALGVTVD 60 Query: 171 WIYFGD 176 ++ D Sbjct: 61 YLLGSD 66 >gi|254463689|ref|ZP_05077100.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206684597|gb|EDZ45079.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 189 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +RKA T ++A N+ ++ E M SI + + ++ Sbjct: 11 LGADIRALRKARGLTLTDVAAVLNRSVGWLSQVERDMSEPSISDLRQIAEALGVPMSMLF 70 Query: 92 DGEVIDRRY 100 Sbjct: 71 AHSGAPAHE 79 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A ++++RK +G++ + +L LS E+ + P I R+I + + ++ Sbjct: 13 ADIRALRKARGLTLTDVAAVLNRSVGWLSQVERDMSEPSISDLRQIAEALGVPMSMLF 70 >gi|166033610|ref|ZP_02236439.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210608449|ref|ZP_03287825.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|317500066|ref|ZP_07958301.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] gi|166026795|gb|EDR45552.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210153068|gb|EEA84074.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|316898551|gb|EFV20587.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +++IRK +GM Q E +G+ +LS E+G P + KI +V Sbjct: 6 MKISHLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVT 65 Query: 169 LDWIYFGDEVIVPKSIKR 186 + + G+ V +S K Sbjct: 66 PNELLSGEWKYVNQSEKE 83 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK Q+E+A +++ E G+ + + +++ + + Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 Query: 92 DGE 94 GE Sbjct: 71 SGE 73 >gi|170719389|ref|YP_001747077.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169757392|gb|ACA70708.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 182 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 29/49 (59%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +G RL++IRK KG+SQ E K G+ NST+S E+ P I RK Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 >gi|33591920|ref|NP_879564.1| putative transcriptional regulator [Bordetella pertussis Tohama I] gi|33595020|ref|NP_882663.1| putative transcriptional regulator [Bordetella parapertussis 12822] gi|33599298|ref|NP_886858.1| putative transcriptional regulator [Bordetella bronchiseptica RB50] gi|33565096|emb|CAE40047.1| putative transcriptional regulator [Bordetella parapertussis] gi|33571564|emb|CAE41050.1| putative transcriptional regulator [Bordetella pertussis Tohama I] gi|33575344|emb|CAE30807.1| putative transcriptional regulator [Bordetella bronchiseptica RB50] gi|332381337|gb|AEE66184.1| putative transcriptional regulator [Bordetella pertussis CS] Length = 147 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K R+K R + TQ+++A + +SAV +ENG S R L +++ D Sbjct: 1 MKTFSDRLKHARALRSLTQQDLARASGLSQSAVASYENGQRQ-SSRSVRKLAAALQVNLD 59 Query: 89 WIYDGEVIDRR 99 W+ G+ Sbjct: 60 WLETGKGSMES 70 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK R + ++Q + + G+ S +++YE G+ + RK+ + +LD Sbjct: 1 MKTFSDRLKHARALRSLTQQDLARASGLSQSAVASYENGQRQ-SSRSVRKLAAALQVNLD 59 Query: 171 WIYFGDEVIV 180 W+ G + Sbjct: 60 WLETGKGSME 69 >gi|295133833|ref|YP_003584509.1| PbsX family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294981848|gb|ADF52313.1| PbsX family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 64 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +R N TQ E+A +N E G S+ A + + + + I+ Sbjct: 3 NRIKVLRAEKNITQAELANRVEVSRQTINAIEKGKFDPSLPLAFKIARLFNLKIEDIFQD 62 Query: 94 EV 95 E Sbjct: 63 EE 64 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 34/64 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R +K ++Q E + + T++ E+G+ P + A KI ++ ++ I+ Sbjct: 1 MKNRIKVLRAEKNITQAELANRVEVSRQTINAIEKGKFDPSLPLAFKIARLFNLKIEDIF 60 Query: 174 FGDE 177 +E Sbjct: 61 QDEE 64 >gi|257897454|ref|ZP_05677107.1| predicted protein [Enterococcus faecium Com12] gi|293377213|ref|ZP_06623419.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] gi|257834019|gb|EEV60440.1| predicted protein [Enterococcus faecium Com12] gi|292644162|gb|EFF62266.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] Length = 82 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T E QY +G RI R+ +Q E+ A ++ ++L E G +++ + L Sbjct: 11 MTEEEAQYAMVLGARIAHAREGLGISQGELGKLAGFNQTTISLIETGKRLPNLKTLIRLS 70 Query: 81 NEYEISF 87 + S Sbjct: 71 KILKKSL 77 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 41/73 (56%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + Y D+T ++ +GAR+ R+ G+SQ E GKL G +T+S E G+ +P +K Sbjct: 5 KKSYADMTEEEAQYAMVLGARIAHAREGLGISQGELGKLAGFNQTTISLIETGKRLPNLK 64 Query: 157 PARKIKQVTKKHL 169 ++ ++ KK L Sbjct: 65 TLIRLSKILKKSL 77 >gi|257871213|ref|ZP_05650866.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805377|gb|EEV34199.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+++ R+ N +Q +A +NL EN + S+ + L + + ++ Sbjct: 2 NRVREFRQKMNLSQNALAKEIGVARQTINLIENNKYNPSLDLCIKLAKVLQTDLNSLF 59 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ R+ +SQ K +G+ T++ E + P + K+ +V + L+ +++ Sbjct: 1 MNRVREFRQKMNLSQNALAKEIGVARQTINLIENNKYNPSLDLCIKLAKVLQTDLNSLFW 60 Query: 175 GDEV 178 E Sbjct: 61 EVES 64 >gi|229074136|ref|ZP_04207183.1| Transcriptional regulator Xre [Bacillus cereus Rock4-18] gi|228709030|gb|EEL61156.1| Transcriptional regulator Xre [Bacillus cereus Rock4-18] Length = 67 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S S + + + ++S + + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSIEELMP 66 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ RK KG +Q F K LG+ S L E+G P ++ + K ++ + Sbjct: 10 IRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSIEELM 65 >gi|227878075|ref|ZP_03996063.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256843789|ref|ZP_05549276.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256849653|ref|ZP_05555085.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262047762|ref|ZP_06020714.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|293381795|ref|ZP_06627770.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312977080|ref|ZP_07788829.1| transcriptional regulator [Lactobacillus crispatus CTV-05] gi|227862335|gb|EEJ69866.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256613694|gb|EEU18896.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256713769|gb|EEU28758.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260571967|gb|EEX28535.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|290921665|gb|EFD98692.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310896408|gb|EFQ45473.1| transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 66 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+++ RK +Q E+A +NL EN + S+ L L + + ++ Sbjct: 2 NRVREYRKQKQISQMELARRIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNTLF 59 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ RK K +SQ+E + +G+ T++ E + P ++ + L+ +++ Sbjct: 1 MNRVREYRKQKQISQMELARRIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNTLFW 60 Query: 175 -GDE 177 GDE Sbjct: 61 DGDE 64 >gi|227549953|ref|ZP_03980002.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227077969|gb|EEI15932.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 436 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ +R+ N+ TQ +MA S +N EN ++ + L + + + Sbjct: 10 GGRIRTVRRDNDLTQMDMAQRLGISTSYLNQLENNQRPLTVSVLVELSRAFGLDPAYF 67 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 28/60 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++++R+D ++Q++ + LG+ S L+ E + + ++ + + DE Sbjct: 13 IRTVRRDNDLTQMDMAQRLGISTSYLNQLENNQRPLTVSVLVELSRAFGLDPAYFSGDDE 72 >gi|254284170|ref|ZP_04959138.1| transcriptional regulator, XRE family with cupin sensor domain [gamma proteobacterium NOR51-B] gi|219680373|gb|EED36722.1| transcriptional regulator, XRE family with cupin sensor domain [gamma proteobacterium NOR51-B] Length = 211 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 5/116 (4%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P I +G R+ ++R+ N +T ++A + S ++ E G + ++ + Sbjct: 24 EPAIDPAALRLGQRVVEMRQNNGQTLDQLASASGVSRSMLSQIERGKANPTLAVTYRIAQ 83 Query: 82 EYEISFDWI-----YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + +S + + D N R D L + +K + E Sbjct: 84 SFGLSIGEMVDDPSLGSPIEVVHGSDPGNLFRDDEECRIRTLSPLHMEKNVEFYEL 139 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R++ G + + G+ S LS E+G+ P + +I Q + + D+ Sbjct: 40 EMRQNNGQTLDQLASASGVSRSMLSQIERGKANPTLAVTYRIAQSFGLSIGEMV--DDPS 97 Query: 180 VPKSIKRAKGNQSSKKSKKDKK 201 + I+ G+ + D++ Sbjct: 98 LGSPIEVVHGSDPGNLFRDDEE 119 >gi|153811887|ref|ZP_01964555.1| hypothetical protein RUMOBE_02280 [Ruminococcus obeum ATCC 29174] gi|149832021|gb|EDM87106.1| hypothetical protein RUMOBE_02280 [Ruminococcus obeum ATCC 29174] Length = 122 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 1/86 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD- 92 +RIK +R+ Q+ +A + ++ +E + + + + ++ D++ Sbjct: 3 SRIKQLREKRGLIQEILAAELGITQQMLSKYERDVTFIKVDILKKIAVYFNVTTDYLLGL 62 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL 118 EV + + LD Y + Sbjct: 63 SEVKRDLQGQMKVNETLDEYYDLVEI 88 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +R+K +R+ +G+ Q LG+ LS YE+ T ++ +KI D++ Sbjct: 1 MESRIKQLREKRGLIQEILAAELGITQQMLSKYERDVTFIKVDILKKIAVYFNVTTDYLL 60 Query: 174 FGDEV 178 EV Sbjct: 61 GLSEV 65 >gi|325846459|ref|ZP_08169374.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481217|gb|EGC84258.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 69 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ IRK N TQ+E+A + ENG + SI A + + ++ + I+ Sbjct: 3 NRLELIRKENKITQEELASILEVSRQTIGSLENGRYNPSIILAFKIARYFGLTIEDIFIY 62 Query: 94 EVIDRRY 100 E D Sbjct: 63 EGEDYEK 69 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK+ ++Q E +L + T+ + E GR P I A KI + ++ I+ Sbjct: 1 MKNRLELIRKENKITQEELASILEVSRQTIGSLENGRYNPSIILAFKIARYFGLTIEDIF 60 Query: 174 FGDEVIVPK 182 + K Sbjct: 61 IYEGEDYEK 69 >gi|319406551|emb|CBI80193.1| transcriptional regulator [Bartonella sp. 1-1C] Length = 137 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 2/99 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTRI+ R TQ+++ + +E G + ++ + + Sbjct: 15 VGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQAIAEIMDVPVSYFF 74 Query: 92 DG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + ++ +D + ++ +R +S Sbjct: 75 DKGISIQSLEGFTESDNNFIDFCSSSEGIQLMRAFTNIS 113 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 +D Y ++ R G++Q + G+ LG+ + YE+G + I + Sbjct: 6 KKPDPMDIYVGTR-IRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQAIAE 64 Query: 164 VTKKHLDWIY 173 + + + + Sbjct: 65 IMDVPVSYFF 74 >gi|320105393|ref|YP_004180983.1| Cupin 2 barrel domain-containing protein [Terriglobus saanensis SP1PR4] gi|319923914|gb|ADV80989.1| Cupin 2 conserved barrel domain protein [Terriglobus saanensis SP1PR4] Length = 233 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 3/95 (3%) Query: 9 TSLKSLQEYTLIITPEIRQYW---KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE 65 + + I E + + K +G RIK +R + E+ S ++ E Sbjct: 2 ATRALPDTTGIQIESEDAEAFITEKRIGERIKALRLKKSMGLVELGRHTGLSASFLSQLE 61 Query: 66 NGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRY 100 G ++R + + ++ ++ E Sbjct: 62 TGRVVPTLRNLARIAMVFSKDLNYFFEPEPRTLFR 96 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 40/83 (48%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + + E + + IG R+K++R K M +E G+ G+ S LS E GR +P Sbjct: 8 DTTGIQIESEDAEAFITEKRIGERIKALRLKKSMGLVELGRHTGLSASFLSQLETGRVVP 67 Query: 154 EIKPARKIKQVTKKHLDWIYFGD 176 ++ +I V K L++ + + Sbjct: 68 TLRNLARIAMVFSKDLNYFFEPE 90 >gi|296875924|ref|ZP_06899984.1| transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296433086|gb|EFH18873.1| transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 77 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 +I T + + K++ ++K R ++ TQ ++A + L E G + ++ L Sbjct: 5 VIKTRKEKHVAKNL--KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLA 62 Query: 79 LRNEYEISFDWIY 91 + + + D ++ Sbjct: 63 ICKTLDKTLDQLF 75 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 Y V ++ A +LK R + M+Q + +G+ T+ E G+ P + Sbjct: 2 YNKVIKTRKEKHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCL 61 Query: 160 KIKQVTKKHLDWIYFG 175 I + K LD +++ Sbjct: 62 AICKTLDKTLDQLFWE 77 >gi|271969009|ref|YP_003343205.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512184|gb|ACZ90462.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 271 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 4/82 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW-- 89 VG ++ R+ +Q ++AI + ++ E G S L L E ++ Sbjct: 14 VGELLRQWRERRRMSQMDLAIQTDISTRHLSFVETGRSKPSRDMILRLAEELDLPLRERN 73 Query: 90 --IYDGEVIDRRYEDVTNKKRL 109 + G E N ++ Sbjct: 74 HLLLSGGFAPVYAETPLNSPQM 95 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R+ + MSQ++ + LS E GR+ P ++ + L Sbjct: 16 ELLRQWRERRRMSQMDLAIQTDISTRHLSFVETGRSKPSRDMILRLAEELDLPL 69 >gi|212697471|ref|ZP_03305599.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM 7454] gi|212675470|gb|EEB35077.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM 7454] Length = 140 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL-YLRNEYEISFDWI 90 GT+++ +R++ N TQ ++A ++ +E G R L + S D++ Sbjct: 11 FGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTSHDYL 70 Query: 91 YDGEVI 96 E Sbjct: 71 VTDEDN 76 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR-KIKQ 163 + K+ + + G +L+ +R+ K ++Q + KL+G+ T+S YE G + P + K+ + Sbjct: 2 SFKKGENMSFGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAE 61 Query: 164 VTKKHLDWIYFGDEVIVPKSIKR--AKGNQSSKK 195 V D++ ++ + + ++ KG + +K+ Sbjct: 62 VLDTSHDYLVTDEDNFILDAREKYGYKGAKDAKE 95 >gi|209919283|ref|YP_002293367.1| putative phage repressor [Escherichia coli SE11] gi|209912542|dbj|BAG77616.1| hypothetical phage repressor [Escherichia coli SE11] Length = 218 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISF 87 K +G R+ + R+ TQ +A A A++ E G S + + + S Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 Query: 88 DWIYDGEVIDRRYEDVTN 105 W+ +G+ D+ +E+ Sbjct: 61 QWLQNGDEKDKHWENNVK 78 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHL 169 ++G RL + R+ G++Q K G+ +S EQG T K+ + Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 Query: 170 DWIYFGDE 177 W+ GDE Sbjct: 61 QWLQNGDE 68 >gi|206564567|ref|YP_002235330.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] gi|198040607|emb|CAR56593.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] Length = 192 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T + A A + ++ E G+ S S+ + + ++ + Sbjct: 16 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGVTVQYFV 75 Query: 92 DGEVIDRR 99 D +R Sbjct: 76 DTPSEERS 83 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 N + D A+G++++++R+ + + G+ LS E+G P + Sbjct: 3 PPTENSRSADAVALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAG 62 Query: 161 IKQVTKKHLDWIY 173 I + + Sbjct: 63 IAHALGVTVQYFV 75 >gi|167747793|ref|ZP_02419920.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662] gi|167653155|gb|EDR97284.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662] Length = 352 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 34/75 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ +R KG++Q + LLG+ ++ +E+ + P+I + ++ + L+ Sbjct: 1 MKINEMIRELRIKKGLTQEQMASLLGVSAPAVNKWEKAVSYPDITLLPALARLLETDLNT 60 Query: 172 IYFGDEVIVPKSIKR 186 + E + I Sbjct: 61 LLSFKEEPTKEEITD 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 27/79 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I+++R TQ++MA AVN +E + I L E + + Sbjct: 2 KINEMIRELRIKKGLTQEQMASLLGVSAPAVNKWEKAVSYPDITLLPALARLLETDLNTL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + + E L Sbjct: 62 LSFKEEPTKEEITDFLNEL 80 >gi|254249643|ref|ZP_04942963.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124876144|gb|EAY66134.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 200 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T + A A + ++ E G+ S S+ + + ++ + Sbjct: 24 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGVTVQYFV 83 Query: 92 DGEVIDRR 99 D +R Sbjct: 84 DTPSEERS 91 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 28/83 (33%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 N + D A+G++++++R+ + + G+ LS E+G Sbjct: 1 MTTTFRPAMVPPTENSRSADAVALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGL 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 P + I + + Sbjct: 61 ASPSLTSLAGIAHALGVTVQYFV 83 >gi|78060967|ref|YP_370875.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968852|gb|ABB10231.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 193 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T + A A + ++ E G+ S S+ + + ++ + Sbjct: 17 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGVTVQYFV 76 Query: 92 DGEVIDRR 99 D +R Sbjct: 77 DTPSEERS 84 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G++++++R+ + + G+ LS E+G P + I + + Sbjct: 16 ALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGVTVQYF 75 Query: 173 Y 173 Sbjct: 76 V 76 >gi|107027653|ref|YP_625164.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693636|ref|YP_839169.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737089|ref|YP_001778349.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105897027|gb|ABF80191.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651636|gb|ABK12276.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169819277|gb|ACA93859.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 192 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G++I+ +R+ +T + A A + ++ E G+ S S+ + + ++ + Sbjct: 16 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGVTVQYFV 75 Query: 92 DGEVIDRR 99 D +R Sbjct: 76 DTPSEERS 83 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 N + D A+G++++++R+ + + G+ LS E+G P + Sbjct: 3 PPTENSRSADAVALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAG 62 Query: 161 IKQVTKKHLDWIY 173 I + + Sbjct: 63 IAHALGVTVQYFV 75 >gi|329851244|ref|ZP_08266001.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328840090|gb|EGF89662.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 152 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 24/70 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E VG R++ RK TQ +A + +E G S + Sbjct: 19 EAHPIDLHVGERVRLKRKELGITQPALATQLKVSFQQLQKYERGFNRISASKLYEIAGAL 78 Query: 84 EISFDWIYDG 93 ++ + +DG Sbjct: 79 DVPIGYFFDG 88 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 26/80 (32%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 + +G R++ RK+ G++Q L + L YE+G Sbjct: 9 PRLAPSKDQTEAHPIDLHVGERVRLKRKELGITQPALATQLKVSFQQLQKYERGFNRISA 68 Query: 156 KPARKIKQVTKKHLDWIYFG 175 +I + + + G Sbjct: 69 SKLYEIAGALDVPIGYFFDG 88 >gi|325690086|gb|EGD32090.1| transcriptional regulator [Streptococcus sanguinis SK115] Length = 108 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + R+K++R + Q E+A A ++L E G + SI AL + + + Sbjct: 36 KEFMMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFN 94 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E KL G+ T+S E+G P I A KI + ++++ Sbjct: 39 MMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVE 98 Query: 171 WIY 173 ++ Sbjct: 99 NVF 101 >gi|313207090|ref|YP_004046267.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312446406|gb|ADQ82761.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315022512|gb|EFT35539.1| putative prophage LambdaCh01, repressor protein [Riemerella anatipestifer RA-YM] gi|325335473|gb|ADZ11747.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 198 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 GT IK IR+ +Q+ A N ++ +E+G + L + ++ D + Sbjct: 4 FGTNIKKIRQIKGLSQQAFADMLNLTRGIISSYEDGRAEPKVETLLRIAQFLDMKADDLI 63 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + + + L Sbjct: 64 SKPLTVNQLANFEEVEDL 81 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +K IR+ KG+SQ F +L + +S+YE GR P+++ +I Q D Sbjct: 1 MTYFGTNIKKIRQIKGLSQQAFADMLNLTRGIISSYEDGRAEPKVETLLRIAQFLDMKAD 60 Query: 171 WIY 173 + Sbjct: 61 DLI 63 >gi|228949497|ref|ZP_04111751.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810220|gb|EEM56587.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 184 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 +VG +I RKA T K +A A+ S ++ E G+ + S++ + I ++ Sbjct: 5 NVGQKIMAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNF 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + +K++ G + +E L+ + T S+ E Sbjct: 65 FLEDTNTEELVVRANQRKKITFPESGNVSYELLSPNLDGSLELA-LMNLLPQTASSIE 121 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++ + RK G++ +L + S LS E+G T P ++ + I Sbjct: 1 MNNINVGQKIMAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 L-FNFFLEDTNTEELVVRANQRKK 83 >gi|222825166|dbj|BAH22323.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 110 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 29/92 (31%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R TQ E+ + +ENG L I+ Sbjct: 2 ELGKKIKELRLYCGLTQTELGKRIGVSYRQIQRYENGSNHILASRLYDLAKALSINVADF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + D +L R K +R Sbjct: 62 FTDVHADSHETYDEEILKLVKGYNEIRSKRLR 93 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K +R G++Q E GK +G+ + YE G + + ++ Sbjct: 1 MELGKKIKELRLYCGLTQTELGKRIGVSYRQIQRYENGSNHILASRLYDLAKALSINVAD 60 Query: 172 IYFGD-----EVIVPKSIKRAKGNQSSKKSK 197 + E + +K KG + + Sbjct: 61 FFTDVHADSHETYDEEILKLVKGYNEIRSKR 91 >gi|217964592|ref|YP_002350270.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|290894058|ref|ZP_06557032.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|217333862|gb|ACK39656.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|290556402|gb|EFD89942.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307570843|emb|CAR84022.1| ans operon transcriptional repressor, putative [Listeria monocytogenes L99] Length = 131 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D++ + I ++ Sbjct: 61 DYLLGQQSIPTYAPSELQDEK 81 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P+++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATLYDVSVDYLLG 65 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKK 198 + + K+ K Sbjct: 66 QQSIPTYAPSELQDEKDIGKRMTK 89 >gi|49188540|ref|YP_025638.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola] gi|47525123|gb|AAT35137.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola] gi|320321602|gb|EFW77709.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|330962559|gb|EGH62819.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 116 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G+RIK RK+ TQ +A +++ +E + + + +E Sbjct: 2 MSSIRKIIGSRIKAHRKSRGLTQSALAEAIECEVASIGRYERAETAPDGEQLIKMAEFFE 61 Query: 85 ISFDWIYDGEVI 96 IS + ++ Sbjct: 62 ISPMDLLPVKID 73 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +R+K+ RK +G++Q + + +++ YE+ T P+ + K+ + + + Sbjct: 11 SRIKAHRKSRGLTQSALAEAIECEVASIGRYERAETAPDGEQLIKMAEFFEISPMDLL 68 >gi|134298751|ref|YP_001112247.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051451|gb|ABO49422.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 218 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 51/140 (36%), Gaps = 8/140 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+RIK +R + E++ + +S ++ E+G + + + +S Sbjct: 2 DIGSRIKKLRTYQGLSMNELSRRSGVAQSHLSYVESGQRQPTFDVIERICSGLGLSVAEF 61 Query: 91 YDG----EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 ++ + N+ + + + +K+I + ++ E ST++N Sbjct: 62 FNEGFMPSPYSSDINSLVNEVQNLKPSQVSLIKNIATEFSLTNEELELAAKKSLSTIANR 121 Query: 147 EQGRTIPEIKPARKIKQVTK 166 E + I V Sbjct: 122 ESASGVLHIDLL----DVFG 137 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+R+K +R +G+S E + G+ S LS E G+ P +I + Sbjct: 1 MDIGSRIKKLRTYQGLSMNELSRRSGVAQSHLSYVESGQRQPTFDVIERICSGLGLSVAE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|331001960|ref|ZP_08325480.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411756|gb|EGG91161.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon 107 str. F0167] Length = 73 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R A + +Q+++A +N E G + +IR L + + S D ++ E Sbjct: 5 KLKSARAAKDLSQQQLAEIVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLDELFWEE 64 Query: 95 VIDRRYEDV 103 I++ + + Sbjct: 65 NIEKSPDTM 73 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LKS R K +SQ + +++G+ T++ E+G P I+ I K LD +++ + Sbjct: 6 LKSARAAKDLSQQQLAEIVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLDELFWEEN 65 Query: 178 V 178 + Sbjct: 66 I 66 >gi|302381344|ref|YP_003817167.1| hypothetical protein Bresu_0229 [Brevundimonas subvibrioides ATCC 15264] gi|302191972|gb|ADK99543.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 139 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 5/109 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG R+ + R + Q ++ + +E G S + +++ + Sbjct: 15 RHVGRRVCEKRISLGYNQSDLGRALGLTFQQIQKYEKGANRISASKLWDIARFFKVDVAY 74 Query: 90 IYDG---EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM--SQIEFG 133 + G E D + ++ R + Q + Sbjct: 75 FFQGLNNEQPGVADGAGPAAFEHDFPSTRHTIEIARLAPQLSSRQQKLA 123 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R G +Q + G+ LG+ + YE+G I + K + + + G Sbjct: 23 EKRISLGYNQSDLGRALGLTFQQIQKYEKGANRISASKLWDIARFFKVDVAYFFQG 78 >gi|299138223|ref|ZP_07031402.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298599469|gb|EFI55628.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 64 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +R +Q ++A +VN E G S+ A + ++ + I++ Sbjct: 3 NRLRVLRAEKGWSQADLADRLEVSRQSVNAIETGKYDPSLPLAFRIARLFDQRIEEIFED 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R +KG SQ + L + +++ E G+ P + A +I ++ + ++ I+ Sbjct: 1 MNNRLRVLRAEKGWSQADLADRLEVSRQSVNAIETGKYDPSLPLAFRIARLFDQRIEEIF 60 Query: 174 FGD 176 + Sbjct: 61 EDE 63 >gi|295694790|ref|YP_003588028.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295410392|gb|ADG04884.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 74 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+RI+ RK N TQ+E+A + + + E G + S + I + + Sbjct: 5 LGSRIRAFRKLKNLTQRELADRIHLSVAVLGAIERGAKTPSPHVLRAIGEALGIDEEELV 64 Query: 92 DG 93 G Sbjct: 65 GG 66 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+++ RK K ++Q E + + + L E+G P R I + + + G Sbjct: 7 SRIRAFRKLKNLTQRELADRIHLSVAVLGAIERGAKTPSPHVLRAIGEALGIDEEELVGG 66 >gi|293365795|ref|ZP_06612501.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|306824899|ref|ZP_07458243.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306829820|ref|ZP_07463007.1| transcriptional regulator [Streptococcus mitis ATCC 6249] gi|307703337|ref|ZP_07640281.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315613479|ref|ZP_07888387.1| transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|291315728|gb|EFE56175.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|304427831|gb|EFM30924.1| transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304433110|gb|EFM36082.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307623113|gb|EFO02106.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315314475|gb|EFU62519.1| transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 69 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R ++ ++Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MAKNLKLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 >gi|257867390|ref|ZP_05647043.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873721|ref|ZP_05653374.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257801446|gb|EEV30376.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807885|gb|EEV36707.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 106 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 34 TRIKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R++ +RK TQ +MA ++ +E G I L + + +S D++ Sbjct: 4 DRLRQLRKTRSGLTQAKMAKYLGIAKTTYASYEQGNRMPDIEIQKELADYFNVSLDYL 61 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 113 AIGARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL+ +RK + G++Q + K LG+ +T ++YEQG +P+I+ +++ LD+ Sbjct: 1 MFKDRLRQLRKTRSGLTQAKMAKYLGIAKTTYASYEQGNRMPDIEIQKELADYFNVSLDY 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|229125204|ref|ZP_04254327.1| Helix-turn-helix domain protein [Bacillus cereus 95/8201] gi|228658251|gb|EEL13968.1| Helix-turn-helix domain protein [Bacillus cereus 95/8201] Length = 80 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G+R++DIRK N TQ+++A + SA++ ENG L N +S + + Sbjct: 3 FGSRVRDIRKQKNITQEKLAKKLDFSHASAISFIENGKRRLDAEKIPTLANALGVSINEL 62 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + + D T +++ Sbjct: 63 FFAQNVVEMTTDETEERK 80 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPN-STLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G+R++ IRK K ++Q + K L + S +S E G+ + + + ++ Sbjct: 1 MTFGSRVRDIRKQKNITQEKLAKKLDFSHASAISFIENGKRRLDAEKIPTLANALGVSIN 60 Query: 171 WIYF 174 ++F Sbjct: 61 ELFF 64 >gi|169334129|ref|ZP_02861322.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis DSM 17244] gi|169258846|gb|EDS72812.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis DSM 17244] Length = 294 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K IRK N +Q++ A A+ +E I + + E++IS D + Sbjct: 5 QKLKQIRKKLNLSQEQFAEKIGVSRQAITKWETEGGIADIDNIIRIPKEFDISIDELLKE 64 Query: 94 EVIDRRYEDV 103 E +D Sbjct: 65 EKNINNKKDF 74 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK IRK +SQ +F + +G+ ++ +E I +I +I + +D Sbjct: 1 MKFSQKLKQIRKKLNLSQEQFAEKIGVSRQAITKWETEGGIADIDNIIRIPKEFDISIDE 60 Query: 172 IYFGDEVIVPK 182 + ++ I K Sbjct: 61 LLKEEKNINNK 71 >gi|209551516|ref|YP_002283433.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537272|gb|ACI57207.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 125 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 6/97 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW- 89 G I+ +R +QKEMA N + ++ E+G + + + I +D Sbjct: 4 FGEAIRKLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIWDEA 63 Query: 90 ----IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + R D + + IR Sbjct: 64 EELFLLARSSDPRVVIDTSGLPPEYTEFANRLARRIR 100 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 4/83 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 G ++ +R KG+SQ E + L + + LS E G+ +P ++I Sbjct: 1 MTPFGEAIRKLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIW 60 Query: 168 -HLDWIYFGDEVIVPKSIKRAKG 189 + ++ P+ + G Sbjct: 61 DEAEELFLLARSSDPRVVIDTSG 83 >gi|169826776|ref|YP_001696934.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168991264|gb|ACA38804.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 183 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 32/86 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + Q +++ ++K IR+ + + ++A ++ + E G + ++ + Sbjct: 1 MEQMSRNLAFQLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMR 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 ISF + + +D Sbjct: 61 ISFSSLLQPPTAHFMRYSSKDVPHVD 86 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +LK IR+ + +S + K G+ + L+ E+G P + KI + + Sbjct: 11 QLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMRISFSSLL 67 >gi|167760985|ref|ZP_02433112.1| hypothetical protein CLOSCI_03383 [Clostridium scindens ATCC 35704] gi|167661364|gb|EDS05494.1| hypothetical protein CLOSCI_03383 [Clostridium scindens ATCC 35704] Length = 166 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 26/73 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +RK +Q+E+A + A +E+G I L Y I+ D + Sbjct: 21 ENLIMLRKLKGFSQEEIAEKIDISRQAYGKWESGETIPDIEKCALLAEVYGITIDSLIRE 80 Query: 94 EVIDRRYEDVTNK 106 ++ + Sbjct: 81 YQVENTPMAPAPE 93 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + D + L +RK KG SQ E + + + +E G TIP+I+ + +V Sbjct: 12 RNEDFDLLKENLIMLRKLKGFSQEEIAEKIDISRQAYGKWESGETIPDIEKCALLAEVYG 71 Query: 167 KHLDWIY 173 +D + Sbjct: 72 ITIDSLI 78 >gi|154686724|ref|YP_001421885.1| SinR [Bacillus amyloliquefaciens FZB42] gi|154352575|gb|ABS74654.1| SinR [Bacillus amyloliquefaciens FZB42] Length = 113 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 4/108 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK RK + E+A A +S ++ E + SI++ + ++S + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 91 YDGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 D + D + + K D G K R+ + + Sbjct: 64 LDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQKWRKAQK 111 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDWIY 173 R+K RK+KG S E + G+ S LS+ E+ +T P I+ K+ V + + Sbjct: 6 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLL 64 >gi|74312212|ref|YP_310631.1| hypothetical protein SSON_1704 [Shigella sonnei Ss046] gi|73855689|gb|AAZ88396.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323169618|gb|EFZ55286.1| helix-turn-helix family protein [Shigella sonnei 53G] Length = 178 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 10/123 (8%), Positives = 34/123 (27%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + F ++ + ++ + + Q+ G + Sbjct: 61 VPFSTFISPPQSAMPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG 120 Query: 145 NYE 147 E Sbjct: 121 VIE 123 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 +P Sbjct: 72 SAMPSV 77 >gi|237733521|ref|ZP_04564002.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383354|gb|EEO33445.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 211 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +++IRK +GM Q E +G+ +LS E+G P + KI +V Sbjct: 6 MKISHLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVT 65 Query: 169 LDWIYFGDEVIVPKSIKR 186 + + G+ + +S K Sbjct: 66 PNELLSGEWKYINQSEKE 83 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK Q+E+A +++ E G+ + + +++ + + Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 Query: 92 DGE 94 GE Sbjct: 71 SGE 73 >gi|218678050|ref|ZP_03525947.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 125 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 8/118 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R+ +Q+ +A V +E G+ + S + + Sbjct: 13 VGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIAEVLHTSPSFFF 72 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQIEFGKL--LGMPNSTLSNY 146 + E + + LD A + +R +G+ GM S++ Sbjct: 73 EQENSE-----PLTLQGLDLPANTDPVAEFLRTKEGLVLNRAFLRSPTGMSVKRSSHW 125 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +V +D Y AR+++ R+ GMSQ + +G+ + YE+G ++ Sbjct: 1 MNVKTPNAIDGYVG-ARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQR 59 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIK 185 I +V +F E P +++ Sbjct: 60 IAEVLHTSPS-FFFEQENSEPLTLQ 83 >gi|148927476|ref|ZP_01810976.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] gi|147887172|gb|EDK72640.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] Length = 92 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE--- 84 Y + +G I+ R TQ EMA +SA+N ENG + S+ + + Sbjct: 5 YKQKIGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQNLSMEMLARISDVLNSEI 64 Query: 85 ISF 87 +S Sbjct: 65 VSI 67 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + L IG ++ R +G +Q E K LG S ++ E G ++ +I V Sbjct: 1 MEPLYKQKIGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQNLSMEMLARISDVL 60 Query: 166 K 166 Sbjct: 61 N 61 >gi|106879454|emb|CAJ20007.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 185 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 7/78 (8%), Positives = 27/78 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +++ +R+ + E++ + + +++ E+G + +I + + + Sbjct: 11 VGAQVRRLREFRGLSVAELSRLSGVSRATLSMLESGRGNPTIETVSAIAVALRLPLGDLL 70 Query: 92 DGEVIDRRYEDVTNKKRL 109 + Sbjct: 71 VDPTPPEPVLRPGTPRPQ 88 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A+++ +R+ +G+S E +L G+ +TLS E GR P I+ I + L + Sbjct: 13 AQVRRLREFRGLSVAELSRLSGVSRATLSMLESGRGNPTIETVSAIAVALRLPLGDLLVD 72 Query: 176 DEVIVP 181 P Sbjct: 73 PTPPEP 78 >gi|119384129|ref|YP_915185.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119373896|gb|ABL69489.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 119 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 4/100 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E GM S + ++ + + Sbjct: 9 VGKRIRHRRWMIGMTQQQLAEKVGIKFQQIQKYETGMNRVSASRLWDIAQAVDVPVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 +G + N D A L+ +R M + + Sbjct: 69 EGLEDGHVH----NAVEGDILADKEALQLVRAYYAMPEAQ 104 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G R++ R GM+Q + + +G+ + YE G I Q Sbjct: 1 MKHNVDVHVGKRIRHRRWMIGMTQQQLAEKVGIKFQQIQKYETGMNRVSASRLWDIAQAV 60 Query: 166 KKHLDWIYFG 175 + + + G Sbjct: 61 DVPVSFFFEG 70 >gi|311071093|ref|YP_003976016.1| hypothetical protein BATR1942_20850 [Bacillus atrophaeus 1942] gi|310871610|gb|ADP35085.1| hypothetical protein BATR1942_20850 [Bacillus atrophaeus 1942] Length = 67 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R TQ + A + + L E G + +++ + + + D ++ Sbjct: 3 NRVKMARIEKGWTQSQHAAHVSVTRQTIGLIEKGKYNPTLQLCIAIAKALNQTLDQLF 60 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R +KG +Q + + + T+ E+G+ P ++ I + + LD ++ Sbjct: 1 MVNRVKMARIEKGWTQSQHAAHVSVTRQTIGLIEKGKYNPTLQLCIAIAKALNQTLDQLF 60 Query: 174 FG 175 + Sbjct: 61 WE 62 >gi|262044546|ref|ZP_06017602.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038090|gb|EEW39305.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 193 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI+ R++ + ++A A + ++ E G S + L + Sbjct: 5 EDNLNQRISARIRIERESRGWSLNDLAELAGASRAMIHKIERGESSPTASMLGRLSGAFG 64 Query: 85 ISFDWIY 91 IS + Sbjct: 65 ISMSTLI 71 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ R+ +G S + +L G + + E+G + P ++ + + Sbjct: 14 ARIRIERESRGWSLNDLAELAGASRAMIHKIERGESSPTASMLGRLSGAFGISMSTLIAR 73 Query: 176 DEVIVPKSIKRA 187 E+ K ++ A Sbjct: 74 AEMQEGKLLRFA 85 >gi|224024133|ref|ZP_03642499.1| hypothetical protein BACCOPRO_00855 [Bacteroides coprophilus DSM 18228] gi|224017355|gb|EEF75367.1| hypothetical protein BACCOPRO_00855 [Bacteroides coprophilus DSM 18228] Length = 192 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 32/99 (32%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +IK +R A T +E+A + + E + S+ + + + Sbjct: 5 KIIGEKIKALRTAQEITLEELAERTGLSKEQIESIEQNINIPSLAPLVKIARALGVRLGT 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + + + D + R++ Sbjct: 65 FLDDQPNENGPVVCRCGEADDTISFSNNSPDARQNLHYH 103 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 109 LDPYAIG-ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D I ++K++R + ++ E + G+ + + EQ IP + P KI + Sbjct: 1 MDCTKIIGEKIKALRTAQEITLEELAERTGLSKEQIESIEQNINIPSLAPLVKIARALGV 60 Query: 168 HLDWIY 173 L Sbjct: 61 RLGTFL 66 >gi|209542873|ref|YP_002275102.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530550|gb|ACI50487.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 475 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +R + +Q+ +A S +NL E+ S + + L ++S + + Sbjct: 6 IGHIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVSIEAL 64 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + P IG ++ +R ++ +SQ LG+ S L+ E + K+ + Sbjct: 1 MAPTRIGHIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVS 60 Query: 169 LDWIYFGDE 177 ++ + DE Sbjct: 61 IEALSGVDE 69 >gi|83589109|ref|YP_429118.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572023|gb|ABC18575.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 81 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 36/75 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R G++Q E +L+G+ ++ +N E+G P + A +I + + ++ ++ + Sbjct: 5 LRRVRLQAGLTQSELARLVGLTRASYTNIEKGHKNPSVGTALRIARALNRPVEELFADES 64 Query: 178 VIVPKSIKRAKGNQS 192 V + + Sbjct: 65 PAVQDVKSEGRAMRK 79 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 24/67 (35%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R TQ E+A ++ E G + S+ AL + + ++ E Sbjct: 5 LRRVRLQAGLTQSELARLVGLTRASYTNIEKGHKNPSVGTALRIARALNRPVEELFADES 64 Query: 96 IDRRYED 102 + Sbjct: 65 PAVQDVK 71 >gi|54024079|ref|YP_118321.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54015587|dbj|BAD56957.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 204 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 33/91 (36%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 +Q + P + +++ +R+A + EMA ++ ++ EN S S+ Sbjct: 1 MQREVVGEPPTGGDLEAAIARQVRALRRAAGLSVAEMAAKVGISKAMLSKIENAQTSCSL 60 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 L ++ ++ G R V Sbjct: 61 STVARLAAGLDVPVTSLFRGADSAREAVYVP 91 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI +++++R+ G+S E +G+ + LS E +T + ++ + + Sbjct: 18 AIARQVRALRRAAGLSVAEMAAKVGISKAMLSKIENAQTSCSLSTVARLAAGLDVPVTSL 77 Query: 173 YFGDEVIVP 181 + G + Sbjct: 78 FRGADSARE 86 >gi|328945491|gb|EGG39642.1| transcriptional regulator [Streptococcus sanguinis SK1087] Length = 108 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + R+K++R + Q E+A A ++L E G + SI AL + + + Sbjct: 36 KEFMMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFN 94 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E KL G+ T+S E+G P I A KI + ++++ Sbjct: 39 MMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVE 98 Query: 171 WIY 173 ++ Sbjct: 99 NVF 101 >gi|312794245|ref|YP_004027168.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181385|gb|ADQ41555.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 129 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 36/80 (45%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + DVG R+K++R+ + +++ A +S ++ E+G S ++ + + I+ Sbjct: 14 DFMFDVGRRVKELRELRGLSMTKLSKIARVGQSTLSYIESGRQSPTVDVLERICSALGIT 73 Query: 87 FDWIYDGEVIDRRYEDVTNK 106 + + D + + + Sbjct: 74 LAEFFSPVIKDDLRDPLIQQ 93 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 3/104 (2%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + T+ + +G R+K +R+ +G+S + K+ + STLS E GR P + Sbjct: 3 YNHNTDTDLGSDFMFDVGRRVKELRELRGLSMTKLSKIARVGQSTLSYIESGRQSPTVDV 62 Query: 158 ARKIKQVTKKHLDWIYFG--DEVIVPKSIKRAKGNQSSKKSKKD 199 +I L + + + I++ + +SK SKK+ Sbjct: 63 LERICSALGITLAEFFSPVIKDDLRDPLIQQLEV-YASKLSKKE 105 >gi|291527875|emb|CBK93461.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 205 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ + +G R K R N TQ +A S + +E G + + L L Sbjct: 4 KELRRIIGERAKSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 +S +W+ GE + K+ L A+ ++++ + ++ +F K L Sbjct: 64 VSVEWL-KGETDSYETDITDKKELLIKDAMTGIIENLPTNLDNAEGDFAKNL 114 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 KS R + ++Q +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 15 KSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVEWL-KGET 73 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 74 DSYETDITDKKE 85 >gi|228995761|ref|ZP_04155422.1| hypothetical protein bmyco0003_3600 [Bacillus mycoides Rock3-17] gi|229003381|ref|ZP_04161205.1| hypothetical protein bmyco0002_3590 [Bacillus mycoides Rock1-4] gi|228757871|gb|EEM07092.1| hypothetical protein bmyco0002_3590 [Bacillus mycoides Rock1-4] gi|228764005|gb|EEM12891.1| hypothetical protein bmyco0003_3600 [Bacillus mycoides Rock3-17] Length = 73 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KDV +I +R NN +Q +A +N EN S+ A L + D Sbjct: 7 RKDVKNQIYALRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVD 66 Query: 89 WIYDGEV 95 ++ + Sbjct: 67 KLFLYKQ 73 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 26/59 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ ++R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 11 KNQIYALRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 69 >gi|196035713|ref|ZP_03103116.1| DNA-binding protein [Bacillus cereus W] gi|228913383|ref|ZP_04077016.1| Transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925881|ref|ZP_04088965.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932124|ref|ZP_04095015.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|195991680|gb|EDX55645.1| DNA-binding protein [Bacillus cereus W] gi|228827552|gb|EEM73295.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833896|gb|EEM79449.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846292|gb|EEM91311.1| Transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 66 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R + TQ+++A ++L E G + S+ L + + + + ++ Sbjct: 4 SKIKVARVQLDLTQQQLAAKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 94 EVI 96 E Sbjct: 64 EKE 66 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R ++Q + +G+ T+S E+G+ P + KI K L+ + Sbjct: 1 MAVSKIKVARVQLDLTQQQLAAKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDL 60 Query: 173 YFGDEV 178 ++ ++ Sbjct: 61 FWEEKE 66 >gi|163737915|ref|ZP_02145331.1| 2-amino-3-ketobutyrate coenzyme A ligase [Phaeobacter gallaeciensis BS107] gi|161388531|gb|EDQ12884.1| 2-amino-3-ketobutyrate coenzyme A ligase [Phaeobacter gallaeciensis BS107] Length = 188 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 2/90 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+A + + +A + S V+ E G S +I L ++ F + D Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLDS 73 Query: 94 E--VIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ G ++ + Sbjct: 74 NEAQDSIEILRDGDVPSIENMGEGCLIRIL 103 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK R+ +G+S L G+ S +S E+G + P I + + + + Sbjct: 13 PARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLD 72 Query: 175 GDEVIVPKSIKR 186 +E I R Sbjct: 73 SNEAQDSIEILR 84 >gi|148274004|ref|YP_001223565.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831934|emb|CAN02905.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 68 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R A +Q+ +A +N E G S+ A+ + S + ++ E Sbjct: 8 VRGLRTAAGLSQQSLADALGVSRQTINAIETGRYDPSLALAVKAARFFHRSVEEVFHVED 67 Query: 96 I 96 Sbjct: 68 D 68 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + + ++ +R G+SQ LG+ T++ E GR P + A K + + ++ Sbjct: 1 MSPMRSEVRGLRTAAGLSQQSLADALGVSRQTINAIETGRYDPSLALAVKAARFFHRSVE 60 Query: 171 WIYFGDEV 178 ++ ++ Sbjct: 61 EVFHVEDD 68 >gi|118594424|ref|ZP_01551771.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181] gi|118440202|gb|EAV46829.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181] Length = 516 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 24/93 (25%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG I+++R + T A S ++ E G + + + S Sbjct: 2 QKIVGNNIRELRTLHGLTLNAFAEKLALSPSNLSRIERGSLNIKVSLLQKIAEVLGTSPH 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + + Sbjct: 62 VFFNKYGQNTGPIKSIKDFTHQFRESSRYINEY 94 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 ++ +R G++ F + L + S LS E+G ++ +KI +V + Sbjct: 7 NNIRELRTLHGLTLNAFAEKLALSPSNLSRIERGSLNIKVSLLQKIAEVLGTSPHVFFNK 66 Query: 174 FGDEVIVPKSIKR 186 +G KSIK Sbjct: 67 YGQNTGPIKSIKD 79 >gi|324995381|gb|EGC27293.1| transcriptional regulator [Streptococcus sanguinis SK678] Length = 108 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + R+K++R + Q E+A A ++L E G + SI AL + + + Sbjct: 36 KEFMMQLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIALKIAHIFN 94 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E +L G+ T+S E+G P I A KI + ++++ Sbjct: 39 MMQLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVE 98 Query: 171 WIY 173 ++ Sbjct: 99 NVF 101 >gi|319403635|emb|CBI77220.1| transcriptional regulator [Bartonella rochalimae ATCC BAA-1498] Length = 137 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 2/99 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTRI+ R TQ+++ + +E G + ++ + + Sbjct: 15 VGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQAIAEIMDVPVSYFF 74 Query: 92 DG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + ++ +D + ++ +R +S Sbjct: 75 DKGIGIQSLEGFTESDNNFIDFCSSSEGIQLMRAFTNIS 113 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 +D Y ++ R G++Q + G+ LG+ + YE+G + I + Sbjct: 6 KKPDPMDIYVGTR-IRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQAIAE 64 Query: 164 VTKKHLDWIY 173 + + + + Sbjct: 65 IMDVPVSYFF 74 >gi|317047999|ref|YP_004115647.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316949616|gb|ADU69091.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 181 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ G S + G+ + L E+G + P + KI + G E Sbjct: 12 LKQLRQANGWSLTLAAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFFIQGSE 71 Query: 178 VIVPKSIKRAKGN 190 + + ++ N Sbjct: 72 LPPGAAATFSQTN 84 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 27/74 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K +R+AN + A ++ + E G S ++ + + Sbjct: 1 MENLHQHLSLALKQLRQANGWSLTLAAERTGVSKAMLGQIERGESSPTVATLWKIATGFN 60 Query: 85 ISFDWIYDGEVIDR 98 + F + G + Sbjct: 61 VPFSFFIQGSELPP 74 >gi|300023570|ref|YP_003756181.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299525391|gb|ADJ23860.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 472 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R+ TQ +A S +N E ++ L + + + + ++ Sbjct: 6 MGVRLKRLREERGLTQVALARALELSPSYLNQIEKNQRPLTVPILLKINSVFGVDV-QLF 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + R D+ + L IR+ Sbjct: 65 SEDEEARLIADLKDVLADPGLGEHVALTEIRE 96 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RLK +R+++G++Q+ + L + S L+ E+ + + KI V Sbjct: 1 MRKAFMGVRLKRLREERGLTQVALARALELSPSYLNQIEKNQRPLTVPILLKINSVFGVD 60 Query: 169 LDWIYFGDEV 178 + ++ DE Sbjct: 61 V-QLFSEDEE 69 >gi|167767648|ref|ZP_02439701.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|319938591|ref|ZP_08012978.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] gi|167710665|gb|EDS21244.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|291560782|emb|CBL39582.1| Predicted transcription factor, homolog of eukaryotic MBF1 [butyrate-producing bacterium SSC/2] gi|319806227|gb|EFW02919.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] Length = 223 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 25 IRQYWKDV---GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + Y K + G I+ IRK Q+E+A +++ E G+ + + + Sbjct: 1 MEHYEKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMD 60 Query: 82 EYEISFDWIYDGE 94 ++ + + GE Sbjct: 61 VLGVTPNELLSGE 73 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++IRK +GM Q E +G+ +LS E+G P KI V + + G Sbjct: 13 ENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNELLSG 72 Query: 176 D 176 + Sbjct: 73 E 73 >gi|153003797|ref|YP_001378122.1| XRE family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027370|gb|ABS25138.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. Fw109-5] Length = 224 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 9/85 (10%), Positives = 28/85 (32%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R VG ++ +R + + ++ + + + E G + +I + + Sbjct: 37 ARDLTPVVGANLRRLRNQRGLSLERLSHLSGVSRAMLGQIELGQSAPTINVLWKISSALG 96 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F + + + +L Sbjct: 97 VPFSALITARGSPGPHVLRAEQAKL 121 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A L+ +R +G+S L G+ + L E G++ P I KI + Sbjct: 46 ANLRRLRNQRGLSLERLSHLSGVSRAMLGQIELGQSAPTINVLWKISSALGVPFSALITA 105 Query: 176 DEVIVPKSIK 185 P ++ Sbjct: 106 RGSPGPHVLR 115 >gi|70733319|ref|YP_263093.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68347618|gb|AAY95224.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 182 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WI-YFGDEVIVPKSIK 185 + +F +EV+ + Sbjct: 58 MVEFFSEEVLQETPSQ 73 >gi|319945880|ref|ZP_08020130.1| hypothetical transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747945|gb|EFW00189.1| hypothetical transcriptional regulator [Streptococcus australis ATCC 700641] Length = 228 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQK++A A + +E G+ S L ++ + + Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKKPSKEKVKLLEQILDVPIGYFTEL 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 E++ K + + L ++ K Sbjct: 65 EIVRLYNTLSDEGKN-NALSYVRNLAQKKQCKN 96 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ RK+ M+Q + LG+ S +E+G P + + ++Q+ + + Sbjct: 1 MYQPEKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKKPSKEKVKLLEQILDVPIGY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|296120081|ref|ZP_06838635.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] gi|295967235|gb|EFG80506.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] Length = 440 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI +RK TQ EMA + S +N EN ++ + L + + + Sbjct: 7 GARIHALRKTYGLTQVEMAKQLDLSTSYLNQLENDQRPLTVTVLIQLSEAFNVDSTYF 64 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + GAR+ ++RK G++Q+E K L + S L+ E + + ++ + Sbjct: 1 MSKHFAGARIHALRKTYGLTQVEMAKQLDLSTSYLNQLENDQRPLTVTVLIQLSEAFNVD 60 Query: 169 LDWI 172 + Sbjct: 61 STYF 64 >gi|291541918|emb|CBL15028.1| looped-hinge helix DNA binding domain, AbrB family [Ruminococcus bromii L2-63] Length = 136 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +RK +Q+++A +V +EN + + + +E + + + Sbjct: 2 IGMNLKYLRKKYGYSQEDLAERLEVSRQSVAKWENEESLPDVEKCVTMAQIFETTVEMLL 61 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 32/61 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG LK +RK G SQ + + L + +++ +E ++P+++ + Q+ + ++ + Sbjct: 1 MIGMNLKYLRKKYGYSQEDLAERLEVSRQSVAKWENEESLPDVEKCVTMAQIFETTVEML 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|229190704|ref|ZP_04317700.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228592837|gb|EEK50660.1| Transcriptional regulator [Bacillus cereus ATCC 10876] Length = 116 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 2/108 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ RIK IR + Q++ + + V+ FENG S + + + +++ Sbjct: 2 DMKDRIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI-EFGKLLG 137 GE + +D +K + A L ++D + Q+ + L Sbjct: 62 -YGENNEANKDDNKYEKFKEIMAWLEPLPKDKEDMALDQMLAIAQALN 108 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K IR + M+Q +FGK + + T+S +E G+ P + KI + +++ Sbjct: 1 MDMKDRIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 +Y + K K Sbjct: 61 LYGENNEANKDDNKYEK 77 >gi|262201756|ref|YP_003272964.1| hypothetical protein Gbro_1813 [Gordonia bronchialis DSM 43247] gi|262085103|gb|ACY21071.1| Protein of unknown function DUF2083,transcriptional regulator [Gordonia bronchialis DSM 43247] Length = 474 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R++ +R +Q +A S VN EN ++ L L E+++ D+ Sbjct: 3 IGARLRRLRDERGLSQAGLARRVELSTSYVNQLENDQRPITVPVLLTLTREFDLDADYF 61 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGARL+ +R ++G+SQ + + + S ++ E + + + + D+ Sbjct: 1 MFIGARLRRLRDERGLSQAGLARRVELSTSYVNQLENDQRPITVPVLLTLTREFDLDADY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|197337412|ref|YP_002158337.1| transcriptional regulator [Vibrio fischeri MJ11] gi|197314664|gb|ACH64113.1| transcriptional regulator [Vibrio fischeri MJ11] Length = 218 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+KDIR T +E + S ++ EN S + + L +I I Sbjct: 38 DLGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLATGLDIDIPQI 97 Query: 91 YD 92 ++ Sbjct: 98 FE 99 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 +S + I E + E ++ + P +G RLK IR G++ E K G+ STLS Sbjct: 10 VSAEKINMQEAKIVKVEKNNEEQPIAPLDLGQRLKDIRIQLGLTLEEASKRTGLARSTLS 69 Query: 145 NYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 E + P + +K+ + I+ P K A G + +++ K Sbjct: 70 KIENEQISPTFQALQKLATGLDIDIPQIF------EPPKTKGAAGRRDITLAEQGKPHP 122 >gi|223937259|ref|ZP_03629165.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223894044|gb|EEF60499.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 73 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 29/68 (42%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +++ + +G ++ RK +Q+++A A+ V+ E G S ++ + + Sbjct: 5 QKHRRLLGEAVRAKRKEAGFSQEKLAEKADLSAVFVSRIERGKESPTLDNLVKIAKALGT 64 Query: 86 SFDWIYDG 93 + G Sbjct: 65 HVRDLVAG 72 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ RK+ G SQ + + + +S E+G+ P + KI + H+ + G Sbjct: 13 EAVRAKRKEAGFSQEKLAEKADLSAVFVSRIERGKESPTLDNLVKIAKALGTHVRDLVAG 72 >gi|254828625|ref|ZP_05233312.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258601024|gb|EEW14349.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] Length = 131 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D++ + I ++ Sbjct: 61 DYLLGQQSIPTYAPSELQNEK 81 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P+++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATLYDVSVDYLLG 65 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKK 198 + + K+ K Sbjct: 66 QQSIPTYAPSELQNEKDVGKRITK 89 >gi|28210273|ref|NP_781217.1| transcriptional regulator [Clostridium tetani E88] gi|28202709|gb|AAO35154.1| transcriptional regulator [Clostridium tetani E88] Length = 436 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A G ++L E+G + S+ YL ++S +++ Sbjct: 8 LGEKIKRRRKELNMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLSEALDVSIEYLM 66 Query: 92 DGEVI 96 + E Sbjct: 67 ETEET 71 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ ++G ++K RK+ M+ + + +S E G++ P + + + Sbjct: 1 MNMEILSLGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLSEALD 59 Query: 167 KHLDWIYFGDEVIVPKS 183 ++++ +E K Sbjct: 60 VSIEYLMETEETQAEKV 76 >gi|23099979|ref|NP_693445.1| post-exponential-phase response transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22778210|dbj|BAC14480.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Oceanobacillus iheyensis HTE831] Length = 108 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 5/104 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G +IK +R + E+A A +S ++ E + SI++ + N ++ + I Sbjct: 2 IGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQSNPSIQFIEKISNVLGVTVNEI 61 Query: 91 YDGEVIDRRYEDVTNKKR----LDPYAIGARLKSIRKDKGMSQI 130 D D + + + K + Q Sbjct: 62 ILENNNDDADLDEEWMQIVQEAMKSGVSKEQFKEYLEFNKWRQK 105 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R +K MS E + G+ S LS+ E+ ++ P I+ KI V ++ Sbjct: 1 MIGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQSNPSIQFIEKISNVLGVTVNE 60 Query: 172 IYF----GDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 I D + + ++ + S SK+ K Sbjct: 61 IILENNNDDADLDEEWMQIVQEAMKSGVSKEQFKE 95 >gi|311897916|dbj|BAJ30324.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 285 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G ++ +R+ T +E+A +S ++ ENG S S R L + YE+ Sbjct: 11 RRRLGAELRRLRELKGMTAEEVAGRLMVSQSKISRLENGRRSISQRDVRDLCDVYEV 67 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A L+ +R+ KGM+ E L + S +S E GR + R + V + Sbjct: 16 AELRRLRELKGMTAEEVAGRLMVSQSKISRLENGRRSISQRDVRDLCDVYEV-------E 68 Query: 176 DEVIVPKSIKRAKGNQ 191 DE + ++ AK ++ Sbjct: 69 DERVRAGLMEMAKESR 84 >gi|15900264|ref|NP_344868.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|15902345|ref|NP_357895.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|111657195|ref|ZP_01407970.1| hypothetical protein SpneT_02001592 [Streptococcus pneumoniae TIGR4] gi|116515521|ref|YP_815820.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|148983739|ref|ZP_01817058.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP3-BS71] gi|148988089|ref|ZP_01819552.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP6-BS73] gi|148996747|ref|ZP_01824465.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP11-BS70] gi|149013057|ref|ZP_01833923.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP19-BS75] gi|149018025|ref|ZP_01834484.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP23-BS72] gi|168484208|ref|ZP_02709160.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|168486615|ref|ZP_02711123.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|168490753|ref|ZP_02714896.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168576734|ref|ZP_02722592.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|169833560|ref|YP_001693853.1| hypothetical protein SPH_0443 [Streptococcus pneumoniae Hungary19A-6] gi|194396813|ref|YP_002037017.1| transcriptional regulator [Streptococcus pneumoniae G54] gi|225853916|ref|YP_002735428.1| hypothetical protein SPJ_0326 [Streptococcus pneumoniae JJA] gi|225856074|ref|YP_002737585.1| hypothetical protein SPP_0367 [Streptococcus pneumoniae P1031] gi|225858186|ref|YP_002739696.1| hypothetical protein SP70585_0396 [Streptococcus pneumoniae 70585] gi|298254745|ref|ZP_06978331.1| hypothetical protein SpneCM_03900 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502137|ref|YP_003724077.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259428|ref|ZP_07345405.1| hypothetical protein CGSSp9vBS293_07336 [Streptococcus pneumoniae SP-BS293] gi|303261183|ref|ZP_07347132.1| hypothetical protein CGSSp14BS292_03428 [Streptococcus pneumoniae SP14-BS292] gi|303263510|ref|ZP_07349433.1| hypothetical protein CGSSpBS397_04091 [Streptococcus pneumoniae BS397] gi|303265803|ref|ZP_07351701.1| hypothetical protein CGSSpBS457_06837 [Streptococcus pneumoniae BS457] gi|303267766|ref|ZP_07353568.1| hypothetical protein CGSSpBS458_09998 [Streptococcus pneumoniae BS458] gi|307066993|ref|YP_003875959.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|307704192|ref|ZP_07641115.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|1536960|emb|CAB01931.1| yorfE [Streptococcus pneumoniae] gi|14971806|gb|AAK74508.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|15457855|gb|AAK99105.1| Transcription regulator [Streptococcus pneumoniae R6] gi|116076097|gb|ABJ53817.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|147757322|gb|EDK64361.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP11-BS70] gi|147763092|gb|EDK70034.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP19-BS75] gi|147923886|gb|EDK74998.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP3-BS71] gi|147926553|gb|EDK77626.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP6-BS73] gi|147931589|gb|EDK82567.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP23-BS72] gi|168996062|gb|ACA36674.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6] gi|172042565|gb|EDT50611.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|183570358|gb|EDT90886.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|183574941|gb|EDT95469.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183577574|gb|EDT98102.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194356480|gb|ACF54928.1| transcriptional regulator, putative [Streptococcus pneumoniae G54] gi|225720654|gb|ACO16508.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|225723727|gb|ACO19580.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|225726347|gb|ACO22199.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|298237732|gb|ADI68863.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793585|emb|CBW35962.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|301799462|emb|CBW32002.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] gi|301801258|emb|CBW33933.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302638020|gb|EFL68506.1| hypothetical protein CGSSp14BS292_03428 [Streptococcus pneumoniae SP14-BS292] gi|302639362|gb|EFL69820.1| hypothetical protein CGSSpBS293_07336 [Streptococcus pneumoniae SP-BS293] gi|302642462|gb|EFL72807.1| hypothetical protein CGSSpBS458_09998 [Streptococcus pneumoniae BS458] gi|302644711|gb|EFL74960.1| hypothetical protein CGSSpBS457_06837 [Streptococcus pneumoniae BS457] gi|302647283|gb|EFL77507.1| hypothetical protein CGSSpBS397_04091 [Streptococcus pneumoniae BS397] gi|306408530|gb|ADM83957.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|307622223|gb|EFO01237.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|332077619|gb|EGI88080.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332203500|gb|EGJ17567.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] gi|332204335|gb|EGJ18400.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 64 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ RK +Q E+A +N+ EN + ++ L L + + ++ Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFWE 61 Query: 94 EVI 96 E Sbjct: 62 EDF 64 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+ G+SQ+E K +G+ T++ E + P ++ + + + L+ +++ Sbjct: 1 MNRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFW 60 Query: 175 GDE 177 ++ Sbjct: 61 EED 63 >gi|323487614|ref|ZP_08092903.1| hypothetical protein HMPREF9474_04654 [Clostridium symbiosum WAL-14163] gi|323399071|gb|EGA91480.1| hypothetical protein HMPREF9474_04654 [Clostridium symbiosum WAL-14163] Length = 266 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 2/103 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++A + +SA+ +E + S + L YE++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEETHLSKSALGSYEGDNLKDISHHALIQLAKVYEVTIDYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 RL + LKS R D + Sbjct: 65 LGRSKTKNHPNAELADLRLSD-DMIELLKSGRVDNSLLCELAA 106 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + S L +YE ++ +V + +D Sbjct: 3 LSIQERLKDLRVERGLTLEQLAEETHLSKSALGSYEGDNLKDISHHALIQLAKVYEVTID 62 Query: 171 WIY 173 ++ Sbjct: 63 YLL 65 >gi|295690255|ref|YP_003593948.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432158|gb|ADG11330.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 64 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q ++A +N E G S+ A + + + I+ Sbjct: 3 NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFRIARLFGQPIEAIFQD 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ + L + T++ E G+ P + A +I ++ + ++ I+ Sbjct: 1 MKNRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFRIARLFGQPIEAIF 60 Query: 174 FGD 176 + Sbjct: 61 QDE 63 >gi|259416970|ref|ZP_05740890.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259348409|gb|EEW60186.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 462 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 29/90 (32%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R TQK+ A +N EN S L L E+ + + Sbjct: 9 GAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSS 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + L +R Sbjct: 69 GDSERLISDMREAMADPVFADDVPPLADLR 98 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ +R G++Q +F LG+ L+ E + Q + Sbjct: 6 LYAGAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSSGDSERLISDMREA 81 >gi|240851124|ref|YP_002972526.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268247|gb|ACS51835.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 4/105 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R + +QK + + +E G S+ L + + E+ ++ Y Sbjct: 13 IGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQKLEVPMNFFY 72 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR----LKSIRKDKGMSQIEF 132 V D + LK+ R+ K Q Sbjct: 73 ADIVTKEDISTKETLSHHDQETYSEKEQALLKNFRELKSKKQKAI 117 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 4/100 (4%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 T IG R++ R G+SQ G LG+ + YE+G + KI Sbjct: 1 MPTKNPHFIDILIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKI 60 Query: 162 KQVTKKHLDWIY----FGDEVIVPKSIKRAKGNQSSKKSK 197 Q + +++ Y +++ +++ S+K + Sbjct: 61 AQKLEVPMNFFYADIVTKEDISTKETLSHHDQETYSEKEQ 100 >gi|218289603|ref|ZP_03493823.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218240253|gb|EED07436.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 436 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +I+ +RKA TQ E+A G S ++ E+ S + ++ + Sbjct: 1 METLGQKIRALRKARGMTQSELARGLA-TASMISQIESDRTMPSAQLLAHIAARLGVDVS 59 Query: 89 WI 90 Sbjct: 60 EF 61 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++++RK +GM+Q E + L S +S E RT+P + I + Sbjct: 6 QKIRALRKARGMTQSELARGL-ATASMISQIESDRTMPSAQLLAHIAARLGVDVSEF 61 >gi|99081720|ref|YP_613874.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038000|gb|ABF64612.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 491 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 29/90 (32%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R TQK+ A +N EN S L L E+ + + Sbjct: 38 GAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSS 97 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + L +R Sbjct: 98 GDSERLISDMREAMADPVFADDVPPLADLR 127 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 31/91 (34%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + + GA+L+ +R G++Q +F LG+ L+ E Sbjct: 20 NSAQFAKASHMATQKLYAGAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTT 79 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 + Q + + GD + ++ A Sbjct: 80 VVLALAQEFGLDVTELSSGDSERLISDMREA 110 >gi|315650099|ref|ZP_07903175.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315487591|gb|EFU77898.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 235 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 33/78 (42%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G+ I+ R++ T +E+A N+ + ++ +E G + + + I Sbjct: 3 EASRKIGSLIRQFRQSKALTIEELAERINKSRATLSKYEKGDIVLDVDTLYDISDALGIQ 62 Query: 87 FDWIYDGEVIDRRYEDVT 104 + + + + + + Sbjct: 63 AEQLLYRKNKEFSFNNKR 80 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ R+ K ++ E + + +TLS YE+G + ++ I + + + Sbjct: 12 IRQFRQSKALTIEELAERINKSRATLSKYEKGDIVLDVDTLYDISDALGIQAEQLLY 68 >gi|302521517|ref|ZP_07273859.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302430412|gb|EFL02228.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 276 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +++ +RKA TQ+++A + + ++ E G ++R + L + +S D Sbjct: 13 REALGVKLRQLRKARGWTQEDLADRSAYSPTHISAIETGRKPPTLRLSRDLDRIFGLSED 72 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ +RK +G +Q + + +S E GR P ++ +R + ++ D Sbjct: 20 LRQLRKARGWTQEDLADRSAYSPTHISAIETGRKPPTLRLSRDLDRIFGLSEDTF 74 >gi|311743857|ref|ZP_07717663.1| HTH_3 family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312987|gb|EFQ82898.1| HTH_3 family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 80 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V RI +R +++++A G + E G S S+ AL + +E+ + ++ Sbjct: 8 VHQRIAMLRAERGISRRDLADGVGVHYQTIGYLERGEFSPSLHLALSIAAFFEVPVEVVF 67 Query: 92 DGEVIDRRYEDV 103 E R E Sbjct: 68 SLEPFPRLGEQT 79 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 30/64 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+ +R ++G+S+ + +G+ T+ E+G P + A I + ++ + Sbjct: 7 VVHQRIAMLRAERGISRRDLADGVGVHYQTIGYLERGEFSPSLHLALSIAAFFEVPVEVV 66 Query: 173 YFGD 176 + + Sbjct: 67 FSLE 70 >gi|226323413|ref|ZP_03798931.1| hypothetical protein COPCOM_01187 [Coprococcus comes ATCC 27758] gi|225208097|gb|EEG90451.1| hypothetical protein COPCOM_01187 [Coprococcus comes ATCC 27758] Length = 119 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R T++E A + A +E G + SI+ + + S D++ Sbjct: 7 ERLKECRLKLGITKQEAAKRVQISQPAYLRYEAGSRNPSIQTIAKMAEVFSTSTDYLVGK 66 Query: 94 EVIDRRYEDVTNKKR 108 V + Sbjct: 67 SADPTPNRIVVVQNE 81 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 29/80 (36%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK R G+++ E K + + YE G P I+ K+ +V D++ Sbjct: 5 DKERLKECRLKLGITKQEAAKRVQISQPAYLRYEAGSRNPSIQTIAKMAEVFSTSTDYLV 64 Query: 174 FGDEVIVPKSIKRAKGNQSS 193 P I + S Sbjct: 65 GKSADPTPNRIVVVQNESPS 84 >gi|209919284|ref|YP_002293368.1| hypothetical protein ECSE_2093 [Escherichia coli SE11] gi|209912543|dbj|BAG77617.1| hypothetical phage protein [Escherichia coli SE11] Length = 167 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 1/106 (0%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++ R+A T E+A + E + +E+G +I + L N Sbjct: 61 LQNKNSAINNRLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANVLG 120 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKGMSQ 129 + GEV ++ D L + K Q Sbjct: 121 CDPMRLLTGEVTPPEQPKSEEQQHHDASQQVCSLSREALLRKNQYQ 166 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI RL++ R+ G++ E +LL + + +E G P I + V + Sbjct: 67 AINNRLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANVLGCDPMRL 126 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 G EV P+ K + Sbjct: 127 LTG-EVTPPEQPKSEEQQH 144 >gi|94497703|ref|ZP_01304271.1| transcriptional regulator, Cro/CI family protein [Sphingomonas sp. SKA58] gi|94422920|gb|EAT07953.1| transcriptional regulator, Cro/CI family protein [Sphingomonas sp. SKA58] Length = 69 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q E+A +VN E G S+ A + + + + + I+ Sbjct: 3 NRLKLLRAERDWSQGELATRLGISRQSVNAIETGKYDPSLPLAFRIADLFALQIEDIFLR 62 Query: 94 EVI 96 + Sbjct: 63 DEE 65 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ E LG+ +++ E G+ P + A +I + ++ I+ Sbjct: 1 MKNRLKLLRAERDWSQGELATRLGISRQSVNAIETGKYDPSLPLAFRIADLFALQIEDIF 60 Query: 174 FGDEV 178 DE Sbjct: 61 LRDEE 65 >gi|49479015|ref|YP_037453.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330571|gb|AAT61217.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 67 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK+ R N TQ+++A ++ E G + S++ A + + D ++ E Sbjct: 6 KIKEYRTKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 95 VI 96 Sbjct: 66 DE 67 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+S+ E+G+ P ++ A I + +D Sbjct: 1 MAFVTKIKEYRTKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60 Query: 172 IYFGDEV 178 ++ ++ Sbjct: 61 VFIFEDE 67 >gi|325971904|ref|YP_004248095.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027142|gb|ADY13901.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 190 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 8/74 (10%), Positives = 29/74 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IR + T ++ + ++ ++ E+ + ++ + + + + Sbjct: 7 IGKNIQRIRNSRKLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKIARGLNVELNDLL 66 Query: 92 DGEVIDRRYEDVTN 105 D + +R + Sbjct: 67 DTDDQPKRVFSLNP 80 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 32/88 (36%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++ IR + ++ + G+ + LS E + P + KI + L+ + Sbjct: 6 MIGKNIQRIRNSRKLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKIARGLNVELNDL 65 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 D+ G+ + K D Sbjct: 66 LDTDDQPKRVFSLNPAGDDAPKMETHDN 93 >gi|229011703|ref|ZP_04168886.1| hypothetical protein bmyco0001_21500 [Bacillus mycoides DSM 2048] gi|228749661|gb|EEL99503.1| hypothetical protein bmyco0001_21500 [Bacillus mycoides DSM 2048] Length = 204 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 35/85 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ + ++ + E G S ++ + N + Sbjct: 20 MEEIQITLAKNLKAIREKEKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKVVLRNDVQVL 104 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKAIREKEKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 88 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 89 PQPDTKVVLRN 99 >gi|229165303|ref|ZP_04293090.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus AH621] gi|228618128|gb|EEK75166.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus AH621] Length = 116 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K++R + TQ+++A G + + FEN ++ + + ++++ D++ Sbjct: 3 FGEKLKELRGSR--TQEDVAKGIEISRARYSHFENDRNEPDLQLIQKIADYHKVTTDYLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 R ++ +K + + + Sbjct: 61 GRAEDSRLTKEDDDKANEMAKKLEKLIAEL 90 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + +Q + K + + + S++E R P+++ +KI K D+ Sbjct: 1 MTFGEKLKELRGSR--TQEDVAKGIEISRARYSHFENDRNEPDLQLIQKIADYHKVTTDY 58 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + E K N+ +KK +K Sbjct: 59 LLGRAEDSRLTKEDDDKANEMAKKLEK 85 >gi|222081941|ref|YP_002541306.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726620|gb|ACM29709.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 471 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ +R TQ MA S +NL E +++ L L + ++I D + Sbjct: 9 GPKVRRVRNGLGMTQIAMADALEISPSYLNLIERNQRPLTVQLLLKLSSAFKIDLDDL 66 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ +R GM+QI L + S L+ E+ + ++ K+ K LD + Sbjct: 12 VRRVRNGLGMTQIAMADALEISPSYLNLIERNQRPLTVQLLLKLSSAFKIDLDDL 66 >gi|91778751|ref|YP_553959.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691411|gb|ABE34609.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 190 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 29/87 (33%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P+ + + R++ +R N + ++A + + ++ EN S + L Sbjct: 6 PDDNAIDRRIAQRLRALRAERNWSLDDLARLSGVSRATLSRLENAAVSPTASVLGKLCVA 65 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRL 109 Y + + D + L Sbjct: 66 YGLPMSRLMHMVEEDFAPLVPRAAQPL 92 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+++R ++ S + +L G+ +TLS E P K+ + + Sbjct: 17 QRLRALRAERNWSLDDLARLSGVSRATLSRLENAAVSPTASVLGKLCVAYGLPMSRLMHM 76 Query: 176 DEVIVPKSIKRA 187 E + RA Sbjct: 77 VEEDFAPLVPRA 88 >gi|86141620|ref|ZP_01060166.1| hypothetical protein MED217_06362 [Leeuwenhoekiella blandensis MED217] gi|85832179|gb|EAQ50634.1| hypothetical protein MED217_06362 [Leeuwenhoekiella blandensis MED217] Length = 193 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + Y +G RI++IRK T +A A ++ ENG S+ L + + Sbjct: 1 MEDYIIGIGKRIREIRKEKGLTINTVASSAEVSNGLISRVENGRTIPSLPVLLNIIAALD 60 Query: 85 ISFDWIYD 92 ++ Sbjct: 61 TEVASFFN 68 Score = 43.8 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ IRK+KG++ + N +S E GRTIP + I + + Sbjct: 10 KRIREIRKEKGLTINTVASSAEVSNGLISRVENGRTIPSLPVLLNIIAALDTEVASFF 67 >gi|258515644|ref|YP_003191866.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779349|gb|ACV63243.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 132 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 25/75 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R++ TQ+ +A ++ +E + + + + S D++ Sbjct: 6 FAQRLKKERESKGWTQEYLADLLKIKIGTLSGYERSYRQPDLDMVIKIAEHLDCSVDYLL 65 Query: 92 DGEVIDRRYEDVTNK 106 + + Sbjct: 66 GRTNQRSHFYEDREP 80 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + RLK R+ KG +Q LL + TLS YE+ P++ KI + Sbjct: 1 MKISIFAQRLKKERESKGWTQEYLADLLKIKIGTLSGYERSYRQPDLDMVIKIAEHLDCS 60 Query: 169 LDWIY 173 +D++ Sbjct: 61 VDYLL 65 >gi|255531810|ref|YP_003092182.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344794|gb|ACU04120.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 258 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 28/76 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + +K +RK TQ++ A S + +E + ++++ D Sbjct: 3 NISSNLKYLRKKKGHTQQQFADAMQIKRSLIGAYEEDRAEPKYDLLKKIAEYFDLTIDEF 62 Query: 91 YDGEVIDRRYEDVTNK 106 + + D ++ Sbjct: 63 INENINDDWKPKPKSQ 78 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I + LK +RK KG +Q +F + + S + YE+ R P+ +KI + +D Sbjct: 1 MSNISSNLKYLRKKKGHTQQQFADAMQIKRSLIGAYEEDRAEPKYDLLKKIAEYFDLTID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + K +++G+ S K N Sbjct: 61 EFINENINDDWKPKPKSQGSNLRILSISVDKDDN 94 >gi|229821739|ref|YP_002883265.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567652|gb|ACQ81503.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 513 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + ++G I+ R+ TQ ++A +SA+ E G + S+ + Sbjct: 6 DTQTSLAEIGALIRGARQNKGLTQAQLAERLGTSQSAIARIEQGSQNLSVELLTRINRAL 65 Query: 84 EISF 87 E Sbjct: 66 EADL 69 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 27/52 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ R++KG++Q + + LG S ++ EQG ++ +I + + L Sbjct: 18 IRGARQNKGLTQAQLAERLGTSQSAIARIEQGSQNLSVELLTRINRALEADL 69 >gi|283796477|ref|ZP_06345630.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075889|gb|EFE13253.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 266 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 2/103 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++A + +SA+ +E S + L Y ++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEAEDFKDISHYALIKLAKFYGVTADYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 L + LKS R D + Sbjct: 65 LGLSQTKNHPNADLADLHLSD-DMIELLKSERVDNSLLCELTA 106 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + S L +YE K+ + D Sbjct: 3 LSIQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEAEDFKDISHYALIKLAKFYGVTAD 62 Query: 171 WIY 173 ++ Sbjct: 63 YLL 65 >gi|329936216|ref|ZP_08286009.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] gi|329304326|gb|EGG48206.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] Length = 196 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 8 NLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R++ +S + G+ N LS E+G P +++ + + + +Y Sbjct: 11 EYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETLY 68 >gi|257792297|ref|YP_003182903.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317490218|ref|ZP_07948706.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA] gi|257476194|gb|ACV56514.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316910712|gb|EFV32333.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ VG RI+++RK+ +Q+++A+ N S + E G + S+ + + Sbjct: 3 QETRTFVGNRIRELRKSQKLSQQKLALMVNVERSYLAKIEGGKRNPSLECIEKISKGLGL 62 Query: 86 SFDWIYDG 93 S + + G Sbjct: 63 SLEEFFKG 70 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R++ +RK + +SQ + ++ + S L+ E G+ P ++ KI + L+ Sbjct: 8 FVGNRIRELRKSQKLSQQKLALMVNVERSYLAKIEGGKRNPSLECIEKISKGLGLSLEEF 67 Query: 173 YFG 175 + G Sbjct: 68 FKG 70 >gi|166364239|ref|YP_001656512.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|159030851|emb|CAO88530.1| unnamed protein product [Microcystis aeruginosa PCC 7806] gi|166086612|dbj|BAG01320.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 103 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G + + R +Q+ +A AN + ++L E G + S+ + L IS + Sbjct: 25 QFGRCLHNARIQKGLSQERLAEAANLDRTYISLLERGKRNPSLLCLISLCRALNISLSEL 84 Query: 91 YD 92 ++ Sbjct: 85 FN 86 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G L + R KG+SQ + + + +S E+G+ P + + + L ++ Sbjct: 26 FGRCLHNARIQKGLSQERLAEAANLDRTYISLLERGKRNPSLLCLISLCRALNISLSELF 85 >gi|154504675|ref|ZP_02041413.1| hypothetical protein RUMGNA_02181 [Ruminococcus gnavus ATCC 29149] gi|153795157|gb|EDN77577.1| hypothetical protein RUMGNA_02181 [Ruminococcus gnavus ATCC 29149] Length = 130 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++RK TQ+E+A + + +E G S R L N+Y ++ +W+ G Sbjct: 3 ERIKELRKTIGITQQELADKLGLKRNTIATYEIGKAIPSDRVISDLCNKYSVNEEWLRSG 62 Query: 94 EVIDRRYEDVT 104 + Sbjct: 63 NGEMFKQPSDE 73 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 35/73 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +RK G++Q E LG+ +T++ YE G+ IP + + + +W+ Sbjct: 1 MNERIKELRKTIGITQQELADKLGLKRNTIATYEIGKAIPSDRVISDLCNKYSVNEEWLR 60 Query: 174 FGDEVIVPKSIKR 186 G+ + + Sbjct: 61 SGNGEMFKQPSDE 73 >gi|1174332|emb|CAA64677.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens] Length = 182 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 D+G R++ +R +N +Q+E+A A S ++L E+ + S+ + + Sbjct: 4 DIGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILD 54 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R +SQ E + G+ NST+S E + P + ++I L + + Sbjct: 9 LRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGLAEFFAFEP 68 Query: 178 VIVPKSIKRAKG 189 K+ RA Sbjct: 69 ETSRKAFYRADE 80 >gi|332654987|ref|ZP_08420729.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516330|gb|EGJ45938.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 118 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK + TQ+E+A ++ + E G + S L IS D + Sbjct: 9 LGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPISLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + +V K L R+ E K L Sbjct: 69 NPDVSPEDEGATQ-MKMLYCSCPSGM----RETLLHHTQETAKEL 108 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK K ++Q E L + +++ E+G+ P + + +V L Sbjct: 5 DLTALGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPISL 64 Query: 170 DWIYFGDEVIVPKSIKRAKG 189 D + D + + K Sbjct: 65 DTLINPDVSPEDEGATQMKM 84 >gi|306824544|ref|ZP_07457890.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306830126|ref|ZP_07463310.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304427652|gb|EFM30748.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304433331|gb|EFM36301.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 64 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q ++A +N+ EN + ++ L L + + ++ Sbjct: 2 NRVKEFRKELGISQLDLAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+ G+SQ++ K +G+ T++ E + P ++ + + + L+ +++ Sbjct: 1 MNRVKEFRKELGISQLDLAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFW 60 Query: 175 GDE 177 D+ Sbjct: 61 EDD 63 >gi|298243400|ref|ZP_06967207.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297556454|gb|EFH90318.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 859 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R++D R + +Q+++A N ++ +E G+ + S + L +E+S + Sbjct: 11 ERLRDARLRRHWSQQDVADQLNVTVVTISRWEQGVTTPSFYFLRQLCALFELSATEL 67 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ RL+ R + SQ + L + T+S +EQG T P R++ + Sbjct: 1 MKQQPISHRRERLRDARLRRHWSQQDVADQLNVTVVTISRWEQGVTTPSFYFLRQLCALF 60 Query: 166 KKHLDWI 172 + + Sbjct: 61 ELSATEL 67 >gi|291543704|emb|CBL16813.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 75 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 28/58 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R A++ Q+E+A + + E G + +++ + + + + + D ++ Sbjct: 4 KRMKIARIAHDMNQEELAKRVGVTRQTIGMIEQGNYNPTLKLCMAICDALDCTLDTLF 61 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+K R M+Q E K +G+ T+ EQG P +K I LD + Sbjct: 1 MKNKRMKIARIAHDMNQEELAKRVGVTRQTIGMIEQGNYNPTLKLCMAICDALDCTLDTL 60 Query: 173 YF 174 ++ Sbjct: 61 FW 62 >gi|297587718|ref|ZP_06946362.1| DNA-binding protein [Finegoldia magna ATCC 53516] gi|297574407|gb|EFH93127.1| DNA-binding protein [Finegoldia magna ATCC 53516] Length = 172 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 7/96 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RK+N +Q+++A + + V+ +E G+ + L S + Sbjct: 4 ENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVLLGE 63 Query: 94 EVIDRRYEDVTN-------KKRLDPYAIGARLKSIR 122 V + + ++ ++K R Sbjct: 64 NVEETQQTELDKISEKLEEINLQFFENKQKKIKIYR 99 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +KS+RK G+SQ + + + T+S +E+G ++P+ K+ ++ + + Sbjct: 1 MLNENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKK 195 G+ V + + K ++ ++ Sbjct: 61 L-GENVEETQQTELDKISEKLEE 82 >gi|37676118|ref|NP_936514.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37200659|dbj|BAC96484.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] Length = 507 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 31/172 (18%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK N+ T ++++ S +++ E G SI + ++ Sbjct: 14 LGTKIRNLRKNNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVFQ 73 Query: 85 ISFDWIYDGEVI-DRRYEDVTNKKRLDPYA------IGARLKSIRKDKGMSQ-----IEF 132 W D E + + N+ L+ A + I + +SQ +F Sbjct: 74 KDPAWFLDDEPELEAITPNKGNRGGLNGMALEPSFLFSNDILQIAIPEMLSQTGITGRQF 133 Query: 133 GKLL-----GMPNSTLSNYEQ-------GRTIPEIKPARKIKQVTKKHLDWI 172 LL + + E+ R + I + + WI Sbjct: 134 AHLLIRAHQEANQNHFPDLERAAEEVGKKRLNLSAEDLIDIAKSLGLDIRWI 185 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK+ ++ + + + + S LS E+G+ +P I I +V Sbjct: 12 HFLGTKIRNLRKNNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K W D+ ++I KGN+ Sbjct: 72 FQKDPAWFL--DDEPELEAITPNKGNR 96 >gi|326424421|ref|NP_763514.2| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|319999811|gb|AAO08504.2| Predicted transcriptional regulator [Vibrio vulnificus CMCP6] Length = 507 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 31/172 (18%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK N+ T ++++ S +++ E G SI + ++ Sbjct: 14 LGTKIRNLRKNNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVFQ 73 Query: 85 ISFDWIYDGEVI-DRRYEDVTNKKRLDPYA------IGARLKSIRKDKGMSQ-----IEF 132 W D E + + N+ L+ A + I + +SQ +F Sbjct: 74 KDPAWFLDDEPELEAITPNKGNRGGLNGMALEPSFLFSNDILQIAIPEMLSQTGITGRQF 133 Query: 133 GKLL-----GMPNSTLSNYEQ-------GRTIPEIKPARKIKQVTKKHLDWI 172 LL + + E+ R + I + + WI Sbjct: 134 AHLLIRAHQEANQNHFPDLERAAEEVGKKRLNLSAEDLIDIAKSLGLDIRWI 185 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK+ ++ + + + + S LS E+G+ +P I I +V Sbjct: 12 HFLGTKIRNLRKNNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K W D+ ++I KGN+ Sbjct: 72 FQKDPAWFL--DDEPELEAITPNKGNR 96 >gi|309701701|emb|CBJ01009.1| putative transcriptional regulator [Escherichia coli ETEC H10407] gi|323937517|gb|EGB33787.1| helix-turn-helix protein [Escherichia coli E1520] Length = 178 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 9/123 (7%), Positives = 33/123 (26%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSATLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + F ++ + ++ + + Q+ G + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG 120 Query: 145 NYE 147 E Sbjct: 121 VIE 123 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + A LK +R+ +G S + G+ + L E+ + P + KI Sbjct: 7 FLSATLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTF 66 Query: 173 YFGDEVIVPKS 183 + P Sbjct: 67 ISPPQSATPSV 77 >gi|295703244|ref|YP_003596319.1| HTH-type transcriptional regulator SinR [Bacillus megaterium DSM 319] gi|294800903|gb|ADF37969.1| HTH-type transcriptional regulator sinR [Bacillus megaterium DSM 319] Length = 120 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWI 90 +G RIK+IR + + +A A +S ++ E G + S++ + + D++ Sbjct: 2 IGERIKEIRLRKHYSITRLAEEAQISKSYLSQIEKGANTNPSLQMLYKIAASLGTTIDYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 D + ++ + ++ + Sbjct: 62 IDEKTDGVTNKESAPYITEEWLSLLNQ 88 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLDW 171 IG R+K IR K S + + S LS E+ T P ++ KI +D+ Sbjct: 1 MIGERIKEIRLRKHYSITRLAEEAQISKSYLSQIEKGANTNPSLQMLYKIAASLGTTIDY 60 Query: 172 IY 173 + Sbjct: 61 LI 62 >gi|268591417|ref|ZP_06125638.1| putative transcriptional regulatory protein [Providencia rettgeri DSM 1131] gi|291313069|gb|EFE53522.1| putative transcriptional regulatory protein [Providencia rettgeri DSM 1131] Length = 185 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 32/83 (38%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ +G +I+ +R+A + + E++ + ++A++ E+G + I + Sbjct: 3 KKINIKIGQKIRLLRQARDLSLNELSRISGISKAALSKLESGDSNPRIDTLESIAIALRF 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKR 108 ++ + Y Sbjct: 63 PLSDLFTRQHEAYPYFLKATPSE 85 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 33/82 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +++ +R+ + +S E ++ G+ + LS E G + P I I + L Sbjct: 6 NIKIGQKIRLLRQARDLSLNELSRISGISKAALSKLESGDSNPRIDTLESIAIALRFPLS 65 Query: 171 WIYFGDEVIVPKSIKRAKGNQS 192 ++ P +K + Sbjct: 66 DLFTRQHEAYPYFLKATPSEKE 87 >gi|59713884|ref|YP_206659.1| transcriptional regulator [Vibrio fischeri ES114] gi|59482132|gb|AAW87771.1| transcriptional regulator [Vibrio fischeri ES114] Length = 218 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+KDIR T +E + S ++ EN S + + L +I I Sbjct: 38 DLGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLATGLDIDIPQI 97 Query: 91 YD 92 ++ Sbjct: 98 FE 99 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 +S + I E + E ++ + P +G RLK IR G++ E K G+ STLS Sbjct: 10 VSAEKINMQEAKIVKVEKNNEEQPIAPLDLGQRLKDIRIQLGLTLEEASKRTGLARSTLS 69 Query: 145 NYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 E + P + +K+ + I+ P K A G + +++ K Sbjct: 70 KIENEQISPTFQALQKLATGLDIDIPQIF------EPPKTKGAAGRRDITLAEQGKPHP 122 >gi|326442440|ref|ZP_08217174.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 196 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 8 NLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ R+ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 11 EYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLYVR 70 Query: 176 ----DEVIVPKSIKRA 187 DE + RA Sbjct: 71 AGILDERDRDELETRA 86 >gi|325523992|gb|EGD02186.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 205 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 1/103 (0%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 +QE T T E + R++D+R T +A + S ++L E S + Sbjct: 1 MQESTSAPTDEAG-INARIARRVRDLRTGQGYTLDALAARSGVSRSMISLIERASASPTA 59 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 L +S ++ GE D R E + + + + A Sbjct: 60 VVLDKLAAGLGVSLAGLFGGERDDVRAEPLVRRAQQAEWRDPA 102 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+ P K+ L ++ G Sbjct: 20 RRVRDLRTGQGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAGLFGG 79 Query: 176 --DEVIVPKSIKRAKGNQ 191 D+V ++RA+ + Sbjct: 80 ERDDVRAEPLVRRAQQAE 97 >gi|295110993|emb|CBL27743.1| Predicted transcriptional regulator with C-terminal CBS domains [Synergistetes bacterium SGP1] Length = 140 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK R+A Q+E+A ++ ++ E+ + S L + + + Sbjct: 4 IGANIKARRRALGMNQEELARKLGVTQANISRIESSVKGLSSDMLLPIASALSCDVRELL 63 Query: 92 DGEVIDRRY 100 + DR Sbjct: 64 GLKCDDRTE 72 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +IGA +K+ R+ GM+Q E + LG+ + +S E I + Sbjct: 1 MASIGANIKARRRALGMNQEELARKLGVTQANISRIESSVKGLSSDMLLPIASALSCDVR 60 Query: 171 WIY 173 + Sbjct: 61 ELL 63 >gi|294814036|ref|ZP_06772679.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294326635|gb|EFG08278.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 29 NLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 88 Query: 91 Y 91 Y Sbjct: 89 Y 89 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ R+ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 32 EYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLYVR 91 Query: 176 ----DEVIVPKSIKRA 187 DE + RA Sbjct: 92 AGILDERDRDELETRA 107 >gi|320009434|gb|ADW04284.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 167 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 8 NLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 11 EYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 68 >gi|253681993|ref|ZP_04862790.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum D str. 1873] gi|253561705|gb|EES91157.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum D str. 1873] Length = 432 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK T K++A G ++L E+G + S+ YL N IS +++ Sbjct: 6 LGEKIKRRRKELGMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLANSLNISIEYLM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEET 69 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K RK+ GM+ + + +S E G++ P + + Sbjct: 1 MEILSLGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANSLNIS 59 Query: 169 LDWIYFGDEVIVPK 182 ++++ +E K Sbjct: 60 IEYLMESEETQAEK 73 >gi|254388551|ref|ZP_05003785.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197702272|gb|EDY48084.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 202 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 14 NLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 73 Query: 91 Y 91 Y Sbjct: 74 Y 74 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ R+ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 17 EYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLYVR 76 Query: 176 ----DEVIVPKSIKRA 187 DE + RA Sbjct: 77 AGILDERDRDELETRA 92 >gi|160942838|ref|ZP_02090078.1| hypothetical protein FAEPRAM212_00315 [Faecalibacterium prausnitzii M21/2] gi|158445890|gb|EDP22893.1| hypothetical protein FAEPRAM212_00315 [Faecalibacterium prausnitzii M21/2] Length = 110 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI++ RK T ++ A + + V E G+ + + + ++S D + Sbjct: 5 LGQRIREQRKEKGWTIEQFAERVDLSANYVGDLERGVKIPKLETFIRIVEVLDVSADVLI 64 Query: 92 DGEVIDRRYEDVTN 105 V + Sbjct: 65 RDSVPSASHVADDE 78 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 39/88 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK+KG + +F + + + + + + E+G IP+++ +I +V D + Sbjct: 7 QRIREQRKEKGWTIEQFAERVDLSANYVGDLERGVKIPKLETFIRIVEVLDVSADVLIRD 66 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + S+ + KK++ Sbjct: 67 SVPSASHVADDELSRKLSQLTPGQKKAA 94 >gi|149924308|ref|ZP_01912679.1| transcriptional regulator, XRE family protein [Plesiocystis pacifica SIR-1] gi|149814844|gb|EDM74411.1| transcriptional regulator, XRE family protein [Plesiocystis pacifica SIR-1] Length = 494 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G++++ R+A TQ E+A S +NL E+ L L E+ + D Sbjct: 15 NLGSKVRAKRRARGMTQAELARRLGISASYLNLIEHNQRPLRAELLLSLAREFGLGLDDF 74 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +++ R+ +GM+Q E + LG+ S L+ E + + + + LD D+ Sbjct: 20 VRAKRRARGMTQAELARRLGISASYLNLIEHNQRPLRAELLLSLAREFGLGLDDFASDDD 79 >gi|238784124|ref|ZP_04628138.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia bercovieri ATCC 43970] gi|238714970|gb|EEQ06968.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia bercovieri ATCC 43970] Length = 196 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 32/86 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R A T K++A ES ++ EN + S S+ L + E + + Sbjct: 14 DLGMRLRHARLAQEITLKQLAQKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDL 73 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + ++ + Sbjct: 74 MAESWVADSPVLKPEQRIRKHFVHRN 99 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ R + ++ + + +G S LS E P + ++ + ++ + Sbjct: 17 MRLRHARLAQEITLKQLAQKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74 >gi|77462437|ref|YP_351941.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126461314|ref|YP_001042428.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|146276727|ref|YP_001166886.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|332560321|ref|ZP_08414643.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77386855|gb|ABA78040.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126102978|gb|ABN75656.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] gi|145554968|gb|ABP69581.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17025] gi|332278033|gb|EGJ23348.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 120 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 30/90 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E GM S + +S + + Sbjct: 9 VGKRIRHRRWMVGMTQQQLADCVGIKFQQIQKYETGMNRVSASRLWDIAEALGVSISFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +G R+ ++S Sbjct: 69 EGLEGAGDQARQAEGDRITDKEALELVRSY 98 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G R++ R GM+Q + +G+ + YE G I + Sbjct: 1 MKHPVDAHVGKRIRHRRWMVGMTQQQLADCVGIKFQQIQKYETGMNRVSASRLWDIAEAL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + + + G E ++ ++A+G++ + K + Sbjct: 61 GVSISFFFEGLEGAGDQA-RQAEGDRITDKEALE 93 >gi|23014107|ref|ZP_00053943.1| COG3800: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 480 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 31/91 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ +Q +A S +N EN ++ L + ++ + Sbjct: 9 LGYKLRRLREGKKLSQAALAALLEVSPSYLNQIENNQRPLTVPVLLRIAKVLDVDLATLV 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + E + + L +R Sbjct: 69 EDEESRLVADLREALNDPVFGSGSIGLSELR 99 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R+ K +SQ LL + S L+ E + + +I +V L + +E Sbjct: 13 LRRLREGKKLSQAALAALLEVSPSYLNQIENNQRPLTVPVLLRIAKVLDVDLATLVEDEE 72 Query: 178 VIVPKSIKRA 187 + ++ A Sbjct: 73 SRLVADLREA 82 >gi|309777338|ref|ZP_07672299.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914879|gb|EFP60658.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 190 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK +R + +Q+ +A + +V+ +E G+ S L + + + + Sbjct: 3 KIKMLRTEHQLSQESLAALLDVSRQSVSKWEKGLSKPSSENLARLAEIFSVHIQDLMND 61 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +R + +SQ LL + ++S +E+G + P + ++ ++ H+ + Sbjct: 4 IKMLRTEHQLSQESLAALLDVSRQSVSKWEKGLSKPSSENLARLAEIFSVHIQDLMND 61 >gi|296533524|ref|ZP_06896097.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296266156|gb|EFH12208.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 208 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 32/86 (37%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 L + P+ + +G ++ +R+ + +E+ ++ E G+ + S+R Sbjct: 14 PLALAPDDGASDRRLGECVRLLRQRLGLSIQELGRRTGLSIGMISQLERGLATPSVRTLR 73 Query: 78 YLRNEYEISFDWIYDGEVIDRRYEDV 103 L ++ + ++ + Sbjct: 74 LLSLALQVPISFFFEERPEGASPRYI 99 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R+ G+S E G+ G+ +S E+G P ++ R + + + + + Sbjct: 30 ECVRLLRQRLGLSIQELGRRTGLSIGMISQLERGLATPSVRTLRLLSLALQVPISFFF 87 >gi|291541946|emb|CBL15056.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 64 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R A + +Q+++A ++ E G + +I + + + + D ++ E Sbjct: 5 RLKSARAAKDLSQQQLAELVKVSRQTISAIEKGDYNPTINLCIAICKALDKTLDELFWEE 64 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LKS R K +SQ + +L+ + T+S E+G P I I + K LD +++ + Sbjct: 6 LKSARAAKDLSQQQLAELVKVSRQTISAIEKGDYNPTINLCIAICKALDKTLDELFWEE 64 >gi|291445816|ref|ZP_06585206.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291348763|gb|EFE75667.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 205 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+A + +++A ++ E G+ S + IS + + Sbjct: 46 NLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 105 Query: 91 Y 91 Y Sbjct: 106 Y 106 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + G+ N LS E+G P +++ + + + +Y Sbjct: 49 EYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETLY 106 >gi|222530442|ref|YP_002574324.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457289|gb|ACM61551.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 143 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 32/71 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I ++R+ T+ +++ + +SA++ E G+ +I + I+ Sbjct: 2 NIGKKIAELREKYGLTRYKLSELSGVSQSALSEIERGIKQPTITTLENICKALNITLADF 61 Query: 91 YDGEVIDRRYE 101 + + + E Sbjct: 62 FAEKEPEIPPE 72 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ +R+ G+++ + +L G+ S LS E+G P I I + L Sbjct: 1 MNIGKKIAELREKYGLTRYKLSELSGVSQSALSEIERGIKQPTITTLENICKALNITLAD 60 Query: 172 IYFGDEVIVPKSIKR 186 + E +P +K Sbjct: 61 FFAEKEPEIPPEVKS 75 >gi|18249875|ref|NP_543063.1| putative lambda repressor [Enterobacteria phage phiP27] gi|18152342|emb|CAC83529.1| putative lambda repressor [Enterobacteria phage phiP27] Length = 218 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISF 87 K +G R+ + R+ TQ +A A A++ E G S + + + S Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 Query: 88 DWIYDGEVIDRRYEDVTN 105 W+ G+ D+ +E+ Sbjct: 61 QWLQSGDEKDKHWENNVK 78 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHL 169 ++G RL + R+ G++Q K G+ +S EQG T K+ + Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 Query: 170 DWIYFGDE 177 W+ GDE Sbjct: 61 QWLQSGDE 68 >gi|325688485|gb|EGD30502.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 150 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK +R A TQ +A + ++AV +E+ + + + + +S D++ Sbjct: 4 VGERIKKLRIAQGFTQARLAEILHVSKAAVCKWESNTNLPKVMELKNMNSLFHVSADYLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + KK +L Sbjct: 64 GLANRSAIEQLSSEKKLEAMAGYFHQL 90 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 29/63 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R+K +R +G +Q ++L + + + +E +P++ + + + D Sbjct: 1 MATVGERIKKLRIAQGFTQARLAEILHVSKAAVCKWESNTNLPKVMELKNMNSLFHVSAD 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|323142572|ref|ZP_08077388.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413005|gb|EFY03908.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 125 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 PEI + +G RI+ R +Q ++ + ++ E G S+ L L Sbjct: 8 PEID--YVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLAFV 65 Query: 83 YEISFDWIYDGEVIDRRYEDVTNK 106 E +FD+ + + N+ Sbjct: 66 LEKNFDYFLLDTPYAKCDSIIDNE 89 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 44/93 (47%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + + +D IG R+++ R +KG SQ + G L+G N+ +S+ E G+T + K+ Sbjct: 4 IETQPEIDYVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLA 63 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 V +K+ D+ SI + KK Sbjct: 64 FVLEKNFDYFLLDTPYAKCDSIIDNEIAAKLKK 96 >gi|320093943|ref|ZP_08025774.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979126|gb|EFW10638.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 76 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V RI +R +++E+A V E G + S+ AL + +E+ + ++ Sbjct: 8 VHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFEVPVESVF 67 Query: 92 DGEVIDR 98 E R Sbjct: 68 SLEEFPR 74 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 33/65 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+ +R D+ +S+ E + LG+ T+ E+G P + A +I + + ++ + Sbjct: 7 VVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFEVPVESV 66 Query: 173 YFGDE 177 + +E Sbjct: 67 FSLEE 71 >gi|294338876|emb|CAZ87213.1| putative Shikimate kinase [Thiomonas sp. 3As] Length = 312 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 15/158 (9%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G R++ +R T+K +AI ++ E + E+G+ + SI L + + S Sbjct: 30 FLIALGERVRALRARRGLTRKAVAIASDVSERHLANLESGVGNASILVLLQVAQALQCSL 89 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP-------- 139 + + + A L +R G G G Sbjct: 90 AELIGDVTTSSPEWLLLRELLEHR--DEATLHRVRAAVGEMLGTGGDNAGRSSRVALIGL 147 Query: 140 ----NSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWI 172 STL P ++ +R+I+Q + I Sbjct: 148 RGAGKSTLGQMLAEDLGFPFVELSREIEQFAGCSIAEI 185 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 28/70 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R++++R +G+++ + L+N E G I ++ Q + L Sbjct: 32 IALGERVRALRARRGLTRKAVAIASDVSERHLANLESGVGNASILVLLQVAQALQCSLAE 91 Query: 172 IYFGDEVIVP 181 + P Sbjct: 92 LIGDVTTSSP 101 >gi|291549648|emb|CBL25910.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 118 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK + TQ+E+A ++ + E G + S L IS D + Sbjct: 9 LGQKMRESRKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPISLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + +V D N+ ++ + + +R+ E K L Sbjct: 69 NPDVSPED--DGANQMKMLYCSCPS---EMRETLLHHTQETAKEL 108 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK K ++Q E L + +++ E+G+ P + + +V L Sbjct: 5 DLTALGQKMRESRKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPISL 64 Query: 170 DWIYFGDEVIVPKSIKRAKG 189 D + D + K Sbjct: 65 DTLINPDVSPEDDGANQMKM 84 >gi|300772908|ref|ZP_07082777.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759079|gb|EFK55906.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 30/76 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + +K IRK TQ++ A ++V +E + ++++ D + Sbjct: 3 NIASNLKYIRKKKGLTQQQFADLMEIKRASVGAYEEDRAEPKYELLKKIAEYFDLTMDEL 62 Query: 91 YDGEVIDRRYEDVTNK 106 + + D+ + Sbjct: 63 ANDVIDDKWKPTPRSN 78 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I + LK IRK KG++Q +F L+ + +++ YE+ R P+ + +KI + +D Sbjct: 1 MSNIASNLKYIRKKKGLTQQQFADLMEIKRASVGAYEEDRAEPKYELLKKIAEYFDLTMD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + ++VI K + N S+ + Sbjct: 61 EL--ANDVIDDKWKPTPRSNASNLR 83 >gi|229488917|ref|ZP_04382783.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229324421|gb|EEN90176.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 62 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+ +R G+SQ LG+ T+ + E+G P + A +I + K +D I+ Sbjct: 1 MRNNLQELRTAAGLSQQACADALGITRQTVISIEKGHFDPRLSLAFRIAEYFDKRVDDIF 60 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++++R A +Q+ A V E G + A + ++ D I+ Sbjct: 3 NNLQELRTAAGLSQQACADALGITRQTVISIEKGHFDPRLSLAFRIAEYFDKRVDDIF 60 >gi|228918176|ref|ZP_04081680.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841456|gb|EEM86595.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 184 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 +VG +I RK T K +A A+ S ++ E G+ + S++ + I ++ Sbjct: 5 NVGQKIMAFRKNAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNF 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + +K++ G + +E L+ + T S+ E Sbjct: 65 FLEDTNTEELVVRANQRKKITFPESGNVSYELLSPNLDGSLELA-LMNLLPQTASSIE 121 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++ + RK+ G++ +L + S LS E+G T P ++ + I Sbjct: 1 MNNINVGQKIMAFRKNAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 L-FNFFLEDTNTEELVVRANQRKK 83 >gi|219853616|ref|YP_002470738.1| hypothetical protein CKR_0273 [Clostridium kluyveri NBRC 12016] gi|219567340|dbj|BAH05324.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 186 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 32/70 (45%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + ++G ++K++R T K M+ ++ FE G+ + ++ + + + Sbjct: 6 IFMNIGEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNVRI 65 Query: 88 DWIYDGEVID 97 ++ +D E + Sbjct: 66 NYFFDDEEKE 75 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + IG ++K +R KG++ + G+ LS +E+G T ++ I V Sbjct: 4 MIIFMNIGEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNV 63 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 +++ + D+ I+ + +K KS Sbjct: 64 RINYFF--DDEEKELIIRSYDQPFVRQINKAIYKS 96 >gi|254466890|ref|ZP_05080301.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206687798|gb|EDZ48280.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 218 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+ + ++ + ++ E G ++ L + + + D + Sbjct: 31 IGPKLRSLRQGKDMGLAQLGEHTGLSAAMLSRIERGQVFPTLATLLRIAMVFGVGLDHFF 90 Query: 92 DGEVIDRRYEDVTNKKRL 109 E V + RL Sbjct: 91 GPGEDAPVLEIVRQRDRL 108 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ L+ Y IG +L+S+R+ K M + G+ G+ + LS E+G+ P + +I V Sbjct: 23 QEGLEAYRIGPKLRSLRQGKDMGLAQLGEHTGLSAAMLSRIERGQVFPTLATLLRIAMVF 82 Query: 166 KKHLDWIYF-GDEVIVPKSIKRAK 188 LD + G++ V + +++ Sbjct: 83 GVGLDHFFGPGEDAPVLEIVRQRD 106 >gi|187932496|ref|YP_001886375.1| hypothetical protein CLL_A2186 [Clostridium botulinum B str. Eklund 17B] gi|187720649|gb|ACD21870.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 78 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK R+ ++Q + GKL+G ++ E + P I A I +V ++ ++ Sbjct: 1 MKNRLKEFREANKLTQEQLGKLVGTSRQAINAIETEKYEPSIWLAYDISKVFNCSIEEVF 60 Query: 174 FGDEVIVPKSIKRAKG 189 +E +++G Sbjct: 61 IFEESKRKSRADQSRG 76 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R+AN TQ+++ A+N E SI A + + S + ++ Sbjct: 3 NRLKEFREANKLTQEQLGKLVGTSRQAINAIETEKYEPSIWLAYDISKVFNCSIEEVFIF 62 Query: 94 EVIDRRYEDVTNK 106 E R+ ++ Sbjct: 63 EESKRKSRADQSR 75 >gi|157363615|ref|YP_001470382.1| cupin 2 domain-containing protein [Thermotoga lettingae TMO] gi|157314219|gb|ABV33318.1| Cupin 2 conserved barrel domain protein [Thermotoga lettingae TMO] Length = 177 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 32/79 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R + TQ+E+A+ + S ++ E+ S ++ + Sbjct: 2 NIGGKIKRLRLSRGLTQEELAMRTDLSRSFISQLESNKTSLAVDTLEKILRALGTDLKAF 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + E + ++ + Sbjct: 62 FSEEEEAKIVFKKEDRIPV 80 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +R +G++Q E + S +S E +T + KI + L + +E Sbjct: 7 IKRLRLSRGLTQEELAMRTDLSRSFISQLESNKTSLAVDTLEKILRALGTDLKAFFSEEE 66 Query: 178 VIVPKSIKRAK 188 K + Sbjct: 67 EAKIVFKKEDR 77 >gi|89053723|ref|YP_509174.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88863272|gb|ABD54149.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 126 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R +TQ+++A + +E GM S + ++ + + Sbjct: 9 VGKRIRHRRWMVGRTQQQLAETVGIKFQQIQKYETGMNRVSASRLWDIGEALDVPVAYFF 68 Query: 92 DGEVIDRRYEDVTNKKRL--DPYAIGARLKSIRKDKGMS 128 +G + D + L D A L+ +R + Sbjct: 69 EGVGSEEVASDTATGEALPGDLLADREALELVRSYYAIP 107 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R G +Q + + +G+ + YE G I + + + + G Sbjct: 11 KRIRHRRWMVGRTQQQLAETVGIKFQQIQKYETGMNRVSASRLWDIGEALDVPVAYFFEG 70 >gi|38257067|ref|NP_940721.1| Orf36 [Pseudomonas syringae pv. syringae] gi|37723844|gb|AAR02170.1| Orf36 [Pseudomonas syringae pv. syringae] Length = 115 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G+RIK RK+ TQ +A +++ +E + + + +E Sbjct: 1 MSSIRKIIGSRIKAHRKSRGLTQSALAEAIECEVASIGRYERAETAPDGEQLIKMAEFFE 60 Query: 85 ISFDWIYDGEVI 96 IS + ++ Sbjct: 61 ISPMDLLPVKID 72 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +R+K+ RK +G++Q + + +++ YE+ T P+ + K+ + + + Sbjct: 10 SRIKAHRKSRGLTQSALAEAIECEVASIGRYERAETAPDGEQLIKMAEFFEISPMDLL 67 >gi|218892158|ref|YP_002441025.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234978|ref|ZP_04928301.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719] gi|126166909|gb|EAZ52420.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719] gi|218772384|emb|CAW28166.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 183 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 22/69 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ +RK T ++A ++ ++ E S + L ++ + Sbjct: 7 IARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSELL 66 Query: 92 DGEVIDRRY 100 + Sbjct: 67 GDAQVPAEP 75 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 31/75 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL ++RK++ ++ + + + + +S E+ ++ P ++ L + Sbjct: 9 RRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSELLGD 68 Query: 176 DEVIVPKSIKRAKGN 190 +V +RA+ Sbjct: 69 AQVPAEPLCRRAQQE 83 >gi|330817706|ref|YP_004361411.1| transcriptional regulator [Burkholderia gladioli BSR3] gi|327370099|gb|AEA61455.1| transcriptional regulator [Burkholderia gladioli BSR3] Length = 183 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V TR++ IRK + +Q+E+A A ++L E S S+ L +S Sbjct: 4 EVATRLQFIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRRY 100 + E D Sbjct: 64 FTFEFEDDAP 73 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+ IRK G+SQ E K G+ N T+S EQ R P + +K+ + L + + Sbjct: 9 LQFIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFFTFE 67 >gi|325979177|ref|YP_004288893.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179105|emb|CBZ49149.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 69 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK R +Q +++ A++ +E G + L +E+S D + Sbjct: 7 QLSKNIKKYRLMKKMSQSDLSKRIGVSHQAISKWETGENYPDFMSLISLAQLFEVSLDIL 66 Query: 91 YD 92 Sbjct: 67 VY 68 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +K R K MSQ + K +G+ + +S +E G P+ + Q+ + LD + + Sbjct: 10 KNIKKYRLMKKMSQSDLSKRIGVSHQAISKWETGENYPDFMSLISLAQLFEVSLDILVY 68 >gi|325268444|ref|ZP_08135076.1| DNA-binding protein [Prevotella multiformis DSM 16608] gi|324989298|gb|EGC21249.1| DNA-binding protein [Prevotella multiformis DSM 16608] Length = 184 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R+K +R++ + +EMA E E G ++ L +Y Sbjct: 1 MDEALKQIGERLKGLRESLEVSVQEMAETCGVTEEKYLKMEGGESDLAVSRLYKLSRKYG 60 Query: 85 ISFDWIYDGEVIDR-RYEDVTNKKRL 109 IS D + GE Y N K + Sbjct: 61 ISLDVLMFGEEPRMGAYFLTRNGKGM 86 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ +S E + G+ E G + + K+ + LD + FG Sbjct: 10 ERLKGLRESLEVSVQEMAETCGVTEEKYLKMEGGESDLAVSRLYKLSRKYGISLDVLMFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + G S + ++ K Sbjct: 70 EEPRMGAYFLTRNGKGMSVERREAYK 95 >gi|296128685|ref|YP_003635935.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296020500|gb|ADG73736.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 446 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V RI+D R+ + +Q ++A A S V+ E G+ L ++ ++ Sbjct: 19 VSERIRDARERSGLSQADLARAAMMHPSYVSHLERGVRGPGDGALERLARALGVTTTYLE 78 Query: 92 DGEVIDRRYEDV 103 GE Sbjct: 79 QGERSPEYQASE 90 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + + R++ R+ G+SQ + + M S +S+ E+G P ++ + + Sbjct: 17 HPVSERIRDARERSGLSQADLARAAMMHPSYVSHLERGVRGPGDGALERLARALGVTTTY 76 Query: 172 IYFGDEVIVPKSIKRA 187 + G+ ++ + A Sbjct: 77 LEQGERSPEYQASEAA 92 >gi|295103897|emb|CBL01441.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ +A A +N E G + +I + + + D ++ E Sbjct: 6 KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILDKTLDELFWEE 65 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK+ R +K M+Q + G+ T++ E+G P I R I ++ K LD +++ + Sbjct: 7 LKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILDKTLDELFWEE 65 >gi|289748952|ref|ZP_06508330.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289689539|gb|EFD56968.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 341 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 12/128 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R +Q +A S +N E+ + ++ L + + + D + Sbjct: 48 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGV--DATF 105 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 D R + LD A + Q E +++ Sbjct: 106 FASQDDTRLVAELREVTLDRDLDIA----------IDQHEVAEMVSAHPGLARAVVNLHR 155 Query: 152 IPEIKPAR 159 I AR Sbjct: 156 RYRITTAR 163 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G+R++ +R ++G SQ ++L + S L+ E + +I +V + Sbjct: 47 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 106 Query: 173 YFGDEVIVPKSIKR 186 D+ + ++ Sbjct: 107 ASQDDTRLVAELRE 120 >gi|289167282|ref|YP_003445549.1| repressor (phage associated) [Streptococcus mitis B6] gi|288906847|emb|CBJ21681.1| repressor (phage associated) [Streptococcus mitis B6] Length = 246 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 8/67 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN--------QLESAVNLFENGMCSTSIRYALYLRNEY 83 +GT+I+++RK N T +E+A N + ++ +EN + + + + Sbjct: 2 IGTKIRELRKNNKLTLEELADALNQKYPNTINFNKGKISKWENNKEEPRLSSVKIIADFF 61 Query: 84 EISFDWI 90 ++ D+ Sbjct: 62 DVPLDYF 68 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 9/88 (10%) Query: 118 LKSIRKDKGMSQIEFGKLLG--------MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ +RK+ ++ E L +S +E + P + + I L Sbjct: 6 IRELRKNNKLTLEELADALNQKYPNTINFNKGKISKWENNKEEPRLSSVKIIADFFDVPL 65 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 D+ + P+ + + K+ K Sbjct: 66 DY-FNDTPDSHPEILTIYNQLEEPKQEK 92 >gi|269794649|ref|YP_003314104.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter keddieii DSM 10542] gi|269096834|gb|ACZ21270.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter keddieii DSM 10542] Length = 509 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT I+D RK + TQ +A +SAVN E G + S+ + + Sbjct: 9 IGTLIRDARKLHGWTQAHLADKIGTSQSAVNRIEKGGQNLSLDTVRRISEALD 61 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D IG ++ RK G +Q +G S ++ E+G + R+I + Sbjct: 1 MTTIDAARIGTLIRDARKLHGWTQAHLADKIGTSQSAVNRIEKGGQNLSLDTVRRISEAL 60 Query: 166 K 166 Sbjct: 61 D 61 >gi|268590993|ref|ZP_06125214.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291313798|gb|EFE54251.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 90 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI + R+ T ++A + ++ +E G + + L DW Sbjct: 14 VGQRILEKRRELGYTGFQLAQLLGVSQQQISRYERGKIKIDLFHLFKLAFLMGTPIDWFL 73 Query: 92 DG 93 + Sbjct: 74 ED 75 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 N Y +G R+ R++ G + + +LLG+ +S YE+G+ ++ K Sbjct: 1 MYSENGSEKIHYMVGQRILEKRRELGYTGFQLAQLLGVSQQQISRYERGKIKIDLFHLFK 60 Query: 161 IKQVTKKHLDWIY 173 + + +DW Sbjct: 61 LAFLMGTPIDWFL 73 >gi|239627346|ref|ZP_04670377.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517492|gb|EEQ57358.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V I+ +R+ N + E++ + +S + E G + +I L N ++ FD + Sbjct: 8 VAKNIRRLREENKLSMDELSKLSGVSKSMLAQIERGEGNPTISTLWKLSNGMKVPFDALT 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 D + L Sbjct: 68 VRPKSPYEIVDTAELQPL 85 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ +R++ +S E KL G+ S L+ E+G P I K+ K D + Sbjct: 10 KNIRRLREENKLSMDELSKLSGVSKSMLAQIERGEGNPTISTLWKLSNGMKVPFDAL 66 >gi|215429287|ref|ZP_03427206.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|219556284|ref|ZP_03535360.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T17] gi|260199463|ref|ZP_05766954.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T46] gi|289441846|ref|ZP_06431590.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289568383|ref|ZP_06448610.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289752496|ref|ZP_06511874.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289414765|gb|EFD12005.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289542136|gb|EFD45785.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289693083|gb|EFD60512.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 474 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 12/128 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R +Q +A S +N E+ + ++ L + + + D + Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 D R + LD A + Q E +++ Sbjct: 64 FASQDDTRLVAELREVTLDRDLDIA----------IDQHEVAEMVSAHPGLARAVVNLHR 113 Query: 152 IPEIKPAR 159 I AR Sbjct: 114 RYRITTAR 121 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 33/78 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+R++ +R ++G SQ ++L + S L+ E + +I +V Sbjct: 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + D+ + ++ Sbjct: 61 ATFFASQDDTRLVAELRE 78 >gi|215425689|ref|ZP_03423608.1| transcriptional regulatory protein [Mycobacterium tuberculosis T92] Length = 299 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 12/128 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R +Q +A S +N E+ + ++ L + + + D + Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 D R + LD A + Q E +++ Sbjct: 64 FASQDDTRLVAELREVTLDRDLDIA----------IDQHEVAEMVSAHPGLARAVVNLHR 113 Query: 152 IPEIKPAR 159 I AR Sbjct: 114 RYRITTAR 121 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 33/78 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+R++ +R ++G SQ ++L + S L+ E + +I +V Sbjct: 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + D+ + ++ Sbjct: 61 ATFFASQDDTRLVAELRE 78 >gi|73749022|ref|YP_308261.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|289433017|ref|YP_003462890.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73660738|emb|CAI83345.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|288946737|gb|ADC74434.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 69 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K +R N+ TQ+E+A V E G S S+ A + + +E + I+ Sbjct: 3 NKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFETPIEEIF 60 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK +R ++Q E LG+ T+ + E+G+ P ++ A KI + + ++ I+ Sbjct: 1 MQNKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFETPIEEIF 60 >gi|86144456|ref|ZP_01062788.1| predicted transcriptional regulator [Vibrio sp. MED222] gi|85837355|gb|EAQ55467.1| predicted transcriptional regulator [Vibrio sp. MED222] Length = 505 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 31/171 (18%) Query: 32 VGTRIKDIRKANNKTQKEMAIG-ANQ------LESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK N+ T ++++ S +++ E G SI + ++ Sbjct: 14 LGTKIRNLRKRNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAQVFQ 73 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKR-------LDPYAIGARLKSIRKDKGMSQ-----IEF 132 + W D E + + + + I + +SQ +F Sbjct: 74 KNPTWFLDDESEQQAIAPDKGNRGGISGMALEPSFLFSNDILQIAIPEMLSQTGISGRQF 133 Query: 133 GKLL-----GMPNSTLSNYEQ-------GRTIPEIKPARKIKQVTKKHLDW 171 LL + + E+ R ++ I + + ++ W Sbjct: 134 AHLLIRAHQESNQNHFPDLERAAEEVGLKRLNLSVEDLIDIARSLEINIRW 184 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ +P I I QV Sbjct: 12 HFLGTKIRNLRKRNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAQV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K+ W D+ ++I KGN+ Sbjct: 72 FQKNPTWFL--DDESEQQAIAPDKGNR 96 >gi|30018872|ref|NP_830503.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|30260845|ref|NP_843222.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42779842|ref|NP_977089.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47525976|ref|YP_017325.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183686|ref|YP_026938.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49476873|ref|YP_034951.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144616|ref|YP_082212.1| transcriptional regulator [Bacillus cereus E33L] gi|65318122|ref|ZP_00391081.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|118476376|ref|YP_893527.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|163938619|ref|YP_001643503.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165872916|ref|ZP_02217540.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635166|ref|ZP_02393482.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641831|ref|ZP_02400071.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170689445|ref|ZP_02880636.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170709002|ref|ZP_02899433.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177652794|ref|ZP_02935167.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190568571|ref|ZP_03021477.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196042062|ref|ZP_03109347.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047106|ref|ZP_03114324.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206977794|ref|ZP_03238684.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217958280|ref|YP_002336826.1| DNA-binding protein [Bacillus cereus AH187] gi|218901889|ref|YP_002449723.1| DNA-binding protein [Bacillus cereus AH820] gi|222094450|ref|YP_002528509.1| transcriptional regulator [Bacillus cereus Q1] gi|225862672|ref|YP_002748050.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227816434|ref|YP_002816443.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228906448|ref|ZP_04070329.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229010123|ref|ZP_04167337.1| Transcriptional regulator [Bacillus mycoides DSM 2048] gi|229056462|ref|ZP_04195875.1| Transcriptional regulator [Bacillus cereus AH603] gi|229089756|ref|ZP_04221016.1| Transcriptional regulator [Bacillus cereus Rock3-42] gi|229108302|ref|ZP_04237921.1| Transcriptional regulator [Bacillus cereus Rock1-15] gi|229120344|ref|ZP_04249594.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|229126121|ref|ZP_04255142.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|229131641|ref|ZP_04260523.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|229137494|ref|ZP_04266105.1| Transcriptional regulator [Bacillus cereus BDRD-ST26] gi|229143419|ref|ZP_04271848.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|229165635|ref|ZP_04293408.1| Transcriptional regulator [Bacillus cereus AH621] gi|229183027|ref|ZP_04310259.1| Transcriptional regulator [Bacillus cereus BGSC 6E1] gi|229195018|ref|ZP_04321795.1| Transcriptional regulator [Bacillus cereus m1293] gi|229602348|ref|YP_002865290.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254684228|ref|ZP_05148088.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254725890|ref|ZP_05187672.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734410|ref|ZP_05192123.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742096|ref|ZP_05199783.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755782|ref|ZP_05207815.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762352|ref|ZP_05214196.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|296501446|ref|YP_003663146.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|301052344|ref|YP_003790555.1| transcriptional regulator [Bacillus anthracis CI] gi|29894414|gb|AAP07704.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|30254294|gb|AAP24708.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42735759|gb|AAS39697.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47501124|gb|AAT29800.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177613|gb|AAT52989.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49328429|gb|AAT59075.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978085|gb|AAU19635.1| transcriptional regulator [Bacillus cereus E33L] gi|118415601|gb|ABK84020.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|163860816|gb|ABY41875.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|164711329|gb|EDR16882.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510179|gb|EDR85585.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529425|gb|EDR92176.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170126104|gb|EDS95000.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170666607|gb|EDT17379.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172081828|gb|EDT66897.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190560365|gb|EDV14344.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196022087|gb|EDX60776.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196027087|gb|EDX65709.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206743991|gb|EDZ55408.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217065587|gb|ACJ79837.1| DNA-binding protein [Bacillus cereus AH187] gi|218536097|gb|ACK88495.1| DNA-binding protein [Bacillus cereus AH820] gi|221238507|gb|ACM11217.1| transcriptional regulator [Bacillus cereus Q1] gi|225788360|gb|ACO28577.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227005797|gb|ACP15540.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228588453|gb|EEK46494.1| Transcriptional regulator [Bacillus cereus m1293] gi|228600484|gb|EEK58072.1| Transcriptional regulator [Bacillus cereus BGSC 6E1] gi|228617870|gb|EEK74922.1| Transcriptional regulator [Bacillus cereus AH621] gi|228640047|gb|EEK96448.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228646052|gb|EEL02275.1| Transcriptional regulator [Bacillus cereus BDRD-ST26] gi|228651867|gb|EEL07822.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|228657328|gb|EEL13145.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|228663154|gb|EEL18744.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|228675139|gb|EEL30364.1| Transcriptional regulator [Bacillus cereus Rock1-15] gi|228693564|gb|EEL47267.1| Transcriptional regulator [Bacillus cereus Rock3-42] gi|228720936|gb|EEL72485.1| Transcriptional regulator [Bacillus cereus AH603] gi|228751256|gb|EEM01068.1| Transcriptional regulator [Bacillus mycoides DSM 2048] gi|228853175|gb|EEM97951.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229266756|gb|ACQ48393.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|296322498|gb|ADH05426.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|300374513|gb|ADK03417.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 66 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R + TQ+++A ++L E G + S+ L + + + + ++ Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 94 EVI 96 E Sbjct: 64 EKE 66 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R ++Q + + +G+ T+S E+G+ P + KI K L+ + Sbjct: 1 MAVSKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDL 60 Query: 173 YFGDEV 178 ++ ++ Sbjct: 61 FWEEKE 66 >gi|239942360|ref|ZP_04694297.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239988825|ref|ZP_04709489.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379] Length = 167 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+A + +++A ++ E G+ S + IS + + Sbjct: 8 NLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + G+ N LS E+G P +++ + + + +Y Sbjct: 11 EYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETLY 68 >gi|311740707|ref|ZP_07714534.1| XRE family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304227|gb|EFQ80303.1| XRE family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 69 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R+ +Q E+A A + E G S S+ AL + +E + + I+ E Sbjct: 8 VRKWRRWVELSQAELAEKAGVSRQTIANIERGNYSPSVHLALDICHELGKTVEEIFGAEQ 67 Query: 96 ID 97 D Sbjct: 68 HD 69 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ R+ +SQ E + G+ T++N E+G P + A I K ++ I+ Sbjct: 5 PNMVRKWRRWVELSQAELAEKAGVSRQTIANIERGNYSPSVHLALDICHELGKTVEEIFG 64 Query: 175 GDE 177 ++ Sbjct: 65 AEQ 67 >gi|209883861|ref|YP_002287718.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209872057|gb|ACI91853.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 208 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 29/88 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +RK +T +A + ++ E G + + L + Sbjct: 20 LGRRIRQLRKMQERTLDSLATEIGLTKGYLSKVETGRQTPPLGTLSKLAKALGTDLAGLV 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + ++ +D + ++ Sbjct: 80 EHGPVEPAEQDFEGVSVVRADERRNVVR 107 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 R++ +RK + + +G+ LS E GR P + K+ + L Sbjct: 22 RRIRQLRKMQERTLDSLATEIGLTKGYLSKVETGRQTPPLGTLSKLAKALGTDL 75 >gi|167768271|ref|ZP_02440324.1| hypothetical protein CLOSS21_02827 [Clostridium sp. SS2/1] gi|167709795|gb|EDS20374.1| hypothetical protein CLOSS21_02827 [Clostridium sp. SS2/1] Length = 84 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R + +Q+++A + L E G + +++ L + + D ++ Sbjct: 24 KRIKIARLECDMSQEDLAKTVGVTRQTIGLIEAGNYNPTLKLCLAICKALNKTLDDLFWE 83 Query: 94 E 94 E Sbjct: 84 E 84 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 33/83 (39%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E I K L R+K R + MSQ + K +G+ T+ E G P Sbjct: 2 EFIIYNSCINRKKGALSEIVKNKRIKIARLECDMSQEDLAKTVGVTRQTIGLIEAGNYNP 61 Query: 154 EIKPARKIKQVTKKHLDWIYFGD 176 +K I + K LD +++ + Sbjct: 62 TLKLCLAICKALNKTLDDLFWEE 84 >gi|49081786|gb|AAT50293.1| PA1884 [synthetic construct] Length = 184 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 21/69 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ +RK T ++A ++ ++ E S + L ++ + Sbjct: 7 IARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSELL 66 Query: 92 DGEVIDRRY 100 Sbjct: 67 GDAQAPAEP 75 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL ++RK++ ++ + + + + +S E+ ++ P ++ L + Sbjct: 9 RRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSELLGD 68 Query: 176 DEVIVPKSIKRAKGN 190 + +RA+ Sbjct: 69 AQAPAEPLCRRAQQE 83 >gi|73661492|ref|YP_300273.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494007|dbj|BAE17328.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 181 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V I D RK + + ++A ++ ++ E G + +I + N IS + Sbjct: 8 VAKNIADYRKKHQLSLDKVANATGVSKNMLSQIEKGQSNPTITTLWKIANGLHISLSQLT 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 + D ++ L Sbjct: 68 STSNDTIDFIDESDIIPL 85 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RK +S + G+ + LS E+G++ P I KI L + Sbjct: 10 KNIADYRKKHQLSLDKVANATGVSKNMLSQIEKGQSNPTITTLWKIANGLHISLSQL 66 >gi|116049838|ref|YP_791355.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585059|gb|ABJ11074.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 183 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 21/69 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ +RK T ++A ++ ++ E S + L ++ + Sbjct: 7 IARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSELL 66 Query: 92 DGEVIDRRY 100 Sbjct: 67 GDAQAPAEP 75 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL ++RK++ ++ + + + + +S E+ ++ P ++ L + Sbjct: 9 RRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSELLGD 68 Query: 176 DEVIVPKSIKRAKGN 190 + +RA+ Sbjct: 69 AQAPAEPLCRRAQQE 83 >gi|15597081|ref|NP_250575.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107101318|ref|ZP_01365236.1| hypothetical protein PaerPA_01002352 [Pseudomonas aeruginosa PACS2] gi|254240277|ref|ZP_04933599.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192] gi|9947875|gb|AAG05273.1|AE004614_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126193655|gb|EAZ57718.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192] Length = 183 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 21/69 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ +RK T ++A ++ ++ E S + L ++ + Sbjct: 7 IARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSELL 66 Query: 92 DGEVIDRRY 100 Sbjct: 67 GDAQAPAEP 75 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL ++RK++ ++ + + + + +S E+ ++ P ++ L + Sbjct: 9 RRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSELLGD 68 Query: 176 DEVIVPKSIKRAKGN 190 + +RA+ Sbjct: 69 AQAPAEPLCRRAQQE 83 >gi|324990569|gb|EGC22505.1| transcriptional regulator [Streptococcus sanguinis SK353] gi|325688320|gb|EGD30339.1| transcriptional regulator [Streptococcus sanguinis SK72] Length = 108 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + R+K++R + Q E+A A ++L E G + SI AL + + + Sbjct: 36 KEFMMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFN 94 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E KL G+ T+S E+G P I A KI + ++++ Sbjct: 39 MMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVE 98 Query: 171 WIY 173 ++ Sbjct: 99 NVF 101 >gi|302345905|ref|YP_003814258.1| cupin domain protein [Prevotella melaninogenica ATCC 25845] gi|302149627|gb|ADK95889.1| cupin domain protein [Prevotella melaninogenica ATCC 25845] Length = 184 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R+K +R++ + + +EMA + E G S+ L +Y Sbjct: 1 MEEAIKLIGERLKGLRESLDISVEEMAETCGVTDEKYLKMEAGESDLSVSRLYKLSQKYG 60 Query: 85 ISFDWIYDGEVI 96 I+ D + GE Sbjct: 61 IALDALMFGEEP 72 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ +S E + G+ + E G + + K+ Q LD + FG Sbjct: 10 ERLKGLRESLDISVEEMAETCGVTDEKYLKMEAGESDLSVSRLYKLSQKYGIALDALMFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + +G S + K K Sbjct: 70 EEPHMCSYFLTRRGKGMSVERKYAYK 95 >gi|229017069|ref|ZP_04173988.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] gi|229023250|ref|ZP_04179760.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228738044|gb|EEL88530.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228744242|gb|EEL94325.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] Length = 404 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSKLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + ++ + K++ Sbjct: 63 EDDDGEIVELITKMEQLIKENKCDEVYKAL 92 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SKLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLLED 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+ + + I K Q K++K D+ Sbjct: 65 DDGEIVELIT--KMEQLIKENKCDE 87 >gi|256376030|ref|YP_003099690.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920333|gb|ACU35844.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 512 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE- 84 R Y VG I+ R+ +Q ++A + +SA+N E G + S+ + + Sbjct: 7 RDYLTRVGGLIRASRRQRGWSQAQLATAVSTSQSAINRIEQGGQNLSLEMLSRISEALDS 66 Query: 85 --ISF 87 +S Sbjct: 67 GIVSI 71 >gi|217077472|ref|YP_002335190.1| transcriptional regulator, XRE family [Thermosipho africanus TCF52B] gi|217037327|gb|ACJ75849.1| transcriptional regulator, XRE family [Thermosipho africanus TCF52B] Length = 177 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 3/91 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK +R A TQ+E+A + S ++ EN S SI + Sbjct: 2 KLGKKIKTLRIARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDLKTF 61 Query: 91 Y---DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + LD Y I + Sbjct: 62 FSTDKRQEKIVFKASERVPMYLDEYGIKGYI 92 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++K++R +G +Q E + S +S E + P I +I +V L Sbjct: 1 MKLGKKIKTLRIARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDLKT 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + D+ K ++ Sbjct: 61 FFSTDKRQEKIVFKASE 77 >gi|169334539|ref|ZP_02861732.1| hypothetical protein ANASTE_00942 [Anaerofustis stercorihominis DSM 17244] gi|169259256|gb|EDS73222.1| hypothetical protein ANASTE_00942 [Anaerofustis stercorihominis DSM 17244] Length = 104 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ +G R+K+ RK TQ+++A N S ++ ENG TS++ + + N +S Sbjct: 5 YRKLGKRLKEERKKQGVTQEKLAEYVNLSVSHLSHIENGNEKTSLQTIVNIANVLNVS 62 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++D +G RLK RK +G++Q + + + + S LS+ E G ++ I V Sbjct: 1 MKIDYRKLGKRLKEERKKQGVTQEKLAEYVNLSVSHLSHIENGNEKTSLQTIVNIANVLN 60 Query: 167 KH 168 Sbjct: 61 VS 62 >gi|134297168|ref|YP_001120903.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140325|gb|ABO56068.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 183 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R++ +R + +Q+E+A A A++L E G S S+ L +S Sbjct: 4 EVAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRR 99 + E+++ R Sbjct: 64 FTFELVESR 72 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R G+SQ E K G+ N +S EQGR P + +K+ + L + Sbjct: 7 ERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 66 Query: 176 DEVIVPKSIKRAK 188 + V + R Sbjct: 67 ELVESRSVVSRRD 79 >gi|116327751|ref|YP_797471.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120495|gb|ABJ78538.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 204 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 25/76 (32%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + + V +K IR + ++A + ++ E G +I + N Sbjct: 14 SSSSEHITEVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIAN 73 Query: 82 EYEISFDWIYDGEVID 97 + F + + + Sbjct: 74 GLNVPFSELLKEKGAE 89 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 2/107 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + + + ++ + LK IR KG S + G+ + LS EQG+ Sbjct: 1 MNPTMEEIETDKESSSSEHITEVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGK 60 Query: 151 TIPEIKPARKIKQVTKKHLDWIY--FGDEVIVPKSIKRAKGNQSSKK 195 ++P I KI + G E ++ + K SS K Sbjct: 61 SVPTISVLWKIANGLNVPFSELLKEKGAEGVIVMKAENTKVLFSSSK 107 >gi|104784313|ref|YP_610811.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95113300|emb|CAK18028.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 182 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL++IRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLSGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F + P+S Sbjct: 58 MVEFFSVELAPES 70 >gi|56695066|ref|YP_165413.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56676803|gb|AAV93469.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 189 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + R+K+ R+A + + +A + S V+ E G S +I L Sbjct: 1 MTENSDDILNRLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLT 60 Query: 81 NEYEIS 86 ++ Sbjct: 61 RALQVD 66 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ARLK R+ +G+S L G+ S +S E+G + P I + + + Sbjct: 13 PARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVD 66 >gi|16119228|ref|NP_395564.1| hypothetical protein SAP028 [Staphylococcus aureus subsp. aureus N315] gi|170780417|ref|YP_001715961.1| hypothetical protein pTZ2162_05 [Staphylococcus aureus] gi|13774167|dbj|BAB43897.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|169264758|dbj|BAG12251.1| hypothetical protein [Staphylococcus aureus] Length = 79 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + IK+ R+ +Q+E+A +V+ +E+ S+ + + + + IS + + Sbjct: 2 KLAEAIKEQRELKRWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G+ ++ N + Sbjct: 62 IKGDARFKKVILEGNYRE 79 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K R+ K SQ E +L + ++S +E + P + + + L+ Sbjct: 1 MKLAEAIKEQRELKRWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEH 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LIKGD 65 >gi|85715936|ref|ZP_01046913.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85697134|gb|EAQ35015.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 77 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + VG + IR TQ++ + + + ++ E G + +I L E+S Sbjct: 4 RRLVGQNVMRIRLEKGLTQEQFSDISGFSQQYLSGLERGKRNPTIVTLYELAKALEVS 61 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 IR +KG++Q +F + G LS E+G+ P I ++ + + Sbjct: 13 RIRLEKGLTQEQFSDISGFSQQYLSGLERGKRNPTIVTLYELAKALEVS 61 >gi|326692328|ref|ZP_08229333.1| hypothetical protein LargK3_00985 [Leuconostoc argentinum KCTC 3773] Length = 241 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R++ TQ+++A AV+ +E + L + +Y + D+ Sbjct: 3 IGHQIKLLRQSKGLTQRDLADTLYISYQAVSNWERHQSQPTADMLLAILEKYHLPHDFFI 62 Query: 92 DGEVIDRRYEDVT 104 E Sbjct: 63 TQSKQQCTQEKEQ 75 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R+ KG++Q + L + +SN+E+ ++ P I + D+ Sbjct: 1 MTIGHQIKLLRQSKGLTQRDLADTLYISYQAVSNWERHQSQPTADMLLAILEKYHLPHDF 60 Query: 172 IYF 174 Sbjct: 61 FIT 63 >gi|325273200|ref|ZP_08139486.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101665|gb|EGB99225.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 182 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 29/49 (59%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +G RL++IRK KG+SQ E K G+ NST+S E+ P I RK Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 >gi|319782361|ref|YP_004141837.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168249|gb|ADV11787.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R T +++ S ++ E G+ + + + N IS ++ Sbjct: 25 LGDRIKAYRTTRRLTLRQLGDMIGTTASFLSQLERGLSGANTSTLMLIANALGISLADLF 84 Query: 92 DGEVIDRRYEDVTNKKR 108 D + +++ Sbjct: 85 DECEVSPHAVLTRSERP 101 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R + ++ + G ++G S LS E+G + I L ++ E Sbjct: 29 IKAYRTTRRLTLRQLGDMIGTTASFLSQLERGLSGANTSTLMLIANALGISLADLFDECE 88 Query: 178 VIVPKSIKRAK 188 V + R++ Sbjct: 89 VSPHAVLTRSE 99 >gi|294499973|ref|YP_003563673.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|295705350|ref|YP_003598425.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294349910|gb|ADE70239.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294803009|gb|ADF40075.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 183 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + +RK N T +++ ++ + E G S ++ + N ++SF Sbjct: 8 IAKNLVKLRKNRNLTLDQVSELTGVSKAMLAQIEKGKSSPTVTTLWKIANGLQVSFSVFM 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 + D + + + Sbjct: 68 KEDTPDVQKVSIKQLDPI 85 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L +RK++ ++ + +L G+ + L+ E+G++ P + KI + Sbjct: 10 KNLVKLRKNRNLTLDQVSELTGVSKAMLAQIEKGKSSPTVTTLWKIANGLQVSFSVFMKE 69 Query: 176 DEVIVPKS 183 D V K Sbjct: 70 DTPDVQKV 77 >gi|302382023|ref|YP_003817846.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192651|gb|ADL00223.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+ +R +G +Q + G+ LG+ ++ E + P + A +I V + ++ I+ Sbjct: 1 MRNTLRDLRTSRGWTQEQLGQALGVSRQAVNALETEKHDPSLDLAYRIAAVFGQPVEAIF 60 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++D+R + TQ+++ AVN E S+ A + + + I+D Sbjct: 5 LRDLRTSRGWTQEQLGQALGVSRQAVNALETEKHDPSLDLAYRIAAVFGQPVEAIFD 61 >gi|239631248|ref|ZP_04674279.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066004|ref|YP_003788027.1| putative transcriptional regulator [Lactobacillus casei str. Zhang] gi|239525713|gb|EEQ64714.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438411|gb|ADK18177.1| Predicted transcriptional regulator [Lactobacillus casei str. Zhang] Length = 62 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I +R TQ+E+A N +N EN ++ A L E + D ++ Sbjct: 3 NNIHALRTHQQLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAERLETTVDQLFQH 62 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + ++R + ++Q E + + T++ E + P + A + + + +D ++ Sbjct: 1 MENNIHALRTHQQLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAERLETTVDQLF 60 >gi|169336953|ref|ZP_02620338.2| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169296221|gb|EDS78354.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 185 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K +R TQ ++A + ++ E + S SI + + + Sbjct: 8 NIGEKLKQLRIEKGLTQMDLASRCELSKGFISQVERDLTSPSIATLVDILECLGTNLKDF 67 Query: 91 YDGEVIDRRYEDVTN 105 ++ + ++ + Sbjct: 68 FNNDEEEKIVFSKED 82 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK +R +KG++Q++ + +S E+ T P I I + +L Sbjct: 7 MNIGEKLKQLRIEKGLTQMDLASRCELSKGFISQVERDLTSPSIATLVDILECLGTNLKD 66 Query: 172 IYFGDEV 178 + DE Sbjct: 67 FFNNDEE 73 >gi|169349646|ref|ZP_02866584.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] gi|169293721|gb|EDS75854.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] Length = 211 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +++IRK +GM Q E +G+ +LS E+G P + KI +V Sbjct: 6 MKISHLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVT 65 Query: 169 LDWIYFGDEVIVPKSIKR 186 + + G+ V +S K Sbjct: 66 PNELLSGEWKYVNQSEKE 83 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK Q+E+A +++ E G+ + + +++ + + Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 Query: 92 DGE 94 GE Sbjct: 71 SGE 73 >gi|218900292|ref|YP_002448703.1| DNA-binding protein [Bacillus cereus G9842] gi|228923896|ref|ZP_04087173.1| hypothetical protein bthur0011_48700 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955409|ref|ZP_04117414.1| hypothetical protein bthur0006_47650 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961399|ref|ZP_04123013.1| hypothetical protein bthur0005_48430 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228988395|ref|ZP_04148487.1| hypothetical protein bthur0001_50500 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229032787|ref|ZP_04188745.1| hypothetical protein bcere0028_48190 [Bacillus cereus AH1271] gi|229072618|ref|ZP_04205820.1| hypothetical protein bcere0025_47790 [Bacillus cereus F65185] gi|229082377|ref|ZP_04214840.1| hypothetical protein bcere0023_49940 [Bacillus cereus Rock4-2] gi|229112579|ref|ZP_04242116.1| hypothetical protein bcere0018_48190 [Bacillus cereus Rock1-15] gi|229147696|ref|ZP_04276039.1| hypothetical protein bcere0012_48210 [Bacillus cereus BDRD-ST24] gi|229181426|ref|ZP_04308754.1| hypothetical protein bcere0005_47670 [Bacillus cereus 172560W] gi|229193412|ref|ZP_04320360.1| hypothetical protein bcere0002_50560 [Bacillus cereus ATCC 10876] gi|218542202|gb|ACK94596.1| DNA-binding protein [Bacillus cereus G9842] gi|228590067|gb|EEK47938.1| hypothetical protein bcere0002_50560 [Bacillus cereus ATCC 10876] gi|228602001|gb|EEK59494.1| hypothetical protein bcere0005_47670 [Bacillus cereus 172560W] gi|228635709|gb|EEK92196.1| hypothetical protein bcere0012_48210 [Bacillus cereus BDRD-ST24] gi|228670959|gb|EEL26266.1| hypothetical protein bcere0018_48190 [Bacillus cereus Rock1-15] gi|228700809|gb|EEL53332.1| hypothetical protein bcere0023_49940 [Bacillus cereus Rock4-2] gi|228710594|gb|EEL62567.1| hypothetical protein bcere0025_47790 [Bacillus cereus F65185] gi|228728555|gb|EEL79573.1| hypothetical protein bcere0028_48190 [Bacillus cereus AH1271] gi|228771376|gb|EEM19850.1| hypothetical protein bthur0001_50500 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228798284|gb|EEM45283.1| hypothetical protein bthur0005_48430 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804201|gb|EEM50815.1| hypothetical protein bthur0006_47650 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835695|gb|EEM81059.1| hypothetical protein bthur0011_48700 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK N+ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|148994361|ref|ZP_01823604.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP9-BS68] gi|289168600|ref|YP_003446869.1| transcriptional regulator [Streptococcus mitis B6] gi|293364230|ref|ZP_06610956.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307702415|ref|ZP_07639371.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315611783|ref|ZP_07886705.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|322375921|ref|ZP_08050432.1| conserved domain protein [Streptococcus sp. C300] gi|147927292|gb|EDK78325.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP9-BS68] gi|288908167|emb|CBJ23009.1| transcriptional regulator [Streptococcus mitis B6] gi|291317076|gb|EFE57503.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307623997|gb|EFO02978.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315316198|gb|EFU64228.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|321279189|gb|EFX56231.1| conserved domain protein [Streptococcus sp. C300] Length = 64 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ L L + + ++ Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+ G+SQ+E K +G+ T++ E + P ++ + + + L+ +++ Sbjct: 1 MNRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFW 60 Query: 175 GDE 177 D+ Sbjct: 61 EDD 63 >gi|149001557|ref|ZP_01826530.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|149006084|ref|ZP_01829813.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP18-BS74] gi|168490030|ref|ZP_02714229.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|168494685|ref|ZP_02718828.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|182683306|ref|YP_001835053.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|221231212|ref|YP_002510364.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|237649376|ref|ZP_04523628.1| putative DNA-binding protein [Streptococcus pneumoniae CCRI 1974] gi|237821593|ref|ZP_04597438.1| putative DNA-binding protein [Streptococcus pneumoniae CCRI 1974M2] gi|298230655|ref|ZP_06964336.1| putative DNA-binding protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|147760015|gb|EDK67004.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|147762440|gb|EDK69401.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP18-BS74] gi|182628640|gb|ACB89588.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|183571579|gb|EDT92107.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|183575410|gb|EDT95938.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|220673672|emb|CAR68163.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|327390749|gb|EGE89089.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332075179|gb|EGI85649.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332076774|gb|EGI87236.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 64 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ RK +Q E+A +N+ EN + ++ L L + + ++ Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFWK 61 Query: 94 EVI 96 E Sbjct: 62 EDF 64 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+ G+SQ+E K +G+ T++ E + P ++ + + + L+ +++ Sbjct: 1 MNRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFW 60 Query: 175 GDE 177 ++ Sbjct: 61 KED 63 >gi|95930237|ref|ZP_01312975.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95133700|gb|EAT15361.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 188 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 IR + T +E+A G+ + ++ E G+ S+ + L + S D+ + Sbjct: 14 IRLGRDLTIQELANGSGVSSNMISRVERGLTIPSVEILMKLARVFNKSVDYFVE 67 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +IR + ++ E G+ ++ +S E+G TIP ++ K+ +V K +D+ +EV Sbjct: 13 AIRLGRDLTIQELANGSGVSSNMISRVERGLTIPSVEILMKLARVFNKSVDYFV--EEVK 70 Query: 180 VPKSIKRAKGNQSSKKSKKDKKSSN 204 + + Q +D SSN Sbjct: 71 TTHEVVFSSSGQRDATVYED--SSN 93 >gi|332637654|ref|ZP_08416517.1| hypothetical protein WcibK1_03097 [Weissella cibaria KACC 11862] Length = 70 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R TQKE+A + L E G + +++ A+ + + + + ++ + Sbjct: 5 VRKYRTLKGLTQKELANAIGVTRQTIALIEKGTYNPTMKLAIAIATQLDTDLNSLFLRQD 64 Query: 96 IDRRYE 101 D Sbjct: 65 TDETNY 70 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ R KG++Q E +G+ T++ E+G P +K A I L+ ++ Sbjct: 1 MNNSVRKYRTLKGLTQKELANAIGVTRQTIALIEKGTYNPTMKLAIAIATQLDTDLNSLF 60 Query: 174 FGDEV 178 + Sbjct: 61 LRQDT 65 >gi|326391550|ref|ZP_08213082.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992431|gb|EGD50891.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 427 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 1/103 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R N +Q E+ ++ ENG S+ YL + E+ + + Sbjct: 5 IGDKIKALRLQKNLSQSELCGNF-MSRVVLSRIENGKALPSLEQLAYLAEKLEVPVSYFF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 ++ N L + I K + F + Sbjct: 64 SDSTGEKYILFEKNSSLLKDLFLAKDYYEIIKWSEENHNAFCE 106 Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K++R K +SQ E M LS E G+ +P ++ + + + + + + Sbjct: 9 IKALRLQKNLSQSELCGNF-MSRVVLSRIENGKALPSLEQLAYLAEKLEVPVSYFFSD 65 >gi|312164184|gb|ADQ38323.1| transcriptional regulator [Azospirillum brasilense] Length = 75 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY--------LRNE 82 +VG R+K +R+A+ +Q+++A A ++L E CS S+ L Sbjct: 9 NVGARLKQVREAHALSQRQLAQRAGVTNGTISLIEQNRCSPSVSSLRKVLQGIPMTLAEF 68 Query: 83 YEISFDWI 90 + S D + Sbjct: 69 F--SSDDL 74 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +GARLK +R+ +SQ + + G+ N T+S EQ R P + RK+ Q L Sbjct: 8 FNVGARLKQVREAHALSQRQLAQRAGVTNGTISLIEQNRCSPSVSSLRKVLQGIPMTLAE 67 Query: 172 IYFGDE 177 + D+ Sbjct: 68 FFSSDD 73 >gi|304314800|ref|YP_003849947.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302588259|gb|ADL58634.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 190 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK +R N T +E+A + + E G S+ + + + + Sbjct: 6 VGERIKQLRDNQNITLEELAERSGVNRELIKKIEEGDILPSLTPLIKISRTLGVRLGTLL 65 Query: 92 DGEVIDRR 99 D V D Sbjct: 66 DDRVQDEP 73 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G R+K +R ++ ++ E + G+ + E+G +P + P KI + Sbjct: 1 MPANTVGERIKQLRDNQNITLEELAERSGVNRELIKKIEEGDILPSLTPLIKISRTLGVR 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + P +++ K + Sbjct: 61 LGTLLDDRVQDEPVIVRKGKTQRV 84 >gi|226948868|ref|YP_002803959.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843124|gb|ACO85790.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 370 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ+++A +AV+ +E+ I + + ++ D + Sbjct: 6 IGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETSYPDITLLPVIAIFFNVTIDTLL 65 Query: 92 D 92 + Sbjct: 66 N 66 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 35/76 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +IG + +RK+KG++Q + +G+ + +S +E + P+I I Sbjct: 1 MEKLSIGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETSYPDITLLPVIAIFFNVT 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + + Sbjct: 61 IDTLLNFKIELSDEEV 76 >gi|239815430|ref|YP_002944340.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239802007|gb|ACS19074.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 196 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 30/96 (31%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K +R TQK++A + +EN I L + ++ Sbjct: 1 MDSFASTFASNLKRLRTERFLTQKQLADAIRITTRTLIRWENAEGEPGISELRMLASFFD 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 I D + + + L + + Sbjct: 61 IGIDQLISDLLPPNDSGALARVADLACPLLDYWIAR 96 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 109 LDPYA--IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D +A + LK +R ++ ++Q + + + TL +E P I R + Sbjct: 1 MDSFASTFASNLKRLRTERFLTQKQLADAIRITTRTLIRWENAEGEPGISELRMLASFFD 60 Query: 167 KHLDWIYFG 175 +D + Sbjct: 61 IGIDQLISD 69 >gi|210608450|ref|ZP_03287826.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] gi|210153061|gb|EEA84067.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] Length = 157 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +++IRK +GM Q E +G+ +LS E+G P + KI +V Sbjct: 6 MKISHLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVT 65 Query: 169 LDWIYFGDEVIVPKSIKR 186 + + G+ V +S K Sbjct: 66 PNELLSGEWKYVNQSEKE 83 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK Q+E+A +++ E G+ + + +++ + + Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 Query: 92 DGE 94 GE Sbjct: 71 SGE 73 >gi|121535735|ref|ZP_01667538.1| transcriptional regulator, XRE family [Thermosinus carboxydivorans Nor1] gi|121305700|gb|EAX46639.1| transcriptional regulator, XRE family [Thermosinus carboxydivorans Nor1] Length = 110 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-FGD 176 ++ R G+SQ + ++G+ TL+ +E GR P + RKI DW+ + Sbjct: 8 IRQARHLAGLSQEKLADVVGVKRVTLAAWETGRNEPNSEHIRKIALACGVTTDWLLEMPE 67 Query: 177 EVIVPKSIKRAKGNQSSKKSKKDK 200 + + RA + ++ +DK Sbjct: 68 DFTGMANDARAIAEKIARLKPEDK 91 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 24/61 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I+ R +Q+++A + +E G + + + ++ DW+ Sbjct: 4 IADKIRQARHLAGLSQEKLADVVGVKRVTLAAWETGRNEPNSEHIRKIALACGVTTDWLL 63 Query: 92 D 92 + Sbjct: 64 E 64 >gi|317484142|ref|ZP_07943072.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924646|gb|EFV45802.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 108 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 21/60 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ + N +Q A S +N + + + N + + D++ Sbjct: 14 FGNRLRQLLDERNISQAHFADRIGVSRSRMNNYVAQRSEPDYATLIRIANTLDTTIDFLL 73 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G RL+ + ++ +SQ F +G+ S ++NY R+ P+ +I +D++ Sbjct: 14 FGNRLRQLLDERNISQAHFADRIGVSRSRMNNYVAQRSEPDYATLIRIANTLDTTIDFLL 73 Query: 174 FGDE 177 E Sbjct: 74 GKSE 77 >gi|294636506|ref|ZP_06714875.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Edwardsiella tarda ATCC 23685] gi|291090252|gb|EFE22813.1| prophage LambdaSo, transcriptional regulator, Cro/CI family [Edwardsiella tarda ATCC 23685] Length = 69 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE-----ISFD 88 RI++IRK TQ+++A A A+ +E G + SI + + +S D Sbjct: 2 NRIREIRKQLGLTQRKLASLAGCTPGAIGHYELGRRAMSITVCQKIVLIFNQLGASVSLD 61 Query: 89 WIYD 92 ++ Sbjct: 62 DVFP 65 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK-----KHL 169 R++ IRK G++Q + L G + +YE GR I +KI + L Sbjct: 1 MNRIREIRKQLGLTQRKLASLAGCTPGAIGHYELGRRAMSITVCQKIVLIFNQLGASVSL 60 Query: 170 DWIY 173 D ++ Sbjct: 61 DDVF 64 >gi|270157300|ref|ZP_06185957.1| putative transcriptional regulator [Legionella longbeachae D-4968] gi|289164315|ref|YP_003454453.1| DNA-binding transcriptional regulator [Legionella longbeachae NSW150] gi|269989325|gb|EEZ95579.1| putative transcriptional regulator [Legionella longbeachae D-4968] gi|288857488|emb|CBJ11320.1| putative DNA-binding transcriptional regulator [Legionella longbeachae NSW150] Length = 187 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 9/95 (9%), Positives = 32/95 (33%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ K + +K +R+ + A+ ++ + E S +I + + ++ Sbjct: 1 MQEISKRIAKTLKSLRQERGWSLDRTALETGVSKAMLGQIEREESSPTIATLWKIASGFQ 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 SF + + + +++ Sbjct: 61 TSFSSFIEDTLDSSANPIHRIGNAQTLHPADQKIR 95 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LKS+R+++G S G+ + L E+ + P I KI + Sbjct: 10 KTLKSLRQERGWSLDRTALETGVSKAMLGQIEREESSPTIATLWKIASGFQTSFSSFI 67 >gi|256396415|ref|YP_003117979.1| hypothetical protein Caci_7309 [Catenulispora acidiphila DSM 44928] gi|256362641|gb|ACU76138.1| protein of unknown function DUF955 [Catenulispora acidiphila DSM 44928] Length = 283 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 4/97 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQ--LESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +VG RI+ R +Q E+A +A++ +E+G S + + L + Sbjct: 7 EVGQRIRAARTRRGWSQAELAARLAGQPTPTAISYWESGRRSVGLDDLIELARVLGLGIS 66 Query: 89 WIY--DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + E +++D + +L++ K Sbjct: 67 ELLPDPREQRPVGALLRAVAEQVDAQQLAEQLEAFAK 103 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLL--GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ R +G SQ E L + +S +E GR + ++ +V + + Sbjct: 10 QRIRAARTRRGWSQAELAARLAGQPTPTAISYWESGRRSVGLDDLIELARVLGLGISELL 69 Query: 174 FGDEVIVP 181 P Sbjct: 70 PDPREQRP 77 >gi|240851449|ref|YP_002972836.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268572|gb|ACS52159.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 118 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ RK +Q+++ + +ENG + N ++ + Sbjct: 13 VGKKIRCRRKYMGISQEKLGKKIGVSFQQIQKYENGSNRVGAGRLQEIANILDVDIS-FF 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++ ++R + L + LK RK K Q Sbjct: 72 YTDISEKRNISYPYNEGLHSKEEYSLLKGFRKLKHKKQKAI 112 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ ++G +++ RK G+SQ + GK +G+ + YE G ++I Sbjct: 1 MQNKTPHLNDISVGKKIRCRRKYMGISQEKLGKKIGVSFQQIQKYENGSNRVGAGRLQEI 60 Query: 162 KQVTKKHLDWIYFG 175 + + + Y Sbjct: 61 ANILDVDISFFYTD 74 >gi|227823870|ref|YP_002827843.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227342872|gb|ACP27090.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 125 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G ++++R+ +QKEMA + ++ E+G + S + + + + +D Sbjct: 4 FGEAMRELRRRKGVSQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNVIWDE 62 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 G ++ +R+ KG+SQ E +G+ + LS E G+ P +++ Sbjct: 1 MTPFGEAMRELRRRKGVSQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNVIW 60 Query: 168 -HLDWIYFGDEVIVPKSIKRAKG 189 D ++ + P+ + G Sbjct: 61 DEADELFRVARLSDPRVVLDTSG 83 >gi|154498814|ref|ZP_02037192.1| hypothetical protein BACCAP_02805 [Bacteroides capillosus ATCC 29799] gi|150272204|gb|EDM99408.1| hypothetical protein BACCAP_02805 [Bacteroides capillosus ATCC 29799] Length = 198 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 1/86 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++ R++ TQKE+ + ++ EN S+R YL + Sbjct: 3 LGQKIREARQSKGMTQKELVGDY-ITRNMLSKIENDSAIPSVRTLEYLAGALGFPTGYFL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 G + + Y Sbjct: 62 SGAPVSDGTAPDGLDEARAAYREHRW 87 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +G +++ R+ KGM+Q +L+G + + LS E IP ++ + Sbjct: 1 MTLGQKIREARQSKGMTQK---ELVGDYITRNMLSKIENDSAIPSVRTLEYLAGALGFPT 57 Query: 170 DWIYFG 175 + G Sbjct: 58 GYFLSG 63 >gi|163942747|ref|YP_001647631.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864944|gb|ABY46003.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 73 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+++ R + +Q ++ ++L E G + SI +L + + + I+ Sbjct: 5 NRVREFRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFGAPVEEIFT 63 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ R +SQ + GK +G T+S E+G P I + KI Q+ ++ Sbjct: 1 MKLQNRVREFRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFGAPVEE 60 Query: 172 IYF 174 I+ Sbjct: 61 IFT 63 >gi|75762636|ref|ZP_00742481.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895748|ref|YP_002444159.1| DNA-binding protein [Bacillus cereus G9842] gi|228899378|ref|ZP_04063640.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] gi|228963794|ref|ZP_04124935.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|74489883|gb|EAO53254.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542527|gb|ACK94921.1| DNA-binding protein [Bacillus cereus G9842] gi|228795939|gb|EEM43406.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228860284|gb|EEN04682.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] Length = 66 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R + TQ+++A ++L E G + S+ L + + + + ++ Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNELFWE 63 Query: 94 EVI 96 E Sbjct: 64 EKE 66 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R ++Q + + +G+ T+S E+G+ P + KI K L+ + Sbjct: 1 MAVSKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNEL 60 Query: 173 YFGDEV 178 ++ ++ Sbjct: 61 FWEEKE 66 >gi|319652442|ref|ZP_08006558.1| hypothetical protein HMPREF1013_03171 [Bacillus sp. 2_A_57_CT2] gi|317395904|gb|EFV76626.1| hypothetical protein HMPREF1013_03171 [Bacillus sp. 2_A_57_CT2] Length = 181 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 31/73 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++ +IKD+R T KE++ S ++ E G S +I + + + Sbjct: 1 MEEIYKKIKDLRLQKGYTLKELSERTELSISFLSQVERGATSLAITSLKKIADALNVKIS 60 Query: 89 WIYDGEVIDRRYE 101 ++ E ++ + Sbjct: 61 EFFEDETPNQNFM 73 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I ++K +R KG + E + + S LS E+G T I +KI + Sbjct: 1 MEEIYKKIKDLRLQKGYTLKELSERTELSISFLSQVERGATSLAITSLKKIADALNVKIS 60 Query: 171 WIYFGD 176 + + Sbjct: 61 EFFEDE 66 >gi|300173314|ref|YP_003772480.1| transcriptional activator [Leuconostoc gasicomitatum LMG 18811] gi|299887693|emb|CBL91661.1| transcriptional activator [Leuconostoc gasicomitatum LMG 18811] Length = 280 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I+ RK+ +QKE+ +S ++ ENG+ S + R + + + +D Sbjct: 9 IRKTRKSRGISQKELGQLIG-SQSMISRIENGLTSPTDRALQQICDILNVPIVDYFDTVF 67 Query: 96 IDRRYEDVTNKKRLDPYAIGARLK 119 + + + Y ++K Sbjct: 68 DKKNNLSLLKSELEQAYLDQNKIK 91 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL-D 170 A ++ RK +G+SQ E G+L+G S +S E G T P + ++I + + D Sbjct: 3 IQSNAIIRKTRKSRGISQKELGQLIG-SQSMISRIENGLTSPTDRALQQICDILNVPIVD 61 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + S+ +++ Q+ K K Sbjct: 62 YFDTVFDKKNNLSLLKSELEQAYLDQNKIK 91 >gi|291453422|ref|ZP_06592812.1| DNA-binding protein [Streptomyces albus J1074] gi|291356371|gb|EFE83273.1| DNA-binding protein [Streptomyces albus J1074] Length = 289 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +++A +S ++ ENG S S R L YE+ Sbjct: 15 RRRLGQELRRLRELKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDH 74 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 75 RIVDSLM--QMAKDSRQQGWWHSFGD 98 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ KGM+ + + L + S +S E GR + R + V + Sbjct: 20 QELRRLRELKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 71 >gi|323342820|ref|ZP_08083052.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463932|gb|EFY09126.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 68 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I ++ R+ G +Q F + +G+ T+ E+G P ++ A K V LD + Sbjct: 1 MILNHIRDKREALGYTQQFFAEQVGVSRQTVIALEKGSYNPSLELAFKCSIVLNCTLDGL 60 Query: 173 YFGDE 177 + +E Sbjct: 61 FQYEE 65 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 22/64 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I+D R+A TQ+ A V E G + S+ A + D ++ Sbjct: 4 NHIRDKREALGYTQQFFAEQVGVSRQTVIALEKGSYNPSLELAFKCSIVLNCTLDGLFQY 63 Query: 94 EVID 97 E Sbjct: 64 EEKP 67 >gi|254557506|ref|YP_003063923.1| transcription regulator [Lactobacillus plantarum JDM1] gi|254046433|gb|ACT63226.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 303 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 11/142 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G I IR + TQ+E+ G S + FE+G + + IS D Sbjct: 1 MTNIGETIHQIRLSKGLTQQEVYSGI-ISRSFASRFESGANDIGASKLFAILDNLAISAD 59 Query: 89 WI-YDGEVIDRRYEDVT------NKKRLDPYAIGARLKSIRK-DKGMSQ--IEFGKLLGM 138 + + + D + L+ A+ ++ R Q + +L + Sbjct: 60 ELRFIHQNYQPSAYDQALWTIRHAYETLNFPALATWIREHRHSPHAYEQLIASYASILML 119 Query: 139 PNSTLSNYEQGRTIPEIKPARK 160 S T P R+ Sbjct: 120 SYDHRSVGVTTTTQPAFDHLRQ 141 >gi|254419648|ref|ZP_05033372.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196185825|gb|EDX80801.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 139 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R+ + R+A +Q ++A A + +E G + + + ++ + Sbjct: 21 VGRRVAERRQALRYSQAQLAQAAGVTFQQIQKYERGSNRIAASRLWEIAEFLNVDLNYFF 80 Query: 92 DG 93 +G Sbjct: 81 EG 82 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 + N +D +G R+ R+ SQ + + G+ + YE+G Sbjct: 7 KTPQGDNLNPVD-LHVGRRVAERRQALRYSQAQLAQAAGVTFQQIQKYERGSNRIAASRL 65 Query: 159 RKIKQVTKKHLDWIYFG 175 +I + L++ + G Sbjct: 66 WEIAEFLNVDLNYFFEG 82 >gi|254384422|ref|ZP_04999764.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1] gi|194343309|gb|EDX24275.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1] Length = 462 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G+RI+ +R+ +Q ++A N S ++L E G + S + + Sbjct: 5 QTLGSRIRRLRREAGLSQMDLAGE-NLSPSYISLLEAGKRTPSPEVLEQIAARLGCAPGQ 63 Query: 90 IYDGEVIDRRYEDVTNKKR 108 + + +R T+ + Sbjct: 64 LLELLAPERHDTLQTDLRY 82 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R++ +R++ G+SQ++ + S +S E G+ P + +I + Sbjct: 9 SRIRRLRREAGLSQMDLAGE-NLSPSYISLLEAGKRTPSPEVLEQIAARLGCAPGQLL-- 65 Query: 176 DEVIVPKS 183 E++ P+ Sbjct: 66 -ELLAPER 72 >gi|153812486|ref|ZP_01965154.1| hypothetical protein RUMOBE_02885 [Ruminococcus obeum ATCC 29174] gi|149831411|gb|EDM86499.1| hypothetical protein RUMOBE_02885 [Ruminococcus obeum ATCC 29174] Length = 70 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ TQK++ N A+N E G S+ A + + +S + +++ Sbjct: 5 NRVKELREKEGLTQKKLGEKVNVSRQAINAIETGKYDPSLWLAYDIAQLFNMSIEEVFNF 64 Query: 94 EVIDRR 99 + +R+ Sbjct: 65 KESERK 70 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 33/70 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K +R+ +G++Q + G+ + + ++ E G+ P + A I Q+ ++ Sbjct: 1 MILKNRVKELREKEGLTQKKLGEKVNVSRQAINAIETGKYDPSLWLAYDIAQLFNMSIEE 60 Query: 172 IYFGDEVIVP 181 ++ E Sbjct: 61 VFNFKESERK 70 >gi|90419571|ref|ZP_01227481.1| putative transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336508|gb|EAS50249.1| putative transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 167 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 6/104 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R++ T E+A + +E + L +S W+ Sbjct: 61 MGGRIQRGRESLGITTAELAARLGVKPETMRGWERDRSEPRANRLITLSGILGVSPAWLL 120 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 G Y +V + LD + ARL ++R + + E +L Sbjct: 121 GG------YGEVPDTVDLDENGMAARLDNLRARRDVLDREIARL 158 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 +T+ ++D +G R++ R+ G++ E LG+ T+ +E+ R+ P + Sbjct: 49 PMTDIMQMDGDTMGGRIQRGRESLGITTAELAARLGVKPETMRGWERDRSEPRANRLITL 108 Query: 162 KQVTKKHLDWIYFG 175 + W+ G Sbjct: 109 SGILGVSPAWLLGG 122 >gi|56417165|ref|YP_154239.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries] gi|255004638|ref|ZP_05279439.1| hypothetical protein AmarV_05075 [Anaplasma marginale str. Virginia] gi|23168718|gb|AAN08687.1| transcriptional regulator [Anaplasma marginale str. South Idaho] gi|23168730|gb|AAN08693.1| transcriptional regulator [Anaplasma marginale] gi|23168742|gb|AAN08699.1| transcriptional regulator [Anaplasma marginale] gi|23168754|gb|AAN08705.1| transcriptional regulator [Anaplasma marginale] gi|23168766|gb|AAN08711.1| transcriptional regulator [Anaplasma marginale str. Washington Okanogan] gi|56388397|gb|AAV86984.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries] Length = 187 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 2/100 (2%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKD--VGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 F+ + ++ +I+ + R + D VG IK R +Q ++A V Sbjct: 2 FMTSRTQNQSSIPIIVEGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQK 61 Query: 64 FENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 +E G I L I + D R Sbjct: 62 YEKGTNRIVISRLYELARVLGIEIKDLIAKLQNDLRPITD 101 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R KGMSQ + LG+ + YE+G I ++ +V + + Sbjct: 34 IKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89 >gi|83951709|ref|ZP_00960441.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM] gi|83836715|gb|EAP76012.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM] Length = 219 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 32/84 (38%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q+ I + R +G ++ +R++ T +++ ++ ENG S S+ Sbjct: 15 QDPHKITPNKERVLEVAIGREVRSLRQSQRMTVTDLSEATGLSPGMLSKIENGGTSASLT 74 Query: 75 YALYLRNEYEISFDWIYDGEVIDR 98 + L + + ++R Sbjct: 75 TLVTLARALSVPITDFFKTYEVER 98 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 ++ NK+R+ AIG ++S+R+ + M+ + + G+ LS E G T + Sbjct: 16 DPHKITPNKERVLEVAIGREVRSLRQSQRMTVTDLSEATGLSPGMLSKIENGGTSASLTT 75 Query: 158 ARKIKQVTKKHL-DWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + + D+ + +K +G ++ ++ + Sbjct: 76 LVTLARALSVPITDFFKTYEVERGAVHVKAGEGVETVREGTR 117 >gi|299136447|ref|ZP_07029630.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298600962|gb|EFI57117.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 137 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 27/79 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I+D R +Q ++ L ++ ENG S+ + ++ Sbjct: 22 NIGMTIRDFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAAALDLPLSQF 81 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + + + + + Sbjct: 82 FAEDSVKDVPGISLKEDEI 100 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R KGMSQ + K G+ LS E G T+P ++ +KI L + Sbjct: 25 MTIRDFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAAALDLPLSQFFAE 84 Query: 176 DEV 178 D V Sbjct: 85 DSV 87 >gi|296268292|ref|YP_003650924.1| helix-turn-helix domain-containing protein [Thermobispora bispora DSM 43833] gi|296091079|gb|ADG87031.1| helix-turn-helix domain protein [Thermobispora bispora DSM 43833] Length = 370 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 11/109 (10%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 W+++G R++ R A +Q ++A + + + E G L ++ Sbjct: 12 WQEIGERVRQARLAKGLSQLQLAQKVDLDRTMITKIEAGSRRLDALELARLAQALDVPIG 71 Query: 89 WIYDGEV----------IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 D + RLD A+ A ++ IR + Sbjct: 72 HFLHPAPEVLSHRTPLAEDTATDASQPYYRLDN-ALAAWIRDIRLLMDL 119 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 28/70 (40%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 LD IG R++ R KG+SQ++ + + + + ++ E G + ++ Q Sbjct: 5 RTMSSLDWQEIGERVRQARLAKGLSQLQLAQKVDLDRTMITKIEAGSRRLDALELARLAQ 64 Query: 164 VTKKHLDWIY 173 + Sbjct: 65 ALDVPIGHFL 74 >gi|260427903|ref|ZP_05781882.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260422395|gb|EEX15646.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 131 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 3/120 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G RI R+A Q+++A + +EN + L +S W+ Sbjct: 15 FGDRIAAAREAAGMGQEKLARRLGVKLKTLQGWENDLSEPRANRLQMLAGLLNVSMGWLL 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 GE T P + L IR K Q G LG TL + Sbjct: 75 TGEGEGLSGPGDTEPAL--PADVNEALLEIRALKTEIQT-AGDRLGRLEKTLRRLLKDEA 131 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G R+ + R+ GM Q + + LG+ TL +E + P + + + + Sbjct: 11 DAATFGDRIAAAREAAGMGQEKLARRLGVKLKTLQGWENDLSEPRANRLQMLAGLLNVSM 70 Query: 170 DWIYFGD 176 W+ G+ Sbjct: 71 GWLLTGE 77 >gi|320010212|gb|ADW05062.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 285 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE++ Sbjct: 11 RRRLGQELRRLREIKGMTAEEVADRLLVSQSKISRLENGRRSISQRDVRDLCGVYEVADH 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RVVDSLM--QMAKDSRQQGWWHAFGD 94 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ KGM+ E L + S +S E GR + R + V + Sbjct: 16 QELRRLREIKGMTAEEVADRLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 >gi|228978563|ref|ZP_04138938.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228781162|gb|EEM29365.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] Length = 114 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 25/70 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K R ++ TQ E+ S ++ EN + + + + +S D + Sbjct: 4 FGENLKKFRNSHTLTQAELGNKIQLSRSQISNLENHFNEPDLDSLDRIASFFNVSIDALL 63 Query: 92 DGEVIDRRYE 101 + + Sbjct: 64 GRNIPESEER 73 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK R ++Q E G + + S +SN E P++ +I +D Sbjct: 1 MNTFGENLKKFRNSHTLTQAELGNKIQLSRSQISNLENHFNEPDLDSLDRIASFFNVSID 60 Query: 171 WIYFGDEVIVPKSIK 185 + + + +K Sbjct: 61 ALLGRNIPESEERLK 75 >gi|114705572|ref|ZP_01438475.1| hypothetical protein FP2506_13939 [Fulvimarina pelagi HTCC2506] gi|114538418|gb|EAU41539.1| hypothetical protein FP2506_13939 [Fulvimarina pelagi HTCC2506] Length = 497 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ IR + TQ MA G S +NL E +++ L L Y++ + Sbjct: 9 GPRIRSIRHGLSLTQTAMAEGLGISPSYLNLIERNQRPLTVQLLLRLSETYKVDLADLRG 68 Query: 93 GEVI 96 E Sbjct: 69 SEDK 72 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++SIR ++Q + LG+ S L+ E+ + ++ ++ + K L + ++ Sbjct: 12 IRSIRHGLSLTQTAMAEGLGISPSYLNLIERNQRPLTVQLLLRLSETYKVDLADLRGSED 71 Query: 178 VIV 180 I+ Sbjct: 72 KIL 74 >gi|83719403|ref|YP_440667.1| XRE family transcriptional regulator [Burkholderia thailandensis E264] gi|83653228|gb|ABC37291.1| possible transcriptional regulator, XRE family [Burkholderia thailandensis E264] Length = 128 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R K+Q+ +A A+ + ++ E G+ + S+ + I+ ++ Sbjct: 39 LGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGIANPSVETLANICYSLNITLAELF 98 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +R A +K R Sbjct: 99 ---APLDGVSLKPTGERRANAATPPEIKRSR 126 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 30/83 (36%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 ++ +R + A+G R+K R + SQ + + +S+ E+G Sbjct: 16 ILHDMTVKRSPSPPGRPAPISIALGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGI 75 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 P ++ I L ++ Sbjct: 76 ANPSVETLANICYSLNITLAELF 98 >gi|296284051|ref|ZP_06862049.1| XRE family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + +Q E+A + AVN E G S+ A + +++ + I+ Sbjct: 3 NRLKVLRAERDWSQAELAGRLDVSRQAVNAIETGKHDPSLGLAFKISRVFDMPIETIFLE 62 Query: 94 EVI 96 E Sbjct: 63 EED 65 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ SQ E L + ++ E G+ P + A KI +V ++ I+ Sbjct: 1 MKNRLKVLRAERDWSQAELAGRLDVSRQAVNAIETGKHDPSLGLAFKISRVFDMPIETIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 LEEED 65 >gi|260583479|ref|ZP_05851227.1| repressor protein [Granulicatella elegans ATCC 700633] gi|260158105|gb|EEW93173.1| repressor protein [Granulicatella elegans ATCC 700633] Length = 227 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K+IR +Q +A A + +ENG + + + L + + + + Sbjct: 5 NRLKEIRTQQGYSQSFIAKQLEISRVAYHHWENGKTIPNQKNLIALADIFNVEASYF 61 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK IR +G SQ K L + ++E G+TIP K + + + Sbjct: 1 MFSANRLKEIRTQQGYSQSFIAKQLEISRVAYHHWENGKTIPNQKNLIALADIFNVEASY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + + IV ++ NQ + Sbjct: 61 -FESEYTIVTNYLQLHSNNQKKAE 83 >gi|222147026|ref|YP_002547983.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734016|gb|ACM34979.1| transcriptional regulator [Agrobacterium vitis S4] Length = 131 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G ++ +R+ +QK+MA + ++ E+G S + + I +D Sbjct: 4 FGDAVRGLRERKGVSQKDMAKAIGVTPAYLSALEHGRRGKPSFDLLQRIAGYFNIIWDE 62 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK---HLDWIY 173 ++ +R+ KG+SQ + K +G+ + LS E GR P ++I D ++ Sbjct: 8 VRGLRERKGVSQKDMAKAIGVTPAYLSALEHGRRGKPSFDLLQRIAGYFNIIWDEADDLF 67 >gi|218675040|ref|ZP_03524709.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 180 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 41/122 (33%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 ++ + TS + + + + + + VG +I+ R +N + ++ G V Sbjct: 23 YVAAQVRTSRPAQAKQSDVARESVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQV 82 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +E+G S L N +I ++G + +D Sbjct: 83 QKYESGKNRVSASMLYELANCLKIPVSRFFEGLPDPETTQGQQFITEIDGKIAYISTAEG 142 Query: 122 RK 123 R+ Sbjct: 143 RR 144 Score = 42.2 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ R +S + G +G+ + YE G+ ++ K + + G Sbjct: 55 QQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEG 114 >gi|86651824|gb|ABD14429.1| transcriptional regulator [Anaplasma centrale] Length = 187 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 2/101 (1%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKD--VGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 F+ + ++ +I+ + R + D VG IK R +Q ++A V Sbjct: 2 FMTSRTQNQSSIPIIVGGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQK 61 Query: 64 FENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 +E G I L I + D R T Sbjct: 62 YEKGTNRIVISRLYELARVLGIEIKDLISKLQNDLRSITDT 102 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R KGMSQ + LG+ + YE+G I ++ +V + + Sbjct: 34 IKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89 >gi|52786374|ref|YP_092203.1| SinR [Bacillus licheniformis ATCC 14580] gi|319645045|ref|ZP_07999278.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2] gi|52348876|gb|AAU41510.1| SinR [Bacillus licheniformis ATCC 14580] gi|317392854|gb|EFV73648.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2] Length = 113 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 4/101 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK RK + E+A A +S ++ E + SI++ + ++S + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 91 YDGEV---IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + D + + D A G K R+ Sbjct: 64 LDEKDETEYDGQLDSEWENLVRDAMASGVSKKQFREFLDYQ 104 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+KG S E + G+ S LS+ E+ +T P I+ K+ V + + Sbjct: 6 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD 65 Query: 175 GDEVIV 180 + Sbjct: 66 EKDETE 71 >gi|327401729|ref|YP_004342568.1| XRE family transcriptional regulator [Archaeoglobus veneficus SNP6] gi|327317237|gb|AEA47853.1| transcriptional regulator, XRE family [Archaeoglobus veneficus SNP6] Length = 68 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R ++ TQ+E+A + E G S+ A + +++ + I+ Sbjct: 3 NKLKVYRAIHDLTQEELAKKLGVTRQTIIAIEKGKYDPSLELAFKIARFFKVKIEDIFIY 62 Query: 94 EVIDRR 99 E ++ Sbjct: 63 EEDEQD 68 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R ++Q E K LG+ T+ E+G+ P ++ A KI + K ++ I+ Sbjct: 1 MKNKLKVYRAIHDLTQEELAKKLGVTRQTIIAIEKGKYDPSLELAFKIARFFKVKIEDIF 60 Query: 174 FGDEVIVP 181 +E Sbjct: 61 IYEEDEQD 68 >gi|327398295|ref|YP_004339164.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM 10411] gi|327180924|gb|AEA33105.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM 10411] Length = 182 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 36/88 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG++I++IR N T ++++ + ++ E + S +I + + I+ ++ Sbjct: 3 VGSKIREIRTKKNMTLRDLSKKSGCSLGFLSQVERDLVSPTISSLRRIADALGINIISLF 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + V R +R+K Sbjct: 63 EEREPPVDSIVVRKTNRGKFENRRSRVK 90 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G++++ IR K M+ + K G LS E+ P I R+I ++ Sbjct: 1 MRVGSKIREIRTKKNMTLRDLSKKSGCSLGFLSQVERDLVSPTISSLRRIADALGINIIS 60 Query: 172 IYFGDEVIVPKSIKRA--KGNQSSKKSK 197 ++ E V + R +G +++S+ Sbjct: 61 LFEEREPPVDSIVVRKTNRGKFENRRSR 88 >gi|326388802|ref|ZP_08210386.1| conserved domain protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206712|gb|EGD57545.1| conserved domain protein [Novosphingobium nitrogenifigens DSM 19370] Length = 395 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 25/76 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R+ + RKA + ++A +++ +EN S + L + D+ Sbjct: 9 VGARLTEARKARGISATDLADMVGVSVQSISKYENDRQSPKLDVVHNLAATLKFPHDYFL 68 Query: 92 DGEVIDRRYEDVTNKK 107 + Sbjct: 69 RPTPERDERPIFWRAR 84 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +GARL RK +G+S + ++G+ ++S YE R P++ + K D+ Sbjct: 8 FVGARLTEARKARGISATDLADMVGVSVQSISKYENDRQSPKLDVVHNLAATLKFPHDYF 67 Query: 173 YFGDEVIVPKSI 184 + I Sbjct: 68 LRPTPERDERPI 79 >gi|325846548|ref|ZP_08169463.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481306|gb|EGC84347.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK+ G+ Q + K LG+ T+ E + P ++ A KI K ++ I+ Sbjct: 1 MNNIIKKLRKENGLRQEDLAKKLGVSRQTIIAIENNKYDPSLELAIKISIFFDKTVNDIF 60 Query: 174 FGD 176 + Sbjct: 61 LFE 63 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK +RK N Q+++A + EN S+ A+ + ++ + + I+ E Sbjct: 5 IKKLRKENGLRQEDLAKKLGVSRQTIIAIENNKYDPSLELAIKISIFFDKTVNDIFLFEN 64 Query: 96 I 96 Sbjct: 65 K 65 >gi|300310419|ref|YP_003774511.1| Cro/CI family transcription regulator [Herbaspirillum seropedicae SmR1] gi|300073204|gb|ADJ62603.1| Cro/CI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 152 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P + K VG RIK R A +Q++ A L + + E G C R + + Sbjct: 15 PAMNASKKAVGQRIKRARLAIGFSQRKFATVLGTLPNHICQIEQGRCMPGSRLLHGMHVQ 74 Query: 83 YEISFDWIYDGEVIDRRYEDVT 104 + I +W+ G+ R Sbjct: 75 FNIDINWLLTGQHQPFRLNSQE 96 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R+K R G SQ +F +LG + + EQGR +P + + ++W+ Sbjct: 23 AVGQRIKRARLAIGFSQRKFATVLGTLPNHICQIEQGRCMPGSRLLHGMHVQFNIDINWL 82 Query: 173 YFG 175 G Sbjct: 83 LTG 85 >gi|296503848|ref|YP_003665548.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296324900|gb|ADH07828.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 67 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK+ R N TQ+++A ++ E G + S++ A + + D I+ E Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDEIFIFE 65 Query: 95 VI 96 Sbjct: 66 DK 67 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+S+ E+G+ P ++ A I + +D Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDE 60 Query: 172 IYFGDE 177 I+ ++ Sbjct: 61 IFIFED 66 >gi|260432963|ref|ZP_05786934.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416791|gb|EEX10050.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 123 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 23/134 (17%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ R TQ+++A + +E G S + ++ + + Sbjct: 9 VGKRVRHRRWLIGMTQQQLAQQVGIKFQQIQKYETGANRISASRLWDIAEALDVPVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +G ++ + D + L + S + E R Sbjct: 69 EGLEETQKADSDKQSVPADLMGDK------------------EALDLVRSYYAIPENQRR 110 Query: 152 IPEIKPARKIKQVT 165 ++ +V Sbjct: 111 R-----LFELARVL 119 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 3/71 (4%) Query: 119 KSIRKDK---GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 K +R + GM+Q + + +G+ + YE G I + + + + G Sbjct: 11 KRVRHRRWLIGMTQQQLAQQVGIKFQQIQKYETGANRISASRLWDIAEALDVPVSFFFEG 70 Query: 176 DEVIVPKSIKR 186 E + Sbjct: 71 LEETQKADSDK 81 >gi|239930441|ref|ZP_04687394.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291438799|ref|ZP_06578189.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291341694|gb|EFE68650.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 191 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 8 NLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R++ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 11 EYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 68 >gi|262197947|ref|YP_003269156.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081294|gb|ACY17263.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 187 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 T R + +K +R+A +Q ++A A + E G + ++ L Sbjct: 3 TSPTRDTGAHLAHNVKQLREARGMSQAQIAKLAGIPRPTWSTLERGDGNPTLSVLLRAAA 62 Query: 82 EYEISFDWIY 91 ++S + + Sbjct: 63 ALQVSLEELV 72 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K +R+ +GMSQ + KL G+P T S E+G P + + + L+ + Sbjct: 15 HNVKQLREARGMSQAQIAKLAGIPRPTWSTLERGDGNPTLSVLLRAAAALQVSLEELV 72 >gi|239624744|ref|ZP_04667775.1| DNA-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239521130|gb|EEQ60996.1| DNA-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++D R + + +E+A + S ++ E + + SI + ++ Sbjct: 5 NLGKKVQDFRNKSGMSLRELAKRSGLTASMLSQIERDLVNPSIGTLKAIAQALDVPMFKF 64 Query: 91 YDGEVI 96 + + Sbjct: 65 FKDDEP 70 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G +++ R GMS E K G+ S LS E+ P I + I Q Sbjct: 1 MEDINLGKKVQDFRNKSGMSLRELAKRSGLTASMLSQIERDLVNPSIGTLKAIAQALDVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKG 189 + + DE V ++R + Sbjct: 61 MFKFFKDDEPQVQMIVRRGEN 81 >gi|163814881|ref|ZP_02206269.1| hypothetical protein COPEUT_01032 [Coprococcus eutactus ATCC 27759] gi|158449820|gb|EDP26815.1| hypothetical protein COPEUT_01032 [Coprococcus eutactus ATCC 27759] Length = 136 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R+ ++ +QK +A ++ +E + IR+ +YL Y +S D+I Sbjct: 14 QRIRGLREDHDYSQKYVADYLCTSQTMYARYERDASAMPIRHLIYLAKLYNVSTDYILGL 73 Query: 94 EVIDRRYEDVTNKK 107 + Y ++ + + Sbjct: 74 TDMPSSYNELASAE 87 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 7/103 (6%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D R++ +R+D SQ L + + YE+ + I+ + ++ Sbjct: 8 DDKKYIQRIRGLREDHDYSQKYVADYLCTSQTMYARYERDASAMPIRHLIYLAKLYNVST 67 Query: 170 DWIY-------FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D+I +E+ ++ K S+ S + K S NP Sbjct: 68 DYILGLTDMPSSYNELASAETAVSQKSCSDSRYSIRWKTSDNP 110 >gi|197119757|ref|YP_002140184.1| helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197089117|gb|ACH40388.1| helix-turn-helix transcriptional regulator with cupin domain [Geobacter bemidjiensis Bem] Length = 199 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/89 (11%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 21 ITPEIRQYWKD--VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + +I+Q ++ +G +++ +R+ T + +A + ++ EN + I L Sbjct: 1 MQEKIKQEIREMKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLK 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 + ++ + ++ +++ ++ Sbjct: 61 IAKGLKVGIHYFFEEAGDRQKFMLTRGEQ 89 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + +G +++ +R+++ ++ + G+ LS E + P I KI + Sbjct: 6 KQEIREMKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLKIAKGL 65 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 K + + + +E + +G QS S++ N Sbjct: 66 KVGIHYFF--EEAGDRQKFMLTRGEQSPLGSQRRPGKEN 102 >gi|124010375|ref|ZP_01695021.1| transcriptional regulator [Microscilla marina ATCC 23134] gi|123983542|gb|EAY24007.1| transcriptional regulator [Microscilla marina ATCC 23134] Length = 121 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +I+ +R+A +QKE+A+ N +S + E G + + + + Sbjct: 2 DIGDKIRKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNVEVAEL 61 Query: 91 YDGEV 95 + + Sbjct: 62 FTSDK 66 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R+ K +SQ E L M S S E+G+T P KI + + Sbjct: 1 MDIGDKIRKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNVEVAE 60 Query: 172 IYFGDEVIVP 181 ++ D++ Sbjct: 61 LFTSDKIFKD 70 >gi|186472719|ref|YP_001860061.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195051|gb|ACC73015.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 210 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R A++ T + + S ++ ENG+ S + + +I + Sbjct: 15 DLGRRVRAARLAHDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVVGLKIDLGEL 74 Query: 91 Y 91 + Sbjct: 75 F 75 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ R ++ +L G+ STLS E G P +KI K L ++ Sbjct: 18 RRVRAARLAHDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVVGLKIDLGELF 75 >gi|42520477|ref|NP_966392.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630365|ref|YP_002727156.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630759|ref|YP_002727550.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|42410216|gb|AAS14326.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592346|gb|ACN95365.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592740|gb|ACN95759.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 303 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 41/141 (29%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + +G +IK+ R TQK++A + ++ +E G + + + Sbjct: 152 VEEKTGSIYYQIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIA 211 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 IS + E E K ++ K S + + Sbjct: 212 ETLSISITDLLIEEDEIVESELPDLIKEYKKIESQELRYALIKSLFESIQICEEKVKRAE 271 Query: 141 STLSNYEQGRTIPEIKPARKI 161 + + +I Sbjct: 272 KMKIAKDLVKGGISTDIILQI 292 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 3/99 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ R TQK++A V +E G SI + + + Sbjct: 9 KIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDL 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGM 127 ++ ++ L+ + + +RK + Sbjct: 69 IPV-SSEKICLKNEEEEILNLVRKYKTINDQELRKVFYL 106 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 1/115 (0%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 IS D I + E V K Y IG ++K R + +Q + + + + Sbjct: 134 GISVD-IVSQAIGLSANECVEEKTGSIYYQIGKKIKEWRLVREYTQKDLAEKMDTTRDEI 192 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 SNYEQGR ++ I + + + ++ IV + +S++ Sbjct: 193 SNYEQGRVAIPLEKLYAIAETLSISITDLLIEEDEIVESELPDLIKEYKKIESQE 247 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y I +++S R +G +Q + +G+ + YE+G I+ I +V + Sbjct: 8 YKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIID 67 Query: 172 IY 173 + Sbjct: 68 LI 69 >gi|331268935|ref|YP_004395427.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium botulinum BKT015925] gi|329125485|gb|AEB75430.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum BKT015925] Length = 432 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK T K++A G ++L E+G + S+ YL N IS +++ Sbjct: 6 LGEKIKRRRKELGMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLANSLNISIEYLM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEET 69 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K RK+ GM+ + + +S E G++ P + + Sbjct: 1 MEILSLGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANSLNIS 59 Query: 169 LDWIYFGDEVIVPK 182 ++++ +E K Sbjct: 60 IEYLMESEETQAEK 73 >gi|323488389|ref|ZP_08093636.1| DNA-binding protein [Planococcus donghaensis MPA1U2] gi|323397896|gb|EGA90695.1| DNA-binding protein [Planococcus donghaensis MPA1U2] Length = 67 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK++R + TQ++++ + ENG S+ A + +++ + ++ E Sbjct: 4 RIKELRTSFGYTQEQLSEKLGVSRQTIISIENGRYKPSLELAYKIATLFQLRIEDVFIFE 63 Query: 95 V 95 Sbjct: 64 K 64 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 34/64 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R G +Q + + LG+ T+ + E GR P ++ A KI + + ++ ++ Sbjct: 1 MEHRIKELRTSFGYTQEQLSEKLGVSRQTIISIENGRYKPSLELAYKIATLFQLRIEDVF 60 Query: 174 FGDE 177 ++ Sbjct: 61 IFEK 64 >gi|316932209|ref|YP_004107191.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599923|gb|ADU42458.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 231 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 4/101 (3%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 DP I ++K IRK ++Q G+ T+ E GR P+ + R I + Sbjct: 2 ETMERDPAYIAEQVKFIRKMHKLTQENLADAAGLTTRTIEKIESGRHRPDEQTLRSIARA 61 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + + + E P+ R K K ++NP Sbjct: 62 MQIDVRYF----EKPTPEQEARQKAEMERALRKMVLVTTNP 98 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++K IRK + TQ+ +A A + E+G + + +I + Sbjct: 11 IAEQVKFIRKMHKLTQENLADAAGLTTRTIEKIESGRHRPDEQTLRSIARAMQIDVRYF 69 >gi|260430989|ref|ZP_05784960.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260414817|gb|EEX08076.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 466 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R + TQKE A +N EN S L L E+ + + Sbjct: 9 GAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPISTTVVLALAQEFGMDVTELST 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + L +R Sbjct: 69 GDSERLVSDMREALADPVFADAIPPLADLR 98 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ +R ++Q EF LG+ L+ E + Q + Sbjct: 6 LYAGAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPISTTVVLALAQEFGMDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSTGDSERLVSDMREA 81 >gi|239932598|ref|ZP_04689551.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291440960|ref|ZP_06580350.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291343855|gb|EFE70811.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 190 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 24/72 (33%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ + + ++ R T +A A + E + SI + + + Sbjct: 2 SDLDLLTQSLARNVRRWRTERGFTLDALAARAGVSRGMLIQIEQARTNPSIGTVVKIGDA 61 Query: 83 YEISFDWIYDGE 94 +S + D E Sbjct: 62 LGVSITTLLDYE 73 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 20/58 (34%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R ++G + G+ L EQ RT P I KI + + Sbjct: 13 RNVRRWRTERGFTLDALAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSITTLL 70 >gi|254464668|ref|ZP_05078079.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206685576|gb|EDZ46058.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 123 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 23/134 (17%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E G S + + E+ + + Sbjct: 9 VGKRIRHRRWLIGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDALEVPVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +G + + + D + L + S + E R Sbjct: 69 EGLQEEGKAPAEKSAVPEDLMGDK------------------EALDLVRSYYAIPENQRR 110 Query: 152 IPEIKPARKIKQVT 165 ++ +V Sbjct: 111 R-----LFELARVL 119 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 27/72 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R GM+Q + + +G+ + YE G I + + + + G Sbjct: 11 KRIRHRRWLIGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDALEVPVSFFFEG 70 Query: 176 DEVIVPKSIKRA 187 + +++ Sbjct: 71 LQEEGKAPAEKS 82 >gi|206970338|ref|ZP_03231291.1| conserved domain protein [Bacillus cereus AH1134] gi|206734915|gb|EDZ52084.1| conserved domain protein [Bacillus cereus AH1134] Length = 70 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 31/66 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEE 60 Query: 172 IYFGDE 177 I+ ++ Sbjct: 61 IFTLEQ 66 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK N+ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 94 EV 95 E Sbjct: 65 EQ 66 >gi|160944131|ref|ZP_02091361.1| hypothetical protein FAEPRAM212_01633 [Faecalibacterium prausnitzii M21/2] gi|158444807|gb|EDP21811.1| hypothetical protein FAEPRAM212_01633 [Faecalibacterium prausnitzii M21/2] gi|295105048|emb|CBL02592.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 101 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK +R+ +Q +A ++VN +E + + + +Y + L + + D I Sbjct: 2 ISDNIKRLRENTGLSQAALARKLGVTRASVNAWEMELSAPTAQYLIALAQLFHTTTDDIL 61 Query: 92 DGEVIDRRYEDVTNKKRLD-PYAIGARLKSIRKDKGMSQI 130 E ++ N++ Y + A + +++ SQ Sbjct: 62 GLESQEQIVLRGMNEQEKRLVYDLVAYIAERKEESTQSQK 101 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I +K +R++ G+SQ + LG+ ++++ +E + P + + Q+ D I Sbjct: 1 MISDNIKRLRENTGLSQAALARKLGVTRASVNAWEMELSAPTAQYLIALAQLFHTTTDDI 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|153952958|ref|YP_001393723.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146345839|gb|EDK32375.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 179 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 31/67 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G ++K++R T K M+ ++ FE G+ + ++ + + + ++ Sbjct: 2 NIGEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNVRINYF 61 Query: 91 YDGEVID 97 +D E + Sbjct: 62 FDDEEKE 68 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R KG++ + G+ LS +E+G T ++ I V +++ Sbjct: 1 MNIGEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNVRINY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + D+ I+ + +K KS Sbjct: 61 FF--DDEEKELIIRSYDQPFVRQINKAIYKS 89 >gi|167036306|ref|YP_001671537.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166862794|gb|ABZ01202.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 182 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R++ IRK +Q+E+A A S +++ E S SI + + +S Sbjct: 2 DVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEF 61 Query: 91 YDGEVIDRRYEDV 103 + E+ + Sbjct: 62 FSVELEPESPTQI 74 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL++IRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLSGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F + P+S Sbjct: 58 MVEFFSVELEPES 70 >gi|111657106|ref|ZP_01407894.1| hypothetical protein SpneT_02001666 [Streptococcus pneumoniae TIGR4] gi|116517019|ref|YP_816720.1| transcriptional repressor, putative [Streptococcus pneumoniae D39] gi|148985331|ref|ZP_01818554.1| hypothetical protein CGSSp3BS71_08986 [Streptococcus pneumoniae SP3-BS71] gi|148989546|ref|ZP_01820905.1| hypothetical protein CGSSp6BS73_05195 [Streptococcus pneumoniae SP6-BS73] gi|148990563|ref|ZP_01821689.1| hypothetical protein CGSSp6BS73_01218 [Streptococcus pneumoniae SP6-BS73] gi|148993017|ref|ZP_01822611.1| hypothetical protein CGSSp9BS68_10015 [Streptococcus pneumoniae SP9-BS68] gi|148997524|ref|ZP_01825129.1| hypothetical protein CGSSp11BS70_01512 [Streptococcus pneumoniae SP11-BS70] gi|149002814|ref|ZP_01827740.1| hypothetical protein CGSSp14BS69_03738 [Streptococcus pneumoniae SP14-BS69] gi|149011664|ref|ZP_01832860.1| hypothetical protein CGSSp19BS75_06847 [Streptococcus pneumoniae SP19-BS75] gi|168486119|ref|ZP_02710627.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|168489588|ref|ZP_02713787.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|168491326|ref|ZP_02715469.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168493326|ref|ZP_02717469.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|168575882|ref|ZP_02721797.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|169834092|ref|YP_001694857.1| hypothetical protein SPH_1553 [Streptococcus pneumoniae Hungary19A-6] gi|194398183|ref|YP_002038070.1| hypothetical protein SPG_1363 [Streptococcus pneumoniae G54] gi|221232161|ref|YP_002511314.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225854869|ref|YP_002736381.1| hypothetical protein SPJ_1321 [Streptococcus pneumoniae JJA] gi|225857057|ref|YP_002738568.1| hypothetical protein SPP_1441 [Streptococcus pneumoniae P1031] gi|225860797|ref|YP_002742306.1| hypothetical protein SPT_0851 [Streptococcus pneumoniae Taiwan19F-14] gi|237650477|ref|ZP_04524729.1| transcriptional repressor, putative [Streptococcus pneumoniae CCRI 1974] gi|237821792|ref|ZP_04597637.1| transcriptional repressor, putative [Streptococcus pneumoniae CCRI 1974M2] gi|298229247|ref|ZP_06962928.1| transcriptional repressor, putative [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255692|ref|ZP_06979278.1| transcriptional repressor, putative [Streptococcus pneumoniae str. Canada MDR_19A] gi|303254577|ref|ZP_07340681.1| transcriptional repressor, putative [Streptococcus pneumoniae BS455] gi|303259019|ref|ZP_07344998.1| hypothetical protein CGSSp9vBS293_11153 [Streptococcus pneumoniae SP-BS293] gi|303261703|ref|ZP_07347650.1| hypothetical protein CGSSp14BS292_04840 [Streptococcus pneumoniae SP14-BS292] gi|303264372|ref|ZP_07350292.1| hypothetical protein CGSSpBS397_10715 [Streptococcus pneumoniae BS397] gi|303265829|ref|ZP_07351726.1| hypothetical protein CGSSpBS457_02492 [Streptococcus pneumoniae BS457] gi|303268162|ref|ZP_07353961.1| hypothetical protein CGSSpBS458_11388 [Streptococcus pneumoniae BS458] gi|307068076|ref|YP_003877042.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|116077595|gb|ABJ55315.1| transcriptional repressor, putative [Streptococcus pneumoniae D39] gi|147756579|gb|EDK63620.1| hypothetical protein CGSSp11BS70_01512 [Streptococcus pneumoniae SP11-BS70] gi|147759108|gb|EDK66102.1| hypothetical protein CGSSp14BS69_03738 [Streptococcus pneumoniae SP14-BS69] gi|147764095|gb|EDK71027.1| hypothetical protein CGSSp19BS75_06847 [Streptococcus pneumoniae SP19-BS75] gi|147922529|gb|EDK73648.1| hypothetical protein CGSSp3BS71_08986 [Streptococcus pneumoniae SP3-BS71] gi|147924201|gb|EDK75301.1| hypothetical protein CGSSp6BS73_01218 [Streptococcus pneumoniae SP6-BS73] gi|147925089|gb|EDK76170.1| hypothetical protein CGSSp6BS73_05195 [Streptococcus pneumoniae SP6-BS73] gi|147928218|gb|EDK79235.1| hypothetical protein CGSSp9BS68_10015 [Streptococcus pneumoniae SP9-BS68] gi|168996594|gb|ACA37206.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6] gi|183570815|gb|EDT91343.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|183571900|gb|EDT92428.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|183574439|gb|EDT94967.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183576644|gb|EDT97172.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|183578217|gb|EDT98745.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194357850|gb|ACF56298.1| conserved domain protein [Streptococcus pneumoniae G54] gi|220674622|emb|CAR69186.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225723584|gb|ACO19437.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|225724319|gb|ACO20171.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|225727030|gb|ACO22881.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|301794461|emb|CBW36896.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|301800287|emb|CBW32907.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] gi|301802162|emb|CBW34900.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302598545|gb|EFL65587.1| transcriptional repressor, putative [Streptococcus pneumoniae BS455] gi|302637283|gb|EFL67771.1| hypothetical protein CGSSp14BS292_04840 [Streptococcus pneumoniae SP14-BS292] gi|302639962|gb|EFL70418.1| hypothetical protein CGSSpBS293_11153 [Streptococcus pneumoniae SP-BS293] gi|302642241|gb|EFL72589.1| hypothetical protein CGSSpBS458_11388 [Streptococcus pneumoniae BS458] gi|302644564|gb|EFL74814.1| hypothetical protein CGSSpBS457_02492 [Streptococcus pneumoniae BS457] gi|302646184|gb|EFL76411.1| hypothetical protein CGSSpBS397_10715 [Streptococcus pneumoniae BS397] gi|306409613|gb|ADM85040.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|327389609|gb|EGE87954.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332073729|gb|EGI84208.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332075003|gb|EGI85475.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332200864|gb|EGJ14936.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] gi|332203252|gb|EGJ17320.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 69 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R ++ ++Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MAKNLKLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 >gi|89095675|ref|ZP_01168569.1| hypothetical protein B14911_03059 [Bacillus sp. NRRL B-14911] gi|89089421|gb|EAR68528.1| hypothetical protein B14911_03059 [Bacillus sp. NRRL B-14911] Length = 136 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 5/94 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K++R N Q+ +A S ++ +ENG + L + + + +++ Sbjct: 3 LADKLKELRNVRNWKQEYVAELMRIDRSTISRYENGKSIPPYQIVLQFADIFGVDKEYLI 62 Query: 92 DG-----EVIDRRYEDVTNKKRLDPYAIGARLKS 120 + + + Y N + LD I L Sbjct: 63 EELDEMLKNANTSYVLKENPEDLDMEMIRRLLAQ 96 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++ +LK +R + Q +L+ + ST+S YE G++IP + + + ++ Sbjct: 1 MSLADKLKELRNVRNWKQEYVAELMRIDRSTISRYENGKSIPPYQIVLQFADIFGVDKEY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + + + +K A + K++ +D Sbjct: 61 LI----EELDEMLKNANTSYVLKENPED 84 >gi|228904657|ref|ZP_04068720.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222] gi|228854977|gb|EEM99572.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222] Length = 105 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+RIK++RK+ Q E+A + ++L+E+ S + +S D+I Sbjct: 1 MGSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIM 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + K D I R+ + Sbjct: 61 GLSKHKTFDKETSKKIIDDVEDIMKRINQL 90 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G+R+K +RK M Q E +G+ + +S YE + P + I +VT D+I Sbjct: 1 MGSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIM 60 >gi|229028494|ref|ZP_04184614.1| Transcriptional regulator [Bacillus cereus AH1271] gi|228732807|gb|EEL83669.1| Transcriptional regulator [Bacillus cereus AH1271] Length = 66 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R + TQ+++A ++L E G + S+ L + + + + ++ Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYVVDKTLNDLFWE 63 Query: 94 EVI 96 E Sbjct: 64 EEE 66 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R ++Q + + +G+ T+S E+G+ P + KI V K L+ + Sbjct: 1 MAVSKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYVVDKTLNDL 60 Query: 173 YFGDEV 178 ++ +E Sbjct: 61 FWEEEE 66 >gi|170760678|ref|YP_001786283.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407667|gb|ACA56078.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 186 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/87 (11%), Positives = 27/87 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + R+ N +E A + S ++ E G + S+ + + ++ Sbjct: 6 IGQTVLSYRRKNGMNIREFANYSGISTSLISQIERGEANPSLSVLELIAKALNVPLFTLF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E+ ++ + Sbjct: 66 INEIDTDSLISKKQDRKKVYRENKNHI 92 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + IG + S R+ GM+ EF G+ S +S E+G P + I + Sbjct: 1 MKDHRIGQTVLSYRRKNGMNIREFANYSGISTSLISQIERGEANPSLSVLELIAKALNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 L ++ +E+ I + + + + K+ Sbjct: 61 LFTLFI-NEIDTDSLISKKQDRKKVYRENKN 90 >gi|146341034|ref|YP_001206082.1| transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193840|emb|CAL77857.1| putative transcriptional regulatory protein with HTH domain [Bradyrhizobium sp. ORS278] Length = 188 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/105 (9%), Positives = 36/105 (34%), Gaps = 6/105 (5%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + I + + + R++ R + + ++A + ++ ++ E S + + L Sbjct: 1 MDQTIEDFSQRLARRLQLERDSRGWSLADLAERSGVSKATISKIERAEVSPTAVVLVKLA 60 Query: 81 NEYEISFDWIY------DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + ++++ + + + V D L+ Sbjct: 61 SAFDLTLAGLMLRAEAQSERLSKAEEQPVWRDPDTDYLRRQVYLR 105 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 25/70 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ R +G S + + G+ +T+S E+ P K+ L + Sbjct: 14 RRLQLERDSRGWSLADLAERSGVSKATISKIERAEVSPTAVVLVKLASAFDLTLAGLMLR 73 Query: 176 DEVIVPKSIK 185 E + K Sbjct: 74 AEAQSERLSK 83 >gi|89097356|ref|ZP_01170246.1| post-exponential-phase response transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088179|gb|EAR67290.1| post-exponential-phase response transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 115 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 VG RIK +R + E+A + +S ++ E + S++ L S + + Sbjct: 2 VGERIKRLRLLRGFSINELAEKSGVSKSYLSYIERDIQKNPSLQVLSKLAATLGTSVEEL 61 Query: 91 YDGEVIDRRYEDVTNKKRL 109 D +V + + L Sbjct: 62 LDYKVRSNIEPTELDPEWL 80 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 +G R+K +R +G S E + G+ S LS E+ + P ++ K+ ++ Sbjct: 1 MVGERIKRLRLLRGFSINELAEKSGVSKSYLSYIERDIQKNPSLQVLSKLAATLGTSVEE 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|332365977|gb|EGJ43733.1| transcriptional regulator [Streptococcus sanguinis SK1059] Length = 92 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + R+K++R + Q E+A A ++L E G + SI AL + + + Sbjct: 20 KEFMMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFN 78 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E KL G+ T+S E+G P I A KI + ++++ Sbjct: 23 MMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVE 82 Query: 171 WIY 173 ++ Sbjct: 83 NVF 85 >gi|327458674|gb|EGF05022.1| transcriptional regulator [Streptococcus sanguinis SK1057] Length = 96 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + R+K++R + Q E+A A ++L E G + SI AL + + + Sbjct: 24 KEFMMQLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIALKIAHIFN 82 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E +L G+ T+S E+G P I A KI + ++++ Sbjct: 27 MMQLRNRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVE 86 Query: 171 WIY 173 ++ Sbjct: 87 NVF 89 >gi|325972297|ref|YP_004248488.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027535|gb|ADY14294.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 111 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K++RK + QK +A +S + FENG + + L Y I Sbjct: 8 IGNRLKELRKQSGLMQKHIADYLGVDQSLIARFENGDRAMTSATLEKLAMLYCCPASKIL 67 Query: 92 DGEV 95 GE Sbjct: 68 SGEP 71 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 32/88 (36%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D AIG RLK +RK G+ Q LG+ S ++ +E G K+ + Sbjct: 1 MTIDNVAIGNRLKELRKQSGLMQKHIADYLGVDQSLIARFENGDRAMTSATLEKLAMLYC 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSK 194 I G+ N S K Sbjct: 61 CPASKILSGEPCNTSLKFSFRTDNASMK 88 >gi|320321186|gb|EFW77327.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 121 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E+ VG +IK +RK + +Q +A V +E G+ + + + + Sbjct: 7 EMDTLRSFVGAKIKALRKLSGMSQAVLAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAF 66 Query: 84 EISFDWIYDG 93 +++ + G Sbjct: 67 DVAPGELLPG 76 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +GA++K++RK GMSQ + +G + YE+G +P ++ KI + Sbjct: 14 FVGAKIKALRKLSGMSQAVLAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 73 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 G + I+ + + + K + D S Sbjct: 74 LPGGQDILRTRLISLRQAIADKAIEVDSPES 104 >gi|229489782|ref|ZP_04383639.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] gi|229323292|gb|EEN89056.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] Length = 211 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G R+K R++ T ++A + ++ E + S+ + + EI Sbjct: 13 PRIGARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLIKVCAVLEIPVGS 72 Query: 90 IYD 92 +++ Sbjct: 73 LFE 75 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ARLK+ R+ K ++ + + G+ LS E+ + K+ V + + ++ Sbjct: 17 ARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLIKVCAVLEIPVGSLF 74 >gi|226304066|ref|YP_002764024.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226183181|dbj|BAH31285.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 214 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G R+K R++ T ++A + ++ E + S+ + + EI Sbjct: 16 PRIGARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLIKVCAVLEIPVGS 75 Query: 90 IYD 92 +++ Sbjct: 76 LFE 78 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ARLK+ R+ K ++ + + G+ LS E+ + K+ V + + ++ Sbjct: 20 ARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLIKVCAVLEIPVGSLF 77 >gi|225874194|ref|YP_002755653.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793366|gb|ACO33456.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum ATCC 51196] Length = 260 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 27/78 (34%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RIK +R + E+ S ++ E G ++R + + + Sbjct: 26 KRIGERIKRLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLARIAMVFSKDLSY 85 Query: 90 IYDGEVIDRRYEDVTNKK 107 ++ E ++ Sbjct: 86 FFETEPHTLFRVHKKKER 103 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +R K M +E G+ G+ S LS E GR +P ++ +I V K L + + Sbjct: 30 ERIKRLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLARIAMVFSKDLSYFFET 89 Query: 176 D 176 + Sbjct: 90 E 90 >gi|118467518|ref|YP_885321.1| XRE family transcriptional regulator protein [Mycobacterium smegmatis str. MC2 155] gi|118168805|gb|ABK69701.1| transcriptional regulator, XRE family protein [Mycobacterium smegmatis str. MC2 155] Length = 142 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+G+ I+ R+A + +++A A ++ E G+ S + +S + Sbjct: 16 QDIGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEV 75 Query: 90 IY 91 +Y Sbjct: 76 LY 77 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 35/88 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + +++ R+ +S + + G+ N LS E+G P +I + + + +Y Sbjct: 20 SFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVLYVR 79 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ P + + S +++ Sbjct: 80 AGILEPSEPSEVRDAIVNDVSITERQKQ 107 >gi|148652624|ref|YP_001279717.1| bifunctional HTH-domain containing protein/aminotransferase [Psychrobacter sp. PRwf-1] gi|148571708|gb|ABQ93767.1| aminotransferase [Psychrobacter sp. PRwf-1] Length = 543 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGA-----NQLESAVNLFENGMCSTSIRYALYL 79 + +K G R+ +RKA T +++A A++ +E G+ L Sbjct: 3 EQSEFKAQGARLSKLRKAKGLTAEQLATAMTASGSKVSRGAISNWERGINGIVSSKLPAL 62 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKK 107 + S ++ GE D D + ++ Sbjct: 63 AHILGCSEGYLLRGEPADNAEPDNSTQR 90 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 7/102 (6%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLL-----GMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 A GARL +RK KG++ + + + +SN+E+G + + Sbjct: 7 FKAQGARLSKLRKAKGLTAEQLATAMTASGSKVSRGAISNWERGINGIVSSKLPALAHIL 66 Query: 166 KKHLDWIYFGD--EVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ G+ + P + + S+ S ++ P Sbjct: 67 GCSEGYLLRGEPADNAEPDNSTQRSSLASNPPSINSNTNATP 108 >gi|28379369|ref|NP_786261.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28272208|emb|CAD65116.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 303 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 11/142 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G I IR + TQ+E+ G S + FE+G + + IS D Sbjct: 1 MTNIGETIHQIRLSKGLTQQEVYSGI-ISRSFASRFESGANDIGASKLFAILDNLAISAD 59 Query: 89 WI-YDGEVIDRRYEDVT------NKKRLDPYAIGARLKSIRK-DKGMSQ--IEFGKLLGM 138 + + + D + L+ A+ ++ R Q + +L + Sbjct: 60 ELRFIHQNYQPSAYDQALWTIRHAYETLNFPALATWIREHRHSPHAYEQLIASYASILML 119 Query: 139 PNSTLSNYEQGRTIPEIKPARK 160 S T P R+ Sbjct: 120 SYDHRSIGITTTTQPAFDHLRQ 141 >gi|88801079|ref|ZP_01116626.1| transcriptional regulator, putative [Reinekea sp. MED297] gi|88776158|gb|EAR07386.1| transcriptional regulator, putative [Reinekea sp. MED297] Length = 496 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 47/143 (32%), Gaps = 16/143 (11%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK R+ + K+++ S ++ E G + L + +FD + Sbjct: 12 LGIKIKQFRQNAGLSLKQLSERTQLSVSYLSEIEKGKKYPKPEKIVLLAHALNRTFDELV 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI-RKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 ++ D + L LK + G+ + L+ S + Sbjct: 72 SLQLDD-------DLNPLSALLNSPVLKDFPLQQFGIGLSDVFDLVNDSPSKAGAF---- 120 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 ++ +I + +++ Sbjct: 121 ----VRTLLEISRGYDMNVEHFL 139 >gi|325977912|ref|YP_004287628.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177840|emb|CBZ47884.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 199 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK KT KE++ S ++ +ENG + + A L + + +S ++ Sbjct: 14 NRVNELRKQFGKTMKELSAETGIGLSTISNYENGYSTPKKKNAQILADYFGVSVPYLLGL 73 Query: 94 EVIDRRYED 102 + Sbjct: 74 DDNPVLKNP 82 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK G + E G+ ST+SNYE G + P+ K A+ + + ++ D+ Sbjct: 18 ELRKQFGKTMKELSAETGIGLSTISNYENGYSTPKKKNAQILADYFGVSVPYLLGLDDNP 77 Query: 180 VPKSIKRAKGNQSSKKSKKD 199 V K+ +S K KD Sbjct: 78 VLKNPSEDSFVKSFIKFLKD 97 >gi|320176833|gb|EFW51862.1| Putrescine utilization regulator [Shigella dysenteriae CDC 74-1112] Length = 185 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 29/80 (36%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA+ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAICTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRLDPY 112 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDLIEM 88 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ +G+SQ +L G+ +S + EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSEIRQQQGLSQRRAAELSGLTHSAICTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 66 FFSEPEKPDEPQV 78 >gi|313899162|ref|ZP_07832684.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956040|gb|EFR37686.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +++IRK +GM Q E +G+ +LS E+G P KI +V Sbjct: 1 MKINFLGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVT 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 PNELLSGE 68 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK Q+E+A +++ E G+ + + +++ + + Sbjct: 6 LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVTPNELL 65 Query: 92 DGE 94 GE Sbjct: 66 SGE 68 >gi|288959830|ref|YP_003450170.1| transcriptional regulator [Azospirillum sp. B510] gi|288912138|dbj|BAI73626.1| transcriptional regulator [Azospirillum sp. B510] Length = 210 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 6/59 (10%), Positives = 23/59 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++ +R + + +A + + + E G + +I + +++ + Sbjct: 30 LGRHLRRLRTRQGLSLERLARLSGVSRAMLGQIELGRSAPTITVLWKIARALDVTLASL 88 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R +G+S +L G+ + L E GR+ P I KI + L + Sbjct: 32 RHLRRLRTRQGLSLERLARLSGVSRAMLGQIELGRSAPTITVLWKIARALDVTLASLTRF 91 Query: 176 DEVIVPKSIKRAKGN 190 E +++++ Sbjct: 92 TEQGGVVVVRQSETR 106 >gi|21222193|ref|NP_627972.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|256786717|ref|ZP_05525148.1| regulatory protein [Streptomyces lividans TK24] gi|289770612|ref|ZP_06529990.1| regulatory protein [Streptomyces lividans TK24] gi|10432486|emb|CAC10320.1| putative regulatory protein [Streptomyces coelicolor A3(2)] gi|289700811|gb|EFD68240.1| regulatory protein [Streptomyces lividans TK24] Length = 449 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 R D+G R++ +R TQ+++A A + ++ E G S +L + + Sbjct: 4 RDDRNDIGRRVQRLRAERGMTQRQLAEPA-YTPAYISTLEAGRVRPSDEALRHLADRLGV 62 Query: 86 SFDWIYDGEVID 97 ++ + G Sbjct: 63 GYEELVTGRPAR 74 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG R++ +R ++GM+Q + + + +S E GR P + R + Sbjct: 6 DRNDIGRRVQRLRAERGMTQRQLAEPAY-TPAYISTLEAGRVRPSDEALRHLADRLGVGY 64 Query: 170 DWIYFG 175 + + G Sbjct: 65 EELVTG 70 >gi|65319713|ref|ZP_00392672.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] Length = 106 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 28/87 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RK N T +E A A S ++ E G + S+ + + ++ Sbjct: 6 LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 E+ ++ + Sbjct: 66 INEIDTDSLISKKKDRKKVYRENSDHI 92 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ +E+ Sbjct: 13 YRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLFI-NEIDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENSD 90 >gi|327440177|dbj|BAK16542.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 415 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK TQ E+ + ++L ENG S+ ++ N+ + D++ Sbjct: 4 LGERIKKLRKQKKLTQTEVVGE-RLTKGMLSLIENGKAQPSMESLRFIANQLNVDVDFLI 62 Query: 92 DG 93 D Sbjct: 63 DD 64 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEF-GKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +G R+K +RK K ++Q E G+ L LS E G+ P ++ R I + Sbjct: 1 MNILGERIKKLRKQKKLTQTEVVGERL--TKGMLSLIENGKAQPSMESLRFIANQLNVDV 58 Query: 170 DWIY 173 D++ Sbjct: 59 DFLI 62 >gi|321272347|gb|ADW80228.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 306 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG RIK+ R TQK++A + +E G + S+ + IS + Sbjct: 162 KVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSISIIDL 221 Query: 91 YD 92 Sbjct: 222 LP 223 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG ++K+ R TQK++A A+ +E G I+ + ++ + Sbjct: 12 EVGQKVKNWRLERGYTQKDLAEKVGVKYWAILXYEXGNRKIPIKKLYAIAEALSVNVKGL 71 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 GE + ++ L+ K + + + Sbjct: 72 VCGETLPNEKRYFEDEXILNLVKGYKD-KELSEVFYL 107 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 PY +G R+K R +G +Q + +G+ N + YEQGR+ ++ +I +V + Sbjct: 160 PYKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSISII 219 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + + K +K + KK Sbjct: 220 DLLPESDEDSEAEEKLSKLIEEYKK 244 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 40/90 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G ++K+ R ++G +Q + + +G+ + YE G IK I + ++ Sbjct: 11 YEVGQKVKNWRLERGYTQKDLAEKVGVKYWAILXYEXGNRKIPIKKLYAIAEALSVNVKG 70 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + G+ + K + + K KDK+ Sbjct: 71 LVCGETLPNEKRYFEDEXILNLVKGYKDKE 100 >gi|303246038|ref|ZP_07332319.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492434|gb|EFL52305.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G +I+ IR+ + TQ+++A + + E G + S+ L + Sbjct: 1 MDNVQELFGKKIRTIRRNRDMTQEKLAELSGLSLQYIGEIERGRRNPSLTSVETLAAAFG 60 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 I +++ + ED+ Sbjct: 61 IPLAELFNLDEFKLTPEDLR 80 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G ++++IR+++ M+Q + +L G+ + E+GR P + + L ++ Sbjct: 8 FGKKIRTIRRNRDMTQEKLAELSGLSLQYIGEIERGRRNPSLTSVETLAAAFGIPLAELF 67 Query: 174 FGDE-VIVPKSIKRAKGNQSSKKSKK 198 DE + P+ ++R Q ++ Sbjct: 68 NLDEFKLTPEDLRRILARQIEDADEE 93 >gi|297160623|gb|ADI10335.1| helix-turn-helix domain-containing protein [Streptomyces bingchenggensis BCW-1] Length = 80 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + V R+ +R +++ +A + E G + S+ AL + + + + Sbjct: 3 EQVHNRLAMVRAERKVSRQSLAESVGVHYQTIGYIERGQYNPSLDLALKIAKFFGLPVEA 62 Query: 90 IYDGEVIDR 98 ++ E Sbjct: 63 LFSLEPFRP 71 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R ++ +S+ + +G+ T+ E+G+ P + A KI + ++ ++ Sbjct: 6 HNRLAMVRAERKVSRQSLAESVGVHYQTIGYIERGQYNPSLDLALKIAKFFGLPVEALFS 65 Query: 175 GD 176 + Sbjct: 66 LE 67 >gi|227508047|ref|ZP_03938096.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192276|gb|EEI72343.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 274 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 15/127 (11%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K R+A + TQK++A G +S ++ E G + + + L +IS D I Sbjct: 4 KLGGILKQTRQAQHMTQKQLAEGI-CSQSMLSAIEKGQYTPNANLLIALCRRLKISLDDI 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI------------RKDKGMSQIEFGKLLGM 138 N+K LD + + + + G +Q + LG+ Sbjct: 63 SLSSNFAIGRTRDFNQK-LDRLCNQHQYQKLFDFLQKPSVLDAIETDGQTQAYY-YYLGV 120 Query: 139 PNSTLSN 145 L Sbjct: 121 SKWHLQQ 127 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK R+ + M+Q + + + S LS E+G+ P + + K LD I Sbjct: 9 LKQTRQAQHMTQKQLAEGI-CSQSMLSAIEKGQYTPNANLLIALCRRLKISLDDI 62 >gi|225863642|ref|YP_002749020.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225789107|gb|ACO29324.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 403 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 63 EEDDDEMVELIQK 75 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEMVELIQKMERLIKNK 83 >gi|254254750|ref|ZP_04948067.1| DNA-binding protein [Burkholderia dolosa AUO158] gi|124899395|gb|EAY71238.1| DNA-binding protein [Burkholderia dolosa AUO158] Length = 201 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +R+ +T E A A + ++ E G+ S S+ + + ++ + Sbjct: 25 LGGKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAGIAHALGVTVQYFV 84 Query: 92 DGEVIDRR 99 D +R Sbjct: 85 DTPSEERS 92 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 20/56 (35%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++R+ + E G+ LS E+G P + I + + Sbjct: 29 IRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAGIAHALGVTVQYFV 84 >gi|317055556|ref|YP_004104023.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447825|gb|ADU21389.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 297 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + RK TQ +A N AV+ +EN L S D ++ Sbjct: 9 KNLVKRRKELGLTQDMLAQKLNVSAQAVSKWEN-SSYPDSELLPMLAKALGTSIDSLFGS 67 Query: 94 EVIDRRYEDVT 104 + D + + Sbjct: 68 KNSDPETDILQ 78 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 L RK+ G++Q + L + +S +E + P+ + + + +D Sbjct: 5 NVFRKNLVKRRKELGLTQDMLAQKLNVSAQAVSKWENS-SYPDSELLPMLAKALGTSIDS 63 Query: 172 IYFGDEVIVPKSI 184 ++ I Sbjct: 64 LFGSKNSDPETDI 76 >gi|227513209|ref|ZP_03943258.1| hypothetical protein HMPREF0497_2331 [Lactobacillus buchneri ATCC 11577] gi|227083590|gb|EEI18902.1| hypothetical protein HMPREF0497_2331 [Lactobacillus buchneri ATCC 11577] Length = 68 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GT I+D+R A +Q E+ N ++ ++ E ++ +S + + Sbjct: 2 IGTHIRDLRSARQMSQDELGKLVNIDQTLISRVERNHRKVTVDELPKFAKALGVSTEDLL 61 Query: 92 DGEVIDR 98 +GE + R Sbjct: 62 NGEKVSR 68 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++ +R + MSQ E GKL+ + + +S E+ + K + + + Sbjct: 1 MIGTHIRDLRSARQMSQDELGKLVNIDQTLISRVERNHRKVTVDELPKFAKALGVSTEDL 60 Query: 173 YFGDEV 178 G++V Sbjct: 61 LNGEKV 66 >gi|209918706|ref|YP_002292790.1| hypothetical protein ECSE_1515 [Escherichia coli SE11] gi|209911965|dbj|BAG77039.1| conserved hypothetical protein [Escherichia coli SE11] gi|324021052|gb|EGB90271.1| helix-turn-helix protein [Escherichia coli MS 117-3] Length = 178 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/123 (8%), Positives = 34/123 (27%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + F ++ + ++ + + Q+ G + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG 120 Query: 145 NYE 147 E Sbjct: 121 VIE 123 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|170680755|ref|YP_001743794.1| DNA-binding protein [Escherichia coli SMS-3-5] gi|170518473|gb|ACB16651.1| DNA-binding protein [Escherichia coli SMS-3-5] Length = 178 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/123 (8%), Positives = 34/123 (27%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + F ++ + ++ + + Q+ G + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG 120 Query: 145 NYE 147 E Sbjct: 121 VIE 123 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|160942296|ref|ZP_02089605.1| hypothetical protein CLOBOL_07182 [Clostridium bolteae ATCC BAA-613] gi|158434853|gb|EDP12620.1| hypothetical protein CLOBOL_07182 [Clostridium bolteae ATCC BAA-613] Length = 120 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G RI+ R+A +++ +A + S ++ E G S+ L +S D+ Sbjct: 13 KEIGLRIRRQREALGYSRERLAELSEISNSFLSDIERGDRGFSVALLGRLSRVLGLSADY 72 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 I G D+T+ +LK + Sbjct: 73 ILFGTEQATDISDITDMLSGLDGKYIPKLKEL 104 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + + + IG R++ R+ G S+ +L + NS LS+ E+G + + Sbjct: 2 KRGEHMTEHNAKEIGLRIRRQREALGYSRERLAELSEISNSFLSDIERGDRGFSVALLGR 61 Query: 161 IKQVTKKHLDWIYFGDEVIVPKS 183 + +V D+I FG E S Sbjct: 62 LSRVLGLSADYILFGTEQATDIS 84 >gi|254975373|ref|ZP_05271845.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092763|ref|ZP_05322241.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255314502|ref|ZP_05356085.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517179|ref|ZP_05384855.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650283|ref|ZP_05397185.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683399|ref|YP_003214684.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686995|ref|YP_003218128.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306520257|ref|ZP_07406604.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260209562|emb|CBA63177.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213011|emb|CBE04338.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 181 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 15/176 (8%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I ++RK N + +++A A+ S ++ E G+ + S+ + + + Sbjct: 5 NLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLFTF 64 Query: 91 YDGEVIDRR-YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + EV + N+K++ + I +EF ++ + +T S ++ Sbjct: 65 FVSEVDKKNLIVRHDNRKKVILPGSKEVIYEILIPDSSGNLEFA-IMDLAPNTSSCIDRI 123 Query: 150 RTIPEIKPARKIKQVTK------KHLDW--IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + +I V + D + GD V VP K N S+ +SK Sbjct: 124 THNGD-----EIAYVLEGEVKLFMDDDEFTLSKGDSVKVPLGTKHKWQNDSNSESK 174 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++ +RK + +S + KL + S LS E+G P + + I Sbjct: 1 MNDLNLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F EV I R + Sbjct: 61 L-FTFFVSEVDKKNLIVRHDNRKK 83 >gi|86739175|ref|YP_479575.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566037|gb|ABD09846.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 325 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+G I+D R + + +++A A ++ E G+ S + IS + Sbjct: 70 RDLGDFIRDQRHSAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEV 129 Query: 90 IYDGEVIDRRYEDVTNKK 107 +Y I + N Sbjct: 130 LYVQAGILEERQGEENVM 147 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 9/110 (8%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 E L+ +G ++ R +S + K G+ N LS E+G P Sbjct: 53 PRPPAKEAFDPVAALNVRDLGDFIRDQRHSAQISLRQLAKQAGVSNPYLSQIERGLRRPS 112 Query: 155 IKPARKIKQVTKKHLDWIY---------FGDEVIVPKSIKRAKGNQSSKK 195 + ++I + + + +Y G+E ++ + ++ K+ Sbjct: 113 AEILQQIAKALRISAEVLYVQAGILEERQGEENVMAAVLADESLSERQKQ 162 >gi|53720319|ref|YP_109305.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167817109|ref|ZP_02448789.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|237813540|ref|YP_002897991.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|254299001|ref|ZP_04966451.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|52210733|emb|CAH36717.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|157809113|gb|EDO86283.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|237503057|gb|ACQ95375.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] Length = 195 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 31/90 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + R++ +R + +A + S ++L E + + L N +S Sbjct: 2 DINQRIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 +++ + R ++ + A Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPA 91 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|26989603|ref|NP_745028.1| XRE family transcriptional regulator [Pseudomonas putida KT2440] gi|148548020|ref|YP_001268122.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|167033897|ref|YP_001669128.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|325276264|ref|ZP_08142055.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|24984484|gb|AAN68492.1|AE016481_8 transcriptional regulator, putative [Pseudomonas putida KT2440] gi|148512078|gb|ABQ78938.1| transcriptional regulator, XRE family [Pseudomonas putida F1] gi|166860385|gb|ABY98792.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] gi|298682210|gb|ADI95276.1| XRE family transcriptional regulator [Pseudomonas putida] gi|313499097|gb|ADR60463.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] gi|324098604|gb|EGB96659.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 181 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 17/108 (15%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY--------LRNE 82 D GTR+K +R+ NN +Q+E+A + S ++ E S S+ L Sbjct: 2 DTGTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMSLAEF 61 Query: 83 YEISFD-------WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + SFD +++ G + + G +++ +R+ Sbjct: 62 F--SFDEPVREERYVFRGGEQPDLGRNGLRMLLVGASVEGRQMRMLRE 107 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK +R+ +SQ E + G+ NST+S EQ R P + +K+ + L Sbjct: 1 MDTGTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMSLAE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + DE + + G Q Sbjct: 61 FFSFDEPVREERYVFRGGEQP 81 >gi|16129393|ref|NP_415951.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|89108277|ref|AP_002057.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|157157044|ref|YP_001462706.1| DNA-binding protein [Escherichia coli E24377A] gi|157160911|ref|YP_001458229.1| DNA-binding protein [Escherichia coli HS] gi|170020236|ref|YP_001725190.1| XRE family transcriptional regulator [Escherichia coli ATCC 8739] gi|170081108|ref|YP_001730428.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|191164983|ref|ZP_03026827.1| DNA-binding protein [Escherichia coli B7A] gi|193066983|ref|ZP_03047952.1| DNA-binding protein [Escherichia coli E110019] gi|194436585|ref|ZP_03068686.1| DNA-binding protein [Escherichia coli 101-1] gi|238900660|ref|YP_002926456.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|253773591|ref|YP_003036422.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161493|ref|YP_003044601.1| putative DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|256022888|ref|ZP_05436753.1| predicted DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|260855159|ref|YP_003229050.1| putative DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|260867878|ref|YP_003234280.1| putative DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|293433816|ref|ZP_06662244.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088] gi|297521909|ref|ZP_06940295.1| putative DNA-binding transcriptional regulator [Escherichia coli OP50] gi|300921799|ref|ZP_07137960.1| helix-turn-helix protein [Escherichia coli MS 182-1] gi|300928985|ref|ZP_07144486.1| helix-turn-helix protein [Escherichia coli MS 187-1] gi|300948113|ref|ZP_07162247.1| helix-turn-helix protein [Escherichia coli MS 116-1] gi|300958230|ref|ZP_07170381.1| helix-turn-helix protein [Escherichia coli MS 175-1] gi|301020147|ref|ZP_07184274.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|301326006|ref|ZP_07219420.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|301645375|ref|ZP_07245319.1| helix-turn-helix protein [Escherichia coli MS 146-1] gi|307138086|ref|ZP_07497442.1| putative DNA-binding transcriptional regulator [Escherichia coli H736] gi|307309783|ref|ZP_07589433.1| transcriptional regulator, XRE family [Escherichia coli W] gi|309794168|ref|ZP_07688592.1| helix-turn-helix protein [Escherichia coli MS 145-7] gi|312971601|ref|ZP_07785776.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|331642010|ref|ZP_08343145.1| putative oxidoreductase/putative repressor [Escherichia coli H736] gi|2829660|sp|P77626|YDCN_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator ydcN gi|1742340|dbj|BAA15062.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|1787704|gb|AAC74516.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|157066591|gb|ABV05846.1| DNA-binding protein [Escherichia coli HS] gi|157079074|gb|ABV18782.1| DNA-binding protein [Escherichia coli E24377A] gi|169755164|gb|ACA77863.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169888943|gb|ACB02650.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|190904755|gb|EDV64460.1| DNA-binding protein [Escherichia coli B7A] gi|192959573|gb|EDV90007.1| DNA-binding protein [Escherichia coli E110019] gi|194424617|gb|EDX40603.1| DNA-binding protein [Escherichia coli 101-1] gi|238862307|gb|ACR64305.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|242377187|emb|CAQ31919.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|253324635|gb|ACT29237.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973394|gb|ACT39065.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253977605|gb|ACT43275.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|257753808|dbj|BAI25310.1| predicted DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|257764234|dbj|BAI35729.1| predicted DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|260449440|gb|ACX39862.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|291324635|gb|EFE64057.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088] gi|299881904|gb|EFI90115.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|300315108|gb|EFJ64892.1| helix-turn-helix protein [Escherichia coli MS 175-1] gi|300421824|gb|EFK05135.1| helix-turn-helix protein [Escherichia coli MS 182-1] gi|300452356|gb|EFK15976.1| helix-turn-helix protein [Escherichia coli MS 116-1] gi|300463050|gb|EFK26543.1| helix-turn-helix protein [Escherichia coli MS 187-1] gi|300847223|gb|EFK74983.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|301076329|gb|EFK91135.1| helix-turn-helix protein [Escherichia coli MS 146-1] gi|306909501|gb|EFN39995.1| transcriptional regulator, XRE family [Escherichia coli W] gi|308122073|gb|EFO59335.1| helix-turn-helix protein [Escherichia coli MS 145-7] gi|310336198|gb|EFQ01398.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|315060712|gb|ADT75039.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|315136074|dbj|BAJ43233.1| putative DNA-binding transcriptional regulator [Escherichia coli DH1] gi|315619613|gb|EFV00138.1| helix-turn-helix family protein [Escherichia coli 3431] gi|320187371|gb|EFW62064.1| Transcriptional regulator yidN, Cro/CI family [Shigella flexneri CDC 796-83] gi|320199440|gb|EFW74031.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli EC4100B] gi|323157392|gb|EFZ43506.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|323178085|gb|EFZ63664.1| helix-turn-helix family protein [Escherichia coli 1180] gi|323185431|gb|EFZ70792.1| helix-turn-helix family protein [Escherichia coli 1357] gi|323378722|gb|ADX50990.1| transcriptional regulator, XRE family [Escherichia coli KO11] gi|323942192|gb|EGB38365.1| helix-turn-helix protein [Escherichia coli E482] gi|323947787|gb|EGB43789.1| helix-turn-helix protein [Escherichia coli H120] gi|323962367|gb|EGB57953.1| helix-turn-helix protein [Escherichia coli H489] gi|323973651|gb|EGB68830.1| helix-turn-helix protein [Escherichia coli TA007] gi|324117665|gb|EGC11569.1| helix-turn-helix protein [Escherichia coli E1167] gi|331038808|gb|EGI11028.1| putative oxidoreductase/putative repressor [Escherichia coli H736] gi|332343099|gb|AEE56433.1| helix-turn-helix family protein YdcN [Escherichia coli UMNK88] Length = 178 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/123 (8%), Positives = 34/123 (27%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + F ++ + ++ + + Q+ G + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG 120 Query: 145 NYE 147 E Sbjct: 121 VIE 123 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|322805848|emb|CBZ03413.1| DNA-binding protein; possible transcriptional regulator [Clostridium botulinum H04402 065] Length = 370 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 34/90 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ+++A +AV+ +E+G I + + ++ D + Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIATLFNVTIDTLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ E + + + Sbjct: 66 NFKIELSNEEVMALFSECEKLFSNGEIHKA 95 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 35/76 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG + +RK+K ++Q + +G+ + +S +E G + P+I I + Sbjct: 1 MEKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIATLFNVT 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + + Sbjct: 61 IDTLLNFKIELSNEEV 76 >gi|322391623|ref|ZP_08065092.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145706|gb|EFX41098.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 64 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 36/64 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK +G+ Q + K+LG+ T+ E + P ++ A KI ++ + H++ I+ Sbjct: 1 MKNNIKQLRKSEGLRQEDMAKILGVSRQTIIAIENDKYNPTLELAMKIARLLRLHVEEIF 60 Query: 174 FGDE 177 ++ Sbjct: 61 VLED 64 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RK+ Q++MA + EN + ++ A+ + + + I+ Sbjct: 3 NNIKQLRKSEGLRQEDMAKILGVSRQTIIAIENDKYNPTLELAMKIARLLRLHVEEIFVL 62 Query: 94 EV 95 E Sbjct: 63 ED 64 >gi|317126051|ref|YP_004100163.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043] gi|315590139|gb|ADU49436.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043] Length = 138 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 4/120 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 D+G +++ R+ + +++A A ++ E G+ S + E+S + Sbjct: 5 PDLGAYLREQRENAQLSLRQLAEIAGISNPYLSQIERGLKKPSAEILQQIAKGLEVSAES 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + D D A L +I D ++ + L+ + S + E+ Sbjct: 65 L----YVRAGILDERVLSHGDSAAAPDVLSAIAVDPDLTDRQRAVLVEIYQSFVGPKERR 120 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A L+ R++ +S + ++ G+ N LS E+G P + ++I + + + +Y Sbjct: 9 AYLREQRENAQLSLRQLAEIAGISNPYLSQIERGLKKPSAEILQQIAKGLEVSAESLY 66 >gi|312144436|ref|YP_003995882.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905087|gb|ADQ15528.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp. 'sapolanicus'] Length = 178 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI++ RK+ + + ++A N+ S ++ E G+ SI + E+ + Sbjct: 2 LGQRIRNKRKSKSMSLNDVAQKINKTSSYLSQVERGLAEPSITALREIARALEVPIFYFL 61 Query: 92 DGEVIDRRYEDVTNKKRLDP 111 E ++ L+ Sbjct: 62 IEEESHNAVVRKEQRRILNF 81 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R+++ RK K MS + + + +S LS E+G P I R+I + + + + Sbjct: 1 MLGQRIRNKRKSKSMSLNDVAQKINKTSSYLSQVERGLAEPSITALREIARALEVPIFYF 60 Query: 173 YFGDEVIVPKSIKRAK 188 +E K + Sbjct: 61 LIEEESHNAVVRKEQR 76 >gi|309774998|ref|ZP_07670014.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319936258|ref|ZP_08010677.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|325262574|ref|ZP_08129311.1| transcriptional regulator, PbsX family [Clostridium sp. D5] gi|308917252|gb|EFP62976.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319808690|gb|EFW05232.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|324032406|gb|EGB93684.1| transcriptional regulator, PbsX family [Clostridium sp. D5] Length = 211 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +++IRK +GM Q E +G+ +LS E+G P + KI +V Sbjct: 6 MKISHLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVT 65 Query: 169 LDWIYFGDEVIVPKSIKR 186 + + G+ V +S K Sbjct: 66 PNELLSGEWKYVNQSEKE 83 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK Q+E+A +++ E G+ + + +++ + + Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 Query: 92 DGE 94 GE Sbjct: 71 SGE 73 >gi|283768743|ref|ZP_06341654.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104529|gb|EFC05902.1| DNA-binding protein [Bulleidia extructa W1219] Length = 71 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R N Q+EM ++L E G S S+ AL + +++ + I+ Sbjct: 5 NRLKIFRAMLNINQQEMGRLCGVSRQTISLIERGDYSPSVTLALTIARICDVTVEEIFYL 64 Query: 94 EVIDRRY 100 + + Sbjct: 65 QEEEENE 71 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK R ++Q E G+L G+ T+S E+G P + A I ++ ++ Sbjct: 1 MVLQNRLKIFRAMLNINQQEMGRLCGVSRQTISLIERGDYSPSVTLALTIARICDVTVEE 60 Query: 172 IYFGDEVIVPK 182 I++ E + Sbjct: 61 IFYLQEEEENE 71 >gi|229549206|ref|ZP_04437931.1| XRE family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|307270616|ref|ZP_07551907.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307276916|ref|ZP_07558026.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307287508|ref|ZP_07567551.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|229305443|gb|EEN71439.1| XRE family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|306501246|gb|EFM70549.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306506339|gb|EFM75499.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306512926|gb|EFM81567.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|315025553|gb|EFT37485.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315032799|gb|EFT44731.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035182|gb|EFT47114.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315143802|gb|EFT87818.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315159317|gb|EFU03334.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315162169|gb|EFU06186.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315164906|gb|EFU08923.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315168790|gb|EFU12807.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|329577382|gb|EGG58837.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 231 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 R TQ E+A ++ +EN +I + L N YE++ D + + Sbjct: 3 RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLKEDNTMVE 62 Query: 100 YEDVT 104 Sbjct: 63 KLSKD 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 36/74 (48%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 R + G++Q E + L + T+SN+E ++ P I ++ + + LD + D +V Sbjct: 3 RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLKEDNTMVE 62 Query: 182 KSIKRAKGNQSSKK 195 K K + Q KK Sbjct: 63 KLSKDIREGQKYKK 76 >gi|167046791|ref|YP_001661649.1| DNA-binding protein [Leuconostoc citreum] gi|226938552|ref|YP_002802311.1| putative DNA-binding protein [Leuconostoc citreum] gi|229587263|ref|YP_002860111.1| putative DNA-binding protein [Leuconostoc citreum] gi|166788512|dbj|BAG06708.1| DNA-binding protein [Leuconostoc citreum] gi|209165331|gb|ACI41227.1| putative DNA-binding protein [Leuconostoc citreum] gi|225380897|gb|ACN88703.1| putative DNA-binding protein [Leuconostoc citreum] Length = 194 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ T + + RK ++TQ+++A +++ +ENG I + L N Y S D I Sbjct: 2 ELSTILVEQRKKKDETQQKVADNLFITRQSLSNWENGKNFPDIPMLIELSNYYNFSLDII 61 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + L RK K +Q + L + +LSN+E G+ P+I ++ LD Sbjct: 1 MELSTILVEQRKKKDETQQKVADNLFITRQSLSNWENGKNFPDIPMLIELSNYYNFSLD- 59 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I GD ++ K K + + K +KK Sbjct: 60 IIKGDTELMNKVQKDYELINTKKANKK 86 >gi|154496243|ref|ZP_02034939.1| hypothetical protein BACCAP_00528 [Bacteroides capillosus ATCC 29799] gi|150274326|gb|EDN01403.1| hypothetical protein BACCAP_00528 [Bacteroides capillosus ATCC 29799] Length = 67 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI +RK TQ+E+A + ENG + S+ A L + ++ + ++ Sbjct: 3 NRIAQLRKEGRITQEELAEAVGVTRQTIISLENGRYNASLLLAHKLAQYFHLTIEELFVF 62 Query: 94 EVID 97 E + Sbjct: 63 EEDE 66 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+ +RK+ ++Q E + +G+ T+ + E GR + A K+ Q ++ ++ Sbjct: 1 MKNRIAQLRKEGRITQEELAEAVGVTRQTIISLENGRYNASLLLAHKLAQYFHLTIEELF 60 Query: 174 FGDEV 178 +E Sbjct: 61 VFEED 65 >gi|145294487|ref|YP_001137308.1| hypothetical protein cgR_0442 [Corynebacterium glutamicum R] gi|140844407|dbj|BAF53406.1| hypothetical protein [Corynebacterium glutamicum R] Length = 474 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R+ + +Q +A S VN E+ + ++ L + + + D + Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR--LKSIRKD-KGMSQIEFG 133 D R LD A L+ + + Q+ Sbjct: 64 FSRDDDSRLLAEVQDVMLDREINPANVELQELSEMVYNHPQLARA 108 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +R+++ +SQ LG+ S ++ E + +I + Sbjct: 1 MGKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + D+ + ++ Sbjct: 61 ATFFSRDDDSRLLAEVQD 78 >gi|108797622|ref|YP_637819.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119866709|ref|YP_936661.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126433246|ref|YP_001068937.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108768041|gb|ABG06763.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119692798|gb|ABL89871.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126233046|gb|ABN96446.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 161 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+G+ I+ R+A + +++A A ++ E G+ S + +S + Sbjct: 16 QDIGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEV 75 Query: 90 IY 91 +Y Sbjct: 76 LY 77 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + ++S R+ +S + + G+ N LS E+G P +I + + + +Y Sbjct: 20 SFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVLYVR 79 Query: 176 DEVIVPKS 183 ++ P Sbjct: 80 AGILEPSE 87 >gi|62389267|ref|YP_224669.1| MerR family transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21323134|dbj|BAB97762.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41324601|emb|CAF19083.1| transcriptional regulator, MerR family [Corynebacterium glutamicum ATCC 13032] Length = 474 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R+ + +Q +A S VN E+ + ++ L + + + D + Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR--LKSIRKD-KGMSQIEFG 133 D R LD A L+ + + Q+ Sbjct: 64 FSRDDDSRLLAEVQDVMLDREINPANVELQELSEMVYNHPQLARA 108 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +R+++ +SQ LG+ S ++ E + +I + Sbjct: 1 MGKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + D+ + ++ Sbjct: 61 ATFFSRDDDSRLLAEVQD 78 >gi|77405440|ref|ZP_00782533.1| cI-like repressor [Streptococcus agalactiae H36B] gi|77175933|gb|EAO78709.1| cI-like repressor [Streptococcus agalactiae H36B] Length = 69 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + ++ VG +I+ RK TQ ++A + V + ENG T+I+ + L + S Sbjct: 2 ELYEFVGEQIRHQRKLAKLTQSQLADLLETNQQTVGMMENGRRRTTIQDLVKLCKIFNAS 61 Query: 87 FDWIYD 92 D Sbjct: 62 ADDFLP 67 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +++ RK ++Q + LL T+ E GR I+ K+ ++ D Sbjct: 4 YEFVGEQIRHQRKLAKLTQSQLADLLETNQQTVGMMENGRRRTTIQDLVKLCKIFNASAD 63 Query: 171 WIY 173 Sbjct: 64 DFL 66 >gi|319653363|ref|ZP_08007463.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317394847|gb|EFV75585.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 107 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R+ + E+A A +S ++ E + SI++ + + D + Sbjct: 2 IGDRVKKLRQDKKMSLSELADQAGVAKSYLSSLERNLQTNPSIQFLEKIAGVLNVPVDHL 61 Query: 91 YDGEVIDRRYEDVT 104 ++ + Sbjct: 62 IHEQINKEDLDSEW 75 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R+DK MS E G+ S LS+ E+ +T P I+ KI V +D Sbjct: 1 MIGDRVKKLRQDKKMSLSELADQAGVAKSYLSSLERNLQTNPSIQFLEKIAGVLNVPVDH 60 Query: 172 IYFG---DEVIVPKSIKRAKGNQSSKKSKK 198 + E + + +K K S SK+ Sbjct: 61 LIHEQINKEDLDSEWMKIVKEAMESGVSKE 90 >gi|291295432|ref|YP_003506830.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470391|gb|ADD27810.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 186 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 2/103 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R A T +++A + +S ++ E + S+ L + +I ++ Sbjct: 12 IGPRLRAARLAKGLTLEQVAQRSGLDKSFISRLERNATAASVASLLKVCAALDIQPGSLF 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEF 132 D + + + + + +R + + + E Sbjct: 72 DPPSTNLVRSGEAPSAHFGGWGVRDFILSRGLRGELMLLRTEI 114 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L++ R KG++ + + G+ S +S E+ T + K+ ++ Sbjct: 16 LRAARLAKGLTLEQVAQRSGLDKSFISRLERNATAASVASLLKVCAALDIQPGSLF 71 >gi|110679308|ref|YP_682315.1| DNA-binding protein, putative [Roseobacter denitrificans OCh 114] gi|109455424|gb|ABG31629.1| DNA-binding protein, putative [Roseobacter denitrificans OCh 114] Length = 475 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 37/119 (31%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R TQK+ A +N EN S L L E+ + + + Sbjct: 18 GAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSE 77 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G+ + L +R + L + S E+ + Sbjct: 78 GDSERLVSDMREALADPVFAETLPPLADLRLAASNAPTFAHAFLKLHRSYRQMQERLAS 136 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 30/90 (33%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + + GA+L+ +R G +Q +F LG+ L+ E Sbjct: 1 MQNLRKGTRMATQKLYAGAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTV 60 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 + Q + + GD + ++ A Sbjct: 61 VLALAQEFGLDVTELSEGDSERLVSDMREA 90 >gi|328955766|ref|YP_004373099.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456090|gb|AEB07284.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 72 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 30 KDVGTRIKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI+ +RK +Q A S E G S +++ + +S Sbjct: 7 QQIGARIRCLRKKRTGLSQNGFACQIGIDRSYFATIEQGKHSATLQMLARISQGLGVSLQ 66 Query: 89 WIYDG 93 +++G Sbjct: 67 ELFEG 71 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 116 ARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 AR++ +RK + G+SQ F +G+ S + EQG+ ++ +I Q L ++ Sbjct: 11 ARIRCLRKKRTGLSQNGFACQIGIDRSYFATIEQGKHSATLQMLARISQGLGVSLQELFE 70 Query: 175 G 175 G Sbjct: 71 G 71 >gi|319893529|ref|YP_004150404.1| DNA-binding protein [Staphylococcus pseudintermedius HKU10-03] gi|317163225|gb|ADV06768.1| DNA-binding protein [Staphylococcus pseudintermedius HKU10-03] Length = 182 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 33/85 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + V ++ R+A+ + ++A ++ ++ E G+ + SI + N Sbjct: 1 MENINTVVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGVANPSINTLWKIANGLR 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 I + E + D ++ + + Sbjct: 61 IPLTSLISEENEAIQKIDRSDIQPI 85 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + L+ R+ +S + +L G+ + +S E+G P I KI + L + Sbjct: 7 VVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGVANPSINTLWKIANGLRIPLTSL 66 Query: 173 YFGDEVIVPK 182 + + K Sbjct: 67 ISEENEAIQK 76 >gi|300933761|ref|ZP_07149017.1| putative transcriptional regulator RamB [Corynebacterium resistens DSM 45100] Length = 497 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++++RK + +Q ++A S VN E+ ++ L + + + Sbjct: 8 VGSRLRELRKDRSLSQAQLAEKLGISASYVNQIEHNSRPLTLAVLDKLTATFGVDATFFS 67 Query: 92 DGEVID 97 G+ Sbjct: 68 RGDATR 73 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G+RL+ +RKD+ +SQ + + LG+ S ++ E + K+ + Sbjct: 7 FVGSRLRELRKDRSLSQAQLAEKLGISASYVNQIEHNSRPLTLAVLDKLTATFGVDATFF 66 Query: 173 YFGD 176 GD Sbjct: 67 SRGD 70 >gi|282849936|ref|ZP_06259319.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella parvula ATCC 17745] gi|282580373|gb|EFB85773.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella parvula ATCC 17745] Length = 153 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K R K+Q E+A +A++ +E G + L Y ++ D + D Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDELLD 63 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK R G SQIE K +G+ N+ LSNYE G P++ + + LD Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|187919965|ref|YP_001888996.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718403|gb|ACD19626.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 190 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 27/82 (32%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++ +R N + E+A + + ++ EN S + L Y + Sbjct: 11 IDRRIAQRLRALRAERNWSLDELAKLSGVSRATLSRLENAAVSPTANVLGKLCVAYGLPM 70 Query: 88 DWIYDGEVIDRRYEDVTNKKRL 109 + D + L Sbjct: 71 SRLMHMVEEDFAPLVPRAAQPL 92 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+++R ++ S E KL G+ +TLS E P K+ + + Sbjct: 17 QRLRALRAERNWSLDELAKLSGVSRATLSRLENAAVSPTANVLGKLCVAYGLPMSRLMHM 76 Query: 176 DEVIVPKSIKRA 187 E + RA Sbjct: 77 VEEDFAPLVPRA 88 >gi|94968170|ref|YP_590218.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550220|gb|ABF40144.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 74 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 27/73 (36%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ + VG RI+ +R TQ +MA+ + ++ E G + + Sbjct: 1 MSSDKHALLLAVGKRIRALRIQKGWTQTDMAVYLDINRGHISDIERGKREAGLITLQIIA 60 Query: 81 NEYEISFDWIYDG 93 + + + G Sbjct: 61 RGLDTTMARLLKG 73 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 34/73 (46%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 +++ K A+G R++++R KG +Q + L + +S+ E+G+ + + I Sbjct: 1 MSSDKHALLLAVGKRIRALRIQKGWTQTDMAVYLDINRGHISDIERGKREAGLITLQIIA 60 Query: 163 QVTKKHLDWIYFG 175 + + + G Sbjct: 61 RGLDTTMARLLKG 73 >gi|329767792|ref|ZP_08259308.1| hypothetical protein HMPREF0428_01005 [Gemella haemolysans M341] gi|328838893|gb|EGF88487.1| hypothetical protein HMPREF0428_01005 [Gemella haemolysans M341] Length = 66 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ RKA TQ E+ +++++LFEN + L Y ++ W+ Sbjct: 3 NRLKEARKARGLTQNEVCKLVFIDQNSLSLFENNHRLPKLDMVEKLAKLYNVNPAWLVGW 62 Query: 94 EVID 97 Sbjct: 63 SDEK 66 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK RK +G++Q E KL+ + ++LS +E +P++ K+ ++ + W+ Sbjct: 1 MINRLKEARKARGLTQNEVCKLVFIDQNSLSLFENNHRLPKLDMVEKLAKLYNVNPAWLV 60 >gi|328954168|ref|YP_004371502.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454492|gb|AEB10321.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM 11109] Length = 172 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 6/101 (5%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG-- 93 I+ +RK T +E+A AN + V E G + +I L + ++++ + Sbjct: 9 IRTLRKKRGITAEELARRANLTRATVAKIEGGDSNPTIETIEALSSVFQLTSSELIRLAE 68 Query: 94 ----EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 E+ + K + + IR D G+ + Sbjct: 69 VVHCEMAITKTFAADGFKGHHIWFPSFEVYCIRADAGIRKE 109 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 31/69 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + ++++RK +G++ E + + +T++ E G + P I+ + V + Sbjct: 2 NKFDFSIIRTLRKKRGITAEELARRANLTRATVAKIEGGDSNPTIETIEALSSVFQLTSS 61 Query: 171 WIYFGDEVI 179 + EV+ Sbjct: 62 ELIRLAEVV 70 >gi|319650688|ref|ZP_08004827.1| hypothetical protein HMPREF1013_01432 [Bacillus sp. 2_A_57_CT2] gi|317397545|gb|EFV78244.1| hypothetical protein HMPREF1013_01432 [Bacillus sp. 2_A_57_CT2] Length = 294 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+++RK N +Q E+A G ++ ++ E G + + ++ + Sbjct: 6 IGQRIRELRKLMNLSQGELAKGI-CTQAQISKIEKGDVYPYASTLYLISERLGVDVNYFF 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 D R ++L + K + Sbjct: 65 DIGTTPRLDYVQEVLRQLTLARRNSNYKEM 94 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ AIG R++ +RK +SQ E K + + +S E+G P I + Sbjct: 1 MNFSAIGQRIRELRKLMNLSQGELAKGI-CTQAQISKIEKGDVYPYASTLYLISERLGVD 59 Query: 169 LDWIY---------FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 +++ + + EV+ ++ R N + + NP Sbjct: 60 VNYFFDIGTTPRLDYVQEVLRQLTLARRNSNYKEMEQIVKTEEKNP 105 >gi|312141280|ref|YP_004008616.1| transcriptional regulator [Rhodococcus equi 103S] gi|325673887|ref|ZP_08153577.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311890619|emb|CBH49937.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555152|gb|EGD24824.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 215 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 TP + + T+++ +R A+ + +MA ++ ++ EN S S+ L Sbjct: 21 TPTGVDLERVIATQVRKLRLASGLSVGDMAAKVGISKAMLSKIENAQTSCSLSTLARLAA 80 Query: 82 EYEISFDWIYDG 93 ++ ++ G Sbjct: 81 GLDVPVTSLFRG 92 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 27/71 (38%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +++ +R G+S + +G+ + LS E +T + ++ + ++ G Sbjct: 34 QVRKLRLASGLSVGDMAAKVGISKAMLSKIENAQTSCSLSTLARLAAGLDVPVTSLFRGA 93 Query: 177 EVIVPKSIKRA 187 + A Sbjct: 94 DSTRDAVFVEA 104 >gi|294498960|ref|YP_003562660.1| putative transcriptional regulator SinR [Bacillus megaterium QM B1551] gi|295704284|ref|YP_003597359.1| transcription regulator SinR [Bacillus megaterium DSM 319] gi|294348897|gb|ADE69226.1| probable transcription regulator sinR [Bacillus megaterium QM B1551] gi|294801943|gb|ADF39009.1| probable transcription regulator sinR [Bacillus megaterium DSM 319] Length = 111 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RI+D+R + E+A A +S ++ E G + SI++ + +S D + Sbjct: 3 IGQRIRDLRTKQGISLTELANRAGVAKSYISSVERGIQLNPSIQFLNKISTSLNVSIDRL 62 Query: 91 YDGEVIDRRYEDVTNK 106 + D+ ++ Sbjct: 63 IHEPMDKSESLDIDDE 78 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLD 170 IG R++ +R +G+S E G+ S +S+ E+G P I+ KI +D Sbjct: 1 MTIGQRIRDLRTKQGISLTELANRAGVAKSYISSVERGIQLNPSIQFLNKISTSLNVSID 60 Query: 171 WIY 173 + Sbjct: 61 RLI 63 >gi|229490209|ref|ZP_04384056.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229322957|gb|EEN88731.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length = 470 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG R++ +R +Q +A S +N E+ + ++ L + + + Sbjct: 6 VGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDT 61 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RL+ +R ++G+SQ K L + S L+ E + +I +V Sbjct: 1 MSKTFVGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVD 60 Query: 169 LDWI 172 + Sbjct: 61 TTFF 64 >gi|229136572|ref|ZP_04265260.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|228646884|gb|EEL03031.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] Length = 65 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R TQ+E+A N ++L E+ + S++ +++ + S D ++ Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDESLDKLFWE 63 Query: 94 E 94 E Sbjct: 64 E 64 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R +KG++Q E ++ + T+S E + P +K I + + LD + Sbjct: 1 MSVSKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDESLDKL 60 Query: 173 YFGD 176 ++ + Sbjct: 61 FWEE 64 >gi|226305059|ref|YP_002765017.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226184174|dbj|BAH32278.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 470 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG R++ +R +Q +A S +N E+ + ++ L + + + Sbjct: 6 VGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDT 61 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RL+ +R ++G+SQ K L + S L+ E + +I +V Sbjct: 1 MSKTFVGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVD 60 Query: 169 LDWI 172 + Sbjct: 61 TTFF 64 >gi|225860372|ref|YP_002741881.1| hypothetical protein SPT_0383 [Streptococcus pneumoniae Taiwan19F-14] gi|270292145|ref|ZP_06198360.1| conserved domain protein [Streptococcus sp. M143] gi|303255209|ref|ZP_07341283.1| transcriptional regulator, putative [Streptococcus pneumoniae BS455] gi|307710486|ref|ZP_07646923.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307711382|ref|ZP_07647800.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|322377106|ref|ZP_08051598.1| conserved domain protein [Streptococcus sp. M334] gi|331265735|ref|YP_004325365.1| putative transcriptional regulator [Streptococcus oralis Uo5] gi|225726800|gb|ACO22651.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|270279673|gb|EFA25515.1| conserved domain protein [Streptococcus sp. M143] gi|302597842|gb|EFL64914.1| transcriptional regulator, putative [Streptococcus pneumoniae BS455] gi|307616800|gb|EFN95982.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|307618749|gb|EFN97888.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|321281819|gb|EFX58827.1| conserved domain protein [Streptococcus sp. M334] gi|326682407|emb|CBZ00024.1| putative transcriptional regulator [Streptococcus oralis Uo5] gi|332202241|gb|EGJ16310.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 64 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK +Q E+A +N+ EN + ++ L L + + ++ Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+ G+SQ+E K +G+ T++ E + P ++ + + + L+ +++ Sbjct: 1 MNRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFW 60 Query: 175 GD 176 D Sbjct: 61 ED 62 >gi|160914768|ref|ZP_02076982.1| hypothetical protein EUBDOL_00775 [Eubacterium dolichum DSM 3991] gi|158433308|gb|EDP11597.1| hypothetical protein EUBDOL_00775 [Eubacterium dolichum DSM 3991] Length = 69 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK R + +Q+++A + L E G + S++ L + + D ++ Sbjct: 4 KRIKIARLECDMSQEDLAKAVGATRQTIGLIEAGNYNPSLKLCLAICKALNKTLDDLFWE 63 Query: 94 EVIDRR 99 E + + Sbjct: 64 EQHENK 69 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+K R + MSQ + K +G T+ E G P +K I + K LD + Sbjct: 1 MKNKRIKIARLECDMSQEDLAKAVGATRQTIGLIEAGNYNPSLKLCLAICKALNKTLDDL 60 Query: 173 YFGDE 177 ++ ++ Sbjct: 61 FWEEQ 65 >gi|126654396|ref|ZP_01726142.1| predicted transcription regulator, containing DNA-binding HTH domain [Bacillus sp. B14905] gi|126589164|gb|EAZ83345.1| predicted transcription regulator, containing DNA-binding HTH domain [Bacillus sp. B14905] Length = 68 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 26/53 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 RI+++RK+ TQ++++ ++ E+G + S+ A + + + Sbjct: 3 NRIRELRKSKKITQEDLSKVVGVSRQSIIAIESGKFNPSLELAYNISKAFNCT 55 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 28/55 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + R++ +RK K ++Q + K++G+ ++ E G+ P ++ A I + Sbjct: 1 MKNRIRELRKSKKITQEDLSKVVGVSRQSIIAIESGKFNPSLELAYNISKAFNCT 55 >gi|261325274|ref|ZP_05964471.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261301254|gb|EEY04751.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 472 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +G +I++IR+ + TQ A S +N EN S L L Y+I Sbjct: 10 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 8 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIVIGA 67 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 68 ISLGDDDRLLSAVSEA 83 >gi|256789090|ref|ZP_05527521.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 190 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 25/72 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ + + +K R T + +A A + E + S+ + + + Sbjct: 3 DLDLLTQSLARNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDAL 62 Query: 84 EISFDWIYDGEV 95 +S + D E Sbjct: 63 GVSITTLLDWEQ 74 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K R ++G + G+ L EQ RT P + KI + + Sbjct: 13 RNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITTLLDW 72 Query: 176 DE 177 ++ Sbjct: 73 EQ 74 >gi|256061267|ref|ZP_05451417.1| hypothetical protein Bneo5_12993 [Brucella neotomae 5K33] Length = 470 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +G +I++IR+ + TQ A S +N EN S L L Y+I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIVIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|229493241|ref|ZP_04387033.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] gi|229319972|gb|EEN85801.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] Length = 268 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 DVG+ +K R+ TQ ++ A ++ E G S L+L ++ Sbjct: 7 DVGSELKRWRERRRLTQLGLSAAAGVSTRHLSFIETGRSKPSRDMILHLSECLDVPL 63 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + +G+ LK R+ + ++Q+ G+ LS E GR+ P + + Sbjct: 1 MTFETMDVGSELKRWRERRRLTQLGLSAAAGVSTRHLSFIETGRSKPSRDMILHLSECLD 60 Query: 167 KHL 169 L Sbjct: 61 VPL 63 >gi|229494729|ref|ZP_04388487.1| helix-turn-helix domain protein [Rhodococcus erythropolis SK121] gi|229318396|gb|EEN84259.1| helix-turn-helix domain protein [Rhodococcus erythropolis SK121] Length = 122 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 34/85 (40%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + GE K L A G L+ +R+D+ + + +GM LS E+G Sbjct: 9 LVKGESELPDPAVAVRKPPLIREAYGRVLREVRRDQDRTLDDVAAKVGMSKQYLSEIERG 68 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYF 174 + P + R I + L+ + F Sbjct: 69 KKEPSSEILRAICEALGMPLEHLLF 93 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 P IR+ + G ++++R+ ++T ++A + ++ E G S + Sbjct: 26 PPLIREAY---GRVLREVRRDQDRTLDDVAAKVGMSKQYLSEIERGKKEPSSEILRAICE 82 Query: 82 EYEISFDWIYDG 93 + + + Sbjct: 83 ALGMPLEHLLFR 94 >gi|222081796|ref|YP_002541161.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726475|gb|ACM29564.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 204 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 + +L + T + + VG R++ +R N + E+A A++ E GM S Sbjct: 1 MDALDDQTDKPARDANEVDVLVGRRVRALRLERNLSLAELATRTGISIGALSQIERGMSS 60 Query: 71 TSIRYALYLRNEYEISFDWIY 91 +R L ++ + Sbjct: 61 LRVRVIWPLAAALDVEPSALI 81 Score = 43.0 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 2/98 (2%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 D+ + + +D ++++R ++ +S E G+ LS E+G + + Sbjct: 5 DDQTDKPARDANEVDVLVGRR-VRALRLERNLSLAELATRTGISIGALSQIERGMSSLRV 63 Query: 156 KPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQS 192 + + + G E + RA + Sbjct: 64 RVIWPLAAALDVEPSALIVDGGEPVNDLYCVRANSRRP 101 >gi|210620995|ref|ZP_03292380.1| hypothetical protein CLOHIR_00323 [Clostridium hiranonis DSM 13275] gi|210154979|gb|EEA85985.1| hypothetical protein CLOHIR_00323 [Clostridium hiranonis DSM 13275] Length = 362 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RKA + TQ+++A AV+ +E+G I L + + + Sbjct: 2 NINQIIKEKRKALSLTQEQLANQLGVSTPAVSKWESGASYPDITILPNLAKILKTDINTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E K L +A+ + Sbjct: 62 LSFQSDLSDEEINNRIKDLSSFALNHTI 89 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 34/82 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +K RK ++Q + LG+ +S +E G + P+I + ++ K ++ Sbjct: 1 MNINQIIKEKRKALSLTQEQLANQLGVSTPAVSKWESGASYPDITILPNLAKILKTDINT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + + + I + SS Sbjct: 61 LLSFQSDLSDEEINNRIKDLSS 82 >gi|168180189|ref|ZP_02614853.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182668963|gb|EDT80939.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 370 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ+++A +AV+ +E+ I + + ++ D + Sbjct: 6 IGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETSYPDITLLPVIAIFFNVTIDTLL 65 Query: 92 D 92 + Sbjct: 66 N 66 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 35/76 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +IG + +RK+KG++Q + +G+ + +S +E + P+I I Sbjct: 1 MEKLSIGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETSYPDITLLPVIAIFFNVT 60 Query: 169 LDWIYFGDEVIVPKSI 184 +D + + + + Sbjct: 61 IDTLLNFKIELSDEEV 76 >gi|21228997|ref|NP_634919.1| transcriptional regulator [Methanosarcina mazei Go1] gi|20907540|gb|AAM32591.1| transcriptional regulator [Methanosarcina mazei Go1] Length = 68 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK++R ++ TQ+ +A + E G + S++ A + + + D ++ E Sbjct: 4 RIKELRARHDLTQEALANLVGVRRETIVFLEKGKYNPSLKLACRIARSLDTTIDELFIFE 63 Query: 95 VIDRR 99 D Sbjct: 64 DTDFE 68 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R ++Q L+G+ T+ E+G+ P +K A +I + +D ++ Sbjct: 1 MKTRIKELRARHDLTQEALANLVGVRRETIVFLEKGKYNPSLKLACRIARSLDTTIDELF 60 Query: 174 FGDEVIVP 181 ++ Sbjct: 61 IFEDTDFE 68 >gi|21219819|ref|NP_625598.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289772984|ref|ZP_06532362.1| transcriptional regulatory protein [Streptomyces lividans TK24] gi|14575569|emb|CAC42859.1| putative transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289703183|gb|EFD70612.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 201 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 25/72 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ + + +K R T + +A A + E + S+ + + + Sbjct: 14 DLDLLTQSLARNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDAL 73 Query: 84 EISFDWIYDGEV 95 +S + D E Sbjct: 74 GVSITTLLDWEQ 85 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K R ++G + G+ L EQ RT P + KI + + Sbjct: 24 RNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITTLLDW 83 Query: 176 DE 177 ++ Sbjct: 84 EQ 85 >gi|134298753|ref|YP_001112249.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051453|gb|ABO49424.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 67 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 31/64 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R+ +Q ++A AN +SA++ ENG + ++ L + ++ + Sbjct: 2 LAVNLKQLREQKGLSQNQLAKLANVPQSAIHYIENGERNPGLQTVEKLADGLGVTLSKLV 61 Query: 92 DGEV 95 + + Sbjct: 62 ESKE 65 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK +R+ KG+SQ + KL +P S + E G P ++ K+ L + Sbjct: 5 NLKQLREQKGLSQNQLAKLANVPQSAIHYIENGERNPGLQTVEKLADGLGVTLSKLVESK 64 Query: 177 EVI 179 E Sbjct: 65 ESQ 67 >gi|326385864|ref|ZP_08207491.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] gi|326209653|gb|EGD60443.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] Length = 76 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 27/72 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +R+ TQ+++ + + ++ E G + ++ L +S Sbjct: 4 RKLVGRNFARLRRDQGLTQEQVEERSGFSQQYLSSLERGRRNPTVITLYELSLALGVSHV 63 Query: 89 WIYDGEVIDRRY 100 + ++ D Sbjct: 64 DLVRPDLEDPTE 75 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +R+D+G++Q + + G LS+ E+GR P + ++ + D Sbjct: 13 RLRRDQGLTQEQVEERSGFSQQYLSSLERGRRNPTVITLYELSLALGVSHVDLVRPD 69 >gi|261823778|ref|YP_003261884.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607791|gb|ACX90277.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 188 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 7/60 (11%), Positives = 21/60 (35%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + +G +K +R+ + A ++ + E G S ++ + + Sbjct: 3 DELTRRIGDTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGLNV 62 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 LK++R++KG S + G+ + L E+G + P + KI Sbjct: 13 LKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGLNV 62 >gi|257125196|ref|YP_003163310.1| XRE family transcriptional regulator [Leptotrichia buccalis C-1013-b] gi|257049135|gb|ACV38319.1| transcriptional regulator, XRE family [Leptotrichia buccalis C-1013-b] Length = 108 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++VG R+K +R+ + +E+A A++ +EN + + L N Y +S + Sbjct: 1 MENVGKRLKSLREKYKFSLEEVAKKIKSSAGAISRYENNERKINSESLIGLSNLYNVSPE 60 Query: 89 WIYDGEVIDRRY 100 +I G D Sbjct: 61 YILYGIKKDSSN 72 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLKS+R+ S E K + +S YE + + + ++I +G Sbjct: 6 KRLKSLREKYKFSLEEVAKKIKSSAGAISRYENNERKINSESLIGLSNLYNVSPEYILYG 65 Query: 176 ---DEVIVPKSIKRAKGNQSSKKSKKDK 200 D + S+ N++ +K++ Sbjct: 66 IKKDSSNLESSVISFFNNENIDFKEKEE 93 >gi|261368333|ref|ZP_05981216.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] gi|282569629|gb|EFB75164.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] Length = 67 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++IRK+ Q+E+A + + ENG + SI A + + + + I+ Sbjct: 3 NRLEEIRKSRGIRQEELAAALSVSRQTIGSLENGRYNPSILLAFKIARYFGMQIEDIFIY 62 Query: 94 EVID 97 E Sbjct: 63 EEEP 66 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK +G+ Q E L + T+ + E GR P I A KI + ++ I+ Sbjct: 1 MKNRLEEIRKSRGIRQEELAAALSVSRQTIGSLENGRYNPSILLAFKIARYFGMQIEDIF 60 Query: 174 FGDEVIV 180 +E + Sbjct: 61 IYEEEPL 67 >gi|172057379|ref|YP_001813839.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989900|gb|ACB60822.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 71 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R+ + SQ + + LG+ T+ + E+ R P ++ A I + ++ I+ Sbjct: 1 MKNRMKGLREARQWSQGQLAEALGVSRQTVISIEKERYNPSLELAFSIAALFDCPIEEIF 60 Query: 174 FGD 176 D Sbjct: 61 VPD 63 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K +R+A +Q ++A V E + S+ A + ++ + I+ Sbjct: 3 NRMKGLREARQWSQGQLAEALGVSRQTVISIEKERYNPSLELAFSIAALFDCPIEEIF 60 >gi|154498983|ref|ZP_02037361.1| hypothetical protein BACCAP_02975 [Bacteroides capillosus ATCC 29799] gi|257440105|ref|ZP_05615860.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|261366750|ref|ZP_05979633.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|332655489|ref|ZP_08421223.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|150271823|gb|EDM99049.1| hypothetical protein BACCAP_02975 [Bacteroides capillosus ATCC 29799] gi|257197457|gb|EEU95741.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|282571577|gb|EFB77112.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|295101293|emb|CBK98838.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] gi|332515590|gb|EGJ45205.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 142 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL-YLRNEYEISFDWI 90 G + K R+ TQ+E+A + +ENG+ + A + +++ +++ Sbjct: 3 FGEKFKAEREKRKLTQQEVADALGINRRMITRYENGISFPRTKDAYRKIAEYFKVDVNYL 62 Query: 91 YDGEVI 96 + Sbjct: 63 LTEDEE 68 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA-RKIKQVTKKHLD 170 G + K+ R+ + ++Q E LG+ ++ YE G + P K A RKI + K ++ Sbjct: 1 MTFGEKFKAEREKRKLTQQEVADALGINRRMITRYENGISFPRTKDAYRKIAEYFKVDVN 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ DE V ++ ++ G++ K++K Sbjct: 61 YLLTEDEEFVVQASEQY-GSRGMKQAKD 87 >gi|23450984|gb|AAN32624.1|AF373594_4 unknown [Thauera aromatica] Length = 303 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 4/111 (3%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ +G R+++IR T+K +A A+ E + E G + SI ++ ++ Sbjct: 27 EFLDALGKRVREIRDRRGMTRKLVAREASVSERHLAHLEAGEGNVSIVLLRHISRALDVP 86 Query: 87 FDWIYDGEVIDRRYEDVTNK--KRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + E D + + +RL + + + R + E + Sbjct: 87 LIELLAVETEDTVERRLIRRFLERLPRHRLEDVV--FRLMRDFGHEEAARR 135 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 1/114 (0%) Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 D + D E T A+G R++ IR +GM++ + + L++ Sbjct: 5 IDDSLNATPNDGDAEVDTRSDAEFLDALGKRVREIRDRRGMTRKLVAREASVSERHLAHL 64 Query: 147 EQGRTIPEIKPARKIKQVTKKHLDWIYFGD-EVIVPKSIKRAKGNQSSKKSKKD 199 E G I R I + L + + E V + + R + + +D Sbjct: 65 EAGEGNVSIVLLRHISRALDVPLIELLAVETEDTVERRLIRRFLERLPRHRLED 118 >gi|27469304|ref|NP_765941.1| hypothetical protein SE2386 [Staphylococcus epidermidis ATCC 12228] gi|57865991|ref|YP_187629.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|242243285|ref|ZP_04797730.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|251811329|ref|ZP_04825802.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874681|ref|ZP_06283563.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|293367617|ref|ZP_06614269.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27316854|gb|AAO06029.1|AE016752_62 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57636649|gb|AAW53437.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|242233234|gb|EES35546.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|251805196|gb|EES57853.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296605|gb|EFA89117.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|291318187|gb|EFE58581.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|319399817|gb|EFV88065.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] gi|329723842|gb|EGG60369.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] gi|329734356|gb|EGG70670.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] gi|329736140|gb|EGG72413.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 67 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G +Q E K G+ T+S E+ P I A KI ++ + ++ I+ Sbjct: 1 MRNRLKELRARDGYNQTELAKKAGISRQTVSLIERNDFTPSILTAIKIARIFGEPVEDIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IMEEE 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q E+A A V+L E + SI A+ + + + I+ Sbjct: 3 NRLKELRARDGYNQTELAKKAGISRQTVSLIERNDFTPSILTAIKIARIFGEPVEDIFIM 62 Query: 94 EVIDR 98 E D Sbjct: 63 EEEDF 67 >gi|16803302|ref|NP_464787.1| hypothetical protein lmo1262 [Listeria monocytogenes EGD-e] gi|46907488|ref|YP_013877.1| ans operon transcriptional repressor [Listeria monocytogenes serotype 4b str. F2365] gi|47097057|ref|ZP_00234629.1| Ans operon transcriptional repressor, putative [Listeria monocytogenes str. 1/2a F6854] gi|224499065|ref|ZP_03667414.1| ans operon transcriptional repressor, putative [Listeria monocytogenes Finland 1988] gi|224501791|ref|ZP_03670098.1| ans operon transcriptional repressor, putative [Listeria monocytogenes FSL R2-561] gi|226223865|ref|YP_002757972.1| transcriptional regulator (phage-related) [Listeria monocytogenes Clip81459] gi|254829981|ref|ZP_05234636.1| transcriptional regulator (phage-related) protein [Listeria monocytogenes 10403S] gi|254852682|ref|ZP_05242030.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254898573|ref|ZP_05258497.1| transcriptional regulator (phage-related) protein [Listeria monocytogenes J0161] gi|254911937|ref|ZP_05261949.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932421|ref|ZP_05265780.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254936263|ref|ZP_05267960.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|254992845|ref|ZP_05275035.1| transcriptional regulator (phage-related) protein [Listeria monocytogenes FSL J2-064] gi|255030300|ref|ZP_05302251.1| transcriptional regulator (phage-related) protein [Listeria monocytogenes LO28] gi|284801647|ref|YP_003413512.1| hypothetical protein LM5578_1400 [Listeria monocytogenes 08-5578] gi|284994789|ref|YP_003416557.1| hypothetical protein LM5923_1353 [Listeria monocytogenes 08-5923] gi|300765298|ref|ZP_07075282.1| hypothetical protein LMHG_11441 [Listeria monocytogenes FSL N1-017] gi|16410678|emb|CAC99340.1| lmo1262 [Listeria monocytogenes EGD-e] gi|46880756|gb|AAT04054.1| putative Ans operon transcriptional repressor [Listeria monocytogenes serotype 4b str. F2365] gi|47014592|gb|EAL05553.1| Ans operon transcriptional repressor, putative [Listeria monocytogenes str. 1/2a F6854] gi|225876327|emb|CAS05036.1| Putative transcriptional regulator (phage-related) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606002|gb|EEW18610.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|258608852|gb|EEW21460.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057209|gb|ADB68150.1| hypothetical protein LM5578_1400 [Listeria monocytogenes 08-5578] gi|284060256|gb|ADB71195.1| hypothetical protein LM5923_1353 [Listeria monocytogenes 08-5923] gi|293583978|gb|EFF96010.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293589898|gb|EFF98232.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|300513981|gb|EFK41044.1| hypothetical protein LMHG_11441 [Listeria monocytogenes FSL N1-017] gi|328466660|gb|EGF37795.1| hypothetical protein LM1816_08803 [Listeria monocytogenes 1816] Length = 131 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D++ + I ++ Sbjct: 61 DYLLGQQSIPTYAPSELQNEK 81 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P+++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATLYDVSVDYLL- 64 Query: 175 GDEVIVPKSIKRAKGNQSSKKS 196 G + I + + + K Sbjct: 65 GQQSIPTYAPSELQNEKDIGKR 86 >gi|313904307|ref|ZP_07837685.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470857|gb|EFR66181.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 114 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 38/85 (44%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + E ++D+G ++K++R N TQ ++A + ++ EN + S+R Y Sbjct: 4 SVENSFDFEDLGRKVKELRIQNGLTQNQVAAELHVTPGYISNVENNRTAMSLRVLSYYAK 63 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNK 106 I+ D + + R + ++ Sbjct: 64 LTGITLDSLVGKIEPEYRPTALDHE 88 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 38/98 (38%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + D +G ++K +R G++Q + L + +SN E RT ++ ++T Sbjct: 6 ENSFDFEDLGRKVKELRIQNGLTQNQVAAELHVTPGYISNVENNRTAMSLRVLSYYAKLT 65 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 LD + E + + + +++K Sbjct: 66 GITLDSLVGKIEPEYRPTALDHELQNTISILTEEEKEK 103 >gi|308071596|ref|YP_003873201.1| transcriptional regulator sinR [Paenibacillus polymyxa E681] gi|305860875|gb|ADM72663.1| HTH-type transcriptional regulator sinR [Paenibacillus polymyxa E681] Length = 114 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 40/94 (42%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + VG RI+ IRKA TQ+++A + ++ + E G + SI + Sbjct: 1 MTKLRDSVGERIRTIRKAKGLTQQQLAELSGLDDAYIGSVERGERNFSIDTLEKVLTALN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +S + + + E + + + A+ + L Sbjct: 61 VSISELMFSKEHMTKDETIRQEAIDEFVALTSTL 94 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+++IRK KG++Q + +L G+ ++ + + E+G I K+ + + F Sbjct: 10 ERIRTIRKAKGLTQQQLAELSGLDDAYIGSVERGERNFSIDTLEKVLTALNVSISELMFS 69 Query: 176 DEVIVPKSIKRAK 188 E + R + Sbjct: 70 KEHMTKDETIRQE 82 >gi|289168327|ref|YP_003446596.1| hypothetical protein smi_1494 [Streptococcus mitis B6] gi|288907894|emb|CBJ22734.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 71 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q K++ ++K R + TQ ++A + L E G + S+ + + Sbjct: 2 QVAKNL--KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKT 59 Query: 87 FDWIYDGEVI 96 D ++ E Sbjct: 60 LDQLFWEEED 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A +LK R + ++Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 2 QVAKNLKLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLD 61 Query: 171 WIYFGDEV 178 +++ +E Sbjct: 62 QLFWEEED 69 >gi|257887265|ref|ZP_05666918.1| predicted protein [Enterococcus faecium 1,141,733] gi|257823319|gb|EEV50251.1| predicted protein [Enterococcus faecium 1,141,733] Length = 130 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 + G ++K +R + ++A+ + S ++ FE G ++ L +S + Sbjct: 2 EFGEKLKKLRISRGLGVNQLALKSGVSASQISRFEKGERKDPTLETLKKLSTALGVSISY 61 Query: 90 IYDGEVIDRRYEDVTNKKR 108 + ++ + Sbjct: 62 FEENSPVNVNTIPEWANED 80 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLD 170 G +LK +R +G+ + G+ S +S +E+ R P ++ +K+ + Sbjct: 1 MEFGEKLKKLRISRGLGVNQLALKSGVSASQISRFEKGERKDPTLETLKKLSTALGVSIS 60 Query: 171 WI 172 + Sbjct: 61 YF 62 >gi|254995332|ref|ZP_05277522.1| hypothetical protein AmarM_05275 [Anaplasma marginale str. Mississippi] Length = 187 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 2/100 (2%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKD--VGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 F+ + ++ +I+ + R + D VG IK R +Q ++A V Sbjct: 2 FITSRTQNQSSIPIIVEGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQK 61 Query: 64 FENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 +E G I L I + D R Sbjct: 62 YEKGTNRIVISRLYELARVLGIEIKDLIAKLQNDLRPITD 101 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R KGMSQ + LG+ + YE+G I ++ +V + + Sbjct: 34 IKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89 >gi|254555377|ref|YP_003061794.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308179374|ref|YP_003923502.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044304|gb|ACT61097.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308044865|gb|ADN97408.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R +QKE+A ++L E G + S++ L L + + D ++ Sbjct: 5 NHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHVLNQTLDTVFWV 64 Query: 94 EV 95 E Sbjct: 65 EP 66 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K R G SQ E G+ TLS E+G P +K + V + LD Sbjct: 1 MLTANHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHVLNQTLDT 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 VFWVE 65 >gi|257415019|ref|ZP_04746193.2| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257200203|gb|EEU98487.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 277 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R +E+A +SA+ +E + + L + Y +S D++ Sbjct: 16 IQERLKDLRLNKGLKLEELAEQTGISKSALGNYEKDDFKEINHGNLILLADFYGVSLDYL 75 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + L + A LKS R + + Sbjct: 76 FCRTENMVEINTPLRELHLSD-EMVALLKSGRINNRLLCE 114 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWI 172 I RLK +R +KG+ E + G+ S L NYE+ + LD++ Sbjct: 16 IQERLKDLRLNKGLKLEELAEQTGISKSALGNYEKDDFKEINHGNLILLADFYGVSLDYL 75 Query: 173 YFGDEVIVP 181 + E +V Sbjct: 76 FCRTENMVE 84 >gi|224026525|ref|ZP_03644891.1| hypothetical protein BACCOPRO_03282 [Bacteroides coprophilus DSM 18228] gi|224019761|gb|EEF77759.1| hypothetical protein BACCOPRO_03282 [Bacteroides coprophilus DSM 18228] Length = 108 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%) Query: 5 PFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF 64 P + ++L + + + K + R++ +R A EMA + Sbjct: 6 PVFRSIEETLLILKQLNDKTMDEQIKQIAERVRGLRDALGLGIDEMAESCGLASAQYAAI 65 Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 E+G C S+ + +++ D + GE Sbjct: 66 ESGECDLSVSSLQKIARHFDVPLDVLMFGEEPKMNAY 102 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Query: 102 DVTNKKRLDPYAIG--ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 N K +D R++ +R G+ E + G+ ++ + E G + + Sbjct: 19 KQLNDKTMDEQIKQIAERVRGLRDALGLGIDEMAESCGLASAQYAAIESGECDLSVSSLQ 78 Query: 160 KIKQVTKKHLDWIYFGDEVIVPKSIKRAKG 189 KI + LD + FG+E + +G Sbjct: 79 KIARHFDVPLDVLMFGEEPKMNAYFLTRRG 108 >gi|253702724|ref|YP_003023913.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251777574|gb|ACT20155.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 307 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI--RYALYLRNEYEISFDWI 90 GTRI+ +R+A TQ +A ++ +EN SI A L + E+ I Sbjct: 20 GTRIRTVREAKRLTQLYVANVVGVTTDTISRWENNRY-PSIKRENAQKLADALEVPLVDI 78 Query: 91 YDGEVIDRRYEDVTN 105 E E + Sbjct: 79 LREETTVPEDEAGAD 93 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI--KPARKIKQVTKKHLDWIYFG 175 ++++R+ K ++Q+ ++G+ T+S +E R P I + A+K+ + L I Sbjct: 23 IRTVREAKRLTQLYVANVVGVTTDTISRWENNRY-PSIKRENAQKLADALEVPLVDILR- 80 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 +E VP+ A S + K Sbjct: 81 EETTVPEDEAGADLPPPSPRLTK 103 >gi|158425156|ref|YP_001526448.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332045|dbj|BAF89530.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 192 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 29/77 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ R+A + + ++A +N + ++ E G S + L + ++ I+ Sbjct: 8 LARRLRQEREARSWSLADLAERSNVSRAMISKIERGEASPTAELLNRLATGFGLTLASIF 67 Query: 92 DGEVIDRRYEDVTNKKR 108 +R Sbjct: 68 AEADPGLDPAAPRVARR 84 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF- 174 RL+ R+ + S + + + + +S E+G P + ++ L I+ Sbjct: 10 RRLRQEREARSWSLADLAERSNVSRAMISKIERGEASPTAELLNRLATGFGLTLASIFAE 69 Query: 175 ---GDEVIVPKSIKRAKGNQ 191 G + P+ +RA+ + Sbjct: 70 ADPGLDPAAPRVARRAEQAE 89 >gi|118478631|ref|YP_895782.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196042846|ref|ZP_03110085.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225865314|ref|YP_002750692.1| DNA-binding protein [Bacillus cereus 03BB102] gi|300118327|ref|ZP_07056074.1| DNA-binding protein [Bacillus cereus SJ1] gi|118417856|gb|ABK86275.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196026330|gb|EDX64998.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225788363|gb|ACO28580.1| DNA-binding protein [Bacillus cereus 03BB102] gi|298724296|gb|EFI64991.1| DNA-binding protein [Bacillus cereus SJ1] Length = 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK+ R N TQ+++A ++ E G + S++ A + + D ++ E Sbjct: 6 KIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 95 VI 96 Sbjct: 66 DE 67 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+S+ E+G+ P ++ A I + +D Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60 Query: 172 IYFGDEV 178 ++ ++ Sbjct: 61 VFIFEDE 67 >gi|90962168|ref|YP_536084.1| Phage immunity repressor [Lactobacillus phage Sal4] gi|90821362|gb|ABE00001.1| Phage immunity repressor [Lactobacillus phage Sal4] Length = 126 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 44/109 (40%), Gaps = 5/109 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +R + + T K++A E+ + +E ++ + L + + +S ++ Sbjct: 17 NRLRQLRLSKDLTLKKVADDIGISENLIGKYEREEREPKLKTWIKLADYFNVSVSYL--- 73 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS--QIEFGKLLGMPN 140 + + + LD + R+ + + + Q E ++ + + Sbjct: 74 QGLTGFSKGKAPSDDLDINYLHQRINRMLEIDNIQELQNELENVIKITH 122 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 27/72 (37%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 K RL+ +R K ++ + +G+ + + YE+ P++K K Sbjct: 2 TTFKKLKYDSNLKPNNRLRQLRLSKDLTLKKVADDIGISENLIGKYEREEREPKLKTWIK 61 Query: 161 IKQVTKKHLDWI 172 + + ++ Sbjct: 62 LADYFNVSVSYL 73 >gi|21229335|ref|NP_635257.1| HTH DNA-binding protein [Methanosarcina mazei Go1] gi|20907919|gb|AAM32929.1| HTH DNA-binding protein [Methanosarcina mazei Go1] Length = 96 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K+ + +KG+ Q E + LG+ T + E GR P I A KI ++ ++ +E Sbjct: 32 KTTQLNKGIKQEELAEALGVSRQTTGSLENGRYNPSIILAFKIAGYFNITIEEVFIYEEE 91 Query: 179 IVPKS 183 K+ Sbjct: 92 NDDKN 96 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%) Query: 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 Q+E+A ENG + SI A + + I+ + ++ E + Sbjct: 38 KGIKQEELAEALGVSRQTTGSLENGRYNPSIILAFKIAGYFNITIEEVFIYEEENDDKN 96 >gi|330447298|ref|ZP_08310948.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491489|dbj|GAA05445.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 112 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ R+ KG++Q+ K LG+ T + E G+T P + I ++T + L W + D Sbjct: 8 IREAREWKGITQVAMAKQLGVARQTYLDLESGKTEPRVLMLLNIAKITGRSLSWFLYDDG 67 Query: 178 VIVPKSIKR 186 I R Sbjct: 68 NPEYGDINR 76 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 31/101 (30%), Gaps = 2/101 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +I++ R+ TQ MA E+G + L + S Sbjct: 1 MAQLALKIREAREWKGITQVAMAKQLGVARQTYLDLESGKTEPRVLMLLNIAKITGRSLS 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 W + N+ + + + L+ ++ ++ Sbjct: 61 WFLYDDGNPEY--GDINRLSMLYAQMPSPLRYKMVEQNINL 99 >gi|312953700|ref|ZP_07772536.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310628374|gb|EFQ11657.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|315151831|gb|EFT95847.1| helix-turn-helix protein [Enterococcus faecalis TX0031] Length = 231 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 R TQ E+A ++ +EN +I + L N YE++ D + + Sbjct: 3 RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLKEDNTMVE 62 Query: 100 YEDVT 104 Sbjct: 63 KLSKD 67 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 36/74 (48%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 R + G++Q E + L + T+SN+E ++ P I ++ + + LD + D +V Sbjct: 3 RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLKEDNTMVE 62 Query: 182 KSIKRAKGNQSSKK 195 K K K Q KK Sbjct: 63 KLSKDIKEGQKYKK 76 >gi|229020269|ref|ZP_04177038.1| hypothetical protein bcere0030_47600 [Bacillus cereus AH1273] gi|229026493|ref|ZP_04182848.1| hypothetical protein bcere0029_47690 [Bacillus cereus AH1272] gi|228734801|gb|EEL85441.1| hypothetical protein bcere0029_47690 [Bacillus cereus AH1272] gi|228741022|gb|EEL91251.1| hypothetical protein bcere0030_47600 [Bacillus cereus AH1273] Length = 73 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+++ R + +Q E+ ++L E G + SI +L + + + I+ Sbjct: 5 NRVREFRAKHRLSQGELGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFGAPVEEIF 62 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ R +SQ E GK +G T+S E+G P I + KI Q+ ++ Sbjct: 1 MKLQNRVREFRAKHRLSQGELGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFGAPVEE 60 Query: 172 IY 173 I+ Sbjct: 61 IF 62 >gi|160937793|ref|ZP_02085152.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC BAA-613] gi|158439232|gb|EDP16985.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + IK R +Q+ +A AV +E G + + L + +E+S + Sbjct: 3 LSENIKARRTQIKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELASLFEMSISELV 62 Query: 92 DGEVIDRRYEDVTNK 106 D + E K Sbjct: 63 DPQTYAEEQETQEQK 77 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 33/87 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +K+ R MSQ LG+ ++ +E G + P K ++ + + + Sbjct: 1 MALSENIKARRTQIKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELASLFEMSISE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + + + K + + +K Sbjct: 61 LVDPQTYAEEQETQEQKLSTKQRNAKM 87 >gi|16126939|ref|NP_421503.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|13424293|gb|AAK24671.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] Length = 74 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + P + + VG ++ +R+A Q E+A A + ++ E G + +++ L Sbjct: 1 MRPPLMDFLAVVGANVRTLREARGLPQDELAHLAGVHATYLSGIETGKRNLTLKVLERLA 60 Query: 81 NEYEISFDWIY 91 + + + Sbjct: 61 SALRVPETDLV 71 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 109 LDPYAIG-ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D A+ A ++++R+ +G+ Q E L G+ + LS E G+ +K ++ + Sbjct: 6 MDFLAVVGANVRTLREARGLPQDELAHLAGVHATYLSGIETGKRNLTLKVLERLASALRV 65 Query: 168 HLDWIY 173 + Sbjct: 66 PETDLV 71 >gi|329298836|ref|ZP_08256172.1| DNA-binding transcriptional repressor PuuR [Plautia stali symbiont] Length = 186 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR+ +Q+ +A + SA++ E S ++ L Y +S + Sbjct: 9 GRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDV 103 ++ + Sbjct: 69 EPKVNATPRII 79 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR++ G+SQ +L G+ +S +S EQ + P + +K+ +V L Sbjct: 6 LAPGRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + +V I Sbjct: 66 FFSEPKVNATPRI 78 >gi|307276551|ref|ZP_07557669.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506661|gb|EFM75813.1| helix-turn-helix protein [Enterococcus faecalis TX2134] Length = 270 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RI+ IR+ + ++ S VN +E G+ + ++ + Sbjct: 6 QAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEVGHVTNE 65 Query: 89 WIYDGEVIDRRYEDVTNKK 107 ++ G+ ++ ++ KK Sbjct: 66 YLLYGDQENQYILEMLQKK 84 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D A+G R++ IR++ +S +FGKL+G +P ST++N+E+G +P+ + +I +V Sbjct: 1 MEIDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEVG 60 Query: 166 KKHLDWIYFGDEV 178 +++ +GD+ Sbjct: 61 HVTNEYLLYGDQE 73 >gi|300783917|ref|YP_003764208.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793431|gb|ADJ43806.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 211 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 27/67 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + VGTRI+++R++ T ++A ++ E G S+ + Sbjct: 22 VDEQAERVGTRIRELRRSRGLTLVQLAGRTGLSHPFLSQLERGHTRPSMVSLDRIAKALG 81 Query: 85 ISFDWIY 91 + + Sbjct: 82 TTQVELI 88 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 26/56 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R+ +G++ ++ G+ + LS E+G T P + +I + + Sbjct: 33 IRELRRSRGLTLVQLAGRTGLSHPFLSQLERGHTRPSMVSLDRIAKALGTTQVELI 88 >gi|282865544|ref|ZP_06274595.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559588|gb|EFB65139.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 285 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLREIKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDH 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RVVDSLM--QMAKDSRQQGWWHAFGD 94 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLREIKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 >gi|227508228|ref|ZP_03938277.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192457|gb|EEI72524.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 244 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 D G +++ RK N TQ ++A + V+ +EN ++ + + + Sbjct: 2 DFGEQLQIRRKQLNLTQAQLAQKLHVTRQTVSRWENNATYPNLDILVEMSDF 53 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 G +L+ RK ++Q + + L + T+S +E T P + ++ Sbjct: 1 MDFGEQLQIRRKQLNLTQAQLAQKLHVTRQTVSRWENNATYPNLDILVEMSDF 53 >gi|251794117|ref|YP_003008848.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247541743|gb|ACS98761.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R++ RK TQ+E+A + + E G R + + N IS++ + Sbjct: 5 QLAQRVRAFRKLKGYTQQELAKVLGVSVAVLGSLERGTRKPDARLMMNIANTLGISYEEL 64 Query: 91 YDGEV 95 D E Sbjct: 65 MDTES 69 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + + R+++ RK KG +Q E K+LG+ + L + E+G P+ + I Sbjct: 1 MENHQLAQRVRAFRKLKGYTQQELAKVLGVSVAVLGSLERGTRKPDARLMMNIANTLGIS 60 Query: 169 LDWIY 173 + + Sbjct: 61 YEELM 65 >gi|163746322|ref|ZP_02153680.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] gi|161380207|gb|EDQ04618.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A L++IRK + ++ + + L +S E+ + P I R+I +V + + FG Sbjct: 19 ADLRAIRKGRKLTLTDMAEALDRSVGWVSQVERDISTPSIADLRRIAEVLGVPIS-LLFG 77 Query: 176 DEVIVPKS 183 + + P+ Sbjct: 78 EATVPPEE 85 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G ++ IRK T +MA ++ V+ E + + SI + + Sbjct: 15 RSLGADLRAIRKGRKLTLTDMAEALDRSVGWVSQVERDISTPSIADLRRIAEVLGVPIS- 73 Query: 90 IYDGEVIDRRYED 102 + GE E Sbjct: 74 LLFGEATVPPEER 86 >gi|162453255|ref|YP_001615622.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] gi|161163837|emb|CAN95142.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] Length = 186 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 27/65 (41%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + IK +R+A TQ+++A A + E+G + ++ ++S Sbjct: 6 ELAGRLAKNIKQLREARGLTQQQLAKLAGVPRATWAHLESGAANPTLGVLHRAAAALQVS 65 Query: 87 FDWIY 91 + + Sbjct: 66 IEEML 70 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K +R+ +G++Q + KL G+P +T ++ E G P + + + ++ + Sbjct: 13 KNIKQLREARGLTQQQLAKLAGVPRATWAHLESGAANPTLGVLHRAAAALQVSIEEML 70 >gi|160939146|ref|ZP_02086497.1| hypothetical protein CLOBOL_04040 [Clostridium bolteae ATCC BAA-613] gi|158438109|gb|EDP15869.1| hypothetical protein CLOBOL_04040 [Clostridium bolteae ATCC BAA-613] Length = 66 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + +Q+E+A + + E G + ++ L + + D ++ E Sbjct: 7 KMKAARAGMDLSQEELAELVGVTRQTIGMIEAGKYNPTLNLCLAICKALHKTLDELFWEE 66 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K+ R +SQ E +L+G+ T+ E G+ P + I + K LD +++ + Sbjct: 8 MKAARAGMDLSQEELAELVGVTRQTIGMIEAGKYNPTLNLCLAICKALHKTLDELFWEE 66 >gi|110677608|ref|YP_680615.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453724|gb|ABG29929.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 187 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 35/99 (35%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + R+KD R+ + +A + S V+ E G S +I L Sbjct: 1 MADDRDDILGQLPARLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLT 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 ++ F + D + E + + +G L+ Sbjct: 61 RALQVDFAGLLDVASTQSKIETLRSADVPTIENLGKGLR 99 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ARLK R+ +G+S KL G+ S +S E+G + P I + + + + Sbjct: 13 PARLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLL 71 >gi|29830555|ref|NP_825189.1| DNA-binding protein [Streptomyces avermitilis MA-4680] gi|29607667|dbj|BAC71724.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680] Length = 158 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R++ + +++A A ++ E G+ S + IS + + Sbjct: 8 NLGEYLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 11 EYLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 68 >gi|71280362|ref|YP_267902.1| DNA-binding protein [Colwellia psychrerythraea 34H] gi|71146102|gb|AAZ26575.1| DNA-binding protein [Colwellia psychrerythraea 34H] Length = 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + TQ ++A +N E G S+ A + + + I+ Sbjct: 3 NRLKVLRAERDWTQAQLASALEVSRQTINAIEKGKFDPSLPLAFKAARLFNLMIEDIFHD 62 Query: 94 EVI 96 EV Sbjct: 63 EVE 65 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + L + T++ E+G+ P + A K ++ ++ I+ Sbjct: 1 MKNRLKVLRAERDWTQAQLASALEVSRQTINAIEKGKFDPSLPLAFKAARLFNLMIEDIF 60 Query: 174 FGD 176 + Sbjct: 61 HDE 63 >gi|52142641|ref|YP_084188.1| transcriptional regulator [Bacillus cereus E33L] gi|51976110|gb|AAU17660.1| possible transcriptional regulator/TPR domain protein [Bacillus cereus E33L] Length = 423 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI+ +R TQ E+ G + ++ E+G + S + + + E+ D++ Sbjct: 2 EIGERIRHVRMQKGLTQGELVSGI-CSITYLSRIESGKITPSSSFIQKVSKKLEVKSDYL 60 Query: 91 YDG--EVIDRRYEDVTNKKRLDPYAIGARL 118 +G E I ++ NK + D A L Sbjct: 61 INGNYEEIKITIFNICNKYKKDKSITEADL 90 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R++ +R KG++Q E + G+ + LS E G+ P +K+ + + D Sbjct: 1 MEIGERIRHVRMQKGLTQGEL--VSGICSITYLSRIESGKITPSSSFIQKVSKKLEVKSD 58 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 ++ G+ + +I KS + Sbjct: 59 YLINGNYEEIKITIFNICNKYKKDKSITE 87 >gi|239981569|ref|ZP_04704093.1| DNA-binding protein [Streptomyces albus J1074] Length = 285 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +++A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDH 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHSFGD 94 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ KGM+ + + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 >gi|162147757|ref|YP_001602218.1| HTH-type transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209542381|ref|YP_002274610.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786334|emb|CAP55916.1| putative HTH-type transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530058|gb|ACI49995.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 80 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 25/75 (33%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI R T++ +A + E G S+ AL + + D ++ Sbjct: 3 NRIAMFRAERGLTRRALAEAVEVNPQTIGYLERGDYKPSLELALKICRVLGVEVDMVFSL 62 Query: 94 EVIDRRYEDVTNKKR 108 E + E + R Sbjct: 63 EPFESVAEQMRRAMR 77 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+ R ++G+++ + + + T+ E+G P ++ A KI +V +D ++ Sbjct: 1 MHNRIAMFRAERGLTRRALAEAVEVNPQTIGYLERGDYKPSLELALKICRVLGVEVDMVF 60 Query: 174 FGD 176 + Sbjct: 61 SLE 63 >gi|22538150|ref|NP_689001.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76799144|ref|ZP_00781328.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77408029|ref|ZP_00784778.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|22535058|gb|AAN00874.1|AE014282_16 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76585496|gb|EAO62070.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77173391|gb|EAO76511.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 99 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Query: 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 TQ E+A N + + + +E+G ++ + L N +++ D++ + + Sbjct: 18 KKLTQTELASKLNISQKSYSNWESGKAEPTLDNIIKLANILDVTVDYLL---GRSDNFSN 74 Query: 103 VTNKKRLDPYAIGARLKSIRKDK 125 + + + RLK +R +K Sbjct: 75 TIVLSKNNMKSFSKRLKELRLEK 97 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 128 SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 +Q E L + + SN+E G+ P + K+ + +D++ + + Sbjct: 21 TQTELASKLNISQKSYSNWESGKAEPTLDNIIKLANILDVTVDYLLGRSDNFSNTIVLSK 80 Query: 188 KGNQSSKKSKKDKK 201 +S K K+ + Sbjct: 81 NNMKSFSKRLKELR 94 >gi|325696215|gb|EGD38106.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] Length = 180 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK+IR+ +Q+ +A + +ENG+ A L N + + ++ Sbjct: 2 NRIKEIRQKEGLSQQALAKKIGVSYRTIQNWENGVNQIKPDKAQQLANFFRVGVGYLLGY 61 Query: 94 EVIDRRYEDVTNKKRL 109 ++ + KK + Sbjct: 62 NDEEKEKQITKAKKAI 77 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K IR+ +G+SQ K +G+ T+ N+E G + A+++ + + ++ Sbjct: 1 MNRIKEIRQKEGLSQQALAKKIGVSYRTIQNWENGVNQIKPDKAQQLANFFRVGVGYLLG 60 Query: 175 GDEVIVPKSIKRAK 188 ++ K I +AK Sbjct: 61 YNDEEKEKQITKAK 74 >gi|323463421|gb|ADX75574.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 182 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 33/85 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + V ++ R+A+ + ++A ++ ++ E G+ + SI + N Sbjct: 1 MENINTVVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGVANPSINTLWKIANGLR 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 I + E + D ++ + + Sbjct: 61 IPLTSLISEENEAIQKIDRSDIQPI 85 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + L+ R+ +S + +L G+ + +S E+G P I KI + L + Sbjct: 7 VVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGVANPSINTLWKIANGLRIPLTSL 66 Query: 173 YFGDEVIVPK 182 + + K Sbjct: 67 ISEENEAIQK 76 >gi|304438972|ref|ZP_07398895.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372638|gb|EFM26221.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 68 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++IRK+ TQ+E+A + ENG + SI A + ++++ + I+ Sbjct: 3 NRLEEIRKSRGITQEELANILEVSRQTIGSLENGRYNPSIILAFKIAKFFKLTIEDIFIY 62 Query: 94 EVIDRR 99 E + Sbjct: 63 EEEENE 68 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK +G++Q E +L + T+ + E GR P I A KI + K ++ I+ Sbjct: 1 MKNRLEEIRKSRGITQEELANILEVSRQTIGSLENGRYNPSIILAFKIAKFFKLTIEDIF 60 Query: 174 FGDEVIVP 181 +E Sbjct: 61 IYEEEENE 68 >gi|304407873|ref|ZP_07389524.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304343356|gb|EFM09199.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 95 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI IRK TQ+++A ++++ E S L + +++ I+ Sbjct: 8 IGNRISRIRKHRGITQQQLADALGIDRASLSQIETCRYSPRAETIRKLSDFFQLPIGDIF 67 Query: 92 DGEVIDRRYEDVTN 105 +++ + + + Sbjct: 68 FNPLLEADRDRLID 81 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R+ IRK +G++Q + LG+ ++LS E R P + RK+ + + I Sbjct: 7 AIGNRISRIRKHRGITQQQLADALGIDRASLSQIETCRYSPRAETIRKLSDFFQLPIGDI 66 Query: 173 YF 174 +F Sbjct: 67 FF 68 >gi|290959392|ref|YP_003490574.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260648918|emb|CBG72032.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 156 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 8 NLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R++ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 11 EYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 68 >gi|254824677|ref|ZP_05229678.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|255520244|ref|ZP_05387481.1| transcriptional regulator (phage-related) protein [Listeria monocytogenes FSL J1-175] gi|293593916|gb|EFG01677.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] Length = 131 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D++ + I ++ Sbjct: 61 DYLLGQQSIPTYAPSELQNEK 81 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P+++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATLYDVSVDYLL- 64 Query: 175 GDEVIVPKSIKRAKGNQSSKKS 196 G + I + + + K Sbjct: 65 GQQSIPTYAPSELQNEKDIGKR 86 >gi|152982219|ref|YP_001352353.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282296|gb|ABR90706.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 198 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R T ++A A ES ++ E G + S+ L + + + Sbjct: 23 LGVRLRHTRLVAGLTLIQLAKKAECSESLISKIERGSATPSLAMLHRLAVALDSNISSLM 82 Query: 92 DGEVI 96 E+ Sbjct: 83 SEEMP 87 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+ R G++ I+ K S +S E+G P + ++ ++ + + Sbjct: 27 LRHTRLVAGLTLIQLAKKAECSESLISKIERGSATPSLAMLHRLAVALDSNISSLMSEE 85 >gi|86139426|ref|ZP_01057995.1| DNA binding protein, putative [Roseobacter sp. MED193] gi|85823929|gb|EAQ44135.1| DNA binding protein, putative [Roseobacter sp. MED193] Length = 188 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+K+ R+A + + +A + S V+ E G S +I L ++ F + + Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ARLK R+ +G+S L G+ S +S E+G + P I + + + + Sbjct: 13 PARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL 71 >gi|330890951|gb|EGH23612.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] Length = 182 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGGRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLDWIYFGD 176 L+SIRK KG+SQ E K G+ NST+S E+ P I RK V + + F Sbjct: 7 LQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMSMVEFFS 63 Query: 177 EVIVPKS 183 E VP++ Sbjct: 64 EETVPEN 70 >gi|330812572|ref|YP_004357034.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380680|gb|AEA72030.1| putative transcription regulator, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 182 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WI-YFGDEVIVPKSIK 185 + +F +E++ K + Sbjct: 58 MVEFFSEEILQEKPTQ 73 >gi|322804615|emb|CBZ02167.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 181 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I+++RK N T K+++ S ++ EN S +I + + + + Sbjct: 4 EIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIGDALNVPITYF 63 Query: 91 YD 92 + Sbjct: 64 FK 65 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +++++RK+K ++ + + G+ S LS E + I +KI + + Sbjct: 3 NEIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIGDALNVPITY 62 Query: 172 IYFGDEV--IVPKSIKRAKGNQSSKKSKKDKKSSN 204 + E+ + K +R SK K S N Sbjct: 63 FFKSPELHKFLVKKQEREVFELEGSSSKFIKLSGN 97 >gi|303229713|ref|ZP_07316499.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] gi|302515610|gb|EFL57566.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] Length = 127 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN--GMCSTSIRYALYLR 80 P+ +Q + +G +I +R + +Q+++A S ++ E G+ SI + Sbjct: 19 PKFQQQYMCLGHKISTLRTSMGISQRQLADVVGISRSYLSKLECGYGISGVSIEVVFKIA 78 Query: 81 NEYEISFDWIYDGEVIDRR 99 +S + D + Sbjct: 79 YCLNVSTSQLLHLRTQDYK 97 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI--PEIKPARKIKQVT 165 + +G ++ ++R G+SQ + ++G+ S LS E G I I+ KI Sbjct: 22 QQQYMCLGHKISTLRTSMGISQRQLADVVGISRSYLSKLECGYGISGVSIEVVFKIAYCL 81 Query: 166 KKHLDWIY 173 + Sbjct: 82 NVSTSQLL 89 >gi|295133936|ref|YP_003584612.1| prophage LambdaCh01, repressor protein [Zunongwangia profunda SM-A87] gi|294981951|gb|ADF52416.1| putative prophage LambdaCh01, repressor protein [Zunongwangia profunda SM-A87] Length = 251 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 28/90 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I+ IR +Q+ A + +E I + + N + I+ D + Sbjct: 4 FGKNIRKIRNVKKLSQQAFAELFELKRGTLGAYEEERSEPRIETIIKIANHFSITIDDLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E+ + + L + I Sbjct: 64 TQELTVNKLLKFKDDLALQGSFHKEKFAEI 93 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 1/95 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G ++ IR K +SQ F +L + TL YE+ R+ P I+ KI +D Sbjct: 1 MSHFGKNIRKIRNVKKLSQQAFAELFELKRGTLGAYEEERSEPRIETIIKIANHFSITID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + E+ V K +K K+K + P Sbjct: 61 DLLT-QELTVNKLLKFKDDLALQGSFHKEKFAEIP 94 >gi|291526790|emb|CBK92376.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 109 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG IK +R N T++ +A S + +ENG + SI + + +++ + I Sbjct: 7 QVGIVIKSLRIQRNLTKEALAAELGISVSTIKKYENGERALSITNLFKIIDYFKVDANTI 66 Query: 91 YDGEVIDRRYEDVTNKKRLDP 111 + + + + +D Sbjct: 67 LNVAEGKKENSIDSRLELMDY 87 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 36/98 (36%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + D Y +G +KS+R + +++ LG+ ST+ YE G I KI K Sbjct: 1 MKYDGYQVGIVIKSLRIQRNLTKEALAAELGISVSTIKKYENGERALSITNLFKIIDYFK 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + I E SI + +K N Sbjct: 61 VDANTILNVAEGKKENSIDSRLELMDYSRKAYFQKIFN 98 >gi|225026220|ref|ZP_03715412.1| hypothetical protein EUBHAL_00461 [Eubacterium hallii DSM 3353] gi|238925886|ref|YP_002939404.1| hypothetical protein EUBREC_3544 [Eubacterium rectale ATCC 33656] gi|224956471|gb|EEG37680.1| hypothetical protein EUBHAL_00461 [Eubacterium hallii DSM 3353] gi|238877563|gb|ACR77270.1| Hypothetical protein EUBREC_3544 [Eubacterium rectale ATCC 33656] gi|291528305|emb|CBK93891.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] gi|291545569|emb|CBL18677.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] gi|291551051|emb|CBL27313.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 66 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +KDIR+ N Q ++A + E G + S+ A+ L + ++ + I+ Sbjct: 3 INNTLKDIREERNLIQADLAEAIGSCSQTIGRIERGERNPSLEIAIRLAHYLKVPVEDIF 62 Query: 92 DGEV 95 E Sbjct: 63 QVED 66 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AI LK IR+++ + Q + + +G + T+ E+G P ++ A ++ K ++ Sbjct: 1 MAINNTLKDIREERNLIQADLAEAIGSCSQTIGRIERGERNPSLEIAIRLAHYLKVPVED 60 Query: 172 IYFGDE 177 I+ ++ Sbjct: 61 IFQVED 66 >gi|215430004|ref|ZP_03427923.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289753196|ref|ZP_06512574.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289693783|gb|EFD61212.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 486 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 21 ITPEIRQYWKDV-GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + P R Y + G R++ +R+ TQ +A + S VN EN ++ L L Sbjct: 6 VLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLL 65 Query: 80 RNEYEISFDWI 90 +++S + Sbjct: 66 TERFDLSAQYF 76 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GARL+ +R+++G++Q+ K L + S ++ E + + + + + Sbjct: 17 FSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYF 76 >gi|218529168|ref|YP_002419984.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218521471|gb|ACK82056.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 142 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 7/142 (4%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 ++ + + VG RI +RKA +Q + V +E G + Sbjct: 1 MMPKQTTDVDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLREI 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI-------RKDKGMSQIEF 132 E+ ++ E L + L++ + + ++ + Sbjct: 61 ARLLEVPVSAFFEEGDGAAAQEQTEVFGFLRAHGAVDLLRAFATIEDDQMRREVLAIVRS 120 Query: 133 GKLLGMPNSTLSNYEQGRTIPE 154 LG E T P Sbjct: 121 AARLGRKKDPEVVVEAVETRPT 142 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 28/56 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++RK +G+SQ G +G+ + YE+G+ R+I ++ + + + Sbjct: 17 ITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLREIARLLEVPVSAFF 72 >gi|149916489|ref|ZP_01905006.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149809591|gb|EDM69447.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 435 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI++ R N Q E+A S +NL E+ + + + L E+ + Sbjct: 7 IGTRIRERRVMNGIRQSELAKMVGISPSYLNLIEHNRRRIAGKTLIKLAEVLEVEPSALS 66 Query: 92 DG 93 +G Sbjct: 67 EG 68 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 43/88 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R++ R G+ Q E K++G+ S L+ E R K K+ +V + + Sbjct: 6 MIGTRIRERRVMNGIRQSELAKMVGISPSYLNLIEHNRRRIAGKTLIKLAEVLEVEPSAL 65 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 G EV + +++ A G+Q+ + + ++ Sbjct: 66 SEGAEVTLIAALREAAGSQTGIRVETER 93 >gi|15608269|ref|NP_215645.1| transcriptional regulator protein [Mycobacterium tuberculosis H37Rv] gi|15840567|ref|NP_335604.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31792323|ref|NP_854816.1| transcriptional regulator protein [Mycobacterium bovis AF2122/97] gi|121637061|ref|YP_977284.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660915|ref|YP_001282438.1| putative transcriptional regulator protein [Mycobacterium tuberculosis H37Ra] gi|148822343|ref|YP_001287097.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167969266|ref|ZP_02551543.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|215402959|ref|ZP_03415140.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215410750|ref|ZP_03419558.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215426424|ref|ZP_03424343.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215445295|ref|ZP_03432047.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218752816|ref|ZP_03531612.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219557015|ref|ZP_03536091.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224989534|ref|YP_002644221.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253799830|ref|YP_003032831.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254231403|ref|ZP_04924730.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C] gi|254364034|ref|ZP_04980080.1| hypothetical transcriptional regulator protein [Mycobacterium tuberculosis str. Haarlem] gi|254550127|ref|ZP_05140574.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186058|ref|ZP_05763532.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260200171|ref|ZP_05767662.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260204374|ref|ZP_05771865.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289442559|ref|ZP_06432303.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289446719|ref|ZP_06436463.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289555084|ref|ZP_06444294.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289569125|ref|ZP_06449352.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289573782|ref|ZP_06454009.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289744873|ref|ZP_06504251.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289749665|ref|ZP_06509043.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289757219|ref|ZP_06516597.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|289761269|ref|ZP_06520647.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|294993308|ref|ZP_06798999.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297633669|ref|ZP_06951449.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297730656|ref|ZP_06959774.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298524627|ref|ZP_07012036.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|306775285|ref|ZP_07413622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306781801|ref|ZP_07420138.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306788203|ref|ZP_07426525.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306792532|ref|ZP_07430834.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306967199|ref|ZP_07479860.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|307079114|ref|ZP_07488284.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307083678|ref|ZP_07492791.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313657986|ref|ZP_07814866.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|2117223|emb|CAB09040.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13880746|gb|AAK45418.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31617911|emb|CAD94021.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium bovis AF2122/97] gi|121492708|emb|CAL71177.1| Probable transcriptional regulator protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600462|gb|EAY59472.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C] gi|134149548|gb|EBA41593.1| hypothetical transcriptional regulator protein [Mycobacterium tuberculosis str. Haarlem] gi|148505067|gb|ABQ72876.1| putative transcriptional regulator protein [Mycobacterium tuberculosis H37Ra] gi|148720870|gb|ABR05495.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224772647|dbj|BAH25453.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321333|gb|ACT25936.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289415478|gb|EFD12718.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289419677|gb|EFD16878.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289439716|gb|EFD22209.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289538213|gb|EFD42791.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289542879|gb|EFD46527.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289685401|gb|EFD52889.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289690252|gb|EFD57681.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289708775|gb|EFD72791.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|289712783|gb|EFD76795.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|298494421|gb|EFI29715.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|308216217|gb|EFO75616.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308325442|gb|EFP14293.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308335215|gb|EFP24066.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339022|gb|EFP27873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308355148|gb|EFP43999.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308363022|gb|EFP51873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308366671|gb|EFP55522.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323720411|gb|EGB29505.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326904644|gb|EGE51577.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328459575|gb|AEB04998.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 486 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 21 ITPEIRQYWKDV-GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + P R Y + G R++ +R+ TQ +A + S VN EN ++ L L Sbjct: 6 VLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLL 65 Query: 80 RNEYEISFDWI 90 +++S + Sbjct: 66 TERFDLSAQYF 76 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GARL+ +R+++G++Q+ K L + S ++ E + + + + + Sbjct: 17 FSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYF 76 >gi|332523855|ref|ZP_08400107.1| putative HTH-type transcriptional regulator PrtR [Streptococcus porcinus str. Jelinkova 176] gi|332315119|gb|EGJ28104.1| putative HTH-type transcriptional regulator PrtR [Streptococcus porcinus str. Jelinkova 176] Length = 230 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 28/58 (48%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G ++K IR+ +Q+ ++ + ++ +E G + + ++ L + +S D+ Sbjct: 4 GKQLKAIRQKEKMSQENLSDQIGVSKMTISNWEQGKNNPNQKHLAQLVAIFRVSEDYF 61 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 38/81 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK+IR+ + MSQ +G+ T+SN+EQG+ P K ++ + + D+ Sbjct: 1 MFSGKQLKAIRQKEKMSQENLSDQIGVSKMTISNWEQGKNNPNQKHLAQLVAIFRVSEDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 +++P + + Sbjct: 61 FNSYSTILIPYKQLNSDNQKK 81 >gi|327439445|dbj|BAK15810.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 133 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + +G +IKD R +Q ++A ++V+ +E G + + + Sbjct: 2 EKAELLNFIGNKIKDYRLKKKYSQADLAKLIGVTNTSVSEYERGKVNIDADTLFQIADVL 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNK 106 E D + D D+ N+ Sbjct: 62 EAKVDDFFPARKSDSEPIDLMNE 84 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K R K SQ + KL+G+ N+++S YE+G+ + +I V + +D Sbjct: 8 NFIGNKIKDYRLKKKYSQADLAKLIGVTNTSVSEYERGKVNIDADTLFQIADVLEAKVDD 67 Query: 172 IY 173 + Sbjct: 68 FF 69 >gi|313680627|ref|YP_004058366.1| helix-turn-helix domain protein [Oceanithermus profundus DSM 14977] gi|313153342|gb|ADR37193.1| helix-turn-helix domain protein [Oceanithermus profundus DSM 14977] Length = 130 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 22/61 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R +++RK K++A ++ E + S+ L Y +S + Sbjct: 2 KLAERFRELRKERGWRLKDVAEATGLSIPYLSDLERDRTNPSLETLRTLAEAYGMSVHDL 61 Query: 91 Y 91 Sbjct: 62 M 62 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R + +RK++G + + G+ LS+ E+ RT P ++ R + + + Sbjct: 1 MKLAERFRELRKERGWRLKDVAEATGLSIPYLSDLERDRTNPSLETLRTLAEAYGMSVHD 60 Query: 172 IY 173 + Sbjct: 61 LM 62 >gi|298492312|ref|YP_003722489.1| XRE family molybdate metabolism transcriptional regulator ['Nostoc azollae' 0708] gi|298234230|gb|ADI65366.1| transcriptional regulator of molybdate metabolism, XRE family ['Nostoc azollae' 0708] Length = 377 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K IR +Q+E+A A ++ E+G+ + S+ +L L + ++ Sbjct: 9 NNLKSIRTRLGMSQQELANLAAVTRQTISGVESGLYAPSVAISLRLAKALGCQVEELFWL 68 Query: 94 E 94 E Sbjct: 69 E 69 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LKSIR GMSQ E L + T+S E G P + + ++ + ++ Sbjct: 5 NHLRNNLKSIRTRLGMSQQELANLAAVTRQTISGVESGLYAPSVAISLRLAKALGCQVEE 64 Query: 172 IYFGD 176 +++ + Sbjct: 65 LFWLE 69 >gi|269958434|ref|YP_003328221.1| putative transcriptional regulator [Anaplasma centrale str. Israel] gi|269848263|gb|ACZ48907.1| putative transcriptional regulator [Anaplasma centrale str. Israel] Length = 187 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 2/101 (1%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKD--VGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 F+ + ++ +I+ + R + D VG IK R +Q ++A V Sbjct: 2 FMTSRTQNQSSIPIIVGGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQK 61 Query: 64 FENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 +E G I L I + D R T Sbjct: 62 YEKGTNRIVISRLYELARVLGIEIKDLISKLQNDLRSITDT 102 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R KGMSQ + LG+ + YE+G I ++ +V + + Sbjct: 34 IKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89 >gi|209964814|ref|YP_002297729.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209958280|gb|ACI98916.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 232 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 4/118 (3%) Query: 13 SLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 + + V +RI+ R +Q ++A V +E G S Sbjct: 2 PRRTKNAAVAALESVIESHVASRIRLRRGLLGMSQSDLARTLGITFQQVQKYERGSNRVS 61 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS----IRKDKG 126 + L ++ + +DG + + + +R K Sbjct: 62 VGKLYRLAEILDVPLTFFFDGLDLPDLKKPPQTTTGFAEQQSPILSRRELDLLRAWKN 119 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 33/81 (40%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + V + + + +R++ R GMSQ + + LG+ + YE+G Sbjct: 2 PRRTKNAAVAALESVIESHVASRIRLRRGLLGMSQSDLARTLGITFQQVQKYERGSNRVS 61 Query: 155 IKPARKIKQVTKKHLDWIYFG 175 + ++ ++ L + + G Sbjct: 62 VGKLYRLAEILDVPLTFFFDG 82 >gi|163733451|ref|ZP_02140894.1| DNA-binding protein, putative [Roseobacter litoralis Och 149] gi|161393239|gb|EDQ17565.1| DNA-binding protein, putative [Roseobacter litoralis Och 149] Length = 466 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 24/141 (17%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R TQK+ A +N EN S L L E+ + + + Sbjct: 9 GAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSE 68 Query: 93 GEVIDRRYED------VTNKKRLDPYAI------------GARLKSIRKDKGMSQIEFG- 133 G+ + + L P A A LK R + M Q Sbjct: 69 GDSERLVSDMREALADPVFAETLPPLADLRLAASNAPTFAHAFLKLHRNYRQM-QERLAS 127 Query: 134 --KLLGM--PNSTLSNYEQGR 150 + LG +T S +E+ R Sbjct: 128 LDEALGREDARATPSPWEEVR 148 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ +R G +Q +F LG+ L+ E + Q + Sbjct: 6 LYAGAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSEGDSERLVSDMREA 81 >gi|160895617|ref|YP_001561199.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361201|gb|ABX32814.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 227 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG +++ RK T +++A + S ++ E G + S L L N +I + Sbjct: 45 EVGAKLRKARKERGLTLQQVAESSGLAVSTISKAERGQIALSYEKVLMLGNALDIDMTRL 104 Query: 91 Y 91 + Sbjct: 105 F 105 Score = 43.4 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +GA+L+ RK++G++ + + G+ ST+S E+G+ + + + Sbjct: 44 HEVGAKLRKARKERGLTLQQVAESSGLAVSTISKAERGQIALSYEKVLMLGNALDIDMTR 103 Query: 172 IY 173 ++ Sbjct: 104 LF 105 >gi|111017888|ref|YP_700860.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110817418|gb|ABG92702.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 211 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 2/95 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI+ +R A + +A S ++ E G ++ + + + D + Sbjct: 29 IRQRIRGLRLARGWSLDVLAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQLV 88 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 E ++ + + L R G Sbjct: 89 --ESVEDEDVVIRPQPEHTRGLTIWLLSRERALHG 121 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 3/72 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++ +R +G S + STLS E G + I + LD + Sbjct: 28 VIRQRIRGLRLARGWSLDVLAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQL 87 Query: 173 YFGDEVIVPKSI 184 E + + + Sbjct: 88 V---ESVEDEDV 96 >gi|290891105|ref|ZP_06554167.1| hypothetical protein AWRIB429_1557 [Oenococcus oeni AWRIB429] gi|290479069|gb|EFD87731.1| hypothetical protein AWRIB429_1557 [Oenococcus oeni AWRIB429] Length = 142 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 19/127 (14%) Query: 34 TRIKDIRKANNKTQKEMAIGANQ---------LESAVNLFENGMCSTSIRYALYLRNEYE 84 R++ +R+ T K++A N+ ES + +E G + + L + ++ Sbjct: 4 ERLRALRRGKGITLKQLAKALNKNISRGEAKNTESQIGNWERGERNPNYLEVKKLADYFD 63 Query: 85 ISFDWIYDGEVIDRRYEDVT---------NKKRLDPYAIGARLKSIRKDKG-MSQIEFGK 134 +S D++ D+ N LD L+ I + G Sbjct: 64 VSIDYLVGRYNNDQVDLAKAMITSSKLTYNDTPLDNNDKYEILQLISGYLHARGRRSTGD 123 Query: 135 LLGMPNS 141 L+ + + Sbjct: 124 LININHQ 130 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLG--MPN-------STLSNYEQGRTIPEIKPARKIKQ 163 RL+++R+ KG++ + K L + S + N+E+G P +K+ Sbjct: 1 MFPERLRALRRGKGITLKQLAKALNKNISRGEAKNTESQIGNWERGERNPNYLEVKKLAD 60 Query: 164 VTKKHLDWIY 173 +D++ Sbjct: 61 YFDVSIDYLV 70 >gi|148252332|ref|YP_001236917.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404505|gb|ABQ33011.1| transcriptional regulator, XRE family with shikimate kinase activity [Bradyrhizobium sp. BTAi1] Length = 306 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 26/161 (16%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G R++ +R ++K +A + E + E+G + SI + N Sbjct: 17 ETDFLDQLGQRVRRMRGLAGMSRKVLAQVSGISERYIAQLESGKGNVSIVLLRRIANAIN 76 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI----------RKDKGMSQ----- 129 D I G + + + + + A +K + R G++ Sbjct: 77 APLDDIIPGSEPSPDWPVIRDLLKKASPSQIAEVKDLLAGGASAPLRRSFSGIALIGLRG 136 Query: 130 -------IEFGKLLGMPNSTLSN-YEQGRTIPEIKPARKIK 162 + +G L+ E+ + A I Sbjct: 137 AGKSTLGKMLAERIGWSFVELNKEIERQNG---LSVAEIIA 174 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R GMS+ ++ G+ ++ E G+ I R+I LD I G Sbjct: 26 QRVRRMRGLAGMSRKVLAQVSGISERYIAQLESGKGNVSIVLLRRIANAINAPLDDIIPG 85 Query: 176 DEVIVP 181 E Sbjct: 86 SEPSPD 91 >gi|15600494|ref|NP_253988.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116053448|ref|YP_793775.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894404|ref|YP_002443274.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254238004|ref|ZP_04931327.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719] gi|254243812|ref|ZP_04937134.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192] gi|296392160|ref|ZP_06881635.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313106725|ref|ZP_07792942.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9951617|gb|AAG08686.1|AE004943_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115588669|gb|ABJ14684.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169935|gb|EAZ55446.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719] gi|126197190|gb|EAZ61253.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192] gi|218774633|emb|CAW30450.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310879444|gb|EFQ38038.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 182 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK 49 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KH 168 +GARL++IRK KG+SQ E K G+ NST+S E+ P I +K V Sbjct: 1 MDVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK---VLGGIPMS 57 Query: 169 LDWIYFGD 176 L + D Sbjct: 58 LVEFFSLD 65 >gi|313114035|ref|ZP_07799589.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623655|gb|EFQ07056.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 147 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 40/96 (41%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 L L +I E R+ + RI+ +RK TQ++ A N + + + ENG + Sbjct: 2 LTQLDLRNIIRIEENRKEVNKMNARIEAVRKHEGLTQEQFADRINLSRNYLWMLENGSRT 61 Query: 71 TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 S R + E+ + W+ GE + + + Sbjct: 62 PSDRTISDICREFGVREAWLRTGEGEMFVQDTQSEQ 97 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 42/107 (39%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 D R + R + + AR++++RK +G++Q +F + + + L E G P + Sbjct: 6 DLRNIIRIEENRKEVNKMNARIEAVRKHEGLTQEQFADRINLSRNYLWMLENGSRTPSDR 65 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 I + W+ G+ + + + + KD + Sbjct: 66 TISDICREFGVREAWLRTGEGEMFVQDTQSEQVAAFLADLTKDDSDT 112 >gi|308186781|ref|YP_003930912.1| hypothetical protein Pvag_1273 [Pantoea vagans C9-1] gi|308057291|gb|ADO09463.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 185 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 32/87 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + + ++ +R+AN + A ++ + E G S ++ + + Sbjct: 1 MADFQQHLSGALRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDP 111 + F + DG + ++ D Sbjct: 61 VPFSFFIDGSALPSGTLPGFSQPNADM 87 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ G S + G+ + L E+G + P + KI + G Sbjct: 12 LRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFFIDG 69 >gi|229593332|ref|YP_002875451.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|312963834|ref|ZP_07778305.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|229365198|emb|CAY53478.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|311281869|gb|EFQ60479.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 182 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WI-YFGDEVIVPKSIK 185 + +F +E++ + Sbjct: 58 MVEFFSEEILQEIPTQ 73 >gi|182627296|ref|ZP_02954983.1| transcriptional regulator, Cro/CI family [Clostridium perfringens D str. JGS1721] gi|177907288|gb|EDT70020.1| transcriptional regulator, Cro/CI family [Clostridium perfringens D str. JGS1721] Length = 78 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 34/75 (45%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ +++ +++G IK R+ T K+++ + ++ E+G+ + L Sbjct: 4 ILEEYLKETIQNIGENIKKRRQRKKWTLKQLSKKSGVGIKTIHDIESGINKPTKNTLYKL 63 Query: 80 RNEYEISFDWIYDGE 94 + I+ D + G+ Sbjct: 64 SRGFGITIDELVYGK 78 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K R+ K + + K G+ T+ + E G P K+ + +D + +G Sbjct: 18 ENIKKRRQRKKWTLKQLSKKSGVGIKTIHDIESGINKPTKNTLYKLSRGFGITIDELVYG 77 Query: 176 D 176 Sbjct: 78 K 78 >gi|150019804|ref|YP_001312058.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149906269|gb|ABR37102.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 247 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G IK R QKE A S + +EN + + + I D + Sbjct: 3 FGNNIKKCRLDKGINQKEFAKILGIPVSTLANYENNHREPKTEILIKIADALLIPIDELL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPY 112 D E +T+ +++ Sbjct: 63 DSETTSFSSNLITSMLQMEHI 83 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 37/73 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G +K R DKG++Q EF K+LG+P STL+NYE P+ + KI +D Sbjct: 1 MSFGNNIKKCRLDKGINQKEFAKILGIPVSTLANYENNHREPKTEILIKIADALLIPIDE 60 Query: 172 IYFGDEVIVPKSI 184 + + ++ Sbjct: 61 LLDSETTSFSSNL 73 >gi|309798569|ref|ZP_07692844.1| conserved domain protein [Streptococcus infantis SK1302] gi|322387445|ref|ZP_08061055.1| transcriptional regulator [Streptococcus infantis ATCC 700779] gi|308117805|gb|EFO55206.1| conserved domain protein [Streptococcus infantis SK1302] gi|321141974|gb|EFX37469.1| transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R + M+Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MAKNLKLKLARVELDMTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVELDMTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 >gi|259503565|ref|ZP_05746467.1| xre family toxin-antitoxin system [Lactobacillus antri DSM 16041] gi|259168478|gb|EEW52973.1| xre family toxin-antitoxin system [Lactobacillus antri DSM 16041] Length = 108 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 RL +R++KG S+ K +G+ T +N+E GRT P+ K KI ++ Sbjct: 1 MSEFNTRLTDLRENKGWSKTYVAKAVGLKSMQTYANWEYGRTEPDFKMLTKIAKLFDVST 60 Query: 170 DWIYFGDEVIVPKSIKRAKGNQS-----SKKSKKDKK 201 D++ G++ PK A K S +D K Sbjct: 61 DYLLSGNKDKQPKEADLADQETVFTYEGEKISSEDLK 97 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 1/85 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ D+R+ ++ +A +E G + + +++S D++ G Sbjct: 7 RLTDLRENKGWSKTYVAKAVGLKSMQTYANWEYGRTEPDFKMLTKIAKLFDVSTDYLLSG 66 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + E + G ++ Sbjct: 67 NKDKQPKEADLADQETVFTYEGEKI 91 >gi|228996851|ref|ZP_04156485.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] gi|228762912|gb|EEM11825.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] Length = 404 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ YL ++ E ++ Sbjct: 4 LGEKIKALRKEKRLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + ++ + Sbjct: 63 EEDNEEVAKLLPKMEQAIKHKKFEE 87 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + + + ++ Sbjct: 6 EKIKALRKEKRLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D V K + + + KK ++ + P Sbjct: 65 DNEEVAKLLPKMEQAIKHKKFEEVYHTLLP 94 >gi|162148230|ref|YP_001602691.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786807|emb|CAP56390.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 475 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+ +R + +Q+ +A S +NL E+ S + + L ++S + + Sbjct: 6 IGYIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVSIEAL 64 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + P IG ++ +R ++ +SQ LG+ S L+ E + K+ + Sbjct: 1 MAPTRIGYIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVS 60 Query: 169 LDWIYFGDE 177 ++ + DE Sbjct: 61 IEALSGVDE 69 >gi|158522721|ref|YP_001530591.1| XRE family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511547|gb|ABW68514.1| transcriptional regulator, XRE family [Desulfococcus oleovorans Hxd3] Length = 112 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 31/86 (36%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + K +G R+K++R A N Q+++ E G + S+ L + Sbjct: 2 DNELLKKRLGIRLKELRLAKNLKQEDIEKKHGFNYRYYGRLERGEINPSLETLNKLCEIF 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRL 109 ++S ++ D + + Sbjct: 62 DVSLAALFQFLNPDDKLSTERESISV 87 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R K + Q + K G E+G P ++ K+ ++ L ++ Sbjct: 14 LKELRLAKNLKQEDIEKKHGFNYRYYGRLERGEINPSLETLNKLCEIFDVSLAALF 69 >gi|270308504|ref|YP_003330562.1| DNA-binding protein [Dehalococcoides sp. VS] gi|270154396|gb|ACZ62234.1| DNA-binding protein [Dehalococcoides sp. VS] Length = 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +R NN TQ+E+A V E G S S+ A + ++ + + ++ Sbjct: 3 NKLKVLRAINNLTQEELADKLGITRQTVISIERGKYSPSLELAFKIAALFKTTIEEVFTY 62 Query: 94 EVI 96 Sbjct: 63 NTE 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK +R ++Q E LG+ T+ + E+G+ P ++ A KI + K ++ ++ Sbjct: 1 MQNKLKVLRAINNLTQEELADKLGITRQTVISIERGKYSPSLELAFKIAALFKTTIEEVF 60 Query: 174 F 174 Sbjct: 61 T 61 >gi|149203629|ref|ZP_01880598.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142746|gb|EDM30788.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 436 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI++ R N Q ++A A S +NL E+ + L L ++ + Sbjct: 7 IGTRIRERRVLNGMRQSDLAQRAGISPSYLNLIEHNHRRIGGKTLLKLAEALKVEPSQLT 66 Query: 92 DG 93 G Sbjct: 67 QG 68 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG R++ R GM Q + + G+ S L+ E K K+ + K Sbjct: 3 DRLMIGTRIRERRVLNGMRQSDLAQRAGISPSYLNLIEHNHRRIGGKTLLKLAEALKVEP 62 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + G E + ++ A G + + D+ Sbjct: 63 SQLTQGAEATLISGLREAAGKPRNDGPELDRTEE 96 >gi|126729053|ref|ZP_01744867.1| transcriptional regulator [Sagittula stellata E-37] gi|126710043|gb|EBA09095.1| transcriptional regulator [Sagittula stellata E-37] Length = 70 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K R TQ E+A +N ENG+ S AL L +S + ++ Sbjct: 11 LKVHRLKAGLTQMELANMVEVSRKTINTVENGVFVPSTTLALRLARCLGVSVEDLFT 67 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LK R G++Q+E ++ + T++ E G +P A ++ + ++ ++ Sbjct: 10 HLKVHRLKAGLTQMELANMVEVSRKTINTVENGVFVPSTTLALRLARCLGVSVEDLFT 67 >gi|52080997|ref|YP_079788.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52004208|gb|AAU24150.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] Length = 111 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 4/101 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK RK + E+A A +S ++ E + SI++ + ++S + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 Query: 91 YDGEV---IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + D + + D A G K R+ Sbjct: 62 LDEKDETEYDGQLDSEWENLVRDAMASGVSKKQFREFLDYQ 102 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K RK+KG S E + G+ S LS+ E+ +T P I+ K+ V + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 172 IYFGDEVIV 180 + + Sbjct: 61 LLDEKDETE 69 >gi|75762482|ref|ZP_00742345.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228901189|ref|ZP_04065390.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] gi|74490035|gb|EAO53388.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228858439|gb|EEN02898.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] Length = 122 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + K VG I+ +RK TQ+E+A N ++ + E G + S+ + E+S Sbjct: 7 FLKLVGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIAVGLEVSP 66 Query: 88 DWIYDGEVIDRRYEDVTN 105 + + + I+ Sbjct: 67 EKVLNLSNINLLENPQRE 84 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 25/55 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ +RK +G++Q E + + + + + E+G + +KI + + Sbjct: 13 ENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPE 67 >gi|313634226|gb|EFS00863.1| DNA-binding protein [Listeria seeligeri FSL N1-067] Length = 104 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|311064246|ref|YP_003970971.1| hypothetical protein BBPR_0856 [Bifidobacterium bifidum PRL2010] gi|310866565|gb|ADP35934.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum PRL2010] Length = 405 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 18/58 (31%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ R T E+A + A++ +E + L + Sbjct: 16 GEKLRKARLYRGLTLTELAEETGVSKQALSKYEKNQNEPTPSNLFALARSLNFPISYF 73 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 31/83 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +L+ R +G++ E + G+ LS YE+ + P + + + + Sbjct: 17 EKLRKARLYRGLTLTELAEETGVSKQALSKYEKNQNEPTPSNLFALARSLNFPISYFKIP 76 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 E V + ++ K K+ Sbjct: 77 SECFVQGDGTYFRSRTNTAKKKR 99 >gi|300172401|ref|YP_003771566.1| ABC transporter ATP-binding protein [Leuconostoc gasicomitatum LMG 18811] gi|299886779|emb|CBL90747.1| ABC transporter, ATP-binding protein [Leuconostoc gasicomitatum LMG 18811] Length = 296 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 28/66 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +R+ + +Q +A +V+ +E+G I + L + +++ G Sbjct: 7 SQLCLLRQKMSLSQDALAQKLYVSRQSVSKWEHGDAEPDIDKLISLAEILAVDLNFLLSG 66 Query: 94 EVIDRR 99 + + Sbjct: 67 QQSNEE 72 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 37/85 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++L +R+ +SQ + L + ++S +E G P+I + ++ L++ Sbjct: 3 NVFKSQLCLLRQKMSLSQDALAQKLYVSRQSVSKWEHGDAEPDIDKLISLAEILAVDLNF 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + G + I+ ++ KK+ Sbjct: 63 LLSGQQSNEELIIRLQNISKKFKKT 87 >gi|291513608|emb|CBK62818.1| Predicted transcriptional regulator [Alistipes shahii WAL 8301] Length = 223 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K IRK TQ+++A ++A+++ E G S R L E ++ DW+ G Sbjct: 3 ERVKLIRKQLGMTQEQLAQRLGIGKAALSMIETGKAGLSARNRNILVQELNVNPDWLETG 62 Query: 94 EVIDRRYEDV 103 + E Sbjct: 63 KGNMFNAEPD 72 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K IRK GM+Q + + LG+ + LS E G+ + + Q + DW+ Sbjct: 1 MNERVKLIRKQLGMTQEQLAQRLGIGKAALSMIETGKAGLSARNRNILVQELNVNPDWLE 60 Query: 174 FGD 176 G Sbjct: 61 TGK 63 >gi|238063265|ref|ZP_04607974.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] gi|237885076|gb|EEP73904.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] Length = 281 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 9/121 (7%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + P+ + + +G ++ R+A T + A N S ++ +EN S L Sbjct: 1 MAPKTARARR-LGIALRTHREAAGLTLEAAADEINSTRSTLSRYENAQTLISPATVRALL 59 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 Y +S D I + + + + L R ++ + G+ N Sbjct: 60 TLYGVSVDEIAAAVQLAKDARKPG------WWVSYSYLLDRRTIDFIALE--AEATGIAN 111 Query: 141 S 141 Sbjct: 112 F 112 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L++ R+ G++ + STLS YE +T+ R + + +D I Sbjct: 15 LRTHREAAGLTLEAAADEINSTRSTLSRYENAQTLISPATVRALLTLYGVSVDEI 69 >gi|229090748|ref|ZP_04221981.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] gi|228692690|gb|EEL46416.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] Length = 403 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 63 EEDDDEIVELIQK 75 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEIVELIQKMERLIKNK 83 >gi|254510337|ref|ZP_05122404.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534048|gb|EEE37036.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 466 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 29/90 (32%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R TQK+ A +N EN S L L E+ + + Sbjct: 9 GAKLREMRTRLTLTQKDFATKLGISLPYLNQMENNNRPISTTVVLALAQEFGMDVTELST 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + L +R Sbjct: 69 GDSERLVSDMREALADPVFADTMPPLADLR 98 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 28/76 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ +R ++Q +F LG+ L+ E + Q + Sbjct: 6 LYAGAKLREMRTRLTLTQKDFATKLGISLPYLNQMENNNRPISTTVVLALAQEFGMDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSTGDSERLVSDMREA 81 >gi|209517719|ref|ZP_03266556.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209501894|gb|EEA01913.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 291 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 4/84 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW- 89 D+G+ ++ R +Q ++++ A + ++ E+G L L ++ Sbjct: 14 DLGSLLRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDTLLTLAQTLDVPLRER 73 Query: 90 ---IYDGEVIDRRYEDVTNKKRLD 110 + E N + + Sbjct: 74 NALLLAAGYAPIYSEAPWNAQEMH 97 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R +G+SQ++ G+ +S E GR++P + Q L Sbjct: 19 LRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDTLLTLAQTLDVPL 70 >gi|297203859|ref|ZP_06921256.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|197711915|gb|EDY55949.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 201 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 4/131 (3%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + +PE V +++ +R+ + T + A A + ++ E G S+ L L Sbjct: 1 MTSPEAFTELPSVAPQLRALRRRASLTLEAAAGAAGLSPAHLSRLETGQRQPSLPMLLAL 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 Y + + DR + ++ +GM + +P Sbjct: 61 ARIYGTTVSELLGERAADRDAVLRSADMEPTVAGGWTYFQAGAAGRGMQ----ALRVQVP 116 Query: 140 NSTLSNYEQGR 150 + + + + Sbjct: 117 HGSQGDIVRVH 127 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 24/57 (42%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +L+++R+ ++ G+ + LS E G+ P + + ++ + + Sbjct: 16 QLRALRRRASLTLEAAAGAAGLSPAHLSRLETGQRQPSLPMLLALARIYGTTVSELL 72 >gi|20092778|ref|NP_618853.1| helix-turn-helix family protein [Methanosarcina acetivorans C2A] gi|19918074|gb|AAM07333.1| helix-turn-helix family protein [Methanosarcina acetivorans C2A] Length = 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK R ++ TQ+ +A +N E G S+ A L ++ S + I+ Sbjct: 3 NNIKVYRAIHDLTQENLAEKVGVTRQTINAIEKGKYDPSLDLAFKLSRLFKASVEDIFLY 62 Query: 94 EVIDR 98 E ++ Sbjct: 63 ESNEK 67 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K R ++Q + +G+ T++ E+G+ P + A K+ ++ K ++ I+ Sbjct: 1 MKNNIKVYRAIHDLTQENLAEKVGVTRQTINAIEKGKYDPSLDLAFKLSRLFKASVEDIF 60 Query: 174 FGD 176 + Sbjct: 61 LYE 63 >gi|317499138|ref|ZP_07957415.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893551|gb|EFV15756.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 98 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +RK TQ+++A + + ++ EN ++R Y +S D++ E Sbjct: 1 MKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLLRPES 60 Query: 96 IDRRYEDVTNKKRL 109 + +D K + Sbjct: 61 DENGEKDDVLNKEI 74 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-- 175 +K++RK G +Q + L + + +SN E R ++ ++ +D++ Sbjct: 1 MKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLLRPES 60 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 DE + + + +K D K Sbjct: 61 DENGEKDDVLNKEILRLLEKFSTDDKEK 88 >gi|293568750|ref|ZP_06680064.1| transcriptional regulator, putative [Enterococcus faecium E1071] gi|291588467|gb|EFF20301.1| transcriptional regulator, putative [Enterococcus faecium E1071] Length = 270 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RI+ IR+ + ++ S VN +E G+ + ++ + Sbjct: 6 QAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEVGHVTNE 65 Query: 89 WIYDGEVIDRRYEDVTNKK 107 ++ G+ ++ ++ KK Sbjct: 66 YLLYGDQENQYILEMLQKK 84 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D A+G R++ IR++ +S +FGKL+G +P ST++N+E+G +P+ + +I +V Sbjct: 1 MEIDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEVG 60 Query: 166 KKHLDWIYFGDEV 178 +++ +GD+ Sbjct: 61 HVTNEYLLYGDQE 73 >gi|269124939|ref|YP_003298309.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309897|gb|ACY96271.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 188 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I+ R+ + E+A A +S ++ E+G + S+ L + F + Sbjct: 13 QIAASIRRERERAGLSLSELAKRAGIAKSTLSQLESGSGNPSVETLWALAVALGVPFSRL 72 Query: 91 YD 92 D Sbjct: 73 VD 74 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A ++ R+ G+S E K G+ STLS E G P ++ + + Sbjct: 16 ASIRRERERAGLSLSELAKRAGIAKSTLSQLESGSGNPSVETLWALAVALGVPFSRLV 73 >gi|209694526|ref|YP_002262454.1| DNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208008477|emb|CAQ78645.1| DNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 70 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + G ++++IRK +Q ++A+ A+ S V E G + ++ L + E Sbjct: 1 MKYLAANFGKKLREIRKVKGVSQDKLALIADIDRSYVGRIERGEVNITLEKVYKLADALE 60 Query: 85 ISFDWIYD 92 + Sbjct: 61 CDVTELLP 68 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G +L+ IRK KG+SQ + + + S + E+G ++ K+ + + + Sbjct: 8 FGKKLREIRKVKGVSQDKLALIADIDRSYVGRIERGEVNITLEKVYKLADALECDVTELL 67 >gi|253702047|ref|YP_003023236.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251776897|gb|ACT19478.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 199 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/89 (11%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 21 ITPEIRQYWKD--VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + +I+Q ++ +G +++ +R+ T + +A + ++ EN + I L Sbjct: 1 MQEKIKQEIREMKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLK 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKK 107 + ++ + ++ +++ ++ Sbjct: 61 IAKGLKVGIHYFFEEAGDRKKFMLTRGEQ 89 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + +G +++ +R+++ ++ + G+ LS E + P I KI + Sbjct: 6 KQEIREMKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLKIAKGL 65 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 K + + + +E K +G QS S++ N Sbjct: 66 KVGIHYFF--EEAGDRKKFMLTRGEQSPLGSQRRPGKEN 102 >gi|167563856|ref|ZP_02356772.1| DNA-binding protein [Burkholderia oklahomensis EO147] gi|167570993|ref|ZP_02363867.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E S + L N +S ++ Sbjct: 7 IARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLASLF 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + ++ + A Sbjct: 67 EDDRAAQAASPLSRAIEQPVWKDPA 91 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|108756842|ref|YP_628510.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108460722|gb|ABF85907.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 122 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 1/113 (0%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ +G + R TQ ++A + E G S+ L L +E + Sbjct: 3 KKLATTIGAAARVARTRLELTQADVAERIDVATEVYGRLERGGMLPSVHTLLKLCHELHV 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 S D + + P + +R + + + KLLG+ Sbjct: 63 SADELLGLSANAVNGGARPGEPPTSPQERPEVRRLLRTVRPLEPAKV-KLLGL 114 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 19/55 (34%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R ++Q + + + + E+G +P + K+ D + Sbjct: 14 RVARTRLELTQADVAERIDVATEVYGRLERGGMLPSVHTLLKLCHELHVSADELL 68 >gi|163939593|ref|YP_001644477.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861790|gb|ABY42849.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 404 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKTLRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVIDRRYEDVT 104 + + ++ Sbjct: 63 EEDDVEIVEIIQQ 75 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + + I+ + Q K +K D+ Sbjct: 65 DDVEIVEIIQ--QMEQLIKANKCDE 87 >gi|333028514|ref|ZP_08456578.1| putative transcriptional regulatory protein [Streptomyces sp. Tu6071] gi|332748366|gb|EGJ78807.1| putative transcriptional regulatory protein [Streptomyces sp. Tu6071] Length = 212 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 23/69 (33%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ + + ++ R T +A A + E + S+ + + + Sbjct: 22 DLAALTRTLARNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNPSLGTVVKVADAL 81 Query: 84 EISFDWIYD 92 +S + D Sbjct: 82 GVSIPTLLD 90 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R ++G + G+ + EQ RT P + K+ + + Sbjct: 32 RNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNPSLGTVVKVADALGVSIPTLL-- 89 Query: 176 DEVIVPKS 183 D+V P+ Sbjct: 90 DQVPGPRV 97 >gi|333030678|ref|ZP_08458739.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011] gi|332741275|gb|EGJ71757.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011] Length = 153 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 1/89 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY-EISFDWI 90 + R+K I + + E A +S ++ F NG S+ + + + +++ +W+ Sbjct: 3 INDRVKLIMEQEELSSGEFADRTGIQQSTLSHFINGRNKASLDVIMKIHQAFSDVNIEWL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 G+ R + N ++ LK Sbjct: 63 LYGQGSMRTQKTHGNGISVNNNGYQVGLK 91 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 AI R+K I + + +S EF G+ STLS++ GR + KI Q +++ Sbjct: 1 MAINDRVKLIMEQEELSSGEFADRTGIQQSTLSHFINGRNKASLDVIMKIHQAFSDVNIE 60 Query: 171 WIYFG 175 W+ +G Sbjct: 61 WLLYG 65 >gi|323490470|ref|ZP_08095677.1| putative HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323395874|gb|EGA88713.1| putative HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 145 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 17 YTLIITPEIRQ--YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Y ++ P I++ + + R+K++R TQ ++ + + E G S SI Sbjct: 59 YIMLYKPNIQEGRMKQMLKNRVKELRARYGFTQSDLGKQVDVTRQTIAFIEKGEFSPSIT 118 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRYE 101 +L L + + + ++ E ++ + Sbjct: 119 LSLKLAKALQTNVNDLFWLEEDEKHEK 145 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 41/97 (42%), Gaps = 8/97 (8%) Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 S +I + + + R+K +R G +Q + GK + + T++ Sbjct: 56 SIVYIMLYKPNIQEGRMKQ--------MLKNRVKELRARYGFTQSDLGKQVDVTRQTIAF 107 Query: 146 YEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPK 182 E+G P I + K+ + + +++ +++ +E + Sbjct: 108 IEKGEFSPSITLSLKLAKALQTNVNDLFWLEEDEKHE 144 >gi|290962090|ref|YP_003493272.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260651616|emb|CBG74740.1| putative transcriptional regulatory protein [Streptomyces scabiei 87.22] Length = 190 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 24/72 (33%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ + + +K R T +A A + E + SI + + + Sbjct: 2 SDLDLLTQSLARNVKRWRTERGFTLDALASRAGVSRGMLIQIEQARTNPSIGTVVKIGDA 61 Query: 83 YEISFDWIYDGE 94 +S + D E Sbjct: 62 LGVSITTLLDYE 73 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 20/58 (34%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R ++G + G+ L EQ RT P I KI + + Sbjct: 13 RNVKRWRTERGFTLDALASRAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSITTLL 70 >gi|302517812|ref|ZP_07270154.1| transcriptional regulatory protein [Streptomyces sp. SPB78] gi|318061036|ref|ZP_07979757.1| transcriptional regulatory protein [Streptomyces sp. SA3_actG] gi|302426707|gb|EFK98522.1| transcriptional regulatory protein [Streptomyces sp. SPB78] Length = 193 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 23/69 (33%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ + + ++ R T +A A + E + S+ + + + Sbjct: 3 DLAALTRTLARNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNPSLGTVVKVADAL 62 Query: 84 EISFDWIYD 92 +S + D Sbjct: 63 GVSIPTLLD 71 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R ++G + G+ + EQ RT P + K+ + + Sbjct: 13 RNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNPSLGTVVKVADALGVSIPTLL-- 70 Query: 176 DEVIVPKS 183 D+V P+ Sbjct: 71 DQVPGPRV 78 >gi|238821343|ref|YP_002925159.1| hypothetical protein PH10_gp26 [Streptococcus phage PH10] gi|238804925|emb|CAY56519.1| hypothetical protein [Streptococcus phage PH10] Length = 112 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K++R+ + K+MA ++ ++L+E G SI+ + Y+++ W+ Sbjct: 4 RLKELREDLGLSVKDMARDTGVSQNTIHLYERG-GYPSIKQIEMIAKTYDVNPAWLVGWV 62 Query: 95 VIDRRYEDVTNKKRLDPYAIGARL 118 + + +K + + ARL Sbjct: 63 DDEIQPVIQVVEKIIYKESPTARL 86 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-FGD 176 LK +R+D G+S + + G+ +T+ YE+G P IK I + + W+ + D Sbjct: 5 LKELREDLGLSVKDMARDTGVSQNTIHLYERGGY-PSIKQIEMIAKTYDVNPAWLVGWVD 63 Query: 177 EVIVP 181 + I P Sbjct: 64 DEIQP 68 >gi|182437780|ref|YP_001825499.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778414|ref|ZP_08237679.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178466296|dbj|BAG20816.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658747|gb|EGE43593.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 162 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+A + +++A ++ E G+ S + IS + + Sbjct: 8 NLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + G+ N LS E+G P +++ + + + +Y Sbjct: 11 EYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETLY 68 >gi|163869008|ref|YP_001610238.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018685|emb|CAK02243.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 126 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R+ +QK++ + +E G+ + + +IS + + Sbjct: 20 IGKRIRLRREMLKISQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIADILDISI-FFF 78 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++ + + + ++ LKS R+ K Q Sbjct: 79 YADISTKEHVLLPYEEMTSNQEEHTLLKSFRELKPKQQKAI 119 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + T + IG R++ R+ +SQ + G LG+ + YE+G Sbjct: 1 MQTKNPYFPTKNPHSNDILIGKRIRLRREMLKISQKQLGDRLGVTFQQIQKYEKGLNRVG 60 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 ++I + + + ++ D + + S+++ KS Sbjct: 61 AGRLQEIADILDISI-FFFYADISTKEHVLLPYEEMTSNQEEHTLLKS 107 >gi|17549539|ref|NP_522879.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17549570|ref|NP_522910.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431793|emb|CAD18471.1| putative dna-binding transcriptional regulatory transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431824|emb|CAD18502.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 205 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +I+ V +R+K +R+ + T E++ + + + E G + SI + + Sbjct: 14 DIQSVSDAVSSRLKALRREHTLTLDELSRRSGVSKGMLVEIEKGEANPSIAILCKVAAAF 73 Query: 84 EISFDWIY 91 +S I Sbjct: 74 GVSVADIV 81 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ +RLK++R++ ++ E + G+ L E+G P I K+ + I Sbjct: 21 AVSSRLKALRREHTLTLDELSRRSGVSKGMLVEIEKGEANPSIAILCKVAAAFGVSVADI 80 Query: 173 YFGDEVIVPKSI 184 E + I Sbjct: 81 VSVAEASAVRLI 92 >gi|134503|sp|P22753|SINR_BACLI RecName: Full=HTH-type transcriptional regulator sinR gi|551703|gb|AAA22439.1| flaD (sin) homologue; putative [Bacillus licheniformis] Length = 111 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 4/101 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK RK + E+A A +S ++ E + SI++ + ++S + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 Query: 91 YDGEV---IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + + D + + D A G K R+ Sbjct: 62 LNEKDETEYDGQLDSEWENLVRDAMASGVSKKQFREFLDYQ 102 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K RK+KG S E + G+ S LS+ E+ +T P I+ K+ V + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 172 IYFGDEVIV 180 + + Sbjct: 61 LLNEKDETE 69 >gi|84685724|ref|ZP_01013621.1| probable transcriptional regulator [Maritimibacter alkaliphilus HTCC2654] gi|84666390|gb|EAQ12863.1| probable transcriptional regulator [Rhodobacterales bacterium HTCC2654] Length = 201 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG I+ +RK T ++A A + ++ E G + S+R L + ++ + + Sbjct: 22 VGEDIRSLRKTRAMTLAQLAGAAGRSVGWLSQVERGRTTPSVRDLEQLADLLGVNISFFF 81 Query: 92 D 92 Sbjct: 82 R 82 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +G ++S+RK + M+ + G LS E+GRT P ++ ++ + ++ + Sbjct: 20 HHVGEDIRSLRKTRAMTLAQLAGAAGRSVGWLSQVERGRTTPSVRDLEQLADLLGVNISF 79 Query: 172 IY 173 + Sbjct: 80 FF 81 >gi|302557107|ref|ZP_07309449.1| DNA-binding protein [Streptomyces griseoflavus Tu4000] gi|302474725|gb|EFL37818.1| DNA-binding protein [Streptomyces griseoflavus Tu4000] Length = 212 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 V +++ +R+ + T + A A + ++ E G S+ L L Y + Sbjct: 22 PAVAPQLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPTLLSLARTYGTTVSE 81 Query: 90 IYDGEVIDRR 99 + DR Sbjct: 82 LLGESGADRD 91 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ +L+++R+ ++ + G+ + LS E G+ P + + + + + Sbjct: 23 AVAPQLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPTLLSLARTYGTTVSEL 82 Query: 173 YFGDEVIVPKSIKRAKGNQSS 193 G+ ++ RA +S+ Sbjct: 83 L-GESGADRDAVVRAADMEST 102 >gi|289191957|ref|YP_003457898.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] gi|288938407|gb|ADC69162.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] Length = 66 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N TQ+++A + E G S++ A + + + + I+ Sbjct: 3 NKLKIYRAMYNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIFIY 62 Query: 94 EVID 97 E + Sbjct: 63 EKDE 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R ++Q + K LG+ T+ E+G+ P +K A KI + ++ I+ Sbjct: 1 MKNKLKIYRAMYNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60 Query: 174 FGDEV 178 ++ Sbjct: 61 IYEKD 65 >gi|315498461|ref|YP_004087265.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315416473|gb|ADU13114.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 70 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+KD+R TQ ++A N AV E+ S+ A + ++++ + I++ Sbjct: 3 NRLKDLRTEAGLTQADLAARLNVSRQAVIAIESDKHDPSLDLAYRIAAIFDLAVEAIFE 61 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R + G++Q + L + + E + P + A +I + ++ I+ Sbjct: 1 MKNRLKDLRTEAGLTQADLAARLNVSRQAVIAIESDKHDPSLDLAYRIAAIFDLAVEAIF 60 >gi|227431793|ref|ZP_03913820.1| possible transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352476|gb|EEJ42675.1| possible transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 64 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R T K M +G S + +ENG + L + + ++ ++ Sbjct: 2 NRLKELRLERELTLKYMELGTGIKRSTYSDYENGKSEPKLATWEILADYFNVTPQYLVGW 61 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK +R ++ ++ G+ ST S+YE G++ P++ + ++ Sbjct: 1 MNRLKELRLERELTLKYMELGTGIKRSTYSDYENGKSEPKLATWEILADYFNVTPQYLV 59 >gi|196045124|ref|ZP_03112357.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196024126|gb|EDX62800.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 403 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKSLRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 63 EEDDDEMVELIQK 75 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++KS+RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKSLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEMVELIQKMERLIKNK 83 >gi|238798535|ref|ZP_04642013.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia mollaretii ATCC 43969] gi|238717622|gb|EEQ09460.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia mollaretii ATCC 43969] Length = 196 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R A T K++A ES ++ EN + S S+ L + E + + Sbjct: 14 DLGMRLRHARLAQEITLKQLAQKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDL 73 Query: 91 Y 91 Sbjct: 74 M 74 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 30/77 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ R + ++ + + +G S LS E P + ++ + ++ + Sbjct: 17 MRLRHARLAQEITLKQLAQKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLMAE 76 Query: 176 DEVIVPKSIKRAKGNQS 192 V +K A+ ++ Sbjct: 77 SWVADSPVLKPAQRSRK 93 >gi|326326060|ref|YP_004250869.1| putative Lambda repressor-like, DNA-binding fused with Peptidase S24, S26A, S26B and S26C [Vibrio nigripulchritudo] gi|323669111|emb|CBJ93158.1| putative Lambda repressor-like, DNA-binding fused with Peptidase S24, S26A, S26B and S26C [Vibrio nigripulchritudo] Length = 200 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R++++R TQ++M A V +E G + + +SF+++ Sbjct: 6 ELGKRLENLRLGQGLTQEQMGRIAGVTGVTVGKWERGDAVPRDEKLKAVAAHFRVSFEYL 65 Query: 91 YDG 93 G Sbjct: 66 RVG 68 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RL+++R +G++Q + G++ G+ T+ +E+G +P + + + + + Sbjct: 4 MSELGKRLENLRLGQGLTQEQMGRIAGVTGVTVGKWERGDAVPRDEKLKAVAAHFRVSFE 63 Query: 171 WIYFG-DEVIVPKSIKRAKGNQSSKKSKKD 199 ++ G D+ + + ++ S +S +D Sbjct: 64 YLRVGFDQTALLSATQQEVVVIPSYRSGED 93 >gi|322386497|ref|ZP_08060124.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269416|gb|EFX52349.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 75 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 31/66 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ T +K +R++ TQ+E+A + EN + S+ AL + +++ + + Sbjct: 6 NIITNLKSVRESRGMTQQELADHIGMRRETILHLENNRYNPSLEMALKIAQVFDLRVEEL 65 Query: 91 YDGEVI 96 + + Sbjct: 66 FQLKDT 71 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LKS+R+ +GM+Q E +GM T+ + E R P ++ A KI QV ++ ++ Sbjct: 10 NLKSVRESRGMTQQELADHIGMRRETILHLENNRYNPSLEMALKIAQVFDLRVEELF 66 >gi|289770224|ref|ZP_06529602.1| DNA-binding protein [Streptomyces lividans TK24] gi|289700423|gb|EFD67852.1| DNA-binding protein [Streptomyces lividans TK24] Length = 154 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 21 NLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 80 Query: 91 Y 91 Y Sbjct: 81 Y 81 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R++ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 24 EYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 81 >gi|288803985|ref|ZP_06409407.1| DNA-binding protein [Prevotella melaninogenica D18] gi|288333555|gb|EFC72008.1| DNA-binding protein [Prevotella melaninogenica D18] Length = 184 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R+K +R++ + + +EMA + E G S+ L +Y Sbjct: 1 MEEAIKLIGERLKGLRESLDISVEEMAETCGVTDEKYLKMEAGESDLSVSRLYKLSQKYG 60 Query: 85 ISFDWIYDGEVI 96 I+ D + GE Sbjct: 61 IALDALMFGEEP 72 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ +S E + G+ + E G + + K+ Q LD + FG Sbjct: 10 ERLKGLRESLDISVEEMAETCGVTDEKYLKMEAGESDLSVSRLYKLSQKYGIALDALMFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + +G S + K K Sbjct: 70 EEPHMCSYFLTRRGKGMSVERKYAYK 95 >gi|229132613|ref|ZP_04261461.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|228650845|gb|EEL06832.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] Length = 405 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 5 LGEKIKTLRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 92 DGEVIDRRYEDVT 104 + + ++ Sbjct: 64 EEDDVEIVEIIQQ 76 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 7 EKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + + I+ + Q K +K D+ Sbjct: 66 DDVEIVEIIQ--QMEQLIKANKCDE 88 >gi|326441821|ref|ZP_08216555.1| hypothetical protein SclaA2_12194 [Streptomyces clavuligerus ATCC 27064] Length = 417 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 7/103 (6%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRN 81 P + + +G RIK R A Q ++ Q + V+ E G + + Sbjct: 2 PYELEEQEAIGRRIKRRRLALGMPQADLGAAVGQSQGWVSKVEKGRIELDRAALINSIAA 61 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + + D + E+ A + L+ +R+ Sbjct: 62 ALHCHPNDLIDRPYVGTAPENQWQP------AAASILRELRRY 98 Score = 40.3 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDW 171 AIG R+K R GM Q + G +G +S E+GR + I H + Sbjct: 10 AIGRRIKRRRLALGMPQADLGAAVGQSQGWVSKVEKGRIELDRAALINSIAAALHCHPND 69 Query: 172 IY 173 + Sbjct: 70 LI 71 >gi|218507310|ref|ZP_03505188.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 166 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + TS + E + + + + VG +I+ R +N + ++ G V +E+ Sbjct: 18 VRTSRPAQAELSNVARESVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYES 77 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 G S L N +I ++G + +D R+ Sbjct: 78 GKNRVSASMLYELANCLKIPVSRFFEGLPDPETLQGQQFITEIDEKIAYISTAEGRR 134 Score = 41.5 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ R +S + G +G+ + YE G+ ++ K + + G Sbjct: 45 QQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEG 104 >gi|218133873|ref|ZP_03462677.1| hypothetical protein BACPEC_01762 [Bacteroides pectinophilus ATCC 43243] gi|217991248|gb|EEC57254.1| hypothetical protein BACPEC_01762 [Bacteroides pectinophilus ATCC 43243] Length = 219 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ + +G R K R N TQ +A S + +E G + + L L Sbjct: 18 KELRRIIGERAKSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALH 77 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + K+ L A+ ++++ Sbjct: 78 VSVEWL-KGETDSYETDITDKKELLIRDAMTGIIENL 113 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 KS R + ++Q +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 29 KSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVEWL-KGET 87 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 88 DSYETDITDKKE 99 >gi|254390105|ref|ZP_05005326.1| hypothetical protein SSCG_02653 [Streptomyces clavuligerus ATCC 27064] gi|294813466|ref|ZP_06772109.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703813|gb|EDY49625.1| hypothetical protein SSCG_02653 [Streptomyces clavuligerus ATCC 27064] gi|294326065|gb|EFG07708.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 466 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 7/103 (6%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRN 81 P + + +G RIK R A Q ++ Q + V+ E G + + Sbjct: 51 PYELEEQEAIGRRIKRRRLALGMPQADLGAAVGQSQGWVSKVEKGRIELDRAALINSIAA 110 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + + D + E+ A + L+ +R+ Sbjct: 111 ALHCHPNDLIDRPYVGTAPENQWQP------AAASILRELRRY 147 Score = 41.9 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 4/89 (4%) Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 S W D + + AIG R+K R GM Q + G +G +S Sbjct: 35 SVRWRLHSVGQDVTTMP---YELEEQEAIGRRIKRRRLALGMPQADLGAAVGQSQGWVSK 91 Query: 146 YEQGRTIPEIKPARK-IKQVTKKHLDWIY 173 E+GR + I H + + Sbjct: 92 VEKGRIELDRAALINSIAAALHCHPNDLI 120 >gi|146280879|ref|YP_001171032.1| transcriptional regulator [Pseudomonas stutzeri A1501] gi|145569084|gb|ABP78190.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] gi|327479148|gb|AEA82458.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 182 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGVRLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK 49 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDWIYF 174 L++IRK KG+SQ E K G+ NST+S E+ P I +K V L + Sbjct: 7 LQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK---VLSGIPMSLVEFFS 63 Query: 175 GDEVIVPKSIKRAKGNQ 191 D + KG++ Sbjct: 64 PDFDQDSDTQVVYKGSE 80 >gi|73490241|dbj|BAE19798.1| hypothetical protein [Pseudomonas fluorescens] Length = 198 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 18 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 65 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLDWI-Y 173 RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + + + Sbjct: 21 ERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLSGIPMSMVEF 77 Query: 174 FGDEVIVPKSIK 185 F +E++ + Sbjct: 78 FSEEILQENPTQ 89 >gi|317508465|ref|ZP_07966134.1| hypothetical protein HMPREF9336_02506 [Segniliparus rugosus ATCC BAA-974] gi|316253243|gb|EFV12644.1| hypothetical protein HMPREF9336_02506 [Segniliparus rugosus ATCC BAA-974] Length = 177 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R T +E+A +S ++ E G+ + SI AL + + ++D E Sbjct: 5 LRAARHQQRMTLEELAERTGLTKSYLSKVERGLSTPSIAVALKIAGALGVDVARLFDPES 64 Query: 96 IDR 98 D Sbjct: 65 GDE 67 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY---F 174 L++ R + M+ E + G+ S LS E+G + P I A KI + ++ Sbjct: 5 LRAARHQQRMTLEELAERTGLTKSYLSKVERGLSTPSIAVALKIAGALGVDVARLFDPES 64 Query: 175 GDEVI 179 GDE++ Sbjct: 65 GDELV 69 >gi|315649148|ref|ZP_07902239.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275464|gb|EFU38821.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 120 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 28/80 (35%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + RI+ + ++ T+K ++ G + S + + + +S D Sbjct: 1 MQSIYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTTPSTNKLIEIAAFFSVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 W+ G+ + + Sbjct: 61 WLIIGKGSPNTRVRESRGEY 80 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +I R++ + + +GM++ F + LG+ ++++G+T P +I LD Sbjct: 1 MQSIYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTTPSTNKLIEIAAFFSVSLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGN 190 W+ G ++ ++G Sbjct: 61 WLIIGKGS-PNTRVRESRGE 79 >gi|303230548|ref|ZP_07317302.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6] gi|302514789|gb|EFL56777.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6] Length = 149 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 4/94 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD- 92 +K R K+Q E+A +A++ +E G + L YE++ D + + Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALARYYELTLDELVNV 64 Query: 93 ---GEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 V K + LK +K Sbjct: 65 TNEQAERICDISTVVKDKHIKFKGDLYELKESQK 98 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK R G SQIE K +G+ N+ LSNYE G P++ + + + LD Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALARYYELTLDE 60 Query: 172 IY 173 + Sbjct: 61 LV 62 >gi|319762972|ref|YP_004126909.1| hypothetical protein Alide_2286 [Alicycliphilus denitrificans BC] gi|330825052|ref|YP_004388355.1| XRE family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117533|gb|ADV00022.1| Protein of unknown function DUF2083,transcriptional regulator [Alicycliphilus denitrificans BC] gi|329310424|gb|AEB84839.1| transcriptional regulator, XRE family [Alicycliphilus denitrificans K601] Length = 478 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G +K +R+ TQ +A S +N EN ++ L L+ + I Sbjct: 1 MGAHLKTLREQRGLTQAALAQALKVSPSYLNQIENNQRPLTVNVLLRLQAAFGIDL 56 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +GA LK++R+ +G++Q + L + S L+ E + + +++ L Sbjct: 1 MGAHLKTLREQRGLTQAALAQALKVSPSYLNQIENNQRPLTVNVLLRLQAAFGIDLQQF 59 >gi|290959624|ref|YP_003490806.1| chitinase-promoter-binding protein [Streptomyces scabiei 87.22] gi|260649150|emb|CBG72264.1| putative chitinase-promoter-binding protein [Streptomyces scabiei 87.22] Length = 289 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDQ 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RVVDSLM--QMAKDSRQQGWWHAFGD 94 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV-------E 68 Query: 176 DEVIVPKSIKRAKGNQ 191 D+ +V ++ AK ++ Sbjct: 69 DQRVVDSLMQMAKDSR 84 >gi|297193838|ref|ZP_06911236.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|197721253|gb|EDY65161.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] Length = 289 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDH 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHAFGD 94 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 >gi|170023456|ref|YP_001719961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169749990|gb|ACA67508.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] Length = 209 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G RIK R+ + +Q E+A +S + +E S+ A+ L ++ Sbjct: 1 METIGQRIKRFREELSISQAELAQRCGWLSQSRIGNYETDSRKVSVEDAVVLAKALNVNP 60 Query: 88 DWIYDGEVIDRRYED 102 + G + + Sbjct: 61 GELILGTPDNASFTS 75 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 IG R+K R++ +SQ E + G + S + NYE ++ A + + + Sbjct: 1 METIGQRIKRFREELSISQAELAQRCGWLSQSRIGNYETDSRKVSVEDAVVLAKALNVNP 60 Query: 170 DWIYFG 175 + G Sbjct: 61 GELILG 66 >gi|170735407|ref|YP_001774521.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821445|gb|ACA96026.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 81 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 25/65 (38%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G ++ R +Q+ +A+ S + E G + +I + + + IS Sbjct: 13 HLAAIGATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISP 72 Query: 88 DWIYD 92 + Sbjct: 73 SKLLK 77 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIGA +++ R + G+SQ L G+ S + E+G+ I +I + Sbjct: 16 AIGATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISPSKL 75 Query: 173 YF 174 Sbjct: 76 LK 77 >gi|170732473|ref|YP_001764420.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254245889|ref|ZP_04939210.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184] gi|124870665|gb|EAY62381.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184] gi|169815715|gb|ACA90298.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 221 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 33/89 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + R++D+R T +A + S ++L E S + L +S Sbjct: 29 INERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAIVLDKLAAGLGVSL 88 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 ++ G+ D + + + + + A Sbjct: 89 AALFGGDRGDAPAQPLARRAQQAEWRDPA 117 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 34/106 (32%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + + I + I R++ +R +G + G+ S +S E+ Sbjct: 9 LLENKSIMKESSITVADDTGINERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERA 68 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 P K+ L ++ GD P + Q+ + Sbjct: 69 SASPTAIVLDKLAAGLGVSLAALFGGDRGDAPAQPLARRAQQAEWR 114 >gi|313610053|gb|EFR85399.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 89 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK IRK+ +Q+E+AI N + ++ +E G+ + + E S + Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETSVSTLL 61 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K+IRK KG+SQ E L + T+S +EQG ++P+ I +V + + + Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETSVSTL 60 Query: 173 YFGDEVIVPKS 183 G+ V+V K Sbjct: 61 L-GETVMVSKV 70 >gi|284034421|ref|YP_003384352.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813714|gb|ADB35553.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 200 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 1/94 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G ++ R + E+A + + ++ E+G + +I L N + Sbjct: 12 RVLGVNLRARRDEQGISLSELARRSGIAKGTLSQLESGAGNPTIETVFSLSNALGVPVSA 71 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + E V + L+ +R+ Sbjct: 72 LLS-EPPASDLVLVRSADTDVLSGAAVDLRMLRR 104 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L++ R ++G+S E + G+ TLS E G P I+ + + + Sbjct: 17 NLRARRDEQGISLSELARRSGIAKGTLSQLESGAGNPTIETVFSLSNALGVPVSALL 73 >gi|229004528|ref|ZP_04162267.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] gi|228756719|gb|EEM06025.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] Length = 404 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ YL ++ E ++ Sbjct: 4 LGEKIKALRKEKRLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + ++ + Sbjct: 63 EEDNEEVAKLLPKMEQAIKHKKFEE 87 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + + + ++ Sbjct: 6 EKIKALRKEKRLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D V K + + + KK ++ + P Sbjct: 65 DNEEVAKLLPKMEQAIKHKKFEEVYHTLLP 94 >gi|254419132|ref|ZP_05032856.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196185309|gb|EDX80285.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 478 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R+A T + A S ++ E + R + L + I ++ Sbjct: 7 LGAKLRKLREARGWTLEACAERLGLSPSYLSQIETNQRPATARVLIALTRAFHIDAS-LF 65 Query: 92 DGEVI 96 D E Sbjct: 66 DLEGD 70 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +GA+L+ +R+ +G + + LG+ S LS E + + + + Sbjct: 5 LFLGAKLRKLREARGWTLEACAERLGLSPSYLSQIETNQRPATARVLIALTRAFHID 61 >gi|148378625|ref|YP_001253166.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934328|ref|YP_001383012.1| DNA-binding cupin domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153935310|ref|YP_001386559.1| helix-turn-helix domain-containing protein [Clostridium botulinum A str. Hall] gi|168177994|ref|ZP_02612658.1| cupin domain protein [Clostridium botulinum NCTC 2916] gi|226947877|ref|YP_002802968.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] gi|148288109|emb|CAL82177.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152930372|gb|ABS35872.1| DNA-binding/cupin domain protein [Clostridium botulinum A str. ATCC 19397] gi|152931224|gb|ABS36723.1| helix-turn-helix domain protein [Clostridium botulinum A str. Hall] gi|182671201|gb|EDT83175.1| cupin domain protein [Clostridium botulinum NCTC 2916] gi|226840881|gb|ACO83547.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] Length = 183 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N + ++A +N + ++ E G + +I + N ++ + + Sbjct: 7 IAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLL 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + D +N + Sbjct: 67 EQKEYDTCIIKKSNLEPQ 84 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK++R ++ +S + +L + LS E+G T P I KI K + Sbjct: 9 ENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLLEQ 68 Query: 176 DE 177 E Sbjct: 69 KE 70 >gi|158320616|ref|YP_001513123.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140815|gb|ABW19127.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 179 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +I+ +R N TQ E+A + + ++ E + S SI + L Sbjct: 2 DIGEKIRRLRLLNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDLLEALGTDVKKF 61 Query: 91 YDGEVIDRRYEDVTN 105 ++ +V + + Sbjct: 62 FNEDVQSKIIFTKED 76 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R ++Q E + + +S E+ T P I + + + Sbjct: 1 MDIGEKIRRLRLLNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDLLEALGTDVKK 60 Query: 172 IYFGD 176 + D Sbjct: 61 FFNED 65 >gi|90581157|ref|ZP_01236956.1| Hypothetical transcriptional regulator [Vibrio angustum S14] gi|90437678|gb|EAS62870.1| Hypothetical transcriptional regulator [Vibrio angustum S14] Length = 130 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 40/92 (43%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + E N + I +++ R+ KG++Q+ K LG+ T + E G+T P Sbjct: 4 MSEYSVEREINNAMTEIAHIAQKIREAREWKGITQVSMAKQLGVARQTYLDVESGKTEPR 63 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 I I ++T + L W D + I R Sbjct: 64 ILMLMNIAKITGRPLHWFISDDNIPEYGDINR 95 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 30/102 (29%), Gaps = 2/102 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I++ R+ TQ MA E+G I + + W Sbjct: 23 IAQKIREAREWKGITQVSMAKQLGVARQTYLDVESGKTEPRILMLMNIAKITGRPLHWFI 82 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + I + + + L+ ++ ++ I Sbjct: 83 SDDNIPEYGDINRLSVM--YAQVPSPLRQKMIEQNINLISCC 122 >gi|91790200|ref|YP_551152.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91699425|gb|ABE46254.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 197 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 26/70 (37%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + + VG +K +R++ + +++ A +S ++ E + ++ L + Sbjct: 6 SESRSEGPPAVGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAILWRLAS 65 Query: 82 EYEISFDWIY 91 I Sbjct: 66 ALGIDITDFL 75 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G LK++R+ + +S + + G+ S LS E+ P + ++ + Sbjct: 15 AVGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAILWRLASALGIDITDF 74 Query: 173 Y 173 Sbjct: 75 L 75 >gi|89899036|ref|YP_521507.1| anaerobic benzoate catabolism transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343773|gb|ABD67976.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodoferax ferrireducens T118] Length = 324 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 15/163 (9%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E + +G R++ +R T+K +A+ A+ E + E G+ + SI L + Sbjct: 36 GEKNPFLAALGERVRALRARRGMTRKALAMVADVSERHLANLEYGVGNASILVLLQVAGA 95 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP--- 139 + S + + + L A L+ +R G G G+ Sbjct: 96 LQCSLGELIGDVTTSSPEWLMI--RELLEQRDDATLQRVRIAIGEMLGTGGGNAGLSPRI 153 Query: 140 ---------NSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWI 172 STL P ++ +R+I++ + I Sbjct: 154 ALIGLRGAGKSTLGQMLADDLGFPFVELSREIEKFAGCSVSEI 196 Score = 42.2 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G R++++R +GM++ + + L+N E G I ++ + L + Sbjct: 44 ALGERVRALRARRGMTRKALAMVADVSERHLANLEYGVGNASILVLLQVAGALQCSLGEL 103 Query: 173 YFGDEVIVPK 182 P+ Sbjct: 104 IGDVTTSSPE 113 >gi|88860765|ref|ZP_01135402.1| DNA-binding protein [Pseudoalteromonas tunicata D2] gi|88817360|gb|EAR27178.1| DNA-binding protein [Pseudoalteromonas tunicata D2] Length = 63 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + TQ ++A + +N E G S+ A + ++ + I+ Sbjct: 3 NRLKVLRAERDWTQAKLAELLDVSRQTINAIEKGKFDPSLPLAFKAARLFNLTIEDIFQE 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + +LL + T++ E+G+ P + A K ++ ++ I+ Sbjct: 1 MKNRLKVLRAERDWTQAKLAELLDVSRQTINAIEKGKFDPSLPLAFKAARLFNLTIEDIF 60 Query: 174 FGD 176 + Sbjct: 61 QEE 63 >gi|134288001|ref|YP_001110165.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132651|gb|ABO60277.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 79 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 34/67 (50%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++ + G ++ +R+ + +QK++A+ A + ++L E G S ++ + L + Sbjct: 1 MERHNRCFGRVLRRLRRDMHLSQKDLAVHAGVDRTYISLLELGRRSPTLESIVALAAALK 60 Query: 85 ISFDWIY 91 I ++ Sbjct: 61 IPLSRLF 67 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 G L+ +R+D +SQ + G+ + +S E GR P ++ + K L Sbjct: 4 HNRCFGRVLRRLRRDMHLSQKDLAVHAGVDRTYISLLELGRRSPTLESIVALAAALKIPL 63 Query: 170 DWIYFGDEVIVPKSIK 185 ++ EV + + + Sbjct: 64 SRLFAELEVEIARDVD 79 >gi|300855118|ref|YP_003780102.1| hypothetical protein CLJU_c19380 [Clostridium ljungdahlii DSM 13528] gi|300435233|gb|ADK15000.1| conserved protein with HTH domain [Clostridium ljungdahlii DSM 13528] Length = 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R+ M Q E +L+G+ T+ + E GR P +K A I +V ++ ++ ++ Sbjct: 8 VKEYREKMNMKQSELAELIGVRRETIVHLENGRYNPSLKLAMDIAKVFNTSVEELFKFED 67 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K+ R+ N Q E+A + ENG + S++ A+ + + S + ++ E Sbjct: 7 KVKEYREKMNMKQSELAELIGVRRETIVHLENGRYNPSLKLAMDIAKVFNTSVEELFKFE 66 Query: 95 V 95 Sbjct: 67 D 67 >gi|312197902|ref|YP_004017963.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311229238|gb|ADP82093.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 197 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/114 (11%), Positives = 39/114 (34%), Gaps = 13/114 (11%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K V ++ R+ + E+A + + ++ E G + +I + + Sbjct: 1 MSDANKLVARNVRRFREERKLSLGELARRSGLSKQTLSKIEQGTGNPTIDSIEAIADALH 60 Query: 85 ISFDWIY------------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 ++ + G D ++ D + + +D ++++ G Sbjct: 61 LTMRRLVTEWGSPLYVQRAQGAAWDGQH-DDWSVRMMDQVYGSGYVRTLIVRLG 113 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R+++ +S E + G+ TLS EQG P I I + + Sbjct: 10 RNVRRFREERKLSLGELARRSGLSKQTLSKIEQGTGNPTIDSIEAIADALHLTMRRLVT- 68 Query: 176 DEVIVPKSIKRAKG 189 E P ++RA+G Sbjct: 69 -EWGSPLYVQRAQG 81 >gi|229188069|ref|ZP_04315155.1| HTH-type transcriptional regulator ansR [Bacillus cereus BGSC 6E1] gi|228595404|gb|EEK53138.1| HTH-type transcriptional regulator ansR [Bacillus cereus BGSC 6E1] Length = 127 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 31/85 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK+ + ++ A +S +E G S++ + + + S D+I Sbjct: 6 ERLSELRKSKKWSLQDTADQLGIAKSTYAGYETGYRWPSLQSLSKIADLFNTSVDYILGR 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 R + + + + Sbjct: 66 TDDVRSENVIELAEIMKNPDKTISI 90 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK K S + LG+ ST + YE G P ++ KI + +D Sbjct: 1 MRQMLERLSELRKSKKWSLQDTADQLGIAKSTYAGYETGYRWPSLQSLSKIADLFNTSVD 60 Query: 171 WIYFG-DEVIVPKSIKRAKGNQSSKKS 196 +I D+V I+ A+ ++ K+ Sbjct: 61 YILGRTDDVRSENVIELAEIMKNPDKT 87 >gi|254386728|ref|ZP_05002021.1| regulatory protein [Streptomyces sp. Mg1] gi|194345566|gb|EDX26532.1| regulatory protein [Streptomyces sp. Mg1] Length = 197 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 V +++D+R+ T + A A + ++ E G S+ L L Y + Sbjct: 1 MPTVAPQLRDLRRRAGLTLEAAATRARLSPAHLSRLETGRRQPSLPLLLGLARTYGTTVS 60 Query: 89 WIY 91 + Sbjct: 61 ELL 63 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +L+ +R+ G++ + + LS E GR P + + + + + G+ Sbjct: 7 QLRDLRRRAGLTLEAAATRARLSPAHLSRLETGRRQPSLPLLLGLARTYGTTVSELL-GE 65 Query: 177 EVIVPKSIKRAKG 189 V I RA G Sbjct: 66 TPAVADPIVRAGG 78 >gi|196038079|ref|ZP_03105389.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196031349|gb|EDX69946.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 67 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK+ R N TQ+++A ++ E G + S++ A + + D ++ E Sbjct: 6 KIKEYRTKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 95 VI 96 Sbjct: 66 DE 67 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+S+ E+G+ P ++ A I + +D Sbjct: 1 MAFVTKIKEYRTKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60 Query: 172 IYFGDEV 178 ++ ++ Sbjct: 61 VFIFEDE 67 >gi|218779193|ref|YP_002430511.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760577|gb|ACL03043.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K +G RI ++R NN TQ ++A +++ E G+ S++ + S Sbjct: 4 LEKKIGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTLPSVKTLAKVAESLGSSL 63 Query: 88 DWIYD 92 +D Sbjct: 64 KQFFD 68 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ +R + ++Q + + +G+ ++S E+G T+P +K K+ + L + Sbjct: 10 KRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTLPSVKTLAKVAESLGSSLKQFFDF 69 Query: 176 DEV 178 DE Sbjct: 70 DED 72 >gi|153812213|ref|ZP_01964881.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174] gi|149831620|gb|EDM86707.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174] Length = 112 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 30/81 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + ++G RI RKA Q E+ A + ++ E + SI + L + D Sbjct: 9 YTEIGKRIARRRKALGLKQSEVEEKAGLGQKYLSNIERSISIPSIEVIMKLAYVLNTTPD 68 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 G + E + + L Sbjct: 69 EFLIGTLNSNDEEWKKSAELL 89 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 31/73 (42%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + +D IG R+ RK G+ Q E + G+ LSN E+ +IP I+ K+ Sbjct: 1 MEVTMTIDYTEIGKRIARRRKALGLKQSEVEEKAGLGQKYLSNIERSISIPSIEVIMKLA 60 Query: 163 QVTKKHLDWIYFG 175 V D G Sbjct: 61 YVLNTTPDEFLIG 73 >gi|110680995|ref|YP_684002.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109457111|gb|ABG33316.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 229 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 24/67 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ RK + T E++ ++ ENG S S+ L + + + Sbjct: 45 IGREVRGHRKQHGITVAELSALTGISIGMLSKIENGNTSPSLTTLQTLAHALSVPLTSFF 104 Query: 92 DGEVIDR 98 R Sbjct: 105 RRFEESR 111 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 21/149 (14%) Query: 57 LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 SAVN E TS A+ L + ++++ AIG Sbjct: 8 SASAVN-IE----KTSHDMAVKLAQ---------------NPHSIREGEREKVLEVAIGR 47 Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-FG 175 ++ RK G++ E L G+ LS E G T P + + + L + Sbjct: 48 EVRGHRKQHGITVAELSALTGISIGMLSKIENGNTSPSLTTLQTLAHALSVPLTSFFRRF 107 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +E V + +G + ++ + N Sbjct: 108 EESRVAVHTRAGEGVEIDREGTRANHQYN 136 >gi|110678190|ref|YP_681197.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] gi|109454306|gb|ABG30511.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] Length = 192 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R+K IR+ N +Q+++A + +++ E S S+ + + Sbjct: 5 DVGARLKAIRQQNGMSQRQLAEASGVPHGQISMIETNKSSPSVASLRKILGGLSLGMSEF 64 Query: 91 YDGEVIDRRYEDVTNKKRLD 110 ++ +V++ T + D Sbjct: 65 FEPDVVEDDKPFYTPSELRD 84 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +GARLK+IR+ GMSQ + + G+P+ +S E ++ P + RKI Sbjct: 1 MQDFDVGARLKAIRQQNGMSQRQLAEASGVPHGQISMIETNKSSPSVASLRKILGGLSLG 60 Query: 169 LDWIYFGDEVIVPKS 183 + + D V K Sbjct: 61 MSEFFEPDVVEDDKP 75 >gi|13476145|ref|NP_107715.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14026905|dbj|BAB53501.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 227 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 8/96 (8%) Query: 4 NPFLE---TSLKSLQEYTLIITPEIRQYWKD-----VGTRIKDIRKANNKTQKEMAIGAN 55 PFL ++ ++ + + E + KD VG R++ +R + E+A A Sbjct: 8 EPFLTPQGEKEEANEDRRMDMLDEAAEKPKDDADVRVGRRVRALRLERRLSLAELAAKAG 67 Query: 56 QLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 A++ E GM S ++ L +I + Sbjct: 68 VSIGALSQIERGMSSLRVKVIWPLAAALDIEPSALI 103 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 D E K +G R++++R ++ +S E G+ LS E+G + +K Sbjct: 27 DMLDEAAEKPKDDADVRVGRRVRALRLERRLSLAELAAKAGVSIGALSQIERGMSSLRVK 86 Query: 157 PARKIKQVTKKHLDWIYF-GDEVIVPKSIKRAKGNQS 192 + + G++ + RA +S Sbjct: 87 VIWPLAAALDIEPSALIADGNDAVNDLYCVRADKRRS 123 >gi|148548133|ref|YP_001268235.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512191|gb|ABQ79051.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 114 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ R A + TQ ++ AV+ E G S+ L L + Y D + Sbjct: 11 IGRQLAKYRLARHLTQTQVGEHLQISGEAVSRLERGFVELSVSKLLQLADLYGCPADELL 70 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 P+ IG +L R + ++Q + G+ L + +S E+G + ++ + D Sbjct: 8 PHHIGRQLAKYRLARHLTQTQVGEHLQISGEAVSRLERGFVELSVSKLLQLADLYGCPAD 67 Query: 171 WIY 173 + Sbjct: 68 ELL 70 >gi|150018309|ref|YP_001310563.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904774|gb|ABR35607.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 78 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 37/76 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R+ G++Q + G L+G+ +++ E + P I A I Q+ ++ ++ Sbjct: 1 MKNKLKEFREAVGLTQEQLGALVGVSRQAINSIETEKYEPSIWLAYDISQIFHCAIEEVF 60 Query: 174 FGDEVIVPKSIKRAKG 189 ++ + ++G Sbjct: 61 LFEQSERKSRAQLSRG 76 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ R+A TQ+++ A+N E SI A + + + + ++ Sbjct: 3 NKLKEFREAVGLTQEQLGALVGVSRQAINSIETEKYEPSIWLAYDISQIFHCAIEEVFLF 62 Query: 94 EVIDRRYEDV 103 E +R+ Sbjct: 63 EQSERKSRAQ 72 >gi|329941310|ref|ZP_08290589.1| chitinase-promoter-binding protein [Streptomyces griseoaurantiacus M045] gi|329299841|gb|EGG43740.1| chitinase-promoter-binding protein [Streptomyces griseoaurantiacus M045] Length = 289 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDV 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHSFGD 94 Score = 43.8 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 >gi|328885711|emb|CCA58950.1| hypothetical protein SVEN_5664 [Streptomyces venezuelae ATCC 10712] Length = 285 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 19/131 (14%) Query: 43 NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 +QK++ AV+ +E+ L D ++ + Sbjct: 18 KELSQKDVGAAVGVKAPAVSRWEDNQEFPKGEKLPGLAEAVGERLDDLFPNDGP------ 71 Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 A L+ +R D G+S + +++ +SN E GR + + Sbjct: 72 -------------ADLQLLRCDAGLSITQAAEVINASRVPVSNAESGRRRLNDAYVQPLA 118 Query: 163 QVTKKHLDWIY 173 Q + + Sbjct: 119 QAYGVTEEELL 129 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 25/83 (30%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R + + A N V+ E+G + Y L Y ++ + + + Sbjct: 74 LQLLRCDAGLSITQAAEVINASRVPVSNAESGRRRLNDAYVQPLAQAYGVTEEELLAAQD 133 Query: 96 IDRRYEDVTNKKRLDPYAIGARL 118 + T L Sbjct: 134 VSFGLRPDTPAAPRTVGEKINYL 156 Score = 38.4 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 25/52 (48%) Query: 125 KGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 K +SQ + G +G+ +S +E + P+ + + + + LD ++ D Sbjct: 18 KELSQKDVGAAVGVKAPAVSRWEDNQEFPKGEKLPGLAEAVGERLDDLFPND 69 >gi|317492341|ref|ZP_07950770.1| hypothetical protein HMPREF0864_01534 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919680|gb|EFV41010.1| hypothetical protein HMPREF0864_01534 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 186 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 27/69 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++D+R+ + + A ++ + E G S ++ + + + SF Sbjct: 8 IGQTLRDLRQQRGWSLDKTAQATGVSKAMLGQIERGESSPTVVTLWRISSGLQASFSEFL 67 Query: 92 DGEVIDRRY 100 ++ D Sbjct: 68 PKQLTDAEP 76 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG L+ +R+ +G S + + G+ + L E+G + P + +I + Sbjct: 6 LHIGQTLRDLRQQRGWSLDKTAQATGVSKAMLGQIERGESSPTVVTLWRISSGLQASFSE 65 Query: 172 IY 173 Sbjct: 66 FL 67 >gi|295108178|emb|CBL22131.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +IK+ R+ Q E+A + ENG + S++ A+ + + ++ + +++ Sbjct: 6 KIKEYREQAGYKQSELAELVGARRETIVHLENGRYNPSLKLAMDIAKVFHVTVEELFE 63 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ ++K R+ G Q E +L+G T+ + E GR P +K A I +V ++ Sbjct: 1 MALVTKIKEYREQAGYKQSELAELVGARRETIVHLENGRYNPSLKLAMDIAKVFHVTVEE 60 Query: 172 IYFGDEV 178 ++ E Sbjct: 61 LFEFVED 67 >gi|229825709|ref|ZP_04451778.1| hypothetical protein GCWU000182_01072 [Abiotrophia defectiva ATCC 49176] gi|229790272|gb|EEP26386.1| hypothetical protein GCWU000182_01072 [Abiotrophia defectiva ATCC 49176] Length = 66 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 29/58 (50%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+K+ R+ N Q E+A + ENG + S++ A+ + + ++ + +++ Sbjct: 6 RLKEYREKANYKQAELAELVGARRETIVHLENGKYNPSLKLAMDIAKVFGVTVEELFE 63 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ RLK R+ Q E +L+G T+ + E G+ P +K A I +V ++ Sbjct: 1 MALITRLKEYREKANYKQAELAELVGARRETIVHLENGKYNPSLKLAMDIAKVFGVTVEE 60 Query: 172 IY 173 ++ Sbjct: 61 LF 62 >gi|224543260|ref|ZP_03683799.1| hypothetical protein CATMIT_02460 [Catenibacterium mitsuokai DSM 15897] gi|224523793|gb|EEF92898.1| hypothetical protein CATMIT_02460 [Catenibacterium mitsuokai DSM 15897] Length = 108 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 D+ R+K R N TQKE+A N SA++ ENG ++ L Y S Sbjct: 3 LDMDLAKRLKTYRTFKNLTQKEVAAHLNVPHSAISDIENGKRDVTVGELKVLSRLYGRSV 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + I G+ D Y ++ N RL LK + + + Sbjct: 63 EEIMSGKKYD--YYNIANIARLLSELPDEDLKEVMFIIEYKRKRLEEK 108 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK+ R K ++Q E L +P+S +S+ E G+ + + + ++ + ++ Sbjct: 5 MDLAKRLKTYRTFKNLTQKEVAAHLNVPHSAISDIENGKRDVTVGELKVLSRLYGRSVEE 64 Query: 172 IYFGDE 177 I G + Sbjct: 65 IMSGKK 70 >gi|218134838|ref|ZP_03463642.1| hypothetical protein BACPEC_02741 [Bacteroides pectinophilus ATCC 43243] gi|217990223|gb|EEC56234.1| hypothetical protein BACPEC_02741 [Bacteroides pectinophilus ATCC 43243] Length = 219 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 2/97 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ + +G R K R N TQ +A S + +E G + + L L Sbjct: 18 KELRRIIGERAKSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALH 77 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +S +W+ GE + K+ L A+ ++++ Sbjct: 78 VSVEWL-KGETDSYETDITDKKELLIRDAMTGIIENL 113 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGDE 177 KS R + ++Q +G+ ST+ YE G K + + + ++W+ G+ Sbjct: 29 KSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVEWL-KGET 87 Query: 178 VIVPKSIKRAKG 189 I K Sbjct: 88 DSYETDITDKKE 99 >gi|182701701|ref|ZP_02614397.2| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182669321|gb|EDT81297.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 81 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 35/77 (45%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 +++ + + + T+I ++RK +N Q+E+A + EN + S++ Sbjct: 2 DFSFFMRKSVTNNMPQLKTKIHELRKEHNMKQEELAKLVGVRRETIGHLENEKYNPSLKL 61 Query: 76 ALYLRNEYEISFDWIYD 92 A+ + + S + ++ Sbjct: 62 AMDIAKVFGKSVEEVFQ 78 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + + + ++ +RK+ M Q E KL+G+ T+ + E + P +K A I Sbjct: 7 MRKSVTNNMPQLKTKIHELRKEHNMKQEELAKLVGVRRETIGHLENEKYNPSLKLAMDIA 66 Query: 163 QVTKKHLDWIY 173 +V K ++ ++ Sbjct: 67 KVFGKSVEEVF 77 >gi|167756112|ref|ZP_02428239.1| hypothetical protein CLORAM_01632 [Clostridium ramosum DSM 1402] gi|237734097|ref|ZP_04564578.1| predicted protein [Mollicutes bacterium D7] gi|167704104|gb|EDS18683.1| hypothetical protein CLORAM_01632 [Clostridium ramosum DSM 1402] gi|229382923|gb|EEO33014.1| predicted protein [Coprobacillus sp. D7] Length = 73 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R TQ+++A + + + +E G + L Y+ S D++ + Sbjct: 5 KRLKELRTKYGYTQEKVAKYLHVDQKTYSRYELGQHEMTPDTLGKLATLYDTSVDYLIER 64 Query: 94 EVIDRRYED 102 + + Sbjct: 65 TDNIKSFTK 73 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK +R G +Q + K L + T S YE G+ K+ + +D+ Sbjct: 1 MMQYKRLKELRTKYGYTQEKVAKYLHVDQKTYSRYELGQHEMTPDTLGKLATLYDTSVDY 60 Query: 172 IYFGDEVIV 180 + + I Sbjct: 61 LIERTDNIK 69 >gi|147918990|ref|YP_687283.1| transcription regulator [uncultured methanogenic archaeon RC-I] gi|110622679|emb|CAJ37957.1| predicted transcription regulator [uncultured methanogenic archaeon RC-I] Length = 184 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ K+V RIK++R+ + +Q+ MA + +ENG + + Sbjct: 1 MQERIKEVAARIKELREILDISQESMASDLRISQDTYRRYENGEEDIPASILYEISRKLG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + + GE Y VT K + + K Sbjct: 61 VEMSILLTGEAPRMHYFTVTRKGQGVSVERRKQYK 95 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 32/89 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR+K +R+ +SQ L + T YE G +I + + + G Sbjct: 10 ARIKELREILDISQESMASDLRISQDTYRRYENGEEDIPASILYEISRKLGVEMSILLTG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + KG S + +K K N Sbjct: 70 EAPRMHYFTVTRKGQGVSVERRKQYKYQN 98 >gi|83956173|ref|ZP_00964626.1| subunit S of type I restriction-modification system [Sulfitobacter sp. NAS-14.1] gi|83839559|gb|EAP78739.1| subunit S of type I restriction-modification system [Sulfitobacter sp. NAS-14.1] Length = 164 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 7/111 (6%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + VG I+ +R+ +Q+++A+ A + EN S S+ + + Sbjct: 2 KLRHQVGLNIQKLRRERGISQEDLALMAKVNRGYMGKLENAKNSASLDMVERIATALNVV 61 Query: 87 FDWIYDGEVI-------DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 W+ G+ D+ + D + + K+ R + Q Sbjct: 62 PSWLLVGDEPFQFVQRFDKEKGVFRPMEIADENSKPSPKKTKRLKANIVQE 112 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 13/95 (13%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ +R+++G+SQ + + + + E + + +I W+ GD Sbjct: 10 NIQKLRRERGISQEDLALMAKVNRGYMGKLENAKNSASLDMVERIATALNVVPSWLLVGD 69 Query: 177 E-------------VIVPKSIKRAKGNQSSKKSKK 198 E V P I S KK+K+ Sbjct: 70 EPFQFVQRFDKEKGVFRPMEIADENSKPSPKKTKR 104 >gi|327394419|dbj|BAK11841.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355] Length = 153 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ IR+A +Q+ +A A SA++ E S ++ L Y +S + Sbjct: 9 GRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A G RL IR+ G+SQ +L G+ +S +S EQ + P + +K+ +V L Sbjct: 5 NQAPGRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLS 64 Query: 171 WIY 173 + Sbjct: 65 EFF 67 >gi|330814715|ref|YP_004362890.1| hypothetical protein bgla_4p3070 [Burkholderia gladioli BSR3] gi|327374707|gb|AEA66058.1| hypothetical protein bgla_4p3070 [Burkholderia gladioli BSR3] Length = 111 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + VG R+K++R K+Q+++A A A++ E+G +T++ L Sbjct: 15 ERNPITQAVGRRLKEVRLQAGKSQEDLAHEAAVSRVAISAVESGAANTTVLTLAALCRPL 74 Query: 84 EISFDWIY 91 IS ++ Sbjct: 75 GISLSELF 82 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + + T ++ A+G RLK +R G SQ + + +S E G + Sbjct: 6 NASAKTPTFERNPITQAVGRRLKEVRLQAGKSQEDLAHEAAVSRVAISAVESGAANTTVL 65 Query: 157 PARKIKQVTKKHLDWIY 173 + + L ++ Sbjct: 66 TLAALCRPLGISLSELF 82 >gi|326795756|ref|YP_004313576.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1] gi|326546520|gb|ADZ91740.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1] Length = 203 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G R+K+IR T +E++ S ++ EN S S L + + Sbjct: 23 ELGKRVKEIRLTKGWTLEEVSQRTGIARSTLSKIENDQVSPSFTIVQKLIKGLGMDLPQL 82 Query: 91 Y 91 + Sbjct: 83 F 83 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 K ++P +G R+K IR KG + E + G+ STLS E + P +K+ + Sbjct: 14 EPDKFVEPLELGKRVKEIRLTKGWTLEEVSQRTGIARSTLSKIENDQVSPSFTIVQKLIK 73 Query: 164 VTKKHLDWIY 173 L ++ Sbjct: 74 GLGMDLPQLF 83 >gi|300819725|ref|ZP_07099914.1| transcriptional repressor DicA [Escherichia coli MS 107-1] gi|300527676|gb|EFK48738.1| transcriptional repressor DicA [Escherichia coli MS 107-1] Length = 135 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 35/80 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK+ +Q K L + + ++S +E+ + P K + +V + WI FG Sbjct: 10 ERIRYRRKNLKHTQRSLAKALKISHVSVSQWERDDSEPTGKNLFALSKVLQCSPTWILFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 DE P S K+ Sbjct: 70 DEDKQPTPPVEKPVALSPKE 89 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK TQ+ +A +V+ +E + + L + S WI Sbjct: 8 IGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERDDSEPTGKNLFALSKVLQCSPTWIL 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 G+ + V L Sbjct: 68 FGDEDKQPTPPVEKPVAL 85 >gi|300854388|ref|YP_003779372.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434503|gb|ADK14270.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 181 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 35/80 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +++ +R++K +S + ++ + +S E+ T P + KI + +++ Sbjct: 1 MKFGFKIRKLRQEKSISIEQLAEMAKLSTGLISQVERNITGPSVTTLWKIAKALNVSMNY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + DE ++ R + Sbjct: 61 FFDEDEYEEKDNVVRKDKRK 80 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +I+ +R+ + + +++A A ++ E + S+ + +S ++ Sbjct: 2 KFGFKIRKLRQEKSISIEQLAEMAKLSTGLISQVERNITGPSVTTLWKIAKALNVSMNYF 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 +D + + + V KR Sbjct: 62 FDEDEYEEKDNVVRKDKR 79 >gi|291618017|ref|YP_003520759.1| PuuR [Pantoea ananatis LMG 20103] gi|291153047|gb|ADD77631.1| PuuR [Pantoea ananatis LMG 20103] Length = 185 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ IR+A +Q+ +A A SA++ E S ++ L Y +S + Sbjct: 9 GRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A G RL IR+ G+SQ +L G+ +S +S EQ + P + +K+ +V L Sbjct: 5 NQAPGRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLS 64 Query: 171 WIY 173 + Sbjct: 65 EFF 67 >gi|262200800|ref|YP_003272008.1| transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084147|gb|ACY20115.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 192 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 25/82 (30%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ V RI+ +R A T +A S ++ E G ++ + + Sbjct: 2 AQELDVVVRQRIRGLRIAKGWTLDALAARCFLSPSTLSRIETGHRRVALDQLVPIAQALG 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNK 106 + D + + Sbjct: 62 TTLDQLVEPADDGDVVIRPEPH 83 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 4/75 (5%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R++ +R KG + + STLS E G + I Q LD + Sbjct: 8 VVRQRIRGLRIAKGWTLDALAARCFLSPSTLSRIETGHRRVALDQLVPIAQALGTTLDQL 67 Query: 173 YF----GDEVIVPKS 183 GD VI P+ Sbjct: 68 VEPADDGDVVIRPEP 82 >gi|226328630|ref|ZP_03804148.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198] gi|225203363|gb|EEG85717.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198] Length = 97 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 31/80 (38%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ K VG +I+ +R+ T E+ + + +ENG + L +++ Sbjct: 8 KKISKLVGKKIRSLREMYCMTGDELGALLGISQQHQSRYENGETNIHAETLYCLSYFFDV 67 Query: 86 SFDWIYDGEVIDRRYEDVTN 105 ++ +I+ + Sbjct: 68 EPEYFLSDLLIEDNKLEKDK 87 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++S+R+ M+ E G LLG+ S YE G T + + ++ Sbjct: 16 KKIRSLREMYCMTGDELGALLGISQQHQSRYENGETNIHAETLYCLSYFFDVEPEYFL-- 73 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 I+ K + SKK+ Sbjct: 74 ----SDLLIEDNKLEKDKIDSKKE 93 >gi|167761093|ref|ZP_02433220.1| hypothetical protein CLOSCI_03491 [Clostridium scindens ATCC 35704] gi|167661327|gb|EDS05457.1| hypothetical protein CLOSCI_03491 [Clostridium scindens ATCC 35704] Length = 374 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ + +R+ TQ+E+A +++V+ +E I + + Y ++ D + Sbjct: 5 NLAENLIRLRREKEVTQEEVANFIGVTKASVSKWETKQSLPDILLLPVIASYYGVTVDEL 64 Query: 91 YDGEVI 96 + Sbjct: 65 LGYKPQ 70 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 37/78 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D + L +R++K ++Q E +G+ +++S +E +++P+I I Sbjct: 1 MDTLNLAENLIRLRREKEVTQEEVANFIGVTKASVSKWETKQSLPDILLLPVIASYYGVT 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 +D + + + I++ Sbjct: 61 VDELLGYKPQLGKEQIQK 78 >gi|322383792|ref|ZP_08057543.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152004|gb|EFX44947.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 137 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 30/75 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +Y + TR++++R N +Q+E A + + +E+G + + + + Sbjct: 16 EMKYKEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFN 75 Query: 85 ISFDWIYDGEVIDRR 99 S D++ Sbjct: 76 TSTDYLLGKTDNPES 90 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 + + RL+ +R G SQ EF K +G+ + ++NYE GR P + KI + Sbjct: 13 CSMEMKYKEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAE 72 Query: 164 VTKKHLDWIYFGDEVIVPKSIKR 186 D++ + ++ Sbjct: 73 GFNTSTDYLLGKTDNPESLKVRD 95 >gi|256544850|ref|ZP_05472222.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC 51170] gi|256399739|gb|EEU13344.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC 51170] Length = 78 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ RK +Q + +++N E G S++ A + N ++ I+D Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALDVCIYQIFDL 62 Query: 94 EVIDRRYEDVTN 105 + +N Sbjct: 63 DGTGHYKCLDSN 74 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ RK G+SQ GK +G+ ++++ E G+TIP +K A I + I+ Sbjct: 1 MNNRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALDVCIYQIF 60 Query: 174 FGD 176 D Sbjct: 61 DLD 63 >gi|255528351|ref|ZP_05395157.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185570|ref|ZP_06853979.1| tetratricopeptide repeat protein [Clostridium carboxidivorans P7] gi|255507961|gb|EET84395.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049698|gb|EFG89123.1| tetratricopeptide repeat protein [Clostridium carboxidivorans P7] Length = 434 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A G ++L E+G + S+ YL N S +++ Sbjct: 6 LGEKIKRRRKDLNMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLANALNTSIEYLM 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E + + Y I L Sbjct: 65 ESEETQAEKICTYFENIAESYIINEDL 91 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K RKD M+ + + +S E G++ P + + Sbjct: 1 MEILSLGEKIKRRRKDLNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANALNTS 59 Query: 169 LDWIYFGDEVIVPK 182 ++++ +E K Sbjct: 60 IEYLMESEETQAEK 73 >gi|218902898|ref|YP_002450732.1| DNA-binding protein [Bacillus cereus AH820] gi|228914360|ref|ZP_04077975.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|218536358|gb|ACK88756.1| DNA-binding protein [Bacillus cereus AH820] gi|228845354|gb|EEM90390.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 403 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVIDRRYEDVT 104 + + + Sbjct: 63 EEDDDEIVELIQK 75 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEIVELIQKMERLIKNK 83 >gi|160893603|ref|ZP_02074387.1| hypothetical protein CLOL250_01157 [Clostridium sp. L2-50] gi|156864588|gb|EDO58019.1| hypothetical protein CLOL250_01157 [Clostridium sp. L2-50] Length = 145 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 1/109 (0%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K G ++K+ R +QK++A A + +E G L E+S + Sbjct: 1 MKSFGAKVKEQRGNLGLSQKQLAEKAGMGIRTITSYELGERKPYQAQLYKLAKALEVSTE 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 ++ + I+ + + ++ + + + M G Sbjct: 61 YL-QNDNIEDPSYGLDRMEYVEDMRKNSGTREALDLQKMLAENTALFAG 108 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 39/86 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + GA++K R + G+SQ + + GM T+++YE G P K+ + + + Sbjct: 1 MKSFGAKVKEQRGNLGLSQKQLAEKAGMGIRTITSYELGERKPYQAQLYKLAKALEVSTE 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKS 196 ++ + + R + + +K+ Sbjct: 61 YLQNDNIEDPSYGLDRMEYVEDMRKN 86 >gi|113460765|ref|YP_718832.1| transcriptional regulator [Haemophilus somnus 129PT] gi|112822808|gb|ABI24897.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 128 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 36/107 (33%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +I+ +R+ N +Q++MA + + E+G + +I + + I + Sbjct: 8 EIHDKIRVMREINQWSQEDMAEKLDMSPTGYAKIEHGKTNLTIEKLKQIAQIFNIDVVEL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 + + N + L + + +G Sbjct: 68 IASQDKSFFFSIGDNTNNHNYIVPNQALAMENEKLRLLLEAKENEIG 114 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +++ +R+ SQ + + L M + + E G+T I+ ++I Q+ + Sbjct: 7 MEIHDKIRVMREINQWSQEDMAEKLDMSPTGYAKIEHGKTNLTIEKLKQIAQIFNIDVVE 66 Query: 172 IY 173 + Sbjct: 67 LI 68 >gi|120401822|ref|YP_951651.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954640|gb|ABM11645.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 176 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+G+ I+ R+A + +++A A ++ E G+ S + +S + Sbjct: 16 QDIGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEV 75 Query: 90 IY 91 +Y Sbjct: 76 LY 77 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 30/73 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + +++ R+ +S + + G+ N LS E+G P +I + + + +Y Sbjct: 20 SFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVLYVR 79 Query: 176 DEVIVPKSIKRAK 188 ++ P + Sbjct: 80 AGILEPSETNEVR 92 >gi|71903453|ref|YP_280256.1| phage associated transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|94988560|ref|YP_596661.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94992382|ref|YP_600481.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|94994358|ref|YP_602456.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|71802548|gb|AAX71901.1| phage associated transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|94542068|gb|ABF32117.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS9429] gi|94545890|gb|ABF35937.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS2096] gi|94547866|gb|ABF37912.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10750] Length = 72 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI+++R+ N+ TQK +A + + E G + + Y +S D++ Sbjct: 4 RIRNLREDNDFTQKFVANLLSFSHANYAKIERGEVALMADVLVQFSKLYNVSIDYLLGQT 63 Query: 95 VIDRRY 100 R+ Sbjct: 64 DYPYRF 69 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++++R+D +Q LL ++ + E+G + ++ +D++ Sbjct: 1 MYPRIRNLREDNDFTQKFVANLLSFSHANYAKIERGEVALMADVLVQFSKLYNVSIDYLL 60 >gi|21221318|ref|NP_627097.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|7635975|emb|CAB88810.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 281 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 + I+Q + +G R+++IRK T +E+A A ES + ENG S Sbjct: 4 SSSIQQARETLGKRLREIRKDAGLTARELASRAGWHESKCSRIENGRTPPSDDDL 58 Score = 40.3 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 20/44 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 RL+ IRKD G++ E G S S E GRT P R Sbjct: 16 KRLREIRKDAGLTARELASRAGWHESKCSRIENGRTPPSDDDLR 59 >gi|147673117|ref|YP_001218249.1| hypothetical protein VC0395_A2349 [Vibrio cholerae O395] gi|262166988|ref|ZP_06034706.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27] gi|146315000|gb|ABQ19539.1| conserved domain protein [Vibrio cholerae O395] gi|227011827|gb|ACP08037.1| hypothetical protein VC395_0008 [Vibrio cholerae O395] gi|262024572|gb|EEY43255.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27] Length = 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI +RK+ TQ ++A+ A S V E G + ++ + + + Sbjct: 9 VGKRIAKMRKSKGLTQDKLALLAEIDRSYVGRIERGEVNITVEKLYQIADTLGCDVKELL 68 Query: 92 D 92 Sbjct: 69 P 69 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+ +RK KG++Q + L + S + E+G ++ +I + + Sbjct: 11 KRIAKMRKSKGLTQDKLALLAEIDRSYVGRIERGEVNITVEKLYQIADTLGCDVKELL 68 >gi|254180890|ref|ZP_04887488.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|184211429|gb|EDU08472.1| DNA-binding protein [Burkholderia pseudomallei 1655] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 31/90 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + R++ +R + +A + S ++L E + + L N +S Sbjct: 2 DINQRIARRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 +++ + R ++ + A Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPA 91 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|301061349|ref|ZP_07202130.1| cupin domain protein [delta proteobacterium NaphS2] gi|300444544|gb|EFK08528.1| cupin domain protein [delta proteobacterium NaphS2] Length = 234 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 32/85 (37%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + +VG R+K +RK + T ++++ + + + ENG + + + L Sbjct: 42 SSPKEDIQVNVGERVKRVRKDRDLTLQDISRRTDLDVAFLEQIENGSVAPPLGTVIKLAK 101 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNK 106 ++ + G+ N Sbjct: 102 ALDLKMGYFISGDEDRPYTIVRKND 126 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E ++ K +G R+K +RKD+ ++ + + + + L E G P Sbjct: 32 EQDFYDSISPSSPKEDIQVNVGERVKRVRKDRDLTLQDISRRTDLDVAFLEQIENGSVAP 91 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSK 194 + K+ + + + GDE +++ G S+ Sbjct: 92 PLGTVIKLAKALDLKMGYFISGDEDRPYTIVRKNDGKVVSR 132 >gi|299537075|ref|ZP_07050378.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298727316|gb|EFI67888.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 183 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 34/89 (38%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E VG +++IRK+ + +E+A +N + + E G + ++ + Sbjct: 1 MQEENIDLSGQVGGNLREIRKSKRMSLEELAKVSNVSKLTLGKIERGETNPTVNILWKIC 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 I + E + ++ + + Sbjct: 61 RGLNIPLVALLSFEENIEVHRFGSDYQFV 89 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+ IRK K MS E K+ + TL E+G T P + KI + L + + Sbjct: 15 NLREIRKSKRMSLEELAKVSNVSKLTLGKIERGETNPTVNILWKICRGLNIPLVALLSFE 74 Query: 177 EVIV 180 E I Sbjct: 75 ENIE 78 >gi|293393047|ref|ZP_06637364.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291424581|gb|EFE97793.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 135 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + G R+K++ KTQKE+A S N +E GM + + L + Sbjct: 10 QTEEQRRAFGQRLKELHNQQRKTQKEVAALIGLQLSQYNKYEAGMHIPAADKLIQLAELF 69 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKR 108 + D++ G ++ T Sbjct: 70 TTTIDYLLLGSSNEQAPISNTRLMN 94 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G RLK + + +Q E L+G+ S + YE G IP ++ ++ +D++ Sbjct: 17 AFGQRLKELHNQQRKTQKEVAALIGLQLSQYNKYEAGMHIPAADKLIQLAELFTTTIDYL 76 Query: 173 YFG 175 G Sbjct: 77 LLG 79 >gi|237717599|ref|ZP_04548080.1| helix-turn-helix domain-containing protein [Bacteroides sp. 2_2_4] gi|229453103|gb|EEO58894.1| helix-turn-helix domain-containing protein [Bacteroides sp. 2_2_4] Length = 358 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 3/123 (2%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGAN--QLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + R+K R + + + +V+ +ENG + + N Sbjct: 2 KIEEIFAKRLKSARIMAGWSMDMLCEKIGNLISKQSVSKYENGKMMPDSSVLIAIANALN 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAI-GARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 + D+ + + + +V+ +K+ +K +DK +E +LG+ N Sbjct: 62 LDPDYFFRPFLFELDEFEVSFRKKNKVKVYETNAIKEKIRDKVERYLEIENILGLENKFE 121 Query: 144 SNY 146 S Sbjct: 122 STI 124 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 10/97 (10%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLKS R G S + +G + ++S YE G+ +P+ I D+ Sbjct: 7 FAKRLKSARIMAGWSMDMLCEKIGNLISKQSVSKYENGKMMPDSSVLIAIANALNLDPDY 66 Query: 172 IYF--------GDEVIVPKSIKRAKGNQSSKKSKKDK 200 + + K+ + + K+ +DK Sbjct: 67 FFRPFLFELDEFEVSFRKKNKVKVYETNAIKEKIRDK 103 >gi|171778687|ref|ZP_02919783.1| hypothetical protein STRINF_00635 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282644|gb|EDT48068.1| hypothetical protein STRINF_00635 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 65 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ R +Q +A VNL EN + S+ + L + ++ Sbjct: 2 NRVKEFRTNLGISQLTLAKQIGIARQTVNLIENNKYNPSLDLCIKLAEALGTDLNTLF 59 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R + G+SQ+ K +G+ T++ E + P + K+ + L+ +++ Sbjct: 1 MNRVKEFRTNLGISQLTLAKQIGIARQTVNLIENNKYNPSLDLCIKLAEALGTDLNTLFW 60 Query: 175 G 175 Sbjct: 61 E 61 >gi|196033371|ref|ZP_03100783.1| DNA-binding protein [Bacillus cereus W] gi|195993805|gb|EDX57761.1| DNA-binding protein [Bacillus cereus W] Length = 403 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVID 97 + + + Sbjct: 63 EEDDDE 68 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEIVELIQKMERLIKNK 83 >gi|158423451|ref|YP_001524743.1| hypothetical protein AZC_1827 [Azorhizobium caulinodans ORS 571] gi|158330340|dbj|BAF87825.1| hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 231 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G I+ +RKA N + ++A + +S ++ E + ++ L +++ + Sbjct: 48 QLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDVTVE 105 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 1/98 (1%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E R + +G ++ +RK +S + + G+ S +S E+ T Sbjct: 27 QREKPPERGSGLEPGAHAITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNET 86 Query: 152 IPEIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAK 188 P + ++ Q ++ + DE + + RA Sbjct: 87 NPTLATVWRLSQALDVTVERVLASSDEAPFVEKLTRAD 124 >gi|2231995|gb|AAC45921.1| aldehyde dehydrogenase [Azotobacter vinelandii] Length = 185 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 5 DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK 52 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDWIYF 174 L+SIRK KG+SQ E K G+ NST+S E+ P I +K V L + Sbjct: 10 LQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK---VLGGIPMSLMEFFS 66 Query: 175 GD---EVIVPKSIKRAKGNQSSK 194 D E P + A+ + S+ Sbjct: 67 LDLEAEASAPVVYRAAEQAELSR 89 >gi|83942889|ref|ZP_00955349.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83954060|ref|ZP_00962780.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841097|gb|EAP80267.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83845897|gb|EAP83774.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 132 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 37/104 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R+ + TQ +A +S + +E+ + L +S W+ Sbjct: 15 FGDRVAAARENADMTQAALAKRLGIKQSTLRGWEDDLSEPRANRLSTLAGVLGVSMMWLI 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 +GE D T + L+ +R D + G+L Sbjct: 75 NGEGEGIDAPDDTAATDANIKEALIELRDMRADLLKRAEQMGRL 118 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G R+ + R++ M+Q K LG+ STL +E + P + V + Sbjct: 11 DVATFGDRVAAARENADMTQAALAKRLGIKQSTLRGWEDDLSEPRANRLSTLAGVLGVSM 70 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKS 196 W+ G+ + A + + K++ Sbjct: 71 MWLINGEGEGIDAPDDTAATDANIKEA 97 >gi|312865005|ref|ZP_07725233.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311099116|gb|EFQ57332.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ R+ +Q +A +NL ENG + S+ + L + + ++ Sbjct: 2 NRVKEFRQLKKLSQLALAREIGVARQTINLIENGKYNPSLELCIKLAKSLDTDLNSLF 59 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 33/69 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R+ K +SQ+ + +G+ T++ E G+ P ++ K+ + L+ +++ Sbjct: 1 MNRVKEFRQLKKLSQLALAREIGVARQTINLIENGKYNPSLELCIKLAKSLDTDLNSLFW 60 Query: 175 GDEVIVPKS 183 P+ Sbjct: 61 EVSDRSPRD 69 >gi|300119011|ref|ZP_07056722.1| transcriptional regulator, PBSX family protein [Bacillus cereus SJ1] gi|298723627|gb|EFI64358.1| transcriptional regulator, PBSX family protein [Bacillus cereus SJ1] Length = 83 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 Q YT + P ++ V +I ++R NN +Q +A +N EN S+ Sbjct: 3 QLYTDDVKPILQVRRNGVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLA 62 Query: 75 YALYLRNEYEISFDWIYDGEV 95 A L + D ++ + Sbjct: 63 LAFRLAEVLGTTVDKLFLYKQ 83 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 21 KNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|300779104|ref|ZP_07088962.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300504614|gb|EFK35754.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 258 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 44/130 (33%), Gaps = 11/130 (8%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I +R N TQ+E+A S +E G I L + Y IS D + Sbjct: 6 DNIVFLRGKKNMTQQELADLLFLTRSRYVAYEYGRTEPPIEILLRISKFYNISIDLLL-- 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 +D R + L I +K G +QIE +P Y G P Sbjct: 64 -TVDVRKFSIDELMELPENRIVLPIKV--DQDGNNQIEI-----IPQKASMGYLNGYGDP 115 Query: 154 E-IKPARKIK 162 E I+ I Sbjct: 116 EYIESLETIS 125 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +R K M+Q E LL + S YE GRT P I+ +I + +D Sbjct: 1 MSKFSDNIVFLRGKKNMTQQELADLLFLTRSRYVAYEYGRTEPPIEILLRISKFYNISID 60 Query: 171 WIYFGD 176 + D Sbjct: 61 LLLTVD 66 >gi|255093201|ref|ZP_05322679.1| putative regulatory protein [Clostridium difficile CIP 107932] Length = 103 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+ RK N T KE A + E+G + S++ + N IS D + Sbjct: 4 IGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISADVLI 63 Query: 92 DG 93 Sbjct: 64 KD 65 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG RLK RK ++ EF ++G+ ++ E G+ P +K K + D Sbjct: 1 MNYIGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISAD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + ++ + + ++ Sbjct: 61 VLIKDITSTGKTYLENDINEELKDLNSRE 89 >gi|225017725|ref|ZP_03706917.1| hypothetical protein CLOSTMETH_01654 [Clostridium methylpentosum DSM 5476] gi|224949518|gb|EEG30727.1| hypothetical protein CLOSTMETH_01654 [Clostridium methylpentosum DSM 5476] Length = 81 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RI+++R ++ TQ E+A +S +E G I+ + L Y+ S D++ + Sbjct: 9 ERIRNLRIDHDYTQGEIAGLLQISQSTYAQYEVGKRRFPIKLIVKLALFYKTSVDYLLE 67 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++++R D +Q E LL + ST + YE G+ IK K+ K +D++ Sbjct: 7 PYERIRNLRIDHDYTQGEIAGLLQISQSTYAQYEVGKRRFPIKLIVKLALFYKTSVDYLL 66 Query: 174 FGDEVIVPKSIKRAK 188 + P I K Sbjct: 67 ELTDDPHPYWIDEIK 81 >gi|163816098|ref|ZP_02207466.1| hypothetical protein COPEUT_02282 [Coprococcus eutactus ATCC 27759] gi|158448518|gb|EDP25513.1| hypothetical protein COPEUT_02282 [Coprococcus eutactus ATCC 27759] Length = 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ R Q+EM ++ E G S S+ AL + + + I+ Sbjct: 5 NKLKEYRAKLGVNQQEMGALVQTSRQTISQIERGDYSPSVTLALKIAKVCGVRVEDIFQY 64 Query: 94 EVIDR 98 E + Sbjct: 65 EEDEE 69 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +LK R G++Q E G L+ T+S E+G P + A KI +V ++ Sbjct: 1 MPLYNKLKEYRAKLGVNQQEMGALVQTSRQTISQIERGDYSPSVTLALKIAKVCGVRVED 60 Query: 172 IYFGDEVIV 180 I+ +E Sbjct: 61 IFQYEEDEE 69 >gi|56697146|ref|YP_167509.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678883|gb|AAV95549.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 134 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 26/85 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R A +Q E+ V +E+G S + ++ + Sbjct: 8 VGRRIRARRSALGLSQAELGRAVGVRFQQVQKYESGANRVSASRLWAIAEVLDVHISHFF 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 +G + +D Sbjct: 68 EGIQAPDSGVIDGSDAPVDRLMFLQ 92 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+++ R G+SQ E G+ +G+ + YE G I +V H+ + G Sbjct: 10 RRIRARRSALGLSQAELGRAVGVRFQQVQKYESGANRVSASRLWAIAEVLDVHISHFFEG 69 >gi|10803554|ref|NP_045952.1| hypothetical protein VNG7007 [Halobacterium sp. NRC-1] gi|16119985|ref|NP_395573.1| hypothetical protein VNG6009H [Halobacterium sp. NRC-1] gi|169237166|ref|YP_001690372.1| hypothetical protein OE7009F [Halobacterium salinarum R1] gi|2822285|gb|AAC82791.1| unknown [Halobacterium sp. NRC-1] gi|10584071|gb|AAG20708.1| Vng6009h [Halobacterium sp. NRC-1] gi|167728232|emb|CAP15021.1| conserved hypothetical protein (encoded by ISH7/ISH24 subtype 1) [Halobacterium salinarum R1] Length = 65 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R ++ TQ+++A +N E S+ A L ++ S + I+ Sbjct: 3 NELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIFSY 62 Query: 94 EVI 96 + Sbjct: 63 DSD 65 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R ++Q + K +G+ T++ E R P ++ A K+ ++ I+ Sbjct: 1 MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIF 60 Query: 174 FGD 176 D Sbjct: 61 SYD 63 >gi|330465134|ref|YP_004402877.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328808105|gb|AEB42277.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 26/56 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G R++ +R+A + +A A ++ ++ ENG + ++ + + + Sbjct: 28 IGRRVRALREARGISLSALARQAGVGKATLSGLENGTRNPTLETLYAITAQLGVPL 83 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 DP AIG R++++R+ +G+S + G+ +TLS E G P ++ I L Sbjct: 24 DPAAIGRRVRALREARGISLSALARQAGVGKATLSGLENGTRNPTLETLYAITAQLGVPL 83 >gi|327468930|gb|EGF14402.1| transcriptional regulator [Streptococcus sanguinis SK330] Length = 108 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + R+K++R + Q E+A A ++L E G + SI AL + + + Sbjct: 36 KEFMMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFN 94 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E KL G+ T+S E+G P I A KI + ++++ Sbjct: 39 MMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVE 98 Query: 171 WIY 173 ++ Sbjct: 99 NVF 101 >gi|322383862|ref|ZP_08057608.1| phage element-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151636|gb|EFX44710.1| phage element-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 112 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN------QLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +G IK++R + +Q+E+A N + ++ +EN + + +L +++ Sbjct: 5 IGKTIKELRIKHKLSQEELAEKLNKNFGTSINKGMISKWENDLGDPRLETVRHLSMLFDV 64 Query: 86 SFDWIYDGEVIDRR 99 S D++ E + Sbjct: 65 SLDFLLGLEKKEPE 78 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLG------MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 Y+IG +K +R +SQ E + L + +S +E P ++ R + + Sbjct: 3 YSIGKTIKELRIKHKLSQEELAEKLNKNFGTSINKGMISKWENDLGDPRLETVRHLSMLF 62 Query: 166 KKHLDWIYFGDEVIVPKSI 184 LD++ G E P++I Sbjct: 63 DVSLDFLL-GLEKKEPETI 80 >gi|312868402|ref|ZP_07728602.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096147|gb|EFQ54391.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 228 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 10/101 (9%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQK++A A + +E G+ S L + + + Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKQPSREKVQQLEQILNVPKGYFTEL 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 E+ K +++ +G++Q E K Sbjct: 65 EIARLYNILSDEAKD----------QALSYVRGLAQKEKCK 95 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ RK+ M+Q + LG+ S +E+G P + ++++Q+ + Sbjct: 1 MYQPEKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKQPSREKVQQLEQILNVPKGY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|282860479|ref|ZP_06269545.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282564215|gb|EFB69751.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 161 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 8 NLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 11 EYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 68 >gi|257877407|ref|ZP_05657060.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811573|gb|EEV40393.1| predicted protein [Enterococcus casseliflavus EC20] Length = 112 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 32/99 (32%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 + + +T E + R K +R+ + KE+ + Sbjct: 12 TIKREQCEKKALFFKEDRKVTLEEAFLLDTLRCRFKFLREERGLSPKEVCQHLDVSYPDY 71 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRY 100 L+E G + L+ + Y +S D++ RY Sbjct: 72 TLYEAGDRLPDVLTLLHAASLYNVSVDYLLGQTERPERY 110 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 K +R+++G+S E + L + + YE G +P++ + +D++ Sbjct: 47 KFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLL 101 >gi|311739935|ref|ZP_07713769.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305008|gb|EFQ81077.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 437 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI +RK TQ MA S +N EN ++ + L + + + Sbjct: 7 GARIHALRKQRGLTQVAMAKQLGLSTSYLNQLENDQRPLTVTVLMQLAQRFNLDPGYF 64 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + GAR+ ++RK +G++Q+ K LG+ S L+ E + + ++ Q Sbjct: 1 MTKHYAGARIHALRKQRGLTQVAMAKQLGLSTSYLNQLENDQRPLTVTVLMQLAQRFNLD 60 Query: 169 LDWI 172 + Sbjct: 61 PGYF 64 >gi|226307191|ref|YP_002767151.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226186308|dbj|BAH34412.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 268 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 DVGT +K R+ TQ ++ A ++ E G S L+L ++ Sbjct: 7 DVGTELKRWRERRRLTQLGLSAAAGVSTRHLSFIETGRSKPSRDMILHLSECLDVPL 63 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 LK R+ + ++Q+ G+ LS E GR+ P + + L Sbjct: 12 LKRWRERRRLTQLGLSAAAGVSTRHLSFIETGRSKPSRDMILHLSECLDVPL 63 >gi|218675074|ref|ZP_03524743.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 469 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ IR A TQ MA S +NL E +++ L L Y + + + Sbjct: 9 GPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ IR ++Q + L + S L+ E+ + ++ K+ V + L+ + Sbjct: 12 LRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 >gi|254465017|ref|ZP_05078428.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206685925|gb|EDZ46407.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 462 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 30/90 (33%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R+ TQK+ A +N EN S L L E+ + + Sbjct: 9 GAKLREMRQRLELTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGMDVTELSA 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + L +R Sbjct: 69 GDSERLVSDMREAMADPVFADDAPPLADLR 98 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ +R+ ++Q +F LG+ L+ E + Q + Sbjct: 6 LYAGAKLREMRQRLELTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGMDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSAGDSERLVSDMREA 81 >gi|167920201|ref|ZP_02507292.1| putative DNA-binding protein [Burkholderia pseudomallei BCC215] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 32/90 (35%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + R++ +R + +A + S ++L E+ + + L N +S Sbjct: 2 DINQRIARRVRALRDLRGYSLDALAERSKVSRSNISLIEHAQSNPTAVVLERLANALGVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 +++ + R ++ + A Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPA 91 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E ++ P ++ L ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIEHAQSNPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|163838971|ref|YP_001623376.1| Cro/CI family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952447|gb|ABY21962.1| transcriptional regulator, Cro/CI family [Renibacterium salmoninarum ATCC 33209] Length = 191 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 1/116 (0%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + E Q +G+RI+ R+A T + +A + ++ E S S+ + L Sbjct: 3 ALPAEPNQGPVQIGSRIRAARQAQRLTIEHVAEATGLTKGFLSRVERDFTSPSVASLVTL 62 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 IS ++ + L I RL + R ++ + Q+ ++ Sbjct: 63 CEVLAISIGDLFVAPSTHLVRAAEGPRVSLGGEGIIERLLTERSERRL-QVLHAEI 117 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +R+++ R+ + ++ + G+ LS E+ T P + + +V + ++ Sbjct: 17 SRIRAARQAQRLTIEHVAEATGLTKGFLSRVERDFTSPSVASLVTLCEVLAISIGDLF 74 >gi|152985210|ref|YP_001351391.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960368|gb|ABR82393.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 182 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK 49 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KH 168 +GARL++IRK KG+SQ E K G+ NST+S E+ P I +K V Sbjct: 1 MDVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK---VLGGIPMS 57 Query: 169 LDWIYFGD 176 L + D Sbjct: 58 LVEFFSLD 65 >gi|108762155|ref|YP_628901.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108466035|gb|ABF91220.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 134 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 1/100 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ +G ++ R+ TQ ++A E G S+R L Sbjct: 17 EQRLATLIGNAVRAARQRLELTQADVAERVGIATEVYGRLERGHMLPSVRTLRKLCLVLN 76 Query: 85 ISFDWIYDGEVID-RRYEDVTNKKRLDPYAIGARLKSIRK 123 S D + ++ + + + L+++RK Sbjct: 77 CSSDVLLGMAGVEGAPTLAEDPPEYRERPEVRRLLRTVRK 116 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ R+ ++Q + + +G+ E+G +P ++ RK+ V D + Sbjct: 26 NAVRAARQRLELTQADVAERVGIATEVYGRLERGHMLPSVRTLRKLCLVLNCSSDVLL 83 >gi|86356364|ref|YP_468256.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280466|gb|ABC89529.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 469 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ IR A TQ MA S +NL E +++ L L Y + + + Sbjct: 9 GPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ IR ++Q + L + S L+ E+ + ++ K+ V + L+ + Sbjct: 12 LRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 >gi|21222829|ref|NP_628608.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|7635951|emb|CAB88448.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 295 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 21 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRGVRDLCGVYEVEDQ 80 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 81 RIVDSLM--QMAKDSRQQGWWHAFGD 104 Score = 43.4 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 26 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRGVRDLCGVYEV-------E 78 Query: 176 DEVIVPKSIKRAKGNQ 191 D+ IV ++ AK ++ Sbjct: 79 DQRIVDSLMQMAKDSR 94 >gi|150015590|ref|YP_001307844.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902055|gb|ABR32888.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI+++RK TQ E+A N + ENG + S+ A + +EIS + I+ + Sbjct: 4 RIQELRKEKKITQGELADAVNVTRQTIISLENGRYNASLILAHKIAQFFEISIEEIFIFD 63 Query: 95 VIDRR 99 D Sbjct: 64 KEDEN 68 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +RK+K ++Q E + + T+ + E GR + A KI Q + ++ I+ Sbjct: 1 MQTRIQELRKEKKITQGELADAVNVTRQTIISLENGRYNASLILAHKIAQFFEISIEEIF 60 Query: 174 FGDEV 178 D+ Sbjct: 61 IFDKE 65 >gi|313902341|ref|ZP_07835745.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] gi|313467389|gb|EFR62899.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] Length = 435 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R+ TQ+++A G S ++ E + L + Sbjct: 2 IGDRIRARRRELGMTQEQLAAGL-FDRSYISRIEANEVVPPLPTLQLLAGRLGKPVAYFL 60 Query: 92 DGEV 95 E Sbjct: 61 GDED 64 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R+++ R++ GM+Q + L S +S E +P + + + K + + Sbjct: 1 MIGDRIRARRRELGMTQEQLAAGL-FDRSYISRIEANEVVPPLPTLQLLAGRLGKPVAYF 59 Query: 173 YFGDEVIVPKSI 184 ++ + Sbjct: 60 LGDEDAFTRSRV 71 >gi|311107897|ref|YP_003980750.1| hypothetical protein AXYL_04722 [Achromobacter xylosoxidans A8] gi|310762586|gb|ADP18035.1| helix-turn-helix family protein 9 [Achromobacter xylosoxidans A8] Length = 194 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R A T K+ A S ++ EN + S + + + E+ ++ Sbjct: 9 LAQRLRALRHARAWTLKQAAAATGVSASTLSKIENSLLSPTYDNLIKIAAGLELDVAELF 68 Query: 92 D 92 Sbjct: 69 T 69 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL+++R + + + G+ STLS E P KI + + ++ Sbjct: 11 QRLRALRHARAWTLKQAAAATGVSASTLSKIENSLLSPTYDNLIKIAAGLELDVAELFT 69 >gi|296119241|ref|ZP_06837810.1| transcriptional regulator, Cro/CI family [Corynebacterium ammoniagenes DSM 20306] gi|295967762|gb|EFG81018.1| transcriptional regulator, Cro/CI family [Corynebacterium ammoniagenes DSM 20306] Length = 72 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 25/70 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R +Q+++A + E G S+ A L ++E + ++ Sbjct: 3 NNLKAFRDKAGLSQQKLADALGVSRQTIISIEKGRYDPSLPLAFQLAAKFECLIEDLFIP 62 Query: 94 EVIDRRYEDV 103 E+ + Sbjct: 63 ELPTADEDGE 72 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+ R G+SQ + LG+ T+ + E+GR P + A ++ + ++ ++ Sbjct: 3 NNLKAFRDKAGLSQQKLADALGVSRQTIISIEKGRYDPSLPLAFQLAAKFECLIEDLFIP 62 Query: 176 D 176 + Sbjct: 63 E 63 >gi|291445471|ref|ZP_06584861.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291348418|gb|EFE75322.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 285 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDV 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHAFGD 94 >gi|317131466|ref|YP_004090780.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469445|gb|ADU26049.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 251 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 38/105 (36%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E + + ++++ TQ+++A AV +++G I L Sbjct: 1 MADERKNENRIFAKHLRELLDNAGHTQQDVADYVGVTRQAVAQWKDGKTIPDINNFRALA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 +E+ ++++ R A L+S R+++ Sbjct: 61 RFFEVPYEYLIGDTESRVREHFDLADTLGLSDAAIHALQSYRREQ 105 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 39/86 (45%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + ++++ + L+ + + G +Q + +G+ ++ ++ G+TIP+I R + Sbjct: 1 MADERKNENRIFAKHLRELLDNAGHTQQDVADYVGVTRQAVAQWKDGKTIPDINNFRALA 60 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAK 188 + + +++ E V + A Sbjct: 61 RFFEVPYEYLIGDTESRVREHFDLAD 86 >gi|254292729|ref|YP_003058752.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041260|gb|ACT58055.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 72 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K R + +SQ LL + +++ E G+ P + A KI ++ + ++ I+ Sbjct: 1 MKNHIKVFRAHRKISQAALADLLDVSRQSINAIETGKYDPSLPLAFKIARLFEVPIEEIF 60 Query: 174 FGD 176 + Sbjct: 61 EYE 63 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK R +Q +A + ++N E G S+ A + +E+ + I++ Sbjct: 3 NHIKVFRAHRKISQAALADLLDVSRQSINAIETGKYDPSLPLAFKIARLFEVPIEEIFEY 62 Query: 94 EVI 96 E Sbjct: 63 EAD 65 >gi|253987942|ref|YP_003039298.1| transcription regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779392|emb|CAQ82553.1| similar to transcription regulator and to restriction enzyme contro elements [Photorhabdus asymbiotica] Length = 78 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +R+++ +Q+ A + ++ E G+ + ++ + + +I ++ Sbjct: 11 FGQRVRHLRQSSGMSQEAFADKCGIDRTYISGIERGIRNPTLEVINIIASGLQIELTDLF 70 Query: 92 D 92 D Sbjct: 71 D 71 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R++ +R+ GMSQ F G+ + +S E+G P ++ I + L ++ Sbjct: 11 FGQRVRHLRQSSGMSQEAFADKCGIDRTYISGIERGIRNPTLEVINIIASGLQIELTDLF 70 >gi|228950520|ref|ZP_04112670.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809156|gb|EEM55627.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 116 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 41/90 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+IR + +Q+ A + V+L E+G S + N +S D++ Sbjct: 6 IGIRVKEIRNSLAMSQQSFADAIEVSKGMVSLIESGKKKPSRETVSKISNLGNVSADYVM 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E +++ + + + + ++++ + Sbjct: 66 GLSDYKNLNESQSSEVKTELHDMISKIEKL 95 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG R+K IR MSQ F + + +S E G+ P + KI + Sbjct: 1 MIENIIGIRVKEIRNSLAMSQQSFADAIEVSKGMVSLIESGKKKPSRETVSKISNLGNVS 60 Query: 169 LDWIY 173 D++ Sbjct: 61 ADYVM 65 >gi|229011075|ref|ZP_04168269.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] gi|228750247|gb|EEM00079.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] Length = 405 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 5 LGEKIKTLRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 92 DGEVIDRRYEDVT 104 + + ++ Sbjct: 64 EEDDVEIVEIIQQ 76 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 7 EKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + + I+ + Q K +K D+ Sbjct: 66 DDVEIVEIIQ--QMEQLIKANKCDE 88 >gi|229153416|ref|ZP_04281594.1| Transcription regulator, probable-related protein [Bacillus cereus m1550] gi|228630020|gb|EEK86671.1| Transcription regulator, probable-related protein [Bacillus cereus m1550] Length = 68 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K RK+ +Q E+A N +NL EN + S+ + L E + ++ Sbjct: 7 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALETDLNSLF 64 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K RK +G+SQ+E K + + T++ E + P + ++ + + L+ ++ Sbjct: 5 YLNNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALETDLNSLF 64 Query: 174 FG 175 + Sbjct: 65 WE 66 >gi|262199984|ref|YP_003271193.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262083331|gb|ACY19300.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 199 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 3/103 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + K +G ++ R A TQ++ A + E G SI + + + Sbjct: 3 KDLAKTIGRAAREARTALQLTQEDAAERIHVSVEFYARIERGKSLPSIGTFARIVSALGV 62 Query: 86 SFDWIYDGEVIDRR---YEDVTNKKRLDPYAIGARLKSIRKDK 125 S D + + + + +RK + Sbjct: 63 SADALLGARPPIATVAAGMPALWTPPSESPEMRRLSRRLRKAR 105 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 22/55 (40%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R ++Q + + + + + E+G+++P I +I D + Sbjct: 14 REARTALQLTQEDAAERIHVSVEFYARIERGKSLPSIGTFARIVSALGVSADALL 68 >gi|269798478|ref|YP_003312378.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269095107|gb|ACZ25098.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 153 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 28/83 (33%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R K+Q E+A +A++ +E G + L Y ++ D + D Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDELLDV 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGA 116 + + + Y Sbjct: 65 NGEEHEPIYDLSPVLKNKYIAYK 87 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK R G SQIE K +G+ N+ LSNYE G P++ + + LD Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60 Query: 172 IY--FGDE 177 + G+E Sbjct: 61 LLDVNGEE 68 >gi|189350245|ref|YP_001945873.1| putative bacteriophage repressor protein CI [Burkholderia multivorans ATCC 17616] gi|189334267|dbj|BAG43337.1| putative bacteriophage repressor protein CI [Burkholderia multivorans ATCC 17616] Length = 246 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + R++D R+ + +Q ++A A ++ + E+G S ++ L + ++ Sbjct: 1 MRSLAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGS-KHLLSIARALGVNPA 59 Query: 89 WI 90 W+ Sbjct: 60 WL 61 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ RL+ R++K +SQ + G+ +T++N E GR K I + + Sbjct: 1 MRSLAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGS-KHLLSIARALGVNPA 59 Query: 171 WI 172 W+ Sbjct: 60 WL 61 >gi|182438050|ref|YP_001825769.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778693|ref|ZP_08237958.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178466566|dbj|BAG21086.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659026|gb|EGE43872.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 285 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDH 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHAFGD 94 >gi|167912242|ref|ZP_02499333.1| DNA-binding protein [Burkholderia pseudomallei 112] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E + + L N +S ++ Sbjct: 7 IARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLF 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + R ++ + A Sbjct: 67 EDDRAARAASPLSRATEQPVWKDPA 91 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|167825520|ref|ZP_02456991.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|217421247|ref|ZP_03452752.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226193747|ref|ZP_03789349.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|217396659|gb|EEC36676.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225934052|gb|EEH30037.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E + + L N +S ++ Sbjct: 7 IARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLF 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + R ++ + A Sbjct: 67 EDDRAARAASPLSRATEQPVWKDPA 91 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|167720910|ref|ZP_02404146.1| DNA-binding protein [Burkholderia pseudomallei DM98] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E + + L N +S ++ Sbjct: 7 IARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLF 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + R ++ + A Sbjct: 67 EDDRAARAASPLSRATEQPVWKDPA 91 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|116695851|ref|YP_841427.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha H16] gi|113530350|emb|CAJ96697.1| Transcriptional Regulator [Ralstonia eutropha H16] Length = 320 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 18/161 (11%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G R++++R T+K A A E + E G + SI ++ + + S Sbjct: 34 FLVALGERVRELRACRGLTRKAAAQAAGVSERHLANLEYGSGNASILVLQHIADALQCSL 93 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR----KDKGMSQIEFGKLL------- 136 + I + + L + A L+ +R + G G+ Sbjct: 94 AGLLG--DITTSSPEWILLRELLEHRDEATLRRVRIAVGEMLGTGGENAGQAARSPRVAL 151 Query: 137 ----GMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWI 172 G STL P I+ +R+I++ + I Sbjct: 152 IGLRGAGKSTLGGMLAEDLDFPFIELSREIEKFAGCSISEI 192 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 31/89 (34%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 K A+G R++ +R +G+++ + G+ L+N E G I Sbjct: 20 DSDARAANGTDKNPFLVALGERVRELRACRGLTRKAAAQAAGVSERHLANLEYGSGNASI 79 Query: 156 KPARKIKQVTKKHLDWIYFGDEVIVPKSI 184 + I + L + P+ I Sbjct: 80 LVLQHIADALQCSLAGLLGDITTSSPEWI 108 >gi|53718202|ref|YP_107188.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167737073|ref|ZP_02409847.1| putative DNA-binding protein [Burkholderia pseudomallei 14] gi|167814187|ref|ZP_02445867.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|52208616|emb|CAH34552.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 125 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I +RK TQ +A + V+ FE G + L E S+ + Sbjct: 9 IGRNIASVRKQRGLTQAAVAEQIDVDAETVSRFERGAVMPGVATLERLCAVLECSWMDLL 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 +G D + + L+P A RL Sbjct: 69 EGSSGDAQQVAHDIVRLLEPLAGDDRL 95 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG + S+RK +G++Q + + + T+S +E+G +P + ++ V + + Sbjct: 8 VIGRNIASVRKQRGLTQAAVAEQIDVDAETVSRFERGAVMPGVATLERLCAVLECSWMDL 67 Query: 173 YFG 175 G Sbjct: 68 LEG 70 >gi|145220707|ref|YP_001131385.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442341|ref|YP_004075220.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] gi|145213193|gb|ABP42597.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] gi|315260644|gb|ADT97385.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] Length = 182 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+G+ I+ R+A + +++A A ++ E G+ S + +S + Sbjct: 19 QDIGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEV 78 Query: 90 IY 91 +Y Sbjct: 79 LY 80 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 35/88 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + ++S R+ +S + + G+ N LS E+G P +I + + + +Y Sbjct: 23 SFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVLYIQ 82 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 ++ P + + + +++ Sbjct: 83 AGILEPGDTNEVRDAIITDMAINERQKQ 110 >gi|126452632|ref|YP_001067412.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|242317409|ref|ZP_04816425.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|126226274|gb|ABN89814.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|242140648|gb|EES27050.1| DNA-binding protein [Burkholderia pseudomallei 1106b] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E + + L N +S ++ Sbjct: 7 IARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLF 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + R ++ + A Sbjct: 67 EDDRAARAASPLSRATEQPVWKDPA 91 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|157158980|ref|YP_001463318.1| transcriptional repressor DicA [Escherichia coli E24377A] gi|157081010|gb|ABV20718.1| putative transcriptional regulator DicA [Escherichia coli E24377A] Length = 131 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL RK G++Q + ++G + ++ +E G+ P+ + + K W+ Sbjct: 1 MLSDRLSQRRKQLGLTQQQLADMVGRSSVSVFKWESGQNEPKGQNLLALANALKCSATWL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSK 197 FGDE P + S++ + Sbjct: 61 LFGDEDQAPTPVDELPTELDSRQKR 85 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ RK TQ+++A + +V +E+G + L L N + S W+ Sbjct: 2 LSDRLSQRRKQLGLTQQQLADMVGRSSVSVFKWESGQNEPKGQNLLALANALKCSATWLL 61 Query: 92 DGEVIDRRYEDVTNKKRLD 110 G+ LD Sbjct: 62 FGDEDQAPTPVDELPTELD 80 >gi|126438464|ref|YP_001060149.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126217957|gb|ABN81463.1| DNA-binding protein [Burkholderia pseudomallei 668] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E + + L N +S ++ Sbjct: 7 IARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLF 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + R ++ + A Sbjct: 67 EDDRAARAASPLSRATEQPVWKDPA 91 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|53725534|ref|YP_103601.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|67643873|ref|ZP_00442616.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|76811218|ref|YP_334564.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|121600358|ref|YP_992235.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126450800|ref|YP_001081418.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134280073|ref|ZP_01766784.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|167000869|ref|ZP_02266674.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167739889|ref|ZP_02412663.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167847008|ref|ZP_02472516.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|167895592|ref|ZP_02482994.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|254175429|ref|ZP_04882089.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254191730|ref|ZP_04898233.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254196114|ref|ZP_04902539.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254202294|ref|ZP_04908657.1| DNA-binding protein [Burkholderia mallei FMH] gi|254207627|ref|ZP_04913977.1| DNA-binding protein [Burkholderia mallei JHU] gi|254259704|ref|ZP_04950758.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|254356472|ref|ZP_04972748.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52428957|gb|AAU49550.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|76580671|gb|ABA50146.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|121229168|gb|ABM51686.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126243670|gb|ABO06763.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134248080|gb|EBA48163.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|147746541|gb|EDK53618.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751521|gb|EDK58588.1| DNA-binding protein [Burkholderia mallei JHU] gi|148025469|gb|EDK83623.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157939401|gb|EDO95071.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160696473|gb|EDP86443.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169652858|gb|EDS85551.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|238525329|gb|EEP88757.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243063295|gb|EES45481.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254218393|gb|EET07777.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 195 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E + + L N +S ++ Sbjct: 7 IARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLF 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + R ++ + A Sbjct: 67 EDDRAARAASPLSRATEQPVWKDPA 91 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|327393838|dbj|BAK11260.1| putative HTH-type transcriptional regulator YdcN [Pantoea ananatis AJ13355] Length = 181 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 26/68 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +G +K +R+AN + A ++ + E G S ++ + + Sbjct: 1 MENLHQYLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFN 60 Query: 85 ISFDWIYD 92 + F + Sbjct: 61 VPFSFFVH 68 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G LK +R+ G S + G+ + L E+G + P + KI Sbjct: 5 HQYLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFS 64 Query: 171 WIY 173 + Sbjct: 65 FFV 67 >gi|308174255|ref|YP_003920960.1| post-exponential-phase response transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307607119|emb|CBI43490.1| transcriptional regulator for post-exponential-phase response [Bacillus amyloliquefaciens DSM 7] gi|328912595|gb|AEB64191.1| transcriptional regulator for post-exponential-phase response [Bacillus amyloliquefaciens LL3] Length = 113 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 4/108 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK RK + E+A A +S ++ E + SI++ + ++S + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 91 YDGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 D + D + + K D G K R+ + + Sbjct: 64 LDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLEYQKWRKAQK 111 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDWIY 173 R+K RK+KG S E + G+ S LS+ E+ +T P I+ K+ V + + Sbjct: 6 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLL 64 >gi|291617399|ref|YP_003520141.1| YdcN [Pantoea ananatis LMG 20103] gi|291152429|gb|ADD77013.1| YdcN [Pantoea ananatis LMG 20103] Length = 181 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 26/68 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +G +K +R+AN + A ++ + E G S ++ + + Sbjct: 1 MENLHQYLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFN 60 Query: 85 ISFDWIYD 92 + F + Sbjct: 61 VPFSFFVH 68 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G LK +R+ G S + G+ + L E+G + P + KI Sbjct: 5 HQYLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFS 64 Query: 171 WIY 173 + Sbjct: 65 FFV 67 >gi|228945385|ref|ZP_04107740.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814357|gb|EEM60623.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 403 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVID 97 + + + Sbjct: 63 EEDDDE 68 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEIVELIQKMEQLIKNK 83 >gi|229121334|ref|ZP_04250565.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] gi|228662179|gb|EEL17788.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] Length = 403 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVID 97 + + + Sbjct: 63 EEDDDE 68 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEIVELIQKMERLIKNK 83 >gi|256822716|ref|YP_003146679.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796255|gb|ACV26911.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 242 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 34/86 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R ++ TQ E A +S ++ EN S L YE++ D + Sbjct: 3 LGEKLRSLRSTSSWTQPEFARKLGIEQSYLSKMENDKSIPSTEMFDKLCTAYEVTPDEML 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 + +++ + + + Sbjct: 63 KDLDREYIRQNLMHIPIIANNSNSKH 88 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +L+S+R +Q EF + LG+ S LS E ++IP + K+ + D Sbjct: 1 MTLGEKLRSLRSTSSWTQPEFARKLGIEQSYLSKMENDKSIPSTEMFDKLCTAYEVTPDE 60 Query: 172 IYFG 175 + Sbjct: 61 MLKD 64 >gi|49474962|ref|YP_033003.1| hypothetical protein BH01480 [Bartonella henselae str. Houston-1] gi|49237767|emb|CAF26960.1| hypothetical protein BH01480 [Bartonella henselae str. Houston-1] Length = 180 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 1/117 (0%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKT-QKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + + ++ R +++R+ T +K+ A ++ +E G+ + Sbjct: 1 MARPETEPKTELAKRFREVRRILGFTERKQFAEHLGVTAGSIGTYETGVSEPTASALSKY 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + +S DW+ G P AI A L + K+ Sbjct: 61 QEICGVSLDWLVTGNGEMFTDMAKAKAAGFKPQAIPAGLMKRLGHLAYTTYHDAKIT 117 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 119 KSIRKDKGM-SQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + +R+ G + +F + LG+ ++ YE G + P K +++ LDW+ G+ Sbjct: 17 REVRRILGFTERKQFAEHLGVTAGSIGTYETGVSEPTASALSKYQEICGVSLDWLVTGNG 76 Query: 178 VIVPKSIK 185 + K Sbjct: 77 EMFTDMAK 84 >gi|330508360|ref|YP_004384788.1| Helix-turn-helix protein [Methanosaeta concilii GP-6] gi|328929168|gb|AEB68970.1| Helix-turn-helix protein [Methanosaeta concilii GP-6] Length = 70 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K +R G++Q E +++G+ T+ E+G+ P +K A KI + +D Sbjct: 1 MVLRTHIKELRARHGLTQEELARMVGVRRETILFLEKGKYNPSLKLACKIALALQASIDE 60 Query: 172 IYFGDEVIVP 181 I+ +E + Sbjct: 61 IFIFEEEDLK 70 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK++R + TQ+E+A + E G + S++ A + + S D I+ E Sbjct: 7 IKELRARHGLTQEELARMVGVRRETILFLEKGKYNPSLKLACKIALALQASIDEIFIFEE 66 Query: 96 ID 97 D Sbjct: 67 ED 68 >gi|319898343|ref|YP_004158436.1| transcriptional regulator [Bartonella clarridgeiae 73] gi|319402307|emb|CBI75846.1| transcriptional regulator [Bartonella clarridgeiae 73] Length = 137 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 2/99 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGTRI+ R TQ+++ + +E G + ++ + + Sbjct: 15 VGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQAIAEIMDVPVSYFF 74 Query: 92 DG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + + ++ ++ + ++ +R +S Sbjct: 75 DKGIGIQSVEGFEESDNNFMNFCSSSEGIQLMRAFTNIS 113 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 +D Y ++ R G++Q + G+ LG+ + YE+G + I + Sbjct: 6 KKPDPIDIYVGTR-IRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQAIAE 64 Query: 164 VTKKHLDWIY 173 + + + + Sbjct: 65 IMDVPVSYFF 74 >gi|309774592|ref|ZP_07669617.1| helix-turn-helix domain-containing protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917623|gb|EFP63338.1| helix-turn-helix domain-containing protein [Erysipelotrichaceae bacterium 3_1_53] Length = 266 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++A + +SA+ +E S + L YE+S D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEETHLSKSALGSYEGDKFKDISHYALIQLAKFYEVSVDYL 64 Query: 91 YDGEVIDRRYEDV 103 Sbjct: 65 LGRSQTKNHPNAD 77 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + S L +YE + ++ + + +D Sbjct: 3 LSIQERLKDLRVERGLTLEQLAEETHLSKSALGSYEGDKFKDISHYALIQLAKFYEVSVD 62 Query: 171 WIY 173 ++ Sbjct: 63 YLL 65 >gi|311744324|ref|ZP_07718128.1| PbsX family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312497|gb|EFQ82410.1| PbsX family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 167 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R+ + ++++ A+ ++ E G+ S + IS + +Y Sbjct: 37 LGEYLREQRRQAQLSLRQLSEAADVSNPYLSQIERGLRRPSAEVLQQIAKALRISAESLY 96 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + + + N LS E+G P + ++I + + + +Y Sbjct: 39 EYLREQRRQAQLSLRQLSEAADVSNPYLSQIERGLRRPSAEVLQQIAKALRISAESLY 96 >gi|288917740|ref|ZP_06412103.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288350955|gb|EFC85169.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 254 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 26/67 (38%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + + ++ +R T E+A + + ++ EN S S+ L ++ Sbjct: 63 RLERAIAGNVRRLRHDRGLTLAELAARSGVSSAMISKVENASISCSLTTLDRLAETLDVP 122 Query: 87 FDWIYDG 93 ++ G Sbjct: 123 VTSLFRG 129 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 30/75 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI ++ +R D+G++ E G+ ++ +S E + ++ + + + Sbjct: 67 AIAGNVRRLRHDRGLTLAELAARSGVSSAMISKVENASISCSLTTLDRLAETLDVPVTSL 126 Query: 173 YFGDEVIVPKSIKRA 187 + G + RA Sbjct: 127 FRGADAAREAVFTRA 141 >gi|257053231|ref|YP_003131064.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256691994|gb|ACV12331.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 75 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 + + R+A+ +Q+ +A +N E S+ L +E+ + ++ +V Sbjct: 5 LTEYREASGLSQRALAEHVAVTRQTINAVEGNRYDPSVELVFKLAAFFEVPVEDLFHPDV 64 Query: 96 I 96 Sbjct: 65 E 65 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 27/65 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L R+ G+SQ + + + T++ E R P ++ K+ + ++ ++ Sbjct: 3 NSLTEYREASGLSQRALAEHVAVTRQTINAVEGNRYDPSVELVFKLAAFFEVPVEDLFHP 62 Query: 176 DEVIV 180 D + Sbjct: 63 DVELE 67 >gi|251810407|ref|ZP_04824880.1| phage repressor protein [Staphylococcus epidermidis BCM-HMP0060] gi|251806011|gb|EES58668.1| phage repressor protein [Staphylococcus epidermidis BCM-HMP0060] Length = 240 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 11/100 (11%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGAN-----------QLESAVNLFENGMCSTS 72 + G RI+ +RK T ++++ + + ++ +EN Sbjct: 11 DKELKQMTFGDRIRKLRKQKGLTLQQLSDELHEQFPAKDKKNSFTKGKLSNWENDKSEPI 70 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPY 112 + L + +S D++ E E V ++ Y Sbjct: 71 AKTVSQLATYFGVSMDYLIGLEDDIVPLETVHQYYQVPFY 110 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 11/91 (12%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-----------MPNSTLSNYEQGR 150 N K L G R++ +RK KG++ + L LSN+E + Sbjct: 7 RKINDKELKQMTFGDRIRKLRKQKGLTLQQLSDELHEQFPAKDKKNSFTKGKLSNWENDK 66 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 + P K ++ +D++ ++ IVP Sbjct: 67 SEPIAKTVSQLATYFGVSMDYLIGLEDDIVP 97 >gi|251779839|ref|ZP_04822759.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084154|gb|EES50044.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 167 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 60/171 (35%), Gaps = 8/171 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G +IK +R++ N ++ E+A + + + ENG + S+ + +I D + Sbjct: 4 IGNKIKTLRESKNISKSELARKIEVSPAYITMLENGTKTNPSLEILNKISFALDIPLDKL 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + + + + L + + K+ G T + Sbjct: 64 VNSKEKPVKNLKFDIFELMSAKEREKELHHKGQSESKEINTSNKITG--KFTFNEILSDI 121 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 P +K D + ++++ + R ++ K+DK+ Sbjct: 122 NSPT----HLLKNFFSVDTDSL-TDEQIVEIMNAIRFTIKLKLEEFKRDKE 167 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHL 169 IG ++K++R+ K +S+ E + + + + ++ E +T P ++ KI L Sbjct: 1 MNTIGNKIKTLRESKNISKSELARKIEVSPAYITMLENGTKTNPSLEILNKISFALDIPL 60 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 D + E V S+K+ +K+ Sbjct: 61 DKLVNSKEKPVKNLKFDIFELMSAKEREKELHHK 94 >gi|227486486|ref|ZP_03916802.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235534|gb|EEI85549.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 77 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ RK +Q + +++N E G S++ A + N + I+D Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCIYQIFDL 62 Query: 94 EVIDRRYEDVTNKKR 108 + R K+ Sbjct: 63 DGTGRYRCSKCQTKQ 77 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK G+SQ GK +G+ ++++ E G+TIP +K A I + I+ Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCIYQIFDL 62 Query: 176 D 176 D Sbjct: 63 D 63 >gi|27376226|ref|NP_767755.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349366|dbj|BAC46380.1| blr1115 [Bradyrhizobium japonicum USDA 110] Length = 196 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 26/79 (32%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + +G R+K +R T E+A + + + E S + L Sbjct: 5 DQQKLDRAIGRRLKTLRTQAGMTLNELAGRSGVSRAMIGRVERAQSSATAALLNKLCAAL 64 Query: 84 EISFDWIYDGEVIDRRYED 102 +++ + Sbjct: 65 DVTLSDVVALAEKPPERLM 83 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 4/87 (4%) Query: 106 KKRLDPY----AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 K +D AIG RLK++R GM+ E G+ + + E+ ++ K+ Sbjct: 1 MKTMDQQKLDRAIGRRLKTLRTQAGMTLNELAGRSGVSRAMIGRVERAQSSATAALLNKL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAK 188 L + E + ++ A Sbjct: 61 CAALDVTLSDVVALAEKPPERLMRLAD 87 >gi|223934040|ref|ZP_03625993.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223897297|gb|EEF63705.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 61 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 36/60 (60%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 +R ++Q + G+L+G+ T +N+E+G+T P++K A KI + +D I F D + V Sbjct: 2 LRARDNLTQKQAGQLVGVTADTWANWEKGKTNPDVKTAYKIAENFGLSIDDIIFLDSIAV 61 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +R +N TQK+ +E G + ++ A + + +S D I Sbjct: 2 LRARDNLTQKQAGQLVGVTADTWANWEKGKTNPDVKTAYKIAENFGLSIDDIIF 55 >gi|322387384|ref|ZP_08060994.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321141913|gb|EFX37408.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 64 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 36/64 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK +G+ Q + K+LG+ T+ E + P ++ A KI ++ + H++ I+ Sbjct: 1 MKNNIKQLRKSEGLRQEDMAKILGVSRQTIIAIENDKYNPTLELAMKIARLLRLHVEEIF 60 Query: 174 FGDE 177 ++ Sbjct: 61 ILED 64 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RK+ Q++MA + EN + ++ A+ + + + I+ Sbjct: 3 NNIKQLRKSEGLRQEDMAKILGVSRQTIIAIENDKYNPTLELAMKIARLLRLHVEEIFIL 62 Query: 94 EV 95 E Sbjct: 63 ED 64 >gi|228902066|ref|ZP_04066230.1| HTH-type transcriptional regulator PuuR [Bacillus thuringiensis IBL 4222] gi|228857492|gb|EEN01988.1| HTH-type transcriptional regulator PuuR [Bacillus thuringiensis IBL 4222] Length = 68 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +RK +Q+E+ N S VNL ENG + L + + +++S D ++ Sbjct: 6 GKKLYLLRKNRGFSQRELGELLNCSHSLVNLMENGKLQPTTAKLLGISSIFKVSIDELF 64 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G +L +RK++G SQ E G+LL +S ++ E G+ P I + K +D + Sbjct: 4 FDGKKLYLLRKNRGFSQRELGELLNCSHSLVNLMENGKLQPTTAKLLGISSIFKVSIDEL 63 Query: 173 Y 173 + Sbjct: 64 F 64 >gi|228937919|ref|ZP_04100546.1| Transcription regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228962246|ref|ZP_04123679.1| Transcription regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228970800|ref|ZP_04131440.1| Transcription regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977375|ref|ZP_04137770.1| Transcription regulator [Bacillus thuringiensis Bt407] gi|228782352|gb|EEM30535.1| Transcription regulator [Bacillus thuringiensis Bt407] gi|228788925|gb|EEM36864.1| Transcription regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228797415|gb|EEM44595.1| Transcription regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228821710|gb|EEM67711.1| Transcription regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938399|gb|AEA14295.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 114 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N TQ+ + + +E+ S L + E++ D++ Sbjct: 3 IGARIKKLRKQRNWTQEILGKKVGASSRVIGYYESEERFPSPDTIAKLSDTLEVTTDFLL 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K+ + Sbjct: 63 GRGNELDIKKHTKFKEIM 80 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGAR+K +RK + +Q GK +G + + YE P K+ + D+ Sbjct: 1 MGIGARIKKLRKQRNWTQEILGKKVGASSRVIGYYESEERFPSPDTIAKLSDTLEVTTDF 60 Query: 172 IY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + G+E+ + K K + + ++K+ Sbjct: 61 LLGRGNELDIKKHTKFKEIMERLDTLPEEKQE 92 >gi|255601036|ref|XP_002537591.1| conserved hypothetical protein [Ricinus communis] gi|223515814|gb|EEF24793.1| conserved hypothetical protein [Ricinus communis] Length = 109 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+ R A K+Q+ +A A ++ E G+ + S+ + ++ ++ Sbjct: 20 LGKRLKECRHAAEKSQETLAFEAGVDRVYISSIERGLANPSVETLATICYSLGVTLGELF 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + A +K R Sbjct: 80 TPLDKVSLKPTGQRRAN---AATPPEIKRSR 107 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 2/87 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G RLK R SQ G+ +S+ E+G P ++ I L + Sbjct: 19 ALGKRLKECRHAAEKSQETLAFEAGVDRVYISSIERGLANPSVETLATICYSLGVTLGEL 78 Query: 173 YF--GDEVIVPKSIKRAKGNQSSKKSK 197 + + P +RA + + Sbjct: 79 FTPLDKVSLKPTGQRRANAATPPEIKR 105 >gi|166033445|ref|ZP_02236274.1| hypothetical protein DORFOR_03171 [Dorea formicigenerans ATCC 27755] gi|225374572|ref|ZP_03751793.1| hypothetical protein ROSEINA2194_00187 [Roseburia inulinivorans DSM 16841] gi|166026630|gb|EDR45387.1| hypothetical protein DORFOR_03171 [Dorea formicigenerans ATCC 27755] gi|225213632|gb|EEG95986.1| hypothetical protein ROSEINA2194_00187 [Roseburia inulinivorans DSM 16841] gi|291524361|emb|CBK89948.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 118 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 43/110 (39%), Gaps = 4/110 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK TQ+E++ ++ + E G + S L IS D + Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 + +V ++ N+ ++ + ++ +Q +L + Sbjct: 69 NPDVS--LEDEGVNQMKMLYSSCPPEMRD--TLLHHTQETVKELTELSKK 114 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK+K ++Q E L + ++N E+G+ P R + +V L Sbjct: 5 DLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISL 64 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSS 193 D + D + + + + K SS Sbjct: 65 DTLINPDVSLEDEGVNQMKMLYSS 88 >gi|85704680|ref|ZP_01035782.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85671088|gb|EAQ25947.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 465 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 28/90 (31%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++ R+ TQK+ A +N EN S L L E+ + Sbjct: 9 GAKLRETRQRLGLTQKDFAGKLGVSLPYLNQMENNNRPLSTTVVLALAQEFGFDVTELST 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + L +R Sbjct: 69 GDAERMVSDMREALADPVFGDDPPPLADLR 98 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ R+ G++Q +F LG+ L+ E + Q + Sbjct: 6 LYAGAKLRETRQRLGLTQKDFAGKLGVSLPYLNQMENNNRPLSTTVVLALAQEFGFDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSTGDAERMVSDMREA 81 >gi|69246897|ref|ZP_00604172.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257879186|ref|ZP_05658839.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881995|ref|ZP_05661648.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890016|ref|ZP_05669669.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615585|ref|ZP_05713355.1| transcriptional regulator, xre family protein [Enterococcus faecium DO] gi|260560167|ref|ZP_05832344.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|293559524|ref|ZP_06676061.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1162] gi|294621805|ref|ZP_06700963.1| transcriptional regulator, xre family, putative [Enterococcus faecium U0317] gi|314947447|ref|ZP_07850866.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|68195026|gb|EAN09490.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257813414|gb|EEV42172.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817653|gb|EEV44981.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826376|gb|EEV53002.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073734|gb|EEW62059.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291598588|gb|EFF29647.1| transcriptional regulator, xre family, putative [Enterococcus faecium U0317] gi|291606586|gb|EFF35983.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1162] gi|313646105|gb|EFS10685.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 221 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 G +I+ R+ TQKE+ + ++ +EN + L + + D Sbjct: 4 GEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPID 59 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G ++++ R++ ++Q E G+ +G+ + T+S++E RT+P+++ + +D+ Sbjct: 1 MNTGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 Query: 172 --IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I E I P N+ S SK+ Sbjct: 61 PSIESATESIEPTLPDEPLVNKKSYSSKQ 89 >gi|329894642|ref|ZP_08270447.1| Transcriptional regulator [gamma proteobacterium IMCC3088] gi|328922898|gb|EGG30227.1| Transcriptional regulator [gamma proteobacterium IMCC3088] Length = 68 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I++ R+ TQ+++A +N E G S+ A L ++ + ++ Sbjct: 3 NNIREKRQELGLTQQDLARLVGVSRQTINAIETGKFDPSLSLAFKLSGVFKEPVEALFKP 62 Query: 94 EVIDRR 99 I+ Sbjct: 63 TQINPS 68 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 34/61 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ R++ G++Q + +L+G+ T++ E G+ P + A K+ V K+ ++ ++ Sbjct: 1 MINNIREKRQELGLTQQDLARLVGVSRQTINAIETGKFDPSLSLAFKLSGVFKEPVEALF 60 Query: 174 F 174 Sbjct: 61 K 61 >gi|326384044|ref|ZP_08205727.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197204|gb|EGD54395.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 156 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+G I+ R + + +++A A ++ E G+ S + +S + Sbjct: 25 QDIGEFIRSQRLSAKVSLRQLAERAGVSNPYLSQIERGLRKPSADVLSQIAKGLRVSAEV 84 Query: 90 IY 91 +Y Sbjct: 85 LY 86 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++S R +S + + G+ N LS E+G P +I + + + +Y Sbjct: 29 EFIRSQRLSAKVSLRQLAERAGVSNPYLSQIERGLRKPSADVLSQIAKGLRVSAEVLY 86 >gi|322391684|ref|ZP_08065152.1| transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145495|gb|EFX40888.1| transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 69 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R + M+Q + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MAKNLKLKLARVELDMTQSDLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVELDMTQSDLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 >gi|255526730|ref|ZP_05393632.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296187021|ref|ZP_06855421.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255509565|gb|EET85903.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296048459|gb|EFG87893.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 235 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + ++G RI+ RKA T +E+A + ++ V+ +E G I + Sbjct: 1 MEEISIEIGKRIRSFRKAKKMTIQELADQIYKSKATVSKYEKGEIVIDIVTLYNVAKVLR 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNK 106 I D + E + K Sbjct: 61 IHVDQLLYCEPNGVEIQIEGKK 82 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R++S RK K M+ E + +T+S YE+G + +I + +V + H+D Sbjct: 6 IEIGKRIRSFRKAKKMTIQELADQIYKSKATVSKYEKGEIVIDIVTLYNVAKVLRIHVDQ 65 Query: 172 IYFGDEVIVPKSIKRAK 188 + + + V I+ K Sbjct: 66 LLYCEPNGVEIQIEGKK 82 >gi|229529008|ref|ZP_04418398.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae 12129(1)] gi|229332782|gb|EEN98268.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae 12129(1)] gi|327484506|gb|AEA78913.1| Transcriptional regulator yidN, Cro/CI family [Vibrio cholerae LMA3894-4] Length = 181 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K +RK+ + A ++ + E G S +I + + E SF Sbjct: 6 FKSQIANQLKKLRKSRGLSLDTTAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 65 Query: 88 DWIYDGEVI 96 + + Sbjct: 66 SAFFANDPQ 74 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK +RK +G+S +L G+ + L E+G + P I KI + Sbjct: 5 MFKSQIANQLKKLRKSRGLSLDTTAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 64 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 65 FSAFFANDPQLLSSE 79 >gi|255655389|ref|ZP_05400798.1| putative phage regulatory protein [Clostridium difficile QCD-23m63] gi|296451377|ref|ZP_06893115.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296880273|ref|ZP_06904238.1| probable phage regulatory protein [Clostridium difficile NAP07] gi|296259793|gb|EFH06650.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296428716|gb|EFH14598.1| probable phage regulatory protein [Clostridium difficile NAP07] Length = 139 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI +RKA N Q E+ ++ FE + + + + +S DW+ Sbjct: 4 LGERIVYLRKAKNLKQYELEEMLGCD--NLSKFERNIRKPNYEILKSISEIFNVSVDWLL 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYA--IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 +G+ + + + + + P +K + + ++ + K+ GM L YE+ Sbjct: 62 NGDNLSHKSDLICDSSSNYPLNSINSNEIKLLNNFRKLNDYDKAKIEGMIELKLHEYEKD 121 Query: 150 RTIPEIK 156 + + + + Sbjct: 122 KNLKKTE 128 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ +RK K + Q E ++LG N LS +E+ P + + I ++ +DW+ G Sbjct: 6 ERIVYLRKAKNLKQYELEEMLGCDN--LSKFERNIRKPNYEILKSISEIFNVSVDWLLNG 63 Query: 176 DEVIVPKSI 184 D + + Sbjct: 64 DNLSHKSDL 72 >gi|196038875|ref|ZP_03106182.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|228926817|ref|ZP_04089885.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|301053321|ref|YP_003791532.1| transcriptional regulator [Bacillus anthracis CI] gi|196030020|gb|EDX68620.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|228832930|gb|EEM78499.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300375490|gb|ADK04394.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 403 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVID 97 + + + Sbjct: 63 EEDDDE 68 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEIVELIQKMERLIKNK 83 >gi|52143677|ref|YP_083152.1| transcriptional regulator [Bacillus cereus E33L] gi|51977146|gb|AAU18696.1| transcriptional regulator [Bacillus cereus E33L] Length = 403 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVID 97 + + + Sbjct: 63 EEDDDE 68 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEIVELIQKMERLIKNK 83 >gi|89097350|ref|ZP_01170240.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088173|gb|EAR67284.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 107 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 37/104 (35%), Gaps = 4/104 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G R+K +R+ + E+A A +S ++ E + SI++ + + D + Sbjct: 2 IGERVKRLRQERKMSLSELAEQAGVAKSYLSSLERNLQTNPSIQFLEKISAVLHVPVDTL 61 Query: 91 YDGEVIDRRYEDVT---NKKRLDPYAIGARLKSIRKDKGMSQIE 131 + + K+ +D + + + + Sbjct: 62 ILDQPNKEELDSEWMNIVKEAMDSGISKDQFREFLEFNKWRINQ 105 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K +R+++ MS E + G+ S LS+ E+ +T P I+ KI V +D Sbjct: 1 MIGERVKRLRQERKMSLSELAEQAGVAKSYLSSLERNLQTNPSIQFLEKISAVLHVPVDT 60 Query: 172 IYFG 175 + Sbjct: 61 LILD 64 >gi|332800291|ref|YP_004461790.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332698026|gb|AEE92483.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 103 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RI+ +R++ + +++AI A + +N ENG I + I+ Sbjct: 7 DIGKRIRQLRESLGLSNRQLAIKAGLSQPVMNRIENGNRKADIETLEKICYALGITLIDF 66 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + + E + K Sbjct: 67 FSIDEEEMSPEYLELLKN 84 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL-DWIYF 174 R++ +R+ G+S + G+ ++ E G +I+ KI L D+ Sbjct: 10 KRIRQLRESLGLSNRQLAIKAGLSQPVMNRIENGNRKADIETLEKICYALGITLIDFFSI 69 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 +E + P+ ++ K + K S + K N Sbjct: 70 DEEEMSPEYLELLKNAK--KLSTEQLKILN 97 >gi|325662674|ref|ZP_08151271.1| hypothetical protein HMPREF0490_02011 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086418|ref|ZP_08335498.1| hypothetical protein HMPREF0987_01801 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471013|gb|EGC74240.1| hypothetical protein HMPREF0490_02011 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406184|gb|EGG85707.1| hypothetical protein HMPREF0987_01801 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 65 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +LK R ++G+SQ++ ++ + T+ E G P +K +I + K LD + Sbjct: 1 MKNMKLKIARMEQGLSQVQLAEMTDVTRQTIGMIEAGDFNPSLKLCIRICKALGKTLDDL 60 Query: 173 YFGDE 177 ++ E Sbjct: 61 FWEVE 65 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 24/57 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R +Q ++A + + + E G + S++ + + + D ++ Sbjct: 5 KLKIARMEQGLSQVQLAEMTDVTRQTIGMIEAGDFNPSLKLCIRICKALGKTLDDLF 61 >gi|311031859|ref|ZP_07709949.1| transcriptional regulator SinR [Bacillus sp. m3-13] Length = 124 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 18/110 (16%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G R+K +RK + E++ A +S ++ E + S+++ + E D++ Sbjct: 2 LGERLKRLRKVKGYSLSELSELAGVSKSYLSYLERNIQTNPSLQFLNKIAVTLETDLDFL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 +GE + + + + + + + Q + G+ Sbjct: 62 LNGESDNDKPDVQVLDE---------------EWRRLVQRAIAE--GLSK 94 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 +G RLK +RK KG S E +L G+ S LS E+ +T P ++ KI + LD+ Sbjct: 1 MLGERLKRLRKVKGYSLSELSELAGVSKSYLSYLERNIQTNPSLQFLNKIAVTLETDLDF 60 Query: 172 IYFGDEVIVPKSIK 185 + G+ ++ Sbjct: 61 LLNGESDNDKPDVQ 74 >gi|307329866|ref|ZP_07609020.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884477|gb|EFN15509.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 140 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R++ + +++A A ++ E G+ S L IS + + Sbjct: 8 NLGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 11 EFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLY 68 >gi|167761064|ref|ZP_02433191.1| hypothetical protein CLOSCI_03462 [Clostridium scindens ATCC 35704] gi|167661298|gb|EDS05428.1| hypothetical protein CLOSCI_03462 [Clostridium scindens ATCC 35704] Length = 71 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R + + +Q+ +A + + + E G + S++ + + ++ D ++ Sbjct: 4 KKMKMARLSLDMSQEMLAAKVDVTRQTIGMIEAGKFNPSLKLCIAICKVLHVTLDDLFWE 63 Query: 94 EVI 96 E Sbjct: 64 EDE 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++K R MSQ + + T+ E G+ P +K I +V LD + Sbjct: 1 MKNKKMKMARLSLDMSQEMLAAKVDVTRQTIGMIEAGKFNPSLKLCIAICKVLHVTLDDL 60 Query: 173 YFGDEVIVPKS 183 ++ ++ S Sbjct: 61 FWEEDEYEENS 71 >gi|241203160|ref|YP_002974256.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857050|gb|ACS54717.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 469 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ IR A TQ MA S +NL E +++ L L + Y + + + Sbjct: 9 GPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVDLEEL 66 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + L + S L+ E+ + ++ K+ V + L+ + Sbjct: 12 VRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVDLEEL 66 >gi|153853196|ref|ZP_01994605.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814] gi|149753982|gb|EDM63913.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814] Length = 66 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK+ R+ N +Q E+A + ENG + S+ A + + ++ + ++ Sbjct: 5 NIKEFREQNKMSQTELAQLVGVRRETIGHLENGHYNPSLVLAAKIAKVFNVTIEDMF 61 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I +K R+ MSQ E +L+G+ T+ + E G P + A KI +V ++ + Sbjct: 1 MIITNIKEFREQNKMSQTELAQLVGVRRETIGHLENGHYNPSLVLAAKIAKVFNVTIEDM 60 Query: 173 Y 173 + Sbjct: 61 F 61 >gi|116250534|ref|YP_766372.1| HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255182|emb|CAK06256.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 469 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ IR A TQ MA S +NL E +++ L L + Y + + + Sbjct: 9 GPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVDLEEL 66 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + L + S L+ E+ + ++ K+ V + L+ + Sbjct: 12 VRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVDLEEL 66 >gi|58040192|ref|YP_192156.1| hypothetical protein GOX1761 [Gluconobacter oxydans 621H] gi|58002606|gb|AAW61500.1| Hypothetical protein GOX1761 [Gluconobacter oxydans 621H] Length = 203 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 12/113 (10%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI+ +R+ +Q+++A SAV +E G ++ L + + + Sbjct: 82 ELGRRIRLLREMAGLSQQQLADKVGISRSAVAFWETGRSGHVGKHLGSLAQVLGVEPEVL 141 Query: 91 YDGEVIDRRYEDVTNKK-----------RLDPYAIGARL-KSIRKDKGMSQIE 131 G +T + L + + +R G Q Sbjct: 142 LTGMAYKAIQATLTPDENTMLTLYRQLDPLIKLQAQKWIERRVRNKTGEEQDA 194 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ +R+ G+SQ + +G+ S ++ +E GR+ K + QV + Sbjct: 81 LELGRRIRLLREMAGLSQQQLADKVGISRSAVAFWETGRSGHVGKHLGSLAQVLGVEPEV 140 Query: 172 IYFG 175 + G Sbjct: 141 LLTG 144 >gi|295112179|emb|CBL28929.1| Predicted transcriptional regulators [Synergistetes bacterium SGP1] Length = 155 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K +R +Q ++A + + +ENG S R L + + ++ Sbjct: 2 KISDRVKTLRDLRGLSQGDLAQIIGVDVNTIWRWENGRSSP-ARSIQKLAQALDTTTAYL 60 Query: 91 YDGEVIDRRYED 102 +RY Sbjct: 61 LGETDNPKRYTS 72 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+K++R +G+SQ + +++G+ +T+ +E GR+ P + +K+ Q + Sbjct: 1 MKISDRVKTLRDLRGLSQGDLAQIIGVDVNTIWRWENGRSSP-ARSIQKLAQALDTTTAY 59 Query: 172 IYFGDEVIVPKSIKR 186 + G+ + R Sbjct: 60 LL-GETDNPKRYTSR 73 >gi|271967016|ref|YP_003341212.1| hypothetical protein Sros_5721 [Streptosporangium roseum DSM 43021] gi|270510191|gb|ACZ88469.1| hypothetical protein Sros_5721 [Streptosporangium roseum DSM 43021] Length = 431 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 1/94 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK R+ +Q E+A +S V+L E+G + L + E S ++ Sbjct: 8 VGQRIKTARRRRGISQAELAHP-ELSDSYVSLIESGKRTAPPAVLELLAEKLECSLSYLV 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 G ++R E G R R Sbjct: 67 SGVTAEQREELELGLVHARQALDGDRAAEARTRY 100 Score = 43.4 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K+ R+ +G+SQ E + +S +S E G+ + + + L ++ G Sbjct: 10 QRIKTARRRRGISQAELAHP-ELSDSYVSLIESGKRTAPPAVLELLAEKLECSLSYLVSG 68 >gi|302540026|ref|ZP_07292368.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302457644|gb|EFL20737.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 207 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P+ + + + R ++ R+A + EMA ++ ++ EN + S+ L Sbjct: 14 PDDKALERVIAVRAREYRQAAGLSVGEMAQRVGISKAMLSKIENAQTACSLTTLSRLARG 73 Query: 83 YEISFDWIYDG 93 ++ ++ G Sbjct: 74 LDVPVTALFRG 84 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 1/81 (1%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-DE 177 + R+ G+S E + +G+ + LS E +T + ++ + + ++ G D+ Sbjct: 28 REYRQAAGLSVGEMAQRVGISKAMLSKIENAQTACSLTTLSRLARGLDVPVTALFRGMDD 87 Query: 178 VIVPKSIKRAKGNQSSKKSKK 198 + G + ++ K Sbjct: 88 EREAVFVPAGHGARIVRRGTK 108 >gi|229194032|ref|ZP_04320926.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228589432|gb|EEK47357.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 184 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 +VG +I RK T K +A A+ S ++ E G+ + S++ + I ++ Sbjct: 5 NVGHKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNF 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + +K++ G + +E L+ + T S+ E Sbjct: 65 FLEDTNTEELVVRANQRKKITFPESGNVSYELLSPNLDGALELA-LMNLLPQTASSIE 121 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++ + RK G++ +L + S LS E+G T P ++ + I Sbjct: 1 MNDINVGHKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 L-FNFFLEDTNTEELVVRANQRKK 83 >gi|168183318|ref|ZP_02617982.1| cupin domain protein [Clostridium botulinum Bf] gi|237793956|ref|YP_002861508.1| cupin domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182673516|gb|EDT85477.1| cupin domain protein [Clostridium botulinum Bf] gi|229263990|gb|ACQ55023.1| cupin domain protein [Clostridium botulinum Ba4 str. 657] Length = 183 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N + ++A +N + ++ E G + +I + N ++ + + Sbjct: 7 IAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLL 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + D +N + Sbjct: 67 EQKEYDTCIIKKSNLEPQ 84 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK++R ++ +S + +L + LS E+G T P I KI K + Sbjct: 9 ENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLLEQ 68 Query: 176 DE 177 E Sbjct: 69 KE 70 >gi|49477327|ref|YP_035899.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118477214|ref|YP_894365.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|229183977|ref|ZP_04311192.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] gi|49328883|gb|AAT59529.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416439|gb|ABK84858.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|228599502|gb|EEK57107.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] Length = 403 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVID 97 + + + Sbjct: 63 EEDDDE 68 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEIVELIQKMERLIKNK 83 >gi|30261788|ref|NP_844165.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527021|ref|YP_018370.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184620|ref|YP_027872.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65319065|ref|ZP_00392024.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165869450|ref|ZP_02214109.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633384|ref|ZP_02391709.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167638745|ref|ZP_02397020.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686089|ref|ZP_02877311.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170706409|ref|ZP_02896869.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650447|ref|ZP_02933414.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190566266|ref|ZP_03019184.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227815444|ref|YP_002815453.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229604650|ref|YP_002866175.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254683285|ref|ZP_05147146.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723868|ref|ZP_05185654.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734638|ref|ZP_05192350.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741048|ref|ZP_05198736.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755290|ref|ZP_05207324.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759827|ref|ZP_05211851.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30256016|gb|AAP25651.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502169|gb|AAT30845.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178547|gb|AAT53923.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164714890|gb|EDR20408.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167513209|gb|EDR88580.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531422|gb|EDR94100.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128507|gb|EDS97374.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669786|gb|EDT20527.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083591|gb|EDT68651.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562401|gb|EDV16368.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227006595|gb|ACP16338.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229269058|gb|ACQ50695.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 403 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVID 97 + + + Sbjct: 63 EEDDDE 68 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEIVELIQKMERLIKNK 83 >gi|325830940|ref|ZP_08164293.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1] gi|325487102|gb|EGC89547.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1] Length = 77 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RIKD+R +Q+ A + + E G + SI + + + ++F + + Sbjct: 15 GLRIKDLRDERGLSQRGFAARIGMSPTYLADVERGARNVSIDNMKRIADGFGVTFHEMTE 74 Query: 93 G 93 G Sbjct: 75 G 75 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K +R ++G+SQ F +GM + L++ E+G I ++I + G E Sbjct: 18 IKDLRDERGLSQRGFAARIGMSPTYLADVERGARNVSIDNMKRIADGFGVTFHEMTEGME 77 >gi|323650445|gb|ADX97299.1| C.ClaIP [Caryophanon latum] Length = 101 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Query: 16 EYTLIITPEIR--QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 + +I+T EI+ ++ K G IK +R+ TQ + A S + E G + + Sbjct: 9 DNDVILTQEIKRIEFQKAFGKNIKRLRQQQELTQDRLGYLAELDRSYIGGIERGERNVCL 68 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 + + ++S + +++ + E TN Sbjct: 69 SNIKRIADALKVSVNDLFNFKEATTYEELCTND 101 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + + K+ A G +K +R+ + ++Q G L + S + E+G Sbjct: 7 KNDNDVILTQEIKRIEFQKAFGKNIKRLRQQQELTQDRLGYLAELDRSYIGGIERGERNV 66 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSI 184 + ++I K ++ ++ E + + Sbjct: 67 CLSNIKRIADALKVSVNDLFNFKEATTYEEL 97 >gi|322375562|ref|ZP_08050074.1| putative transcriptional repressor [Streptococcus sp. C300] gi|321279270|gb|EFX56311.1| putative transcriptional repressor [Streptococcus sp. C300] Length = 69 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVELDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R + ++Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MAKNLKLKLARVELDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 >gi|310640139|ref|YP_003944897.1| hth-type transcriptional regulator [Paenibacillus polymyxa SC2] gi|309245089|gb|ADO54656.1| Putative HTH-type transcriptional regulator [Paenibacillus polymyxa SC2] Length = 184 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 28/78 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R + ++A ++ + E G + SI + N +ISF + Sbjct: 9 LSKNLKHLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISFTALI 68 Query: 92 DGEVIDRRYEDVTNKKRL 109 D + + L Sbjct: 69 SEPPADAVVVPKSKVQVL 86 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +R ++ +S + L G+ + L E+G + P I KI K + Sbjct: 11 KNLKHLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISFTALISE 70 Query: 176 ---DEVIVPKS 183 D V+VPKS Sbjct: 71 PPADAVVVPKS 81 >gi|291008215|ref|ZP_06566188.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 201 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE 65 F++++ ++ + + T E + + ++ R + E+A A +S ++ E Sbjct: 2 FVKSNTRTGETNDAMSTTESTPL-EIISAALRRERDRVGLSLTELAKRAGIAKSTLSQLE 60 Query: 66 NGMCSTSIRYALYLRNEYEISFDWIYD 92 +G + S+ L + F + D Sbjct: 61 SGAGNPSVETLWALAVALGVPFSRLVD 87 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 21/56 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R G+S E K G+ STLS E G P ++ + + Sbjct: 31 LRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLWALAVALGVPFSRLV 86 >gi|282162049|gb|ADA79913.1| hypothetical protein CU5_35 [Lactobacillus phage phiPYB5] Length = 64 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LK++R +KGM+Q E K +G+ T NYE G+T P++ KI++ + I F Sbjct: 5 LKALRANKGMTQEEAAKAIGVSQYTWQNYEHGKTFPDVPTIEKIEKKFNVTYNDIIF 61 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K +R TQ+E A + +E+G + + ++ ++++ I Sbjct: 5 LKALRANKGMTQEEAAKAIGVSQYTWQNYEHGKTFPDVPTIEKIEKKFNVTYNDIIF 61 >gi|295690474|ref|YP_003594167.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432377|gb|ADG11549.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 135 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 27/84 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ RK +Q ++A + +E G S + + Y Sbjct: 17 VGARLRIRRKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLLQAPVSYFY 76 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIG 115 +G D +R+ + Sbjct: 77 EGLEDTDGGLDDGFAQRMTEFVST 100 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GARL+ RK G+SQ + LG+ + YE+G ++ + + + Sbjct: 15 LYVGARLRIRRKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLLQAPVSY 74 Query: 172 IYFGDEVI 179 Y G E Sbjct: 75 FYEGLEDT 82 >gi|255024118|ref|ZP_05296104.1| transcription regulator, putative [Listeria monocytogenes FSL J1-208] Length = 110 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYEDVT-NKKRLDPYAIGARLKSI 121 +D E +++ + G R+K + Sbjct: 62 FDEEEHNQKVIYGELEHTFFEDEEKGYRIKWL 93 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDE 177 + +E Sbjct: 61 FFDEEE 66 >gi|269129117|ref|YP_003302487.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268314075|gb|ACZ00450.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 487 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R++++R +Q ++A + +S ++L E+G + + L + +++ Sbjct: 6 NVGERVRNLRLTRRMSQAQLAGH-DLSDSYISLIESGKRTPTPAVLRLLAERLGCTAEYL 64 Query: 91 YDG 93 +G Sbjct: 65 AEG 67 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R + MSQ + + +S +S E G+ P R + + +++ G Sbjct: 9 ERVRNLRLTRRMSQAQLAGH-DLSDSYISLIESGKRTPTPAVLRLLAERLGCTAEYLAEG 67 Query: 176 DEVIVPKSIK 185 E ++ Sbjct: 68 IEPEQRAHLE 77 >gi|187780191|ref|ZP_02996664.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC 15579] gi|187773816|gb|EDU37618.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC 15579] Length = 183 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 9/87 (10%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N + ++A + + ++ E G + +I + ++ + + Sbjct: 7 IAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSLL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + D + + R+ Sbjct: 67 EQKEHDTYVIKKRDIEAQFTEEGHYRV 93 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK++R ++ +S + +L G+ LS E+G T P I KI + K + Sbjct: 9 ENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSLLEQ 68 Query: 176 DE 177 E Sbjct: 69 KE 70 >gi|160946894|ref|ZP_02094097.1| hypothetical protein PEPMIC_00855 [Parvimonas micra ATCC 33270] gi|158447278|gb|EDP24273.1| hypothetical protein PEPMIC_00855 [Parvimonas micra ATCC 33270] Length = 63 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ IRK TQ+E+A VN ENG + SI A + + + + I+ Sbjct: 3 NKLEQIRKDRGITQEELANILEVSRQTVNSLENGRYNPSIVLAFKIAKFFGLQIEEIFIY 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +L+ IRKD+G++Q E +L + T+++ E GR P I A KI + ++ I+ Sbjct: 1 MKNKLEQIRKDRGITQEELANILEVSRQTVNSLENGRYNPSIVLAFKIAKFFGLQIEEIF 60 Query: 174 FGD 176 + Sbjct: 61 IYE 63 >gi|37528124|ref|NP_931469.1| hypothetical protein plu4293 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787561|emb|CAE16665.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 78 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ R+++ +Q+ A + ++ E G+ + ++ + + +I ++ Sbjct: 11 FGQRVRYFRQSSGMSQEAFADKCGIDRTYISGIERGVRNPTLEIINIIASGLQIELTDLF 70 Query: 92 D 92 D Sbjct: 71 D 71 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G R++ R+ GMSQ F G+ + +S E+G P ++ I + L Sbjct: 9 FLFGQRVRYFRQSSGMSQEAFADKCGIDRTYISGIERGVRNPTLEIINIIASGLQIELTD 68 Query: 172 IY 173 ++ Sbjct: 69 LF 70 >gi|21910272|ref|NP_664540.1| hypothetical protein SpyM3_0736 [Streptococcus pyogenes MGAS315] gi|28876201|ref|NP_795428.1| hypothetical protein SpyM3_0736 [Streptococcus pyogenes phage 315.1] gi|28895849|ref|NP_802199.1| repressor C1 [Streptococcus pyogenes SSI-1] gi|21904467|gb|AAM79343.1| conserved hypothetical protein - phage-associated [Streptococcus pyogenes phage 315.1] gi|28811098|dbj|BAC64032.1| putative repressor C1 [Streptococcus pyogenes SSI-1] Length = 69 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + ++ VG +I+ RK Q ++A + + + + ENG +++ + LR + +S Sbjct: 2 ELYEFVGEQIRHQRKLAKLNQSQLAELLDTNQQTIGMMENGKRRATLQDLVKLRKIFNVS 61 Query: 87 FDWIYDGE 94 D + Sbjct: 62 VDDFLPKD 69 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +++ RK ++Q + +LL T+ E G+ ++ K++++ +D Sbjct: 4 YEFVGEQIRHQRKLAKLNQSQLAELLDTNQQTIGMMENGKRRATLQDLVKLRKIFNVSVD 63 Query: 171 WIYFGD 176 D Sbjct: 64 DFLPKD 69 >gi|83859577|ref|ZP_00953097.1| predicted transcription regulator, containing DNA-binding HTHdomain [Oceanicaulis alexandrii HTCC2633] gi|83851936|gb|EAP89790.1| predicted transcription regulator, containing DNA-binding HTHdomain [Oceanicaulis alexandrii HTCC2633] Length = 75 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 31 DVGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + RI+++R TQ E+A V E G S S+ A + ++ Sbjct: 6 QIKNRIRELRFHAGEMTQAELARRIGVTRQTVLAIEQGKYSPSLEVAFQIAEVFKTPLTD 65 Query: 90 IYD 92 +++ Sbjct: 66 VFE 68 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++ +R G M+Q E + +G+ T+ EQG+ P ++ A +I +V K L + Sbjct: 7 IKNRIRELRFHAGEMTQAELARRIGVTRQTVLAIEQGKYSPSLEVAFQIAEVFKTPLTDV 66 Query: 173 Y 173 + Sbjct: 67 F 67 >gi|303234360|ref|ZP_07320999.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302494476|gb|EFL54243.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 143 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++K +R N TQKE+AI + ++A+ +E G S S + + + + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALIN 63 Query: 93 GEVIDRRYED 102 E Sbjct: 64 HEPNSIFEIM 73 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + ++Q E G+ ++ + NYE G P + +KI + + Sbjct: 1 MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISA 60 Query: 172 IYFGD 176 + + Sbjct: 61 LINHE 65 >gi|251782567|ref|YP_002996869.1| putative phage DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391196|dbj|BAH81655.1| putative phage DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 116 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 2/84 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++ K+ T + +++ +N S + + + +S D++ Sbjct: 6 ERIKELAKSRGITLGSLEEKLGLSRNSIYTIKN--KKPSAERLQLIADYFNVSTDYLLGR 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR 117 T +K +D I A+ Sbjct: 64 TDNPAIANGTTGQKTIDFKEIAAQ 87 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ R+K + K +G++ + LG+ +++ + + P + + I D Sbjct: 1 MFSTFERIKELAKSRGITLGSLEEKLGLSRNSIYTIKNKK--PSAERLQLIADYFNVSTD 58 Query: 171 WIY 173 ++ Sbjct: 59 YLL 61 >gi|229100209|ref|ZP_04231109.1| transcriptional regulator [Bacillus cereus Rock3-29] gi|228683251|gb|EEL37229.1| transcriptional regulator [Bacillus cereus Rock3-29] Length = 116 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+IR + +Q+ A + V+L E+G S + N IS D++ Sbjct: 6 IGIRVKEIRNSLAMSQQSFADAIEVSKGMVSLIESGKKKPSRDTVSKISNLGNISADYVM 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E +++ + + + + ++++ + Sbjct: 66 GLSNYKNLDESQSSEVKTELHDMISKIEKL 95 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG R+K IR MSQ F + + +S E G+ P KI + Sbjct: 1 MIENIIGIRVKEIRNSLAMSQQSFADAIEVSKGMVSLIESGKKKPSRDTVSKISNLGNIS 60 Query: 169 LDWIY 173 D++ Sbjct: 61 ADYVM 65 >gi|291296678|ref|YP_003508076.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290471637|gb|ADD29056.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 130 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++++R K+++ + ++ E G + S+ L Y +S + + Sbjct: 3 LAERLRELRTQQGWRLKDLSEKSGLSVPYLSDLERGRTNPSLDTLQTLATSYNLSVNDLL 62 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RL+ +R +G + + G+ LS+ E+GRT P + + + ++ Sbjct: 1 MTLAERLRELRTQQGWRLKDLSEKSGLSVPYLSDLERGRTNPSLDTLQTLATSYNLSVND 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|284989965|ref|YP_003408519.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063210|gb|ADB74148.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 77 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A + ++ RK++ ++Q E + +G+ T+ EQG P + A +I +V ++ Sbjct: 9 AAASPVRERRKERRITQAELAEQVGVSRQTIIAVEQGDYAPSVYLALRIARVLGGTVEEF 68 Query: 173 YFGD 176 + + Sbjct: 69 FTEE 72 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +++ RK TQ E+A + E G + S+ AL + + + + E Sbjct: 14 VRERRKERRITQAELAEQVGVSRQTIIAVEQGDYAPSVYLALRIARVLGGTVEEFFTEET 73 Query: 96 IDRR 99 D R Sbjct: 74 GDVR 77 >gi|239814987|ref|YP_002943897.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801564|gb|ACS18631.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R A + E+A + S ++ E G+ S S+ L + + Sbjct: 9 IGAQVRALRMAAEVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 68 Query: 92 DGEVIDRRY 100 + + Sbjct: 69 SDQARRTDF 77 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + L IGA+++++R +S E K G+ S LS E+G P ++ ++ Q Sbjct: 1 MRSLSAARIGAQVRALRMAAEVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGL 60 Query: 166 KKHLDWIYFG 175 + Sbjct: 61 HVPTSRFFSD 70 >gi|170745337|ref|YP_001766794.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658938|gb|ACB27992.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 138 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 8/94 (8%), Positives = 30/94 (31%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +D+G RI+ R+ ++ + +E G+ + + ++ Sbjct: 25 LDRDIGERIRKHRQDRRLGYGQLGGMLGFSGQQMRKYERGLSRIPASTLYVIAHILDVPV 84 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +++ E ++ + ++ + Sbjct: 85 NYLLPDEKRMLNPIQQRIQEITTKLSYIEDVRFL 118 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 35/84 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R+D+ + + G +LG + YE+G + I + ++++ Sbjct: 31 ERIRKHRQDRRLGYGQLGGMLGFSGQQMRKYERGLSRIPASTLYVIAHILDVPVNYLLPD 90 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 ++ ++ +R + + +D Sbjct: 91 EKRMLNPIQQRIQEITTKLSYIED 114 >gi|169830949|ref|YP_001716931.1| XRE family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169637793|gb|ACA59299.1| transcriptional regulator, XRE family [Candidatus Desulforudis audaxviator MP104C] Length = 83 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+S+R G++Q E + +G+ + +N E+G P + A +I +V +H++ ++ DE Sbjct: 8 LRSVRLRAGLTQAELARRVGISRTAYTNIEKGHKHPSLVTALRIARVLNEHVEDLFA-DE 66 Query: 178 VIVPKSIKRAKGNQSS 193 + +K G +SS Sbjct: 67 FPDGQLVKVGTGVRSS 82 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R TQ E+A +A E G S+ AL + + ++ E Sbjct: 8 LRSVRLRAGLTQAELARRVGISRTAYTNIEKGHKHPSLVTALRIARVLNEHVEDLFADEF 67 Query: 96 ID 97 D Sbjct: 68 PD 69 >gi|167580827|ref|ZP_02373701.1| DNA-binding protein [Burkholderia thailandensis TXDOH] Length = 278 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 25/63 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E S + L N +S ++ Sbjct: 7 IARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLASLF 66 Query: 92 DGE 94 + + Sbjct: 67 EDD 69 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 34/90 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLASLFED 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D P S + S ++S +P Sbjct: 69 DRAASPLSRAAEQPVWKDPASGYVRRSLSP 98 >gi|149203444|ref|ZP_01880414.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149143277|gb|EDM31316.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 465 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 28/90 (31%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++ R+ TQK+ A +N EN S L L E+ + Sbjct: 9 GAKLRETRQRLGLTQKDFAGKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGFDVTELST 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + L +R Sbjct: 69 GDAERMVSDMREALADPVFGDDPPPLADLR 98 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + GA+L+ R+ G++Q +F LG+ L+ E + Q Sbjct: 1 MAIQKLYAGAKLRETRQRLGLTQKDFAGKLGVSLPYLNQMENNNRPVSTTVVLALAQEFG 60 Query: 167 KHLDWIYFGDEVIVPKSIKRA 187 + + GD + ++ A Sbjct: 61 FDVTELSTGDAERMVSDMREA 81 >gi|322390117|ref|ZP_08063652.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321143244|gb|EFX38687.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 77 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R ++ TQ ++A + L E G + ++ L + + + D ++ Sbjct: 19 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLDKTLDQLF 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 Y ++ + A +LK R + M+Q + +G+ T+ E G+ P + Sbjct: 2 YNKAIKTRKENHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCL 61 Query: 160 KIKQVTKKHLDWIYFG 175 I + K LD +++ Sbjct: 62 AICKTLDKTLDQLFWE 77 >gi|310658782|ref|YP_003936503.1| Xre family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825560|emb|CBH21598.1| Transcriptional regulator, XRE family [Clostridium sticklandii] Length = 179 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 36/90 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R NN TQ+E+A+ + + ++ E + S SI + + + Sbjct: 3 IGEKIKRLRILNNLTQEELALRCDLTKGFISKLERDLTSPSIATLVDILEALGTDLKDFF 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + +++ + Sbjct: 63 NESSNNKIVFGKEDIYDAYYEHNKSKIHWL 92 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R ++Q E + +S E+ T P I I + L Sbjct: 1 MVIGEKIKRLRILNNLTQEELALRCDLTKGFISKLERDLTSPSIATLVDILEALGTDLKD 60 Query: 172 IY---------FGDEVIVPKSIKRAKG 189 + FG E I + K Sbjct: 61 FFNESSNNKIVFGKEDIYDAYYEHNKS 87 >gi|291530671|emb|CBK96256.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 120 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 34/90 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R TQ E+A ++ + ++ E S S+ + + NE +S D + Sbjct: 8 LGQRIRAFRTKKGITQMELAERIDRSAAYMSYVETAYKSCSLDTLVMVANELNVSTDDLL 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + ++ + Sbjct: 68 IDSLTNTIKASNHEFTAILSDCSDYEMRVL 97 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 27/69 (39%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +++ +G R+++ R KG++Q+E + + + +S E + + Sbjct: 1 MQINYILLGQRIRAFRTKKGITQMELAERIDRSAAYMSYVETAYKSCSLDTLVMVANELN 60 Query: 167 KHLDWIYFG 175 D + Sbjct: 61 VSTDDLLID 69 >gi|228933066|ref|ZP_04095929.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826667|gb|EEM72438.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 403 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVID 97 + + + Sbjct: 63 EEDDDE 68 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSK 194 D+ + + I++ + +K Sbjct: 65 DDDEIVELIQKMERLIKNK 83 >gi|300768755|ref|ZP_07078651.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181584|ref|YP_003925712.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|300493712|gb|EFK28884.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047075|gb|ADN99618.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 303 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 11/142 (7%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G I IR + TQ+E+ G S + FE+G + + IS D Sbjct: 1 MTNIGETIHQIRLSKGLTQQEVYSGI-ISRSFASRFESGANDIGASKLFAILDNLAISAD 59 Query: 89 WI-YDGEVIDRRYEDVT------NKKRLDPYAIGARLKSIRK-DKGMSQ--IEFGKLLGM 138 + + + D + L+ A+ ++ R Q + +L + Sbjct: 60 ELRFIHQNYQPSAYDQALWTIRHAYETLNFPALATWIREHRHSPHAYEQLIASYASILML 119 Query: 139 PNSTLSNYEQGRTIPEIKPARK 160 S T P + Sbjct: 120 SYDHRSVGVTTTTQPAFDHLLQ 141 >gi|227500718|ref|ZP_03930767.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227217176|gb|EEI82525.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 143 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++K +R N TQKE+AI + ++A+ +E G S S + + + D Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALID 63 Query: 93 GEVIDRRYED 102 E Sbjct: 64 HEPNSIFEIM 73 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + ++Q E G+ ++ + NYE G P + +KI + + Sbjct: 1 MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISA 60 Query: 172 IY 173 + Sbjct: 61 LI 62 >gi|191637929|ref|YP_001987095.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|190712231|emb|CAQ66237.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|327381998|gb|AEA53474.1| Transcriptional regulator [Lactobacillus casei LC2W] gi|327385156|gb|AEA56630.1| Transcriptional regulator [Lactobacillus casei BD-II] Length = 62 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I +R TQ+E+A N +N EN ++ A L E + D ++ Sbjct: 3 NNIYALRTHQQLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAERLETTVDQLFQH 62 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + ++R + ++Q E + + T++ E + P + A + + + +D ++ Sbjct: 1 MENNIYALRTHQQLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAERLETTVDQLF 60 >gi|209547982|ref|YP_002279899.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533738|gb|ACI53673.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 469 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ IR A TQ MA S +NL E +++ L L Y + + + Sbjct: 9 GPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLATVYRVDLEEL 66 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ IR ++Q + L + S L+ E+ + ++ K+ V + L+ + Sbjct: 12 LRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLATVYRVDLEEL 66 >gi|148560287|ref|YP_001259882.1| hypothetical protein BOV_1998 [Brucella ovis ATCC 25840] gi|148371544|gb|ABQ61523.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 142 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G R++++R+ TQKEMA + ++ E+G + + + I +D Sbjct: 4 FGKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE 62 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHL 169 G RL+ +R+++G++Q E + L + + LS E GR P ++I Sbjct: 1 MTPFGKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIW 60 Query: 170 DW 171 D Sbjct: 61 DE 62 >gi|114769447|ref|ZP_01447073.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] gi|114550364|gb|EAU53245.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] Length = 206 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 33/90 (36%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I P + +G +K R+ + T ++A ++ ENG S S+ L Sbjct: 10 IREPREKVLELAIGREVKSHRRQRSMTVADLAASTGLSIGMLSKIENGNTSASLNTLQTL 69 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + I ++ G R E + + + Sbjct: 70 ADALMIPITSLFRGYESSRTAEHTKSGEGV 99 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 1/112 (0%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 ++ + ++++ AIG +KS R+ + M+ + G+ LS E G T Sbjct: 2 KLDQNPHRIREPREKVLELAIGREVKSHRRQRSMTVADLAASTGLSIGMLSKIENGNTSA 61 Query: 154 EIKPARKIKQVTKKHLDWIYFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + + + ++ G + + K +G + + + N Sbjct: 62 SLNTLQTLADALMIPITSLFRGYESSRTAEHTKSGEGVELERAGTRAGHQYN 113 >gi|83855136|ref|ZP_00948666.1| DNA binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83842979|gb|EAP82146.1| DNA binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 188 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 2/103 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + R+K R A + +A + S V+ E G S +I L Sbjct: 1 MTDNPDAILTQLPARLKAARTAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLT 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKK--RLDPYAIGARLKSI 121 ++ F + D + E + + ++ G R++ + Sbjct: 61 RALQVDFAGLLDSAPTPAQIEVLRAAEVPTINNLGSGCRIRIL 103 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ARLK+ R +G+S KL G+ S +S E+G + P I + + + + Sbjct: 13 PARLKAARTAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL- 71 Query: 175 GDEVIVPKSIKRAKGNQS 192 D P I+ + + Sbjct: 72 -DSAPTPAQIEVLRAAEV 88 >gi|226946801|ref|YP_002801874.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ] gi|226721728|gb|ACO80899.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK 49 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDWIYF 174 L+SIRK KG+SQ E K G+ NST+S E+ P I +K V L + Sbjct: 7 LQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK---VLGGIPMSLMEFFS 63 Query: 175 GD---EVIVPKSIKRAKGNQSSK 194 D E P + A+ + S+ Sbjct: 64 LDLEAEASAPVVYRAAEQAELSR 86 >gi|313906487|ref|ZP_07839821.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313468677|gb|EFR64045.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 101 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 4 NPFLETSLKSLQ---EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 FL+ +L ++Q + + + ++++ + ++R N TQKE+A+ ++ Sbjct: 5 QKFLDENLANVQINDDEAVTDNSKDYDIYREIREMVIELRHDNQMTQKELAVKCGITQAN 64 Query: 61 VNLFENGMCSTSIRYALYLRNEYE 84 ++ ENG +I + + Sbjct: 65 ISNLENGTTRPTIESLKKIADALG 88 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPY-AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 D I+ N K D Y I + +R D M+Q E G+ + +SN Sbjct: 8 LDENLANVQINDDEAVTDNSKDYDIYREIREMVIELRHDNQMTQKELAVKCGITQANISN 67 Query: 146 YEQGRTIPEIKPARKIKQVTKKHL 169 E G T P I+ +KI L Sbjct: 68 LENGTTRPTIESLKKIADALGMRL 91 >gi|296159598|ref|ZP_06842421.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295890042|gb|EFG69837.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 212 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R+A + T + + S ++ ENG+ S + + +I + Sbjct: 15 DLGRRVRAARQAQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVLGLKIEIGEL 74 Query: 91 Y 91 + Sbjct: 75 F 75 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ R+ + ++ +L G+ STLS E G P +KI K + ++ Sbjct: 18 RRVRAARQAQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVLGLKIEIGELF 75 >gi|260430343|ref|ZP_05784316.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260418372|gb|EEX11629.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 303 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + ++G R++ R + + +E+A +AV FE G I + L +S Sbjct: 5 YDEIGQRLRAFRLGSGMSAEEVANRIGISRTAVYRFEKGEV-VKIETLIGLAELLNVSLP 63 Query: 89 WIYDGEVI 96 + E+ Sbjct: 64 TLLGVEIE 71 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 L IG RL++ R GMS E +G+ + + +E+G + +I+ + ++ Sbjct: 1 MTLRYDEIGQRLRAFRLGSGMSAEEVANRIGISRTAVYRFEKGEVV-KIETLIGLAELLN 59 Query: 167 KHLDWIYFGDEVIVPKSIK 185 L + + + ++ Sbjct: 60 VSLPTLLGVEIEYISSAVT 78 >gi|259416694|ref|ZP_05740614.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259348133|gb|EEW59910.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 124 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 22/134 (16%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E G S + + +++ + + Sbjct: 9 VGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDALDVNISFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +G + + + L + S + E R Sbjct: 69 EGLQDETAKVVPEKARVPADLMGDK-----------------EALDLVRSYYAIPENQRR 111 Query: 152 IPEIKPARKIKQVT 165 ++ +V Sbjct: 112 R-----LFELARVL 120 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++ R GM+Q + + +G+ + YE G I ++ + Sbjct: 7 IHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDALDVNISF 66 Query: 172 IYFG-DEVIVPKSIKRAK 188 + G + ++A+ Sbjct: 67 FFEGLQDETAKVVPEKAR 84 >gi|253681413|ref|ZP_04862210.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253561125|gb|EES90577.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 179 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 34/90 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K +R TQ ++A + ++ E + S SI + + + Sbjct: 2 KIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKDF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 ++ + ++ + + + +++ Sbjct: 62 FNNDEEEKIVFSKEDIFESEDNELNYKIQW 91 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK +R +KG++Q++ + +S E+ T P I I + +L Sbjct: 1 MKIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKD 60 Query: 172 IYFGDE----VIVPKSIKRAKGNQSSKK 195 + DE V + I ++ N+ + K Sbjct: 61 FFNNDEEEKIVFSKEDIFESEDNELNYK 88 >gi|283796253|ref|ZP_06345406.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291076190|gb|EFE13554.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 270 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+ ++RK +E++ +SA+ +E+ + + L + YE+S D++ Sbjct: 7 IQERLWELRKDKGLNLEELSQKTGISKSALASYESDDNKEINHGSLIALADFYEVSIDYL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + ++ L A+ LKS R + + Sbjct: 67 FCRTENREQINTPLSELHLTDEAV-ELLKSGRINNRLLCE 105 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWIYFGDE 177 +RKDKG++ E + G+ S L++YE + + +D+++ E Sbjct: 13 ELRKDKGLNLEELSQKTGISKSALASYESDDNKEINHGSLIALADFYEVSIDYLFCRTE 71 >gi|209517814|ref|ZP_03266649.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209501760|gb|EEA01781.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 211 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R+A + T + + S ++ ENG+ S + + +I + Sbjct: 15 DLGRRVRAARQAQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVLGLKIEIGEL 74 Query: 91 Y 91 + Sbjct: 75 F 75 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ R+ + ++ +L G+ STLS E G P +KI K + ++ Sbjct: 18 RRVRAARQAQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVLGLKIEIGELF 75 >gi|169828385|ref|YP_001698543.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992873|gb|ACA40413.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 194 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 33/89 (37%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 ++ E + VG +++IRK + +E+A +N + + E G + ++ + Sbjct: 10 LLQEEHMDLFSQVGMNLREIRKNKRMSLEELASVSNVSKLTLGKIERGETNPTVNILWKI 69 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKR 108 I + E + + + Sbjct: 70 CRGLHIPLISLLSFEENVEVHRFGSEYQF 98 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 105 NKKRLDPYA-IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 ++ +D ++ +G L+ IRK+K MS E + + TL E+G T P + KI + Sbjct: 12 QEEHMDLFSQVGMNLREIRKNKRMSLEELASVSNVSKLTLGKIERGETNPTVNILWKICR 71 Query: 164 VTKKHLDWIYFGDEVIV 180 L + +E + Sbjct: 72 GLHIPLISLLSFEENVE 88 >gi|91777368|ref|YP_552576.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91690028|gb|ABE33226.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 276 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R+A + T + + S ++ ENG+ S + + +I + Sbjct: 79 DLGRRVRAARQAQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVLGLKIEIGEL 138 Query: 91 Y 91 + Sbjct: 139 F 139 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ R+ + ++ +L G+ STLS E G P +KI K + ++ Sbjct: 82 RRVRAARQAQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVLGLKIEIGELF 139 >gi|253723068|pdb|1PRA|A Chain A, Determination Of The Nuclear Magnetic Resonance Solution Structure Of The Dna-Binding Domain (Residues 1 To 69) Of The 434 Repressor And Comparison With The X-Ray Crystal Structure Length = 69 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+K R Q E+A + ++ ENG R+ L + +S DW+ Sbjct: 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 60 Query: 92 DGEVIDR 98 +G Sbjct: 61 NGTSDSN 67 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+KS R G++Q E + +G ++ E G+T + ++ +DW+ G Sbjct: 4 SRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLLNG 62 >gi|89896019|ref|YP_519506.1| hypothetical protein DSY3273 [Desulfitobacterium hafniense Y51] gi|219670447|ref|YP_002460882.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335467|dbj|BAE85062.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540707|gb|ACL22446.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 123 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 6/111 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 ++G +++ IRK + E++ + S ++ E+G STSI L +S Sbjct: 3 ELGKQLRKIRKDKKLSAAELSQISGVARSLISQLESGKRQSTSIDTVYRLAKALNVSVAS 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 + E + + LK + ++ + G+ Sbjct: 63 LLIEEPGTPPAIA----YKQNDKKSPLYLKE-HYSAYLPTLQKAEEAGLTP 108 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHL 169 +G +L+ IRKDK +S E ++ G+ S +S E R I ++ + + Sbjct: 1 MLELGKQLRKIRKDKKLSAAELSQISGVARSLISQLESGKRQSTSIDTVYRLAKALNVSV 60 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + + P + +S K+ + P Sbjct: 61 ASLLIEEPGTPPAIAYKQNDKKSPLYLKEHYSAYLP 96 >gi|320534197|ref|ZP_08034723.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133592|gb|EFW26014.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 74 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V RI +R +++E+A V E G + S+ AL + ++++ + ++ Sbjct: 6 VHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFDVAVESVF 65 Query: 92 DGEVIDR 98 E R Sbjct: 66 SLEEFPR 72 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 33/69 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + R+ +R D+ +S+ E + LG+ T+ E+G P + A +I + Sbjct: 1 MSDDVVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFDVA 60 Query: 169 LDWIYFGDE 177 ++ ++ +E Sbjct: 61 VESVFSLEE 69 >gi|224542577|ref|ZP_03683116.1| hypothetical protein CATMIT_01761 [Catenibacterium mitsuokai DSM 15897] gi|224524502|gb|EEF93607.1| hypothetical protein CATMIT_01761 [Catenibacterium mitsuokai DSM 15897] Length = 119 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 3/108 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWIYD 92 R++ R +Q+E+A SAV +E G S+ + + + ++ +W+ Sbjct: 3 DRMRRARLHAKLSQQELATKIGVQRSAVAQWEKTGGNLPSMNHLIDIALATGVTLEWLGT 62 Query: 93 GEVIDRRYEDVTNK--KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 G + E+ + LD + ++ + + L+G+ Sbjct: 63 GRGPIKADEETWTPAVESLDYAQDETEYQCLQDLRRLPHQLRENLVGI 110 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 7/89 (7%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLDWI 172 + R++ R +SQ E +G+ S ++ +E+ P + I T L+W+ Sbjct: 1 MEDRMRRARLHAKLSQQELATKIGVQRSAVAQWEKTGGNLPSMNHLIDIALATGVTLEWL 60 Query: 173 YFG------DEVIVPKSIKRAKGNQSSKK 195 G DE +++ Q + Sbjct: 61 GTGRGPIKADEETWTPAVESLDYAQDETE 89 >gi|254486796|ref|ZP_05100001.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] gi|214043665|gb|EEB84303.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] Length = 132 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 3/118 (2%) Query: 21 ITPEIRQYWKDV---GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 + Y DV G R+ R+ TQ +A ++ + +E+ + Sbjct: 1 MAENEDWYGPDVATFGDRVAAAREHAQMTQAALAKRLGVKQATLRAWEDDLSEPRANRLS 60 Query: 78 YLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 L +S W+ +GE D + L+ +R D + G+L Sbjct: 61 MLAGILGVSMMWLINGEGEGLDAPDDGQSSSETAMDVLTELRDLRADMLKRAEQLGRL 118 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G R+ + R+ M+Q K LG+ +TL +E + P + + + Sbjct: 11 DVATFGDRVAAAREHAQMTQAALAKRLGVKQATLRAWEDDLSEPRANRLSMLAGILGVSM 70 Query: 170 DWIYFGD 176 W+ G+ Sbjct: 71 MWLINGE 77 >gi|167839985|ref|ZP_02466669.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 95 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G I+ +R+A +Q+++A A S V E G SI L + + Sbjct: 6 QRFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIAR 65 Query: 90 IYD 92 + Sbjct: 66 LLT 68 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 GA ++ +R+ + SQ + + G+ S + E+G I I K+ + + + Sbjct: 8 FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 Query: 174 F 174 Sbjct: 68 T 68 >gi|163869151|ref|YP_001610391.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018838|emb|CAK02396.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 35/101 (34%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ R+ +Q + + +E G+ S + + + +S + Sbjct: 12 VGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVSIS-FF 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++I ++ + + + LK R + Q Sbjct: 71 YADIITKQQPPHHHDEVISNTEEYLLLKRFRTLTSIKQRAI 111 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + ++ +G +++ R+ MSQ G LG+ + YE+G +I Sbjct: 1 MQSQNLNIDLFVGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQIS 60 Query: 163 QVTKKHLDWIY 173 + + + Y Sbjct: 61 DILNVSISFFY 71 >gi|110804036|ref|YP_699966.1| Helix-turn-helix domain protein [Clostridium phage phiSM101] gi|110684537|gb|ABG87904.1| Helix-turn-helix domain protein [Clostridium phage phiSM101] Length = 120 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK+ TQ E A N S E G + + R + + ++ W+ G Sbjct: 3 NRVKELRKSLGLTQNEFADKINMSRSNFGSIETGRVNLTDRVINDICKAFSVNKTWLTSG 62 Query: 94 EVIDRRYEDVTNK 106 E D + Sbjct: 63 EGEMYDIIDSDEQ 75 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +RK G++Q EF + M S + E GR + I + + W+ Sbjct: 1 MNNRVKELRKSLGLTQNEFADKINMSRSNFGSIETGRVNLTDRVINDICKAFSVNKTWLT 60 Query: 174 FGDEVI 179 G+ + Sbjct: 61 SGEGEM 66 >gi|70725312|ref|YP_252226.1| hypothetical protein SH0311 [Staphylococcus haemolyticus JCSC1435] gi|68446036|dbj|BAE03620.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 67 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G +Q + K G+ T+S E+ +P I A KI ++ + ++ ++ Sbjct: 1 MRNRLKELRARDGFNQTQLAKQAGISRQTVSLIERNDFMPSILTAVKIARIFNEPVENVF 60 Query: 174 FGDE 177 +E Sbjct: 61 IFEE 64 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+K++R + Q ++A A V+L E SI A+ + + Sbjct: 3 NRLKELRARDGFNQTQLAKQAGISRQTVSLIERNDFMPSILTAVKIARIFN 53 >gi|28377509|ref|NP_784401.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1] gi|308181218|ref|YP_003925346.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270341|emb|CAD63242.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1] gi|308046709|gb|ADN99252.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 66 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 RI+++R+ +Q +A + ++ ++ E+G + + A L +S D + Sbjct: 6 RIRELRQKLGLSQSALADKSGVPQTTISAIESG-TNLTYETAKKLARALGVSTDEL 60 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R++ +R+ G+SQ G+P +T+S E T + A+K+ + D Sbjct: 1 MTYTLRIRELRQKLGLSQSALADKSGVPQTTISAIES-GTNLTYETAKKLARALGVSTDE 59 Query: 172 I 172 + Sbjct: 60 L 60 >gi|331086470|ref|ZP_08335549.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410528|gb|EGG89956.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 143 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ R TQKE+AI + ESA+ +E G S + N +IS Sbjct: 3 VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP---- 58 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 V+ L L + R + G+ Q Sbjct: 59 YAMSDPNFDTYVSVMHALFALEDQYGLHAYRDESGVPQ 96 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +G +++ R D+G +Q E + G+ S + NYE G P + KI K Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP 58 >gi|311108474|ref|YP_003981327.1| hypothetical protein AXYL_05312 [Achromobacter xylosoxidans A8] gi|310763163|gb|ADP18612.1| helix-turn-helix family protein 12 [Achromobacter xylosoxidans A8] Length = 190 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 1/87 (1%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 PE + + R+K +R+ + E+A A + ++ EN S + L Sbjct: 7 PEAD-LDRRIAGRLKALRQERGWSLDELAGRAGLSRATLSRLENAEVSPTASALGKLCGA 65 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRL 109 Y ++ + D + + Sbjct: 66 YGLTMSRLMRMVEDDFAPLVPQQAQAV 92 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 1/89 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-FGD 176 LK++R+++G S E G+ +TLS E P K+ + + + Sbjct: 19 LKALRQERGWSLDELAGRAGLSRATLSRLENAEVSPTASALGKLCGAYGLTMSRLMRMVE 78 Query: 177 EVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + P ++A+ + ++S +P Sbjct: 79 DDFAPLVPQQAQAVWVDGSAGFRRRSVSP 107 >gi|326791705|ref|YP_004309526.1| hypothetical protein Clole_2627 [Clostridium lentocellum DSM 5427] gi|326542469|gb|ADZ84328.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 176 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK RK TQKE+A E + +E G ++ L +++ + Sbjct: 2 LGNNIKTARKKLKLTQKELAQQLGIAEITIRKYEKGEREPNLETIEKLAVTLKVTPYELL 61 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G +K+ RK ++Q E + LG+ T+ YE+G P ++ K+ K + Sbjct: 1 MLGNNIKTARKKLKLTQKELAQQLGIAEITIRKYEKGEREPNLETIEKLAVTLKVTPYEL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|291543303|emb|CBL16412.1| Helix-turn-helix [Ruminococcus sp. 18P13] Length = 120 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 33/90 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R TQ E+A ++ + ++ E S+ + + NE +S D + Sbjct: 8 LGQRIRAFRTKKGITQMELAERIDRSAAYMSYVETAYKFCSLDTLVRVANELNVSTDDLL 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + ++ + Sbjct: 68 IDSLTNTIKASNHEFTAILSDCSDYEMRVL 97 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 28/69 (40%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +++ +G R+++ R KG++Q+E + + + +S E + ++ Sbjct: 1 MQINYILLGQRIRAFRTKKGITQMELAERIDRSAAYMSYVETAYKFCSLDTLVRVANELN 60 Query: 167 KHLDWIYFG 175 D + Sbjct: 61 VSTDDLLID 69 >gi|257455791|ref|ZP_05621017.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257446805|gb|EEV21822.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +I+ +RKA N +Q+++A + + + E G + ++ N +++S + Sbjct: 8 KFGQKIRQLRKAKNLSQEQLAELTGFHRNYIGMVERGERNPALVNIEIFANAFDLSLSEL 67 Query: 91 YD 92 +D Sbjct: 68 FD 69 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +++ +RK K +SQ + +L G + + E+G P + L Sbjct: 7 IKFGQKIRQLRKAKNLSQEQLAELTGFHRNYIGMVERGERNPALVNIEIFANAFDLSLSE 66 Query: 172 IY 173 ++ Sbjct: 67 LF 68 >gi|254465943|ref|ZP_05079354.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206686851|gb|EDZ47333.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 218 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 22/62 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ R+ T ++A ++ ENG S S+ L N + + Sbjct: 34 IGREVRSFRRQQGITVADLANLTGLSIGMLSKIENGNTSPSLTTLQLLANALSVPITSFF 93 Query: 92 DG 93 Sbjct: 94 RR 95 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 2/114 (1%) Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 D + + D ++K L+ AIG ++S R+ +G++ + L G+ LS Sbjct: 7 DTDAVANNLSQDPHRVREGSEKVLE-VAIGREVRSFRRQQGITVADLANLTGLSIGMLSK 65 Query: 146 YEQGRTIPEIKPARKIKQVTKKHLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKK 198 E G T P + + + + + +E K +G ++ + + Sbjct: 66 IENGNTSPSLTTLQLLANALSVPITSFFRRFEETREAVHTKAGEGAETERAGTR 119 >gi|254385553|ref|ZP_05000879.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194344424|gb|EDX25390.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 126 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S L IS + + Sbjct: 8 NLGEYLREQRRQAQLSLRQLAEAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + + G+ N LS E+G P +++ + + + +Y Sbjct: 11 EYLREQRRQAQLSLRQLAEAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAETLY 68 >gi|167820072|ref|ZP_02451752.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 91] Length = 113 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G I+ +R+A +Q+++A A S V E G SI L + + Sbjct: 25 QRFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIAR 84 Query: 90 IY 91 + Sbjct: 85 LL 86 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 GA ++ +R+ + SQ + + G+ S + E+G I I K+ + + + Sbjct: 27 FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 86 >gi|241662630|ref|YP_002980990.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240864657|gb|ACS62318.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 107 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R TQ+++A A S V+ E G+ + SI L I+ ++ Sbjct: 21 IGKRVKVCRVEAELTQEQLAHEALVDRSYVSSIERGVANPSIETLANLCYCMGITLSRLF 80 Query: 92 D 92 + Sbjct: 81 E 81 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG R+K R + ++Q + + S +S+ E+G P I+ + L + Sbjct: 20 AIGKRVKVCRVEAELTQEQLAHEALVDRSYVSSIERGVANPSIETLANLCYCMGITLSRL 79 Query: 173 Y 173 + Sbjct: 80 F 80 >gi|157374747|ref|YP_001473347.1| XRE family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157317121|gb|ABV36219.1| transcriptional regulator, XRE family [Shewanella sediminis HAW-EB3] Length = 510 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 54/182 (29%), Gaps = 51/182 (28%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK N+ T ++++ S +++ E G S + ++ Sbjct: 14 LGTKIRNLRKRNHLTMEDLSARCVRVDADSAPSVSYLSMIERGKRVPSAGMMAVIAAVFQ 73 Query: 85 ISFDWIYDGEVIDRRYEDVT----------------NKKRLDPYAIGARLKS-------- 120 DW D D+ K + AI L Sbjct: 74 KEVDWFLDDVPEDQAITPEKGRRGGISGMALEPSFLFSKDILQIAIPEMLSQTGITGRQF 133 Query: 121 ----IRKDKGMSQ------IEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IR + Q + +G+ L+ ++ I + + Sbjct: 134 AHLLIRAHQEHHQNHFPDLERAAEEIGLKRMPLA----------VEDLMDIAKGLGLSIK 183 Query: 171 WI 172 WI Sbjct: 184 WI 185 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ +P I V Sbjct: 12 HFLGTKIRNLRKRNHLTMEDLSARCVRVDADSAPSVSYLSMIERGKRVPSAGMMAVIAAV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K +DW D+V ++I KG + Sbjct: 72 FQKEVDWFL--DDVPEDQAITPEKGRR 96 >gi|134282471|ref|ZP_01769175.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|167723927|ref|ZP_02407163.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|237508582|ref|ZP_04521297.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|134246028|gb|EBA46118.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|235000787|gb|EEP50211.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] Length = 94 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G I+ +R+A +Q+++A A S V E G SI L + + Sbjct: 6 QRFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIAR 65 Query: 90 IY 91 + Sbjct: 66 LL 67 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 GA ++ +R+ + SQ + + G+ S + E+G I I K+ + + + Sbjct: 8 FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 Query: 174 F--GDEVIVP 181 GD +P Sbjct: 68 SPAGDAEPLP 77 >gi|76817873|ref|YP_337176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710b] gi|217424647|ref|ZP_03456145.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576] gi|254185399|ref|ZP_04891987.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1655] gi|254187284|ref|ZP_04893798.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei Pasteur 52237] gi|76582346|gb|ABA51820.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710b] gi|157934966|gb|EDO90636.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei Pasteur 52237] gi|184209634|gb|EDU06677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1655] gi|217392571|gb|EEC32595.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576] Length = 189 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 PE +V TR++ +R +Q+E+A A ++L E S S+ L Sbjct: 2 PESLSMSNEVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLEC 61 Query: 83 YEISFDWIYDGEVIDRR 99 +S + E+ + R Sbjct: 62 IPMSLAEFFTFEIDENR 78 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R G+SQ E K G+ N T+S EQ R P + +K+ + L + E Sbjct: 15 LRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFFTF-E 73 Query: 178 VIVPKSIKRAKGNQSS 193 + +S+ +G + Sbjct: 74 IDENRSVVSRRGEMPN 89 >gi|254301853|ref|ZP_04969296.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157811641|gb|EDO88811.1| DNA-binding protein [Burkholderia pseudomallei 406e] Length = 88 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G I+ +R+A +Q+++A A S V E G SI L + + Sbjct: 6 QRFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIAR 65 Query: 90 IY 91 + Sbjct: 66 LL 67 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 GA ++ +R+ + SQ + + G+ S + E+G I I K+ + + + Sbjct: 8 FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 >gi|53716572|ref|YP_105616.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|53722368|ref|YP_111353.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|67642241|ref|ZP_00441000.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|76818883|ref|YP_335523.1| transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121597603|ref|YP_990060.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381912|ref|YP_001024022.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126445750|ref|YP_001078595.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|126456449|ref|YP_001075854.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|166999565|ref|ZP_02265402.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167742899|ref|ZP_02415673.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 14] gi|167828452|ref|ZP_02459923.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 9] gi|167849906|ref|ZP_02475414.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] gi|167898508|ref|ZP_02485909.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 7894] gi|167906857|ref|ZP_02494062.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei NCTC 13177] gi|167915218|ref|ZP_02502309.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 112] gi|167923046|ref|ZP_02510137.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] gi|217418478|ref|ZP_03449985.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226198499|ref|ZP_03794066.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|242312902|ref|ZP_04811919.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|254173994|ref|ZP_04880657.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254183723|ref|ZP_04890315.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254191201|ref|ZP_04897706.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254193556|ref|ZP_04899990.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254200408|ref|ZP_04906773.1| DNA-binding protein [Burkholderia mallei FMH] gi|254204434|ref|ZP_04910787.1| DNA-binding protein [Burkholderia mallei JHU] gi|254265606|ref|ZP_04956471.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|254356660|ref|ZP_04972935.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52212782|emb|CAH38814.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52422542|gb|AAU46112.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|76583356|gb|ABA52830.1| possible transcriptional regulator, XRE family, CUPIN domain [Burkholderia pseudomallei 1710b] gi|121225401|gb|ABM48932.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124289932|gb|ABM99201.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126230217|gb|ABN93630.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|126238604|gb|ABO01716.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147748020|gb|EDK55095.1| DNA-binding protein [Burkholderia mallei FMH] gi|147754020|gb|EDK61084.1| DNA-binding protein [Burkholderia mallei JHU] gi|148025687|gb|EDK83810.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157938874|gb|EDO94544.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160695041|gb|EDP85011.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169650309|gb|EDS83002.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184214256|gb|EDU11299.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217397782|gb|EEC37797.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225929422|gb|EEH25442.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|238523345|gb|EEP86784.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242136141|gb|EES22544.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|243064397|gb|EES46583.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254216608|gb|EET05993.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 94 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G I+ +R+A +Q+++A A S V E G SI L + + Sbjct: 6 QRFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIAR 65 Query: 90 IY 91 + Sbjct: 66 LL 67 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 GA ++ +R+ + SQ + + G+ S + E+G I I K+ + + + Sbjct: 8 FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 >gi|319650734|ref|ZP_08004873.1| hypothetical protein HMPREF1013_01478 [Bacillus sp. 2_A_57_CT2] gi|317397591|gb|EFV78290.1| hypothetical protein HMPREF1013_01478 [Bacillus sp. 2_A_57_CT2] Length = 68 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G +++ R N TQKE A ++ +EN S L Y+IS + Sbjct: 2 YPAIGDKLRMKRLTRNLTQKEAAKIIGVSVYMISAWENDRYFPSAVRMEQLAALYDISAE 61 Query: 89 WIYDGE 94 + D + Sbjct: 62 ELLDYD 67 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG +L+ R + ++Q E K++G+ +S +E R P ++ + + + Sbjct: 4 AIGDKLRMKRLTRNLTQKEAAKIIGVSVYMISAWENDRYFPSAVRMEQLAALYDISAEEL 63 Query: 173 YFGD 176 D Sbjct: 64 LDYD 67 >gi|310828547|ref|YP_003960904.1| hypothetical protein ELI_2972 [Eubacterium limosum KIST612] gi|308740281|gb|ADO37941.1| hypothetical protein ELI_2972 [Eubacterium limosum KIST612] Length = 118 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 +G R+K+ RKA +Q ++A + + E + Y + EIS +W+ Sbjct: 3 IGERLKEARKAKGFSQDKLAEAIGTSRTVITDIERDKTEHPRVSYVDTICKTLEISKEWL 62 Query: 91 YDGEVIDRRYEDVTNKKRL 109 E N + Sbjct: 63 LREEGPMAYPLPEWNANEI 81 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLD 170 +IG RLK RK KG SQ + + +G + +++ E+ +T P + I + + + Sbjct: 1 MSIGERLKEARKAKGFSQDKLAEAIGTSRTVITDIERDKTEHPRVSYVDTICKTLEISKE 60 Query: 171 WIYFGDEVIV 180 W+ + + Sbjct: 61 WLLREEGPMA 70 >gi|307610830|emb|CBX00445.1| phage repressor [Legionella pneumophila 130b] Length = 220 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIG-ANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G RI RK T KE+A + ++ +E G S A L ++ + Sbjct: 2 DIREQIGNRITKARKELGITIKELATRTVELSPARISNWEQGTRSPGPLEAKLLADQLNV 61 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGAR 117 S ++ + + + +L I + Sbjct: 62 SASYLLCLTDNPQGDLIQSYENKLRYIPILSM 93 Score = 38.8 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKL-LGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ RK+ G++ E + + + +SN+EQG P A+ + ++ Sbjct: 9 NRITKARKELGITIKELATRTVELSPARISNWEQGTRSPGPLEAKLLADQLNVSASYLLC 68 Query: 175 GDEVIVPKSIKRAKG 189 + I+ + Sbjct: 69 LTDNPQGDLIQSYEN 83 >gi|294624392|ref|ZP_06703085.1| XRE family transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601307|gb|EFF45351.1| XRE family transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 105 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG I+ R +Q +A AN S +++ EN ++ + + + Sbjct: 2 NVGQAIRLCRTQRGVSQSAIASRANCSVSYLSMLENNKRDPTLSTVTQIAEALRVPVGLL 61 Query: 91 Y 91 + Sbjct: 62 F 62 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ R +G+SQ S LS E + P + +I + + + Sbjct: 1 MNVGQAIRLCRTQRGVSQSAIASRANCSVSYLSMLENNKRDPTLSTVTQIAEALRVPVGL 60 Query: 172 IY 173 ++ Sbjct: 61 LF 62 >gi|257438941|ref|ZP_05614696.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198619|gb|EEU96903.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 100 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ ++RK N+ TQ+ +A ++ +E G L + Y S D++ Sbjct: 2 LGERLAELRKLNDDTQQTLADKLGISVWSIRAWEQGKSYPFSNVLLAICKLYGTSADYLL 61 Query: 92 DGEVIDRRYEDVTNKKRL 109 ID E ++RL Sbjct: 62 GLTDIDPSDEARKQRQRL 79 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 36/86 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RL +RK +Q LG+ ++ +EQG++ P I ++ D++ Sbjct: 1 MLGERLAELRKLNDDTQQTLADKLGISVWSIRAWEQGKSYPFSNVLLAICKLYGTSADYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ ++ + + ++ + Sbjct: 61 LGLTDIDPSDEARKQRQRLTEEEQNE 86 >gi|227486494|ref|ZP_03916810.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235542|gb|EEI85557.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 76 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ RK +Q + +++N E G S++ A + N + I+D Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCMYQIFDL 62 Query: 94 EVIDRRY 100 + + Sbjct: 63 DGEETYK 69 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ RK G+SQ GK +G+ ++++ E G+TIP +K A I + I+ Sbjct: 1 MNNRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCMYQIF 60 Query: 174 --FGDEV 178 G+E Sbjct: 61 DLDGEET 67 >gi|239814897|ref|YP_002943807.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801474|gb|ACS18541.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 89 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +D G I+ +R+ +Q+ +A A+ S V E G SI A L + Sbjct: 1 MKDFVEDFGVTIRQLREGKGWSQEALAERADLNRSYVGEVERGRVIPSIVTAHKLAAALD 60 Query: 85 ISFDWIY 91 I+ + Sbjct: 61 INMVGLL 67 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +R+ KG SQ + + S + E+GR IP I A K+ ++ + E Sbjct: 12 IRQLREGKGWSQEALAERADLNRSYVGEVERGRVIPSIVTAHKLAAALDINMVGLLLRCE 71 Query: 178 VIVPKSIKR 186 + + R Sbjct: 72 QLEQSRLVR 80 >gi|254168446|ref|ZP_04875290.1| CBS domain pair protein [Aciduliprofundum boonei T469] gi|197622501|gb|EDY35072.1| CBS domain pair protein [Aciduliprofundum boonei T469] Length = 184 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK+ RK TQKE+A + +SA+ E G + S A+ + N + + Sbjct: 8 IKERRKRLGWTQKELAERSGVSQSAITKIEKGDMNPSYTLAVKIFNALD--EGEREKYKG 65 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + L P + + + K+ G+SQ Sbjct: 66 KKAKDLMNKDVIFLSPKDRVKKARELMKEHGISQ 99 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + +K RK G +Q E + G+ S ++ E+G P A KI Sbjct: 1 MMPSLSSIKERRKRLGWTQKELAERSGVSQSAITKIEKGDMNPSYTLAVKIFNALD 56 >gi|171778925|ref|ZP_02919987.1| hypothetical protein STRINF_00848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282571|gb|EDT47995.1| hypothetical protein STRINF_00848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +RK +SQ E + LG+ T+ + E+GR ++ A KI + ++ I+ Sbjct: 1 METRIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNASLELAHKIAEYFGMTIEEIF 60 Query: 174 FGDE 177 DE Sbjct: 61 IFDE 64 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+++RKAN +Q E+A + E G + S+ A + + ++ + I+ Sbjct: 4 RIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNASLELAHKIAEYFGMTIEEIF 60 >gi|159045315|ref|YP_001534109.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157913075|gb|ABV94508.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 123 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 34/97 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ R TQ+++A + +E GM S + + + + + Sbjct: 9 VGKRVRHRRWMVGMTQQQLADKVGIKFQQIQKYETGMNRVSASRLWEIASSLGVPVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +G + + D + L+ +R + Sbjct: 69 EGLGAAQVAQTHDIDMPGDLLSDKEALELVRSYYAIP 105 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G R++ R GM+Q + +G+ + YE G +I Sbjct: 1 MKHPVDVHVGKRVRHRRWMVGMTQQQLADKVGIKFQQIQKYETGMNRVSASRLWEIASSL 60 Query: 166 KKHLDWIYFG 175 + + + G Sbjct: 61 GVPVSFFFEG 70 >gi|118587295|ref|ZP_01544722.1| transcriptional regulator, GntR family [Oenococcus oeni ATCC BAA-1163] gi|118432284|gb|EAV39023.1| transcriptional regulator, GntR family [Oenococcus oeni ATCC BAA-1163] Length = 142 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 19/127 (14%) Query: 34 TRIKDIRKANNKTQKEMAIGANQ---------LESAVNLFENGMCSTSIRYALYLRNEYE 84 R++ +R+ T K++A N+ ES + +E G + + L + ++ Sbjct: 4 ERLRALRRGKGITLKQLAKALNKNISRGEAKNTESQIGNWERGERNPNYLEVKKLADYFD 63 Query: 85 ISFDWIYDGEVIDRRYEDVT---------NKKRLDPYAIGARLKSIRKDKG-MSQIEFGK 134 +S D++ D+ N LD L+ I + G Sbjct: 64 VSMDYLVGRYNNDQVDLAKAMITSSKLTYNDTPLDNNDKYEILQLISGYLHARGRRSTGD 123 Query: 135 LLGMPNS 141 ++ + + Sbjct: 124 VINVDHQ 130 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLG--MPN-------STLSNYEQGRTIPEIKPARKIKQ 163 RL+++R+ KG++ + K L + S + N+E+G P +K+ Sbjct: 1 MFPERLRALRRGKGITLKQLAKALNKNISRGEAKNTESQIGNWERGERNPNYLEVKKLAD 60 Query: 164 VTKKHLDWIY 173 +D++ Sbjct: 61 YFDVSMDYLV 70 >gi|73748040|ref|YP_307279.1| hypothetical protein cbdb_B6 [Dehalococcoides sp. CBDB1] gi|73659756|emb|CAI82363.1| hypothetical protein, containing a helix-turn-helix motif [Dehalococcoides sp. CBDB1] Length = 123 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 1/82 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEI 85 + +VG ++ +R + +E+ + + ++ E+G S L Y + Sbjct: 4 EEKTNVGVYLRSLRDTKGLSLREVERKSGVSNAVLSQIESGQVKRPSPTTLYKLAELYGV 63 Query: 86 SFDWIYDGEVIDRRYEDVTNKK 107 +D + V + Sbjct: 64 PYDELMSRAGYPVPSRHVNETQ 85 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLDWIYFG 175 L+S+R KG+S E + G+ N+ LS E G+ P K+ ++ D + Sbjct: 12 YLRSLRDTKGLSLREVERKSGVSNAVLSQIESGQVKRPSPTTLYKLAELYGVPYDELMSR 71 Query: 176 DEVIVPKS 183 VP Sbjct: 72 AGYPVPSR 79 >gi|330467102|ref|YP_004404845.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810073|gb|AEB44245.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 476 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++ +R+ + TQ E+A + S +N EN + + L L + + Sbjct: 11 AKLRRLRREHGLTQAELARRLDISTSYLNQIENSQRTLTAPILLRLAKVLGVDPE 65 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+L+ +R++ G++Q E + L + S L+ E + ++ +V + Sbjct: 7 LYAHAKLRRLRREHGLTQAELARRLDISTSYLNQIENSQRTLTAPILLRLAKVLGVDPEH 66 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 D + ++ A +++S Sbjct: 67 FADTDAERLGADVRTALADEAS 88 >gi|317508458|ref|ZP_07966127.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC BAA-974] gi|316253236|gb|EFV12637.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC BAA-974] Length = 486 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R +Q +A S +N E+ + ++ L L + + ++ Sbjct: 21 VGPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPITMPLLLRLSEKLGVDTEFFT 80 Query: 92 DGEVID 97 E Sbjct: 81 AQEEAR 86 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 28/69 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R ++G+SQ+ L + S L+ E + ++ + ++ +E Sbjct: 25 LRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPITMPLLLRLSEKLGVDTEFFTAQEE 84 Query: 178 VIVPKSIKR 186 + I+ Sbjct: 85 ARLVAEIRE 93 >gi|308370626|ref|ZP_07422163.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308374223|ref|ZP_07435239.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308375371|ref|ZP_07443665.2| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308376634|ref|ZP_07439483.2| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308378845|ref|ZP_07484047.2| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308331404|gb|EFP20255.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308342691|gb|EFP31542.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308346576|gb|EFP35427.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308350499|gb|EFP39350.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308359101|gb|EFP47952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] Length = 478 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ +R+ TQ +A + S VN EN ++ L L +++S + Sbjct: 11 GARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYF 68 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GARL+ +R+++G++Q+ K L + S ++ E + + + + + Sbjct: 9 FSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYF 68 >gi|302336146|ref|YP_003801353.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319986|gb|ADK68473.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 324 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K + +RI R+ TQ +A + AV+ +E G+ + L +I Sbjct: 4 KSLSSRISSHRRVLGMTQAALAQMLGVSDKAVSRWERGVGFPDVTLLEPLATALQIDLSE 63 Query: 90 IYDG 93 + G Sbjct: 64 LVIG 67 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D ++ +R+ S R+ GM+Q ++LG+ + +S +E+G P++ + + Sbjct: 1 MDAKSLSSRISSHRRVLGMTQAALAQMLGVSDKAVSRWERGVGFPDVTLLEPLATALQID 60 Query: 169 LDWIYFG-------DEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 L + G E ++ + N ++ K + Sbjct: 61 LSELVIGPCEVGACTEDAHTETADAEESNDKGASVEEISKDT 102 >gi|296110945|ref|YP_003621326.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU 11154] gi|295832476|gb|ADG40357.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU 11154] Length = 91 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD+ +K R + +Q +A + AV+ +E G I + L N + S Sbjct: 23 KDIQYNLKKYRTLSGISQDRLADLLCVSQVAVSNYETGKRIPDIDNLIKLSNILQTSVPE 82 Query: 90 IY 91 + Sbjct: 83 LI 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I LK R G+SQ LL + +SNYE G+ IP+I K+ + + + + Sbjct: 25 IQYNLKKYRTLSGISQDRLADLLCVSQVAVSNYETGKRIPDIDNLIKLSNILQTSVPELI 84 >gi|291525631|emb|CBK91218.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 72 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V I++IR+ Q ++A V E G + S + L + + + + ++ Sbjct: 3 VTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVEDVF 62 Query: 92 DGEV 95 E Sbjct: 63 HVED 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 31/66 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ ++ IR+ +G+ Q + +G T+ E+G + P + +I + ++ Sbjct: 1 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVED 60 Query: 172 IYFGDE 177 ++ ++ Sbjct: 61 VFHVED 66 >gi|260426928|ref|ZP_05780907.1| transcriptional regulator, XRE family with cupin sensor [Citreicella sp. SE45] gi|260421420|gb|EEX14671.1| transcriptional regulator, XRE family with cupin sensor [Citreicella sp. SE45] Length = 189 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+KD R+A + +A + S V+ E G + ++ L ++ F + D Sbjct: 16 RLKDARQAKGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRALQVDFAGLLD 73 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK R+ KG+S KL G+ S +S E+G + P + + + + + Sbjct: 17 LKDARQAKGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRALQVDFAGLL 72 >gi|257054325|ref|YP_003132157.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017] gi|256584197|gb|ACU95330.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017] Length = 156 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 KD+G I+ R + ++++ A ++ E G+ S + IS + Sbjct: 35 KDIGAYIRQQRNHAKISLRQLSKLAGVSNPYLSQIERGLRKPSAEILQQIAKGLRISAEA 94 Query: 90 IY 91 +Y Sbjct: 95 LY 96 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A ++ R +S + KL G+ N LS E+G P + ++I + + + +Y Sbjct: 39 AYIRQQRNHAKISLRQLSKLAGVSNPYLSQIERGLRKPSAEILQQIAKGLRISAEALY 96 >gi|229030553|ref|ZP_04186588.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1271] gi|228730720|gb|EEL81665.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1271] Length = 440 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++G RI+ +R TQ E+ + ++ E+G S + + + E Sbjct: 13 RESRKMEIGERIRQVRMHKGLTQGELVSEI-CSVTYLSRIESGKIKPSSSFITKVSKKLE 71 Query: 85 ISFDWIYDG--EVIDRRYEDVTNKKRLDPYAIGARL 118 + D++ +G E I + NK + D A L Sbjct: 72 VKSDYLINGNYEEIKFTIFKICNKYKKDKSITEADL 107 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 + IG R++ +R KG++Q E + + LS E G+ P Sbjct: 6 KSMKWLSRESRKMEIGERIRQVRMHKGLTQGELVSEI-CSVTYLSRIESGKIKPSSSFIT 64 Query: 160 KIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 K+ + + D++ G+ + +I + KS + Sbjct: 65 KVSKKLEVKSDYLINGNYEEIKFTIFKICNKYKKDKSITE 104 >gi|256825390|ref|YP_003149350.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Kytococcus sedentarius DSM 20547] gi|256688783|gb|ACV06585.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Kytococcus sedentarius DSM 20547] Length = 507 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +Y +G I+D R TQ ++A N +SAV E G + S+ + + Sbjct: 2 TDEYLARIGNLIRDARLHRGMTQTQVADILNTSQSAVARMEQGKQNLSLETVAKVSEALD 61 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ R +GM+Q + +L S ++ EQG+ ++ K+ + + Sbjct: 11 NLIRDARLHRGMTQTQVADILNTSQSAVARMEQGKQNLSLETVAKVSEALDHDI 64 >gi|284989260|ref|YP_003407814.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062505|gb|ADB73443.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 150 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 22/140 (15%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ R+A T++E+A + + + ++E G+ R+ L +S + Sbjct: 8 GDRLRAAREAVGLTREELATRLDLSSPARIRVWELGLERPRPRFIPRLAAALHVSPYHLL 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE--QG 149 D + D L ++R G + E G+ T E + Sbjct: 68 DVDPGDPP------------------LAALRLAAGFATNELTAP-GLSVMTYVRLEDGRP 108 Query: 150 RTIPEIKPARKIKQVTKKHL 169 P + I QV + Sbjct: 109 GVDPSDRVVTAIAQVLGVDV 128 >gi|167463752|ref|ZP_02328841.1| hypothetical protein Plarl_14544 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 111 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 48/124 (38%), Gaps = 14/124 (11%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 T +E++ + + + E S+R L + E+ ++ Sbjct: 1 MTIEELSNSIGISSTTILMLEKHNNKASLRTLKLLSSVLEVPISYL-------------G 47 Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP-EIKPARKIKQ 163 +++ G +++ R G+++ E + + T+ N+E + +P ++K +I + Sbjct: 48 MFEKMPDSTFGDKVRKARYYHGLTKEELAAQIKVDKKTIQNWESNKCVPRDMKKLNQIIK 107 Query: 164 VTKK 167 + Sbjct: 108 ILHM 111 Score = 40.7 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST-SIRYALYLRNEYE 84 G +++ R + T++E+A + + +E+ C ++ + Sbjct: 57 FGDKVRKARYYHGLTKEELAAQIKVDKKTIQNWESNKCVPRDMKKLNQIIKILH 110 Score = 36.1 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI---------YFGDE 177 M+ E +G+ ++T+ E+ ++ + + V + + ++ FGD+ Sbjct: 1 MTIEELSNSIGISSTTILMLEKHNNKASLRTLKLLSSVLEVPISYLGMFEKMPDSTFGDK 60 Query: 178 VIVPKSIKRAKGNQSSKKSKKDKKS 202 V + + + + K DKK+ Sbjct: 61 VRKARYYHGLTKEELAAQIKVDKKT 85 >gi|163869009|ref|YP_001610239.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018686|emb|CAK02244.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 146 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ RK +QKE+ + +E G+ + + +IS + + Sbjct: 20 IGRKIRFRRKMLKISQKELGDRLGVTFQQIQKYEKGLNRVGAGRLQEIADILDISI-FFF 78 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++ + + + ++ LKS R+ K Q Sbjct: 79 YADISTKEHVLLPYEEMTSSQEEHTLLKSFRELKPKQQKAI 119 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 1/108 (0%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + T + +IG +++ RK +SQ E G LG+ + YE+G Sbjct: 1 MQTKNPYFPTKNPHSNDISIGRKIRFRRKMLKISQKELGDRLGVTFQQIQKYEKGLNRVG 60 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 ++I + + + ++ D + + SS++ KS Sbjct: 61 AGRLQEIADILDISI-FFFYADISTKEHVLLPYEEMTSSQEEHTLLKS 107 >gi|157369697|ref|YP_001477686.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157321461|gb|ABV40558.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 189 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 9/78 (11%), Positives = 28/78 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ D+R+ + +E+A + ++ E S + L + Y ++ + Sbjct: 12 LAQRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLCSAYGLTMSRLL 71 Query: 92 DGEVIDRRYEDVTNKKRL 109 + ++ + Sbjct: 72 SEVEDEPPELLHREQQTV 89 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL +R+ +G S E + G+ +TLS E+ T P K+ + + Sbjct: 14 QRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLCSAYGLTMSRLLSE 73 Query: 176 DEVIVPKSIKRAK 188 E P+ + R + Sbjct: 74 VEDEPPELLHREQ 86 >gi|37912891|gb|AAR05227.1| predicted transcriptional regulators [uncultured marine proteobacterium ANT32C12] Length = 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R +Q +A + VN ENG S+ A+ L + +E+ D I+ Sbjct: 3 NRLKELRADRELSQSALAEILSVSRQTVNSIENGKFDPSLTLAIKLTHYFEMPLDKIFTY 62 Query: 94 EVI 96 + Sbjct: 63 QEE 65 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R D+ +SQ ++L + T+++ E G+ P + A K+ + LD I+ Sbjct: 1 MKNRLKELRADRELSQSALAEILSVSRQTVNSIENGKFDPSLTLAIKLTHYFEMPLDKIF 60 Query: 174 FGDEV 178 E Sbjct: 61 TYQEE 65 >gi|330837028|ref|YP_004411669.1| helix-turn-helix domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748931|gb|AEC02287.1| helix-turn-helix domain protein [Spirochaeta coccoides DSM 17374] Length = 191 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 33/86 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + Q +G I+ +R + N T ++ + ++ ++ E+ + ++ + Sbjct: 1 MEQRPPKIGKNIQKLRMSRNLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKISKGLG 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 + + D + +R V + D Sbjct: 61 VELQDVLDIDDQIKRTFVVNPVQADD 86 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R + ++ + G+ + LS E + P + KI + L + Sbjct: 10 KNIQKLRMSRNLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKISKGLGVELQDVLDI 69 Query: 176 DEVIV 180 D+ I Sbjct: 70 DDQIK 74 >gi|300855029|ref|YP_003780013.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435144|gb|ADK14911.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++ +I+++RK TQ+E+A N + ENG + SI A + + ++ + Sbjct: 4 QNMKNKIRELRKERKITQEELADFCNVTRQTIISLENGKYNPSIFLAYKIAKIFNMTIEQ 63 Query: 90 IYDGEVID 97 ++ E + Sbjct: 64 VFIFEEEE 71 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 35/70 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + +++ +RK++ ++Q E + T+ + E G+ P I A KI ++ Sbjct: 1 MNLQNMKNKIRELRKERKITQEELADFCNVTRQTIISLENGKYNPSIFLAYKIAKIFNMT 60 Query: 169 LDWIYFGDEV 178 ++ ++ +E Sbjct: 61 IEQVFIFEEE 70 >gi|294676430|ref|YP_003577045.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475250|gb|ADE84638.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 120 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 3/100 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E GM S + + ++ + + Sbjct: 9 VGKRIRHRRWLVGVTQQQLADKVGIKFQQIQKYETGMNRVSASRLWDIADALDVPVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 +G + T + D ++ L +R + + + Sbjct: 69 EGLS---GEDPNTAAQEGDLFSDKEALALVRSYYAIPEAQ 105 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G R++ R G++Q + +G+ + YE G I Sbjct: 1 MKHPVDVHVGKRIRHRRWLVGVTQQQLADKVGIKFQQIQKYETGMNRVSASRLWDIADAL 60 Query: 166 KKHLDWIYFG 175 + + + G Sbjct: 61 DVPVSFFFEG 70 >gi|268611488|ref|ZP_06145215.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 122 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 42/99 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ IRK + KE++ ++ +E G SI + L + +++S D++ D Sbjct: 5 EKLRSIRKELKYSVKEISEHTGIPYRSLQSYEMGTRKPSIEVLVKLSDFFQVSSDYLLDI 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 E ++++ + D + + + + Q E Sbjct: 65 ETEKSEEKNISGLSKPDEEFVMQNQEQLIQILKEKQSEI 103 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +L+SIRK+ S E + G+P +L +YE G P I+ K+ + D+ Sbjct: 1 MSFPEKLRSIRKELKYSVKEISEHTGIPYRSLQSYEMGTRKPSIEVLVKLSDFFQVSSDY 60 Query: 172 IYFGDEVIVPK 182 + + + Sbjct: 61 LLDIETEKSEE 71 >gi|257439384|ref|ZP_05615139.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198259|gb|EEU96543.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 90 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 10/88 (11%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDI------RKANNKTQKEMAIGANQLESAVNLF 64 ++ + T PE+R ++ +G + + I RKA TQK++A ++ ++ F Sbjct: 3 YRTYKMKTFAEKPEVRAEYEQLGPQYEAICAAIESRKAAGLTQKQLAEKMGTAQANISRF 62 Query: 65 ENGMCSTSIRYALYLR----NEYEISFD 88 ENG + S+ + + +SF+ Sbjct: 63 ENGNSNPSLEFLQKMAACMGKTLHVSFE 90 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 RK G++Q + + +G + +S +E G + P ++ +K+ K L Sbjct: 36 ESRKAAGLTQKQLAEKMGTAQANISRFENGNSNPSLEFLQKMAACMGKTL 85 >gi|257056813|ref|YP_003134645.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586685|gb|ACU97818.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 475 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ +R++ + +Q E+A S +N E+ ++ L + + + ++ Sbjct: 7 GARLRHLRESRSMSQAELARLLEISPSYLNQIEHNTRPLTVPVLLRITEAFGVDAEFF 64 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + GARL+ +R+ + MSQ E +LL + S L+ E + +I + Sbjct: 1 MSKTFAGARLRHLRESRSMSQAELARLLEISPSYLNQIEHNTRPLTVPVLLRITEAFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 ++ D + ++ A ++S Sbjct: 61 AEFFANNDTSRLVADVREALLDES 84 >gi|256397327|ref|YP_003118891.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363553|gb|ACU77050.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 165 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I++ R+ + +++A A ++ E G+ S L IS + +Y Sbjct: 14 LGEYIREQRRNAEYSVRQLAQAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLY 73 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 29/73 (39%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 L +G ++ R++ S + + G+ N LS E+G P + ++ Sbjct: 1 MPPNPLGALPIGPLGEYIREQRRNAEYSVRQLAQAAGVSNPYLSQIERGLRKPSAEILQQ 60 Query: 161 IKQVTKKHLDWIY 173 + + + + +Y Sbjct: 61 LAKALRISAETLY 73 >gi|227484822|ref|ZP_03915138.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227237182|gb|EEI87197.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 70 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++IRK TQ+E+A V ENG + SI A + +E++ + I+ Sbjct: 3 NRLEEIRKHKGITQEELAKILEVSRQTVGSLENGRYNPSIILAFKIARYFEMAIEDIFIY 62 Query: 94 EVIDRRYE 101 E + E Sbjct: 63 EEENVNEE 70 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK KG++Q E K+L + T+ + E GR P I A KI + + ++ I+ Sbjct: 1 MKNRLEEIRKHKGITQEELAKILEVSRQTVGSLENGRYNPSIILAFKIARYFEMAIEDIF 60 Query: 174 FGDEVIVPKS 183 +E V + Sbjct: 61 IYEEENVNEE 70 >gi|227549873|ref|ZP_03979922.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078128|gb|EEI16091.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 71 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R+ MSQ E + G+ T++N E+G P + A +I + K ++ ++ Sbjct: 7 NMVRRWRRWLDMSQAELAEAAGVSRQTIANIEKGNYSPSVHLALRICRTLGKTVEQVFGN 66 Query: 176 D 176 + Sbjct: 67 E 67 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ R+ + +Q E+A A + E G S S+ AL + + + ++ E Sbjct: 9 VRRWRRWLDMSQAELAEAAGVSRQTIANIEKGNYSPSVHLALRICRTLGKTVEQVFGNE 67 >gi|56697797|ref|YP_168167.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56679534|gb|AAV96200.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 123 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 37/134 (27%), Gaps = 23/134 (17%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ R TQ+++A + +E G S + ++ + + Sbjct: 9 VGKRVRHRRWLIGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIAEALDVPVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 +G + D + L + S + E R Sbjct: 69 EGLEEAEKVVAEKPSVPADLMGDK------------------EALDLVRSYYAIPENQRR 110 Query: 152 IPEIKPARKIKQVT 165 ++ +V Sbjct: 111 R-----LFELARVL 119 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 3/71 (4%) Query: 119 KSIRKDK---GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 K +R + GM+Q + + +G+ + YE G I + + + + G Sbjct: 11 KRVRHRRWLIGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIAEALDVPVSFFFEG 70 Query: 176 DEVIVPKSIKR 186 E ++ Sbjct: 71 LEEAEKVVAEK 81 >gi|30023206|ref|NP_834837.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229050832|ref|ZP_04194384.1| hypothetical protein bcere0027_47870 [Bacillus cereus AH676] gi|229130416|ref|ZP_04259374.1| hypothetical protein bcere0015_48510 [Bacillus cereus BDRD-Cer4] gi|29898766|gb|AAP12038.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|228653115|gb|EEL08995.1| hypothetical protein bcere0015_48510 [Bacillus cereus BDRD-Cer4] gi|228722488|gb|EEL73881.1| hypothetical protein bcere0027_47870 [Bacillus cereus AH676] Length = 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K++ + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQNHITQVEMAKVMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK N+ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQNHITQVEMAKVMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|328464873|gb|EGF36173.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 56 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +R + TQ+E+A N +N EN ++ A L + + + D ++ Sbjct: 2 LRTQQHLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALARQLQTTVDHLFQ 55 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 24/53 (45%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +R + ++Q E + + T++ E + P + A + + + +D ++ Sbjct: 2 LRTQQHLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALARQLQTTVDHLF 54 >gi|295838009|ref|ZP_06824942.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74] gi|295826798|gb|EFG65058.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74] Length = 120 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R+A + +++A A ++ E G+ S L IS + +Y Sbjct: 9 LGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLY 68 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 LD +G L+ R+ +S + G+ N LS E+G P + +++ + + Sbjct: 4 LDVGGLGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRIS 63 Query: 169 LDWIY 173 + +Y Sbjct: 64 AETLY 68 >gi|260589839|ref|ZP_05855752.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|325662733|ref|ZP_08151327.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium 4_1_37FAA] gi|260539646|gb|EEX20215.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|325470970|gb|EGC74198.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium 4_1_37FAA] Length = 143 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ R TQKE+AI + ESA+ +E G S + N +IS Sbjct: 3 VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP---- 58 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 V+ L L + R + G+ Q Sbjct: 59 YAMSDPNFDTYVSVMHALFALEDQYGLHAYRDESGVPQ 96 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +G +++ R D+G +Q E + G+ S + NYE G P + KI K Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP 58 >gi|167766468|ref|ZP_02438521.1| hypothetical protein CLOSS21_00974 [Clostridium sp. SS2/1] gi|167711877|gb|EDS22456.1| hypothetical protein CLOSS21_00974 [Clostridium sp. SS2/1] Length = 123 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q +G R++ RK + +Q+ +A + V+ E G + SI + L Sbjct: 15 QELIQLGERVRQKRKDCHLSQETLAEKVGISVNTVSRIEGGQAAISIEIFVKLVEVLGAD 74 Query: 87 FDWIYDGEVIDRRYE 101 + + R Sbjct: 75 ANELLGKNPEGDRNP 89 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 35/85 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RKD +SQ + +G+ +T+S E G+ I+ K+ +V + + Sbjct: 22 ERVRQKRKDCHLSQETLAEKVGISVNTVSRIEGGQAAISIEIFVKLVEVLGADANELLGK 81 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 + + + + K+ K Sbjct: 82 NPEGDRNPAHKMVSRVLNLQPKEQK 106 >gi|167760209|ref|ZP_02432336.1| hypothetical protein CLOSCI_02582 [Clostridium scindens ATCC 35704] gi|167662092|gb|EDS06222.1| hypothetical protein CLOSCI_02582 [Clostridium scindens ATCC 35704] Length = 119 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 41/96 (42%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 N D IG +K R+ +GM++ + ++G + + E P I+ ++ Sbjct: 5 NNDFDFDFMPIGQAIKKAREARGMTREQLAGIIGYAPRHIQSIENEGQHPSIELFIQLIT 64 Query: 164 VTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +D F ++ + S++R Q K + ++ Sbjct: 65 MFDVSVDEYIFPEKEVKKSSVRRRLDAQLDKLNDRE 100 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD-WI 90 +G IK R+A T++++A + EN SI + L +++S D +I Sbjct: 15 IGQAIKKAREARGMTREQLAGIIGYAPRHIQSIENEGQHPSIELFIQLITMFDVSVDEYI 74 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + + +LD Sbjct: 75 FPEKEVKKSSVRRRLDAQLDKLNDRE 100 >gi|241113139|ref|YP_002972974.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861347|gb|ACS59013.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R A+ +Q+E+A S ++L E+ + S+ + + I Sbjct: 4 DIGNRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEF 63 Query: 91 YDGEVIDRRY 100 + E R Sbjct: 64 FAFEPERPRK 73 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R +SQ E K G+PNST+S E + P + ++I L + Sbjct: 7 NRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFFAF 66 Query: 176 DEVIVPKSIKRAKG 189 + K+ A+ Sbjct: 67 EPERPRKAFYAAEE 80 >gi|148378758|ref|YP_001253299.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153933921|ref|YP_001383147.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937706|ref|YP_001386695.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288242|emb|CAL82316.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152929965|gb|ABS35465.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933620|gb|ABS39119.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 64 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V ++K R + +Q+++A +++ E+G + S++ + + + + ++ Sbjct: 2 VNRKMKIARVECDLSQQQLAEKVGVTRQTISMIESGKYNPSLKLCIGICEVLNKTLNDLF 61 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + ++K R + +SQ + + +G+ T+S E G+ P +K I +V K L+ + Sbjct: 1 MVNRKMKIARVECDLSQQQLAEKVGVTRQTISMIESGKYNPSLKLCIGICEVLNKTLNDL 60 Query: 173 YFGD 176 ++ D Sbjct: 61 FWED 64 >gi|94990056|ref|YP_598156.1| Cro/CI family transcriptional regulator [Streptococcus phage 10270.1] gi|94990314|ref|YP_598414.1| Cro/CI family transcriptional regulator [Streptococcus phage 10270.2] gi|94994236|ref|YP_602334.1| Cro/CI family transcriptional regulator [Streptococcus phage 10750.2] gi|94543564|gb|ABF33612.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10270.1] gi|94543822|gb|ABF33870.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10270.2] gi|94547744|gb|ABF37790.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10750.2] Length = 104 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++RK TQ+++A + +EN ++ A L + +++S ++ Sbjct: 2 NRIKELRKEKGLTQQDLAEEIYVHYRTIQRWEN-KHKIALDQAQLLADYFDVSVAYLLGY 60 Query: 94 EVIDRRYEDVTN 105 + +D Sbjct: 61 SDTTKDNKDFIT 72 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +RK+KG++Q + + + + T+ +E + + A+ + + ++ Sbjct: 1 MNRIKELRKEKGLTQQDLAEEIYVHYRTIQRWEN-KHKIALDQAQLLADYFDVSVAYLLG 59 Query: 175 GDEVIVPK----SIKRAKGNQSSKKSK 197 + +I + N+ K+S Sbjct: 60 YSDTTKDNKDFITISVKEYNELKKRSD 86 >gi|114049377|ref|YP_739927.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|113890819|gb|ABI44870.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] Length = 107 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS----NYEQGRTIPEIKPARKIKQV 164 ++ I RLK RK G +Q++ G ++GM + S +YE+GR P+I+ +K+ Sbjct: 1 MEANPIPNRLKQARKQAGYTQMQLGVMIGMDEGSASGRMNHYEKGRHTPDIRTLKKMANA 60 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 L++ + D++ SI+ + + K+ Sbjct: 61 LGVPLNYFFCEDDISAELSIQIDRLSPEKKQ 91 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 4/79 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYALYLRNEYEISF 87 + R+K RK TQ ++ + E + +N +E G + IR + N + Sbjct: 6 IPNRLKQARKQAGYTQMQLGVMIGMDEGSASGRMNHYEKGRHTPDIRTLKKMANALGVPL 65 Query: 88 DWIYDGEVIDRRYEDVTNK 106 ++ + + I ++ Sbjct: 66 NYFFCEDDISAELSIQIDR 84 >gi|325697167|gb|EGD39054.1| transcriptional regulator [Streptococcus sanguinis SK160] Length = 108 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +++ + R+K++R + Q E+A A ++L E G + SI A + + + Sbjct: 36 KEFMMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIAFKIAHIFNE 95 Query: 86 SFD 88 + + Sbjct: 96 NIE 98 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E KL G+ T+S E+G P I A KI + ++++ Sbjct: 39 MMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIAFKIAHIFNENIE 98 Query: 171 WIY 173 ++ Sbjct: 99 NVF 101 >gi|317403875|gb|EFV84348.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 201 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 1/88 (1%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 PE + + R+K +R + E+A A + ++ EN S + L Sbjct: 17 APEAD-LDQRLADRLKTLRVERGWSLDELAGRAGVSRATLSRLENAEVSPTASVLGKLCG 75 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRL 109 Y ++ + D + + L Sbjct: 76 AYGMTMSRLMRMVEDDFTPLVPSAAQAL 103 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 1/85 (1%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + + + + LD + RLK++R ++G S E G+ +TLS E Sbjct: 2 YFHIWDKFPNMENSFAPEADLDQ-RLADRLKTLRVERGWSLDELAGRAGVSRATLSRLEN 60 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIY 173 P K+ + + Sbjct: 61 AEVSPTASVLGKLCGAYGMTMSRLM 85 >gi|295106679|emb|CBL04222.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae 7-10-1-b] Length = 76 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 24/70 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G RIK++R +Q+E A S E G + + + +S Sbjct: 5 DIRSKIGLRIKELRAERGVSQEEFANLIGMSRSYFGEVETGKRNVAAVNLEKIAKGLGVS 64 Query: 87 FDWIYDGEVI 96 +D E Sbjct: 65 LAEFFDSEFF 74 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K +R ++G+SQ EF L+GM S E G+ KI + L + + Sbjct: 14 IKELRAERGVSQEEFANLIGMSRSYFGEVETGKRNVAAVNLEKIAKGLGVSLAEFFDSE 72 >gi|255262941|ref|ZP_05342283.1| DNA-binding protein [Thalassiobium sp. R2A62] gi|255105276|gb|EET47950.1| DNA-binding protein [Thalassiobium sp. R2A62] Length = 209 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K R+ N T E++ ++ ENG S S+ L + + + Sbjct: 25 IGREVKGFRRRQNMTVAELSAMTGLSIGMLSKIENGNTSPSLTTLQTLADALTVPITSFF 84 Query: 92 DG 93 G Sbjct: 85 SG 86 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG +K R+ + M+ E + G+ LS E G T P + + + + Sbjct: 24 AIGREVKGFRRRQNMTVAELSAMTGLSIGMLSKIENGNTSPSLTTLQTLADALTVPITSF 83 Query: 173 YFGDEV 178 + G E Sbjct: 84 FSGFEE 89 >gi|153877010|ref|ZP_02004037.1| hypothetical protein BGP_5257 [Beggiatoa sp. PS] gi|152066527|gb|EDN65964.1| hypothetical protein BGP_5257 [Beggiatoa sp. PS] Length = 74 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +K +R + EMA + +E G + + L +++S D + Sbjct: 7 IGNNLKKLRNNRGLGKSEMAGELGTNYQNIGRWEGGQVDMKLSTFIQLAEFFDVSTDELI 66 Query: 92 DGEVI 96 V Sbjct: 67 RRNVN 71 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R ++G+ + E LG + +E G+ ++ ++ + D + Sbjct: 9 NNLKKLRNNRGLGKSEMAGELGTNYQNIGRWEGGQVDMKLSTFIQLAEFFDVSTDELI 66 >gi|219668525|ref|YP_002458960.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538785|gb|ACL20524.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 69 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 29/65 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R + +Q+++AI + + E G + S++ + + + + ++ + Sbjct: 5 RLKAARAGLDMSQEQLAIAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDLFWED 64 Query: 95 VIDRR 99 + R Sbjct: 65 DKNER 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK+ R MSQ + +G+ T+ E G+ P ++ I + K L+ +++ D+ Sbjct: 6 LKAARAGLDMSQEQLAIAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDLFWEDD 65 >gi|251789116|ref|YP_003003837.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537737|gb|ACT06358.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 81 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R+ +Q+ +A S + E G + ++ L + + E S + ++ Sbjct: 17 LGQTIRQRRELLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLRIADALEWSLEQLF 76 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R+ G+SQ G+ S + E+G + +I + L+ ++ Sbjct: 19 QTIRQRRELLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLRIADALEWSLEQLF 76 >gi|262197484|ref|YP_003268693.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080831|gb|ACY16800.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 131 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G ++ R A TQ+ A E G S+ ++ + E+S Sbjct: 4 ELAATMGREMRRARTAQGLTQERAAEAIGVSVEFYARVERGKSHPSVETFQHIASTLEVS 63 Query: 87 FDWIY 91 D + Sbjct: 64 ADVLL 68 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G ++ R +G++Q + +G+ + E+G++ P ++ + I + D + Sbjct: 9 MGREMRRARTAQGLTQERAAEAIGVSVEFYARVERGKSHPSVETFQHIASTLEVSADVLL 68 Query: 174 FGD 176 D Sbjct: 69 GLD 71 >gi|262200767|ref|YP_003271975.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084114|gb|ACY20082.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 27/71 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +G RI ++R A + + +A A + +++ E+G + +I + Sbjct: 9 AEDRRTAIGARITELRTARSMSLSALARAAGIGKGSLSELESGQRNPTIDTLYAVAGPLG 68 Query: 85 ISFDWIYDGEV 95 + + E Sbjct: 69 VPLSALLGEES 79 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIGAR+ +R + MS + G+ +LS E G+ P I + L + Sbjct: 15 AIGARITELRTARSMSLSALARAAGIGKGSLSELESGQRNPTIDTLYAVAGPLGVPLSAL 74 Query: 173 YFGDEVIVP 181 G+E Sbjct: 75 L-GEESGTE 82 >gi|255656204|ref|ZP_05401613.1| putative regulatory protein [Clostridium difficile QCD-23m63] gi|296450362|ref|ZP_06892119.1| probable regulatory protein [Clostridium difficile NAP08] gi|296878774|ref|ZP_06902775.1| probable regulatory protein [Clostridium difficile NAP07] gi|296260772|gb|EFH07610.1| probable regulatory protein [Clostridium difficile NAP08] gi|296430202|gb|EFH16048.1| probable regulatory protein [Clostridium difficile NAP07] Length = 105 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+ RK N T KE A + E+G + S++ + + IS D + Sbjct: 4 IGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVSILNISADVLI 63 Query: 92 DG 93 Sbjct: 64 KD 65 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG RLK RK ++ EF ++G+ ++ E G+ P +K K + D Sbjct: 1 MNYIGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVSILNISAD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + ++ + + ++ Sbjct: 61 VLIKDITSTGKTYLENDINEELKDLNSRE 89 >gi|77461744|ref|YP_351251.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385747|gb|ABA77260.1| putative DNA-binding protein [Pseudomonas fluorescens Pf0-1] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 +G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WI-YFGDEVIVPKSIK 185 + +F +E++ K + Sbjct: 58 MVEFFSEEILQEKPTQ 73 >gi|75760227|ref|ZP_00740282.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492280|gb|EAO55441.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 186 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 +VG +I RK T K +A A+ S ++ E G+ + S++ + I ++ Sbjct: 7 NVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNF 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + +K++ G + +E L+ + T S+ E Sbjct: 67 FLEDTNTEELVVRADQRKKMTFPESGNVSYELLSPNLDGSLELA-LMNLLPQTASSME 123 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +G ++ + RK G++ +L + S LS E+G T P ++ + I Sbjct: 1 MYMNNINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALN 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 IPL-FNFFLEDTNTEELVVRADQRKK 85 >gi|219667743|ref|YP_002458178.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538003|gb|ACL19742.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 371 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 30/76 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G+ ++ +R+ + + ++ + +S + E+G ++ L IS + Sbjct: 2 DFGSHLRQLRENHMLSTSRLSKLSGLSQSFIFRIESGEKQPTLETLRKLAQGLGISLGEL 61 Query: 91 YDGEVIDRRYEDVTNK 106 E++ ++ Sbjct: 62 LGEEMLSEPQSPKISR 77 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G+ L+ +R++ +S KL G+ S + E G P ++ RK+ Q L Sbjct: 1 MDFGSHLRQLRENHMLSTSRLSKLSGLSQSFIFRIESGEKQPTLETLRKLAQGLGISLGE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + + + P+S K ++ + +K Sbjct: 61 LLGEEMLSEPQSPKISRIIGNIRK 84 >gi|317495181|ref|ZP_07953551.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424] gi|316914603|gb|EFV36079.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424] Length = 181 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R N TQ+E+ + + ++ E + S S+ + + + Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILEVLGCAPKDFF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D E ++ + + Sbjct: 64 DKESTSQKVYYSLEDQTSYEETDEGYI 90 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y+IG RLK +R K ++Q E G+ + +S E+ P ++ I +V Sbjct: 1 MYSIGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILEVLGCAPK 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + D+ + + + +Q+S + + Sbjct: 61 DFF--DKESTSQKVYYSLEDQTSYEETDE 87 >gi|302385374|ref|YP_003821196.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196002|gb|ADL03573.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 184 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 25/78 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V IK +R + A + +S + E G + +I + +++ F + Sbjct: 8 VAENIKRLRTQRKMSLDAAAKASGVSKSMLGQIERGEVNPTIAMVWKIAYGFKVPFTELV 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 D + L Sbjct: 68 SCPEPAYEVVDTAKMQPL 85 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K +R + MS K G+ S L E+G P I KI K + Sbjct: 10 ENIKRLRTQRKMSLDAAAKASGVSKSMLGQIERGEVNPTIAMVWKIAYGFKVPFTELV 67 >gi|238761698|ref|ZP_04622673.1| Transcriptional regulator, XRE family [Yersinia kristensenii ATCC 33638] gi|238700212|gb|EEP92954.1| Transcriptional regulator, XRE family [Yersinia kristensenii ATCC 33638] Length = 196 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R A + T K++A+ ES ++ EN + S S+ L + E + + Sbjct: 14 DLGMRLRHARLAQDITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDL 73 Query: 91 Y 91 Sbjct: 74 M 74 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ R + ++ + +G S LS E P + ++ + ++ + Sbjct: 17 MRLRHARLAQDITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74 >gi|197105969|ref|YP_002131346.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479389|gb|ACG78917.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 143 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 2/107 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG RI+ RK +Q+ +A V +E G S + + + Sbjct: 28 RHVGLRIRMRRKEIGVSQERLAEALGITFQQVQKYERGANRVSASKLWEIAQALKTGVTY 87 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 Y+G ++ + D G L+ + ++Q + L Sbjct: 88 FYEG--LNDHELGDAGRNAQDFMLTGEGLELMSTFPRIAQPALRRKL 132 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ RK+ G+SQ + LG+ + YE+G +I Q K + + Y G Sbjct: 34 IRMRRKEIGVSQERLAEALGITFQQVQKYERGANRVSASKLWEIAQALKTGVTYFYEG 91 >gi|115526032|ref|YP_782943.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519979|gb|ABJ07963.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 84 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 30/81 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +RK + TQ+ A + + V+ E G + ++ +L +S Sbjct: 4 RKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHV 63 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + + ++++ Sbjct: 64 DLIQPDEEASGERSKAARRKV 84 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK+K +Q F ++ G +S E+G+ P + + + DE Sbjct: 13 RLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHVDLIQPDEEA 72 Query: 180 VPKSIKRAK 188 + K A+ Sbjct: 73 SGERSKAAR 81 >gi|317483792|ref|ZP_07942732.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924895|gb|EFV46041.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 137 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 2/93 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + R+K +R A TQ E A + + +E G + + + + +++S + Sbjct: 1 MESLQERLKAVRGA--MTQSEFATRLRTPLTTLGRYERGANMPDLAFIINVCTIFDVSPE 58 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 W+ G + R LK + Sbjct: 59 WLLFGRGVMREQSKEYPSSGCGCRQCPLVLKEL 91 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ RLK++R M+Q EF L P +TL YE+G +P++ + + + Sbjct: 1 MESLQERLKAVRGA--MTQSEFATRLRTPLTTLGRYERGANMPDLAFIINVCTIFDVSPE 58 Query: 171 WIYFGDEVIVPKSIK 185 W+ FG V+ +S + Sbjct: 59 WLLFGRGVMREQSKE 73 >gi|297617503|ref|YP_003702662.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145340|gb|ADI02097.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 70 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 R++ +R+ TQ+++A + + E+G + SI A L + ++ Sbjct: 3 NRLRALREERGLTQEDLASMVDVSRQTIISLEHGRYNPSIILAHKLARVFGLTI 56 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 32/56 (57%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + RL+++R+++G++Q + ++ + T+ + E GR P I A K+ +V + Sbjct: 1 MQNRLRALREERGLTQEDLASMVDVSRQTIISLEHGRYNPSIILAHKLARVFGLTI 56 >gi|323529342|ref|YP_004231494.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323386344|gb|ADX58434.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 210 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R++ + T + + S ++ ENG+ S + + +I + Sbjct: 15 DLGRRVRAARQSQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVLGLKIEIGEL 74 Query: 91 Y 91 + Sbjct: 75 F 75 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ R+ + ++ +L G+ STLS E G P +KI K + ++ Sbjct: 18 RRVRAARQSQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVLGLKIEIGELF 75 >gi|227431795|ref|ZP_03913822.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352478|gb|EEJ42677.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R++++R +Q +A + +E G + + L + +E+S D++ Sbjct: 2 NRLRELRNERGLSQDRLANEMLINIKTLRRYEVGENDPRVAILIDLADYFEVSIDYL 58 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +R ++G+SQ + + TL YE G P + + + +D++ Sbjct: 1 MNRLRELRNERGLSQDRLANEMLINIKTLRRYEVGENDPRVAILIDLADYFEVSIDYL 58 >gi|227484868|ref|ZP_03915184.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227237228|gb|EEI87243.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 145 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 44/134 (32%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 ++ E+ + I + R+K +R + + A SA++ Sbjct: 1 MSSIFVVLTNFFLEFIIFIKYNNLIRRYKMSNRLKQLRTTLKLSGAKFAEPLGVSRSAIS 60 Query: 63 LFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 E G + S + + Y+++ +W+ GE D L A L ++ Sbjct: 61 DIERGRNNLSEQMIKLICTTYKVNENWLRLGEGDMFIASDKIPLDDLTKDADPLELAILK 120 Query: 123 KDKGMSQIEFGKLL 136 + + K L Sbjct: 121 AYFSLDKDLRSKAL 134 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + Y + RLK +R +S +F + LG+ S +S+ E+GR + + I Sbjct: 22 NNLIRRYKMSNRLKQLRTTLKLSGAKFAEPLGVSRSAISDIERGRNNLSEQMIKLICTTY 81 Query: 166 KKHLDWIYFGD 176 K + +W+ G+ Sbjct: 82 KVNENWLRLGE 92 >gi|224824162|ref|ZP_03697270.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603581|gb|EEG09756.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 180 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R +Q+E+A A ++L E S S+ + ++ Sbjct: 2 DIGARLRMVRARFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPMTLSDF 61 Query: 91 YDGEVIDRRY 100 + + Sbjct: 62 FTFDAEPEHK 71 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 34/78 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGARL+ +R G+SQ E K G+ N T+S EQ R P + +K+ + L Sbjct: 1 MDIGARLRMVRARFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPMTLSD 60 Query: 172 IYFGDEVIVPKSIKRAKG 189 + D K A Sbjct: 61 FFTFDAEPEHKVFYNADE 78 >gi|168207478|ref|ZP_02633483.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170661169|gb|EDT13852.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] Length = 93 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 31 DVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +GT ++ IRKA TQ+++A S ++ E+ + S+ + L N ++ + Sbjct: 2 KIGTNLQRIRKAKDPKITQQDLAKATGLSRSYLSDIEHNKYNPSLDTTIALSNALGVTLN 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + + + + L + A ++ Sbjct: 62 ELDNIINTITNSDLDAKQLELLELYLTALIR 92 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 112 YAIGARLKSIRKDK--GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 IG L+ IRK K ++Q + K G+ S LS+ E + P + + L Sbjct: 1 MKIGTNLQRIRKAKDPKITQQDLAKATGLSRSYLSDIEHNKYNPSLDTTIALSNALGVTL 60 Query: 170 DWI 172 + + Sbjct: 61 NEL 63 >gi|206974896|ref|ZP_03235811.1| DNA-binding protein [Bacillus cereus H3081.97] gi|206746915|gb|EDZ58307.1| DNA-binding protein [Bacillus cereus H3081.97] Length = 403 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 92 DGEV 95 + + Sbjct: 63 EEDE 66 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLLEE 64 Query: 176 DEVIVPKSIKRAK 188 DE + + I++ + Sbjct: 65 DEGKIVELIQKME 77 >gi|147669788|ref|YP_001214606.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270736|gb|ABQ17728.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 69 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K +R N+ TQ+E+A V E G S S+ A + + ++ + I+ Sbjct: 3 NKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFKTPIEEIF 60 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK +R ++Q E LG+ T+ + E+G+ P ++ A KI + K ++ I+ Sbjct: 1 MQNKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFKTPIEEIF 60 >gi|150015531|ref|YP_001307785.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901996|gb|ABR32829.1| putative transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 436 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A ++L E+G + S+ YL + + +++ Sbjct: 6 LGEKIKRRRKQLNMTLKDLAKD-RITPGQISLVESGRSNPSVDLLEYLADALNTNVEYLM 64 Query: 92 DGEV 95 + E Sbjct: 65 ESEE 68 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K RK M+ + K + +S E GR+ P + + + Sbjct: 1 MEILSLGEKIKRRRKQLNMTLKDLAKD-RITPGQISLVESGRSNPSVDLLEYLADALNTN 59 Query: 169 LDWIYFGDEVIVPK 182 ++++ +E K Sbjct: 60 VEYLMESEESQAEK 73 >gi|315647563|ref|ZP_07900665.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315277002|gb|EFU40343.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 184 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 31/87 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R+ + ++A ++ + E G S SI + N ++SF + Sbjct: 8 LAHNLKSLREQRKLSLDKVAELTGISKTMLGQIERGESSPSITTVWKIANGLKLSFTSLI 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + L R+ Sbjct: 68 HEPYSNTVVVPRDDVQALIEDNGRIRI 94 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + LKS+R+ + +S + +L G+ + L E+G + P I KI K Sbjct: 5 HLILAHNLKSLREQRKLSLDKVAELTGISKTMLGQIERGESSPSITTVWKIANGLKLSFT 64 Query: 171 WIY 173 + Sbjct: 65 SLI 67 >gi|315282068|ref|ZP_07870561.1| ans operon transcriptional repressor, putative [Listeria marthii FSL S4-120] gi|313614286|gb|EFR87937.1| ans operon transcriptional repressor, putative [Listeria marthii FSL S4-120] Length = 131 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 1/81 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + R+ +R+ ++ E A S +E G+ + + Y++S Sbjct: 1 MPKLSNRLTLLREKQGWSKAETARRLGLAAPSTYGNWEYGIREPDLEMVTQIATLYDVSV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKR 108 D++ + + ++ Sbjct: 61 DYLLGQQSVPMYVPSELQNEK 81 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ +G S+ E + LG+ ST N+E G P+++ +I + +D++ Sbjct: 6 NRLTLLREKQGWSKAETARRLGLAAPSTYGNWEYGIREPDLEMVTQIATLYDVSVDYLLG 65 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKK 198 V + + K+ K Sbjct: 66 QQSVPMYVPSELQNEKDIGKRMTK 89 >gi|295108110|emb|CBL22063.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 118 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 42/108 (38%), Gaps = 4/108 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK + TQ+E+A + + E G + S L +S D + Sbjct: 9 LGQKMREARKKKDLTQQELADLNHVSVKQIASIEKGQINPSYLILKALAKVLPLSLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 + ++ N+ ++ + + ++ +Q +L + Sbjct: 69 N--PNVSPEDEGANQMKMLYCSCPSEIRE--TLLHHTQETAKELTELS 112 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK K ++Q E L + +++ E+G+ P + + +V L Sbjct: 5 DLTALGQKMREARKKKDLTQQELADLNHVSVKQIASIEKGQINPSYLILKALAKVLPLSL 64 Query: 170 DWIYFGDEVIVPKSIKRAKG 189 D + + + + K Sbjct: 65 DTLINPNVSPEDEGANQMKM 84 >gi|307726443|ref|YP_003909656.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307586968|gb|ADN60365.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 237 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R++ + T + + S ++ ENG+ S + + +I + Sbjct: 38 DLGRRVRAARQSQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVVGLKIEIGEL 97 Query: 91 Y 91 + Sbjct: 98 F 98 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ R+ + ++ +L G+ STLS E G P +KI K + ++ Sbjct: 41 RRVRAARQSQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVVGLKIEIGELF 98 >gi|261344499|ref|ZP_05972143.1| prophage Sa05, DNA-binding protein [Providencia rustigianii DSM 4541] gi|282567408|gb|EFB72943.1| prophage Sa05, DNA-binding protein [Providencia rustigianii DSM 4541] Length = 89 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 28/78 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK + +A G E +E G SI N + IS + + Sbjct: 11 IGNKIKLLRKEKGLSLIAVAKGVGISEQQQLRYERGNNRISIDRLKQYANYFNISLNQFF 70 Query: 92 DGEVIDRRYEDVTNKKRL 109 ++ K L Sbjct: 71 SFNENEKEKIKYEVNKTL 88 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K +RK+KG+S I K +G+ YE+G I ++ L+ + Sbjct: 13 NKIKLLRKEKGLSLIAVAKGVGISEQQQLRYERGNNRISIDRLKQYANYFNISLNQFFSF 72 Query: 176 DEVIVPK 182 +E K Sbjct: 73 NENEKEK 79 >gi|255282154|ref|ZP_05346709.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255267102|gb|EET60307.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 180 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V RIK +RK TQ+E ++V L ENG + S + + E+ + +W+ Sbjct: 2 NVNERIKKVRKTLELTQQEFGERIGIKRNSVALIENGRNT-SDQTIFAICREFNVREEWL 60 Query: 91 YDGEVIDRRYEDVTNKKRL 109 +G + T L Sbjct: 61 REGTGEMFKAAPNTALDAL 79 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K +RK ++Q EFG+ +G+ ++++ E GR + I + +W Sbjct: 1 MNVNERIKKVRKTLELTQQEFGERIGIKRNSVALIENGRNT-SDQTIFAICREFNVREEW 59 Query: 172 IYFGDEVIVP 181 + G + Sbjct: 60 LREGTGEMFK 69 >gi|297201083|ref|ZP_06918480.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|197712131|gb|EDY56165.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 448 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R TQK++A A + ++ E+G S +L + + F+ + Sbjct: 10 IGRRVQQLRVERGLTQKQLAEPA-YTPAYISTLESGRVRPSDDALRHLADRLGVGFEELA 68 Query: 92 DGEVID 97 G Sbjct: 69 TGRPAR 74 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 DP IG R++ +R ++G++Q + + + +S E GR P R + Sbjct: 6 DPGIIGRRVQQLRVERGLTQKQLAEPAY-TPAYISTLESGRVRPSDDALRHLADRLGVGF 64 Query: 170 DWIYFG 175 + + G Sbjct: 65 EELATG 70 >gi|217959269|ref|YP_002337817.1| DNA-binding protein [Bacillus cereus AH187] gi|217068137|gb|ACJ82387.1| DNA-binding protein [Bacillus cereus AH187] Length = 403 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 92 DGEV 95 + + Sbjct: 63 EEDE 66 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLLEE 64 Query: 176 DEVIVPKSIKRAK 188 DE + + I++ + Sbjct: 65 DEGKIVELIQKME 77 >gi|23578000|ref|NP_702947.1| putative transcription regulatory protein [Corynebacterium efficiens YS-314] gi|259506151|ref|ZP_05749053.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|23494826|dbj|BAC19789.1| putative transcription regulatory protein [Corynebacterium efficiens YS-314] gi|259166272|gb|EEW50826.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 81 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +TP+ ++ +G R+++ RK +Q+E+A + + ++L E G + S+ L + Sbjct: 1 MTPD-KKILIQLGDRLREARKQAKLSQEEVAHLSGLHRTYISLVERGGRNISVLNLLSIT 59 Query: 81 NEYEISFDWIYDGEVIDRRYED 102 + I G + R Sbjct: 60 GVLGVDVGDIVSGLTREPRLNP 81 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ RK +SQ E L G+ + +S E+G + I V + I G Sbjct: 15 LREARKQAKLSQEEVAHLSGLHRTYISLVERGGRNISVLNLLSITGVLGVDVGDIVSG 72 >gi|295110625|emb|CBL24578.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 74 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 31/70 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ +R+ N+ +Q+++A + + + +E G + + L Y + ++I Sbjct: 5 NRIRSLREDNDYSQEDIASYLHIGQRTYSDYERGKTRIPLDSMIMLAEFYNVDMNYICCL 64 Query: 94 EVIDRRYEDV 103 ++ + Sbjct: 65 TDQKNKFPEK 74 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R++S+R+D SQ + L + T S+YE+G+T + + + +++ Sbjct: 1 MDYLNRIRSLREDNDYSQEDIASYLHIGQRTYSDYERGKTRIPLDSMIMLAEFYNVDMNY 60 Query: 172 I 172 I Sbjct: 61 I 61 >gi|260587029|ref|ZP_05852942.1| transcriptional regulator [Blautia hansenii DSM 20583] gi|331086463|ref|ZP_08335542.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium 9_1_43BFAA] gi|260542519|gb|EEX23088.1| transcriptional regulator [Blautia hansenii DSM 20583] gi|330410521|gb|EGG89949.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 143 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ R TQKE+AI + ESA+ +E G S + N +IS Sbjct: 3 VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP---- 58 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 V+ L L + R + G+ Q Sbjct: 59 YAMSDPNFDTYVSVMHALFALEDQYGLHAYRDESGVPQ 96 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +G +++ R D+G +Q E + G+ S + NYE G P + KI K Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP 58 >gi|197103371|ref|YP_002128749.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] gi|196480647|gb|ACG80174.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] Length = 120 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 EI + K VG I+ R+ TQ +A E + + E G + S R L Sbjct: 10 GEIVRLQKSVGRAIRMHRERVGLTQAALAEAVGLTEQYIGVVERGARAPSFRTLEALART 69 Query: 83 YEISFDWIYDG 93 + + Sbjct: 70 LKTPVRDFFPH 80 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R+ G++Q + +G+ + E+G P + + + K + + Sbjct: 23 IRMHRERVGLTQAALAEAVGLTEQYIGVVERGARAPSFRTLEALARTLKTPVRDFF 78 >gi|89054537|ref|YP_509988.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864086|gb|ABD54963.1| transcriptional regulator, XRE family with cupin sensor [Jannaschia sp. CCS1] Length = 205 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 22/62 (35%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G I+ RK + T + + A ++ E G + S+ + + ++ Sbjct: 10 PALGALIRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLAQIAQGLSVELEY 69 Query: 90 IY 91 Sbjct: 70 FI 71 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + K + A+GA ++ RK ++ G+ LS E+G+ P + +I Sbjct: 1 MARPKSNNDPALGALIRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLAQIA 60 Query: 163 QVTKKHLDWIY 173 Q L++ Sbjct: 61 QGLSVELEYFI 71 >gi|230647|pdb|2OR1|L Chain L, Recognition Of A Dna Operator By The Repressor Of Phage 434. A View At High Resolution gi|230648|pdb|2OR1|R Chain R, Recognition Of A Dna Operator By The Repressor Of Phage 434. A View At High Resolution gi|494439|pdb|1PER|L Chain L, The Complex Between Phage 434 Repression Dna-Binding Domain And Operator Site Or3: Structural Differences Between Consensus And Non-Consensus Half-Sites gi|494440|pdb|1PER|R Chain R, The Complex Between Phage 434 Repression Dna-Binding Domain And Operator Site Or3: Structural Differences Between Consensus And Non-Consensus Half-Sites gi|494569|pdb|1RPE|L Chain L, The Phage 434 Or2R1-69 Complex At 2.5 Angstroms Resolution gi|494570|pdb|1RPE|R Chain R, The Phage 434 Or2R1-69 Complex At 2.5 Angstroms Resolution gi|157833619|pdb|1R69|A Chain A, Structure Of The Amino-Terminal Domain Of Phage 434 Repressor At 2.0 Angstroms Resolution Length = 69 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+K R Q E+A + ++ ENG R+ L + +S DW+ Sbjct: 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 60 Query: 92 DGEVIDR 98 +G Sbjct: 61 NGTSDSN 67 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +I +R+KS R G++Q E + +G ++ E G+T + ++ +DW+ Sbjct: 1 SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWL 59 Query: 173 YFG 175 G Sbjct: 60 LNG 62 >gi|84684774|ref|ZP_01012674.1| hypothetical protein 1099457000245_RB2654_02659 [Maritimibacter alkaliphilus HTCC2654] gi|84667109|gb|EAQ13579.1| hypothetical protein RB2654_02659 [Rhodobacterales bacterium HTCC2654] Length = 109 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDW 89 ++G R+ +R+++N++ +++A ++ V E G + S L + Y +S D Sbjct: 2 EIGERLMRLRQSSNQSLQQVADAVGVSKAHVWELEKGRSRNPSFELVRKLASHYGVSIDV 61 Query: 90 IYDGEVIDRRYEDVTNKKRLD 110 + + + D Sbjct: 62 LTGTAPEPAPEDIKVGRMHRD 82 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLD 170 IG RL +R+ S + +G+ + + E+GR+ P + RK+ +D Sbjct: 1 MEIGERLMRLRQSSNQSLQQVADAVGVSKAHVWELEKGRSRNPSFELVRKLASHYGVSID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQS-SKKSKKDK 200 + P+ IK + ++ SK+D+ Sbjct: 61 VLTGTAPEPAPEDIKVGRMHRDLESLSKRDR 91 >gi|90425389|ref|YP_533759.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107403|gb|ABD89440.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 84 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 29/80 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG +RK + TQ+ A + + V+ E G + ++ +L +S Sbjct: 4 RKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHV 63 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 + + +++ Sbjct: 64 DLIQPDEEAAGERSKAARRK 83 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK+K +Q F ++ G +S E+G+ P + + + DE Sbjct: 13 RLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHVDLIQPDEEA 72 Query: 180 VPKSIKRAK 188 + K A+ Sbjct: 73 AGERSKAAR 81 >gi|329729091|gb|EGG65502.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] Length = 175 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK IRK TQ E+A +S ++ EN + I+ + + +S ++ Sbjct: 2 NIGDNIKKIRKEKKVTQSELASSLKISQSYLSDLENNRKNLGIKTIEKIAKKLNVSVAYL 61 Query: 91 YDGEV 95 G Sbjct: 62 TSGNK 66 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 43/93 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K IRK+K ++Q E L + S LS+ E R IK KI + + + Sbjct: 1 MNIGDNIKKIRKEKKVTQSELASSLKISQSYLSDLENNRKNLGIKTIEKIAKKLNVSVAY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + G++++ + S + K +K ++N Sbjct: 61 LTSGNKMLSDLTEDEINEQFSELRFKLNKDNTN 93 >gi|284036657|ref|YP_003386587.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283815950|gb|ADB37788.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 402 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V I+ +RK N TQ++ + N S + +E G + + + + + + + + Sbjct: 4 VSDNIRYLRKLNGLTQEQFSRKINIKRSLLGAYEEGRANPNGQNIQAIAKAFNTTVELLT 63 Query: 92 DGEVIDRRYED 102 ++ R Sbjct: 64 RQDLRKLRETP 74 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ +RK G++Q +F + + + S L YE+GR P + + I + ++ + Sbjct: 7 NIRYLRKLNGLTQEQFSRKINIKRSLLGAYEEGRANPNGQNIQAIAKAFNTTVELL 62 >gi|170016676|ref|YP_001727595.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803533|gb|ACA82151.1| Transcriptional regulator [Leuconostoc citreum KM20] Length = 123 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 RIK +RK TQ E+A + A+ +E + S+ + + D++ Sbjct: 6 DRIKLLRKQKQLTQSELANIISASRMAIANYETNRNTPSLGMLSLIAEALNTTTDYL 62 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 R+K +RK K ++Q E ++ ++NYE R P + I + D Sbjct: 1 MSKTADRIKLLRKQKQLTQSELANIISASRMAIANYETNRNTPSLGMLSLIAEALNTTTD 60 Query: 171 WI 172 ++ Sbjct: 61 YL 62 >gi|168483951|ref|ZP_02708903.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|172042755|gb|EDT50801.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|332201874|gb|EGJ15944.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 69 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R + ++Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MAKNLKLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 >gi|167771942|ref|ZP_02443995.1| hypothetical protein ANACOL_03315 [Anaerotruncus colihominis DSM 17241] gi|167665740|gb|EDS09870.1| hypothetical protein ANACOL_03315 [Anaerotruncus colihominis DSM 17241] Length = 120 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++RKA + TQ+E A + + +E G + E+ ++ W+ G Sbjct: 3 KRIKELRKALHFTQQEFADRIGIKRNTIANYETGRNDPIDAVISLICKEFNVNERWLRTG 62 Query: 94 EVIDRRYED 102 E Sbjct: 63 EGEMFLQMT 71 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 35/75 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +RK +Q EF +G+ +T++NYE GR P I + + W+ Sbjct: 1 MYKRIKELRKALHFTQQEFADRIGIKRNTIANYETGRNDPIDAVISLICKEFNVNERWLR 60 Query: 174 FGDEVIVPKSIKRAK 188 G+ + + + + Sbjct: 61 TGEGEMFLQMTRDEE 75 >gi|108759575|ref|YP_630140.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108463455|gb|ABF88640.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 124 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R Q E+A N +A + E G+ S+ L + + + Sbjct: 24 LGEALREARLRAGLQQTEVATLINISRNAYSRLERGLMLPSVPTLYRLCTAVCTTPNELL 83 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI--RKDKGMSQIEFGKL 135 Y + A+ R++ + R+ + Q+ G+ Sbjct: 84 G-----FSYSLPPGTSAIAKDALRRRVRQLNGRQALALIQLLSGER 124 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 29/82 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ R G+ Q E L+ + + S E+G +P + ++ + + Sbjct: 26 EALREARLRAGLQQTEVATLINISRNAYSRLERGLMLPSVPTLYRLCTAVCTTPNELLGF 85 Query: 176 DEVIVPKSIKRAKGNQSSKKSK 197 + P + AK + + Sbjct: 86 SYSLPPGTSAIAKDALRRRVRQ 107 >gi|11499382|ref|NP_070621.1| repressor protein [Archaeoglobus fulgidus DSM 4304] gi|3219980|sp|O28481|Y1793_ARCFU RecName: Full=Uncharacterized HTH-type transcriptional regulator AF_1793 gi|2648767|gb|AAB89470.1| repressor protein [Archaeoglobus fulgidus DSM 4304] Length = 70 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 35/67 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ R GM+Q E K +G+ T+ E+G+ P ++ A KI +V ++ ++ Sbjct: 1 MRTRIREFRAKYGMTQEELAKKVGVRRETIVFLEKGKYNPSLRLAYKIARVFNARIEDLF 60 Query: 174 FGDEVIV 180 D+ + Sbjct: 61 IFDDEEL 67 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI++ R TQ+E+A + E G + S+R A + + + ++ Sbjct: 4 RIREFRAKYGMTQEELAKKVGVRRETIVFLEKGKYNPSLRLAYKIARVFNARIEDLF 60 >gi|328554201|gb|AEB24693.1| transcriptional regulator SinR [Bacillus amyloliquefaciens TA208] Length = 111 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 4/108 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK RK + E+A A +S ++ E + SI++ + ++S + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 Query: 91 YDGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 D + D + + K D G K R+ + + Sbjct: 62 LDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLEYQKWRKAQK 109 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K RK+KG S E + G+ S LS+ E+ +T P I+ K+ V + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|319441835|ref|ZP_07990991.1| hypothetical protein CvarD4_08738 [Corynebacterium variabile DSM 44702] Length = 78 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N D ++ R+ + +SQ E + +G+ T++N E+G P + A I + Sbjct: 2 NDTSKDAAETTNMVRRWRRWEELSQAELAERVGVSRQTIANIEKGNYSPSVHLALAICRE 61 Query: 165 TKKHLDWIYFGDEVIV 180 + ++ I+ ++ Sbjct: 62 LGRTVEQIFGDEQEQE 77 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R+ +Q E+A + E G S S+ AL + E + + I+ E Sbjct: 15 VRRWRRWEELSQAELAERVGVSRQTIANIEKGNYSPSVHLALAICRELGRTVEQIFGDEQ 74 Query: 96 I 96 Sbjct: 75 E 75 >gi|308187448|ref|YP_003931579.1| hypothetical protein Pvag_1947 [Pantoea vagans C9-1] gi|308057958|gb|ADO10130.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 185 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ IR+ +Q+ +A A SA++ E S ++ L Y +S + Sbjct: 9 GRRLAQIRQTMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ G+SQ +L G+ +S +S EQ + P + +K+ +V L Sbjct: 6 LAPGRRLAQIRQTMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVI-VPKSIKRA 187 + + PK I RA Sbjct: 66 FFSEPKPHAEPKVIVRA 82 >gi|308176372|ref|YP_003915778.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743835|emb|CBT74807.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 187 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 6/145 (4%) Query: 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 TL + P ++G R++ +R+ T ++A + + ++ E + S S+ Sbjct: 2 KTLPVEPTGAAI--NIGARLRGVRQTQRMTIDQVAELSGLTKGFLSRVERDLTSPSVSTL 59 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 L L I +++ + + L I +L + R +K + Q+ + Sbjct: 60 LRLCEVLSIEVGTLFEVPETKLVRLEQAPRVSLGGDGITEQLVTPRSEKRV-QMIRAE-- 116 Query: 137 GMPNSTLSNYEQGRTIPEIKPARKI 161 + E E++ I Sbjct: 117 -IAPKGTGEAELYSVDCELEVLHVI 140 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ARL+ +R+ + M+ + +L G+ LS E+ T P + ++ +V + ++ Sbjct: 17 ARLRGVRQTQRMTIDQVAELSGLTKGFLSRVERDLTSPSVSTLLRLCEVLSIEVGTLF-- 74 Query: 176 DEVIVPKSIKRAKGNQSS 193 EV K ++ + + S Sbjct: 75 -EVPETKLVRLEQAPRVS 91 >gi|218463407|ref|ZP_03503498.1| MerR family transcriptional regulator [Rhizobium etli Kim 5] gi|218663344|ref|ZP_03519274.1| MerR family transcriptional regulator [Rhizobium etli IE4771] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+R++ +R A+ +Q+E+A S ++L E+ + S+ + + I Sbjct: 4 DIGSRLRHLRLAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEF 63 Query: 91 YDGEVIDRRY 100 + E + Sbjct: 64 FAFEPERPKK 73 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RL+ +R +SQ E K G+PNST+S E + P + ++I L + Sbjct: 7 SRLRHLRLAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFFAF 66 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 + K+ A+ K K Sbjct: 67 EPERPKKAFYAAEELVEIGKGAISYK 92 >gi|150400256|ref|YP_001324023.1| XRE family transcriptional regulator [Methanococcus vannielii SB] gi|150012959|gb|ABR55411.1| transcriptional regulator, XRE family [Methanococcus vannielii SB] Length = 73 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R ++Q K L + T+ E+ + P ++ A KI +V ++ I+ Sbjct: 1 MKNRIKILRAVHNLTQEMLAKKLNVTRQTIIAIEREKYDPSLELAFKIAEVFNVKIEDIF 60 Query: 174 FGDEVIVPKSIKR 186 + ++ Sbjct: 61 IYENTNFTSFKEK 73 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +R +N TQ+ +A N + E S+ A + + + + I+ Sbjct: 3 NRIKILRAVHNLTQEMLAKKLNVTRQTIIAIEREKYDPSLELAFKIAEVFNVKIEDIFIY 62 Query: 94 EVIDRRYEDVT 104 E + Sbjct: 63 ENTNFTSFKEK 73 >gi|15801392|ref|NP_287409.1| hypothetical protein Z1932 [Escherichia coli O157:H7 EDL933] gi|12514864|gb|AAG56021.1|AE005334_8 orf; hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 111 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ + +RK+ N T E+A + ++ ++ E G S S L N I+ + Sbjct: 19 DIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANALNITLSKL 78 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + ++ + Sbjct: 79 FAELEMQQNSLVLLADQQQHWIDEETGI 106 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 37/97 (38%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + R D K ++ I L +RK + ++ E + G+ + +S E+G + P Sbjct: 1 MKEGRRMDKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPS 60 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 ++ L ++ E+ + A Q Sbjct: 61 ATILSRLANALNITLSKLFAELEMQQNSLVLLADQQQ 97 >gi|86559618|ref|YP_473438.1| LexA repressor [Clostridium perfringens] gi|86475890|dbj|BAE79065.1| LexA repressor [Clostridium perfringens] Length = 330 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RK N +Q E+A + + +E +I + L S D + Sbjct: 8 NLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNRSIDSL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 D+ N I +L Sbjct: 68 LGLNHSTENTNDLNNSDLSKKIFILNKL 95 >gi|37678457|ref|NP_933066.1| hypothetical protein VV0273 [Vibrio vulnificus YJ016] gi|37197197|dbj|BAC93037.1| hypothetical protein [Vibrio vulnificus YJ016] Length = 350 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG R+K R G+S G+ +G+ + + YE +++P K+ ++ Sbjct: 1 MIGERIKRARAAAGLSMQALGEQVGISANMVKKYEHDQSMPSSGVLLKLATALSVRTEYF 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + +V + + R K + S+K KK + Sbjct: 61 FRPAQVTLGEVEYRKKASASAKLLKKIESD 90 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 22/61 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R A + + + + V +E+ S L L + ++ + Sbjct: 2 IGERIKRARAAAGLSMQALGEQVGISANMVKKYEHDQSMPSSGVLLKLATALSVRTEYFF 61 Query: 92 D 92 Sbjct: 62 R 62 >gi|28379037|ref|NP_785929.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1] gi|28271875|emb|CAD64780.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1] Length = 188 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +IK++R+ +Q E+A N +++L+E G I + + + +I Sbjct: 2 NKIKELRQYMGLSQAELAEKLNVTRQSISLYEKGQRVPRINVLKNMEAIFGVPISYI 58 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 32/58 (55%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++K +R+ G+SQ E + L + ++S YE+G+ +P I + ++ + + +I Sbjct: 1 MNKIKELRQYMGLSQAELAEKLNVTRQSISLYEKGQRVPRINVLKNMEAIFGVPISYI 58 >gi|332653437|ref|ZP_08419182.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518583|gb|EGJ48186.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 193 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V + R+A T A S + E G + +I + N Y++SF + Sbjct: 19 VAKNARQAREAKKLTLDGAAAATGVSRSMLAQIEKGEVNPTISVLWKIANGYKVSFTSLV 78 Query: 92 DGEVI 96 + Sbjct: 79 EDRQP 83 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + R+ K ++ G+ S L+ E+G P I KI K Sbjct: 24 RQAREAKKLTLDGAAAATGVSRSMLAQIEKGEVNPTISVLWKIANGYKVS 73 >gi|323495755|ref|ZP_08100825.1| hypothetical protein VISI1226_05144 [Vibrio sinaloensis DSM 21326] gi|323319222|gb|EGA72163.1| hypothetical protein VISI1226_05144 [Vibrio sinaloensis DSM 21326] Length = 506 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 51/211 (24%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCST 71 ++++ + + +GT+I+++RK N+ T ++++ S +++ E G Sbjct: 1 MMLSKSLIRQSHFLGTKIRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVP 60 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKK----------------RLDPYAIG 115 SI + ++ W D E + + AI Sbjct: 61 SIDMLEVIAEVFQKDPAWFLDDEPEQTDITPDKGNRGGISGMALEPSFLFSNDILQIAIP 120 Query: 116 ARLKS------------IRKDKGMSQ------IEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 L IR + +Q + +G+ + Sbjct: 121 EMLSQTGITGRQFAHLLIRAHQESNQNHFPDLERAAEEIGLKR----------LNLSAED 170 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKSIKRAK 188 I + + WI + IV + AK Sbjct: 171 LMDIARSMGLTIRWISRPPQDIVDELGVSAK 201 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ +P I I +V Sbjct: 12 HFLGTKIRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVPSIDMLEVIAEV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K W D+ I KGN+ Sbjct: 72 FQKDPAWFL--DDEPEQTDITPDKGNR 96 >gi|269968531|ref|ZP_06182537.1| hypothetical protein VMC_39670 [Vibrio alginolyticus 40B] gi|269826866|gb|EEZ81194.1| hypothetical protein VMC_39670 [Vibrio alginolyticus 40B] Length = 210 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 25/85 (29%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + V RIK+ RK + ++ A + + E G + SI L Sbjct: 24 DADFINQAVAARIKEHRKRLKLSLDALSKRAGISKGMLVEVEKGAANPSISTLCKLSAAL 83 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKR 108 IS I + Sbjct: 84 GISVADIVNVASNPTVNIIDKEDIP 108 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 +I + ++ + T+ ++ A+ AR+K RK +S K G+ L E+ Sbjct: 8 YITMTKKVNISTDSGTDADFINQ-AVAARIKEHRKRLKLSLDALSKRAGISKGMLVEVEK 66 Query: 149 GRTIPEIKPARKIKQVTKKHLDWIY 173 G P I K+ + I Sbjct: 67 GAANPSISTLCKLSAALGISVADIV 91 >gi|262191222|ref|ZP_06049420.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae CT 5369-93] gi|262032888|gb|EEY51428.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae CT 5369-93] Length = 181 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K++RK+ + A ++ + E G S +I + + E SF Sbjct: 6 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 65 Query: 88 DWIYDGEVI 96 + + Sbjct: 66 SAFFANDPQ 74 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK++RK +G+S +L G+ + L E+G + P I KI + Sbjct: 5 MFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 64 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 65 FSAFFANDPQLLSSE 79 >gi|315500763|ref|YP_004089564.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315418775|gb|ADU15413.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 68 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 24/61 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +K +R+ TQ+ + + + ++ E G + +I + + + + Sbjct: 2 VGENLKRLRQEKGLTQEVLESRSGLSQQYLSGLERGKRNPTIITVYEISQALGVHYLELL 61 Query: 92 D 92 Sbjct: 62 R 62 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G LK +R++KG++Q G+ LS E+G+ P I +I Q H + Sbjct: 1 MVGENLKRLRQEKGLTQEVLESRSGLSQQYLSGLERGKRNPTIITVYEISQALGVHYLEL 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|218673348|ref|ZP_03523017.1| putative transcriptional regulator [Rhizobium etli GR56] Length = 125 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 6/98 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW- 89 G ++ +R +QKEMA N + ++ E+G + + + I +D Sbjct: 4 FGEAVRRLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIWDEA 63 Query: 90 ----IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + R D + + IR+ Sbjct: 64 EELFLLARSSDPRVVIDTSGLPPEYTEFANRLARRIRE 101 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 4/83 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 G ++ +R KG+SQ E + L + + LS E G+ +P ++I Sbjct: 1 MTPFGEAVRRLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIW 60 Query: 168 -HLDWIYFGDEVIVPKSIKRAKG 189 + ++ P+ + G Sbjct: 61 DEAEELFLLARSSDPRVVIDTSG 83 >gi|163869150|ref|YP_001610390.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018837|emb|CAK02395.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 157 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 34/101 (33%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ R+ +Q + + +E G+ S + + + + + Sbjct: 48 VGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPIS-FF 106 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++I ++ + + + LK R + Q Sbjct: 107 YADIITKQQPPHHHDEVISSTEEYLLLKRFRTLTSIKQRAI 147 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 1/86 (1%) Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 +++ +G R E + +D ++ R+ MSQ G LG+ + YE Sbjct: 23 EYLCEGARNRREGEMQSQNLNIDLLVGKK-IRLRRQMLKMSQTTLGHALGVSFQQIQKYE 81 Query: 148 QGRTIPEIKPARKIKQVTKKHLDWIY 173 +G +I + + + Y Sbjct: 82 KGLNRVSAGRLMQISDILNVPISFFY 107 >gi|146311755|ref|YP_001176829.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145318631|gb|ABP60778.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 191 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI+ R++ + E+A A + ++ E S + L + IS + Sbjct: 12 ISARIRLERESRGWSLSELAERAGVSRAMIHKIERSESSPTATLLARLSGAFGISMSTLI 71 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 31/78 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + I AR++ R+ +G S E + G+ + + E+ + P ++ + Sbjct: 9 NHRISARIRLERESRGWSLSELAERAGVSRAMIHKIERSESSPTATLLARLSGAFGISMS 68 Query: 171 WIYFGDEVIVPKSIKRAK 188 + E+ K ++ A Sbjct: 69 TLIARAEMQEGKLLRFAN 86 >gi|29833583|ref|NP_828217.1| transcriptional regulatory protein [Streptomyces avermitilis MA-4680] gi|29610707|dbj|BAC74752.1| putative transcriptional regulatory protein [Streptomyces avermitilis MA-4680] Length = 201 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 24/73 (32%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ + + +K R T +A A + E + SI + + + Sbjct: 13 SDLDLLTQSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSIGTVVKIGDA 72 Query: 83 YEISFDWIYDGEV 95 +S + D E Sbjct: 73 LGVSVTTLLDYEQ 85 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 2/85 (2%) Query: 95 VIDRRYEDVTNKKRLD--PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 + N LD ++ +K R ++G + G+ L EQ RT Sbjct: 1 MNSVIQNIGRNVSDLDLLTQSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTN 60 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDE 177 P I KI + + ++ Sbjct: 61 PSIGTVVKIGDALGVSVTTLLDYEQ 85 >gi|56708846|ref|YP_164887.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680531|gb|AAV97196.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 204 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 2/83 (2%) Query: 11 LKSLQEYTLIITPEIRQYW--KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 ++ +Q ++PE + + +G I+D RK T +E A A S ++ EN Sbjct: 1 MEPVQAEDEGLSPEALEAPDGETLGKMIRDARKDKGLTLEEAARSAAIGRSTLSKIENNQ 60 Query: 69 CSTSIRYALYLRNEYEISFDWIY 91 S L ++ ++ Sbjct: 61 TRPSFDIIRRLMQALDLETPQLF 83 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 31/79 (39%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + D +G ++ RKDKG++ E + + STLS E +T P Sbjct: 5 QAEDEGLSPEALEAPDGETLGKMIRDARKDKGLTLEEAARSAAIGRSTLSKIENNQTRPS 64 Query: 155 IKPARKIKQVTKKHLDWIY 173 R++ Q ++ Sbjct: 65 FDIIRRLMQALDLETPQLF 83 >gi|262273101|ref|ZP_06050918.1| hypothetical transcriptional regulator [Grimontia hollisae CIP 101886] gi|262222857|gb|EEY74165.1| hypothetical transcriptional regulator [Grimontia hollisae CIP 101886] Length = 121 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R++ R+ + ++Q+E + L + T + E G+T P++ I VT + L+W Sbjct: 7 HVAQRIREAREYRDITQVEMAQHLDVARQTYLDIESGKTEPKVSSLATIADVTGRPLNWF 66 Query: 173 YFGD 176 FG+ Sbjct: 67 LFGE 70 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 24/68 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V RI++ R+ + TQ EMA + E+G + + + +W Sbjct: 8 VAQRIREAREYRDITQVEMAQHLDVARQTYLDIESGKTEPKVSSLATIADVTGRPLNWFL 67 Query: 92 DGEVIDRR 99 GE Sbjct: 68 FGESTRSD 75 >gi|223984758|ref|ZP_03634870.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM 12042] gi|223963244|gb|EEF67644.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM 12042] Length = 180 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V IK +R+ + +E+A ++ +S + E G + ++ + N ++ FD + Sbjct: 5 VAANIKRLREERKLSMEELAKFSSVSKSMIAQIERGEGNPTLSTLWKISNGLKVPFDSL 63 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A +K +R+++ +S E K + S ++ E+G P + KI K D + Sbjct: 7 ANIKRLREERKLSMEELAKFSSVSKSMIAQIERGEGNPTLSTLWKISNGLKVPFDSL 63 >gi|189423556|ref|YP_001950733.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189419815|gb|ACD94213.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 197 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 14/170 (8%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 I +I+++ +G +I+ R+ T +E++ + ++ EN + L + Sbjct: 4 IKAQIKEFR--IGEKIRGQRQQRRLTLQELSELTGLSKPLLSQIENEQVVPPLATLLKIS 61 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR------KDKGMSQIEFG- 133 ++ + ++ E +R A R GM Q Sbjct: 62 RGLKVDIHFFFEDEGNRQRLVLTRGDDLRPDLQRQAVNAENRPYTYHSLAHGMRQKHMEP 121 Query: 134 KLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 L+ + NST + R E + V + +D +++G+E+ KS Sbjct: 122 FLVEVKNSTWDDKLFFRHEGEEEFLY----VLEGEID-LHYGNEIHRVKS 166 >gi|167903989|ref|ZP_02491194.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] Length = 195 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 30/85 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E + + L N +S ++ Sbjct: 7 IARRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLF 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + R ++ + A Sbjct: 67 EDDRAARAASPLSRATEQPVWKDPA 91 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ L ++ Sbjct: 9 RRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFED 68 Query: 176 D 176 D Sbjct: 69 D 69 >gi|160892514|ref|ZP_02073304.1| hypothetical protein CLOL250_00043 [Clostridium sp. L2-50] gi|156865555|gb|EDO58986.1| hypothetical protein CLOL250_00043 [Clostridium sp. L2-50] Length = 138 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++G+ + +RK+ + +E A +SA + +E G I+ Y N Y I+ Sbjct: 5 IRTNIGSALLSLRKSKTLSMREAAEELKISQSAYSQYERGSSIPDIKTIFYASNYYHINI 64 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 ++ ID + + L + Sbjct: 65 QFLVFLICIDLASLENIKNENLFQLFTFDNI 95 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +RK K +S E + L + S S YE+G +IP+IK ++ ++ F Sbjct: 16 LRKSKTLSMREAAEELKISQSAYSQYERGSSIPDIKTIFYASNYYHINIQFLVF 69 >gi|62317249|ref|YP_223102.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269230|ref|YP_418521.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189022510|ref|YP_001932251.1| Helix-turn-helix motif [Brucella abortus S19] gi|237816809|ref|ZP_04595801.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|254690756|ref|ZP_05154010.1| Helix-turn-helix motif [Brucella abortus bv. 6 str. 870] gi|254698535|ref|ZP_05160363.1| Helix-turn-helix motif [Brucella abortus bv. 2 str. 86/8/59] gi|254731982|ref|ZP_05190560.1| Helix-turn-helix motif [Brucella abortus bv. 4 str. 292] gi|256255939|ref|ZP_05461475.1| Helix-turn-helix motif [Brucella abortus bv. 9 str. C68] gi|260544487|ref|ZP_05820308.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260756327|ref|ZP_05868675.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759755|ref|ZP_05872103.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762994|ref|ZP_05875326.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882151|ref|ZP_05893765.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297249296|ref|ZP_06932997.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62197442|gb|AAX75741.1| transcriptional regulator, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939504|emb|CAJ12476.1| Helix-turn-helix motif:Cupin domain [Brucella melitensis biovar Abortus 2308] gi|189021084|gb|ACD73805.1| Helix-turn-helix motif [Brucella abortus S19] gi|237787622|gb|EEP61838.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|260097758|gb|EEW81632.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260670073|gb|EEX57013.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673415|gb|EEX60236.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676435|gb|EEX63256.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260871679|gb|EEX78748.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297173165|gb|EFH32529.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R N +Q+E A A S ++L E + S+ + + I Sbjct: 4 DIGGRLRYVRMRQNLSQREFAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEF 63 Query: 91 YDGEVIDRRY 100 + E Sbjct: 64 FALEPDAPHR 73 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ EF K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQREFAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|13474794|ref|NP_106364.1| transcriptional regulatory protein [Mesorhizobium loti MAFF303099] gi|14025550|dbj|BAB52150.1| transcriptional regulatory protein [Mesorhizobium loti MAFF303099] Length = 75 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 25/66 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGT +R+ TQ+++ + + ++ E G + ++ L +S + Sbjct: 10 VGTNFARLRREKGLTQEQVEARSGYSQQYLSSLERGRRNPTVITLFELSQALGVSHVELV 69 Query: 92 DGEVID 97 + Sbjct: 70 KPDEDS 75 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 +R++KG++Q + G LS+ E+GR P + ++ Q + DE Sbjct: 16 RLRREKGLTQEQVEARSGYSQQYLSSLERGRRNPTVITLFELSQALGVSHVELVKPDED 74 >gi|313837698|gb|EFS75412.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA2] gi|314972637|gb|EFT16734.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA3] gi|328907505|gb|EGG27271.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium sp. P08] Length = 508 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG I+D RK + TQ ++A +SA++ E+G + S+ Y + E Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ RK GM+Q + ++L S + E G ++ +I + + + Sbjct: 13 IRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|306838646|ref|ZP_07471482.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306406289|gb|EFM62532.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R N +Q+E+A A S ++L E + S+ + + I Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEF 63 Query: 91 YDGEVIDRRY 100 + E Sbjct: 64 FALEPDAPHR 73 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ E K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|306846135|ref|ZP_07478697.1| XRE family transcriptional regulator [Brucella sp. BO1] gi|306273386|gb|EFM55247.1| XRE family transcriptional regulator [Brucella sp. BO1] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R N +Q+E+A A S ++L E + S+ + + I Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEF 63 Query: 91 YDGEVIDRRY 100 + E Sbjct: 64 FALEPDAPHR 73 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ E K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|296533427|ref|ZP_06896012.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296266247|gb|EFH12287.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 189 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 26/79 (32%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+K R+A + E+A + ++ ++ E S + L + +S + Sbjct: 9 QLAQRLKTEREARGWSLSELAERSGVSKAMISKIERDEVSPTAALLGRLSGAFGLSLSQL 68 Query: 91 YDGEVIDRRYEDVTNKKRL 109 + + Sbjct: 69 LARAEQGAGLLARAAAQPV 87 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK+ R+ +G S E + G+ + +S E+ P ++ L + Sbjct: 12 QRLKTEREARGWSLSELAERSGVSKAMISKIERDEVSPTAALLGRLSGAFGLSLSQLLAR 71 Query: 176 DE 177 E Sbjct: 72 AE 73 >gi|294500383|ref|YP_003564083.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294350320|gb|ADE70649.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 77 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N TQ+++A V+L E G + S++ L + E + D ++ Sbjct: 11 IKNNVKVVRVKMNLTQQQLADKVGITRQTVSLIEKGQYNPSLKLCLQICYVVEETLDELF 70 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +K +R ++Q + +G+ T+S E+G+ P +K +I V ++ LD Sbjct: 9 LFIKNNVKVVRVKMNLTQQQLADKVGITRQTVSLIEKGQYNPSLKLCLQICYVVEETLDE 68 Query: 172 IYFGDEVI 179 +++ D+ + Sbjct: 69 LFWIDKEL 76 >gi|294013139|ref|YP_003546599.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676469|dbj|BAI97987.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 80 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK TQ++++ + + E G + +I+ L L ++ ++ Sbjct: 10 LGDAVRQLRKVRGLTQEDLSGLTELHRNHIGGIERGERNITIKTMLALARALDVQPAELF 69 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G ++ +RK +G++Q + L + + + E+G IK + + Sbjct: 6 DLVPLGDAVRQLRKVRGLTQEDLSGLTELHRNHIGGIERGERNITIKTMLALARALDVQP 65 Query: 170 DWIY 173 ++ Sbjct: 66 AELF 69 >gi|289425420|ref|ZP_06427197.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] gi|289154398|gb|EFD03086.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] Length = 508 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG I+D RK + TQ ++A +SA++ E+G + S+ Y + E Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ RK GM+Q + ++L S + E G ++ +I + + + Sbjct: 13 IRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|261251082|ref|ZP_05943656.1| transcriptional regulator YidN, Cro/CI family [Vibrio orientalis CIP 102891] gi|260937955|gb|EEX93943.1| transcriptional regulator YidN, Cro/CI family [Vibrio orientalis CIP 102891] Length = 188 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 28/83 (33%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q VG +K +R + + A ++ + E G S ++ + + +E+S Sbjct: 2 QKEIKVGDNLKRLRSDKGWSLDKAAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVS 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRL 109 F + + L Sbjct: 62 FSSFITTCSNNELTSLFRDANEL 84 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LK +R DKG S + K G+ + L E+G + P + +I + Sbjct: 10 NLKRLRSDKGWSLDKAAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVSFSSFIT 67 >gi|300780095|ref|ZP_07089951.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300534205|gb|EFK55264.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 73 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D ++ R+ +SQ E + +G+ T++N E+G P + A I + K + Sbjct: 4 DIDPHPNMVRQWRRWHELSQAELAQRVGVSRQTVANIEKGNYSPSVHLALDICRELGKTV 63 Query: 170 DWIYFGDE 177 + ++ GD+ Sbjct: 64 EEVF-GDQ 70 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R+ + +Q E+A V E G S S+ AL + E + + ++ + Sbjct: 12 VRQWRRWHELSQAELAQRVGVSRQTVANIEKGNYSPSVHLALDICRELGKTVEEVFGDQQ 71 Query: 96 ID 97 Sbjct: 72 RS 73 >gi|256111164|ref|ZP_05452200.1| hypothetical protein Bmelb3E_01001 [Brucella melitensis bv. 3 str. Ether] gi|265992675|ref|ZP_06105232.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|262763545|gb|EEZ09577.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R N +Q+E+A A S ++L E + S+ + + I Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEF 63 Query: 91 YDGEVIDRRY 100 + E Sbjct: 64 FALEPDAPHR 73 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ E K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|254712684|ref|ZP_05174495.1| hypothetical protein BcetM6_04806 [Brucella ceti M644/93/1] gi|254715754|ref|ZP_05177565.1| hypothetical protein BcetM_04816 [Brucella ceti M13/05/1] gi|256015686|ref|YP_003105695.1| transcriptional regulator, putative [Brucella microti CCM 4915] gi|261217515|ref|ZP_05931796.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261320390|ref|ZP_05959587.1| transcriptional regulator [Brucella ceti M644/93/1] gi|255998346|gb|ACU50033.1| transcriptional regulator, putative [Brucella microti CCM 4915] gi|260922604|gb|EEX89172.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261293080|gb|EEX96576.1| transcriptional regulator [Brucella ceti M644/93/1] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R N +Q+E+A A S ++L E + S+ + + I Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEF 63 Query: 91 YDGEVIDRRY 100 + E Sbjct: 64 FALEPDAPHR 73 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ E K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|254705610|ref|ZP_05167438.1| hypothetical protein BpinM_00991 [Brucella pinnipedialis M163/99/10] gi|261313020|ref|ZP_05952217.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261302046|gb|EEY05543.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R N +Q+E+A A S ++L E + S+ + + I Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEF 63 Query: 91 YDGEVIDRRY 100 + E Sbjct: 64 FALEPDAPHR 73 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ E K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|289428534|ref|ZP_06430218.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|295130785|ref|YP_003581448.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] gi|289158228|gb|EFD06447.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|291375959|gb|ADD99813.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] Length = 508 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG I+D RK + TQ ++A +SA++ E+G + S+ Y + E Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ RK GM+Q + ++L S + E G ++ +I + + + Sbjct: 13 IRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|167770416|ref|ZP_02442469.1| hypothetical protein ANACOL_01759 [Anaerotruncus colihominis DSM 17241] gi|167667423|gb|EDS11553.1| hypothetical protein ANACOL_01759 [Anaerotruncus colihominis DSM 17241] Length = 112 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +K +R++ +Q+ +A A +E G L L + +S D + + Sbjct: 3 NLKALRESKGVSQQTVADYLGITRQAYGNYETGKRQADYAALLRLAAFFGVSVDALLQPD 62 Query: 95 VIDRRYE 101 + E Sbjct: 63 PPAQTKE 69 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 32/90 (35%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LK++R+ KG+SQ LG+ NYE G+ + ++ +D + Sbjct: 1 MTNLKALRESKGVSQQTVADYLGITRQAYGNYETGKRQADYAALLRLAAFFGVSVDALLQ 60 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 D K + + + K N Sbjct: 61 PDPPAQTKELAFDDFTYAMYEEGKQLTEEN 90 >gi|163845040|ref|YP_001622695.1| hypothetical protein BSUIS_B0917 [Brucella suis ATCC 23445] gi|163675763|gb|ABY39873.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R N +Q+E+A A S ++L E + S+ + + I Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEF 63 Query: 91 YDGEVIDRRY 100 + E Sbjct: 64 FALEPDAPHR 73 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ E K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|119899345|ref|YP_934558.1| anaerobic benzoate catabolism transcriptional regulator [Azoarcus sp. BH72] gi|119671758|emb|CAL95672.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 304 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ +G R+++IR T+K +A A E + E G + SI ++ ++S Sbjct: 28 EFLMSLGKRVREIRDRRGMTRKLVAREAGVSERHLAHLEAGEGNVSIVLLRHITRALDVS 87 Query: 87 FDWIYDGEVIDRRYED 102 + E D + Sbjct: 88 LIELLAPEAEDTVEKR 103 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G R++ IR +GM++ + G+ L++ E G I R I + L Sbjct: 31 MSLGKRVREIRDRRGMTRKLVAREAGVSERHLAHLEAGEGNVSIVLLRHITRALDVSLIE 90 Query: 172 IYFG--DEVIVPKSIKR 186 + ++ + + I+R Sbjct: 91 LLAPEAEDTVEKRLIRR 107 >gi|50842706|ref|YP_055933.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|50840308|gb|AAT82975.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|332675629|gb|AEE72445.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes 266] Length = 548 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG I+D RK + TQ ++A +SA++ E+G + S+ Y + E Sbjct: 49 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 104 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ RK GM+Q + ++L S + E G ++ +I + + + Sbjct: 53 IRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 104 >gi|28628140|gb|AAO34623.1| unknown [Erwinia chrysanthemi] Length = 119 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +RKA + TQ+ +A A+ + + +E G ++ + L +S D + Sbjct: 15 ARLIQLRKAADLTQQALADRASIHVNQIRRYEAGSAQPTLDALIRLAKVLRVSLDGLVFD 74 Query: 94 E 94 + Sbjct: 75 D 75 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 P ARL +RK ++Q + + + YE G P + ++ +V + LD Sbjct: 10 PMNFPARLIQLRKAADLTQQALADRASIHVNQIRRYEAGSAQPTLDALIRLAKVLRVSLD 69 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + F D P + S +++++ Sbjct: 70 GLVFDDHERGPSDDLALQFEAVSGMPEEERR 100 >gi|17988717|ref|NP_541350.1| MerR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23500652|ref|NP_700092.1| transcriptional regulator [Brucella suis 1330] gi|148558695|ref|YP_001257846.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|225629381|ref|ZP_03787414.1| MerR family transcriptional regulator [Brucella ceti str. Cudo] gi|225686684|ref|YP_002734656.1| hypothetical protein BMEA_B0907 [Brucella melitensis ATCC 23457] gi|254695939|ref|ZP_05157767.1| hypothetical protein Babob3T_15192 [Brucella abortus bv. 3 str. Tulya] gi|254700125|ref|ZP_05161953.1| hypothetical protein Bsuib55_04584 [Brucella suis bv. 5 str. 513] gi|254710842|ref|ZP_05172653.1| hypothetical protein BpinB_11376 [Brucella pinnipedialis B2/94] gi|254720212|ref|ZP_05182023.1| hypothetical protein Bru83_11898 [Brucella sp. 83/13] gi|256029224|ref|ZP_05442838.1| hypothetical protein BpinM2_00940 [Brucella pinnipedialis M292/94/1] gi|256043791|ref|ZP_05446713.1| hypothetical protein Bmelb1R_04819 [Brucella melitensis bv. 1 str. Rev.1] gi|256058912|ref|ZP_05449126.1| hypothetical protein Bneo5_00926 [Brucella neotomae 5K33] gi|256157420|ref|ZP_05455338.1| hypothetical protein BcetM4_00971 [Brucella ceti M490/95/1] gi|256253602|ref|ZP_05459138.1| hypothetical protein BcetB_04769 [Brucella ceti B1/94] gi|256262183|ref|ZP_05464715.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260167682|ref|ZP_05754493.1| hypothetical protein BruF5_04739 [Brucella sp. F5/99] gi|260564976|ref|ZP_05835461.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|261216367|ref|ZP_05930648.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261220739|ref|ZP_05935020.1| transcriptional regulator [Brucella ceti B1/94] gi|261318414|ref|ZP_05957611.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261322848|ref|ZP_05962045.1| transcriptional regulator [Brucella neotomae 5K33] gi|261750617|ref|ZP_05994326.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757118|ref|ZP_06000827.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|265985222|ref|ZP_06097957.1| transcriptional regulator [Brucella sp. 83/13] gi|265986212|ref|ZP_06098769.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265990218|ref|ZP_06102775.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265995908|ref|ZP_06108465.1| transcriptional regulator [Brucella ceti M490/95/1] gi|306841347|ref|ZP_07474056.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|17984528|gb|AAL53614.1| transcriptional regulator, merr family [Brucella melitensis bv. 1 str. 16M] gi|23464297|gb|AAN34097.1| transcriptional regulator, putative [Brucella suis 1330] gi|148369980|gb|ABQ62852.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|225615877|gb|EEH12926.1| MerR family transcriptional regulator [Brucella ceti str. Cudo] gi|225642789|gb|ACO02702.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260152619|gb|EEW87712.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260917974|gb|EEX84835.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919323|gb|EEX85976.1| transcriptional regulator [Brucella ceti B1/94] gi|261297637|gb|EEY01134.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261298828|gb|EEY02325.1| transcriptional regulator [Brucella neotomae 5K33] gi|261737102|gb|EEY25098.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|261740370|gb|EEY28296.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262550205|gb|EEZ06366.1| transcriptional regulator [Brucella ceti M490/95/1] gi|263000887|gb|EEZ13577.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263091879|gb|EEZ16201.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264658409|gb|EEZ28670.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264663814|gb|EEZ34075.1| transcriptional regulator [Brucella sp. 83/13] gi|306288650|gb|EFM59986.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|326411076|gb|ADZ68140.1| MerR family transcriptional regulator [Brucella melitensis M28] gi|326554367|gb|ADZ89006.1| MerR family transcriptional regulator [Brucella melitensis M5-90] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R N +Q+E+A A S ++L E + S+ + + I Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEF 63 Query: 91 YDGEVIDRRY 100 + E Sbjct: 64 FALEPDAPHR 73 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ E K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|83858372|ref|ZP_00951894.1| putative DNA-binding protein [Oceanicaulis alexandrii HTCC2633] gi|83853195|gb|EAP91047.1| putative DNA-binding protein [Oceanicaulis alexandrii HTCC2633] Length = 76 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R +++E+A + E G + +I AL L + D ++ Sbjct: 9 NRVKTYRVDCGLSRQELATRVQVHPQTIGAIERGQFNPTIEVALRLSETLGVGLDALFSR 68 Query: 94 EVI 96 + Sbjct: 69 QGF 71 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K+ R D G+S+ E + + T+ E+G+ P I+ A ++ + LD ++ Sbjct: 7 FQNRVKTYRVDCGLSRQELATRVQVHPQTIGAIERGQFNPTIEVALRLSETLGVGLDALF 66 >gi|291517925|emb|CBK73146.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 97 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G IK+ R + TQKE+A + AV+ +E G I + E IS + Sbjct: 3 NEKIGKLIKNARLSKGYTQKEIANKLGVTDKAVSKWECGKSFPDITMIESISRELGISVN 62 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 + + + K Sbjct: 63 QLVGVADNSKEEAVMLEKNE 82 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +K+ R KG +Q E LG+ + +S +E G++ P+I I + Sbjct: 1 MNNEKIGKLIKNARLSKGYTQKEIANKLGVTDKAVSKWECGKSFPDITMIESISRELGIS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGN 190 ++ + + +++ K Sbjct: 61 VNQLVGVADNSKEEAVMLEKNE 82 >gi|288921266|ref|ZP_06415550.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288347356|gb|EFC81649.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 490 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 3/108 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST-SIRYALYLRNEYEISFDW- 89 +G+ ++ R+A+ TQ+++A +S V+ E+G + I ++ +S + Sbjct: 20 IGSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARNLGLSPEDV 79 Query: 90 -IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + G + DRR E + R +I + Sbjct: 80 GLAPGGLADRRREPPRGSTVEKVAGSQRAWRLTRDHLNHHRISLARAA 127 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDW 171 L++ R+ G++Q + LLG S +S E GR I +I R I + + Sbjct: 24 LRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARNLGLSPED 78 >gi|253578312|ref|ZP_04855584.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850630|gb|EES78588.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 246 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R +E+A +SA+ +E + + L + Y +S D++ Sbjct: 16 IQERLKDLRLNKRLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 75 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + L + A LKS R + + Sbjct: 76 FCRTENMVEINTPLRELHLSD-EMVALLKSGRINNRLLCE 114 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 I RLK +R +K + E + G+ S L +YE+ + LD++ Sbjct: 16 IQERLKDLRLNKRLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 75 Query: 173 YFGDEVIVP 181 + E +V Sbjct: 76 FCRTENMVE 84 >gi|288947737|ref|YP_003445120.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898253|gb|ADC64088.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 273 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 17/126 (13%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGAN--QLESAVNLFENGMCSTSIRYALYLRNEY 83 R+ + +G RI+ RK + ++++ + A+N +E G+ I + L + Sbjct: 155 RRLNRSIGARIRTRRKQLGLSLRKLSERIDGAISSVALNNYEIGLRRPGIEEVMQLSAIF 214 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD----KGMSQIEFGKLLGMP 139 E+S W+ + E ++ R+ +G+ L Sbjct: 215 EVSPAWLLCIDDRPPPDEHER-----------ELIRHFRRTDERGRGLIFQLSAALASNT 263 Query: 140 NSTLSN 145 S+ Sbjct: 264 REQTSD 269 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 AR+++ RK G+S + + + + + L+NYE G P I+ ++ + + W+ Sbjct: 163 ARIRTRRKQLGLSLRKLSERIDGAISSVALNNYEIGLRRPGIEEVMQLSAIFEVSPAWLL 222 Query: 174 FGDEVIVPKSIKR 186 D+ P +R Sbjct: 223 CIDDRPPPDEHER 235 >gi|222095409|ref|YP_002529469.1| DNA-binding protein [Bacillus cereus Q1] gi|221239467|gb|ACM12177.1| DNA-binding protein [Bacillus cereus Q1] Length = 403 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 92 DGEV 95 + + Sbjct: 63 EEDE 66 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLLEE 64 Query: 176 DEVIVPKSIKRAK 188 DE + + I++ + Sbjct: 65 DEGKIVELIQKME 77 >gi|167761483|ref|ZP_02433610.1| hypothetical protein CLOSCI_03893 [Clostridium scindens ATCC 35704] gi|167661149|gb|EDS05279.1| hypothetical protein CLOSCI_03893 [Clostridium scindens ATCC 35704] Length = 80 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++RK Q+E+A + ENG + SI A L + + + I+ Sbjct: 16 NRLEELRKERGIKQEELAAELEVSRQTIGSLENGRYNPSILLAFKLSKYFGLKIEDIFIY 75 Query: 94 EVIDR 98 E ++ Sbjct: 76 EEEEK 80 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL+ +RK++G+ Q E L + T+ + E GR P I A K+ + ++ I Sbjct: 13 FMKNRLEELRKERGIKQEELAAELEVSRQTIGSLENGRYNPSILLAFKLSKYFGLKIEDI 72 Query: 173 YFGDEV 178 + +E Sbjct: 73 FIYEEE 78 >gi|150403019|ref|YP_001330313.1| helix-turn-helix domain-containing protein [Methanococcus maripaludis C7] gi|150034049|gb|ABR66162.1| helix-turn-helix domain protein [Methanococcus maripaludis C7] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 32/85 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +K IRK + + ++ +S + E G + +I L + N + Sbjct: 1 MKDLNDVISKNLKIIRKRKDLSLDALSNITGVSKSMLGQIERGEVNPTISTILKISNGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + E + + + Sbjct: 61 VSFTSLLKNEKPEVDLIPFEDLNPV 85 >gi|317133309|ref|YP_004092623.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315471288|gb|ADU27892.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 132 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI + +A+ ++ A V+ ++ G S R + + + +S D++ G Sbjct: 5 NRIFQLMEAHEMNAAQLTREAGLTVGLVSQWKKGAQKPSSRNLQKIADYFHVSVDYLLTG 64 Query: 94 EV 95 + Sbjct: 65 KD 66 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 27/66 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 R+ + + M+ + + G+ +S +++G P + +KI +D+ Sbjct: 1 MTTINRIFQLMEAHEMNAAQLTREAGLTVGLVSQWKKGAQKPSSRNLQKIADYFHVSVDY 60 Query: 172 IYFGDE 177 + G + Sbjct: 61 LLTGKD 66 >gi|229044173|ref|ZP_04191852.1| hypothetical protein bcere0027_22090 [Bacillus cereus AH676] gi|228725157|gb|EEL76435.1| hypothetical protein bcere0027_22090 [Bacillus cereus AH676] Length = 204 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 20 MEEIQLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKVVLRNDVQVL 104 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LKSIR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFTSLINN 88 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 89 PQPDTKVVLRN 99 >gi|10954734|ref|NP_066669.1| hypothetical protein pRi1724_p089 [Agrobacterium rhizogenes] gi|8918734|dbj|BAA97799.1| riorf88 [Agrobacterium rhizogenes] gi|10567398|dbj|BAB16207.1| riorf88 [Agrobacterium rhizogenes] Length = 169 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RI+ R+ +Q ++A V +E G L + N + Sbjct: 41 EVGARIRTRRRVLGMSQAKLAEALGVTFQQVQKYEKGTNRVGASRLLNVANVLGVPVSSF 100 Query: 91 YDGEVID 97 ++ + D Sbjct: 101 FNSDTRD 107 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR+++ R+ GMSQ + + LG+ + YE+G + V + + Sbjct: 44 ARIRTRRRVLGMSQAKLAEALGVTFQQVQKYEKGTNRVGASRLLNVANVLGVPVSSFFNS 103 Query: 176 D 176 D Sbjct: 104 D 104 >gi|113968668|ref|YP_732461.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|113883352|gb|ABI37404.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-4] Length = 191 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 8/74 (10%), Positives = 25/74 (33%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +K +R + + A+ ++ + E G S +I + + + Sbjct: 1 MQTINSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFN 60 Query: 85 ISFDWIYDGEVIDR 98 S + + Sbjct: 61 TSLSTFLEPTPESQ 74 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A LK +R KG S + G+ + + E+G + P I KI L Sbjct: 10 ATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNTSLSTFL 67 >gi|323706367|ref|ZP_08117931.1| transcriptional regulator, XRE family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534261|gb|EGB24048.1| transcriptional regulator, XRE family [Thermoanaerobacterium xylanolyticum LX-11] Length = 66 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++IRK Q+E+A ++ ENG + SI A + +++ + I+ Sbjct: 3 NRLEEIRKQRGIRQEELADALKVSRQTISSLENGRYNPSIILAFKIARYFDMRIEDIFIY 62 Query: 94 EVID 97 E + Sbjct: 63 EEEE 66 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK +G+ Q E L + T+S+ E GR P I A KI + ++ I+ Sbjct: 1 MKNRLEEIRKQRGIRQEELADALKVSRQTISSLENGRYNPSIILAFKIARYFDMRIEDIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEEE 65 >gi|307131678|ref|YP_003883694.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] gi|306529207|gb|ADM99137.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] Length = 81 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R+ +Q+ +A S + E G + ++ L + + E S + ++ Sbjct: 17 LGQTIRQRREFLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLRIADALEWSLEQLF 76 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R+ G+SQ G+ S + E+G + +I + L+ ++ Sbjct: 19 QTIRQRREFLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLRIADALEWSLEQLF 76 >gi|260101837|ref|ZP_05752074.1| DNA-binding protein [Lactobacillus helveticus DSM 20075] gi|260084352|gb|EEW68472.1| DNA-binding protein [Lactobacillus helveticus DSM 20075] gi|328463661|gb|EGF35254.1| transcriptional regulator [Lactobacillus helveticus MTCC 5463] Length = 66 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ RK K +SQ+E K +G+ T++ E + P ++ + V L+ +++ Sbjct: 1 MNHVREYRKQKKISQMELAKRIGVARQTINLIENDKYNPSLELCLSLAHVLGTDLNSLFW 60 Query: 175 -GDE 177 GDE Sbjct: 61 DGDE 64 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +++ RK +Q E+A +NL EN + S+ L L + + ++ Sbjct: 2 NHVREYRKQKKISQMELAKRIGVARQTINLIENDKYNPSLELCLSLAHVLGTDLNSLF 59 >gi|261208781|ref|ZP_05923218.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565534|ref|ZP_06445981.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294614441|ref|ZP_06694357.1| helix-turn-helix domain protein [Enterococcus faecium E1636] gi|294617957|ref|ZP_06697562.1| helix-turn-helix domain protein [Enterococcus faecium E1679] gi|260077283|gb|EEW65003.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162616|gb|EFD10469.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291592749|gb|EFF24342.1| helix-turn-helix domain protein [Enterococcus faecium E1636] gi|291595766|gb|EFF27054.1| helix-turn-helix domain protein [Enterococcus faecium E1679] Length = 270 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RI+ IR+ + ++ S VN +E G+ + ++ + Sbjct: 6 QAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIGHVTNE 65 Query: 89 WIYDGEVIDRRYEDVTNKK 107 ++ G+ ++ ++ KK Sbjct: 66 YLLYGDQENQYILEMLQKK 84 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D A+G R++ IR++ +S +FGKL+G +P ST++N+E+G +P+ + +I ++ Sbjct: 1 MEIDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIG 60 Query: 166 KKHLDWIYFGDEV 178 +++ +GD+ Sbjct: 61 HVTNEYLLYGDQE 73 >gi|326201209|ref|ZP_08191081.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] gi|325988777|gb|EGD49601.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] Length = 63 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RKA Q++MA+ N + EN + ++ A+ + + + + ++ Sbjct: 3 NNIKQLRKAKGLRQEDMAVSLNVSRQTIIAIENNKYNPTLELAMKMARLLDTTIEELFVL 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK KG+ Q + L + T+ E + P ++ A K+ ++ ++ ++ Sbjct: 1 MKNNIKQLRKAKGLRQEDMAVSLNVSRQTIIAIENNKYNPTLELAMKMARLLDTTIEELF 60 >gi|239996716|ref|ZP_04717240.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii ATCC 27126] Length = 175 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 28/61 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ + ++A GA +S ++ E G + ++ L + ++ F + Sbjct: 9 LGRHLQKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVPFGQLV 68 Query: 92 D 92 Sbjct: 69 Q 69 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF- 174 L+ +R+DKG+S + G+ S LS EQG P + ++ + + Sbjct: 11 RHLQKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVPFGQLVQP 70 Query: 175 -----GDEVIVPKSIKRAKG 189 G++ + + I++ +G Sbjct: 71 LSASVGEKGVEVRLIEQGQG 90 >gi|229096267|ref|ZP_04227240.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] gi|228687227|gb|EEL41132.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] Length = 405 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ ++A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 5 LGAKIKTLRKEKKLTQTDLA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 92 DGEVIDRRYEDVT 104 + + ++ Sbjct: 64 EDDDVEMIELIQQ 76 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K++RK+K ++Q + + S LS E G+ P +K + I + ++ Sbjct: 7 AKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLED 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + + I+ + Q K +K D+ Sbjct: 66 DDVEMIELIQ--QMEQLIKANKYDE 88 >gi|225573403|ref|ZP_03782158.1| hypothetical protein RUMHYD_01595 [Blautia hydrogenotrophica DSM 10507] gi|225039213|gb|EEG49459.1| hypothetical protein RUMHYD_01595 [Blautia hydrogenotrophica DSM 10507] Length = 75 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 +I+P+ Y+ G ++ R+A +Q+E A + E G S +I + Sbjct: 1 MISPDKINYY--FGNNLRKFREAKGCSQEEFAEICKISRAYYGRIERGEHSITIEKCALI 58 Query: 80 RNEYEISFDWIYDG 93 I ++ Sbjct: 59 AQALGIHISVLFTD 72 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y G L+ R+ KG SQ EF ++ + + E+G I+ I Q H+ Sbjct: 8 NYYFGNNLRKFREAKGCSQEEFAEICKISRAYYGRIERGEHSITIEKCALIAQALGIHIS 67 Query: 171 WIYFG 175 ++ Sbjct: 68 VLFTD 72 >gi|300857657|ref|YP_003782640.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685111|gb|ADK28033.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302205396|gb|ADL09738.1| Putative transcription regulator [Corynebacterium pseudotuberculosis C231] gi|302329950|gb|ADL20144.1| Putative transcription regulator [Corynebacterium pseudotuberculosis 1002] gi|308275634|gb|ADO25533.1| Putative transcription regulator [Corynebacterium pseudotuberculosis I19] Length = 475 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 2/87 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +RK +Q +A S VN E+ + ++ + + + D + Sbjct: 6 VGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDVRPLTLPVLHRITEVFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + R + LD + Sbjct: 64 FSKDDASRLLAEVHDVMLDKELCPEDI 90 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +RK++G+SQ L + S ++ E + +I +V Sbjct: 1 MSKTYVGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDVRPLTLPVLHRITEVFGVD 60 Query: 169 LDWIYFGD 176 + D Sbjct: 61 ATFFSKDD 68 >gi|294628187|ref|ZP_06706747.1| cro/CI family transcriptional regulator [Streptomyces sp. e14] gi|292831520|gb|EFF89869.1| cro/CI family transcriptional regulator [Streptomyces sp. e14] Length = 201 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 24/73 (32%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ + + +K R T +A A + E + S+ + + + Sbjct: 13 SDLDLLTQSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDA 72 Query: 83 YEISFDWIYDGEV 95 +S + D E Sbjct: 73 LGVSITTLLDYEQ 85 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 2/85 (2%) Query: 95 VIDRRYEDVTNKKRLD--PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 + N LD ++ +K R ++G + G+ L EQ RT Sbjct: 1 MNSVIQNIGRNVSDLDLLTQSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTN 60 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDE 177 P + KI + + ++ Sbjct: 61 PSLGTVVKIGDALGVSITTLLDYEQ 85 >gi|239832573|ref|ZP_04680902.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239824840|gb|EEQ96408.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R N +Q+E+A A S ++L E + S+ + + I Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEF 63 Query: 91 YDGEVIDRRY 100 + E Sbjct: 64 FALEPDAPHK 73 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ E K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|228944445|ref|ZP_04106818.1| Transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815347|gb|EEM61595.1| Transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 66 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++K R + TQ+++A ++L E G + S+ L + + + + ++ Sbjct: 4 SKVKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 94 EVI 96 E Sbjct: 64 EKE 66 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R ++Q + + +G+ T+S E+G+ P + KI K L+ + Sbjct: 1 MAVSKVKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDL 60 Query: 173 YFGDEV 178 ++ ++ Sbjct: 61 FWEEKE 66 >gi|196249528|ref|ZP_03148225.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196210822|gb|EDY05584.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 71 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ IR++KG+ Q + G+ LS+YE G+ P I A KI V +D Sbjct: 1 MELEPRIREIRENKGLKQKFVAQKTGISQQQLSDYETGKAYPRIDKAYKIAAVLDCKVDD 60 Query: 172 IYFGDEVIVPK 182 +Y E + Sbjct: 61 LYIKKETTPNE 71 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI++IR+ QK +A + ++ +E G I A + + D + Sbjct: 2 ELEPRIREIRENKGLKQKFVAQKTGISQQQLSDYETGKAYPRIDKAYKIAAVLDCKVDDL 61 Query: 91 YDGEVIDRRY 100 Y + Sbjct: 62 YIKKETTPNE 71 >gi|153008774|ref|YP_001369989.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560662|gb|ABS14160.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 182 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ +R N +Q+E+A A S ++L E + S+ + + I Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEF 63 Query: 91 YDGEVIDRRY 100 + E Sbjct: 64 FALEPDAPHK 73 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ E K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|38049246|gb|AAR10417.1| putative repressor protein [Enterococcus faecium] Length = 63 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK IRK TQ+++A + +N EN ++ A L ++ D ++ Sbjct: 3 NKIKAIRKKLGITQEQLAKECGVVRQTINCIENDKYDPTLELAFKLSKMLKVKVDELFIY 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K+IRK G++Q + K G+ T++ E + P ++ A K+ ++ K +D ++ Sbjct: 1 MKNKIKAIRKKLGITQEQLAKECGVVRQTINCIENDKYDPTLELAFKLSKMLKVKVDELF 60 Query: 174 FGD 176 + Sbjct: 61 IYE 63 >gi|91772353|ref|YP_565045.1| XRE family transcriptional regulator [Methanococcoides burtonii DSM 6242] gi|91711368|gb|ABE51295.1| Helix-turn-helix 3 (HTH3)-containing transcriptional regulator, XRE family [Methanococcoides burtonii DSM 6242] Length = 63 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R + TQ+++A +N E G SI+ A + +E S + I+ Sbjct: 3 NNLKVWRAKKDITQEQLAKKIEVTRQTINAIERGKYDPSIKLAFKMARFFECSIEDIFLY 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R K ++Q + K + + T++ E+G+ P IK A K+ + + ++ I+ Sbjct: 1 MKNNLKVWRAKKDITQEQLAKKIEVTRQTINAIERGKYDPSIKLAFKMARFFECSIEDIF 60 Query: 174 FGD 176 + Sbjct: 61 LYE 63 >gi|83309267|ref|YP_419531.1| anaerobic benzoate catabolism transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944108|dbj|BAE48972.1| Shikimate kinase [Magnetospirillum magneticum AMB-1] Length = 290 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 34/96 (35%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ E + +G R+K R ++K+++ A E + E G + S+ Sbjct: 1 MVEQAEFAVLARRLGDRVKGFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWL 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAI 114 L + + + E + KK LD Sbjct: 61 LAQAMDTPITELIEAEAEASHPDLPLAKKFLDQLTP 96 Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K R +GMS+ + G+ L+ E G+ + + Q + + + Sbjct: 18 VKGFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAMDTPITELIEAE 76 >gi|325478374|gb|EGC81489.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 143 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++K +R N TQKE+AI + ++A+ +E G S S + + + + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISKALDCDISALIN 63 Query: 93 GEVIDRRYED 102 E Sbjct: 64 HEPNSIFEIM 73 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + ++Q E G+ ++ + NYE G P + +KI + + Sbjct: 1 MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISKALDCDISA 60 Query: 172 IYFGD 176 + + Sbjct: 61 LINHE 65 >gi|318062399|ref|ZP_07981120.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG] gi|318077608|ref|ZP_07984940.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 398 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ ++Q +A + ++L ENG S+ L E + + Sbjct: 3 NLGAKVRHYRQRGGRSQAVIAGLCGISDRYLSLIENGRAEPSLAVLTSLAAELGVPVGAL 62 Query: 91 YDGEVIDRRYEDVT 104 DG T Sbjct: 63 LDGPQPGPEPVPTT 76 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A+++ R+ G SQ L G+ + LS E GR P + + + + G Sbjct: 6 AKVRHYRQRGGRSQAVIAGLCGISDRYLSLIENGRAEPSLAVLTSLAAELGVPVGALLDG 65 >gi|315301442|ref|ZP_07872607.1| transcriptional regulator [Listeria ivanovii FSL F6-596] gi|313630189|gb|EFR98157.1| transcriptional regulator [Listeria ivanovii FSL F6-596] Length = 73 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+ Q ++A ++ E G + S+ +L + +E++ + I+ Sbjct: 11 NRVKTLREERGIAQNDLASILEVSRQTIHAIEKGKYNPSLELSLKIAKYFELAVEEIFQL 70 Query: 94 EVI 96 E Sbjct: 71 EKE 73 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 39/69 (56%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D + R+K++R+++G++Q + +L + T+ E+G+ P ++ + KI + + + Sbjct: 5 DYLKVINRVKTLREERGIAQNDLASILEVSRQTIHAIEKGKYNPSLELSLKIAKYFELAV 64 Query: 170 DWIYFGDEV 178 + I+ ++ Sbjct: 65 EEIFQLEKE 73 >gi|302517506|ref|ZP_07269848.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302426401|gb|EFK98216.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 398 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ ++Q +A + ++L ENG S+ L E + + Sbjct: 3 NLGAKVRHYRQRGGRSQAVIAGLCGISDRYLSLIENGRAEPSLAVLTSLAAELGVPVGAL 62 Query: 91 YDGEVIDRRYEDVT 104 DG T Sbjct: 63 LDGPQPGPEPVPTT 76 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A+++ R+ G SQ L G+ + LS E GR P + + + + G Sbjct: 6 AKVRHYRQRGGRSQAVIAGLCGISDRYLSLIENGRAEPSLAVLTSLAAELGVPVGALLDG 65 >gi|255973367|ref|ZP_05423953.1| predicted protein [Enterococcus faecalis T2] gi|256962505|ref|ZP_05566676.1| predicted protein [Enterococcus faecalis HIP11704] gi|255966239|gb|EET96861.1| predicted protein [Enterococcus faecalis T2] gi|256953001|gb|EEU69633.1| predicted protein [Enterococcus faecalis HIP11704] Length = 78 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +W G ++K R N TQK++A+ ++ E S+ A L N + Sbjct: 2 TDNFWMLQGNQLKKWRDRRNLTQKQLAMKIGCQRMTISRIEQEKQKPSLELAYSLANALD 61 Query: 85 ISFDWIYDGEVIDRRY 100 + + ++ E +R Sbjct: 62 LKIEDLFLFENKEREN 77 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +LK R + ++Q + +G T+S EQ + P ++ A + ++ Sbjct: 6 WMLQGNQLKKWRDRRNLTQKQLAMKIGCQRMTISRIEQEKQKPSLELAYSLANALDLKIE 65 Query: 171 WIYFGDEVIVP 181 ++ + Sbjct: 66 DLFLFENKERE 76 >gi|255324218|ref|ZP_05365340.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] gi|255298734|gb|EET78029.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] Length = 492 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 38/111 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R+ + +Q +A S VN E+ + ++ L + + + + Sbjct: 29 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFFS 88 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + E + + L+ + + L+ + Sbjct: 89 RDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDVHRRY 139 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 35/88 (39%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 +N + +G+RL+ +R+++ +SQ LG+ S ++ E + Sbjct: 14 TRRPASNLAGMSKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVL 73 Query: 159 RKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 +I +V + D+ + I+ Sbjct: 74 LRITEVFGVDATFFSRDDDSRLLAEIQD 101 >gi|229139131|ref|ZP_04267708.1| hypothetical protein bcere0013_22440 [Bacillus cereus BDRD-ST26] gi|228644486|gb|EEL00741.1| hypothetical protein bcere0013_22440 [Bacillus cereus BDRD-ST26] Length = 204 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 20 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKVVLRNDVQVL 104 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 88 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 89 PQPDTKVVLRN 99 >gi|311741010|ref|ZP_07714835.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303812|gb|EFQ79890.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 492 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 38/111 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R+ + +Q +A S VN E+ + ++ L + + + + Sbjct: 29 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFFS 88 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + E + + L+ + + L+ + Sbjct: 89 RDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDVHRRY 139 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 35/88 (39%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 +N + +G+RL+ +R+++ +SQ LG+ S ++ E + Sbjct: 14 TRRPASNLAGMSKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVL 73 Query: 159 RKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 +I +V + D+ + I+ Sbjct: 74 LRITEVFGVDATFFSRDDDSRLLAEIQD 101 >gi|226308346|ref|YP_002768306.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187463|dbj|BAH35567.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 62 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+ +R G+SQ LG+ T+ + E+G P + A +I + K +D ++ Sbjct: 1 MRNNLQELRTAAGLSQQACADALGITRQTVISIEKGHFDPRLSLAFRIAEYFDKRVDDVF 60 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++++R A +Q+ A V E G + A + ++ D ++ Sbjct: 3 NNLQELRTAAGLSQQACADALGITRQTVISIEKGHFDPRLSLAFRIAEYFDKRVDDVF 60 >gi|225572879|ref|ZP_03781634.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|317500124|ref|ZP_07958358.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087647|ref|ZP_08336575.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] gi|225039744|gb|EEG49990.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|316898479|gb|EFV20516.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|330399826|gb|EGG79486.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] Length = 211 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 3/73 (4%) Query: 25 IRQYWKDV---GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + Y K + G I+ IRK Q+E+A +++ E G+ + + + Sbjct: 1 MEHYEKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNFPTFDTLEKIMD 60 Query: 82 EYEISFDWIYDGE 94 + + + GE Sbjct: 61 VLGVMPNELLSGE 73 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++IRK +GM Q E +G+ +LS E+G P KI V + + G Sbjct: 13 ENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNFPTFDTLEKIMDVLGVMPNELLSG 72 Query: 176 DEVIVPKSIKR 186 + V +S K Sbjct: 73 EWKYVNQSEKE 83 >gi|153853928|ref|ZP_01995261.1| hypothetical protein DORLON_01252 [Dorea longicatena DSM 13814] gi|149753310|gb|EDM63241.1| hypothetical protein DORLON_01252 [Dorea longicatena DSM 13814] Length = 119 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ R T++E A + A +E G + SI+ + + S D++ Sbjct: 7 ERLKECRLKLGITKQEAAKRIQISQPAYLRYEAGSRNPSIQIISKMAEVFSTSTDYLIGK 66 Query: 94 EVIDRRYEDVTNKKR 108 V + Sbjct: 67 SADSSPNRLVVEQSD 81 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK R G+++ E K + + YE G P I+ K+ +V D++ Sbjct: 5 DKERLKECRLKLGITKQEAAKRIQISQPAYLRYEAGSRNPSIQIISKMAEVFSTSTDYLI 64 >gi|148263396|ref|YP_001230102.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396896|gb|ABQ25529.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 174 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 44/112 (39%), Gaps = 4/112 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGA--NQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G+R+K +R + TQKE+A+ + + E G S++ L + + Sbjct: 30 EIGSRLKRLRMERSLTQKELAVRVSGGLDYTYIGKIERGEQLPSLKILLKISEALSVPVA 89 Query: 89 WIYDGEVIDRRYEDVTN--KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + E + + ++ + + ++++R +++ + Sbjct: 90 SFFQDEAVAAVSDISSSELRYLVSEETGRELVRALRLVHKDDLPLLIEIIQV 141 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLL--GMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 IG+RLK +R ++ ++Q E + G+ + + E+G +P +K KI + + Sbjct: 29 LEIGSRLKRLRMERSLTQKELAVRVSGGLDYTYIGKIERGEQLPSLKILLKISEALSVPV 88 Query: 170 DWIYFGDEVIVPKSIKRAK 188 + + V I ++ Sbjct: 89 ASFFQDEAVAAVSDISSSE 107 >gi|69245018|ref|ZP_00603176.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257879285|ref|ZP_05658938.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881898|ref|ZP_05661551.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890113|ref|ZP_05669766.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615689|ref|ZP_05713459.1| hypothetical protein EfaeD_08257 [Enterococcus faecium DO] gi|260558729|ref|ZP_05830918.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|293563230|ref|ZP_06677683.1| transcriptional regulator, putative [Enterococcus faecium E1162] gi|294622366|ref|ZP_06701395.1| transcriptional regulator, putative [Enterococcus faecium U0317] gi|314937319|ref|ZP_07844659.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314943378|ref|ZP_07850149.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314949074|ref|ZP_07852436.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|314953479|ref|ZP_07856395.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994167|ref|ZP_07859474.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995977|ref|ZP_07861057.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|68196019|gb|EAN10451.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257813513|gb|EEV42271.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817556|gb|EEV44884.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826473|gb|EEV53099.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260075188|gb|EEW63501.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291598126|gb|EFF29229.1| transcriptional regulator, putative [Enterococcus faecium U0317] gi|291604825|gb|EFF34306.1| transcriptional regulator, putative [Enterococcus faecium E1162] gi|313589853|gb|EFR68698.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591434|gb|EFR70279.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594512|gb|EFR73357.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313597922|gb|EFR76767.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313643270|gb|EFS07850.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|313644551|gb|EFS09131.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 270 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RI+ IR+ + ++ S VN +E G+ + ++ + Sbjct: 6 QAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIGHVTNE 65 Query: 89 WIYDGEVIDRRYEDVTNKK 107 ++ G+ ++ ++ KK Sbjct: 66 YLLYGDQENQYILEMLQKK 84 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D A+G R++ IR++ +S +FGKL+G +P ST++N+E+G +P+ + +I ++ Sbjct: 1 MEIDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIG 60 Query: 166 KKHLDWIYFGDEV 178 +++ +GD+ Sbjct: 61 HVTNEYLLYGDQE 73 >gi|313112793|ref|ZP_07798440.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624863|gb|EFQ08171.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 110 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 37/76 (48%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ +RKAN TQ+EMAI N + + E G C+ SI + + + + D++ Sbjct: 9 GKRIQQLRKANGMTQEEMAIRLNISDRHLGRIERGECAASIDLMVEVVVLLKANLDFLII 68 Query: 93 GEVIDRRYEDVTNKKR 108 G R D+ + Sbjct: 69 GVTETPRERDLIAHIK 84 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 D YA G R++ +RK GM+Q E L + + L E+G I ++ + K Sbjct: 1 MYFDSYATGKRIQQLRKANGMTQEEMAIRLNISDRHLGRIERGECAASIDLMVEVVVLLK 60 Query: 167 KHLDWIYFG 175 +LD++ G Sbjct: 61 ANLDFLIIG 69 >gi|229091875|ref|ZP_04223064.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-42] gi|228691455|gb|EEL45214.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-42] Length = 433 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 3/97 (3%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++G RI+ +R TQ E+ G + ++ E+G S + + + Sbjct: 5 NKESKNMEIGERIRHVRMHKGLTQGELVSGI-CSITYLSRIESGKIKPSSSFIKKVSKKL 63 Query: 84 EISFDWIYDG--EVIDRRYEDVTNKKRLDPYAIGARL 118 E+ D++ +G E I + NK + D A L Sbjct: 64 EVKSDYLINGNYEEIKLTIFKICNKYKKDKSITEADL 100 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 1/98 (1%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 K IG R++ +R KG++Q E + + LS E G+ P +K+ Sbjct: 1 MKWLNKESKNMEIGERIRHVRMHKGLTQGELVSGI-CSITYLSRIESGKIKPSSSFIKKV 59 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + + D++ G+ + +I + KS + Sbjct: 60 SKKLEVKSDYLINGNYEEIKLTIFKICNKYKKDKSITE 97 >gi|268591074|ref|ZP_06125295.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313881|gb|EFE54334.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 106 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +T + K++G ++ IRK N T +E+A N + ++ +E G + + Sbjct: 1 MTYFSNEINKEIGQYLRGIRKERNLTGEELAKRLNISQQQISRYETGKTKLTFEMMDTIL 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVT 104 + S+ +++ + E + Sbjct: 61 LIFNKSWRDLFNHVIDRYDNERLQ 84 Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG L+ IRK++ ++ E K L + +S YE G+T + I + K Sbjct: 9 NKEIGQYLRGIRKERNLTGEELAKRLNISQQQISRYETGKTKLTFEMMDTILLIFNKSWR 68 Query: 171 WIY 173 ++ Sbjct: 69 DLF 71 >gi|255655987|ref|ZP_05401396.1| putative phage regulatory protein [Clostridium difficile QCD-23m63] gi|296450586|ref|ZP_06892339.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296879295|ref|ZP_06903290.1| probable phage regulatory protein [Clostridium difficile NAP07] gi|296260430|gb|EFH07272.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296429838|gb|EFH15690.1| probable phage regulatory protein [Clostridium difficile NAP07] Length = 123 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI ++RK + QKE+A E++++ +EN + + L E S D Sbjct: 1 MESLGDRIANLRKELDINQKELATKVGITEASLSRYENNLREPKSEIIVRLAKALETSTD 60 Query: 89 WIYDGEVIDRRYEDVT 104 ++ ++ Sbjct: 61 YLLGVNDNTNISKEDK 76 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 39/90 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++G R+ ++RK+ ++Q E +G+ ++LS YE P+ + ++ + + D Sbjct: 1 MESLGDRIANLRKELDINQKELATKVGITEASLSRYENNLREPKSEIIVRLAKALETSTD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ ++ + S K K Sbjct: 61 YLLGVNDNTNISKEDKLIIENLSVSEKTKK 90 >gi|218689364|ref|YP_002397576.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218426928|emb|CAR07787.2| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|315298577|gb|EFU57832.1| helix-turn-helix protein [Escherichia coli MS 16-3] Length = 178 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSSTPSVYDPQRQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKSIKRAK 188 P + Sbjct: 72 SSTPSVYDPQR 82 >gi|29374945|ref|NP_814098.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|257088816|ref|ZP_05583177.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|281416438|ref|YP_003347358.1| cI repressor protein [Enterococcus phage phiFL4A] gi|29342403|gb|AAO80169.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256997628|gb|EEU84148.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|270209614|gb|ACZ64153.1| cI repressor protein [Enterococcus phage phiFL4A] gi|315160614|gb|EFU04631.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0645] gi|315579460|gb|EFU91651.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] Length = 120 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK +Q+E+A ++ +E G+ + S + +++S D++ Sbjct: 7 RLKELRKNKKMSQQELATFLGMKRENISNYERGVITNVSSDTLEKISELFDVSIDYLLGK 66 Query: 94 EVIDRRYEDVTNKKRL 109 + + K+ + Sbjct: 67 SDTSNQKNESMAKQVM 82 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK +RK+K MSQ E LGM +SNYE+G T KI ++ +D++ Sbjct: 8 LKELRKNKKMSQQELATFLGMKRENISNYERGVITNVSSDTLEKISELFDVSIDYLLGKS 67 Query: 177 EVIVPKSIKRAK 188 + K+ AK Sbjct: 68 DTSNQKNESMAK 79 >gi|26247719|ref|NP_753759.1| hypothetical protein c1858 [Escherichia coli CFT073] gi|110641615|ref|YP_669345.1| hypothetical protein ECP_1437 [Escherichia coli 536] gi|191172851|ref|ZP_03034387.1| DNA-binding protein [Escherichia coli F11] gi|227886179|ref|ZP_04003984.1| possible transcriptional regulator [Escherichia coli 83972] gi|300975406|ref|ZP_07172980.1| helix-turn-helix protein [Escherichia coli MS 200-1] gi|300976462|ref|ZP_07173445.1| helix-turn-helix protein [Escherichia coli MS 45-1] gi|301046759|ref|ZP_07193881.1| helix-turn-helix protein [Escherichia coli MS 185-1] gi|331657437|ref|ZP_08358399.1| putative oxidoreductase/putative repressor [Escherichia coli TA206] gi|26108121|gb|AAN80321.1|AE016760_180 Hypothetical protein ydcN [Escherichia coli CFT073] gi|47600733|emb|CAE55854.1| hypothetical protein YdcN [Escherichia coli Nissle 1917] gi|110343207|gb|ABG69444.1| hypothetical protein YdcN (putative DNA-binding protein) [Escherichia coli 536] gi|190906857|gb|EDV66460.1| DNA-binding protein [Escherichia coli F11] gi|227836844|gb|EEJ47310.1| possible transcriptional regulator [Escherichia coli 83972] gi|300301320|gb|EFJ57705.1| helix-turn-helix protein [Escherichia coli MS 185-1] gi|300308732|gb|EFJ63252.1| helix-turn-helix protein [Escherichia coli MS 200-1] gi|300410034|gb|EFJ93572.1| helix-turn-helix protein [Escherichia coli MS 45-1] gi|307553442|gb|ADN46217.1| putative HTH-type transcriptional regulator YdcN [Escherichia coli ABU 83972] gi|315290641|gb|EFU50013.1| helix-turn-helix protein [Escherichia coli MS 153-1] gi|320195607|gb|EFW70232.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli WV_060327] gi|324015156|gb|EGB84375.1| helix-turn-helix protein [Escherichia coli MS 60-1] gi|331055685|gb|EGI27694.1| putative oxidoreductase/putative repressor [Escherichia coli TA206] Length = 178 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSSTPSVYDPQRQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKSIKRAK 188 P + Sbjct: 72 SSTPSVYDPQR 82 >gi|228956421|ref|ZP_04118232.1| Transcription regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803254|gb|EEM50062.1| Transcription regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 114 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK +RK N TQ+ + + +E+ S L + E++ D++ Sbjct: 3 IGARIKKLRKQRNWTQEILGKKVGASSRVIGYYESEERFPSPDTIAKLSDTLEVTTDFLL 62 Query: 92 DGEVIDRRYEDVTNKKRL 109 + K+ + Sbjct: 63 GRGNELDIKKHTKFKEIM 80 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGAR+K +RK + +Q GK +G + + YE P K+ + D+ Sbjct: 1 MGIGARIKKLRKQRNWTQEILGKKVGASSRVIGYYESEERFPSPDTIAKLSDTLEVTTDF 60 Query: 172 IY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + G+E+ + K K + + ++K+ Sbjct: 61 LLGRGNELDIKKHTKFKEIMERLDTLPEEKQE 92 >gi|257792397|ref|YP_003183003.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317490265|ref|ZP_07948753.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA] gi|325833618|ref|ZP_08166067.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257476294|gb|ACV56614.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316910759|gb|EFV32380.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA] gi|325485542|gb|EGC88011.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 83 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R +Q E+A ++ E G+ + + + AL L + F+ ++ Sbjct: 23 NRLKAARAEAGLSQAELAGLVGVSRQTISSIETGLFNPTAKLALVLCIALDKKFEDLFYF 82 Query: 94 E 94 E Sbjct: 83 E 83 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK+ R + G+SQ E L+G+ T+S+ E G P K A + K + +++ Sbjct: 23 NRLKAARAEAGLSQAELAGLVGVSRQTISSIETGLFNPTAKLALVLCIALDKKFEDLFYF 82 Query: 176 D 176 + Sbjct: 83 E 83 >gi|157159776|ref|YP_001457094.1| helix-turn-helix/peptidase S24-like domain-containing protein [Escherichia coli HS] gi|157065456|gb|ABV04711.1| helix-turn-helix/peptidase S24-like domain protein [Escherichia coli HS] Length = 213 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R+ R++ TQ +++ A ++ + +E G +R L N + +W+ G Sbjct: 9 SRVSLARQSRGMTQAQLSKLAGVVQRQIAAYEGGEAKPRLRVLQALANALGTTAEWLALG 68 Query: 94 EVIDRRYEDV 103 E ++V Sbjct: 69 EGQGPGTKNV 78 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 R+ +GM+Q + KL G+ ++ YE G P ++ + + +W+ G+ Sbjct: 14 ARQSRGMTQAQLSKLAGVVQRQIAAYEGGEAKPRLRVLQALANALGTTAEWLALGE 69 >gi|307269877|ref|ZP_07551204.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4248] gi|306513784|gb|EFM82389.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4248] Length = 128 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+ TQKE+A + S N E+G + + Y +S D++ + Sbjct: 8 ERLKQLRENKELTQKELADLLHMDRSVYNKIESGARPIRDNELIQFADFYNVSTDYLTNR 67 Query: 94 EVIDRRYEDVTN 105 E+ TN Sbjct: 68 TNNPIPPEEKTN 79 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + RLK +R++K ++Q E LL M S + E G + Sbjct: 1 MTIIKTNERLKQLRENKELTQKELADLLHMDRSVYNKIESGARPIRDNELIQFADFYNVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 D++ +P K G Sbjct: 61 TDYLTNRTNNPIPPEEKTNVGQN 83 >gi|302388002|ref|YP_003823824.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198630|gb|ADL06201.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 138 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS-IRYALYLRNEYEISFDWIY 91 R+K+ R N TQ E+A A + +E G S + + + + +++ Sbjct: 5 ERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKIADALNTTTEYLL 63 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE-IKPARKIKQVTKKHLD 170 RLK R + ++Q+E + G+ T+ NYE G P + +KI + Sbjct: 1 MVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKIADALNTTTE 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|283769042|ref|ZP_06341948.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104399|gb|EFC05776.1| DNA-binding protein [Bulleidia extructa W1219] Length = 136 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 8/99 (8%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +R N TQKEM N +V+ +ENG I + ++I + Sbjct: 13 RQMKQVRIENGLTQKEMGEILNVSAQSVSAYENGTVRPDIEVIFRYMDYFQIPMAYFLKE 72 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + + + L + + RK Q Sbjct: 73 LNSELKDKPTALEMEL--------ISAFRKSPYFIQQSI 103 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 N + + ++K +R + G++Q E G++L + ++S YE G P+I+ + Sbjct: 2 NTIENEIQTLLRQMKQVRIENGLTQKEMGEILNVSAQSVSAYENGTVRPDIEVIFRYMDY 61 Query: 165 TKKHLDWIYFG 175 + + + Sbjct: 62 FQIPMAYFLKE 72 >gi|255652577|ref|ZP_05399479.1| putative phage DNA-binding protein [Clostridium difficile QCD-37x79] Length = 278 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK RK TQ+++A A A+ +E ++ L + S D I Sbjct: 3 IGENIKTFRKDRRMTQEQLAEKAGISRVALGNYEREERVPNLDILEKLATALDTSTDIIM 62 Query: 92 DGEVIDRRYEDVTN 105 + N Sbjct: 63 NLHKFSLDEIHELN 76 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K+ RKD+ M+Q + + G+ L NYE+ +P + K+ D Sbjct: 1 MGIGENIKTFRKDRRMTQEQLAEKAGISRVALGNYEREERVPNLDILEKLATALDTSTDI 60 Query: 172 IY 173 I Sbjct: 61 IM 62 >gi|169342435|ref|ZP_02863498.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169299434|gb|EDS81499.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 330 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RK N +Q E+A + + +E +I + L S D + Sbjct: 8 NLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNRSIDSL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 D+ N I +L Sbjct: 68 LGLNHSTENTNDLNNSDLSKKIFILNKL 95 >gi|167463777|ref|ZP_02328866.1| prophage Lp1 protein 8 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 123 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 30/75 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +Y + TR++++R N +Q+E A + + +E+G + + + + Sbjct: 2 EMKYKEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFN 61 Query: 85 ISFDWIYDGEVIDRR 99 S D++ Sbjct: 62 TSTDYLLGKTDNPES 76 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +R G SQ EF K +G+ + ++NYE GR P + KI + D++ Sbjct: 8 VFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFNTSTDYL 67 Query: 173 YFGDEVIVPKSIKR 186 + ++ Sbjct: 68 LGKTDNPESLKVRD 81 >gi|117621210|ref|YP_858380.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562617|gb|ABK39565.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 230 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 28/74 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + + R+K +R + A ++ + E G S ++ + + Sbjct: 42 MQEMNQHLAQRLKGLRSELGWSLDVAARETGVSKAMLGQIERGESSPTVATLWKIATGFR 101 Query: 85 ISFDWIYDGEVIDR 98 +SF + ++ Sbjct: 102 VSFSSFIEPTPAEQ 115 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Query: 83 YEISFDWIY---DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 Y I+ D+I + ++ + ++ + + RLK +R + G S + G+ Sbjct: 16 YNIASDYIVVRYSAQGDSSKHNKEAVMQEMNQH-LAQRLKGLRSELGWSLDVAARETGVS 74 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L E+G + P + KI + Sbjct: 75 KAMLGQIERGESSPTVATLWKIATGFRVSFSSFI 108 >gi|51894099|ref|YP_076790.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51857788|dbj|BAD41946.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 196 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 27/79 (34%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 W +G RI+ R T +E+A + + + EN S S++ L + Sbjct: 7 WMSLGHRIRQTRTQKGITLQELAERSGLSKGFLCQLENDKASPSLQALDRLSAGLGVPVA 66 Query: 89 WIYDGEVIDRRYEDVTNKK 107 + + ++ Sbjct: 67 LLLISQEERAHVVRANARQ 85 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 26/68 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++G R++ R KG++ E + G+ L E + P ++ ++ + Sbjct: 7 WMSLGHRIRQTRTQKGITLQELAERSGLSKGFLCQLENDKASPSLQALDRLSAGLGVPVA 66 Query: 171 WIYFGDEV 178 + E Sbjct: 67 LLLISQEE 74 >gi|120536951|ref|YP_957009.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326785|gb|ABM21094.1| transcriptional regulator, XRE family [Marinobacter aquaeolei VT8] Length = 229 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 1/91 (1%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + GTRIK IR+ +Q +A ++ ++ E+G+ + L + ++ Sbjct: 3 FDMQFGTRIKQIREIRKISQGFLARQVGLTQATISRIESGIPEATAS-LLDMARALKVDP 61 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 W+ GE + L L Sbjct: 62 FWLQTGEGSPDSAPEWLVSNFLRYRFSPNDL 92 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G R+K IR+ + +SQ + +G+ +T+S E G + + K W Sbjct: 5 MQFGTRIKQIREIRKISQGFLARQVGLTQATISRIESGIPEATASLL-DMARALKVDPFW 63 Query: 172 IYFGD 176 + G+ Sbjct: 64 LQTGE 68 >gi|328956456|ref|YP_004373842.1| transcriptional regulator [Carnobacterium sp. 17-4] gi|328672780|gb|AEB28826.1| transcriptional regulator [Carnobacterium sp. 17-4] Length = 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R N+ +Q+++A N ++ E G + +I + + +++ + ++ E Sbjct: 6 RLKAARAKNDLSQQQLADAVNVTRQTISAIERGDYNPTINLCREICKKLDLTLNDLFWEE 65 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A RLK+ R +SQ + + + T+S E+G P I R+I + L+ Sbjct: 1 MAKNLRLKAARAKNDLSQQQLADAVNVTRQTISAIERGDYNPTINLCREICKKLDLTLND 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 LFWEE 65 >gi|293414771|ref|ZP_06657420.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185] gi|291434829|gb|EFF07802.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185] Length = 178 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/123 (8%), Positives = 34/123 (27%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + F ++ + ++ + + Q+ G + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFEHFSIQMAPGAISESTPHEKG 120 Query: 145 NYE 147 E Sbjct: 121 VIE 123 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|227431794|ref|ZP_03913821.1| hypothetical protein HMPREF0555_0755 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352477|gb|EEJ42676.1| hypothetical protein HMPREF0555_0755 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 66 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLES-AVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +++++R E++ N S AV +E G +I + + + + +S D++ Sbjct: 2 NKLRELRIERGLKISELSNELNLAGSDAVGKYERGEREPNIHILIAIADYFNVSIDYLV 60 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNS-TLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +L+ +R ++G+ E L + S + YE+G P I I +D++ Sbjct: 1 MNKLRELRIERGLKISELSNELNLAGSDAVGKYERGEREPNIHILIAIADYFNVSIDYLV 60 >gi|190889651|ref|YP_001976193.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190694930|gb|ACE89015.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 125 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 5/108 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFD-- 88 G ++ +R +QKEMA N + ++ E+G + + + I +D Sbjct: 4 FGEAVRRLRARKGVSQKEMAAALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIWDEA 63 Query: 89 -WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 ++ + Y A + R+ + + E +L Sbjct: 64 EELFLLARSSDPRVIIDTSGLPPEYTEFAN-RLARRIRKLDSAEIARL 110 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 4/83 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 G ++ +R KG+SQ E L + + LS E G+ +P ++I Sbjct: 1 MTPFGEAVRRLRARKGVSQKEMAAALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIW 60 Query: 168 -HLDWIYFGDEVIVPKSIKRAKG 189 + ++ P+ I G Sbjct: 61 DEAEELFLLARSSDPRVIIDTSG 83 >gi|153811805|ref|ZP_01964473.1| hypothetical protein RUMOBE_02198 [Ruminococcus obeum ATCC 29174] gi|149832208|gb|EDM87293.1| hypothetical protein RUMOBE_02198 [Ruminococcus obeum ATCC 29174] gi|295108702|emb|CBL22655.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 108 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 38/85 (44%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 ++ R D + +G +K R+++G +Q +L+G + T+ N E P K+ Sbjct: 1 MNQDEIRFDFHGLGLAIKQAREERGWTQAYVAELVGKTDRTIMNIENKGQHPSFNLFFKL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKR 186 + +D ++ +E S ++ Sbjct: 61 VTMFDISVDQFFYREEQRDEHSCRK 85 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 EIR + +G IK R+ TQ +A + + + EN S L + Sbjct: 5 EIRFDFHGLGLAIKQAREERGWTQAYVAELVGKTDRTIMNIENKGQHPSFNLFFKLVTMF 64 Query: 84 EISFDWIYDGEVIDRRY 100 +IS D + E + Sbjct: 65 DISVDQFFYREEQRDEH 81 >gi|145298596|ref|YP_001141437.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449] gi|142851368|gb|ABO89689.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449] Length = 227 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI R A N ++ +A + +V +E+G+ RY L ++ DW+ Sbjct: 3 ISDRIFSRRTALNLSKTALAKAIGVSDVSVGKWESGLNQPKGRYLNDLAAALGVTVDWLL 62 Query: 92 DGEVIDRRYEDV 103 G Sbjct: 63 AGSGDGPEQPIP 74 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+ S R +S+ K +G+ + ++ +E G P+ + + +DW Sbjct: 1 MTISDRIFSRRTALNLSKTALAKAIGVSDVSVGKWESGLNQPKGRYLNDLAAALGVTVDW 60 Query: 172 IYFGDEVIVPKSI 184 + G + I Sbjct: 61 LLAGSGDGPEQPI 73 >gi|124010294|ref|ZP_01694946.1| cryptic phage CTXphi transcriptional repressor RstR [Microscilla marina ATCC 23134] gi|123983628|gb|EAY24073.1| cryptic phage CTXphi transcriptional repressor RstR [Microscilla marina ATCC 23134] Length = 121 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK +R+A +QKE+A+ N +S + E G + + I + Sbjct: 2 EIGDKIKKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNIEVAEL 61 Query: 91 Y 91 + Sbjct: 62 F 62 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R+ K +SQ E L M S S E+G+T P KI + + Sbjct: 1 MEIGDKIKKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNIEVAE 60 Query: 172 IYFGDEVIV 180 ++ D++ Sbjct: 61 LFVSDQLFK 69 >gi|119899299|ref|YP_934512.1| putative DNA binding helix-turn helix protein [Azoarcus sp. BH72] gi|119671712|emb|CAL95625.1| putative DNA binding helix-turn helix protein [Azoarcus sp. BH72] Length = 200 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 6/83 (7%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 +++L E + + E VG I+++R T ++A A ++ E G Sbjct: 1 MENLTEKSAPVLEES------VGAVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTM 54 Query: 71 TSIRYALYLRNEYEISFDWIYDG 93 + + ++ ++ Sbjct: 55 AGMDTLARIARSLGVAMSALFSR 77 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 A ++ +R +G++ + +L G+ LS E G T+ + +I + + ++ Sbjct: 18 AVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTMAGMDTLARIARSLGVAMSALFSR 77 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + +K G + ++ K + Sbjct: 78 YDATTASAQHVKGGAGMEVVRRGTKSGHT 106 >gi|91779177|ref|YP_554385.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691837|gb|ABE35035.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 302 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 33/98 (33%), Gaps = 5/98 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW- 89 D+G ++ R +Q +++ A + ++ E+G S + L + +I Sbjct: 30 DLGVLLRHWRDLRAVSQLDLSFRAGVSQRHISFIESGRSVPSRQMLLDIAQTLDIPLRER 89 Query: 90 ---IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 + + N + + + +R+ Sbjct: 90 NTLLLAAGYAPIYADTAWNAQEMQSVTNALG-RMLRQH 126 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R + +SQ++ G+ +S E GR++P + I Q L Sbjct: 35 LRHWRDLRAVSQLDLSFRAGVSQRHISFIESGRSVPSRQMLLDIAQTLDIPL 86 >gi|82777001|ref|YP_403350.1| hypothetical protein SDY_1742 [Shigella dysenteriae Sd197] gi|81241149|gb|ABB61859.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 178 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/123 (8%), Positives = 34/123 (27%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + F ++ + ++ + + Q+ G + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFEHFSIQMAPGAISESTPHEKG 120 Query: 145 NYE 147 E Sbjct: 121 VIE 123 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|19551615|ref|NP_599617.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 469 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R++ +R+ + +Q +A S VN E+ + ++ L + + + D + Sbjct: 1 MGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV--DATF 58 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR--LKSIRKD-KGMSQIEFG 133 D R LD A L+ + + Q+ Sbjct: 59 FSRDDDSRLLAEVQDVMLDREINPANVELQELSEMVYNHPQLARA 103 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 31/73 (42%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G+RL+ +R+++ +SQ LG+ S ++ E + +I + + Sbjct: 1 MGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVDATFFS 60 Query: 174 FGDEVIVPKSIKR 186 D+ + ++ Sbjct: 61 RDDDSRLLAEVQD 73 >gi|15801709|ref|NP_287727.1| hypothetical protein Z2285 [Escherichia coli O157:H7 EDL933] gi|15831292|ref|NP_310065.1| hypothetical protein ECs2037 [Escherichia coli O157:H7 str. Sakai] gi|168748967|ref|ZP_02773989.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|168759171|ref|ZP_02784178.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|168761476|ref|ZP_02786483.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|168769035|ref|ZP_02794042.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|168774335|ref|ZP_02799342.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|168781404|ref|ZP_02806411.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|168788512|ref|ZP_02813519.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|168799439|ref|ZP_02824446.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|195936926|ref|ZP_03082308.1| hypothetical protein EscherichcoliO157_10762 [Escherichia coli O157:H7 str. EC4024] gi|208810881|ref|ZP_03252714.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208815156|ref|ZP_03256335.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208818249|ref|ZP_03258569.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209397754|ref|YP_002270440.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|217329087|ref|ZP_03445167.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|254792977|ref|YP_003077814.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|261224380|ref|ZP_05938661.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261257365|ref|ZP_05949898.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|291282537|ref|YP_003499355.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615] gi|12515268|gb|AAG56341.1|AE005362_11 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361504|dbj|BAB35461.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770139|gb|EDU33983.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188016678|gb|EDU54800.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|189000937|gb|EDU69923.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189354230|gb|EDU72649.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189361883|gb|EDU80302.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189368111|gb|EDU86527.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189371782|gb|EDU90198.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189378128|gb|EDU96544.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|208724387|gb|EDZ74095.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208731804|gb|EDZ80492.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208738372|gb|EDZ86054.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209159154|gb|ACI36587.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209771028|gb|ACI83826.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771030|gb|ACI83827.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771032|gb|ACI83828.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771034|gb|ACI83829.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771036|gb|ACI83830.1| hypothetical protein ECs2037 [Escherichia coli] gi|217317526|gb|EEC25954.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|254592377|gb|ACT71738.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|290762410|gb|ADD56371.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615] gi|320190111|gb|EFW64762.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. EC1212] gi|320637032|gb|EFX06893.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. G5101] gi|320642399|gb|EFX11685.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H- str. 493-89] gi|320647755|gb|EFX16500.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H- str. H 2687] gi|320653362|gb|EFX21499.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659028|gb|EFX26651.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320663862|gb|EFX31090.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. LSU-61] gi|326340694|gb|EGD64491.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. 1044] gi|326340945|gb|EGD64738.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. 1125] Length = 178 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/123 (8%), Positives = 34/123 (27%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + F ++ + ++ + + Q+ G + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFEHFSIQMAPGAISESTPHEKG 120 Query: 145 NYE 147 E Sbjct: 121 VIE 123 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|327191185|gb|EGE58228.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 125 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 5/108 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFD-- 88 G ++ +R +QKEMA N + ++ E+G + + + I +D Sbjct: 4 FGEAVRRLRARKGVSQKEMAAALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIWDEA 63 Query: 89 -WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 ++ + Y A + R+ + + E +L Sbjct: 64 EELFLLARSSDPRVVIDTSGLPPEYTEFAN-RLARRIRKLDSAEIARL 110 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 G ++ +R KG+SQ E L + + LS E G+ +P ++I Sbjct: 1 MTPFGEAVRRLRARKGVSQKEMAAALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIW 60 Query: 168 -HLDWIYFGDEVIVPKSIKRAKG 189 + ++ P+ + G Sbjct: 61 DEAEELFLLARSSDPRVVIDTSG 83 >gi|308067389|ref|YP_003868994.1| transcriptional regulator ydcN [Paenibacillus polymyxa E681] gi|305856668|gb|ADM68456.1| Putative HTH-type transcriptional regulator ydcN [Paenibacillus polymyxa E681] Length = 183 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R + ++A ++ + E G + SI + N +ISF + Sbjct: 8 LSKNLKYLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISFTALI 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 + D + + L Sbjct: 68 NEPPSDAVVVPKSKVQVL 85 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +R ++ +S + L G+ + L E+G + P I KI K + Sbjct: 10 KNLKYLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISFTALINE 69 Query: 176 ---DEVIVPKS 183 D V+VPKS Sbjct: 70 PPSDAVVVPKS 80 >gi|228477794|ref|ZP_04062422.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250486|gb|EEK09700.1| conserved domain protein [Streptococcus salivarius SK126] Length = 66 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R A + TQ+ +A ++ E G + +I + + + + D ++ Sbjct: 5 KMKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLF 61 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS R K ++Q +G+ T+S E+G P I I + K LD +++ E Sbjct: 6 MKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLFWESE 65 Query: 178 V 178 Sbjct: 66 D 66 >gi|160894971|ref|ZP_02075745.1| hypothetical protein CLOL250_02521 [Clostridium sp. L2-50] gi|156863402|gb|EDO56833.1| hypothetical protein CLOL250_02521 [Clostridium sp. L2-50] Length = 118 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 4/108 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK TQ+E++ ++ + E G + S L IS D + Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 + +V + N+ ++ + ++ +Q +L + Sbjct: 69 NPDVS--LEDAGVNQMKMLYSSCPPEMRD--TLLHHTQETVKELTELS 112 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK+K ++Q E L + ++N E+G+ P R + +V L Sbjct: 5 DLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISL 64 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSS 193 D + D + + + K SS Sbjct: 65 DTLINPDVSLEDAGVNQMKMLYSS 88 >gi|154503786|ref|ZP_02040846.1| hypothetical protein RUMGNA_01610 [Ruminococcus gnavus ATCC 29149] gi|153795886|gb|EDN78306.1| hypothetical protein RUMGNA_01610 [Ruminococcus gnavus ATCC 29149] Length = 262 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 1/89 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +I+ R N ++ E+A SA+ +ENG+ + L N ++ +++ Sbjct: 2 KIGNQIRHRRTELNLSRGELANKIQVTPSAIANYENGVSYPKPDILVALMNALDVDANYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +K L P + LK Sbjct: 62 -YWNYLSNSTIQRLYRKVLSPEEKESILK 89 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ R + +S+ E + + S ++NYE G + P+ + ++ Sbjct: 1 MKIGNQIRHRRTELNLSRGELANKIQVTPSAIANYENGVSYPKPDILVALMNALDVDANY 60 Query: 172 IYF 174 +Y+ Sbjct: 61 LYW 63 >gi|331266049|ref|YP_004325679.1| transcriptional repressor, putative [Streptococcus oralis Uo5] gi|326682721|emb|CBZ00338.1| transcriptional repressor, putative [Streptococcus oralis Uo5] Length = 69 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLFLCQSICRCLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R ++ ++Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MAKNLKLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLFLCQSICRCLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 >gi|322392726|ref|ZP_08066186.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321144718|gb|EFX40119.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 228 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 10/103 (9%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQKE+A A + +E G+ S L ++ + Sbjct: 5 EKLKARRKELKLTQKEIADQLGISFQAYSAWERGVKEPSEEKVKQLEKILKVPKGYFTQI 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E++ K K + + ++Q E K + Sbjct: 65 EIVCLYNSLSNQGKE----------KVVVYARNLAQEEQAKKV 97 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ RK+ ++Q E LG+ S +E+G P + ++++++ K + Sbjct: 1 MYQPEKLKARRKELKLTQKEIADQLGISFQAYSAWERGVKEPSEEKVKQLEKILKVPKGY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|288549632|ref|ZP_05967658.2| DNA-binding protein [Enterobacter cancerogenus ATCC 35316] gi|288318084|gb|EFC57022.1| DNA-binding protein [Enterobacter cancerogenus ATCC 35316] Length = 183 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 1/77 (1%) Query: 101 EDVTNKKRLDP-YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 N +D + + LK++R+ +G S + G+ + L E+ + P + Sbjct: 1 MLFGNGGTMDMTQHLASTLKALRQARGWSLSMLAEKTGVSKAMLGQIERNESSPTVSTLW 60 Query: 160 KIKQVTKKHLDWIYFGD 176 KI + Sbjct: 61 KIATGLNVPFSAFITPE 77 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 9/80 (11%), Positives = 26/80 (32%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + + +K +R+A + +A ++ + E S ++ + + F Sbjct: 13 QHLASTLKALRQARGWSLSMLAEKTGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSA 72 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 E D + + Sbjct: 73 FITPEAESPAVYDPQQQAMV 92 >gi|311747857|ref|ZP_07721642.1| toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] gi|126575850|gb|EAZ80160.1| toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] Length = 203 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + K +G ++K +R N +Q E+A A V EN + L + Sbjct: 2 KTKMENKALGEKLKTLRLKNGFSQDELAESAGVSLRTVQRIENAEAVPRMDTIKRLFQIF 61 Query: 84 EISFDWIYDGEVIDRRYE 101 +S + + D + + Sbjct: 62 GMSPEEVLDWSQTEDKGY 79 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +++ A+G +LK++R G SQ E + G+ T+ E +P + +++ Q+ Sbjct: 4 KMENKALGEKLKTLRLKNGFSQDELAESAGVSLRTVQRIENAEAVPRMDTIKRLFQIFGM 63 Query: 168 HLDWIY 173 + + Sbjct: 64 SPEEVL 69 >gi|29377418|ref|NP_816572.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344885|gb|AAO82642.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 316 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI--Y 91 R+K++RK N T E++ S +N +EN L + Y +S ++ Sbjct: 2 NRLKELRKEKNITLVELSEELGIPRSTLNRYENEDSEPKQETWEKLADYYGVSTAYLMGI 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRK 123 + + KK Y L K IRK Sbjct: 62 SNQKVSEEKALTAAKKVYQVYLSDDDLGKEIRK 94 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY- 173 RLK +RK+K ++ +E + LG+P STL+ YE + P+ + K+ ++ Sbjct: 1 MNRLKELRKEKNITLVELSEELGIPRSTLNRYENEDSEPKQETWEKLADYYGVSTAYLMG 60 Query: 174 -FGDEVIVPKSIKRAKGNQSSKKSKKD 199 +V K++ AK S D Sbjct: 61 ISNQKVSEEKALTAAKKVYQVYLSDDD 87 >gi|75759185|ref|ZP_00739288.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899110|ref|ZP_04063382.1| hypothetical protein bthur0014_3380 [Bacillus thuringiensis IBL 4222] gi|228906175|ref|ZP_04070064.1| hypothetical protein bthur0013_3600 [Bacillus thuringiensis IBL 200] gi|228937680|ref|ZP_04100316.1| hypothetical protein bthur0008_3590 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228950943|ref|ZP_04113064.1| hypothetical protein bthur0006_3740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956851|ref|ZP_04118636.1| hypothetical protein bthur0005_3900 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228970568|ref|ZP_04131218.1| hypothetical protein bthur0003_3590 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977138|ref|ZP_04137539.1| hypothetical protein bthur0002_3570 [Bacillus thuringiensis Bt407] gi|229077745|ref|ZP_04210374.1| hypothetical protein bcere0023_4470 [Bacillus cereus Rock4-2] gi|229125885|ref|ZP_04254910.1| hypothetical protein bcere0015_3490 [Bacillus cereus BDRD-Cer4] gi|229148790|ref|ZP_04277039.1| hypothetical protein bcere0011_3610 [Bacillus cereus m1550] gi|74493347|gb|EAO56460.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228634678|gb|EEK91258.1| hypothetical protein bcere0011_3610 [Bacillus cereus m1550] gi|228657543|gb|EEL13356.1| hypothetical protein bcere0015_3490 [Bacillus cereus BDRD-Cer4] gi|228705567|gb|EEL57924.1| hypothetical protein bcere0023_4470 [Bacillus cereus Rock4-2] gi|228782586|gb|EEM30763.1| hypothetical protein bthur0002_3570 [Bacillus thuringiensis Bt407] gi|228789155|gb|EEM37084.1| hypothetical protein bthur0003_3590 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228802892|gb|EEM49725.1| hypothetical protein bthur0005_3900 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808670|gb|EEM55168.1| hypothetical protein bthur0006_3740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821967|gb|EEM67959.1| hypothetical protein bthur0008_3590 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853584|gb|EEM98352.1| hypothetical protein bthur0013_3600 [Bacillus thuringiensis IBL 200] gi|228860551|gb|EEN04939.1| hypothetical protein bthur0014_3380 [Bacillus thuringiensis IBL 4222] Length = 83 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I ++R NN +Q +A +N EN S+ A L + D ++ Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLFLY 81 Query: 94 EV 95 + Sbjct: 82 KQ 83 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 21 KNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|328883125|emb|CCA56364.1| putative DNA-binding protein [Streptomyces venezuelae ATCC 10712] Length = 286 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+A N T +++A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRKLREAKNMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDE 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RMVDSLM--QMAKDSRQQGWWHAFGD 94 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ K M+ + + L + S +S E GR + R + V + Sbjct: 16 QELRKLREAKNMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV-------E 68 Query: 176 DEVIVPKSIKRAKGNQ 191 DE +V ++ AK ++ Sbjct: 69 DERMVDSLMQMAKDSR 84 >gi|257879532|ref|ZP_05659185.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257883466|ref|ZP_05663119.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|294622463|ref|ZP_06701485.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|257813760|gb|EEV42518.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257819124|gb|EEV46452.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|291598010|gb|EFF29120.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] Length = 234 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +K +R+ N Q+E+A + S+++ +E G + ++ + + + D + Sbjct: 2 FAENLKFLREKYNIDQQELAEKLGRKSSSSISEWEKGKYTPKLKTLNEIAKIFNVDIDDL 61 Query: 91 YDGEVIDRRYEDV 103 + ++ Sbjct: 62 MNIDLSISNQIYN 74 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK +R+ + Q E + LG +S++S +E+G+ P++K +I ++ +D Sbjct: 1 MFAENLKFLREKYNIDQQELAEKLGRKSSSSISEWEKGKYTPKLKTLNEIAKIFNVDIDD 60 Query: 172 IYFGD 176 + D Sbjct: 61 LMNID 65 >gi|251779846|ref|ZP_04822766.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084161|gb|EES50051.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 127 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 39/87 (44%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +I++ + N +QK++A N E+ ++ + +G+ + + ++ D+ Sbjct: 11 KTIGQKIEERLQELNLSQKDLADRVNVTEATISRYISGVRNPRGEILSRIALTLRLTTDY 70 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + I++ E NKK D Sbjct: 71 LLGNTSIEKNNESNINKKYNDISKAFE 97 Score = 44.6 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ ++ +SQ + + + +T+S Y G P + +I + D++ Sbjct: 15 QKIEERLQELNLSQKDLADRVNVTEATISRYISGVRNPRGEILSRIALTLRLTTDYLLG- 73 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 SI++ + +KK K Sbjct: 74 -----NTSIEKNNESNINKKYNDISK 94 >gi|242371994|ref|ZP_04817568.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242350301|gb|EES41902.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 79 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K R + +SQ+ + +G+ T++ E + P +K I + L+ +++ Sbjct: 16 NKVKQFRAHQKISQLSLARAVGVSRQTINMIENDKYNPSLKLCINIAKKLNVTLNDLFWE 75 Query: 176 DE 177 D+ Sbjct: 76 DD 77 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 27/64 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R +Q +A +N+ EN + S++ + + + ++ + ++ Sbjct: 16 NKVKQFRAHQKISQLSLARAVGVSRQTINMIENDKYNPSLKLCINIAKKLNVTLNDLFWE 75 Query: 94 EVID 97 + D Sbjct: 76 DDHD 79 >gi|260589352|ref|ZP_05855265.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260540433|gb|EEX21002.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 203 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 39/101 (38%), Gaps = 2/101 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + +G RI+ RK Q E+A + + +E+G SI + Sbjct: 1 MMSNEKLHNNQIGLRIRTARKEKGINQTELANLLGKSLRTIQKYESGEIEVSIAMLNEIA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + + E++++ ++ ++K + Sbjct: 61 KVLDCESTYLIGYDAERKPLENLSD--IMNFLFQLDKIKEL 99 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 36/77 (46%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + ++L IG R+++ RK+KG++Q E LLG T+ YE G I +I +V Sbjct: 3 SNEKLHNNQIGLRIRTARKEKGINQTELANLLGKSLRTIQKYESGEIEVSIAMLNEIAKV 62 Query: 165 TKKHLDWIYFGDEVIVP 181 ++ D P Sbjct: 63 LDCESTYLIGYDAERKP 79 >gi|190015615|ref|YP_001967308.1| DNA-binding protein [Bacillus cereus] gi|208702197|ref|YP_002267329.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217956829|ref|YP_002335923.1| DNA-binding protein [Bacillus cereus AH187] gi|229142393|ref|ZP_04270907.1| hypothetical protein bcere0013_54700 [Bacillus cereus BDRD-ST26] gi|116584522|gb|ABK00639.1| DNA-binding protein [Bacillus cereus] gi|208658052|gb|ACI30422.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217068601|gb|ACJ82849.1| DNA-binding protein [Bacillus cereus AH187] gi|228641058|gb|EEK97375.1| hypothetical protein bcere0013_54700 [Bacillus cereus BDRD-ST26] Length = 108 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 27/82 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ ++RK TQ +++ N + +E G + + + I D ++ Sbjct: 4 LSKRLAELRKKRGYTQADISHRLNIARTTYANWEYGKADPDADSIMRIAELHNIFIDELF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + D A Sbjct: 64 GRNNPLESKLESIKVALADIPA 85 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK +G +Q + L + +T +N+E G+ P+ +I ++ +D Sbjct: 1 MSHLSKRLAELRKKRGYTQADISHRLNIARTTYANWEYGKADPDADSIMRIAELHNIFID 60 Query: 171 WIYFGDEVIVPK 182 ++ + + K Sbjct: 61 ELFGRNNPLESK 72 >gi|99035917|ref|ZP_01314965.1| hypothetical protein Wendoof_01000195 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 306 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 3/99 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG ++K R TQK++A + +E G SI + +S + Sbjct: 12 EVGEKVKSWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAIAGALSVSITDL 71 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGM 127 ++ + L+ ++ + +R+ + Sbjct: 72 ITA-SKEKIGFKNEEGEILNLVREYKKINDQELRRMFCL 109 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 I ++ + VG +IK+ R TQK++A N ++ +E G +T + + Sbjct: 155 IEEKVGSIYCQVGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRVATPLGKLYEIA 214 Query: 81 NEYEISFDWIYDGEVIDRRYEDV 103 IS + E R E+ Sbjct: 215 EALSISITDLLTEEDEGSRVENE 237 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 7/117 (5%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 +S D I + E + K +G ++K R + +Q + + + + Sbjct: 137 GVSVD-IVAKTIGLPADECIEEKVGSIYCQVGKKIKEWRLVREYTQKDLAEKMNTTRDEI 195 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD------EVIVPKSIKRAKGNQSSK 194 SNYEQGR + +I + + + + E +P IK K +S + Sbjct: 196 SNYEQGRVATPLGKLYEIAEALSISITDLLTEEDEGSRVENELPDLIKEYKEIESQE 252 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +++ Y +G ++KS R ++G +Q + + +G+ + YE+G I+ I Sbjct: 6 EKILDYEVGEKVKSWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAIAGALS 65 Query: 167 KHLDWIYF 174 + + Sbjct: 66 VSITDLIT 73 >gi|332298496|ref|YP_004440418.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181599|gb|AEE17287.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 106 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 29/97 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + VG I+ +R+ TQ +A + + E+G S+ L ++ Sbjct: 1 MEKLKIIVGDNIRRLRREYGWTQAYVAENLGVTAPFLTMIESGQRGMSLDLIEKLSELFD 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + L +K I Sbjct: 61 VPAASFFVQYSDTSAGVSRQELAALKKRLTLKMIKVI 97 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 24/57 (42%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R++ G +Q + LG+ L+ E G+ + K+ ++ + Sbjct: 11 NIRRLRREYGWTQAYVAENLGVTAPFLTMIESGQRGMSLDLIEKLSELFDVPAASFF 67 >gi|297162420|gb|ADI12132.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 196 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 27/67 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTR++ +R T +++A A S ++ E G + ++ + + + + Sbjct: 7 LGTRVQGLRHERGLTLQQLADAAEVSVSMLSSVERGQKAPTVLVLARIADGLGVPLAELV 66 Query: 92 DGEVIDR 98 R Sbjct: 67 AEPEDSR 73 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 LD +G R++ +R ++G++ + + S LS+ E+G+ P + +I Sbjct: 1 MLDLLTLGTRVQGLRHERGLTLQQLADAAEVSVSMLSSVERGQKAPTVLVLARIADGLGV 60 Query: 168 HLDWIYFGDEV 178 L + E Sbjct: 61 PLAELVAEPED 71 >gi|288904825|ref|YP_003430047.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288731551|emb|CBI13106.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 65 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+++ R +Q +A VNL EN + S+ + L + + ++ Sbjct: 2 NRVREFRLNLGISQLALAKQIGVARQTVNLIENNKYNPSLDLCIKLAEALQTDLNTLF 59 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ R + G+SQ+ K +G+ T++ E + P + K+ + + L+ +++ Sbjct: 1 MNRVREFRLNLGISQLALAKQIGVARQTVNLIENNKYNPSLDLCIKLAEALQTDLNTLFW 60 Query: 175 GD 176 + Sbjct: 61 EN 62 >gi|229084745|ref|ZP_04217007.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44] gi|228698561|gb|EEL51284.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44] Length = 404 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ YL ++ E ++ Sbjct: 4 LGEKIKALRKEKRLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + ++ + Sbjct: 63 EEDNEEVTKLIPKMEQAIKNNQFEE 87 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + + + ++ Sbjct: 6 EKIKALRKEKRLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D V K I + + + + ++ + P Sbjct: 65 DNEEVTKLIPKMEQAIKNNQFEEVYHTLLP 94 >gi|229176275|ref|ZP_04303750.1| hypothetical protein bcere0006_53300 [Bacillus cereus MM3] gi|228607182|gb|EEK64529.1| hypothetical protein bcere0006_53300 [Bacillus cereus MM3] Length = 204 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 20 MEEIQLILAKNLKTIREKEKMSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKVVLRNDVQVL 104 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + MS + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKTIREKEKMSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 88 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 89 PQPDTKVVLRN 99 >gi|225017045|ref|ZP_03706237.1| hypothetical protein CLOSTMETH_00970 [Clostridium methylpentosum DSM 5476] gi|224950212|gb|EEG31421.1| hypothetical protein CLOSTMETH_00970 [Clostridium methylpentosum DSM 5476] Length = 102 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 36/69 (52%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P + Y +G +++ +R+A + Q ++A +AV+ +E+ + + S+ L Sbjct: 2 PADKSYLYGLGDKLRILREAKHLKQSQVAKYLGISTTAVSEYESEIKTPSLEVFARLVAF 61 Query: 83 YEISFDWIY 91 Y+IS D++ Sbjct: 62 YDISADYLI 70 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G +L+ +R+ K + Q + K LG+ + +S YE P ++ ++ D+ Sbjct: 9 YGLGDKLRILREAKHLKQSQVAKYLGISTTAVSEYESEIKTPSLEVFARLVAFYDISADY 68 Query: 172 IY 173 + Sbjct: 69 LI 70 >gi|168206392|ref|ZP_02632397.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170662087|gb|EDT14770.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 330 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RK N +Q E+A + + +E +I + L S D + Sbjct: 8 NLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNRSIDSL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 D+ N I +L Sbjct: 68 LGLNHSTENTNDLNNSDLSKKIFILNKL 95 >gi|206974554|ref|ZP_03235470.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222096804|ref|YP_002530861.1| transcriptional regulator [Bacillus cereus Q1] gi|206747197|gb|EDZ58588.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221240862|gb|ACM13572.1| transcriptional regulator [Bacillus cereus Q1] Length = 67 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK+ R N TQ+++A ++ E G + S++ A + + D ++ E Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 95 VI 96 Sbjct: 66 DK 67 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+S+ E+G+ P ++ A I + +D Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60 Query: 172 IYFGDE 177 ++ ++ Sbjct: 61 VFIFED 66 >gi|190015751|ref|YP_001967756.1| probable transcriptional regulator [Clostridium perfringens] gi|86450173|gb|ABC96282.1| probable transcriptional regulator [Clostridium perfringens] Length = 344 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 31/88 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RK N +Q E+A + + +E +I + L S D + Sbjct: 8 NLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLVQLSKLMNRSIDSL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + D+ N I +L Sbjct: 68 LGLNHPNETTNDLNNSDLSKKIFILNKL 95 >gi|289606595|emb|CBI61118.1| unnamed protein product [Sordaria macrospora] Length = 67 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++++R +Q+ +A ++N E G S+ A + +E+S + Sbjct: 3 NHLRELRATRGWSQQHLADQLEVSRQSINAIETGRYDPSLPLAFKIAELFELSIE 57 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+ +R +G SQ L + +++ E GR P + A KI ++ + ++ ++ Sbjct: 1 MINHLRELRATRGWSQQHLADQLEVSRQSINAIETGRYDPSLPLAFKIAELFELSIEAVF 60 >gi|268610909|ref|ZP_06144636.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 73 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+++R+ + TQ+ MA + +E G+ + + + S D++ Sbjct: 4 ERIRNLREDMDYTQQHMADLLFINRRTYSSYETGVRGIPNEVLSQIADIFNTSTDYLLGR 63 Query: 94 EVIDRRYEDV 103 + Y Sbjct: 64 TDEKKPYPKK 73 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++++R+D +Q LL + T S+YE G + +I + D++ Sbjct: 1 MIYERIRNLREDMDYTQQHMADLLFINRRTYSSYETGVRGIPNEVLSQIADIFNTSTDYL 60 Query: 173 YFGDEVIVPKSIK 185 + P K Sbjct: 61 LGRTDEKKPYPKK 73 >gi|139439103|ref|ZP_01772555.1| Hypothetical protein COLAER_01565 [Collinsella aerofaciens ATCC 25986] gi|133775450|gb|EBA39270.1| Hypothetical protein COLAER_01565 [Collinsella aerofaciens ATCC 25986] Length = 127 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 10/109 (9%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K RK N +Q ++A N V +E G I + + Sbjct: 4 KLKQARKENGYSQADLADALNVDIKTVGNWERGKTLPDIEQLWKCAKILHTDPNDLLGWY 63 Query: 95 VIDRRYEDVTN----------KKRLDPYAIGARLKSIRKDKGMSQIEFG 133 ++ L++ R +SQ + Sbjct: 64 EEHPEDRPTVPAGAEGELIACYRQSTEKRRSKILETARDQAELSQAQAA 112 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK RK+ G SQ + L + T+ N+E+G+T+P+I+ K ++ + + Sbjct: 5 LKQARKENGYSQADLADALNVDIKTVGNWERGKTLPDIEQLWKCAKILHTDPNDLL 60 >gi|90023457|ref|YP_529284.1| XRE family transcriptional regulator [Saccharophagus degradans 2-40] gi|89953057|gb|ABD83072.1| transcriptional regulator, XRE family [Saccharophagus degradans 2-40] Length = 72 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 109 LDPYAIGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + I +++ R G M+Q + +L+G+ T+ E R P ++ A KI Q Sbjct: 1 MPKTNIVNTIRTQRFMAGEMTQQQLAELVGVTRQTIIAIEANRYAPSLELAFKIAQAFNL 60 Query: 168 HLDWIYFGDE 177 L+ ++ E Sbjct: 61 PLEEVFLPPE 70 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 1/62 (1%) Query: 31 DVGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ I+ R TQ+++A + E + S+ A + + + + Sbjct: 5 NIVNTIRTQRFMAGEMTQQQLAELVGVTRQTIIAIEANRYAPSLELAFKIAQAFNLPLEE 64 Query: 90 IY 91 ++ Sbjct: 65 VF 66 >gi|332140175|ref|YP_004425913.1| transcriptional regulator, HTH_3 family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550197|gb|AEA96915.1| transcriptional regulator, HTH_3 family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 187 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 11/121 (9%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K + ++ +R + + A ++ + E G S +I + SF Sbjct: 13 KSIAQHLQSVRTGRGLSLDKTAKLTGVSKAMLGQIERGESSPTIATLWKIATGLACSFSS 72 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARL-----------KSIRKDKGMSQIEFGKLLGM 138 G+ + +K DP L + Q +G+ Sbjct: 73 FLSGDETAPTSQHADDKFANDPNVTIKTLFPFNAVTQFEMFELCLKDFHEQHSSAHQIGV 132 Query: 139 P 139 Sbjct: 133 T 133 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 30/83 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+S+R +G+S + KL G+ + L E+G + P I KI G Sbjct: 17 QHLQSVRTGRGLSLDKTAKLTGVSKAMLGQIERGESSPTIATLWKIATGLACSFSSFLSG 76 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 DE K + K Sbjct: 77 DETAPTSQHADDKFANDPNVTIK 99 >gi|109900170|ref|YP_663425.1| XRE family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|332308195|ref|YP_004436046.1| transcriptional regulator, XRE family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109702451|gb|ABG42371.1| transcriptional regulator, XRE family [Pseudoalteromonas atlantica T6c] gi|332175524|gb|AEE24778.1| transcriptional regulator, XRE family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 70 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 109 LDPYAIGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + I +++ +R M+Q E +L+G+ T+ E+ + P ++ A KI +V + Sbjct: 1 MANVPIKNKIRELRFFADEMTQKELAELVGVTRQTIMAIEKSKYSPTLEVAFKIAEVFGQ 60 Query: 168 HLDWIYFGD 176 L+ ++ + Sbjct: 61 SLEEVFQYE 69 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +I+++R + TQKE+A + E S ++ A + + S + + Sbjct: 6 IKNKIRELRFFADEMTQKELAELVGVTRQTIMAIEKSKYSPTLEVAFKIAEVFGQSLEEV 65 Query: 91 YDGE 94 + E Sbjct: 66 FQYE 69 >gi|329120606|ref|ZP_08249269.1| XRE family transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327460830|gb|EGF07164.1| XRE family transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 69 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ RK K +SQ L+ + T++ E P + ++ +V L+ +++ Sbjct: 1 MNRVRQFRKQKQLSQQALADLVEVSRQTVNMIENQDYNPTLSLCIRLAKVLDTDLNALFW 60 Query: 175 GDEV 178 +E Sbjct: 61 EEED 64 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ RK +Q+ +A VN+ EN + ++ + L + + ++ Sbjct: 2 NRVRQFRKQKQLSQQALADLVEVSRQTVNMIENQDYNPTLSLCIRLAKVLDTDLNALFWE 61 Query: 94 EVIDRRYE 101 E ++ Sbjct: 62 EEDEQIQP 69 >gi|317508397|ref|ZP_07966068.1| hypothetical protein HMPREF9336_02440 [Segniliparus rugosus ATCC BAA-974] gi|316253305|gb|EFV12704.1| hypothetical protein HMPREF9336_02440 [Segniliparus rugosus ATCC BAA-974] Length = 86 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 22/71 (30%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R T E+ + + S + ENG ++ L + + Sbjct: 11 IAEELKALRSRRGFTLDELELASGVSRSTIWRIENGKSDPNVEQMTRLSRALGLDLPRLV 70 Query: 92 DGEVIDRRYED 102 + E Sbjct: 71 QRVFDNYVEES 81 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 LK++R +G + E G+ ST+ E G++ P ++ ++ + L Sbjct: 13 EELKALRSRRGFTLDELELASGVSRSTIWRIENGKSDPNVEQMTRLSRALGLDL 66 >gi|291458798|ref|ZP_06598188.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418594|gb|EFE92313.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 97 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 ++ E + + +Q+ E Q +D+ + RK TQ E++ ++ ++ Sbjct: 1 MSDLQELTNELMQDAAFRKEYEALQPERDITMSLIRARKEAGLTQAELSEKTGISQADIS 60 Query: 63 LFENGMCSTSIRYALYLRNEYEISF 87 ENG + S+ + + Sbjct: 61 RLENGTRNPSLALLNRIAEAVNSTL 85 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 I L RK+ G++Q E + G+ + +S E G P + +I + L Sbjct: 30 ITMSLIRARKEAGLTQAELSEKTGISQADISRLENGTRNPSLALLNRIAEAVNSTL 85 >gi|257463340|ref|ZP_05627736.1| putative prophage repressor [Fusobacterium sp. D12] gi|317060917|ref|ZP_07925402.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] gi|313686593|gb|EFS23428.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] Length = 198 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 32/65 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G ++K +R++ +Q+E++ + ++ + +ENG + ++ + SF+ Sbjct: 3 DYGKKLKLLRESKGLSQEELSDKLSVTKTTIGNYENGRRALTLEKLAEILEALNSSFNEF 62 Query: 91 YDGEV 95 + + Sbjct: 63 FSLKE 67 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +LK +R+ KG+SQ E L + +T+ NYE GR ++ +I + + Sbjct: 1 MLDYGKKLKLLRESKGLSQEELSDKLSVTKTTIGNYENGRRALTLEKLAEILEALNSSFN 60 Query: 171 WIYFGDE 177 + E Sbjct: 61 EFFSLKE 67 >gi|218460197|ref|ZP_03500288.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 215 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ IR A TQ MA S +NL E +++ L L Y + + + Sbjct: 9 GPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ IR ++Q + L + S L+ E+ + ++ K+ V + L+ + Sbjct: 12 LRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 >gi|198276651|ref|ZP_03209182.1| hypothetical protein BACPLE_02847 [Bacteroides plebeius DSM 17135] gi|198270176|gb|EDY94446.1| hypothetical protein BACPLE_02847 [Bacteroides plebeius DSM 17135] Length = 192 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 29/97 (29%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R + +E+A A V+ E + S+ + + + Sbjct: 7 IGEKIKSLRTNQEISIQELAERAGLTVEQVSRIEENIDIPSLAPLIKIARALGVRLGTFL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + + + D R+ Sbjct: 67 DDQTSEAGPVICRKGEADDTIGFSNNATHARQHMHYH 103 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++KS+R ++ +S E + G+ +S E+ IP + P KI + L Sbjct: 9 EKIKSLRTNQEISIQELAERAGLTVEQVSRIEENIDIPSLAPLIKIARALGVRLGTFL 66 >gi|190894160|ref|YP_001984454.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190699821|gb|ACE93904.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 170 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 41/122 (33%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 ++ + TS + E + + + + VG +I+ R +N + ++ G V Sbjct: 13 YVAAQVRTSRPAQAEQSNLARELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQV 72 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +E+G S L N +I ++G + +D Sbjct: 73 QKYESGKNRVSASMLYELANCLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEG 132 Query: 122 RK 123 R+ Sbjct: 133 RR 134 Score = 41.5 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ R +S + G +G+ + YE G+ ++ K + + G Sbjct: 45 QQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEG 104 >gi|89896340|ref|YP_519827.1| hypothetical protein DSY3594 [Desulfitobacterium hafniense Y51] gi|89335788|dbj|BAE85383.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 201 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I +RK TQ+++A N ++ +E G+ + L + Sbjct: 8 KVGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLGCPDVTLWSGLSAVLGADIQKM 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 +G++ + K L Sbjct: 68 LEGKLDPNSPDVGKIDKTLFYVCPAC 93 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D +G + +RK+KG++Q + +L + N T+S +E+G P++ + V Sbjct: 1 MITMDCAKVGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLGCPDVTLWSGLSAVL 60 Query: 166 KKHLDWIYFGD 176 + + G Sbjct: 61 GADIQKMLEGK 71 >gi|219667836|ref|YP_002458271.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538096|gb|ACL19835.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 198 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I +RK TQ+++A N ++ +E G+ + L + Sbjct: 5 KVGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLGCPDVTLWSGLSAVLGADIQKM 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 +G++ + K L Sbjct: 65 LEGKLDPNSPDVGKIDKTLFYVCPAC 90 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G + +RK+KG++Q + +L + N T+S +E+G P++ + V Sbjct: 1 MDCAKVGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLGCPDVTLWSGLSAVLGAD 60 Query: 169 LDWIYFGD 176 + + G Sbjct: 61 IQKMLEGK 68 >gi|303246058|ref|ZP_07332339.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492454|gb|EFL52325.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +IK IR+A + TQ+++A + + E G + S+ L +I ++ Sbjct: 8 FGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLAKALDIPMAELF 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 E E++ +R M+Q Sbjct: 68 SLEEFRLAPEELRAILIRQIETADED--RLRTFFSMAQ 103 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 40/87 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G ++KSIR+ + ++Q + L G+ + E+GR P + ++ + + ++ Sbjct: 8 FGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLAKALDIPMAELF 67 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDK 200 +E + RA + + + +D+ Sbjct: 68 SLEEFRLAPEELRAILIRQIETADEDR 94 >gi|302561872|ref|ZP_07314214.1| cro/CI family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302479490|gb|EFL42583.1| cro/CI family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 200 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 24/72 (33%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ + + +K R T +A A + E + SI + + + Sbjct: 12 SDLDLLTQSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSIGTVVKIGDA 71 Query: 83 YEISFDWIYDGE 94 +S + D E Sbjct: 72 LGVSVTTLLDYE 83 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 2/79 (2%) Query: 97 DRRYEDVTNKKRLD--PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 R + N LD ++ +K R ++G + G+ L EQ RT P Sbjct: 2 SSRILNGWNVSDLDLLTQSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPS 61 Query: 155 IKPARKIKQVTKKHLDWIY 173 I KI + + Sbjct: 62 IGTVVKIGDALGVSVTTLL 80 >gi|259506603|ref|ZP_05749505.1| transcriptional regulator [Corynebacterium efficiens YS-314] gi|259165801|gb|EEW50355.1| transcriptional regulator [Corynebacterium efficiens YS-314] Length = 138 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 6/89 (6%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS------TSIRYALYLRN 81 Y +G R+++IRK +Q+E+A N +A++ E + + L Sbjct: 19 YGHTLGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSW 78 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 ++ + + V +D Sbjct: 79 ALDVPPAALLPAVGEKPQGICVDESLPVD 107 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI------PEIKPARKIKQVTKKHL 169 AR++ IRK +G SQ E +++ M + +SN E+ P + K+ Sbjct: 25 ARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWALDVPP 84 Query: 170 DWIY 173 + Sbjct: 85 AALL 88 >gi|229109238|ref|ZP_04238837.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|228674248|gb|EEL29493.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] Length = 404 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ +A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTALA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + ++ + K++ Sbjct: 63 EEDEGEIVELIQKMEQLIKANKCDEVYKTL 92 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 DE + + I++ + + K + K+ P Sbjct: 65 DEGEIVELIQKMEQLIKANKCDEVYKTLLP 94 >gi|227549950|ref|ZP_03979999.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM 44291] gi|227077966|gb|EEI15929.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM 44291] Length = 143 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 7/67 (10%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS------TSIRYALYLRNEYEI 85 + R++ +R+ +Q+ +A A S ++ E + ++ + + + Sbjct: 17 LAERLRALREMRGLSQRRLAELAGVSRSLISNLERNQYNTARSADPTLSTVYRIAHALHV 76 Query: 86 SFDWIYD 92 + Sbjct: 77 PPVALLP 83 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI------PEIKPARKIKQVT 165 + + RL+++R+ +G+SQ +L G+ S +SN E+ + P + +I Sbjct: 15 FVLAERLRALREMRGLSQRRLAELAGVSRSLISNLERNQYNTARSADPTLSTVYRIAHAL 74 Query: 166 KKHLDWIY 173 + Sbjct: 75 HVPPVALL 82 >gi|240146357|ref|ZP_04744958.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] gi|257201519|gb|EEU99803.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] Length = 113 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 31/88 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ R +Q+ +A ++ E G S+ + + N + + D + Sbjct: 8 IGMRIKERRTKKEWSQEMLASTVGNSNPHMSNIEWGKTKVSLATLIDIANALDTTLDALI 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 ++ + + ++ Sbjct: 68 CDNLVKGKAVFDEEISQELEECSEEDIR 95 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +LD AIG R+K R K SQ +G N +SN E G+T + I Sbjct: 1 MKLDYCAIGMRIKERRTKKEWSQEMLASTVGNSNPHMSNIEWGKTKVSLATLIDIANALD 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 LD + + V + + S++D + Sbjct: 61 TTLDALICDNLVKGKAVFDEEISQELEECSEEDIR 95 >gi|197285559|ref|YP_002151431.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194683046|emb|CAR43543.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 186 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 25/74 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I RK + E+A A +S ++ E G + SI + I F + Sbjct: 11 ISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQLI 70 Query: 92 DGEVIDRRYEDVTN 105 + + + Sbjct: 71 SSPKPEVKVIRKGD 84 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + RK G+S E + G+ STLS E G+ P I+ I + Sbjct: 13 QSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQLISS 72 Query: 176 DEVIVPKSIKRAKGNQSSKKS 196 + V K I++ G + S + Sbjct: 73 PKPEV-KVIRKGDGFKISAEK 92 >gi|149007308|ref|ZP_01830966.1| hypothetical protein CGSSp18BS74_00606 [Streptococcus pneumoniae SP18-BS74] gi|225859187|ref|YP_002740697.1| hypothetical protein SP70585_1461 [Streptococcus pneumoniae 70585] gi|307127009|ref|YP_003879040.1| hypothetical protein SP670_0875 [Streptococcus pneumoniae 670-6B] gi|147761112|gb|EDK68080.1| hypothetical protein CGSSp18BS74_00606 [Streptococcus pneumoniae SP18-BS74] gi|225720333|gb|ACO16187.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|306484071|gb|ADM90940.1| conserved domain protein [Streptococcus pneumoniae 670-6B] gi|332074745|gb|EGI85219.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 69 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVELDLTQGQLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R + ++Q + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MVKNLKLKLARVELDLTQGQLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 >gi|222056285|ref|YP_002538647.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221565574|gb|ACM21546.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 126 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 35/92 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I+ R + +Q+E+A + +E+G ++ + + + + Sbjct: 11 EIGAAIRRRRHELSLSQEELAARLEVSYQQIQRYESGKNKLNVENIQLVADALSVPVGYF 70 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + + E + + A+ +SIR Sbjct: 71 FQVVHQETVIESTIEQPCPKEQELLAQFRSIR 102 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +K + IGA ++ R + +SQ E L + + YE G+ ++ + + Sbjct: 4 EKIMSSSEIGAAIRRRRHELSLSQEELAARLEVSYQQIQRYESGKNKLNVENIQLVADAL 63 Query: 166 KKHLDWIY 173 + + + Sbjct: 64 SVPVGYFF 71 >gi|25027261|ref|NP_737315.1| hypothetical protein CE0705 [Corynebacterium efficiens YS-314] gi|23492542|dbj|BAC17515.1| hypothetical protein [Corynebacterium efficiens YS-314] Length = 169 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 6/89 (6%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS------TSIRYALYLRN 81 Y +G R+++IRK +Q+E+A N +A++ E + + L Sbjct: 50 YGHTLGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSW 109 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 ++ + + V +D Sbjct: 110 ALDVPPAALLPAVGEKPQGICVDESLPVD 138 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI------PEIKPARKIKQVTKKHL 169 AR++ IRK +G SQ E +++ M + +SN E+ P + K+ Sbjct: 56 ARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWALDVPP 115 Query: 170 DWIY 173 + Sbjct: 116 AALL 119 >gi|150017576|ref|YP_001309830.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904041|gb|ABR34874.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 343 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I+ RK N TQ+++A N AVN +ENG+ I L +I + + Sbjct: 3 ISEVIRHYRKKENLTQEQVADYLNVSTPAVNKWENGVSYPDITLLPPLARVLKIDVNTLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E K + A +K Sbjct: 63 AFNEELTDTEVKKLTKEVGETASKEGIKKA 92 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 39/92 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ RK + ++Q + L + ++ +E G + P+I + +V K ++ Sbjct: 1 MMISEVIRHYRKKENLTQEQVADYLNVSTPAVNKWENGVSYPDITLLPPLARVLKIDVNT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + +E + +K+ SK+ K + Sbjct: 61 LLAFNEELTDTEVKKLTKEVGETASKEGIKKA 92 >gi|319757788|gb|ADV69730.1| phage repressor protein [Streptococcus suis JS14] Length = 229 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 30/86 (34%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K+ R Q E+A ++ + +E+G + + + ++ + Sbjct: 4 GIRLKEKRIERKFNQSEIAYKLGINRASYSKWESGKSIPNQKNLSAIAKILDVPVTYFES 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL 118 I Y +T +L L Sbjct: 64 EYNIVNNYLQLTPGNQLKAEDYVEEL 89 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK R ++ +Q E LG+ ++ S +E G++IP K I ++ + + Sbjct: 1 MFSGIRLKEKRIERKFNQSEIAYKLGINRASYSKWESGKSIPNQKNLSAIAKILDVPVTY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + + IV ++ GNQ + Sbjct: 61 -FESEYNIVNNYLQLTPGNQLKAE 83 >gi|312888017|ref|ZP_07747601.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299498|gb|EFQ76583.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 242 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 36/82 (43%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 K++ + +I+ P + +IK+ R+ N T ++AI AN + ++ EN Sbjct: 38 KTIFSHAIILQPMEEDILIQISNKIKERRREKNITVHDLAIKANVSKGLISQIENSRTIP 97 Query: 72 SIRYALYLRNEYEISFDWIYDG 93 S+ + + +I + + Sbjct: 98 SLIVLIDIIRSLDIDLNVFFKD 119 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K R++K ++ + + +S E RTIP + I + L+ Sbjct: 56 IQISNKIKERRREKNITVHDLAIKANVSKGLISQIENSRTIPSLIVLIDIIRSLDIDLNV 115 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + ++ S + + +K+ ++ Sbjct: 116 FF--KDIHSKSSSTPIIVRRKEQYEHFEKEDAH 146 >gi|303241220|ref|ZP_07327727.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302591231|gb|EFL60972.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 71 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I+ R TQK++A + + A++ +E G + I L L + I + Sbjct: 5 KVGNIIRKTRLEQKMTQKQLADKLDISDKAISKWERGSGNPDISLILKLSDILGIDVREL 64 Query: 91 YDGEVID 97 Sbjct: 65 LKAYEKP 71 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 29/66 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G ++ R ++ M+Q + L + + +S +E+G P+I K+ + Sbjct: 1 MQNDKVGNIIRKTRLEQKMTQKQLADKLDISDKAISKWERGSGNPDISLILKLSDILGID 60 Query: 169 LDWIYF 174 + + Sbjct: 61 VRELLK 66 >gi|260655689|ref|ZP_05861162.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260629606|gb|EEX47800.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 123 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ +RKA+ TQ+++A + E+ S S++ L + E+ + Sbjct: 3 FGLRLRSLRKAHQLTQQQLAEVTEVSRIYIQALESNRRSPSMKLLHKLADALEVDPADLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +R + P + + Sbjct: 63 EEFPSERSGRLQLEELFQRPEELEIWYR 90 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G RL+S+RK ++Q + ++ + + E R P +K K+ + Sbjct: 1 MSFGLRLRSLRKAHQLTQQQLAEVTEVSRIYIQALESNRRSPSMKLLHKLADALEVDPAD 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|229173521|ref|ZP_04301064.1| transcriptional regulator/TPR domain protein [Bacillus cereus MM3] gi|228609903|gb|EEK67182.1| transcriptional regulator/TPR domain protein [Bacillus cereus MM3] Length = 440 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI+ +R TQ E+ G + ++ E+G S + + + E+ D++ Sbjct: 19 EIGERIRHVRMHKGLTQGELVSGI-CSITYLSRIESGKIKPSSSFIKKVSKKLEVKSDYL 77 Query: 91 YDG--EVIDRRYEDVTNKKRLDPYAIGARL 118 +G E I + NK + D A L Sbjct: 78 INGNYEAIKLTIFKICNKYKTDKSITEADL 107 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 3/101 (2%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPA 158 + IG R++ +R KG++Q E + G+ + LS E G+ P Sbjct: 6 KSMKWLSRGSRKMEIGERIRHVRMHKGLTQGEL--VSGICSITYLSRIESGKIKPSSSFI 63 Query: 159 RKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 +K+ + + D++ G+ + +I + + KS + Sbjct: 64 KKVSKKLEVKSDYLINGNYEAIKLTIFKICNKYKTDKSITE 104 >gi|227505625|ref|ZP_03935674.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227197778|gb|EEI77826.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length = 468 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 38/111 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R+ + +Q +A S VN E+ + ++ L + + + + Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFFS 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + E + + L+ + + L+ + Sbjct: 66 RDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDIHRRY 116 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +R+++ +SQ LG+ S ++ E + +I +V Sbjct: 1 MSKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + D+ + I+ Sbjct: 61 ATFFSRDDDSRLLAEIQD 78 >gi|110681030|ref|YP_684037.1| helix-turn-helix domain-containing protein [Roseobacter denitrificans OCh 114] gi|109457146|gb|ABG33351.1| helix-turn-helix domain protein, putative [Roseobacter denitrificans OCh 114] Length = 135 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 35/104 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R+ + TQ E+A + + +EN + + +S W+ Sbjct: 15 FGDRLAAARETSEMTQAELARRLGVRVATLRSWENDLSEPRANRLSMMAGLLNVSMMWLI 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 +G+ + ++ +R D + G+L Sbjct: 75 NGQGEGLDAPMEERALPASASEVLNEMRELRTDMIARVEQMGRL 118 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G RL + R+ M+Q E + LG+ +TL ++E + P + + + Sbjct: 11 DTATFGDRLAAARETSEMTQAELARRLGVRVATLRSWENDLSEPRANRLSMMAGLLNVSM 70 Query: 170 DWIYFGDEVIVPKSIKR 186 W+ G + ++ Sbjct: 71 MWLINGQGEGLDAPMEE 87 >gi|158317409|ref|YP_001509917.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158112814|gb|ABW15011.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 490 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 3/108 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST-SIRYALYLRNEYEISFDW- 89 +G+ ++ R+A+ TQ+++A +S V+ E+G + I ++ +S + Sbjct: 20 IGSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARNLGLSPEDV 79 Query: 90 -IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + G + DRR E + R +I + Sbjct: 80 GLAPGGLADRRREPPRGSAVEKVAGSQRAWRLTRDHLNHHRISLARAA 127 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDW 171 L++ R+ G++Q + LLG S +S E GR I +I R I + + Sbjct: 24 LRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARNLGLSPED 78 >gi|325977288|ref|YP_004287004.1| HTH-type transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177216|emb|CBZ47260.1| Uncharacterized HTH-type transcriptional regulator Mb0023 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 210 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 18/142 (12%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ G + +RK TQ E+A ++A++ E G + + ++ + + Sbjct: 7 QNFGKNVAQLRKKKGVTQAELAEVIGVKKAAISKIELGTSYPTFANLDKIARYFKATPNE 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 ++ V + A K IR + E+ + Sbjct: 67 LFGTSTDIELERAVIKTDKYSEKAE----KIIRAVSKI--EEYSEKAD------------ 108 Query: 150 RTIPEIKPARKIKQVTKKHLDW 171 R + ++ +++++ D+ Sbjct: 109 RILYTLERIDELERILDSSQDY 130 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G + +RK KG++Q E +++G+ + +S E G + P KI + K + ++ Sbjct: 9 FGKNVAQLRKKKGVTQAELAEVIGVKKAAISKIELGTSYPTFANLDKIARYFKATPNELF 68 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKK 198 G + K ++ S+K++K Sbjct: 69 -GTSTDIELERAVIKTDKYSEKAEK 92 >gi|296332927|ref|ZP_06875387.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673272|ref|YP_003864944.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150207|gb|EFG91096.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411516|gb|ADM36635.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 185 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 31/78 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + + +RK N T +++ ++ + E G + ++ + N ++SF Sbjct: 8 IAMNLVKLRKNRNLTLDQVSELTGVSKAMLGQIEKGKSTPTVTTLWKIANGLQVSFSVFL 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 + R ++ + + + Sbjct: 68 KEDKPKVRKINLQDIEPV 85 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L +RK++ ++ + +L G+ + L E+G++ P + KI + Sbjct: 10 MNLVKLRKNRNLTLDQVSELTGVSKAMLGQIEKGKSTPTVTTLWKIANGLQVSFSVFLKE 69 Query: 176 DEVIVPK 182 D+ V K Sbjct: 70 DKPKVRK 76 >gi|294792860|ref|ZP_06758007.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] gi|294456759|gb|EFG25122.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] Length = 153 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K R K+Q E+A +A++ +E G + L Y ++ D + D Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDELLD 63 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK R G SQIE K +G+ N+ LSNYE G P++ + + LD Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|256849134|ref|ZP_05554567.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|312977969|ref|ZP_07789715.1| probable transcriptional regulator [Lactobacillus crispatus CTV-05] gi|256713910|gb|EEU28898.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|310895276|gb|EFQ44344.1| probable transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 95 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK+ RK + TQ+E+A E + E G SI A L +E + ++ Sbjct: 3 INNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIETLF 62 Query: 92 DGEVIDRRYEDV 103 + + Sbjct: 63 CLNEYVKNEQAK 74 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++K RK ++Q E + +G+ T+ + E+GR P I A K+ Q + ++ Sbjct: 1 MIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIET 60 Query: 172 IYFGDEVIVPKSIK 185 ++ +E + + K Sbjct: 61 LFCLNEYVKNEQAK 74 >gi|228930609|ref|ZP_04093590.1| transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829005|gb|EEM74661.1| transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 115 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 41/90 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+IR + +Q+ A + V+L E+G S + N +S D++ Sbjct: 5 IGIRVKEIRSSLAMSQQSFADAIEVSKGMVSLIESGKKKPSRETVSKISNLGNVSADYVM 64 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E +++ + + + + ++++ + Sbjct: 65 GLSDYKNLNESQSSEVKTELHDMISKIEKL 94 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K IR MSQ F + + +S E G+ P + KI + D++ Sbjct: 9 VKEIRSSLAMSQQSFADAIEVSKGMVSLIESGKKKPSRETVSKISNLGNVSADYVM 64 >gi|229028239|ref|ZP_04184378.1| hypothetical protein bcere0028_3680 [Bacillus cereus AH1271] gi|228733075|gb|EEL83918.1| hypothetical protein bcere0028_3680 [Bacillus cereus AH1271] Length = 83 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I ++R NN +Q +A +N EN S+ A L + D ++ Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLFLY 81 Query: 94 E 94 + Sbjct: 82 K 82 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 21 KNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|152996492|ref|YP_001341327.1| putative prophage repressor [Marinomonas sp. MWYL1] gi|150837416|gb|ABR71392.1| putative prophage repressor [Marinomonas sp. MWYL1] Length = 216 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K R TQ E+A + ++ E+G + R L L + +W+ Sbjct: 3 IAERVKQKRTDLRLTQAELAKRVGISQQSLQKIEDGRTQ-NPRKLLNLAKALDCDAEWLL 61 Query: 92 DG 93 G Sbjct: 62 LG 63 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+K R D ++Q E K +G+ +L E GRT + + + +W Sbjct: 1 MTIAERVKQKRTDLRLTQAELAKRVGISQQSLQKIEDGRTQ-NPRKLLNLAKALDCDAEW 59 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 + G V +S N S+ S Sbjct: 60 LLLGTACEVRESASSYTNNNSASTS 84 >gi|86740402|ref|YP_480802.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86567264|gb|ABD11073.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 171 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 2/86 (2%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANN--KTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 + T E R Y ++VG R++ IR Q E +AV +E G S+ Sbjct: 1 MPTTSENRAYAREVGARLRTIRTQQGRSLQQVETLSRGRWKTAAVGSYERGDRMISVEGL 60 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYED 102 L + Y + + G D Sbjct: 61 AALADFYGVPAHELLPGGRPDPLPPR 86 >gi|18249874|ref|NP_543062.1| hypothetical protein P27p10 [Enterobacteria phage phiP27] gi|18152341|emb|CAC83528.1| hypothetical protein [Enterobacteria phage phiP27] Length = 138 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R++ R+A T E+A+ + E + +E+G +I + L N Sbjct: 61 LQNKNSAINNRLRTQREACGLTTAELAMLLDLDEEIIIQWESGDYEPTISMLIPLANILG 120 Query: 85 ISFDWIYDGEVI 96 W+ G+ Sbjct: 121 CDPMWLLTGKPT 132 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI RL++ R+ G++ E LL + + +E G P I + + W+ Sbjct: 67 AINNRLRTQREACGLTTAELAMLLDLDEEIIIQWESGDYEPTISMLIPLANILGCDPMWL 126 Query: 173 YFGD 176 G Sbjct: 127 LTGK 130 >gi|307317593|ref|ZP_07597032.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306896751|gb|EFN27498.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 89 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 29/82 (35%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + +G R+++ R +Q +A + +E G S + + E Sbjct: 8 QTTHIDQKIGARVREFRLLRGMSQGALAEKLGITFQQMQKYEKGANRISASALILICKEL 67 Query: 84 EISFDWIYDGEVIDRRYEDVTN 105 I+ + I + ++ + Sbjct: 68 GITPNHILGAFFDNDEDTELVH 89 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 AR++ R +GMSQ + LG+ + YE+G I + + I Sbjct: 18 ARVREFRLLRGMSQGALAEKLGITFQQMQKYEKGANRISASALILICKELGITPNHIL 75 >gi|304408349|ref|ZP_07389996.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304342638|gb|EFM08485.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 452 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+ +R TQ E+ G + + ++ EN S + + N+ + +++ Sbjct: 2 KISERIRQLRVHKKMTQGELVDGIS-SVAYLSRIENNQIRPSSNFLKQISNKLGVELEYL 60 Query: 91 YDGEVIDRRYEDVT 104 + R + Sbjct: 61 VTLDSFKYRDKIND 74 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I R++ +R K M+Q E G+ + LS E + P ++I L+ Sbjct: 1 MKISERIRQLRVHKKMTQGELVD--GISSVAYLSRIENNQIRPSSNFLKQISNKLGVELE 58 Query: 171 WIYFGD 176 ++ D Sbjct: 59 YLVTLD 64 >gi|303231737|ref|ZP_07318460.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6] gi|302513686|gb|EFL55705.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6] Length = 297 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 7/84 (8%), Positives = 30/84 (35%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +I+++RK +Q + + ++ +E + ++ + + + + + + Sbjct: 2 KIQNLRKLYKLSQGDFGALLGMTKGQISSYEREVSQPTLETLNKIAQYFNCTLEELTETP 61 Query: 95 VIDRRYEDVTNKKRLDPYAIGARL 118 + + Y + + L Sbjct: 62 IREEFYFKWLLDQEEHTLFVTQEL 85 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++++RK +SQ +FG LLGM +S+YE+ + P ++ KI Q L+ + Sbjct: 1 MKIQNLRKLYKLSQGDFGALLGMTKGQISSYEREVSQPTLETLNKIAQYFNCTLEEL 57 >gi|260855372|ref|YP_003229263.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|257754021|dbj|BAI25523.1| predicted phage repressor protein [Escherichia coli O26:H11 str. 11368] Length = 135 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ RK TQ+ +A +V+ +E + + L + S WI Sbjct: 8 IGERIRYRRKNLKYTQRSLAKVLKISHVSVSQWERDDSEPTGKNLFALSKVLQCSPTWIL 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 G+ + + L Sbjct: 68 FGDEDKQPSPPIEEPVAL 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK+ +Q K+L + + ++S +E+ + P K + +V + WI FG Sbjct: 10 ERIRYRRKNLKYTQRSLAKVLKISHVSVSQWERDDSEPTGKNLFALSKVLQCSPTWILFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 DE P S K+ Sbjct: 70 DEDKQPSPPIEEPVALSPKE 89 >gi|257419815|ref|ZP_05596809.1| predicted protein [Enterococcus faecalis T11] gi|257161643|gb|EEU91603.1| predicted protein [Enterococcus faecalis T11] Length = 141 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 15/125 (12%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R +QK++A A +SA+ +E G + S L + D + G+ Sbjct: 11 LKSLRLERKMSQKKLAELAGISQSALAKYEKGTRNISNELDSALSKVLNV--DTLLQGQT 68 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 + + +L S ++ +S E +G+ ++LS G+ P Sbjct: 69 DEL-------------MTLINQLLSYQEINNLSNKELALKIGIDEASLSRVFNGKHKPSK 115 Query: 156 KPARK 160 +K Sbjct: 116 AVQQK 120 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++ LKS+R ++ MSQ + +L G+ S L+ YE+G + + +V D Sbjct: 4 NFSDSTLLKSLRLERKMSQKKLAELAGISQSALAKYEKGTRNISNELDSALSKVLNV--D 61 Query: 171 WIYFG 175 + G Sbjct: 62 TLLQG 66 >gi|222084212|ref|YP_002542738.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221721660|gb|ACM24816.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 121 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G ++ +R +QKEMA N + ++ E+G + + + + I +D Sbjct: 4 FGEAVRKLRARKGVSQKEMAAALNVTPAYLSALEHGKRGTPTFDLLQRIAGYFNIIWDE 62 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 G ++ +R KG+SQ E L + + LS E G+ P ++I Sbjct: 1 MTPFGEAVRKLRARKGVSQKEMAAALNVTPAYLSALEHGKRGTPTFDLLQRIAGYFNIIW 60 Query: 168 -HLDWIYFGDEVIVPKSIKRAKG 189 + ++ P+ + G Sbjct: 61 DEAEELFLLARFSDPRVVVDTSG 83 >gi|153815596|ref|ZP_01968264.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC 27756] gi|317501623|ref|ZP_07959815.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088574|ref|ZP_08337485.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847027|gb|EDK23945.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC 27756] gi|295100105|emb|CBK89194.1| Predicted transcriptional regulator [Eubacterium cylindroides T2-87] gi|316896966|gb|EFV19045.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium 8_1_57FAA] gi|330407531|gb|EGG87031.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium 3_1_46FAA] Length = 223 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ IRK Q+E+A +++ E G+ + + + ++ + + Sbjct: 11 LGENIQIIRKHRGMKQQELANKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNELL 70 Query: 92 DGE 94 GE Sbjct: 71 SGE 73 >gi|124486442|ref|YP_001031058.1| XRE family transcriptional regulator [Methanocorpusculum labreanum Z] gi|124363983|gb|ABN07791.1| transcriptional regulator, XRE family [Methanocorpusculum labreanum Z] Length = 63 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK R ++ TQ +A + E G S+ A + ++ + + I+ Sbjct: 3 NKIKVYRAMHDLTQDALAKELGVTRQTILAIEKGKYDPSLELAFRISRYFQTTIEEIFSF 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K R ++Q K LG+ T+ E+G+ P ++ A +I + + ++ I+ Sbjct: 1 MKNKIKVYRAMHDLTQDALAKELGVTRQTILAIEKGKYDPSLELAFRISRYFQTTIEEIF 60 Query: 174 FGD 176 + Sbjct: 61 SFE 63 >gi|15891606|ref|NP_357278.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens str. C58] gi|15160044|gb|AAK90063.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens str. C58] Length = 182 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 D+G R++ +R +N +Q+E+A A S ++L E+ + S+ + + Sbjct: 4 DLGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILD 54 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R +SQ E + G+ NST+S E + P + ++I L + + Sbjct: 9 LRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGLAEFFAFEP 68 Query: 178 VIVPKSIKRAKG 189 K+ RA Sbjct: 69 ETSRKAFYRADE 80 >gi|17988333|ref|NP_540967.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|62290921|ref|YP_222714.1| hypothetical protein BruAb1_2052 [Brucella abortus bv. 1 str. 9-941] gi|82700832|ref|YP_415406.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189025134|ref|YP_001935902.1| Helix-turn-helix motif [Brucella abortus S19] gi|225853508|ref|YP_002733741.1| XRE family transcriptional regulator [Brucella melitensis ATCC 23457] gi|237816428|ref|ZP_04595421.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|254690210|ref|ZP_05153464.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 6 str. 870] gi|254694700|ref|ZP_05156528.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 3 str. Tulya] gi|254696327|ref|ZP_05158155.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254731243|ref|ZP_05189821.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 4 str. 292] gi|256045681|ref|ZP_05448559.1| transcriptional regulator, XRE family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256112402|ref|ZP_05453323.1| transcriptional regulator, XRE family protein [Brucella melitensis bv. 3 str. Ether] gi|256258465|ref|ZP_05464001.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 9 str. C68] gi|256263010|ref|ZP_05465542.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260546183|ref|ZP_05821923.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260562982|ref|ZP_05833468.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260755750|ref|ZP_05868098.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758974|ref|ZP_05871322.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760698|ref|ZP_05873041.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884776|ref|ZP_05896390.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261215027|ref|ZP_05929308.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|265992102|ref|ZP_06104659.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993839|ref|ZP_06106396.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|297247305|ref|ZP_06931023.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|17984108|gb|AAL53231.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|62197053|gb|AAX75353.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616933|emb|CAJ12034.1| Helix-turn-helix motif [Brucella melitensis biovar Abortus 2308] gi|189020706|gb|ACD73428.1| Helix-turn-helix motif [Brucella abortus S19] gi|225641873|gb|ACO01787.1| transcriptional regulator, XRE family protein [Brucella melitensis ATCC 23457] gi|237788495|gb|EEP62710.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|260096290|gb|EEW80166.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260152998|gb|EEW88090.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260669292|gb|EEX56232.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671130|gb|EEX57951.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675858|gb|EEX62679.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874304|gb|EEX81373.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260916634|gb|EEX83495.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|262764820|gb|EEZ10741.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003168|gb|EEZ15461.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092883|gb|EEZ17058.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|297174474|gb|EFH33821.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|326410075|gb|ADZ67140.1| Helix-turn-helix motif protein [Brucella melitensis M28] Length = 126 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G R++++R+ TQKEMA + ++ E+G + + + I +D Sbjct: 4 FGKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE 62 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHL 169 G RL+ +R+++G++Q E + L + + LS E GR P ++I Sbjct: 1 MTPFGKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIW 60 Query: 170 DW 171 D Sbjct: 61 DE 62 >gi|325528329|gb|EGD05485.1| putative DNA-binding protein [Burkholderia sp. TJI49] Length = 109 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ R A K+Q+ +A A + ++ E G+ + SI + ++ ++ Sbjct: 20 LGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPSIETLANICYSLNVTLAELF 79 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +R A +K R Sbjct: 80 ---APLNGVSLKPTGERRANAATPPEIKRQR 107 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K R SQ + + +S E+G P I+ I L Sbjct: 18 IALGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPSIETLANICYSLNVTLAE 77 Query: 172 IY 173 ++ Sbjct: 78 LF 79 >gi|324325802|gb|ADY21062.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 403 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 92 DGEV 95 + + Sbjct: 63 EEDE 66 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLLEE 64 Query: 176 DEVIVPKSIKRAK 188 DE + + I++ + Sbjct: 65 DEGKIVELIQKME 77 >gi|310826601|ref|YP_003958958.1| hypothetical protein ELI_1005 [Eubacterium limosum KIST612] gi|308738335|gb|ADO35995.1| hypothetical protein ELI_1005 [Eubacterium limosum KIST612] Length = 266 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY--ALYLRNEYEISFDW 89 + R+KD+R T +++A + +SA+ +E G I + + L YE++ D+ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYE-GDNFKDISHYALIELAKFYEVTVDY 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + L + LKS R D + Sbjct: 64 LLGRSQTKNHPNADLADLHLSD-DMIELLKSGRVDNSLLCE 103 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + S L +YE ++ + + +D Sbjct: 3 LSIQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDNFKDISHYALIELAKFYEVTVD 62 Query: 171 WIY 173 ++ Sbjct: 63 YLL 65 >gi|307708405|ref|ZP_07644871.1| conserved domain protein [Streptococcus mitis NCTC 12261] gi|307615504|gb|EFN94711.1| conserved domain protein [Streptococcus mitis NCTC 12261] Length = 69 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R + ++Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MVKNLKLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 >gi|270292315|ref|ZP_06198526.1| putative transcriptional repressor [Streptococcus sp. M143] gi|270278294|gb|EFA24140.1| putative transcriptional repressor [Streptococcus sp. M143] Length = 69 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRRLGKTLDQLFWEE 65 Query: 95 VIDR 98 ++ Sbjct: 66 EDEK 69 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK R ++ ++Q + + +G+ T+ E G+ P + + I + K LD Sbjct: 1 MAKNLKLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRRLGKTLDQ 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 LFWEEED 67 >gi|268593582|ref|ZP_06127803.1| transcriptional activator, Rgg/GadR/MutR family [Providencia rettgeri DSM 1131] gi|291310812|gb|EFE51265.1| transcriptional activator, Rgg/GadR/MutR family [Providencia rettgeri DSM 1131] Length = 123 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 2/111 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G I +RK T ++A + ++ +E G+C ++ + + + IS Sbjct: 15 KVIGLEIYRLRKECAMTGVQLAKILQVSQQQISRYERGVCHITVDALVLILDALHISMAE 74 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 + + + L+ + +S + LG Sbjct: 75 FFKRVYLSSISHKDAQFVLNYHSVMMPPLEIL--PHHLSHHDEAFFLGETK 123 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 + +RK+ M+ ++ K+L + +S YE+G + I + + Sbjct: 21 IYRLRKECAMTGVQLAKILQVSQQQISRYERGVCHITVDALVLILDALHISMAEFFK 77 >gi|227879298|ref|ZP_03997165.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256844478|ref|ZP_05549964.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|262047150|ref|ZP_06020108.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|227861093|gb|EEJ68745.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256613556|gb|EEU18759.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|260572395|gb|EEX28957.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 96 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK+ RK + TQ+E+A E + E G SI A L +E + ++ Sbjct: 4 INNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIETLF 63 Query: 92 DGEVIDRRYEDV 103 + + Sbjct: 64 CLNEYVKNEQAK 75 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 37/75 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I ++K RK ++Q E + +G+ T+ + E+GR P I A K+ Q + ++ Sbjct: 1 MMIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIE 60 Query: 171 WIYFGDEVIVPKSIK 185 ++ +E + + K Sbjct: 61 TLFCLNEYVKNEQAK 75 >gi|212696472|ref|ZP_03304600.1| hypothetical protein ANHYDRO_01010 [Anaerococcus hydrogenalis DSM 7454] gi|212676565|gb|EEB36172.1| hypothetical protein ANHYDRO_01010 [Anaerococcus hydrogenalis DSM 7454] Length = 65 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK+ G+ Q + K LG+ T+ E + P ++ A KI K ++ I+ Sbjct: 1 MNNIIKKLRKENGLRQEDLAKELGVSRQTIIAIENNKYDPSLELAIKISIFFDKTVNDIF 60 Query: 174 FGD 176 + Sbjct: 61 LFE 63 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK +RK N Q+++A + EN S+ A+ + ++ + + I+ E Sbjct: 5 IKKLRKENGLRQEDLAKELGVSRQTIIAIENNKYDPSLELAIKISIFFDKTVNDIFLFEN 64 Query: 96 I 96 Sbjct: 65 K 65 >gi|187934068|ref|YP_001886476.1| transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722221|gb|ACD23442.1| transcriptional regulator [Clostridium botulinum B str. Eklund 17B] Length = 178 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 7/136 (5%) Query: 34 TRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+K+IR NKTQ+E A N ++ ++ E+G S + R + N+Y I+ DW+ + Sbjct: 3 NRLKEIRLHFNKTQEEFANSINIKSKAHISALESGKRSITDRIISDVCNQYNINEDWLRN 62 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 G K+ + K + + + + L+G L N Sbjct: 63 GIKPMLVQTPNDELKQFALKYKFNDIEYKFLSEYVKLDVDKRSDLVGF----LENIMNSD 118 Query: 151 TIPEIKPARKIKQVTK 166 RKI+++ Sbjct: 119 ASLVADTKRKIEKIYN 134 Score = 39.2 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK IR +Q EF + + + +S E G+ + + + DW+ Sbjct: 1 MNNRLKEIRLHFNKTQEEFANSINIKSKAHISALESGKRSITDRIISDVCNQYNINEDWL 60 Query: 173 YFG 175 G Sbjct: 61 RNG 63 >gi|167758839|ref|ZP_02430966.1| hypothetical protein CLOSCI_01182 [Clostridium scindens ATCC 35704] gi|167663579|gb|EDS07709.1| hypothetical protein CLOSCI_01182 [Clostridium scindens ATCC 35704] Length = 350 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I+ RK N TQ+++A AV+ +E G I L + + Sbjct: 2 KINEMIRTRRKEMNLTQEQVASRLGVSAPAVHKWETGNSYPDITLLPALARLLGTDLNTL 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 33/75 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I +++ RK+ ++Q + LG+ + +E G + P+I + ++ L+ Sbjct: 1 MKINEMIRTRRKEMNLTQEQVASRLGVSAPAVHKWETGNSYPDITLLPALARLLGTDLNT 60 Query: 172 IYFGDEVIVPKSIKR 186 + E + + + + Sbjct: 61 LLSFQEDLSRQEVDQ 75 >gi|15674958|ref|NP_269132.1| putative repressor protein [Streptococcus pyogenes M1 GAS] gi|13622103|gb|AAK33853.1| putative repressor protein - phage associated [Streptococcus pyogenes M1 GAS] Length = 248 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K++R + N T +++A + +S ++ +E G S I + + + + G+ Sbjct: 11 VKELRLSKNLTMEQLAEEVGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMMFGDN 70 Query: 96 IDRRYEDVT 104 V Sbjct: 71 PTPTAPQVE 79 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 8/95 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A A +K +R K ++ + + +G ST+S +E+G P+I +I + Sbjct: 5 IAFPAMVKELRLSKNLTMEQLAEEVGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKK 64 Query: 172 IYFGDE--------VIVPKSIKRAKGNQSSKKSKK 198 + FGD ++P ++++ S + K+ Sbjct: 65 MMFGDNPTPTAPQVELIPSTLQKINSTSSQLEHKR 99 >gi|61680543|pdb|1Y7Y|A Chain A, High-Resolution Crystal Structure Of The Restriction- Modification Controller Protein C.Ahdi From Aeromonas Hydrophila gi|61680544|pdb|1Y7Y|B Chain B, High-Resolution Crystal Structure Of The Restriction- Modification Controller Protein C.Ahdi From Aeromonas Hydrophila gi|32263455|gb|AAP78483.1| C.AhdI [Aeromonas hydrophila] Length = 74 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++++R A +Q+ +A + S V E G + S+ L L +I + Sbjct: 13 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPREL 72 Query: 91 YD 92 + Sbjct: 73 FC 74 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G RL+ +R KG+SQ L G+ S + E+G+ + K+ Sbjct: 10 DLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEP 69 Query: 170 DWIY 173 ++ Sbjct: 70 RELF 73 >gi|186685942|ref|YP_001869138.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468394|gb|ACC84195.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 377 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +K IR +Q+++A A+ ++ E+G+ + S+ L L + + Sbjct: 6 DLRNNLKSIRTRLGMSQQDLANIASVTRQTISGVESGLYAPSVAITLRLAKALGCQVEDL 65 Query: 91 YDGE 94 + E Sbjct: 66 FWLE 69 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LKSIR GMSQ + + + T+S E G P + ++ + ++ +++ Sbjct: 8 RNNLKSIRTRLGMSQQDLANIASVTRQTISGVESGLYAPSVAITLRLAKALGCQVEDLFW 67 Query: 175 GDEVIVPKSIKRAK 188 + + AK Sbjct: 68 LERDLPEIEAVLAK 81 >gi|325970790|ref|YP_004246981.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324026028|gb|ADY12787.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 91 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK +R A N TQ+E+ A+ S + E+G + + + + +SF + Sbjct: 6 IGQAIKALRLAQNMTQEELIERADLSRSQLYYIESGKRTPRLPTMQSICSALSVSF--LE 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 +D+ A GA + Sbjct: 64 FVLYLDQYSPTSCTPNISSMEAPGATI 90 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG +K++R + M+Q E + + S L E G+ P + + I Sbjct: 1 MEQLPIGQAIKALRLAQNMTQEELIERADLSRSQLYYIESGKRTPRLPTMQSICSALSVS 60 Query: 169 -LDWIYFGDE 177 L+++ + D+ Sbjct: 61 FLEFVLYLDQ 70 >gi|326203199|ref|ZP_08193064.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] gi|325986457|gb|EGD47288.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] Length = 66 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ IRK +Q+E+A + ENG + SI A + ++++ + I+ Sbjct: 3 NRLEQIRKQRGISQEELARVLEVSRQTIGSLENGRYNPSIILAFKIAIYFKMNIEEIFIY 62 Query: 94 EVID 97 E + Sbjct: 63 EEDN 66 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK +G+SQ E ++L + T+ + E GR P I A KI K +++ I+ Sbjct: 1 MKNRLEQIRKQRGISQEELARVLEVSRQTIGSLENGRYNPSIILAFKIAIYFKMNIEEIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEED 65 >gi|227356056|ref|ZP_03840447.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227163833|gb|EEI48741.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 187 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 25/74 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I RK + E+A A +S ++ E G + SI + I F + Sbjct: 12 ISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQLI 71 Query: 92 DGEVIDRRYEDVTN 105 + + + Sbjct: 72 SSPKPEVKVIRKGD 85 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + RK G+S E + G+ STLS E G+ P I+ I + Sbjct: 14 QSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQLISS 73 Query: 176 DEVIVPKSIKRAKGNQSSKKS 196 + V K I++ G + S + Sbjct: 74 PKPEV-KVIRKGDGFKISAEK 93 >gi|163815718|ref|ZP_02207090.1| hypothetical protein COPEUT_01899 [Coprococcus eutactus ATCC 27759] gi|158449023|gb|EDP26018.1| hypothetical protein COPEUT_01899 [Coprococcus eutactus ATCC 27759] Length = 66 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V I++IR+ Q ++A V E G + S + L + + + + ++ Sbjct: 3 VTNNIREIREQRGIYQDDLAAAIGFSTKTVGRIERGDSTPSAEFMLRISKYFNLLVEDVF 62 Query: 92 DGEV 95 E Sbjct: 63 HVED 66 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 31/66 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ ++ IR+ +G+ Q + +G T+ E+G + P + +I + ++ Sbjct: 1 MAVTNNIREIREQRGIYQDDLAAAIGFSTKTVGRIERGDSTPSAEFMLRISKYFNLLVED 60 Query: 172 IYFGDE 177 ++ ++ Sbjct: 61 VFHVED 66 >gi|160942938|ref|ZP_02090177.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium prausnitzii M21/2] gi|158445839|gb|EDP22842.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium prausnitzii M21/2] Length = 85 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ +A A +N E G + +I + + + D ++ E Sbjct: 26 KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILDKTLDELFWEE 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ R +K M+Q + G+ T++ E+G P I R I ++ K LD Sbjct: 21 MPKNLKLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILDKTLDE 80 Query: 172 IYFGD 176 +++ + Sbjct: 81 LFWEE 85 >gi|116249777|ref|YP_765615.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|241206954|ref|YP_002978050.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115254425|emb|CAK05499.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|240860844|gb|ACS58511.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 125 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 5/108 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFD-- 88 G ++ +R +QKEMA N + ++ E+G + + + I +D Sbjct: 4 FGEAVRRLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIWDEA 63 Query: 89 -WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 ++ + Y A + R+ + + E G+L Sbjct: 64 EELFLLARSSDPRVVIDTSGLPPEYTEFAN-RLARRIRNLDSAEIGRL 110 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 4/83 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKK-- 167 G ++ +R KG+SQ E + L + + LS E G+ +P ++I Sbjct: 1 MTPFGEAVRRLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIW 60 Query: 168 -HLDWIYFGDEVIVPKSIKRAKG 189 + ++ P+ + G Sbjct: 61 DEAEELFLLARSSDPRVVIDTSG 83 >gi|114763961|ref|ZP_01443202.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114543553|gb|EAU46567.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 131 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 3/106 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G RI R+A Q+++A ++ +EN + L +S W+ Sbjct: 15 FGDRIAAAREAAGMGQEKLARRLGVKLKTLHGWENDLAEPRANKLQMLAGLLNVSIVWLL 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 GE + T P + L IR K Q G LG Sbjct: 75 TGEGEGISGPEETEAAL--PADVNDALLEIRALKTQMQT-AGDRLG 117 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G R+ + R+ GM Q + + LG+ TL +E P + + + + Sbjct: 11 DAATFGDRIAAAREAAGMGQEKLARRLGVKLKTLHGWENDLAEPRANKLQMLAGLLNVSI 70 Query: 170 DWIYFGD 176 W+ G+ Sbjct: 71 VWLLTGE 77 >gi|85707435|ref|ZP_01038515.1| probable transcriptional regulator [Roseovarius sp. 217] gi|85668023|gb|EAQ22904.1| probable transcriptional regulator [Roseovarius sp. 217] Length = 373 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGA--NQLESAVNLFENGMCSTSIRYALYLRNEY 83 R+ G R++ RK + + +A + A++ +E S + L Sbjct: 10 RRERIMFGQRLRLARKRAGLSMQALAERVTPSVSAQAISKYEADKMMPSSSVLVGLGKAL 69 Query: 84 EISFDWIYDGEVI 96 +S D++ G+V Sbjct: 70 GVSLDFLLGGQVE 82 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 2/94 (2%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL--GMPNSTLSNYEQGRTIPEIKPARKIK 162 N R + G RL+ RK G+S + + + +S YE + +P + Sbjct: 7 NNNRRERIMFGQRLRLARKRAGLSMQALAERVTPSVSAQAISKYEADKMMPSSSVLVGLG 66 Query: 163 QVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 + LD++ G + R S++ Sbjct: 67 KALGVSLDFLLGGQVEALESVEWRKNSTASAQDR 100 >gi|324009966|gb|EGB79185.1| helix-turn-helix protein [Escherichia coli MS 57-2] Length = 178 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/123 (8%), Positives = 33/123 (26%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + F ++ + ++ + + Q G + Sbjct: 61 VPFSTFISPPQSATPSVYDPQRQAMVITSLFPYDPQLCFEHFSIQRAPGAISESTPHEKG 120 Query: 145 NYE 147 E Sbjct: 121 VIE 123 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKSIKRAK 188 P + Sbjct: 72 SATPSVYDPQR 82 >gi|284045281|ref|YP_003395621.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949502|gb|ADB52246.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 201 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++ +R T E+A A S ++ E G ++ + L I+ D + Sbjct: 34 RLRQLRDERGLTLAEVAFAAGMATSTLSRLETGARRLTLAHLPALARALGIATDELV 90 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R ++G++ E GM STLS E G + + + D + Sbjct: 35 LRQLRDERGLTLAEVAFAAGMATSTLSRLETGARRLTLAHLPALARALGIATDELV 90 >gi|228968265|ref|ZP_04129263.1| hypothetical protein bthur0004_50440 [Bacillus thuringiensis serovar sotto str. T04001] gi|228791438|gb|EEM39042.1| hypothetical protein bthur0004_50440 [Bacillus thuringiensis serovar sotto str. T04001] Length = 65 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEG 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK N+ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEGIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|291087267|ref|ZP_06345889.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075621|gb|EFE12985.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 159 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS-IRYALYLRNEYEISFDWIY 91 R+K+ R N TQ E+A A + +E G S + + + + +++ Sbjct: 26 ERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKIADALNTTTEYLL 84 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE-IKPARKIKQVTKKHLD 170 RLK R + ++Q+E + G+ T+ NYE G P + +KI + Sbjct: 22 MVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKIADALNTTTE 81 Query: 171 WIY 173 ++ Sbjct: 82 YLL 84 >gi|225378523|ref|ZP_03755744.1| hypothetical protein ROSEINA2194_04191 [Roseburia inulinivorans DSM 16841] gi|257438006|ref|ZP_05613761.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|225209626|gb|EEG91980.1| hypothetical protein ROSEINA2194_04191 [Roseburia inulinivorans DSM 16841] gi|257199666|gb|EEU97950.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 159 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS-IRYALYLRNEYEISFDWIY 91 R+K+ R N TQ E+A A + +E G S + + + + +++ Sbjct: 26 ERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKIADALNTTTEYLL 84 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + ++ + V K+R P RLK R + ++Q+E + G+ T+ NYE G Sbjct: 1 MSIDFYEKVFVFVIKKERGIPMVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGS 60 Query: 151 TIPE-IKPARKIKQVTKKHLDWIY 173 P + +KI +++ Sbjct: 61 RKPSNMVTIQKIADALNTTTEYLL 84 >gi|225018741|ref|ZP_03707933.1| hypothetical protein CLOSTMETH_02691 [Clostridium methylpentosum DSM 5476] gi|224948469|gb|EEG29678.1| hypothetical protein CLOSTMETH_02691 [Clostridium methylpentosum DSM 5476] Length = 116 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 29/68 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI +R+ + QK++A +S+++ +E + + + + + D++ Sbjct: 4 LGDRIISLRQDLDIQQKDLAAQIGITKSSMSKYERNINIPNAEILSKIADALNTTTDFLL 63 Query: 92 DGEVIDRR 99 + Sbjct: 64 GRTPSKQP 71 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R+ S+R+D + Q + +G+ S++S YE+ IP + KI D Sbjct: 1 MLTLGDRIISLRQDLDIQQKDLAAQIGITKSSMSKYERNINIPNAEILSKIADALNTTTD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 ++ P S + + ++ Sbjct: 61 FLLGRTPSKQPLSSSLMRLSTDEQR 85 >gi|157833618|pdb|1R63|A Chain A, Structural Role Of A Buried Salt Bridge In The 434 Repressor Dna-Binding Domain, Nmr, 20 Structures Length = 63 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+K R Q E+A + ++ ENG R+ L + +S DW+ Sbjct: 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 60 Query: 92 DG 93 +G Sbjct: 61 NG 62 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +I +R+KS R G++Q E + +G ++ E G+T + ++ +DW+ Sbjct: 1 SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWL 59 Query: 173 YFG 175 G Sbjct: 60 LNG 62 >gi|332855796|ref|ZP_08436047.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332870031|ref|ZP_08439007.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332727271|gb|EGJ58715.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332732531|gb|EGJ63782.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 213 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 27/75 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI+ +RK ++ ++ + V +E + L + + D Sbjct: 1 METIGLRIQKLRKEKKLSKVKLGDLVGVSDVTVGFWEKDVNEPKYENLEALCQVLDTTID 60 Query: 89 WIYDGEVIDRRYEDV 103 ++ G + + Sbjct: 61 YLKYGVNNNEQSVKD 75 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 35/58 (60%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +RK+K +S+++ G L+G+ + T+ +E+ P+ + + QV +D++ +G Sbjct: 8 IQKLRKEKKLSKVKLGDLVGVSDVTVGFWEKDVNEPKYENLEALCQVLDTTIDYLKYG 65 >gi|294794616|ref|ZP_06759752.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] gi|294454946|gb|EFG23319.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] Length = 153 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K R K+Q E+A +A++ +E G + L Y ++ D + D Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDELLD 63 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK R G SQIE K +G+ N+ LSNYE G P++ + + LD Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|291560620|emb|CBL39420.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 130 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 29/78 (37%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+ +RK Q++ ++++ E G + + + L + E+ +S DW + Sbjct: 4 RLHHLRKTLKLNQEDFGKRLGVTGASISRLEKGERNITEQMILSICREFNVSEDWFRYEK 63 Query: 95 VIDRRYEDVTNKKRLDPY 112 + + + Sbjct: 64 GEMFLSVEDEVSEMVSHL 81 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL +RK ++Q +FGK LG+ +++S E+G + I + DW Sbjct: 1 MNTRLHHLRKTLKLNQEDFGKRLGVTGASISRLEKGERNITEQMILSICREFNVSEDWFR 60 Query: 174 FGDEVI 179 + + Sbjct: 61 YEKGEM 66 >gi|326203161|ref|ZP_08193027.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] gi|325986807|gb|EGD47637.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] Length = 70 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK +R + TQ ++A A+ E + S+ A + + + ++ Sbjct: 2 IQNRIKVLRAERDWTQADLAEMVGISRQAIISIEKYKYTPSLELAFKIAEVFNVLITEVF 61 Query: 92 DGEVIDRRY 100 + + Sbjct: 62 EHKEDMNND 70 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 34/67 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R+K +R ++ +Q + +++G+ + + E+ + P ++ A KI +V + + Sbjct: 1 MIQNRIKVLRAERDWTQADLAEMVGISRQAIISIEKYKYTPSLELAFKIAEVFNVLITEV 60 Query: 173 YFGDEVI 179 + E + Sbjct: 61 FEHKEDM 67 >gi|229017769|ref|ZP_04174656.1| hypothetical protein bcere0030_23120 [Bacillus cereus AH1273] gi|229023991|ref|ZP_04180470.1| hypothetical protein bcere0029_23160 [Bacillus cereus AH1272] gi|228737323|gb|EEL87839.1| hypothetical protein bcere0029_23160 [Bacillus cereus AH1272] gi|228743534|gb|EEL93647.1| hypothetical protein bcere0030_23120 [Bacillus cereus AH1273] Length = 185 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + +++A ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|225405572|ref|ZP_03760761.1| hypothetical protein CLOSTASPAR_04793 [Clostridium asparagiforme DSM 15981] gi|225042882|gb|EEG53128.1| hypothetical protein CLOSTASPAR_04793 [Clostridium asparagiforme DSM 15981] Length = 81 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +R+A TQ+E A + E G S ++ + + ++ ++ Sbjct: 17 FGNELRKMREARRYTQEEFAQLCGISRAYYGRLERGEHSVTLERCKQIADALNLTLSDLF 76 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G L+ +R+ + +Q EF +L G+ + E+G ++ ++I L ++ Sbjct: 17 FGNELRKMREARRYTQEEFAQLCGISRAYYGRLERGEHSVTLERCKQIADALNLTLSDLF 76 >gi|254489741|ref|ZP_05102936.1| Cupin domain protein [Methylophaga thiooxidans DMS010] gi|224464826|gb|EEF81080.1| Cupin domain protein [Methylophaga thiooxydans DMS010] Length = 180 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%) Query: 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 N T E++ AN ++ ENG+ S S+ L N ++ ++ + Sbjct: 2 ENGLTIAEVSKRANVSRGMLSKIENGLTSPSLEKLEQLANALGVTLSRLFHDYDTPKSGA 61 Query: 102 D 102 Sbjct: 62 Q 62 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 123 KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP- 181 + G++ E K + LS E G T P ++ ++ L ++ + Sbjct: 1 MENGLTIAEVSKRANVSRGMLSKIENGLTSPSLEKLEQLANALGVTLSRLFHDYDTPKSG 60 Query: 182 -KSIKRAKGNQSSKKSKKDKKSSN 204 + ++ +G + ++ K + N Sbjct: 61 AQYVRGGEGMEVVRRGTKSGHTYN 84 >gi|160932465|ref|ZP_02079855.1| hypothetical protein CLOLEP_01303 [Clostridium leptum DSM 753] gi|156868424|gb|EDO61796.1| hypothetical protein CLOLEP_01303 [Clostridium leptum DSM 753] Length = 100 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R++ +Q ++A S+ +E G S+ L Y +S D++ D Sbjct: 12 QKLKAFRESRGYSQNQLADYLGIERSSYTRYETGETEPSLFALKKLSILYGVSADFLLDI 71 Query: 94 EV---IDRRYEDVTNKKRLDPYAIGARLK 119 + + + K L Y + ++ Sbjct: 72 HMNVNYKLQNDITRKYKILRGYHLDDFIR 100 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 KK+++ + +LK+ R+ +G SQ + LG+ S+ + YE G T P + +K+ + Sbjct: 2 KKKIEISGLTQKLKAFRESRGYSQNQLADYLGIERSSYTRYETGETEPSLFALKKLSILY 61 Query: 166 KKHLDWIY 173 D++ Sbjct: 62 GVSADFLL 69 >gi|150399854|ref|YP_001323621.1| XRE family transcriptional regulator [Methanococcus vannielii SB] gi|150012557|gb|ABR55009.1| putative transcriptional regulator, XRE family [Methanococcus vannielii SB] Length = 183 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K IRK + ++ +S + E + +I L + N ++SF + Sbjct: 8 ISKNLKKIRKEKGLSLDALSTLTGVSKSMLGQIEREEVNPTISTILKIANGLKVSFTSLM 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 E ++ + + + Sbjct: 68 KKETLEVNVIRSKDLEPV 85 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 25/64 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I LK IRK+KG+S L G+ S L E+ P I KI K + Sbjct: 7 VISKNLKKIRKEKGLSLDALSTLTGVSKSMLGQIEREEVNPTISTILKIANGLKVSFTSL 66 Query: 173 YFGD 176 + Sbjct: 67 MKKE 70 >gi|78066449|ref|YP_369218.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77967194|gb|ABB08574.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 93 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 25/65 (38%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G ++ R +Q+ +A+ S + E G + +I + + + IS Sbjct: 25 HLAAIGATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISP 84 Query: 88 DWIYD 92 + Sbjct: 85 SKLLK 89 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIGA +++ R + G+SQ L G+ S + E+G+ I +I + Sbjct: 28 AIGATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISPSKL 87 Query: 173 YF 174 Sbjct: 88 LK 89 >gi|54308994|ref|YP_130014.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46913424|emb|CAG20212.1| putative transcriptional regulator [Photobacterium profundum SS9] Length = 101 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 6/91 (6%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K+ RKA +QKE+ I S+ +N +E G I + +E + + Sbjct: 10 RLKEARKAAGISQKELGIRLGMDPSSASGRMNHYEKGRHMPDIATLRRIADELGVPLSYF 69 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + D + ++L ++ + Sbjct: 70 FC--DSDNSAKLACLIEKLSEEDKKELIRKL 98 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLS----NYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK RK G+SQ E G LGM S+ S +YE+GR +P+I R+I L + + Sbjct: 11 LKEARKAAGISQKELGIRLGMDPSSASGRMNHYEKGRHMPDIATLRRIADELGVPLSYFF 70 Query: 174 FGDEVIVPKSIKRAKGNQSSKKS 196 + + K ++ KK Sbjct: 71 CDSDNSAKLACLIEKLSEEDKKE 93 >gi|163940218|ref|YP_001645102.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229167265|ref|ZP_04295006.1| hypothetical protein bcere0007_22290 [Bacillus cereus AH621] gi|163862415|gb|ABY43474.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228616303|gb|EEK73387.1| hypothetical protein bcere0007_22290 [Bacillus cereus AH621] Length = 185 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + IK IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNIKAIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNIKAIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|317131470|ref|YP_004090784.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469449|gb|ADU26053.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 73 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +I+D+R+ ++ TQ+++A S +E G ++ A+ L Y+ S D++ Sbjct: 4 KIRDLREDHDLTQQQIAEYLKCDRSLYAKYERGERDVPLQTAVRLAIYYKTSVDYLVGLT 63 Query: 95 VIDRRYED 102 Y Sbjct: 64 DERMAYSR 71 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 28/56 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R+D ++Q + + L S + YE+G ++ A ++ K +D++ Sbjct: 5 IRDLREDHDLTQQQIAEYLKCDRSLYAKYERGERDVPLQTAVRLAIYYKTSVDYLV 60 >gi|298292838|ref|YP_003694777.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929349|gb|ADH90158.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 91 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 K VG + +R+A TQ+E+A+ + + ++ E G+ + +I + +S Sbjct: 4 RKLVGRNLARLRQAQKLTQEELAMRSGFSQQYLSDMERGLKNPTIITLYEIALALRVS 61 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 L +R+ + ++Q E G LS+ E+G P I +I + Sbjct: 9 RNLARLRQAQKLTQEELAMRSGFSQQYLSDMERGLKNPTIITLYEIALALRVS 61 >gi|302875737|ref|YP_003844370.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307689168|ref|ZP_07631614.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578594|gb|ADL52606.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 434 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK T K++A G ++L E+G + S+ YL N + +++ Sbjct: 6 LGEKIKRLRKEKGFTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLANTLHCTVEYLM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEET 69 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K +RK+KG + + + +S E G++ P + + Sbjct: 1 MEILSLGEKIKRLRKEKGFTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANTLHCT 59 Query: 169 LDWIYFGDEVIVPK 182 ++++ +E K Sbjct: 60 VEYLMESEETQAEK 73 >gi|229095345|ref|ZP_04226337.1| Transcriptional regulator [Bacillus cereus Rock3-29] gi|229101455|ref|ZP_04232196.1| Transcriptional regulator [Bacillus cereus Rock3-28] gi|229114294|ref|ZP_04243715.1| Transcriptional regulator [Bacillus cereus Rock1-3] gi|228669314|gb|EEL24735.1| Transcriptional regulator [Bacillus cereus Rock1-3] gi|228681943|gb|EEL36079.1| Transcriptional regulator [Bacillus cereus Rock3-28] gi|228688204|gb|EEL42090.1| Transcriptional regulator [Bacillus cereus Rock3-29] Length = 66 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R + TQ+++A ++L E G + S+ L + + + + ++ Sbjct: 4 SKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 94 EVI 96 E Sbjct: 64 EEE 66 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R ++Q + + +G+ T+S E+G+ P + KI K L+ + Sbjct: 1 MAVSKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDL 60 Query: 173 YFGDEV 178 ++ +E Sbjct: 61 FWEEEE 66 >gi|312868622|ref|ZP_07728816.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095831|gb|EFQ54081.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 68 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI++ RKA +Q E+ A++L+E + + L + +S ++ Sbjct: 3 NRIRECRKAAGMSQAELGNIVGLSRQAISLYEINLRMPTFEMWECLASALHVSPAYLVGW 62 Query: 94 EVID 97 Sbjct: 63 SDEK 66 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ RK GMSQ E G ++G+ +S YE +P + + ++ Sbjct: 1 MKNRIRECRKAAGMSQAELGNIVGLSRQAISLYEINLRMPTFEMWECLASALHVSPAYLV 60 >gi|256371092|ref|YP_003108916.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256007676|gb|ACU53243.1| transcriptional regulator, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 205 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 20/51 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 +G R++ R+ + +A + ++ E S SI + + + Sbjct: 8 IGERLRHAREQRGLSLAAVAERTGLSKGFLSRVERDGVSPSIDSLVAIADA 58 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + IG RL+ R+ +G+S + G+ LS E+ P I I + Sbjct: 6 FPIGERLRHAREQRGLSLAAVAERTGLSKGFLSRVERDGVSPSIDSLVAIADAVGLAVAD 65 Query: 172 IYFGDEVIVPKSIKR 186 ++ V+V +S+ R Sbjct: 66 VFAVAPVVVSRSVDR 80 >gi|228907976|ref|ZP_04071826.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228851642|gb|EEM96446.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 184 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +VG +I RK T K +A A+ S ++ E G+ + S++ + I Sbjct: 5 NVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPL 61 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++ + RK G++ +L + S LS E+G T P ++ + I Sbjct: 1 MNNINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 L-FNFFLEDTNTEELVVRANQRKK 83 >gi|229133280|ref|ZP_04262110.1| hypothetical protein bcere0014_21990 [Bacillus cereus BDRD-ST196] gi|228650191|gb|EEL06196.1| hypothetical protein bcere0014_21990 [Bacillus cereus BDRD-ST196] Length = 185 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + IK IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNIKAIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNIKAIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|255655114|ref|ZP_05400523.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451102|ref|ZP_06892844.1| DNA-binding protein [Clostridium difficile NAP08] gi|296880545|ref|ZP_06904507.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260109|gb|EFH06962.1| DNA-binding protein [Clostridium difficile NAP08] gi|296428499|gb|EFH14384.1| DNA-binding protein [Clostridium difficile NAP07] Length = 183 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 34/94 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +VG ++ +R+ + + + ++ + E G S ++ + + ++ Sbjct: 1 MDNKFPNVGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 I+F + + + + +L Sbjct: 61 INFTTLLNENTNTYEVIKKEEVEPIVEQQGNMKL 94 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R++ G+S + K+ G+ + L E+G + P + KI K + + Sbjct: 10 ENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLLNE 69 Query: 176 D----EVIVPKSIK 185 + EVI + ++ Sbjct: 70 NTNTYEVIKKEEVE 83 >gi|226328955|ref|ZP_03804473.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198] gi|225202141|gb|EEG84495.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198] Length = 125 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 31/78 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ R+ + K +A + + +ENG+C + ++ E +++ + Sbjct: 41 IGHKIRKQRQQLRLSAKVVAERVGISQQQFSRYENGLCKIDVDMLFHIAQELKVTPAFFL 100 Query: 92 DGEVIDRRYEDVTNKKRL 109 +T K+ Sbjct: 101 PPNEEQVSAVALTQSKQF 118 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 10/110 (9%) Query: 71 TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 S + + + Y W G + + + + G +++ R+ +S Sbjct: 8 PSQKLDIRIIEYY-----WWLIGRMRSLMSKIYPISQII-----GHKIRKQRQQLRLSAK 57 Query: 131 EFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 + +G+ S YE G ++ I Q K + +E V Sbjct: 58 VVAERVGISQQQFSRYENGLCKIDVDMLFHIAQELKVTPAFFLPPNEEQV 107 >gi|168702699|ref|ZP_02734976.1| putative transcriptional regulator [Gemmata obscuriglobus UQM 2246] Length = 84 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G R++++R+ +Q+ +A A + V+ E G + S+ L E+ Sbjct: 14 ERFGERLREVREGAGISQERLAELAGLHRTYVSSVERGKRNISLENIERLAVALEVEMAA 73 Query: 90 IYD 92 + Sbjct: 74 LMP 76 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RL+ +R+ G+SQ +L G+ + +S+ E+G+ ++ ++ + + Sbjct: 13 CERFGERLREVREGAGISQERLAELAGLHRTYVSSVERGKRNISLENIERLAVALEVEMA 72 Query: 171 WIY 173 + Sbjct: 73 ALM 75 >gi|90021251|ref|YP_527078.1| XRE family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950851|gb|ABD80866.1| conserved hypothetical protein [Saccharophagus degradans 2-40] Length = 175 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 32/79 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ +Q+E+A A S +++ E G S S+ + + IS + + Sbjct: 1 MGRKLMRLRQDRGLSQRELARRAEMTNSTLSMIEQGKVSPSVASLERILSAIPISLEAFF 60 Query: 92 DGEVIDRRYEDVTNKKRLD 110 R+D Sbjct: 61 SNSTAQVGVYKEQELARVD 79 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G +L +R+D+G+SQ E + M NSTLS EQG+ P + +I L+ + Sbjct: 1 MGRKLMRLRQDRGLSQRELARRAEMTNSTLSMIEQGKVSPSVASLERILSAIPISLEAFF 60 >gi|86739621|ref|YP_480021.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566483|gb|ABD10292.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 121 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEIS 86 + + +G RI+ R + ++A S ++ ENG S + + + E+ Sbjct: 6 HREPLGQRIRRARLDRQLSGVQLARRVGVHPSNISRIENGDTTSPTAELLQRIAHALELD 65 Query: 87 FDWIY 91 + Sbjct: 66 QAELL 70 Score = 47.6 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWIY 173 R++ R D+ +S ++ + +G+ S +S E G T P + ++I + + Sbjct: 12 QRIRRARLDRQLSGVQLARRVGVHPSNISRIENGDTTSPTAELLQRIAHALELDQAELL 70 >gi|44004571|ref|NP_982240.1| transcriptional regulator [Bacillus cereus ATCC 10987] gi|42741637|gb|AAS45082.1| transcriptional regulator [Bacillus cereus ATCC 10987] Length = 108 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 27/82 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ ++RK TQ +++ N + +E G + + + I D ++ Sbjct: 4 LSKRLAELRKKRGYTQADISHRLNIARTTYANWEYGKADPDADSIMRIAELHNIFIDELF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYA 113 + D A Sbjct: 64 GRNNPLESKLESIKVALADIPA 85 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK +G +Q + L + +T +N+E G+ P+ +I ++ +D Sbjct: 1 MSHLSKRLAELRKKRGYTQADISHRLNIARTTYANWEYGKADPDADSIMRIAELHNIFID 60 Query: 171 WIYFGDEVIVPK 182 ++ + + K Sbjct: 61 ELFGRNNPLESK 72 >gi|29347394|ref|NP_810897.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298385147|ref|ZP_06994706.1| hypothetical protein HMPREF9007_01800 [Bacteroides sp. 1_1_14] gi|29339294|gb|AAO77091.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298262291|gb|EFI05156.1| hypothetical protein HMPREF9007_01800 [Bacteroides sp. 1_1_14] Length = 73 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++ +IK R N +Q+E+A+ +N E G S AL + + + + Sbjct: 3 NKELLNKIKVYRAMKNISQEELAVAIGVTRKTINTVETGKFIPSTVLALRIARYFGVPVE 62 Query: 89 WIY 91 I+ Sbjct: 63 EIF 65 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + ++K R K +SQ E +G+ T++ E G+ IP A +I + Sbjct: 1 MENKELLNKIKVYRAMKNISQEELAVAIGVTRKTINTVETGKFIPSTVLALRIARYFGVP 60 Query: 169 LDWIY 173 ++ I+ Sbjct: 61 VEEIF 65 >gi|29171585|ref|NP_808631.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856078|gb|AAO59134.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] gi|320326981|gb|EFW82998.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882666|gb|EGH16815.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330945149|gb|EGH46863.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 117 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK + +Q +A V +E G+ + + + ++++ + Sbjct: 8 VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGELL 67 Query: 92 DG 93 G Sbjct: 68 PG 69 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 40/91 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +GA++K++RK GMSQ + +G + YE+G +P ++ KI + Sbjct: 7 FVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 66 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 G + ++ + + + K + D S Sbjct: 67 LPGGQDVLRTRLISLRQAIADKAIEVDSPES 97 >gi|28379010|ref|NP_785902.1| prophage Lp2 protein 10 [Lactobacillus plantarum WCFS1] gi|28271848|emb|CAD64753.1| prophage Lp2 protein 10 [Lactobacillus plantarum WCFS1] Length = 75 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R+A N TQ+E+A A + V ENG S L L + ++ D + G Sbjct: 4 KLKYYREAMNLTQEELARHAKVSVAMVQSMENGRRKGSTDTILKLSDALNVTVDDLLRGN 63 Query: 95 VIDRRYEDVTNK 106 + ++ T+K Sbjct: 64 NMTISHKKETSK 75 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK R+ ++Q E + + + + + E GR K+ +D + G+ Sbjct: 5 LKYYREAMNLTQEELARHAKVSVAMVQSMENGRRKGSTDTILKLSDALNVTVDDLLRGNN 64 Query: 178 VIVPKSIKRAK 188 + + + +K Sbjct: 65 MTISHKKETSK 75 >gi|307332662|ref|ZP_07611696.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306881694|gb|EFN12846.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 398 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 15/126 (11%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + G RI R+ + TQ+ +A+ AN +S ++ E G S + Sbjct: 3 QSIEEHTGARIARTRRERDLTQQGLAMRANVSKSLLSKVECGQRPASPSLIAACARALSV 62 Query: 86 SFDWIYDGEV-------------IDRRYEDVTNKKRLDPYAIGARLKSIR--KDKGMSQI 130 + + R LD + IR +K + Q Sbjct: 63 TTSDLLGQPYTQELRRERLDEVIQPIRVSMENWDIPLDWQVPARPVTLIRADMEKVLVQR 122 Query: 131 EFGKLL 136 + L Sbjct: 123 RQAEYL 128 Score = 39.6 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 20/61 (32%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GAR+ R+++ ++Q + S LS E G+ + + Sbjct: 8 HTGARIARTRRERDLTQQGLAMRANVSKSLLSKVECGQRPASPSLIAACARALSVTTSDL 67 Query: 173 Y 173 Sbjct: 68 L 68 >gi|262171043|ref|ZP_06038721.1| transcriptional regulator YidN, Cro/CI family [Vibrio mimicus MB-451] gi|261892119|gb|EEY38105.1| transcriptional regulator YidN, Cro/CI family [Vibrio mimicus MB-451] Length = 217 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K +RK+ + A ++ + E G S +I + + E SF Sbjct: 43 FKSQIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 102 Query: 88 DWIYDGEVI 96 + + Sbjct: 103 SAFFANDPQ 111 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK +RK KG+S +L G+ + L E+G + P I KI + Sbjct: 42 MFKSQIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 101 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 102 FSAFFANDPQLLSSE 116 >gi|258621267|ref|ZP_05716301.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] gi|258586655|gb|EEW11370.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] Length = 211 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K +RK+ + A ++ + E G S +I + + E SF Sbjct: 37 FKSQIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 96 Query: 88 DWIYDGEVI 96 + + Sbjct: 97 SAFFANDPQ 105 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK +RK KG+S +L G+ + L E+G + P I KI + Sbjct: 36 MFKSQIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 95 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 96 FSAFFANDPQLLSSE 110 >gi|229115222|ref|ZP_04244632.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228668362|gb|EEL23794.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] Length = 404 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ ++A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGAKIKTLRKEKKLTQTDLA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVIDRRYEDVT 104 + + ++ Sbjct: 63 EDDDVETIELIQQ 75 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K++RK+K ++Q + + S LS E G+ P +K + I + ++ Sbjct: 6 AKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLED 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + I+ + Q K +K D+ Sbjct: 65 DDVETIELIQ--QMEQLIKANKYDE 87 >gi|218248605|ref|YP_002373976.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061671|ref|YP_003139559.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218169083|gb|ACK67820.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] gi|256591837|gb|ACV02724.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 72 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K G R++ RK +Q ++A A + + E G + S+ L L + EI Sbjct: 6 KAFGMRVRYFRKLLGISQDDLAEKAGMHRTYIGAIERGERNVSLLNILRLADALEIKVKE 65 Query: 90 IYDGEVI 96 +++ ++ Sbjct: 66 LFNVDID 72 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A G R++ RK G+SQ + + GM + + E+G + ++ + + + Sbjct: 7 AFGMRVRYFRKLLGISQDDLAEKAGMHRTYIGAIERGERNVSLLNILRLADALEIKVKEL 66 Query: 173 YFGD 176 + D Sbjct: 67 FNVD 70 >gi|170016375|ref|YP_001727294.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803232|gb|ACA81850.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 245 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R + TQ+E A +V+ +E + L + + + D+ Sbjct: 3 IGIKIKQLRISQGLTQQEFADKLFISYQSVSNWERQKRHPTAEMMLTMIETFNLPLDFFI 62 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R +G++Q EF L + ++SN+E+ + P + + + LD+ Sbjct: 1 MHIGIKIKQLRISQGLTQQEFADKLFISYQSVSNWERQKRHPTAEMMLTMIETFNLPLDF 60 Query: 172 IY 173 Sbjct: 61 FI 62 >gi|218234393|ref|YP_002366467.1| DNA-binding protein [Bacillus cereus B4264] gi|218162350|gb|ACK62342.1| DNA-binding protein [Bacillus cereus B4264] Length = 404 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ +A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTALA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + ++ + K++ Sbjct: 63 EEDEGEIVELIQKMEQLIKANKCDEVYKTL 92 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 DE + + I++ + + K + K+ P Sbjct: 65 DEGEIVELIQKMEQLIKANKCDEVYKTLLP 94 >gi|123441160|ref|YP_001005148.1| putative transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088121|emb|CAL10909.1| putative transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 196 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R A + T K++A+ ES ++ EN + S S+ L + E + + Sbjct: 14 DLGMRLRHARVAQDITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDL 73 Query: 91 Y 91 Sbjct: 74 M 74 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 RL+ R + ++ + +G S LS E P + ++ + ++ + Sbjct: 17 MRLRHARVAQDITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLMAE 76 Query: 174 ---FGDEVIVPKSIKRAKGNQSSKK 195 V+ P+ R + +KK Sbjct: 77 SWVADSPVLKPEQRIRKRFMHRNKK 101 >gi|116333542|ref|YP_795069.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116098889|gb|ABJ64038.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 274 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K +R + +Q +A G +S ++ ENG + + + L +IS D + Sbjct: 4 QLGITLKQVRLQQHLSQATVATGI-CAQSMLSAIENGKYTPNATLLMRLCQRLKISLDQL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 E + N + L R +R+ Sbjct: 63 SLAENFTISDLEQINDR-LAKLCNHHRYADLREFL 96 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK +R + +SQ + S LS E G+ P ++ Q K LD + Sbjct: 9 LKQVRLQQHLSQATVATGI-CAQSMLSAIENGKYTPNATLLMRLCQRLKISLDQL 62 >gi|134298461|ref|YP_001111957.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051161|gb|ABO49132.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 64 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + +Q+++A + + E G + S++ + + + D I+ E Sbjct: 5 KMKSARAILDMSQEQLAEAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLDEIFWEE 64 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +KS R MSQ + + +G+ T+ E G+ P ++ I + K LD I++ + Sbjct: 6 MKSARAILDMSQEQLAEAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLDEIFWEE 64 >gi|328886799|emb|CCA60038.1| Transcriptional regulator, MerR family [Streptomyces venezuelae ATCC 10712] Length = 189 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 27/67 (40%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + PE +VG I+ RK + +A + + ++ E G+ + S+ + Sbjct: 1 MSRPEPTPEAIEVGRVIRSCRKQRGVSMAVLAARSGLSQPFLSQLERGLATPSLSSIYRI 60 Query: 80 RNEYEIS 86 +++ Sbjct: 61 AEALDVT 67 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++S RK +G+S G+ LS E+G P + +I + Sbjct: 17 IRSCRKQRGVSMAVLAARSGLSQPFLSQLERGLATPSLSSIYRIAEALDVTPGTFL 72 >gi|319939730|ref|ZP_08014087.1| XRE family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811068|gb|EFW07379.1| XRE family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 61 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +KD RK +Q ++A +N+ EN + ++ + L + + ++ Sbjct: 2 NHVKDFRKNLGLSQLDLAKQIGVSRQTINMIENNKYNPTLELCINLALALKTDLNTLF 59 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +K RK+ G+SQ++ K +G+ T++ E + P ++ + K L+ ++ Sbjct: 1 MNHVKDFRKNLGLSQLDLAKQIGVSRQTINMIENNKYNPTLELCINLALALKTDLNTLFL 60 Query: 175 G 175 Sbjct: 61 E 61 >gi|313115419|ref|ZP_07800889.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622260|gb|EFQ05745.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 268 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R +E+A +SA+ +E + + L + Y +S D++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + L + A LKS R + + Sbjct: 67 FCRTENRAEINTPLRELHLSD-EMVALLKSGRINNRLLCE 105 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 I RLK +R +KG+ E + G+ S L +YE+ + LD++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 66 Query: 173 YFGDEVIVP 181 + E Sbjct: 67 FCRTENRAE 75 >gi|291484905|dbj|BAI85980.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 113 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 4/101 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK RK + E+A A +S ++ E + SI++ + ++S + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 91 YDGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + D + + K D G K R+ Sbjct: 64 LDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQ 104 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDWIY 173 R+K RK+KG S E + G+ S LS+ E+ +T P I+ K+ V + + Sbjct: 6 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLL 64 >gi|260460388|ref|ZP_05808640.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034033|gb|EEW35292.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 202 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R + E+A A A++ E GM S ++ L +I + Sbjct: 19 VGRRVRALRLERGLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSALI 78 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 1/96 (1%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 D + K +G R++++R ++G+S E G+ LS E+G + +K Sbjct: 2 DMLDDAAEKPKDDADVRVGRRVRALRLERGLSLAELAAKAGVSIGALSQIERGMSSLRVK 61 Query: 157 PARKIKQVTKKHLDWIYF-GDEVIVPKSIKRAKGNQ 191 + + G++ + RA + Sbjct: 62 VIWPLAAALDIEPSALIADGNDAVNDLYCVRANSRR 97 >gi|227512586|ref|ZP_03942635.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227084201|gb|EEI19513.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 198 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 4/95 (4%) Query: 28 YWKDVG----TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + D+G ++ IR + +++ + + ++ EN S +I + Sbjct: 9 FTMDIGAIVSKNLRKIRLERGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGL 68 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + +G V + + R+ Sbjct: 69 NVPYTTLLEGRVETTKIIKKSAINEQKSADGHYRI 103 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ IR ++G S + +L G+ LS E T P I KI + G Sbjct: 19 KNLRKIRLERGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLNVPYTTLLEG 78 Query: 176 DEVIVPKSIKRAKGNQSS 193 K A Q S Sbjct: 79 RVETTKIIKKSAINEQKS 96 >gi|221234777|ref|YP_002517213.1| MerR family transcriptional regulator [Caulobacter crescentus NA1000] gi|220963949|gb|ACL95305.1| transcriptional regulator, MerR family [Caulobacter crescentus NA1000] Length = 480 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 24 EIRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 E +Q K + G R+K +R+ TQ MA S +NL E + + L L + Sbjct: 5 EKKQNDKKLFLGGRLKRLRRDLGVTQARMAEELGVSASYLNLLERNQRPVTAQILLRLAD 64 Query: 82 EYEISFDWI 90 Y++ + Sbjct: 65 AYDLDLRSL 73 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 LK +R+D G++Q + LG+ S L+ E+ + + ++ L Sbjct: 19 LKRLRRDLGVTQARMAEELGVSASYLNLLERNQRPVTAQILLRLADAYDLDL 70 >gi|152965329|ref|YP_001361113.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] gi|151359846|gb|ABS02849.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] Length = 516 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 + T +TP + +G I+D RK TQ ++A +SAV+ E G + SI Sbjct: 1 MAVSTEQMTP-SSDHLSQIGALIRDARKHRGLTQVQLAERLGTSQSAVHRMEQGQQNVSI 59 Query: 74 RYALYLRNEYE---ISF 87 + + + +S Sbjct: 60 DMLQRVGHALQDDIVSI 76 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 25/49 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ RK +G++Q++ + LG S + EQG+ I +++ + Sbjct: 22 IRDARKHRGLTQVQLAERLGTSQSAVHRMEQGQQNVSIDMLQRVGHALQ 70 >gi|327404285|ref|YP_004345123.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327319793|gb|AEA44285.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 121 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 37/95 (38%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + ++G +I+ R +Q+ +A+ + A E+G+ + A + NE Sbjct: 2 EQQITTLNLGIKIRFFRDMKGLSQQALAMQLGISQQAYQKIESGVTKLDVERANVIANEL 61 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + D++ + Y+ + ++ L Sbjct: 62 GVQLDFLISFSPANYWYQCTLSGNTVNNNIPKELL 96 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R KG+SQ LG+ E G T +++ A I LD++ Sbjct: 14 IRFFRDMKGLSQQALAMQLGISQQAYQKIESGVTKLDVERANVIANELGVQLDFLI 69 >gi|289549667|ref|YP_003470571.1| Transcriptional regulator, Cro/CI family [Staphylococcus lugdunensis HKU09-01] gi|315659694|ref|ZP_07912555.1| transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289179199|gb|ADC86444.1| Transcriptional regulator, Cro/CI family [Staphylococcus lugdunensis HKU09-01] gi|315495427|gb|EFU83761.1| transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 67 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G +Q + K G+ T+S E+ P I A KI ++ + ++ ++ Sbjct: 1 MRNRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAMKIARIFGESVEDVF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IIEEE 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q ++A A V+L E + SI A+ + + S + ++ Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAMKIARIFGESVEDVFII 62 Query: 94 EVID 97 E D Sbjct: 63 EEED 66 >gi|258626503|ref|ZP_05721343.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] gi|258581214|gb|EEW06123.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] Length = 180 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K +RK+ + A ++ + E G S +I + + E SF Sbjct: 6 FKSQIANQLKTLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 65 Query: 88 DWIYDGEVI 96 + + Sbjct: 66 SAFFANDPQ 74 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK++RK KG+S +L G+ + L E+G + P I KI + Sbjct: 5 MFKSQIANQLKTLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 64 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 65 FSAFFANDPQLLSSE 79 >gi|291288131|ref|YP_003504947.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885291|gb|ADD68991.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 141 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R +Q E+ N + ++ +E G + +EY I + Sbjct: 24 NIGIKIKELRAELGISQNELGQLLNVKQQVISYYEKGD-DIDASKLATISSEYNIDIRYF 82 Query: 91 YDGEVIDRRYEDVTNKK 107 + + + E Sbjct: 83 FSDKPLSYFRETFLEPN 99 Score = 41.9 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + IG ++K +R + G+SQ E G+LL + +S YE+G I + I Sbjct: 19 YILCMNIGIKIKELRAELGISQNELGQLLNVKQQVISYYEKGDDI-DASKLATISSEYNI 77 Query: 168 HLDWIYFGD 176 + + + Sbjct: 78 DIRYFFSDK 86 >gi|223985969|ref|ZP_03636002.1| hypothetical protein HOLDEFILI_03308 [Holdemania filiformis DSM 12042] gi|223962064|gb|EEF66543.1| hypothetical protein HOLDEFILI_03308 [Holdemania filiformis DSM 12042] Length = 268 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R +E+A +SA+ +E + + L + Y +S D++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + L + A LKS R + + Sbjct: 67 FCRTENRAEINTPLRELHLSD-EMVALLKSGRINNRLLCE 105 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 I RLK +R +KG+ E + G+ S L +YE+ + LD++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 66 Query: 173 YFGDEVIVP 181 + E Sbjct: 67 FCRTENRAE 75 >gi|218677789|ref|ZP_03525686.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 182 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+R++ +R A+ +Q+E+A S ++L E+ + S+ + + I Sbjct: 4 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEF 63 Query: 91 YDGEVIDRRY 100 + E R Sbjct: 64 FAFEPERPRK 73 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RL+ +R +SQ E K G+PNST+S E + P + ++I L + Sbjct: 7 SRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFFAF 66 Query: 176 DEVIVPKSIKRAKG 189 + K+ A+ Sbjct: 67 EPERPRKAFYAAEE 80 >gi|218704103|ref|YP_002411622.1| putative transcriptional regulator from phage origin [Escherichia coli UMN026] gi|218431200|emb|CAR12076.1| putative transcriptional regulator from phage origin [Escherichia coli UMN026] gi|323976890|gb|EGB71978.1| peptidase S24 [Escherichia coli TW10509] Length = 230 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 ++G R++ +R+A N ++A + ++ E G + + + + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIAD 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + +N + + R++ + Sbjct: 62 LFTSALKSNTVYKNSNNEDVAQVKDVFRIEML 93 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK-PARKIKQVTKKHLD 170 IG R++ +R+ K M + + +G+ + +S E G+ + I + + Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIA 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ + ++ + N+ + K Sbjct: 61 DLFT--SALKSNTVYKNSNNEDVAQVKD 86 >gi|209546895|ref|YP_002278813.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538139|gb|ACI58073.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 182 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+R++ +R A+ +Q+E+A S ++L E+ + S+ + + I Sbjct: 4 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEF 63 Query: 91 YDGEVIDRRY 100 + E R Sbjct: 64 FAFEPERPRK 73 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RL+ +R +SQ E K G+PNST+S E + P + ++I L + Sbjct: 7 SRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFFAF 66 Query: 176 DEVIVPKSIKRAKG 189 + K+ A+ Sbjct: 67 EPERPRKAFYAAEE 80 >gi|149203901|ref|ZP_01880869.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142343|gb|EDM30388.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 133 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 1/91 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R+ + +Q ++A + +EN + + +S W+ Sbjct: 17 FGDRVTGARERSGMSQSDLAKRLGVKLKTLKAWENDLSEPRANKLSMMAGMLNVSLLWLL 76 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 GE ++ R D + ++ IR Sbjct: 77 SGEGEGPGAPEMGELSR-DVMDMLTEIRDIR 106 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 R+ GMSQ + K LG+ TL +E + P + + L W+ G+ Sbjct: 24 ARERSGMSQSDLAKRLGVKLKTLKAWENDLSEPRANKLSMMAGMLNVSLLWLLSGE 79 >gi|15641970|ref|NP_231602.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590656|ref|ZP_01677990.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|121728635|ref|ZP_01681654.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|147674892|ref|YP_001217496.1| transcriptional regulator [Vibrio cholerae O395] gi|153217017|ref|ZP_01950781.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|153801860|ref|ZP_01956446.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|153819310|ref|ZP_01971977.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|153822466|ref|ZP_01975133.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|227082095|ref|YP_002810646.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] gi|229507941|ref|ZP_04397446.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae BX 330286] gi|229511823|ref|ZP_04401302.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae B33] gi|229515349|ref|ZP_04404809.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TMA 21] gi|229518960|ref|ZP_04408403.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC9] gi|229607486|ref|YP_002878134.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae MJ-1236] gi|254849056|ref|ZP_05238406.1| transcriptional regulator [Vibrio cholerae MO10] gi|255745280|ref|ZP_05419229.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholera CIRS 101] gi|262156005|ref|ZP_06029125.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae INDRE 91/1] gi|262167921|ref|ZP_06035621.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC27] gi|298497998|ref|ZP_07007805.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9656508|gb|AAF95116.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547499|gb|EAX57605.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|121629098|gb|EAX61543.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|124113941|gb|EAY32761.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|124122632|gb|EAY41375.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|126510130|gb|EAZ72724.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|126520042|gb|EAZ77265.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|146316775|gb|ABQ21314.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|227009983|gb|ACP06195.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] gi|227013865|gb|ACP10075.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|229343649|gb|EEO08624.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC9] gi|229348054|gb|EEO13013.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TMA 21] gi|229351788|gb|EEO16729.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae B33] gi|229355446|gb|EEO20367.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae BX 330286] gi|229370141|gb|ACQ60564.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae MJ-1236] gi|254844761|gb|EET23175.1| transcriptional regulator [Vibrio cholerae MO10] gi|255737110|gb|EET92506.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholera CIRS 101] gi|262023648|gb|EEY42349.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC27] gi|262030183|gb|EEY48827.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae INDRE 91/1] gi|297542331|gb|EFH78381.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 181 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K++RK+ + A ++ + E G S +I + + E SF Sbjct: 6 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 65 Query: 88 DWIYDGEVI 96 + + Sbjct: 66 SAFFANDPQ 74 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK++RK +G+S +L G+ + L E+G + P I KI + Sbjct: 5 MFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 64 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 65 FSAFFANDPQLLSSE 79 >gi|329941544|ref|ZP_08290809.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] gi|329299261|gb|EGG43161.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] Length = 190 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 24/73 (32%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ + + ++ R T +A A + E + S+ + + + Sbjct: 2 SDLDLLTQSLARNVRRWRAERGFTLDALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDA 61 Query: 83 YEISFDWIYDGEV 95 +S + D E Sbjct: 62 LGVSLPTLLDYEQ 74 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R ++G + G+ L EQ RT P + KI L + Sbjct: 13 RNVRRWRAERGFTLDALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSLPTLLDY 72 Query: 176 DE 177 ++ Sbjct: 73 EQ 74 >gi|295105300|emb|CBL02844.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 118 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RKA TQ ++A+ ++ + ENG + S + + +S D I Sbjct: 9 LGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVLPLSLDSII 68 Query: 92 DGEVID 97 + + + Sbjct: 69 NPNLSE 74 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G ++K++RK GM+Q + + ++N E G+ P I V L Sbjct: 5 DAIALGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVLPLSL 64 Query: 170 DWIY 173 D I Sbjct: 65 DSII 68 >gi|302552146|ref|ZP_07304488.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302469764|gb|EFL32857.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 286 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDQ 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHAFGD 94 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV-------E 68 Query: 176 DEVIVPKSIKRAKGNQ 191 D+ IV ++ AK ++ Sbjct: 69 DQRIVDSLMQMAKDSR 84 >gi|238018698|ref|ZP_04599124.1| hypothetical protein VEIDISOL_00542 [Veillonella dispar ATCC 17748] gi|313893193|ref|ZP_07826770.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] gi|237865169|gb|EEP66459.1| hypothetical protein VEIDISOL_00542 [Veillonella dispar ATCC 17748] gi|313442546|gb|EFR60961.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] Length = 153 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K R K+Q E+A +A++ +E G + L Y ++ D + D Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDELLD 63 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK R G SQIE K +G+ N+ LSNYE G P++ + + LD Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|229135978|ref|ZP_04264739.1| hypothetical protein bcere0014_48550 [Bacillus cereus BDRD-ST196] gi|229164110|ref|ZP_04292046.1| hypothetical protein bcere0009_48720 [Bacillus cereus R309803] gi|228619346|gb|EEK76236.1| hypothetical protein bcere0009_48720 [Bacillus cereus R309803] gi|228647520|gb|EEL03594.1| hypothetical protein bcere0014_48550 [Bacillus cereus BDRD-ST196] Length = 65 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEEIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|218694976|ref|YP_002402643.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|300823240|ref|ZP_07103372.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|331667806|ref|ZP_08368670.1| putative oxidoreductase/putative repressor [Escherichia coli TA271] gi|331677280|ref|ZP_08377962.1| putative oxidoreductase/putative repressor [Escherichia coli H591] gi|218351708|emb|CAU97423.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|300524204|gb|EFK45273.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|323170076|gb|EFZ55731.1| helix-turn-helix family protein [Escherichia coli LT-68] gi|331065391|gb|EGI37286.1| putative oxidoreductase/putative repressor [Escherichia coli TA271] gi|331075131|gb|EGI46444.1| putative oxidoreductase/putative repressor [Escherichia coli H591] Length = 178 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/123 (8%), Positives = 33/123 (26%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 + F + + ++ + + Q+ G + Sbjct: 61 VPFSTFISPPQPATPSVYDPQQHAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG 120 Query: 145 NYE 147 E Sbjct: 121 VIE 123 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 PATPSV 77 >gi|167759390|ref|ZP_02431517.1| hypothetical protein CLOSCI_01737 [Clostridium scindens ATCC 35704] gi|167662947|gb|EDS07077.1| hypothetical protein CLOSCI_01737 [Clostridium scindens ATCC 35704] Length = 117 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K +R N TQ +A N S + +E S L N + ++ D++ + Sbjct: 5 KKLKTLRLENEMTQDYVASRLNVARSTIAGYETKNRQPSHEKLAALANLFHVTIDYLLED 64 Query: 94 EV 95 + Sbjct: 65 DE 66 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +LK++R + M+Q L + ST++ YE P + + + +D+ Sbjct: 1 MSFSKKLKTLRLENEMTQDYVASRLNVARSTIAGYETKNRQPSHEKLAALANLFHVTIDY 60 Query: 172 IYFGDEVI 179 + DEVI Sbjct: 61 LLEDDEVI 68 >gi|160936303|ref|ZP_02083673.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] gi|158440772|gb|EDP18503.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 28/81 (34%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RIK +RK Q ++A + V +E G SI + + + Sbjct: 6 YSAIGQRIKTLRKRKGLNQTQLANLIGKSLRTVQKYETGEIEVSIDVVNEIAKHLDTTPT 65 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 +I E + + Sbjct: 66 FILGYETNTAPIRSLADIMSF 86 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 33/76 (43%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 D AIG R+K++RK KG++Q + L+G T+ YE G I +I + Sbjct: 1 MDNFDYSAIGQRIKTLRKRKGLNQTQLANLIGKSLRTVQKYETGEIEVSIDVVNEIAKHL 60 Query: 166 KKHLDWIYFGDEVIVP 181 +I + P Sbjct: 61 DTTPTFILGYETNTAP 76 >gi|124008859|ref|ZP_01693546.1| repressor [Microscilla marina ATCC 23134] gi|123985547|gb|EAY25439.1| repressor [Microscilla marina ATCC 23134] Length = 120 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D ++KDIR + +QKE+A+ + FENG S+ + + + Sbjct: 2 DFAKKLKDIRSKKSLSQKEVALSVGIDRGQYSRFENGKAEPSLATIKKIAQALNVKLSDL 61 Query: 91 Y 91 + Sbjct: 62 F 62 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK IR K +SQ E +G+ S +E G+ P + +KI Q L Sbjct: 1 MDFAKKLKDIRSKKSLSQKEVALSVGIDRGQYSRFENGKAEPSLATIKKIAQALNVKLSD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ ++ + S + + + D+ Sbjct: 61 LFAENDELDIDSYDKTLVEKIQLIEELDE 89 >gi|256786094|ref|ZP_05524525.1| DNA-binding protein [Streptomyces lividans TK24] gi|289769990|ref|ZP_06529368.1| DNA-binding protein [Streptomyces lividans TK24] gi|9857262|dbj|BAB11923.1| chitinase promoter binding protein 1 [Streptomyces lividans] gi|289700189|gb|EFD67618.1| DNA-binding protein [Streptomyces lividans TK24] Length = 285 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS-- 86 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDQ 70 Query: 87 --FDWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 71 RIVDSLM--QMAKDSRQQGWWHAFGD 94 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV-------E 68 Query: 176 DEVIVPKSIKRAKGNQ 191 D+ IV ++ AK ++ Sbjct: 69 DQRIVDSLMQMAKDSR 84 >gi|320105807|ref|YP_004181397.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924328|gb|ADV81403.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 95 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 R G R++++R++ N TQ MA S ++ E G S S+ + +++ Sbjct: 27 RDISSRFGRRLRELRQSRNLTQLAMAEQFGIDRSFISDVECGRKSISLPTLEVMALGFKL 86 Query: 86 SFDWIYDG 93 S I G Sbjct: 87 SLSDILRG 94 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G RL+ +R+ + ++Q+ + G+ S +S+ E GR + + K L I Sbjct: 33 FGRRLRELRQSRNLTQLAMAEQFGIDRSFISDVECGRKSISLPTLEVMALGFKLSLSDIL 92 Query: 174 FG 175 G Sbjct: 93 RG 94 >gi|294678407|ref|YP_003579022.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477227|gb|ADE86615.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 184 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 VG I+ +RK T K +A + ++ E G + S+R L ++ Sbjct: 2 RHHVGDDIRALRKTRGLTLKRLAADVGRSLGWLSQIERGQTTPSVRDLGLLAERLGVTLS 61 Query: 89 WIYDGEVIDRRYE 101 + + + + Sbjct: 62 FFFRSSGRAPQEQ 74 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +G ++++RK +G++ +G LS E+G+T P ++ + + L + Sbjct: 3 HHVGDDIRALRKTRGLTLKRLAADVGRSLGWLSQIERGQTTPSVRDLGLLAERLGVTLSF 62 Query: 172 IY 173 + Sbjct: 63 FF 64 >gi|292557937|gb|ADE30938.1| Transcriptional regulator, Cro/CI family [Streptococcus suis GZ1] Length = 190 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 16/113 (14%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS-IRYALYLRNEYEI 85 + G ++K R +Q E+A + +EN + L + Sbjct: 52 EITMTFGEKVKAERTKLGMSQDELAAKIGVTRRIIGSYENDKSRPRGMERYKKLAESLNV 111 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 + +++ + + K R+ +Q ++ G+ Sbjct: 112 NVNYLLSEDDAFIADVED---------------KYGRRGARQAQELLAEVTGL 149 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE-IKPARKIKQVTKKHLD 170 G ++K+ R GMSQ E +G+ + +YE ++ P ++ +K+ + +++ Sbjct: 55 MTFGEKVKAERTKLGMSQDELAAKIGVTRRIIGSYENDKSRPRGMERYKKLAESLNVNVN 114 Query: 171 WIYFGDEVIVPKSIKR 186 ++ D+ + + Sbjct: 115 YLLSEDDAFIADVEDK 130 >gi|264678072|ref|YP_003277979.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262208585|gb|ACY32683.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 139 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + ++ TR+K++R+ +Q+ +A + +E+G Y L + I Sbjct: 15 FVPNIATRLKEVREQLGLSQQALAERCGVSARSQRNYESGERLPDAAYLAEL-QQLGIDL 73 Query: 88 DWIYDGEVIDRRYEDVTNKKRL 109 D++ G ++ L Sbjct: 74 DYVLTGHRTPSVPALDAKERDL 95 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +R+ G+SQ + G+ + NYE G +P+ ++ Q LD++ G Sbjct: 23 LKEVREQLGLSQQALAERCGVSARSQRNYESGERLPDAAYLAEL-QQLGIDLDYVLTG 79 >gi|227485416|ref|ZP_03915732.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236546|gb|EEI86561.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 143 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++K +R N TQKE+AI + ++A+ +E G S S + + + + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALIN 63 Query: 93 GEVIDRRYED 102 E Sbjct: 64 HEPNSIFEIM 73 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + ++Q E G+ ++ + NYE G P + +KI + + Sbjct: 1 MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISA 60 Query: 172 IYFGD 176 + + Sbjct: 61 LINHE 65 >gi|226228890|ref|YP_002762996.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27] gi|226092081|dbj|BAH40526.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27] Length = 84 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 31 DVGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +G I+ +R A+ TQ+ +A V E + S+ AL L E+ I D Sbjct: 4 KIGNHIRQLRFAHGQMTQEALAQAVGITRQTVIALEAERYAPSLDLALRLAAEFGIGVDR 63 Query: 90 IYDGEVID 97 ++ D Sbjct: 64 VFFRRDAD 71 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 116 ARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ +R G M+Q + +G+ T+ E R P + A ++ +D ++F Sbjct: 7 NHIRQLRFAHGQMTQEALAQAVGITRQTVIALEAERYAPSLDLALRLAAEFGIGVDRVFF 66 >gi|218896717|ref|YP_002445128.1| DNA-binding protein [Bacillus cereus G9842] gi|218542568|gb|ACK94962.1| DNA-binding protein [Bacillus cereus G9842] Length = 404 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ ++A G+ +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGAKIKTLRKEKKLTQTDLA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVIDRRYEDVT 104 + + +++ Sbjct: 63 EDDDVEKIELIQQ 75 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K++RK+K ++Q + + S LS E G+ P +K + I + ++ Sbjct: 6 AKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLED 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + I+ + Q K +K D+ Sbjct: 65 DDVEKIELIQ--QMEQLIKANKYDE 87 >gi|146305289|ref|YP_001185754.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145573490|gb|ABP83022.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 182 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK 49 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDWIYF 174 L+SIRK KG+SQ E K G+ NST+S E+ P I +K V L + Sbjct: 7 LQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK---VLGGIPMSLVEFFS 63 Query: 175 GD 176 D Sbjct: 64 LD 65 >gi|56965322|ref|YP_177054.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911566|dbj|BAD66093.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 303 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+++R +Q+ ++ +SA++ ENG +I + ++ + D Sbjct: 5 IGMEIRNLRMKLGMSQENISSSV-VSQSAISKIENGKYIPNIIVLEAIASKLGVPVDHFL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 T + ++ ++ + + Sbjct: 64 TLSTSYNGEYIETTYEMIEQLSLHEEYEEL 93 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 1/89 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++++R GMSQ + + S +S E G+ IP I I +D Sbjct: 7 MEIRNLRMKLGMSQENISSSV-VSQSAISKIENGKYIPNIIVLEAIASKLGVPVDHFLTL 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + I+ ++ + N Sbjct: 66 STSYNGEYIETTYEMIEQLSLHEEYEELN 94 >gi|329849908|ref|ZP_08264754.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328841819|gb|EGF91389.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 182 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+ R+K R+ N + E+A + ++A+N EN S + + L + ++ Sbjct: 5 EDLAHRLKLERETRNWSLAELAQRSGVSKAAINKIENAQVSPTAVVLVKLAAAFGLTLAG 64 Query: 90 IY 91 + Sbjct: 65 LL 66 Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 109 LDPYAIGAR-LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D A LK R+ + S E + G+ + ++ E + P K+ Sbjct: 1 MDILEDLAHRLKLERETRNWSLAELAQRSGVSKAAINKIENAQVSPTAVVLVKLAAAFGL 60 Query: 168 HLDWIY 173 L + Sbjct: 61 TLAGLL 66 >gi|293402420|ref|ZP_06646556.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304083|gb|EFE45336.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 72 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK R + +Q+E+A + L E G + SI+ + + D ++ E Sbjct: 5 KIKMARMELDMSQEELAKKVGATRQTIGLIEAGRYNPSIKLCINICIALHKHLDDLFWDE 64 Query: 95 VIDRRY 100 D+ Sbjct: 65 SYDKEE 70 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R + MSQ E K +G T+ E GR P IK I KHLD +++ + Sbjct: 6 IKMARMELDMSQEELAKKVGATRQTIGLIEAGRYNPSIKLCINICIALHKHLDDLFWDES 65 Query: 178 VIVPK 182 + Sbjct: 66 YDKEE 70 >gi|302384441|ref|YP_003820264.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302195069|gb|ADL02641.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 72 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+++R TQ ++A + E G S S+ A + + + + Sbjct: 8 IRNRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAAVFGVEITAV 67 Query: 91 YDGE 94 + + Sbjct: 68 FQWD 71 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 114 IGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R++ +R G M+Q + +GM T+ EQG+ P ++ A +I V + + Sbjct: 8 IRNRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAAVFGVEITAV 67 Query: 173 YFGD 176 + D Sbjct: 68 FQWD 71 >gi|260598023|ref|YP_003210594.1| HTH-type transcriptional regulator YdcN [Cronobacter turicensis z3032] gi|260217200|emb|CBA31069.1| Uncharacterized HTH-type transcriptional regulator ydcN [Cronobacter turicensis z3032] Length = 204 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 1/91 (1%) Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYA-IGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 S D I +R+D A + LK++R+ K S + + G+ + L Sbjct: 5 TSTDSIIVRYNAQGAILATIKGERMDITAHLAQTLKALRQQKNWSLTQAAQETGVSKAML 64 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 E+ + P + KI Sbjct: 65 GQIERNESSPTVATLWKIATGFNVPFSVFIT 95 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 22/66 (33%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 I E + +K +R+ N + + A ++ + E S ++ + Sbjct: 24 IKGERMDITAHLAQTLKALRQQKNWSLTQAAQETGVSKAMLGQIERNESSPTVATLWKIA 83 Query: 81 NEYEIS 86 + + Sbjct: 84 TGFNVP 89 >gi|299822624|ref|ZP_07054510.1| transcriptional regulator [Listeria grayi DSM 20601] gi|299816153|gb|EFI83391.1| transcriptional regulator [Listeria grayi DSM 20601] Length = 128 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQL-ESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+ +R+ ++ E A S +E G+ ++ + Y++S D++ Sbjct: 4 LSQRLTLLRENQGWSKAETARRLGLKAPSTYGNWEYGIREPDLQMVANIAELYDVSVDYL 63 Query: 91 YDGEVIDRRYEDVTN 105 + +V N Sbjct: 64 IGQDDETDAQGNVLN 78 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 121 IRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R+++G S+ E + LG+ ST N+E G P+++ I ++ +D++ D+ Sbjct: 11 LRENQGWSKAETARRLGLKAPSTYGNWEYGIREPDLQMVANIAELYDVSVDYLIGQDDET 70 Query: 180 VPK 182 + Sbjct: 71 DAQ 73 >gi|210614628|ref|ZP_03290239.1| hypothetical protein CLONEX_02453 [Clostridium nexile DSM 1787] gi|210150618|gb|EEA81627.1| hypothetical protein CLONEX_02453 [Clostridium nexile DSM 1787] Length = 118 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK + TQ+E+A ++ + E G + S L +S D + Sbjct: 9 LGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPLSLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + ++ N+ ++ + + +R+ E K L Sbjct: 69 N--PNVSPEDEGANQMKMLYCSCPS---EMRETLLHHTQETAKEL 108 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK K ++Q E L + +++ E+G+ P + + +V L Sbjct: 5 DLTALGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPLSL 64 Query: 170 DWIYFGDEVIVPKSIKRAKG 189 D + + + + K Sbjct: 65 DTLINPNVSPEDEGANQMKM 84 >gi|84686278|ref|ZP_01014173.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665805|gb|EAQ12280.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 463 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 34/119 (28%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++++ R TQK A +N EN S L L E+ + Sbjct: 9 GVKLRETRTRLGLTQKAFAEKLGVSLPYLNQMENNNRPVSTGVVLALAQEFGFDVAELST 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G+ + + +R + L + + +E+ + Sbjct: 69 GDAERLVTDMREALADPVFADAAPPIADLRLVASNAPALARAFLEIHRAYRQGHERLAS 127 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ R G++Q F + LG+ L+ E + Q + + GD Sbjct: 12 LRETRTRLGLTQKAFAEKLGVSLPYLNQMENNNRPVSTGVVLALAQEFGFDVAELSTGDA 71 Query: 178 VIVPKSIKRA 187 + ++ A Sbjct: 72 ERLVTDMREA 81 >gi|327193279|gb|EGE60185.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 220 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+R++ +R A+ +Q+E+A S ++L E+ + S+ + + I Sbjct: 42 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEF 101 Query: 91 YDGEVIDRRY 100 + E + Sbjct: 102 FAFEPERPKK 111 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 1/112 (0%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + +GE D N + IG+RL+ +R +SQ E K G+PNST+S E Sbjct: 20 LNNGEDRVCDILDNANGSIM-SVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESN 78 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + P + ++I L + + K+ A+ K K Sbjct: 79 ASNPSVGALKRILDGIPIGLAEFFAFEPERPKKAFYAAEELVEIGKGAISYK 130 >gi|295115925|emb|CBL36772.1| Helix-turn-helix. [butyrate-producing bacterium SM4/1] Length = 273 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 4/103 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM---CSTSIRYALYLRNEYEISFDWI 90 R+KD+R +E+A +SA+ +EN + L L + Y++S D++ Sbjct: 9 ERLKDLRVERGLNLEELAQETGISKSALGSYENDNDEYKEINHGSLLKLADFYQVSVDYL 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 R + L + LKS R + + Sbjct: 69 LGLTNNRRYENTPIEELHLSD-EVVELLKSERFNNRLLCEIIS 110 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG---RTIPEIKPARKIKQVTKKH 168 ++ RLK +R ++G++ E + G+ S L +YE K+ + Sbjct: 5 ISVQERLKDLRVERGLNLEELAQETGISKSALGSYENDNDEYKEINHGSLLKLADFYQVS 64 Query: 169 LDWIY 173 +D++ Sbjct: 65 VDYLL 69 >gi|291545610|emb|CBL18718.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 118 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 4/108 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK TQ+E++ ++ + E G + S L IS D + Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 + +V ++ N+ ++ + ++ +Q +L + Sbjct: 69 NPDVS--LEDEGVNQMKMLYSSCPPEMRD--TLLHHTQETVRELTELS 112 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK+K ++Q E L + ++N E+G+ P R + +V L Sbjct: 5 DLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISL 64 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSS 193 D + D + + + + K SS Sbjct: 65 DTLINPDVSLEDEGVNQMKMLYSS 88 >gi|291435798|ref|ZP_06575188.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291338693|gb|EFE65649.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 204 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V +++ +R+ + T + A A + ++ E G S+ L L Y + + Sbjct: 16 VAPQLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPMLLSLARTYGTTVSELL 75 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 24/57 (42%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +L+++R+ ++ + G+ + LS E G+ P + + + + + Sbjct: 19 QLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPMLLSLARTYGTTVSELL 75 >gi|269217074|ref|ZP_06160928.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269129211|gb|EEZ60296.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 112 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 5/101 (4%) Query: 37 KDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 K+ RK +Q + A +E G S A+ + + Y S D++ Sbjct: 6 KEARKHAGLSQDDAARALGIPSRTFGSWERGEREISAVDAMRIADIYGCSLDYLAGRISW 65 Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 + K+ + + + + M LLG Sbjct: 66 EEERALARKKRVIGSFDALTD-----QAQKMLVDYCAVLLG 101 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 K RK G+SQ + + LG+P+ T ++E+G A +I + LD++ Sbjct: 6 KEARKHAGLSQDDAARALGIPSRTFGSWERGEREISAVDAMRIADIYGCSLDYL 59 >gi|265995718|ref|ZP_06108275.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|262767002|gb|EEZ12620.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] Length = 642 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY-DG 93 + +RK T +A ++ +A++ ENG + + L N I F + Sbjct: 2 NLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELVGAR 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL--LGMP 139 ++ D + + +D +++ D + G+ Sbjct: 62 NDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVS 109 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK +G++ +L + + +S E G P ++ + + Sbjct: 1 MNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58 >gi|261256870|ref|ZP_05949403.1| putative repressor protein of prophage [Escherichia coli O157:H7 str. FRIK966] Length = 217 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R++ RK+ ++Q L G+ T++ +E+ P + + K Sbjct: 1 MMNMSDRIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQPNGANLQALANALKCDPL 60 Query: 171 WIYFGDEVIVPK 182 W+ G PK Sbjct: 61 WLVSGKGSPEPK 72 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 27/80 (33%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ RI+ RK N TQ+ +A V +E + L N + Sbjct: 1 MMNMSDRIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQPNGANLQALANALKCDPL 60 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 W+ G+ ++ + Sbjct: 61 WLVSGKGSPEPKINLKPEIF 80 >gi|239927456|ref|ZP_04684409.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 207 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V +++ +R+ + T + A A + ++ E G S+ L L Y + + Sbjct: 19 VAPQLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPMLLSLARTYGTTVSELL 78 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 24/57 (42%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +L+++R+ ++ + G+ + LS E G+ P + + + + + Sbjct: 22 QLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPMLLSLARTYGTTVSELL 78 >gi|229823422|ref|ZP_04449491.1| hypothetical protein GCWU000282_00720 [Catonella morbi ATCC 51271] gi|229787197|gb|EEP23311.1| hypothetical protein GCWU000282_00720 [Catonella morbi ATCC 51271] Length = 71 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R++++R++ +Q +A +NL EN + S+ L L E + ++ Sbjct: 2 NRVRELRQSRKLSQLALAKEVGVARQTINLIENDKYNPSLDLCLKLAYALETDLNTLF 59 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 33/69 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ +R+ + +SQ+ K +G+ T++ E + P + K+ + L+ +++ Sbjct: 1 MNRVRELRQSRKLSQLALAKEVGVARQTINLIENDKYNPSLDLCLKLAYALETDLNTLFW 60 Query: 175 GDEVIVPKS 183 E+ + Sbjct: 61 EVELHESTT 69 >gi|191174537|ref|ZP_03036034.1| regulatory protein [Escherichia coli F11] gi|300992733|ref|ZP_07180010.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|190905183|gb|EDV64825.1| regulatory protein [Escherichia coli F11] gi|300305229|gb|EFJ59749.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|324015072|gb|EGB84291.1| peptidase S24-like domain protein [Escherichia coli MS 60-1] Length = 230 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 ++G R++ +R+A N ++A + ++ E G + + + + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIAD 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + +N + + R++ + Sbjct: 62 LFTSALKSNTVYKNSNDEDVAQVKDVFRIEML 93 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK-PARKIKQVTKKHLD 170 IG R++ +R+ K M + + +G+ + +S E G+ + I + + Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIA 60 Query: 171 WIYF 174 ++ Sbjct: 61 DLFT 64 >gi|190894990|ref|YP_001985283.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700651|gb|ACE94733.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 203 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+R++ +R A+ +Q+E+A S ++L E+ + S+ + + I Sbjct: 25 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEF 84 Query: 91 YDGEVIDRRY 100 + E + Sbjct: 85 FAFEPERPKK 94 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 1/112 (0%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + E D N + IG+RL+ +R +SQ E K G+PNST+S E Sbjct: 3 LNNEEDRVCDILDNANGSIM-SVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESN 61 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + P + ++I L + + K+ A+ K K Sbjct: 62 ASNPSVGALKRILDGIPIGLAEFFAFEPERPKKAFYAAEELVEIGKGAISYK 113 >gi|167465684|ref|ZP_02330773.1| Predicted transcriptional regulator with an addtional conserved domain [Paenibacillus larvae subsp. larvae BRL-230010] Length = 355 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 14/144 (9%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ K + R+ + R+A T ++A A++ +E + + L + + Sbjct: 6 RFSKFIPDRLIEAREARGFTLTDLANIVEISHQAISKYEKEKATPNHDTLEKLSDALHVP 65 Query: 87 FDWIYDGEVIDRRYEDVTNKKRL-------DPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 + Y + + +K I K + Q L +P Sbjct: 66 VTYFYKSYPKKVDGVIYFRSMAMATRKSKNIHLHKISWIKEI--HKYLEQYFNFPKLNVP 123 Query: 140 NSTLSNYEQGRTIPE-IKPARKIK 162 + P + +I Sbjct: 124 QF----ITRQEYYPTPFEEIDQIA 143 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RL R+ +G + + ++ + + +S YE+ + P K+ + + Sbjct: 10 FIPDRLIEAREARGFTLTDLANIVEISHQAISKYEKEKATPNHDTLEKLSDALHVPVTYF 69 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSK 197 Y V I +++KSK Sbjct: 70 YKSYPKKVDGVIYFRSMAMATRKSK 94 >gi|163789431|ref|ZP_02183870.1| transcription regulator [Carnobacterium sp. AT7] gi|159875285|gb|EDP69350.1| transcription regulator [Carnobacterium sp. AT7] Length = 68 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K +RK +SQ E K+ + T++ E + P ++ A I V +D ++ Sbjct: 1 MENHIKELRKIAQLSQEELAKICKVSRQTINAIENDKYDPTLQLAFNIASVLGTTIDNLF 60 Query: 174 FGDEVIVP 181 +E++ Sbjct: 61 INNEIVKK 68 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK++RK +Q+E+A +N EN +++ A + + + D ++ Sbjct: 3 NHIKELRKIAQLSQEELAKICKVSRQTINAIENDKYDPTLQLAFNIASVLGTTIDNLF 60 >gi|46402122|ref|YP_006616.1| Gp36 [Klebsiella phage phiKO2] gi|40218266|gb|AAR83052.1| Gp36 [Klebsiella phage phiKO2] Length = 202 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 23/71 (32%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K R T K++A V E G S+ L L + WI Sbjct: 9 GERLKARRLELKMTLKQVAESVGISLPGVQNLERGDVMPSLEIGLALAKCLRMPVQWILY 68 Query: 93 GEVIDRRYEDV 103 G D V Sbjct: 69 GTESDPDRVPV 79 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RLK+ R + M+ + + +G+ + N E+G +P ++ + + + + Sbjct: 5 MKTRGERLKARRLELKMTLKQVAESVGISLPGVQNLERGDVMPSLEIGLALAKCLRMPVQ 64 Query: 171 WIYFGDEVIVPKS 183 WI +G E + Sbjct: 65 WILYGTESDPDRV 77 >gi|23502705|ref|NP_698832.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|261754250|ref|ZP_05997959.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|23348718|gb|AAN30747.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] gi|261744003|gb|EEY31929.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] Length = 642 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY-DG 93 + +RK T +A ++ +A++ ENG + + L N I F + Sbjct: 2 NLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELVGAR 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL--LGMP 139 ++ D + + +D +++ D + G+ Sbjct: 62 NDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVS 109 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK +G++ +L + + +S E G P ++ + + Sbjct: 1 MNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58 >gi|82700630|ref|YP_415204.1| SAM-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|260168049|ref|ZP_05754860.1| SAM-binding motif-containing protein [Brucella sp. F5/99] gi|260884562|ref|ZP_05896176.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261219422|ref|ZP_05933703.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261222969|ref|ZP_05937250.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261315797|ref|ZP_05954994.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261316343|ref|ZP_05955540.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261322485|ref|ZP_05961682.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261325879|ref|ZP_05965076.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261750997|ref|ZP_05994706.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|265987413|ref|ZP_06099970.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265991880|ref|ZP_06104437.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265998928|ref|ZP_06111485.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294851095|ref|ZP_06791771.1| SAM-binding domain-containing protein-containing protein [Brucella sp. NVSL 07-0026] gi|82616731|emb|CAJ11816.1| SAM (and some other nucleotide) binding motif:Helix-turn-helix motif [Brucella melitensis biovar Abortus 2308] gi|260874090|gb|EEX81159.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260921553|gb|EEX88206.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260924511|gb|EEX91079.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261295175|gb|EEX98671.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261295566|gb|EEX99062.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261301859|gb|EEY05356.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261304823|gb|EEY08320.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261740750|gb|EEY28676.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|262553617|gb|EEZ09386.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|263002836|gb|EEZ15239.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|264659610|gb|EEZ29871.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294821738|gb|EFG38734.1| SAM-binding domain-containing protein-containing protein [Brucella sp. NVSL 07-0026] gi|326409859|gb|ADZ66924.1| transcriptional regulator, Cro/CI family [Brucella melitensis M28] gi|326539572|gb|ADZ87787.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 642 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY-DG 93 + +RK T +A ++ +A++ ENG + + L N I F + Sbjct: 2 NLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELVGAR 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL--LGMP 139 ++ D + + +D +++ D + G+ Sbjct: 62 NDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVS 109 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK +G++ +L + + +S E G P ++ + + Sbjct: 1 MNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58 >gi|21222594|ref|NP_628373.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256786334|ref|ZP_05524765.1| DNA-binding protein [Streptomyces lividans TK24] gi|9857155|emb|CAC04034.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 141 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 8 NLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R++ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 11 EYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 68 >gi|312891075|ref|ZP_07750598.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296383|gb|EFQ73529.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 116 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +++G IK +R +Q + A A + ENG+ + + ++S Sbjct: 1 MQELGKNIKLLRHEKGWSQSDFAAKLGISVPAFSKIENGLTDLHLSRLNNIAKILDMSIV 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + + V N + + +K+ + Q + Sbjct: 61 ELLS------FQKSVRNNDANELDSAKESIKNYMEQILNLQKQV 98 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +K +R +KG SQ +F LG+ S E G T + I ++ + Sbjct: 1 MQELGKNIKLLRHEKGWSQSDFAAKLGISVPAFSKIENGLTDLHLSRLNNIAKILDMSIV 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + + + + S K+ + Sbjct: 61 ELLSFQKSVRNNDANELDSAKESIKNYME 89 >gi|295102573|emb|CBL00118.1| Predicted transcriptional regulator [Faecalibacterium prausnitzii L2-6] Length = 138 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS-IRYALYLRNEYEISFDWIY 91 R+K+ R N TQ E+A A + +E G S + + + + +++ Sbjct: 5 ERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTMQKIADALNTTTEYLL 63 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE-IKPARKIKQVTKKHLD 170 RLK R + ++Q+E + G+ T+ NYE G P + +KI + Sbjct: 1 MVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTMQKIADALNTTTE 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|295102032|emb|CBK99577.1| DNA ligase N terminus./Helix-turn-helix [Faecalibacterium prausnitzii L2-6] Length = 268 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R +E+A +SA+ +E + + L + Y +S D++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + L + A LKS R + + Sbjct: 67 FCRTENRAEINTPLRELHLSD-EMVALLKSGRINNRLLCE 105 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 I RLK +R +KG+ E + G+ S L +YE+ + LD++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 66 Query: 173 YFGDEVIVP 181 + E Sbjct: 67 FCRTENRAE 75 >gi|228921209|ref|ZP_04084538.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838424|gb|EEM83736.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 184 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +VG +I RK T K +A A+ S ++ E G+ + S++ + I Sbjct: 5 NVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPL 61 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++ + RK G++ +L + S LS E+G T P ++ + I Sbjct: 1 MNNINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 L-FNFFLEDTNTEELVVRANQRKK 83 >gi|190570721|ref|YP_001975079.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356993|emb|CAQ54382.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 304 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 1/97 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG ++K+ R TQK++A + +E G SI + IS + Sbjct: 12 EVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEALSISITDL 71 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 E + Y + +RK + Sbjct: 72 IPISKSCLEDEGEEILNLVREYKKIND-QELRKMFCL 107 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 32/83 (38%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 I ++ + +G +IK+ R TQK++A N ++ +E G + + + Sbjct: 153 IEEKVGSIYCQIGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRTAVPLDKLYEMA 212 Query: 81 NEYEISFDWIYDGEVIDRRYEDV 103 I+ + + E+ Sbjct: 213 EALSINITDLLIEKDEGSTVENE 235 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 7/125 (5%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 +S D I + E + K IG ++K R + +Q + + + + Sbjct: 135 GVSVD-IVSQAIGLSADECIEEKVGSIYCQIGKKIKEWRLVREYTQKDLAEKMNTTRDEI 193 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD------EVIVPKSIKRAKGNQSSKKSK 197 SNYEQGRT + ++ + ++ + E +P IK K +S + Sbjct: 194 SNYEQGRTAVPLDKLYEMAEALSINITDLLIEKDEGSTVENELPDLIKEYKEIESQELRN 253 Query: 198 KDKKS 202 KS Sbjct: 254 ALIKS 258 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +K LD +G ++K+ R ++G +Q + + +G+ + YE+G I+ I + Sbjct: 6 EKSLDC-EVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEAL 64 Query: 166 KKHLDWIY 173 + + Sbjct: 65 SISITDLI 72 >gi|91792424|ref|YP_562075.1| transciptional regulator [Shewanella denitrificans OS217] gi|91714426|gb|ABE54352.1| transcriptional regulator [Shewanella denitrificans OS217] Length = 195 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R+AN+++ + +A + S ++ E+G S +I L + IS + Sbjct: 16 IGLFIRSFRQANHESLQSLADRSGVSRSMISQIESGQKSPTIMILAKLADAMSISLEDFI 75 Query: 92 D 92 Sbjct: 76 K 76 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG ++S R+ S G+ S +S E G+ P I K+ Sbjct: 11 MNFDYIGLFIRSFRQANHESLQSLADRSGVSRSMISQIESGQKSPTIMILAKLADAMSIS 70 Query: 169 LDWIYF 174 L+ Sbjct: 71 LEDFIK 76 >gi|54296142|ref|YP_122511.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris] gi|53749927|emb|CAH11312.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris] Length = 227 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G RI + RKA T K + A ++ + +E G+ + L ++S Sbjct: 8 KEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLARALDVSPA 67 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 ++ + ++++ N +L P + G G + + ST Sbjct: 68 YLMCL-SDELQFKEAKNPSQLIPLLDYRQACEASLHTG--AESSGDKVFISVST 118 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+ RK KG++ G+L G + + L+N+EQG P + + + + + Sbjct: 9 EIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLARALDVSPAY 68 Query: 172 IYFGDEVIVPKSIKR 186 + + + K K Sbjct: 69 LMCLSDELQFKEAKN 83 >gi|47569649|ref|ZP_00240325.1| predicted transcriptional regulator [Bacillus cereus G9241] gi|47553691|gb|EAL12066.1| predicted transcriptional regulator [Bacillus cereus G9241] Length = 116 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 39/90 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+IR +Q+ A + V+L E+G S + N IS D++ Sbjct: 6 IGIRVKEIRNNLAMSQQSFADAIEVSKGMVSLIESGKKKPSRETVSKISNLGNISADYVM 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E +++ + + + ++++ + Sbjct: 66 GLSNYKNLDESQSSEVKTQLHDMISKIEKL 95 Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K IR + MSQ F + + +S E G+ P + KI + D++ Sbjct: 10 VKEIRNNLAMSQQSFADAIEVSKGMVSLIESGKKKPSRETVSKISNLGNISADYVM 65 >gi|328477026|gb|EGF47309.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 106 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 37/75 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IKD R+A +++E+A N V+ +E G+ +I+ + + + E+S D + Sbjct: 3 IGEQIKDRREALAWSKEELAQAVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 92 DGEVIDRRYEDVTNK 106 + ++ + Sbjct: 63 QSDPKLQKTIQIDKN 77 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K R+ S+ E + + +S +E+G + P IK I + LD Sbjct: 1 MPIGEQIKDRREALAWSKEELAQAVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDN 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + D PK K + ++++K++ Sbjct: 61 LIQSD----PKLQKTIQIDKNAKEASD 83 >gi|323963980|gb|EGB59472.1| helix-turn-helix protein [Escherichia coli M863] gi|327254078|gb|EGE65707.1| helix-turn-helix family protein [Escherichia coli STEC_7v] Length = 178 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLTRFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|319793353|ref|YP_004154993.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315595816|gb|ADU36882.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 89 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + +D G ++ +R+AN +Q+++A ++ S V E G SI A L Sbjct: 1 MKAFVEDFGVTVRQLREANGWSQEQLAERSDLNRSYVGEVERGRVIPSIVTAQKLATALG 60 Query: 85 ISF 87 I+ Sbjct: 61 INI 63 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +R+ G SQ + + + S + E+GR IP I A+K+ ++ + E Sbjct: 12 VRQLREANGWSQEQLAERSDLNRSYVGEVERGRVIPSIVTAQKLATALGINIVNLLARCE 71 Query: 178 VIVPKSIKR 186 + + R Sbjct: 72 QLEQSRLAR 80 >gi|300939145|ref|ZP_07153832.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300455960|gb|EFK19453.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 178 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLTRFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|301017870|ref|ZP_07182512.1| helix-turn-helix protein [Escherichia coli MS 69-1] gi|300399967|gb|EFJ83505.1| helix-turn-helix protein [Escherichia coli MS 69-1] Length = 178 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLTRFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|291522416|emb|CBK80709.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 114 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ + QKE+A N ++ VN ++ S S + + + +S D++ Sbjct: 3 IGERVFFLLDKYAIQQKELADAINVSKATVNGWKTRKGSPSSDLIVPIAKFFHVSTDYLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 G + R + +++ I ++ R+ Sbjct: 63 TGSEAESRILSLEDEE---WLNIVHQIPEDRQ 91 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 20/51 (39%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + Q E + + +T++ ++ + P I + D++ G E Sbjct: 16 IQQKELADAINVSKATVNGWKTRKGSPSSDLIVPIAKFFHVSTDYLLTGSE 66 >gi|293409776|ref|ZP_06653352.1| conserved hypothetical protein [Escherichia coli B354] gi|291470244|gb|EFF12728.1| conserved hypothetical protein [Escherichia coli B354] gi|323976926|gb|EGB72013.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 178 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLTRFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|288905859|ref|YP_003431081.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288732585|emb|CBI14157.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 136 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 29/66 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +RK N TQ+++A+ ++ +E +I+ + L + + D + Sbjct: 9 ENLTWLRKINRLTQEQLALKVGVSRESIAKWETKRVEPAIKNLVKLAEVFNVGVDKLLGV 68 Query: 94 EVIDRR 99 ++ D + Sbjct: 69 KIEDNQ 74 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK ++Q + +G+ +++ +E R P IK K+ +V +D + Sbjct: 7 FMENLTWLRKINRLTQEQLALKVGVSRESIAKWETKRVEPAIKNLVKLAEVFNVGVDKLL 66 >gi|260914375|ref|ZP_05920844.1| xre family toxin-antitoxin system [Pasteurella dagmatis ATCC 43325] gi|260631476|gb|EEX49658.1| xre family toxin-antitoxin system [Pasteurella dagmatis ATCC 43325] Length = 111 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 39/91 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I RLK I + KGMS EF +L G+ + NY P ++ KI + + W Sbjct: 1 MCISDRLKQILEVKGMSIKEFSELTGISYRSAMNYLNEGRDPNVEGLVKIHEALGISITW 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + G + + K + + +K D +S Sbjct: 61 LLTGKGAMFQSATKESDMSNQEEKLITDYRS 91 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 7/97 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K I + + KE + + + N ++ + + IS W+ Sbjct: 3 ISDRLKQILEVKGMSIKEFSELTGISYRSAMNYLNEGRDPNVEGLVKIHEALGISITWLL 62 Query: 92 DGEVIDRRYEDVTNKKRL-------DPYAIGARLKSI 121 G+ + + D ++ +K+ Sbjct: 63 TGKGAMFQSATKESDMSNQEEKLITDYRSMPENIKNA 99 >gi|255037817|ref|YP_003088438.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254950573|gb|ACT95273.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 109 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + D G+ + +R+ +Q+ + N S +N EN I+ L N ++ Sbjct: 21 KHTMTDFGSNFRKLREWAGLSQEALGASLNVSASVINRIENNKRRLDIQILQNLANALQL 80 Query: 86 SF 87 Sbjct: 81 DV 82 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 37/102 (36%), Gaps = 4/102 (3%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + + K + G+ + +R+ G+SQ G L + S ++ E Sbjct: 3 LAIWGFQKAAKFVKSLKNKHTMTDFGSNFRKLREWAGLSQEALGASLNVSASVINRIENN 62 Query: 150 RTIPEIKPARKIKQVTKKH----LDWIYFGDEVIVPKSIKRA 187 + +I+ + + + + ++ G + + ++A Sbjct: 63 KRRLDIQILQNLANALQLDVALVVAVMFKGKSALPKQRAEKA 104 >gi|229149987|ref|ZP_04278212.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|228633425|gb|EEK90029.1| Transcriptional regulator, Xre [Bacillus cereus m1550] Length = 404 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ +A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTALA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + ++ + K++ Sbjct: 63 EEDEGEIVELIQKMEQLIKANKCDEVYKTL 92 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 DE + + I++ + + K + K+ P Sbjct: 65 DEGEIVELIQKMEQLIKANKCDEVYKTLLP 94 >gi|227535540|ref|ZP_03965589.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186862|gb|EEI66929.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 62 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I +R TQ+E+A N +N EN ++ A L E + D ++ Sbjct: 3 NNIHVLRMRQQLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAERLETTVDQLFQH 62 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + +R + ++Q E + + T++ E + P + A + + + +D ++ Sbjct: 1 MENNIHVLRMRQQLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAERLETTVDQLF 60 >gi|218290222|ref|ZP_03494376.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239697|gb|EED06888.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 382 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 1/95 (1%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R+ T+ E+A A+ L E G S S AL L + + ++D E Sbjct: 35 VKPLRELAGLTKSELARRVGITPQALGLIEQGKVSPSTHVALRLAKALGTTVESLFDPEQ 94 Query: 96 IDRRYEDVTNKKRLDP-YAIGARLKSIRKDKGMSQ 129 V+ + A A ++ R G +Q Sbjct: 95 GAAHDLGVSRLRTERVALAEIAGVRVARSLDGSAQ 129 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 30/66 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K +R+ G+++ E + +G+ L EQG+ P A ++ + ++ Sbjct: 29 MKFPNAVKPLRELAGLTKSELARRVGITPQALGLIEQGKVSPSTHVALRLAKALGTTVES 88 Query: 172 IYFGDE 177 ++ ++ Sbjct: 89 LFDPEQ 94 >gi|218232808|ref|YP_002367302.1| transcriptional regulator [Bacillus cereus B4264] gi|229127969|ref|ZP_04256953.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|218160765|gb|ACK60757.1| transcriptional regulator [Bacillus cereus B4264] gi|228655531|gb|EEL11385.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] Length = 116 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 1/99 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RIK IR N Q++ + + V+ FENG S + + + +++ Sbjct: 2 EMKDRIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFNVPVNYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 GE D D KK + L ++D + Q Sbjct: 62 -YGENKDDDSSDDKYKKFKEIMEWLEPLPKDKEDMALEQ 99 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K IR D M+Q +FGK + + T+S +E G+ P + KI + +++ Sbjct: 1 MEMKDRIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFNVPVNY 60 Query: 172 IYFGD 176 +Y + Sbjct: 61 LYGEN 65 >gi|160894301|ref|ZP_02075078.1| hypothetical protein CLOL250_01854 [Clostridium sp. L2-50] gi|225375489|ref|ZP_03752710.1| hypothetical protein ROSEINA2194_01114 [Roseburia inulinivorans DSM 16841] gi|240147195|ref|ZP_04745796.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|156864002|gb|EDO57433.1| hypothetical protein CLOL250_01854 [Clostridium sp. L2-50] gi|225212686|gb|EEG95040.1| hypothetical protein ROSEINA2194_01114 [Roseburia inulinivorans DSM 16841] gi|257200627|gb|EEU98911.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|291522938|emb|CBK81231.1| Helix-turn-helix [Coprococcus catus GD/7] gi|291541431|emb|CBL14541.1| Helix-turn-helix [Ruminococcus bromii L2-63] gi|291564088|emb|CBL42904.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] gi|295091791|emb|CBK77898.1| Helix-turn-helix. [Clostridium cf. saccharolyticum K10] gi|295104152|emb|CBL01696.1| Helix-turn-helix. [Faecalibacterium prausnitzii SL3/3] Length = 273 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 4/103 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM---CSTSIRYALYLRNEYEISFDWI 90 R+KD+R +E+A +SA+ +EN + L L + Y++S D++ Sbjct: 9 ERLKDLRVERGLNLEELAQETGISKSALGSYENDNDEYKEINHGSLLKLADFYQVSVDYL 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 R + L + LKS R + + Sbjct: 69 LGLTNNRRYENTPIEELHLSD-EVVELLKSERFNNRLLCEIIS 110 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG---RTIPEIKPARKIKQVTKKH 168 ++ RLK +R ++G++ E + G+ S L +YE K+ + Sbjct: 5 ISVQERLKDLRVERGLNLEELAQETGISKSALGSYENDNDEYKEINHGSLLKLADFYQVS 64 Query: 169 LDWIY 173 +D++ Sbjct: 65 VDYLL 69 >gi|254286899|ref|ZP_04961851.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] gi|150423049|gb|EDN14998.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] Length = 181 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K++RK+ + A ++ + E G S +I + + E SF Sbjct: 6 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 65 Query: 88 DWIYDGEVI 96 + + Sbjct: 66 SAFFANDPQ 74 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK++RK +G+S +L G+ + L E+G + P I KI + Sbjct: 5 MFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 64 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 65 FSAFFANDPQLLSSE 79 >gi|153955617|ref|YP_001396382.1| hypothetical protein CKL_3003 [Clostridium kluyveri DSM 555] gi|219855996|ref|YP_002473118.1| hypothetical protein CKR_2653 [Clostridium kluyveri NBRC 12016] gi|146348475|gb|EDK35011.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219569720|dbj|BAH07704.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 182 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 33/88 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ +K +R T +E + ++ + E G + +I + +ISF I Sbjct: 7 NIGSVLKRVRFERRLTLEEASKLTEVSKAMLGQIERGESNPTISILWKISTGLKISFSEI 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 E + + + K + L Sbjct: 67 LGSETNNFEAISIDSIKPVYESDGKMIL 94 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK +R ++ ++ E KL + + L E+G + P I KI K I + Sbjct: 12 LKRVRFERRLTLEEASKLTEVSKAMLGQIERGESNPTISILWKISTGLKISFSEILGSE 70 >gi|86361163|ref|YP_473050.1| MerR family transcriptional regulator [Rhizobium etli CFN 42] gi|86285265|gb|ABC94323.1| putative transcriptional regulator protein, MerR family [Rhizobium etli CFN 42] Length = 203 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+R++ +R A+ +Q+E+A S ++L E+ + S+ + + I Sbjct: 25 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEF 84 Query: 91 YDGEVIDRRY 100 + E + Sbjct: 85 FAFEPERPKK 94 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RL+ +R +SQ E K G+PNST+S E + P + ++I L + Sbjct: 28 SRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFFAF 87 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 + K+ A+ K K Sbjct: 88 EPERPKKAFYAAQELVEIGKGAISYK 113 >gi|325271879|ref|ZP_08138337.1| putative phage repressor [Pseudomonas sp. TJI-51] gi|324102998|gb|EGC00387.1| putative phage repressor [Pseudomonas sp. TJI-51] Length = 276 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 40/107 (37%), Gaps = 4/107 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K R+ TQ E+A A +++++ E G+ S + + + + W+ Sbjct: 2 ELKDRLKHARRLKGLTQTELAERAGIAQASISEIERGLSR-SSSHLVKIAQICGVDALWL 60 Query: 91 YDGEVIDRRYEDVT---NKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 +G + + + + ++ + G E + Sbjct: 61 AEGVGSIPAPTEPGYALVGEEIQKLSAADMVRQMLAKTGSGLSEEAR 107 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK R+ KG++Q E + G+ +++S E+G + KI Q+ W Sbjct: 1 MELKDRLKHARRLKGLTQTELAERAGIAQASISEIERGLSR-SSSHLVKIAQICGVDALW 59 Query: 172 IYFG 175 + G Sbjct: 60 LAEG 63 >gi|307704993|ref|ZP_07641880.1| transcriptional regulator [Streptococcus mitis SK597] gi|307621444|gb|EFO00494.1| transcriptional regulator [Streptococcus mitis SK597] Length = 288 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + TR+K+ RK +Q+E+A G + ++ ENG + + L + ++S D+ + Sbjct: 5 LATRLKNRRKELKMSQRELAEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFF 63 Query: 92 D---GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + GE ID E + LK I Sbjct: 64 NEQIGEEIDELSEFKKLAQTFITNRNYESLKYI 96 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF--- 174 LK+ RK+ MSQ E + + +S E G P + + K +D+ + Sbjct: 9 LKNRRKELKMSQRELAEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFFNEQI 67 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKDKK 201 G+E+ K+ + ++ + K Sbjct: 68 GEEIDELSEFKKLAQTFITNRNYESLK 94 >gi|291548995|emb|CBL25257.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 273 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 4/103 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM---CSTSIRYALYLRNEYEISFDWI 90 R+KD+R +E+A +SA+ +EN + L L + Y++S D++ Sbjct: 9 ERLKDLRVERGLNLEELAQETGISKSALGSYENDNDEYKEINHGSLLKLADFYKVSVDYL 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + + L + LKS R + + Sbjct: 69 LGLTNNRKYENTPIEELHLSD-EVVELLKSERFNNRLLCEIIS 110 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG---RTIPEIKPARKIKQVTKKH 168 ++ RLK +R ++G++ E + G+ S L +YE K+ K Sbjct: 5 ISVQERLKDLRVERGLNLEELAQETGISKSALGSYENDNDEYKEINHGSLLKLADFYKVS 64 Query: 169 LDWIY 173 +D++ Sbjct: 65 VDYLL 69 >gi|228958693|ref|ZP_04120408.1| hypothetical protein bthur0005_21950 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800986|gb|EEM47888.1| hypothetical protein bthur0005_21950 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 204 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 20 MEEIQLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKVVLRNDVQVL 104 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LKSIR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFTSLINN 88 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 89 PQPDTKVVLRN 99 >gi|239820607|ref|YP_002947792.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805460|gb|ACS22526.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K +R A + + +A + S ++ E G+ S S+ L N + + Sbjct: 6 IGAQVKALRMAADVSGGALAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPASRFF 65 Query: 92 DGEVIDRRY 100 + + Sbjct: 66 GDQARRTDF 74 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IGA++K++R +S K G+ S LS E+G P ++ ++ Sbjct: 1 MSAARIGAQVKALRMAADVSGGALAKTSGISASMLSRIERGLVSPSVETLERLANGLGVP 60 Query: 169 LDWIYFGDE 177 +FGD+ Sbjct: 61 ASR-FFGDQ 68 >gi|297203878|ref|ZP_06921275.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|197713065|gb|EDY57099.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 194 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 PE +G R+ ++R + E+A + +S ++ E S + L Sbjct: 5 EPEPDPVDTRLGVRLAELRAERGWSLGELAERSGVSKSTLSRAERAEISPTASLLNRLCG 64 Query: 82 EYEISFDWIY 91 Y + + Sbjct: 65 VYGRTMSQLL 74 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L +R ++G S E + G+ STLS E+ P ++ V + + + E Sbjct: 19 LAELRAERGWSLGELAERSGVSKSTLSRAERAEISPTASLLNRLCGVYGRTMSQLLSEIE 78 Query: 178 -VIVPKSIKRAKGN 190 P + R+ G Sbjct: 79 AEAEPAPLVRSAGQ 92 >gi|167648317|ref|YP_001685980.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350747|gb|ABZ73482.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 69 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K R TQ ++A +N ENG+ S +L L S + ++ Sbjct: 10 LKAARTEAGLTQADLAELVGVTRKTINTVENGVFVPSTVLSLKLARALGTSVEALFQ 66 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 33/65 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + A+ LK+ R + G++Q + +L+G+ T++ E G +P + K+ + Sbjct: 1 MGETALLNALKAARTEAGLTQADLAELVGVTRKTINTVENGVFVPSTVLSLKLARALGTS 60 Query: 169 LDWIY 173 ++ ++ Sbjct: 61 VEALF 65 >gi|114569540|ref|YP_756220.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114340002|gb|ABI65282.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 67 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 R++ +R +Q E+ A+N E G S+ A L +E++ + Sbjct: 3 NRLRVLRAERRWSQAELGERVGVSRQAINAVETGKHDPSLTLAFALAGAFELAIE 57 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ +R ++ SQ E G+ +G+ ++ E G+ P + A + + ++ ++ Sbjct: 1 MKNRLRVLRAERRWSQAELGERVGVSRQAINAVETGKHDPSLTLAFALAGAFELAIEAVF 60 >gi|172058586|ref|YP_001815046.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991107|gb|ACB62029.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 139 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 6/95 (6%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G +I +RK + TQK +A + ++++ +E G + + L + Sbjct: 3 RALGKKIMQLRKQHQYTQKHLAERCGETVTSISAYERGQRMPNTQTLERLALALNTTVID 62 Query: 90 IYDGEV------IDRRYEDVTNKKRLDPYAIGARL 118 + D + + + + + LD + + Sbjct: 63 LIDPQYVQHPSLQEFMAQSLEPTQPLDFKLVLEDI 97 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 31/73 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G ++ +RK +Q + G +++S YE+G+ +P + ++ + + Sbjct: 4 ALGKKIMQLRKQHQYTQKHLAERCGETVTSISAYERGQRMPNTQTLERLALALNTTVIDL 63 Query: 173 YFGDEVIVPKSIK 185 V P + Sbjct: 64 IDPQYVQHPSLQE 76 >gi|322412543|gb|EFY03451.1| prophage Sa05, DNA-binding protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 109 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ +QKE+A+ +ENG A L + +E++ ++ Sbjct: 2 NRLKELRQEKKLSQKEIALELQVPPRTYQRWENGESQIKPDKAQDLADYFEVTVAYLLGY 61 Query: 94 EVIDRRYEDVT 104 Sbjct: 62 SNFKENSNLKD 72 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R++K +SQ E L +P T +E G + + A+ + + + ++ Sbjct: 1 MNRLKELRQEKKLSQKEIALELQVPPRTYQRWENGESQIKPDKAQDLADYFEVTVAYLLG 60 Query: 175 GDEVIVPKSIKR 186 ++K Sbjct: 61 YSNFKENSNLKD 72 >gi|298293906|ref|YP_003695845.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296930417|gb|ADH91226.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 135 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 24/69 (34%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K VG+R++ R +Q+++ + +E G + N + Sbjct: 9 IDKHVGSRVRMRRMMIGMSQEKLGENLGITFQQIQKYEKGTNRIGASRLQNISNVLGVPV 68 Query: 88 DWIYDGEVI 96 + ++G Sbjct: 69 SFFFEGAPN 77 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + +D + +R++ R GMSQ + G+ LG+ + YE+G + Sbjct: 1 MTKKSPNPIDKHVG-SRVRMRRMMIGMSQEKLGENLGITFQQIQKYEKGTNRIGASRLQN 59 Query: 161 IKQVTKKHLDWIYFG 175 I V + + + G Sbjct: 60 ISNVLGVPVSFFFEG 74 >gi|291543337|emb|CBL16446.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus sp. 18P13] Length = 110 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G RI++ R +Q+++A A + + E G + ++ + + + Sbjct: 1 MSDIAKIIGQRIRNYRTQKGLSQEKLAELAGCHPTYIGQLERGEKNATLESVEKIASAMD 60 Query: 85 ISFDWIYD 92 IS ++D Sbjct: 61 ISLSELFD 68 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+++ R KG+SQ + +L G + + E+G ++ KI L ++ Sbjct: 10 QRIRNYRTQKGLSQEKLAELAGCHPTYIGQLERGEKNATLESVEKIASAMDISLSELF 67 >gi|260909704|ref|ZP_05916398.1| DNA-binding protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636129|gb|EEX54125.1| DNA-binding protein [Prevotella sp. oral taxon 472 str. F0295] Length = 184 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K +G R+K +R+ N +E+A E+G S+ + Y Sbjct: 1 MEESIKSIGQRLKGLREVLNIPAEEIADLCEISLEHYLKMEDGTADPSVYRLAKISKRYG 60 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 I D + GE +T Sbjct: 61 IDLDVLLFGEEPRMSAYYLT 80 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 32/86 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ + E L + E G P + KI + LD + FG Sbjct: 10 QRLKGLREVLNIPAEEIADLCEISLEHYLKMEDGTADPSVYRLAKISKRYGIDLDVLLFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + KG+ S + D K Sbjct: 70 EEPRMSAYYLTRKGSGLSVERGNDYK 95 >gi|299821483|ref|ZP_07053371.1| DNA-binding protein [Listeria grayi DSM 20601] gi|299817148|gb|EFI84384.1| DNA-binding protein [Listeria grayi DSM 20601] Length = 180 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R + N TQ+E+ + + ++ E + S SI + S Sbjct: 2 EIGKKIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIVTLFDILEVLGSSPKAF 61 Query: 91 YDGEVIDRR-YEDVTNKKRLDPYAIGARLKSI 121 +D E ++ + G R+K + Sbjct: 62 FDEEEHTQKVIYGEGEHTFFEDEEKGYRIKWL 93 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R K ++Q E G+ + +S E+ + P I I +V Sbjct: 1 MEIGKKIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIVTLFDILEVLGSSPKA 60 Query: 172 IYFGDEVIVP 181 + +E Sbjct: 61 FFDEEEHTQK 70 >gi|229072719|ref|ZP_04205921.1| Transcription regulator, probable-related protein [Bacillus cereus F65185] gi|229193504|ref|ZP_04320451.1| Transcription regulator, probable-related protein [Bacillus cereus ATCC 10876] gi|228590036|gb|EEK47908.1| Transcription regulator, probable-related protein [Bacillus cereus ATCC 10876] gi|228710695|gb|EEL62668.1| Transcription regulator, probable-related protein [Bacillus cereus F65185] Length = 68 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K RK+ +Q E+A N +NL EN + S+ + L + + ++ Sbjct: 7 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 64 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K RK +G+SQ+E K + + T++ E + P + ++ + K L+ ++ Sbjct: 5 YLNNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 64 Query: 174 FG 175 + Sbjct: 65 WE 66 >gi|254477883|ref|ZP_05091268.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214028468|gb|EEB69304.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 203 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I++ RK T +E A AN S ++ EN S L ++ ++ Sbjct: 24 LGKMIRESRKEKGLTLEEAAKAANIGRSTLSKIENNQTRPSFEIIRRLMQTLDLQTPQLF 83 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + D A+G ++ RK+KG++ E K + STLS E +T P Sbjct: 5 SQEDGTPASEAIEAPDGDALGKMIRESRKEKGLTLEEAAKAANIGRSTLSKIENNQTRPS 64 Query: 155 IKPARKIKQVTKKHLDWIY 173 + R++ Q ++ Sbjct: 65 FEIIRRLMQTLDLQTPQLF 83 >gi|212712673|ref|ZP_03320801.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens DSM 30120] gi|212684589|gb|EEB44117.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens DSM 30120] Length = 91 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E Q ++G +KD R+ T E+A N + ++ +ENG+ + S + L N Sbjct: 3 ESEQLSNNIGRMLKDYRRRTGLTGSELAKRINVSQQQISRYENGVNNISFDKLIILFNAL 62 Query: 84 EIS 86 E+S Sbjct: 63 EMS 65 Score = 39.2 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 3/74 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH---LDWI 172 LK R+ G++ E K + + +S YE G + + +D Sbjct: 13 RMLKDYRRRTGLTGSELAKRINVSQQQISRYENGVNNISFDKLIILFNALEMSSRDIDVF 72 Query: 173 YFGDEVIVPKSIKR 186 + + + S+ + Sbjct: 73 FEKMKYLFDSSVYK 86 >gi|191638861|ref|YP_001988027.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190713163|emb|CAQ67169.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327382909|gb|AEA54385.1| hypothetical protein LC2W_2053 [Lactobacillus casei LC2W] gi|327386093|gb|AEA57567.1| hypothetical protein LCBD_2071 [Lactobacillus casei BD-II] Length = 344 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I++ R A TQ+E+A AV+++E G+ I L + + Sbjct: 7 IRERRLALGLTQEELANKIGVSAPAVSIWEKGVSYPDITLLPALARILGTDVNTLLT 63 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ R G++Q E +G+ +S +E+G + P+I + ++ ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSIWEKGVSYPDITLLPALARILGTDVNT 60 Query: 172 IYFGDEVIVPKSIK 185 + + P+ + Sbjct: 61 LLTFSVTMDPEESR 74 >gi|116251937|ref|YP_767775.1| helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256585|emb|CAK07672.1| putative helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 108 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 3/98 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWI 90 G RIK++R T ++A +S + EN S + E++ D++ Sbjct: 6 FGKRIKELRTKKGMTLDDLAGATGSSKSYIWELENKNPPRPSAEKLSEIAAVLEVTTDYL 65 Query: 91 YDGEVIDRRYEDVTNKKRLDPY--AIGARLKSIRKDKG 126 E ED + A +++++ + G Sbjct: 66 IGRETTLETAEDKAFFREYSNMPQATREKIRAMARLLG 103 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 4/96 (4%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKK 167 + G R+K +R KGM+ + G S + E P + +I V + Sbjct: 1 MATAIFGKRIKELRTKKGMTLDDLAGATGSSKSYIWELENKNPPRPSAEKLSEIAAVLEV 60 Query: 168 HLDWIYFGD---EVIVPKSIKRAKGNQSSKKSKKDK 200 D++ + E K+ R N +K + Sbjct: 61 TTDYLIGRETTLETAEDKAFFREYSNMPQATREKIR 96 >gi|32266247|ref|NP_860279.1| hypothetical protein HH0748 [Helicobacter hepaticus ATCC 51449] gi|32262297|gb|AAP77345.1| hypothetical protein HH_0748 [Helicobacter hepaticus ATCC 51449] Length = 228 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+++ +R + TQK+ A + +E G S Y + + + + + Sbjct: 2 IGSKLVALRNEHQMTQKDFAERTGISYGTLQAYEYGTQSPRYDYLTKVSDIFNVPMIFFL 61 Query: 92 DGEV 95 D + Sbjct: 62 DDDT 65 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG++L ++R + M+Q +F + G+ TL YE G P K+ + + Sbjct: 1 MIGSKLVALRNEHQMTQKDFAERTGISYGTLQAYEYGTQSPRYDYLTKVSDIFNVPM-IF 59 Query: 173 YFGDEVIVPKSIKRAKGNQSSK---KSKKDKKSSNP 205 + D+ + S KG S + S+NP Sbjct: 60 FLDDDTSLGNSYTNPKGFVSDSLDVRKSDSLVSNNP 95 >gi|89101060|ref|ZP_01173900.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89084233|gb|EAR63394.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 71 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L +RK G SQ LG+ T+ + E+G+ P + A +I + ++ I+ Sbjct: 1 MKNNLAELRKKHGFSQDRLAVRLGVSRQTIISIEKGKYSPSLPLAFQIAKTFDTTIEHIF 60 Query: 174 FGDEVIVPK 182 +E K Sbjct: 61 IYEEETNKK 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 28/69 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + ++RK + +Q +A+ + E G S S+ A + ++ + + I+ Sbjct: 3 NNLAELRKKHGFSQDRLAVRLGVSRQTIISIEKGKYSPSLPLAFQIAKTFDTTIEHIFIY 62 Query: 94 EVIDRRYED 102 E + + Sbjct: 63 EEETNKKGE 71 >gi|312138107|ref|YP_004005443.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887446|emb|CBH46758.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 182 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 5/98 (5%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R+ T + +A +S ++ E G+ + SI AL + + ++ Sbjct: 5 LRSHRRRAGLTLEALAEDTGLTKSYLSKVERGINTPSIAVALKIARALDADVSQLFSDTP 64 Query: 96 IDRRYEDVTNKKRL-----DPYAIGARLKSIRKDKGMS 128 + + +R D A+ + + K M Sbjct: 65 DNSVMAIERHAERAQVDADDDSAVYDAIATRMIGKAMQ 102 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + A L+S R+ G++ + G+ S LS E+G P I A KI + + ++ Sbjct: 1 MAALLRSHRRRAGLTLEALAEDTGLTKSYLSKVERGINTPSIAVALKIARALDADVSQLF 60 Query: 174 FGDEVIVPKSIKR 186 +I+R Sbjct: 61 SDTPDNSVMAIER 73 >gi|331677084|ref|ZP_08377780.1| putative transcriptional regulator [Escherichia coli H591] gi|331075773|gb|EGI47071.1| putative transcriptional regulator [Escherichia coli H591] Length = 89 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ +IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 93 GEVIDRRYEDVTNKKRLDPY 112 + V N+ L Sbjct: 69 EPEKPDEPQVVINQDDLIEM 88 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ +G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSE 65 Query: 172 IYFGDEVIVPKSI 184 + E + Sbjct: 66 FFSEPEKPDEPQV 78 >gi|260583710|ref|ZP_05851458.1| transcriptional regulator [Granulicatella elegans ATCC 700633] gi|260158336|gb|EEW93404.1| transcriptional regulator [Granulicatella elegans ATCC 700633] Length = 285 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R N TQKE++ G +S ++ EN S L +S D+ + Sbjct: 2 LGERLKHRRLELNLTQKELSEGI-CKQSQISRIENQNYDPSALILKKLSVRLNVSMDYFF 60 Query: 92 DGEVIDRRYEDVTNKKRLD 110 + ++ + + KK D Sbjct: 61 NTKLEETDSVLKSFKKIAD 79 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 1/87 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G RLK R + ++Q E + + S +S E P +K+ +D+ Sbjct: 1 MLGERLKHRRLELNLTQKELSEGI-CKQSQISRIENQNYDPSALILKKLSVRLNVSMDYF 59 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +K K S++D Sbjct: 60 FNTKLEETDSVLKSFKKIADDALSQRD 86 >gi|296123145|ref|YP_003630923.1| cupin [Planctomyces limnophilus DSM 3776] gi|296015485|gb|ADG68724.1| Cupin 2 conserved barrel domain protein [Planctomyces limnophilus DSM 3776] Length = 189 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 8/97 (8%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + R+K+ R D+ ++ + G+ S S E R P ++ +I Sbjct: 1 MNLVELAQRIKNHRIDQRLTLDQVASRTGLTRSWWSKVENFRITPSLQSLGQIAAALGVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + + G + R +KS++ NP Sbjct: 61 VSDLVEG--------LDRKPQMAVIRKSERKVVERNP 89 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RIK+ R T ++A S + EN + S++ + +S + Sbjct: 5 ELAQRIKNHRIDQRLTLDQVASRTGLTRSWWSKVENFRITPSLQSLGQIAAALGVSVSDL 64 Query: 91 YDG 93 +G Sbjct: 65 VEG 67 >gi|254420808|ref|ZP_05034532.1| hypothetical protein BBAL3_3118 [Brevundimonas sp. BAL3] gi|196186985|gb|EDX81961.1| hypothetical protein BBAL3_3118 [Brevundimonas sp. BAL3] Length = 65 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+K +R TQ+++ AV E S+ A + ++ + I++ Sbjct: 3 NRLKLLRVERGWTQEQLGQALGVSRQAVIALETERHDPSLDLAYRIAAAFDRPVEEIFE 61 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++G +Q + G+ LG+ + E R P + A +I + ++ I+ Sbjct: 1 MKNRLKLLRVERGWTQEQLGQALGVSRQAVIALETERHDPSLDLAYRIAAAFDRPVEEIF 60 >gi|332687092|ref|YP_004456866.1| Cro/CI family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332371101|dbj|BAK22057.1| transcriptional regulator, Cro/CI family [Melissococcus plutonius ATCC 35311] Length = 89 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A + + R K M+Q E +G+ T+ E+ + P + A I V ++ I Sbjct: 8 AFDSSIHVYRAMKRMTQQELANRVGVSRQTIIQLERNKYNPSLLLAHDIADVFGVTIEDI 67 Query: 173 YFGDEVIVPKSIKRAKGNQSS 193 + ++ ++ + Sbjct: 68 FTFKKLTDNENSTEQMNDSKE 88 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 24/73 (32%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I R TQ+E+A + E + S+ A + + + ++ + I+ + Sbjct: 13 IHVYRAMKRMTQQELANRVGVSRQTIIQLERNKYNPSLLLAHDIADVFGVTIEDIFTFKK 72 Query: 96 IDRRYEDVTNKKR 108 + Sbjct: 73 LTDNENSTEQMND 85 >gi|241889565|ref|ZP_04776863.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863187|gb|EER67571.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 181 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R N TQ+E+ + + ++ E + S S+ + + + Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 Query: 92 DGEVIDRRYEDVTNKK 107 D E ++ + Sbjct: 64 DKESTSQKVYYSLEDQ 79 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y+IG RLK +R K ++Q E G+ + +S E+ P ++ I QV Sbjct: 1 MYSIGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPK 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +F E K + S +++ + K Sbjct: 61 D-FFDKESTSQKVYYSLEDQTSYEETDEGYK 90 >gi|240136847|ref|YP_002961314.1| Transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240006811|gb|ACS38037.1| Transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 97 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 25/69 (36%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R A +Q+ +A+ A ++ E G+ + ++ L + D + Sbjct: 10 NLRLLRGARGLSQETLAVDAGVAAPYLSGIERGVRNPTVDVLDRLAGALGVEIDALLRAP 69 Query: 95 VIDRRYEDV 103 D Sbjct: 70 DADDTPPMP 78 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R +G+SQ G+ LS E+G P + ++ +D + Sbjct: 9 WNLRLLRGARGLSQETLAVDAGVAAPYLSGIERGVRNPTVDVLDRLAGALGVEIDALL 66 >gi|220923328|ref|YP_002498630.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947935|gb|ACL58327.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 183 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL--------RNEY 83 VG R++ +R + +Q+ +A A + S ++L E+G + S+ + + Sbjct: 6 VGARLRYVRLRHGLSQRALAKKAGVVNSTISLIESGKANPSVGALKRILDAVPIGLAEFF 65 Query: 84 EISFD 88 ++ D Sbjct: 66 SLTPD 70 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI------- 161 + +GARL+ +R G+SQ K G+ NST+S E G+ P + ++I Sbjct: 1 MTNDGVGARLRYVRLRHGLSQRALAKKAGVVNSTISLIESGKANPSVGALKRILDAVPIG 60 Query: 162 -KQVTKKHLD 170 + D Sbjct: 61 LAEFFSLTPD 70 >gi|163754491|ref|ZP_02161613.1| transcriptional regulator [Kordia algicida OT-1] gi|161325432|gb|EDP96759.1| transcriptional regulator [Kordia algicida OT-1] Length = 73 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + Q +G R+K +R+ Q+++A N +S ++ E G + ++ + + Sbjct: 3 DKEQLQLAIGKRVKMLREEKGMAQQDLAAKCNIEKSNLSRLEAGGTNPTLYTLKRIADNL 62 Query: 84 EISFDWIY 91 EI + + Sbjct: 63 EIKLEELV 70 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + K AIG R+K +R++KGM+Q + + S LS E G T P + ++I Sbjct: 2 DDKEQLQLAIGKRVKMLREEKGMAQQDLAAKCNIEKSNLSRLEAGGTNPTLYTLKRIADN 61 Query: 165 TKKHLDWIY 173 + L+ + Sbjct: 62 LEIKLEELV 70 >gi|52079411|ref|YP_078202.1| hypothetical protein BL02899 [Bacillus licheniformis ATCC 14580] gi|52784771|ref|YP_090600.1| hypothetical protein BLi00999 [Bacillus licheniformis ATCC 14580] gi|319646808|ref|ZP_08001037.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] gi|52002622|gb|AAU22564.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52347273|gb|AAU39907.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317391396|gb|EFV72194.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 65 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R + TQ ++A N + L E + +++ + + + + D ++ Sbjct: 3 NRVKLARIEKSLTQAQLAERVNVTRQTIGLIEKNKYNPTLQLCIAIAKALDKTLDDLFWE 62 Query: 94 EV 95 E Sbjct: 63 EK 64 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R +K ++Q + + + + T+ E+ + P ++ I + K LD ++ Sbjct: 1 MVNRVKLARIEKSLTQAQLAERVNVTRQTIGLIEKNKYNPTLQLCIAIAKALDKTLDDLF 60 Query: 174 FGDE 177 + ++ Sbjct: 61 WEEK 64 >gi|23502925|ref|NP_699052.1| hypothetical protein BR2077 [Brucella suis 1330] gi|161619991|ref|YP_001593878.1| XRE family transcriptional regulator [Brucella canis ATCC 23365] gi|254705080|ref|ZP_05166908.1| XRE family transcriptional regulator [Brucella suis bv. 3 str. 686] gi|254718120|ref|ZP_05179931.1| XRE family transcriptional regulator [Brucella sp. 83/13] gi|256060042|ref|ZP_05450224.1| XRE family transcriptional regulator [Brucella neotomae 5K33] gi|256370475|ref|YP_003107986.1| hypothetical protein BMI_I2099 [Brucella microti CCM 4915] gi|260567452|ref|ZP_05837922.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261324018|ref|ZP_05963215.1| transcriptional regulator [Brucella neotomae 5K33] gi|261755782|ref|ZP_05999491.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265983072|ref|ZP_06095807.1| transcriptional regulator [Brucella sp. 83/13] gi|294851306|ref|ZP_06791979.1| hypothetical protein BAZG_00206 [Brucella sp. NVSL 07-0026] gi|306839747|ref|ZP_07472549.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306842807|ref|ZP_07475447.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|306843496|ref|ZP_07476097.1| XRE family transcriptional regulator [Brucella sp. BO1] gi|23348958|gb|AAN30967.1| conserved hypothetical protein [Brucella suis 1330] gi|161336802|gb|ABX63107.1| transcriptional regulator, XRE family [Brucella canis ATCC 23365] gi|256000638|gb|ACU49037.1| hypothetical protein BMI_I2099 [Brucella microti CCM 4915] gi|260156970|gb|EEW92050.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261299998|gb|EEY03495.1| transcriptional regulator [Brucella neotomae 5K33] gi|261745535|gb|EEY33461.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|264661664|gb|EEZ31925.1| transcriptional regulator [Brucella sp. 83/13] gi|294819895|gb|EFG36894.1| hypothetical protein BAZG_00206 [Brucella sp. NVSL 07-0026] gi|306276187|gb|EFM57887.1| XRE family transcriptional regulator [Brucella sp. BO1] gi|306287001|gb|EFM58512.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|306405207|gb|EFM61484.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 126 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G R++++R+ TQKEMA + ++ E+G + + + I +D Sbjct: 4 FGKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE 62 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHL 169 G RL+ +R+++G++Q E + L + + LS E GR P ++I Sbjct: 1 MTPFGKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIW 60 Query: 170 DW 171 D Sbjct: 61 DE 62 >gi|126172576|ref|YP_001048725.1| XRE family transcriptional regulator [Shewanella baltica OS155] gi|125995781|gb|ABN59856.1| transcriptional regulator, XRE family [Shewanella baltica OS155] Length = 191 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 21/63 (33%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R + + A ++ + E G S +I + + + S + Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNFSLSTFLEPTP 71 Query: 96 IDR 98 + Sbjct: 72 QSQ 74 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK++R KG S + + G+ + + E+G + P I KI L Sbjct: 12 LKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNFSLSTFL 67 >gi|327393597|dbj|BAK11019.1| putative HTH-type transcriptional regulatory protein [Pantoea ananatis AJ13355] Length = 192 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 29/71 (40%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ + +G ++K R+ + + ++A + + ++ E G S + L Sbjct: 5 LSSKEDDLNVRIGLKVKFERERRSWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLS 64 Query: 81 NEYEISFDWIY 91 +++S + Sbjct: 65 GAFDMSMSQLL 75 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 24/68 (35%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R+ + S + + G+ + + E+G + P ++ + + E Sbjct: 20 VKFERERRSWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLSGAFDMSMSQLLAETE 79 Query: 178 VIVPKSIK 185 ++ Sbjct: 80 ARTGMLVR 87 >gi|327192173|gb|EGE59146.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 469 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ IR A TQ MA S +NL E +++ L L Y + + + Sbjct: 9 GPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + L + S L+ E+ + ++ K+ V + L+ + Sbjct: 12 VRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 >gi|320178346|gb|EFW53317.1| repressor protein c2, putative [Shigella boydii ATCC 9905] Length = 218 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISF 87 K +G R+ + R+ TQ +A A A++ E G S + + + S Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 Query: 88 DWIYDGEVIDRRYEDVTN 105 W+ +G+ + +E+ Sbjct: 61 QWLQNGDEKGKHWENNVK 78 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHL 169 ++G RL + R+ G++Q K G+ +S EQG T K+ + Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 Query: 170 DWIYFGDE 177 W+ GDE Sbjct: 61 QWLQNGDE 68 >gi|310779002|ref|YP_003967335.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309748325|gb|ADO82987.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 179 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R+ TQ+E+A + ++ E + S SI + + + + Sbjct: 3 IGEKIKRLRQGKLLTQEELADRCELSKGFISQLERDLTSPSIATLVDILESLGTNLKEFF 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E ++ + + + R+ Sbjct: 63 NEEEDEKIVFSNDDFFEFEDNDLKYRI 89 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K +R+ K ++Q E + +S E+ T P I I + +L Sbjct: 1 MIIGEKIKRLRQGKLLTQEELADRCELSKGFISQLERDLTSPSIATLVDILESLGTNLKE 60 Query: 172 IYFGDEV 178 + +E Sbjct: 61 FFNEEED 67 >gi|302539648|ref|ZP_07291990.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302457266|gb|EFL20359.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 189 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ R+ T ++A + + +N E G S + L +++S + Sbjct: 5 IAARVRTERERRKWTLAQLADASGVSRAMINRIERGESSPTAVVLGKLSAAFQLSVATLL 64 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 AR+++ R+ + + + G+ + ++ E+G + P K+ + + + Sbjct: 7 ARVRTERERRKWTLAQLADASGVSRAMINRIERGESSPTAVVLGKLSAAFQLSVATLL 64 >gi|289550030|ref|YP_003470934.1| hypothetical protein SLGD_00659 [Staphylococcus lugdunensis HKU09-01] gi|315659342|ref|ZP_07912206.1| TM2 domain protein [Staphylococcus lugdunensis M23590] gi|289179562|gb|ADC86807.1| hypothetical protein SLGD_00659 [Staphylococcus lugdunensis HKU09-01] gi|315495767|gb|EFU84098.1| TM2 domain protein [Staphylococcus lugdunensis M23590] Length = 116 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 35/61 (57%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 MSQ + + L + ++SN+E+ +P+I ++ ++ L+++ G+E+IV K + Sbjct: 1 MSQEKLAEYLNVSRHSISNWEREVNLPDIHSLVEMTKLFNVSLNFLVKGEEMIVNKYVYA 60 Query: 187 A 187 A Sbjct: 61 A 61 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 2/82 (2%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 +Q+++A N +++ +E + I + + + +S +++ GE + Sbjct: 1 MSQEKLAEYLNVSRHSISNWEREVNLPDIHSLVEMTKLFNVSLNFLVKGEEMIVNKYVYA 60 Query: 105 NKKRLDPYAIGARLKSIRKDKG 126 + RK G Sbjct: 61 ALAFFLGSFGAH--RFYRKQNG 80 >gi|262199036|ref|YP_003270245.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082383|gb|ACY18352.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 133 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ + +G ++ RKA TQ++ A E G S+ + + Sbjct: 3 KELAESIGAASREARKALELTQEDAAERIGVSAEFYARIERGNALPSVPTFTRIAMALGV 62 Query: 86 SFDWIY 91 S D + Sbjct: 63 SADTLL 68 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 23/65 (35%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 + RK ++Q + + +G+ + E+G +P + +I D + + Sbjct: 14 REARKALELTQEDAAERIGVSAEFYARIERGNALPSVPTFTRIAMALGVSADTLLGFRDD 73 Query: 179 IVPKS 183 Sbjct: 74 SEASD 78 >gi|257439516|ref|ZP_05615271.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198043|gb|EEU96327.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 270 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE-NGMCSTSIRYALYLRNEYEISFDWI 90 + R+ ++RK +E+A +SA+ +E N + + L + YE+S D++ Sbjct: 7 IQERLWELRKDKGLNLEELAQQTGISKSALASYEANDNKEINHGNLITLADFYEVSLDYL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + + L+ + A LKS R + + Sbjct: 67 FCRTENREQINTPLMELHLND-EMVALLKSGRINNRLLCE 105 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYE-QGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +RKDKG++ E + G+ S L++YE + + LD+++ E Sbjct: 13 ELRKDKGLNLEELAQQTGISKSALASYEANDNKEINHGNLITLADFYEVSLDYLFCRTE 71 >gi|269928987|ref|YP_003321308.1| transcriptional regulator of molybdate metabolism, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269788344|gb|ACZ40486.1| transcriptional regulator of molybdate metabolism, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 378 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + V +++++ R A +Q+ +A A AV+ E G + AL L + Sbjct: 8 ERVESQVRERRIAAGLSQQALAERAGLTRQAVSAIEAGRYLPNTAVALRLARALGCPVEE 67 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 ++ + R D A R++ R + G Sbjct: 68 LFRLPDVPPRVRADLVG---DVSAGDRRVQVARVGGRLLARPLAGASG 112 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++++ R G+SQ + G+ +S E GR +P A ++ + ++ ++ Sbjct: 11 ESQVRERRIAAGLSQQALAERAGLTRQAVSAIEAGRYLPNTAVALRLARALGCPVEELF 69 >gi|218515801|ref|ZP_03512641.1| probable transcriptional regulator protein [Rhizobium etli 8C-3] Length = 469 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ IR A TQ MA S +NL E +++ L L Y + + + Sbjct: 9 GPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + L + S L+ E+ + ++ K+ V + L+ + Sbjct: 12 VRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 >gi|212640211|ref|YP_002316731.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561691|gb|ACJ34746.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 121 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 1/102 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R+ N +Q+E+A+ + + +E+G L L ++ + Sbjct: 4 IGENIRMHREQRNMSQQELAMKVRVGVATIQKYESGEQVPDTPTILKLCTALDVPASELL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK-SIRKDKGMSQIEF 132 + + + L R K +RK K S+ +F Sbjct: 64 ERADVSNSSSLDPEIEYLIKEIGIKRAKLILRKAKEFSEEDF 105 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++ R+ + MSQ E + + +T+ YE G +P+ K+ Sbjct: 1 MSTIGENIRMHREQRNMSQQELAMKVRVGVATIQKYESGEQVPDTPTILKLCTALDVPAS 60 Query: 171 WIYFGDEVIVPKSIK 185 + +V S+ Sbjct: 61 ELLERADVSNSSSLD 75 >gi|206561422|ref|YP_002232187.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037464|emb|CAR53400.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 75 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 28 YWKDVGTRIKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + G R++ +RK + +Q+ A S E G + S+ + + Sbjct: 7 LRQRFGARVRQLRKEKTDLSQEAFADKVGFARSYFGRVETGKANPSLDAIQTIAEGLGVE 66 Query: 87 FDWIYDGEV 95 +++ + Sbjct: 67 VSALFEDDD 75 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 114 IGARLKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GAR++ +RK+K +SQ F +G S E G+ P + + I + + + Sbjct: 11 FGARVRQLRKEKTDLSQEAFADKVGFARSYFGRVETGKANPSLDAIQTIAEGLGVEVSAL 70 Query: 173 YFGDE 177 + D+ Sbjct: 71 FEDDD 75 >gi|190890421|ref|YP_001976963.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190695700|gb|ACE89785.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 469 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ IR A TQ MA S +NL E +++ L L Y + + + Sbjct: 9 GPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + L + S L+ E+ + ++ K+ V + L+ + Sbjct: 12 VRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEEL 66 >gi|163868999|ref|YP_001610229.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018676|emb|CAK02234.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD--- 88 +G RI+ R + +QK + + +E G+ S L + + ++ Sbjct: 20 IGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQKLQVPISFFY 79 Query: 89 -WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + ++ + N + + A LK+ R+ + Q Sbjct: 80 ADLLTTDIATKENLSHCN-QDIYSEKEHALLKNFRELQPKKQKAI 123 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + N +D +IGAR++ R G+SQ G LG+ + YE+G Sbjct: 2 PTKNPHFQTKNSNFVDT-SIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVS 60 Query: 155 IKPARKIKQVTKKHLDWIY 173 +I Q + + + Y Sbjct: 61 AGCLLEIAQKLQVPISFFY 79 >gi|154499629|ref|ZP_02037667.1| hypothetical protein BACCAP_03286 [Bacteroides capillosus ATCC 29799] gi|150271651|gb|EDM98899.1| hypothetical protein BACCAP_03286 [Bacteroides capillosus ATCC 29799] gi|295103647|emb|CBL01191.1| DNA ligase N terminus./Helix-turn-helix. [Faecalibacterium prausnitzii SL3/3] Length = 268 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R +E+A +SA+ +E + + L + Y +S D++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + L + A LKS R + + Sbjct: 67 FCRTENRAEINTPLRELHLSD-EMVALLKSGRINNRLLCE 105 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 I RLK +R +KG+ E + G+ S L +YE+ + LD++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 66 Query: 173 YFGDEVIVP 181 + E Sbjct: 67 FCRTENRAE 75 >gi|158522991|ref|YP_001530861.1| helix-turn-helix domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511817|gb|ABW68784.1| helix-turn-helix domain protein [Desulfococcus oleovorans Hxd3] Length = 387 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 26/75 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +R+ T +A E + E G + S L +S D ++ Sbjct: 11 IGRNIRKLRRQRGWTISRLAGEIGMAEIPLGRIERGGNAPSAAVIFQLSRALGVSVDTLF 70 Query: 92 DGEVIDRRYEDVTNK 106 + D E V Sbjct: 71 AEDESDLLAERVKTP 85 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +K D IG ++ +R+ +G + +GM L E+G P ++ + Sbjct: 3 QKTTDLTFIGRNIRKLRRQRGWTISRLAGEIGMAEIPLGRIERGGNAPSAAVIFQLSRAL 62 Query: 166 KKHLDWIYFGDEV 178 +D ++ DE Sbjct: 63 GVSVDTLFAEDES 75 >gi|163940990|ref|YP_001645874.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863187|gb|ABY44246.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 66 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK+ R + TQ+++A ++ E G + S++ A + + D ++ E Sbjct: 6 KIKEYRAKVHMTQEDLAKKVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 95 V 95 Sbjct: 66 D 66 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+S+ E+G+ P ++ A I + +D Sbjct: 1 MAFVTKIKEYRAKVHMTQEDLAKKVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60 Query: 172 IYFGDE 177 ++ ++ Sbjct: 61 VFIFED 66 >gi|89074743|ref|ZP_01161201.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89049507|gb|EAR55068.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 130 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + E N + I +++ R+ KG++Q+ K LG+ T + E G+T P Sbjct: 4 MSEHSVEREINNAMTEIAHIAQKIREAREWKGITQVSMAKQLGVARQTYLDLESGKTEPR 63 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 + I ++T + L W D I R Sbjct: 64 VLMLMNIAKITGRSLHWFISDDNTPEYGDINR 95 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 2/98 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +I++ R+ TQ MA E+G + + + S W Sbjct: 23 IAQKIREAREWKGITQVSMAKQLGVARQTYLDLESGKTEPRVLMLMNIAKITGRSLHWFI 82 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 + + + + L+ ++ ++ Sbjct: 83 SDDNTPEYGDINRLSVM--YAQVPSPLRQKMIEQNINL 118 >gi|325291275|ref|YP_004267456.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324966676|gb|ADY57455.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 66 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 25/63 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K R + Q+++A + + E+G + ++ + + + D ++ Sbjct: 4 KRMKIARMECDMKQEDLAKAVGVTRQTIGMIESGNYNPTLNLCIAICKALGKTLDGLFWE 63 Query: 94 EVI 96 E Sbjct: 64 ESQ 66 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+K R + M Q + K +G+ T+ E G P + I + K LD + Sbjct: 1 MKNKRMKIARMECDMKQEDLAKAVGVTRQTIGMIESGNYNPTLNLCIAICKALGKTLDGL 60 Query: 173 YFGD 176 ++ + Sbjct: 61 FWEE 64 >gi|295101831|emb|CBK99376.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 312 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 +G R+KD+R N + +A +SA++ +E+ + SI L Y ++ D++ Sbjct: 48 LGERLKDLRVERNLKLETLAEKTGLSKSALSKYESDDVTDLSIYAVTTLAEFYGVTTDYL 107 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 +R + V + L A+ L++ R + + Sbjct: 108 LGVTENKKRPDAVLSDLHLSDGAV-DVLRNGRFNHRLLCE 146 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R ++ + + G+ S LS YE T I + + D++ Sbjct: 50 ERLKDLRVERNLKLETLAEKTGLSKSALSKYESDDVTDLSIYAVTTLAEFYGVTTDYLLG 109 Query: 175 GDE 177 E Sbjct: 110 VTE 112 >gi|295702409|ref|YP_003595484.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294800068|gb|ADF37134.1| transcriptional regulator [Bacillus megaterium DSM 319] Length = 180 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 27/65 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R TQ+E+ + + ++ E + S S+ + Sbjct: 2 EIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKEF 61 Query: 91 YDGEV 95 ++ + Sbjct: 62 FEIDT 66 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R KG++Q E G+ + +S E+ + P ++ I +V Sbjct: 1 MEIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + D + + + K Sbjct: 61 FFEIDTHVQKVVYREEDYTSYCEDEK 86 >gi|294789385|ref|ZP_06754623.1| putative toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] gi|294482810|gb|EFG30499.1| putative toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] Length = 199 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 7/121 (5%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E ++ +G I+ R+ N +E++ +S ++ ENG + L + Sbjct: 9 EELKFAMILGKNIRKAREEMNMNLQEVSTHLRYPKSKLSEIENGKKIPNAVLMGQLSELF 68 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA-------RLKSIRKDKGMSQIEFGKLL 136 E+S + Y G D E + R+ ++K +Q +L+ Sbjct: 69 EVSVSYFYTGNETDVGIEKYFDVARMFHSFKTELNAHVALKIKQFCIHAFPNQSASEELI 128 Query: 137 G 137 Sbjct: 129 H 129 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G ++ R++ M+ E L P S LS E G+ IP ++ ++ + + + Sbjct: 15 MILGKNIRKAREEMNMNLQEVSTHLRYPKSKLSEIENGKKIPNAVLMGQLSELFEVSVSY 74 Query: 172 IYFGDE--VIVPKSIKRAKGNQSSK 194 Y G+E V + K A+ S K Sbjct: 75 FYTGNETDVGIEKYFDVARMFHSFK 99 >gi|293399779|ref|ZP_06643925.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306179|gb|EFE47422.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 65 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK R A + TQKE+A +N E G ++SIR + + + + + ++ E Sbjct: 6 RIKAARAAKDMTQKELAECVGVTRQTMNAIEKGDYNSSIRLCIAICKALDKTLNDLFWEE 65 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A R+K+ R K M+Q E + +G+ T++ E+G I+ I + K L+ Sbjct: 1 MAKNLRIKAARAAKDMTQKELAECVGVTRQTMNAIEKGDYNSSIRLCIAICKALDKTLND 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 LFWEE 65 >gi|228921132|ref|ZP_04084463.1| hypothetical protein bthur0011_21390 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838525|gb|EEM83835.1| hypothetical protein bthur0011_21390 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 211 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S +I + N + Sbjct: 27 MEEIQLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTITTIWKIANGLK 86 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 87 VSFTSLINNPKPDTKVVLRNDVQVL 111 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LKSIR+ + +S + +L G+ + + E+G + P I KI K + Sbjct: 36 KNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTITTIWKIANGLKVSFTSLI 93 >gi|229196651|ref|ZP_04323395.1| hypothetical protein bcere0001_22090 [Bacillus cereus m1293] gi|228587007|gb|EEK45081.1| hypothetical protein bcere0001_22090 [Bacillus cereus m1293] Length = 185 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 35/85 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + +++A ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + ++ + L Sbjct: 61 VSFTSLINNPQPDTKVVLRSDVQAL 85 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRS 80 >gi|261409020|ref|YP_003245261.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285483|gb|ACX67454.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 121 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 26/80 (32%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + + RI+ + ++ T+K ++ G + S + + + +S D Sbjct: 1 MQSIYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTTPSTNKLIEIAAFFSVSLD 60 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 W+ G + Sbjct: 61 WLIIGRGSPTSRVKEARGEY 80 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +I R++ + + +GM++ F + LG+ ++++G+T P +I LD Sbjct: 1 MQSIYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTTPSTNKLIEIAAFFSVSLD 60 Query: 171 WIYFGDEVIVPKSIKRAKGN 190 W+ G +K A+G Sbjct: 61 WLIIGRGSPT-SRVKEARGE 79 >gi|167767673|ref|ZP_02439726.1| hypothetical protein CLOSS21_02206 [Clostridium sp. SS2/1] gi|317499148|ref|ZP_07957425.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710690|gb|EDS21269.1| hypothetical protein CLOSS21_02206 [Clostridium sp. SS2/1] gi|291560806|emb|CBL39606.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|316893561|gb|EFV15766.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 120 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 38/80 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K +G +IK+ RK N TQ+++A A+ S ++ E S S+ + + ++ D Sbjct: 6 YKALGAKIKEYRKKENITQEQLAEMADISLSHMSNVETASVSVSLPALKLIADALGVTID 65 Query: 89 WIYDGEVIDRRYEDVTNKKR 108 + ++ + +KK Sbjct: 66 ELLVDSYSKKQKKYFYSKKM 85 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K ++ A+GA++K RK + ++Q + ++ + S +SN E + + I Sbjct: 1 MKPINYKALGAKIKEYRKKENITQEQLAEMADISLSHMSNVETASVSVSLPALKLIADAL 60 Query: 166 KKHLDWIY 173 +D + Sbjct: 61 GVTIDELL 68 >gi|126698714|ref|YP_001087611.1| putative transcriptional regulator [Clostridium difficile 630] gi|255100133|ref|ZP_05329110.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306023|ref|ZP_05350195.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|115250151|emb|CAJ67972.1| Transcriptional regulator, RmlC-type [Clostridium difficile] Length = 183 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 34/94 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +VG ++ +R+ + + + ++ + E G S ++ + + ++ Sbjct: 1 MDNKFPNVGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 I+F + + + + +L Sbjct: 61 INFTTLLNENTNTYEVIKKEEVEPIVEQKGNMKL 94 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R++ G+S + K+ G+ + L E+G + P + KI K + + Sbjct: 10 ENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLLNE 69 Query: 176 D----EVIVPKSIK---RAKGNQS 192 + EVI + ++ KGN Sbjct: 70 NTNTYEVIKKEEVEPIVEQKGNMK 93 >gi|42780878|ref|NP_978125.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42736799|gb|AAS40733.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 403 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 92 DGEV 95 + + Sbjct: 63 EEDE 66 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLLEE 64 Query: 176 DEVIVPKSIKRAK 188 DE V + I++ + Sbjct: 65 DEGEVVELIQKME 77 >gi|306813594|ref|ZP_07447777.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|305853041|gb|EFM53485.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] Length = 178 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|284921317|emb|CBG34385.1| putative transcriptional regulator [Escherichia coli 042] Length = 178 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|255531474|ref|YP_003091846.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344458|gb|ACU03784.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 109 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +R+ N +Q E+A N A + E G+ +I + N +E+S I Sbjct: 4 IGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLAQIANLFEVSTMDII 63 Query: 92 DGEVIDRRYEDVTNKKRL 109 E + + + L Sbjct: 64 SKEGENPQSLNFEEINGL 81 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 32/91 (35%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++ +R+ G SQ E K L + S E G T I +I + + Sbjct: 1 MNIIGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLAQIANLFEVSTM 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 I + K ++++++ Sbjct: 61 DIISKEGENPQSLNFEEINGLKEKLAQREEE 91 >gi|218553960|ref|YP_002386873.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|256018347|ref|ZP_05432212.1| putative DNA-binding transcriptional regulator [Shigella sp. D9] gi|300901847|ref|ZP_07119882.1| helix-turn-helix protein [Escherichia coli MS 84-1] gi|301306843|ref|ZP_07212892.1| helix-turn-helix protein [Escherichia coli MS 124-1] gi|332279399|ref|ZP_08391812.1| conserved hypothetical protein [Shigella sp. D9] gi|218360728|emb|CAQ98289.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|300406059|gb|EFJ89597.1| helix-turn-helix protein [Escherichia coli MS 84-1] gi|300837928|gb|EFK65688.1| helix-turn-helix protein [Escherichia coli MS 124-1] gi|315253499|gb|EFU33467.1| helix-turn-helix protein [Escherichia coli MS 85-1] gi|332101751|gb|EGJ05097.1| conserved hypothetical protein [Shigella sp. D9] Length = 178 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|197301827|ref|ZP_03166897.1| hypothetical protein RUMLAC_00554 [Ruminococcus lactaris ATCC 29176] gi|197299267|gb|EDY33797.1| hypothetical protein RUMLAC_00554 [Ruminococcus lactaris ATCC 29176] Length = 266 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++A + +SA+ +E S + L YE++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDKFKDISHYALIELAKFYEVTVDYL 64 Query: 91 YDGEVIDRRYEDV 103 Sbjct: 65 LGRSQTKNHPNAD 77 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + S L +YE + ++ + + +D Sbjct: 3 LSIQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDKFKDISHYALIELAKFYEVTVD 62 Query: 171 WIY 173 ++ Sbjct: 63 YLL 65 >gi|160945560|ref|ZP_02092786.1| hypothetical protein FAEPRAM212_03089 [Faecalibacterium prausnitzii M21/2] gi|158443291|gb|EDP20296.1| hypothetical protein FAEPRAM212_03089 [Faecalibacterium prausnitzii M21/2] Length = 120 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RKA TQ ++A+ ++ + ENG + S + + +S D I Sbjct: 11 LGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVLPLSLDSII 70 Query: 92 DGEVID 97 + + + Sbjct: 71 NPNLSE 76 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G ++K++RK GM+Q + + ++N E G+ P I V L Sbjct: 7 DAIALGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVLPLSL 66 Query: 170 DWIY 173 D I Sbjct: 67 DSII 70 >gi|222053724|ref|YP_002536086.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563013|gb|ACM18985.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 309 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI--KPARKIKQVTKKHLDWIYFG 175 +K++R+ K ++Q+ ++G+ T+S +E R P I + A K+ + +LD I Sbjct: 23 IKTVRETKKLTQLYVASVVGVTTDTISRWENNRY-PTIKRENAEKLAMALEVNLDEILRH 81 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 + + + + Q KK+++ Sbjct: 82 ETACPSEEVVENELPQPKKKNRR 104 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI--RYALYLRNEYEISFDWI 90 G IK +R+ TQ +A ++ +EN +I A L E++ D I Sbjct: 20 GVTIKTVRETKKLTQLYVASVVGVTTDTISRWENNRY-PTIKRENAEKLAMALEVNLDEI 78 Query: 91 YDGEVIDRRYEDVTNK 106 E E V N+ Sbjct: 79 LRHETACPSEEVVENE 94 >gi|126699634|ref|YP_001088531.1| putative phage regulatory protein [Clostridium difficile 630] gi|254975609|ref|ZP_05272081.1| putative phage regulatory protein [Clostridium difficile QCD-66c26] gi|255092997|ref|ZP_05322475.1| putative phage regulatory protein [Clostridium difficile CIP 107932] gi|255101147|ref|ZP_05330124.1| putative phage regulatory protein [Clostridium difficile QCD-63q42] gi|255307021|ref|ZP_05351192.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] gi|255314738|ref|ZP_05356321.1| putative phage regulatory protein [Clostridium difficile QCD-76w55] gi|255517412|ref|ZP_05385088.1| putative phage regulatory protein [Clostridium difficile QCD-97b34] gi|255650522|ref|ZP_05397424.1| putative phage regulatory protein [Clostridium difficile QCD-37x79] gi|260683623|ref|YP_003214908.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260687283|ref|YP_003218417.1| putative phage regulatory protein [Clostridium difficile R20291] gi|306520479|ref|ZP_07406826.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] gi|115251071|emb|CAJ68902.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209786|emb|CBA63606.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260213300|emb|CBE04858.1| putative phage regulatory protein [Clostridium difficile R20291] Length = 123 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI ++RK + QKE+A E++++ +EN + + L E S D Sbjct: 1 MESLGDRIANLRKELDINQKELATKVGITEASLSRYENNLREPKSEIIVRLAKALETSTD 60 Query: 89 WIYDGEVIDRRYEDVT 104 ++ + ++ Sbjct: 61 YLLGVNDNTKISKEDK 76 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 39/90 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++G R+ ++RK+ ++Q E +G+ ++LS YE P+ + ++ + + D Sbjct: 1 MESLGDRIANLRKELDINQKELATKVGITEASLSRYENNLREPKSEIIVRLAKALETSTD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ ++ + S K K Sbjct: 61 YLLGVNDNTKISKEDKLIIENLSVSEKTKK 90 >gi|163938818|ref|YP_001643702.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861015|gb|ABY42074.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 112 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 34/83 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G RI+ +RK N +Q+ + + + + E G + ++ + +I+ Sbjct: 2 ELTTKLGERIRFLRKEKNLSQERLGELSGIHTNHIGAIERGEKNVTLESLAKVTKGLDIT 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRL 109 + ++ + +D+ L Sbjct: 62 LEELFRYLQPMDKLDDLNTIMEL 84 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +RK+K +SQ G+L G+ + + E+G ++ K+ + L+ ++ Sbjct: 9 ERIRFLRKEKNLSQERLGELSGIHTNHIGAIERGEKNVTLESLAKVTKGLDITLEELF 66 >gi|194431949|ref|ZP_03064239.1| DNA-binding protein [Shigella dysenteriae 1012] gi|331682878|ref|ZP_08383497.1| putative oxidoreductase/putative repressor [Escherichia coli H299] gi|194419857|gb|EDX35936.1| DNA-binding protein [Shigella dysenteriae 1012] gi|320182531|gb|EFW57422.1| Transcriptional regulator yidN, Cro/CI family [Shigella boydii ATCC 9905] gi|331080509|gb|EGI51688.1| putative oxidoreductase/putative repressor [Escherichia coli H299] gi|332094663|gb|EGI99708.1| helix-turn-helix family protein [Shigella dysenteriae 155-74] Length = 178 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|188494052|ref|ZP_03001322.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|331652693|ref|ZP_08353704.1| putative oxidoreductase/putative repressor [Escherichia coli M718] gi|331662905|ref|ZP_08363815.1| putative oxidoreductase/putative repressor [Escherichia coli TA143] gi|188489251|gb|EDU64354.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|331049799|gb|EGI21865.1| putative oxidoreductase/putative repressor [Escherichia coli M718] gi|331058704|gb|EGI30681.1| putative oxidoreductase/putative repressor [Escherichia coli TA143] Length = 178 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQQQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 SATPSV 77 >gi|307267664|ref|ZP_07549123.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306917316|gb|EFN47631.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 427 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 1/103 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +R N +Q E+ ++ E+G S+ YL + E+ + + Sbjct: 5 IGDKIKALRLQKNLSQSELCGNF-MSRVVLSRIESGKALPSLEQLAYLAEKLEVPVSYFF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 ++ N L + I K + F + Sbjct: 64 SDSTGEKYILFEKNSSLLKDLFLAKDYYEIIKWSEENHNAFCE 106 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K++R K +SQ E M LS E G+ +P ++ + + + + + + Sbjct: 9 IKALRLQKNLSQSELCGNF-MSRVVLSRIESGKALPSLEQLAYLAEKLEVPVSYFFSD 65 >gi|306824522|ref|ZP_07457868.1| hypothetical transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433309|gb|EFM36279.1| hypothetical transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 228 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 10/103 (9%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQKE+A A + +E G+ S L +++ + Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLEKILKVAKGYFTQI 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E++ K K + + ++Q E + + Sbjct: 65 EIVRLYNSLSKQGKD----------KVVLYARNLAQEEQAQKV 97 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +LK+ RK+ ++Q E + LG+ S +E+G P + +++++ K Sbjct: 1 MYQPEKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLEKILKV 56 >gi|326317279|ref|YP_004234951.1| XRE family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374115|gb|ADX46384.1| transcriptional regulator, XRE family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 469 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 22/66 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R +Q +A S +N E ++ L + + Sbjct: 6 MGVKLRKLRAERGLSQIALAQALGLSPSYLNQIEQNQRPLTVSVLLKIHRVLGVDVQEFS 65 Query: 92 DGEVID 97 + E Sbjct: 66 EDEEAR 71 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +L+ +R ++G+SQI + LG+ S L+ EQ + + KI +V Sbjct: 1 MKKTFMGVKLRKLRAERGLSQIALAQALGLSPSYLNQIEQNQRPLTVSVLLKIHRVLGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 + +E + +++A Sbjct: 61 VQEFSEDEEARLVAGLRQA 79 >gi|212696475|ref|ZP_03304603.1| hypothetical protein ANHYDRO_01013 [Anaerococcus hydrogenalis DSM 7454] gi|212676568|gb|EEB36175.1| hypothetical protein ANHYDRO_01013 [Anaerococcus hydrogenalis DSM 7454] Length = 66 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ IRK N TQ+E+A + ENG + SI A + + ++ + I+ Sbjct: 3 NRLELIRKENKITQEELASILEVSRQTIGSLENGRYNPSIILAFKIARYFGLTIEDIFIY 62 Query: 94 EVID 97 + D Sbjct: 63 KEED 66 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK+ ++Q E +L + T+ + E GR P I A KI + ++ I+ Sbjct: 1 MKNRLELIRKENKITQEELASILEVSRQTIGSLENGRYNPSIILAFKIARYFGLTIEDIF 60 Query: 174 FGDEV 178 E Sbjct: 61 IYKEE 65 >gi|160933200|ref|ZP_02080589.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] gi|156868274|gb|EDO61646.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] Length = 187 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I+ +RKA + TQ+E+A + ++ +E G+ S+ + + + + D Sbjct: 4 DQIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIEPSVSQLQKIASALGVPMMELLDL 63 Query: 94 EVIDRRYEDVTN 105 E R + N Sbjct: 64 EEGAERIKRDEN 75 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++ +RK ++Q E K +G+ + +S YE G P + +KI + + Sbjct: 1 MKFDQIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIEPSVSQLQKIASALGVPMMEL 60 Query: 173 YFGDE 177 +E Sbjct: 61 LDLEE 65 >gi|153826821|ref|ZP_01979488.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] gi|149739342|gb|EDM53588.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] Length = 181 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K++RK+ + A ++ + E G S +I + + E SF Sbjct: 6 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 65 Query: 88 DWIYDGEVI 96 + + Sbjct: 66 SAFFANDPQ 74 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK++RK +G+S +L G+ + L E+G + P I KI + Sbjct: 5 MFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 64 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 65 FSAFFANDPQLLSSE 79 >gi|170739100|ref|YP_001767755.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193374|gb|ACA15321.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 183 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R++ +R + +Q+ +A A + S ++L E+G + S+ + + I Sbjct: 5 EVGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIGLAEF 64 Query: 91 YDGEVIDRRY 100 + E Sbjct: 65 FSLEPTRTEK 74 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +GARL+ +R G+SQ + G+ NST+S E G+T P + ++I Sbjct: 1 MTNDEVGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIG 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 L + + K+ A+ K + + Sbjct: 61 LAEFFSLEPTRTEKAFYAAEELVEIGKGRISYR 93 >gi|95930066|ref|ZP_01312805.1| putative phage repressor [Desulfuromonas acetoxidans DSM 684] gi|95133760|gb|EAT15420.1| putative phage repressor [Desulfuromonas acetoxidans DSM 684] Length = 230 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 3/93 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G R++ +R + A +S + +E G+ + + + + W Sbjct: 22 KTIGERLRFLRGKQKL--PDFAQRFGVSKSTLGRYEKGISLPDAGFLAAICQQLHVCPQW 79 Query: 90 IY-DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + GE + + D ++ Sbjct: 80 LLMGGEKPCQPFVKDCPSGACDDSGPSCIVRDY 112 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R + + +F + G+ STL YE+G ++P+ I Q W+ G Sbjct: 26 ERLRFLRGKQKLP--DFAQRFGVSKSTLGRYEKGISLPDAGFLAAICQQLHVCPQWLLMG 83 Query: 176 DEVIVPKSIKR 186 E +K Sbjct: 84 GEKPCQPFVKD 94 >gi|254975392|ref|ZP_05271864.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092781|ref|ZP_05322259.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100891|ref|ZP_05329868.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306781|ref|ZP_05350952.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314521|ref|ZP_05356104.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517196|ref|ZP_05384872.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650302|ref|ZP_05397204.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655775|ref|ZP_05401184.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|306520271|ref|ZP_07406618.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 92 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 44/91 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + ++K +R+ G++Q + G+L+G ++ E G+ P I A I ++ + Sbjct: 1 MNGANMKNKIKILREKLGLTQEQLGRLVGTSRQAINAIETGKNEPSIWLAYDISRIFNEP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 ++ ++ +E + ++G K K+ Sbjct: 61 IESVFLFEESERKSRAQISRGEYYGYKKDKN 91 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ +IK +R+ TQ+++ A+N E G SI A + + + + Sbjct: 5 NMKNKIKILREKLGLTQEQLGRLVGTSRQAINAIETGKNEPSIWLAYDISRIFNEPIESV 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E +R+ ++ Y + Sbjct: 65 FLFEESERKSRAQISRGEYYGYKKDKNI 92 >gi|146280149|ref|YP_001170306.1| hypothetical protein Rsph17025_4150 [Rhodobacter sphaeroides ATCC 17025] gi|145558390|gb|ABP73001.1| hypothetical protein Rsph17025_4150 [Rhodobacter sphaeroides ATCC 17025] Length = 96 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 29/91 (31%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 + + Q +VG RI+ R A ++A A++L E G + + Sbjct: 1 MTSKPEAQILTEVGQRIRVRRAAEGLNLGQLARLTGISGPALSLIETGKRDARLTTLARI 60 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 + + + +R + D Sbjct: 61 AAALRVPLEALLADGTRERETARPPVGEGYD 91 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + + +G R++ R +G++ + +L G+ LS E G+ + +I Sbjct: 1 MTSKPEAQILTEVGQRIRVRRAAEGLNLGQLARLTGISGPALSLIETGKRDARLTTLARI 60 Query: 162 KQVTKKHLDWIY 173 + L+ + Sbjct: 61 AAALRVPLEALL 72 >gi|312130936|ref|YP_003998276.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311907482|gb|ADQ17923.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 111 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 29/125 (23%) Query: 47 QKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE-----YEISFDWIYDGEVIDRRYE 101 Q ++A N E + +ENG + + ++ + +E+S + I G Sbjct: 7 QADVARLFNTSEDTITGWENGRSKPQVHFYPHIIDFLGYVPFEVS-EEILGG-------- 57 Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 R+K+ R +G+SQ + GKLL + ST+ ++E G+TIP + KI Sbjct: 58 ---------------RIKAFRLTRGLSQKKMGKLLSVDGSTICSWETGQTIPYKRMIEKI 102 Query: 162 KQVTK 166 ++ Sbjct: 103 VKILD 107 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +G RIK R +QK+M + S + +E G R + + Sbjct: 55 LGGRIKAFRLTRGLSQKKMGKLLSVDGSTICSWETGQTIPYKRMIEKIVKILD 107 >gi|311070727|ref|YP_003975650.1| putative transcriptional regulator [Bacillus atrophaeus 1942] gi|310871244|gb|ADP34719.1| putative transcriptional regulator [Bacillus atrophaeus 1942] Length = 72 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S + + IS + + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSPAIIKDVADALNISAEELAP 66 Query: 93 GEVIDR 98 E ++ Sbjct: 67 PENNNK 72 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+++ RK KG +Q F K LG+ S L E+G +P + + + + Sbjct: 8 RRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSPAIIKDVADALNISAEEL 64 >gi|308186861|ref|YP_003930992.1| hypothetical protein Pvag_1353 [Pantoea vagans C9-1] gi|308057371|gb|ADO09543.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 82 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + R+K IR+ N TQ E+A ++ ++ FEN STS+ L E+S D Sbjct: 7 QLANRLKLIRQRNGWTQSELAKKVGLKQATISHFENAPDSTSLATLFKLLQALEVSLD 64 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK IR+ G +Q E K +G+ +T+S++E + K+ Q + LD Sbjct: 10 NRLKLIRQRNGWTQSELAKKVGLKQATISHFENAPDSTSLATLFKLLQALEVSLD 64 >gi|300117865|ref|ZP_07055632.1| putative transcriptional regulator PlcR [Bacillus cereus SJ1] gi|298724729|gb|EFI65404.1| putative transcriptional regulator PlcR [Bacillus cereus SJ1] Length = 285 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 10/136 (7%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + +G IK IR TQK+++ +S V+ E+G S+ + + ++ Sbjct: 2 HAEKLGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPI 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI--RKDKGMSQIEFGKLLGMPNSTLSN 145 Y+ + + K ++ + K I R + + E+ + L Sbjct: 61 IHFYEVLIYSDIERNKQLKDQIIMLCKQKKYKEIYNRVWNELKKEEY-------HPELQQ 113 Query: 146 YEQGRTIPEIKPARKI 161 + Q + +KI Sbjct: 114 FLQWQYYVSAYILKKI 129 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 4/80 (5%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +K IR +G++Q + + + S +S E G P + + I + Sbjct: 1 MHAEKLGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVP 59 Query: 169 LDWIYFGDEVIVPKSIKRAK 188 + Y EV++ I+R K Sbjct: 60 IIHFY---EVLIYSDIERNK 76 >gi|295401956|ref|ZP_06811918.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975958|gb|EFG51574.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 72 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ RK TQ+ +A S + E G + + IS + + Sbjct: 7 GRRIRAFRKLKGYTQERLAKELGISVSTLGEIERGNRLPTEELVQQIAERLNISVEEL 64 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+++ RK KG +Q K LG+ STL E+G +P + ++I + ++ + Sbjct: 8 RRIRAFRKLKGYTQERLAKELGISVSTLGEIERGNRLPTEELVQQIAERLNISVEEL 64 >gi|289651209|ref|ZP_06482552.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 117 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK + +Q +A V +E G+ + + + ++++ + Sbjct: 8 VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGELL 67 Query: 92 DG 93 G Sbjct: 68 PG 69 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 40/91 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +GA++K++RK GMSQ + +G + YE+G +P ++ KI + Sbjct: 7 YVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 66 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 G + ++ + + + K + D S Sbjct: 67 LPGGQDVLRTRLISLRQAIADKAIEVDSPES 97 >gi|255019083|ref|ZP_05291209.1| transcription regulator, putative [Listeria monocytogenes FSL F2-515] Length = 81 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RIK++R + N TQ+E+ + + ++ E + S SI + + Sbjct: 2 EIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDF 61 Query: 91 YDGEVIDRRYE 101 +D E +++ Sbjct: 62 FDEEEHNQKSN 72 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+K++R K ++Q E G+ + +S E+ + P I+ I +V Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 172 IYFGDEVIVPKSIKRAK 188 + +E +++R + Sbjct: 61 FFDEEEHNQKSNLRRTR 77 >gi|225575526|ref|ZP_03784136.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM 10507] gi|225037276|gb|EEG47522.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM 10507] Length = 124 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G R+K +R KG+SQ E G+ +G + T++ YE+ P+++ R+I + D Sbjct: 1 MTFGERVKELRLKKGLSQRELGERMGGITQQTIAQYEKSENYPKLETIRRIAKALDVPFD 60 Query: 171 WIYFGDEVI---VPKSIKRAKGNQSSKKSKKDKK 201 + D+ + + + + + N S K+ DKK Sbjct: 61 NLVPFDDGLRLWIKEKKQSTQNNISGKRKALDKK 94 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R+K++R +Q+E+ + + +E + + ++ FD + Sbjct: 3 FGERVKELRLKKGLSQRELGERMGGITQQTIAQYEKSENYPKLETIRRIAKALDVPFDNL 62 Query: 91 YD 92 Sbjct: 63 VP 64 >gi|222111450|ref|YP_002553714.1| XRE family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730894|gb|ACM33714.1| transcriptional regulator, XRE family [Acidovorax ebreus TPSY] Length = 271 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW-- 89 G R++ R+ +Q ++A A ++ E G S S L L + ++ Sbjct: 16 FGERLRHWRQHRRLSQLDLAHAAEVSTRHLSCVETGRASPSRDMVLRLAHRLDVPLRERN 75 Query: 90 -IY--DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + G R + + D A R+ Sbjct: 76 ALLVAAGYAPMYRERPLDAPEMADARAAVQRI 107 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 G RL+ R+ + +SQ++ + LS E GR P ++ L Sbjct: 16 FGERLRHWRQHRRLSQLDLAHAAEVSTRHLSCVETGRASPSRDMVLRLAHRLDVPL 71 >gi|168186931|ref|ZP_02621566.1| putative phage related transcriptional regulator [Clostridium botulinum C str. Eklund] gi|169295256|gb|EDS77389.1| putative phage related transcriptional regulator [Clostridium botulinum C str. Eklund] Length = 122 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 37/100 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R N TQ+++A S + E+G S + A L + + + ++ + Sbjct: 4 ISKRLKESRTEVNLTQQQLAEKIGVSTSIIGDIESGRRVASKKTAKKLADFFNTNSEYWF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 D + + LD K I + + Sbjct: 64 DENCLTEYFNKREKYSSLDSVVTTLIDKKIINNSNIPDEA 103 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 3/96 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RLK R + ++Q + + +G+ S + + E GR + K A+K+ + + Sbjct: 1 MTIISKRLKESRTEVNLTQQQLAEKIGVSTSIIGDIESGRRVASKKTAKKLADFFNTNSE 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKK--DKKSSN 204 + + + + KR K + DKK N Sbjct: 61 YWF-DENCLTEYFNKREKYSSLDSVVTTLIDKKIIN 95 >gi|157694291|ref|YP_001488753.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194016401|ref|ZP_03055015.1| HTH-type transcriptional regulator AnsR (Ans operon repressorprotein) [Bacillus pumilus ATCC 7061] gi|157683049|gb|ABV64193.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194011874|gb|EDW21442.1| HTH-type transcriptional regulator AnsR (Ans operon repressorprotein) [Bacillus pumilus ATCC 7061] Length = 115 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 30/85 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +RK + + A +S +E+G S+ L + Y+ S D++ Sbjct: 4 DRLTTLRKKKKWSLQHTADRLGIAKSTYAGYESGYRRPSLEAVKRLADLYDTSIDFLLGR 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 +++ K A + Sbjct: 64 TDEPEIQRKISDIKIELTEAKEGTI 88 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RL ++RK K S LG+ ST + YE G P ++ +++ + +D++ Sbjct: 1 MILDRLTTLRKKKKWSLQHTADRLGIAKSTYAGYESGYRRPSLEAVKRLADLYDTSIDFL 60 Query: 173 YFG-DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 DE + + I K + K P Sbjct: 61 LGRTDEPEIQRKISDIKIELTEAKEGTILVDGVP 94 >gi|119775778|ref|YP_928518.1| XRE family transcriptional regulator [Shewanella amazonensis SB2B] gi|119768278|gb|ABM00849.1| putative transcriptional regulator, XRE family [Shewanella amazonensis SB2B] Length = 182 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 D+G +K +RK +Q+E+A A S +++ E S S+ Sbjct: 2 DIGASLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKK 49 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKH-- 168 IGA LK++RK KG+SQ E K G+ NST+S E+ P + +K + Sbjct: 1 MDIGASLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLA---GIPMS 57 Query: 169 -LDWIYFGDEVIVPKSI 184 +++ GD + I Sbjct: 58 LVEFFSIGDSASAEQKI 74 >gi|322804952|emb|CBZ02511.1| transcriptional regulator [Clostridium botulinum H04402 065] Length = 183 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N + ++A +N + ++ E G + +I + N ++ + + Sbjct: 7 IAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLL 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + D +N + Sbjct: 67 EQKEHDTCIIKKSNLEPQ 84 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK++R ++ +S + +L + LS E+G T P I KI K + Sbjct: 9 ENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY-TLLLE 67 Query: 176 DEVIVPKSIKRAKGNQSSKKS 196 + IK++ + Sbjct: 68 QKEHDTCIIKKSNLEPQISEE 88 >gi|299535967|ref|ZP_07049286.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728572|gb|EFI69128.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 183 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 32/86 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + Q +++ ++K IR+ + + ++A ++ + E G + ++ + Sbjct: 1 MEQMSRNLAFQLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMR 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLD 110 +SF + + +D Sbjct: 61 MSFSSLLQPPTAHYMRYSSKDVPHVD 86 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 +LK IR+ + +S + K G+ + L+ E+G P + KI Sbjct: 11 QLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIA 56 >gi|297198135|ref|ZP_06915532.1| transcriptional regulatory protein [Streptomyces sviceus ATCC 29083] gi|197714170|gb|EDY58204.1| transcriptional regulatory protein [Streptomyces sviceus ATCC 29083] Length = 201 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 24/73 (32%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 ++ + + +K R T +A A + E + S+ + + + Sbjct: 13 SDLDLLTQSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDA 72 Query: 83 YEISFDWIYDGEV 95 IS + D E Sbjct: 73 LGISITTLLDYEQ 85 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K R ++G + G+ L EQ RT P + KI + + Sbjct: 24 RNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGISITTLLDY 83 Query: 176 DE 177 ++ Sbjct: 84 EQ 85 >gi|197285673|ref|YP_002151545.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227356180|ref|ZP_03840569.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194683160|emb|CAR43778.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227163644|gb|EEI48560.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 100 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK+ T ++A + E + +E G+ I + + + I+ + Sbjct: 11 VGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLDVLGINIGNFF 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + N++ + + L Sbjct: 71 EDVMGGMVDVPENNEQHIPAHFDNKAL 97 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 YA+G ++KS+RK +G + + K + + L YE+G +I K+ V ++ Sbjct: 9 YAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLDVLGINIGN 68 Query: 172 IY 173 + Sbjct: 69 FF 70 >gi|168704437|ref|ZP_02736714.1| hypothetical protein GobsU_33184 [Gemmata obscuriglobus UQM 2246] Length = 239 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 6/96 (6%) Query: 2 FLNPF-----LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQ 56 PF E + L+ L+ E + +G I++ RKA + T M+ Sbjct: 140 LTKPFQIEQLREIVYRCLESQGLLRMTE-DALKEALGAAIRERRKALSLTLSNMSDRTGV 198 Query: 57 LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ E G S SI + + ++ Sbjct: 199 SLGYLSQIELGKNSASIETLYRICLALGMKMSELFQ 234 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 12/114 (10%) Query: 70 STSIRYALYLRNEYEISFDWI---YDGEVIDRRYEDVTNKKRLDPY-------AIGARLK 119 S+ A+ + D++ + E + + L A+GA ++ Sbjct: 122 YPSVDSAINCLRA--KTCDYLTKPFQIEQLREIVYRCLESQGLLRMTEDALKEALGAAIR 179 Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RK ++ G+ LS E G+ I+ +I + ++ Sbjct: 180 ERRKALSLTLSNMSDRTGVSLGYLSQIELGKNSASIETLYRICLALGMKMSELF 233 >gi|154502909|ref|ZP_02039969.1| hypothetical protein RUMGNA_00729 [Ruminococcus gnavus ATCC 29149] gi|153796448|gb|EDN78868.1| hypothetical protein RUMGNA_00729 [Ruminococcus gnavus ATCC 29149] Length = 118 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK + TQ+E+A ++ + E G + S L IS D + Sbjct: 9 LGQKMREARKKKDLTQQELADLSHVSIKQIAKIEKGKINPSYLILKALAKVLPISLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + +V K L +R+ E K L Sbjct: 69 NPDVSPEDEGATQ-MKMLYCSCPS----EMRETLLRHTQETAKEL 108 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK K ++Q E L + ++ E+G+ P + + +V L Sbjct: 5 DLTALGQKMREARKKKDLTQQELADLSHVSIKQIAKIEKGKINPSYLILKALAKVLPISL 64 Query: 170 DWIYFGDEVIVPKSIKRAKG 189 D + D + + K Sbjct: 65 DTLINPDVSPEDEGATQMKM 84 >gi|71725303|ref|YP_272277.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558893|gb|AAZ38102.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 118 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK + +Q +A V +E G+ + + + ++++ + Sbjct: 8 VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGELL 67 Query: 92 DG 93 G Sbjct: 68 PG 69 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 40/91 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +GA++K++RK GMSQ + +G + YE+G +P ++ KI + Sbjct: 7 FVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 66 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 G + ++ + + + K + D S Sbjct: 67 LPGGQDVLRTRLISLRQAIADKAIEVDSPES 97 >gi|310827449|ref|YP_003959806.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612] gi|308739183|gb|ADO36843.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612] Length = 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G I+ R+ N Q ++A A ++ VN E G + + + +++ + Sbjct: 1 MMTIGEIIRTAREEKNLNQSQLAAKAGISQATVNYLETGKRNPGFTTIVKIAKVLDLNLE 60 Query: 89 WI 90 + Sbjct: 61 DL 62 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG +++ R++K ++Q + G+ +T++ E G+ P KI +V +L+ Sbjct: 1 MMTIGEIIRTAREEKNLNQSQLAAKAGISQATVNYLETGKRNPGFTTIVKIAKVLDLNLE 60 Query: 171 WI 172 + Sbjct: 61 DL 62 >gi|307608926|emb|CBW98330.1| putative repressor [Legionella pneumophila 130b] Length = 227 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 6/115 (5%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G RI + RKA T K + A ++ + +E G+ + L ++S Sbjct: 8 KEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLARALDVSPA 67 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK-DKGMSQIEFGKLLGMPNST 142 ++ + E + + + + G + + ST Sbjct: 68 YLMCLSDELQFKEAKNPSQLIPLLDY----RQACEATLHTGAESSGDKVFISVST 118 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ RK KG++ G+L G + + L+N+EQG P + + + + ++ Sbjct: 12 KRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLARALDVSPAYLMC 71 Query: 175 GDEVIVPKSIKR 186 + + K K Sbjct: 72 LSDELQFKEAKN 83 >gi|295106118|emb|CBL03661.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 83 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K R +Q ++A ++ E G+ + + + AL L + F+ + Sbjct: 20 ELKNRLKAARAEQGLSQTDLARLVGVSRQTISAIETGLFNPTAKLALVLCIALDKKFEDL 79 Query: 91 YD 92 + Sbjct: 80 FY 81 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK+ R ++G+SQ + +L+G+ T+S E G P K A + K + Sbjct: 19 LELKNRLKAARAEQGLSQTDLARLVGVSRQTISAIETGLFNPTAKLALVLCIALDKKFED 78 Query: 172 IYFGD 176 +++ D Sbjct: 79 LFYFD 83 >gi|261381037|ref|ZP_05985610.1| transcriptional regulator, Cro/CI family [Neisseria subflava NJ9703] gi|284796072|gb|EFC51419.1| transcriptional regulator, Cro/CI family [Neisseria subflava NJ9703] Length = 228 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+++ R+ +Q ++ ++++ E G + + ++S W+ Sbjct: 3 EIKDRLREARRNKGLSQAGLSKLLGVSQASIAAIEAGRNK-RPTNLVSIAKALDVSPYWL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 G+ + T +++ + L Sbjct: 62 ETGKEDKEIISNATPLGKIEEWDNDTPLSE 91 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I RL+ R++KG+SQ KLLG+ ++++ E GR I + Sbjct: 1 MSEIKDRLREARRNKGLSQAGLSKLLGVSQASIAAIEAGRNK-RPTNLVSIAKALDVSPY 59 Query: 171 WIYFGDEV 178 W+ G E Sbjct: 60 WLETGKED 67 >gi|167747456|ref|ZP_02419583.1| hypothetical protein ANACAC_02177 [Anaerostipes caccae DSM 14662] gi|317471184|ref|ZP_07930554.1| hypothetical protein HMPREF1011_00902 [Anaerostipes sp. 3_2_56FAA] gi|167652818|gb|EDR96947.1| hypothetical protein ANACAC_02177 [Anaerostipes caccae DSM 14662] gi|316901331|gb|EFV23275.1| hypothetical protein HMPREF1011_00902 [Anaerostipes sp. 3_2_56FAA] Length = 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI+++RK TQ E+A + ENG S+ A + + ++ + I+ + Sbjct: 4 RIQELRKDQKVTQMELAESVGVTRQTIISLENGRYKASLVLAHKIAQFFGVTIEDIFIFD 63 Query: 95 VIDRR 99 + Sbjct: 64 QEEEN 68 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 35/67 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +RKD+ ++Q+E + +G+ T+ + E GR + A KI Q ++ I+ Sbjct: 1 MKTRIQELRKDQKVTQMELAESVGVTRQTIISLENGRYKASLVLAHKIAQFFGVTIEDIF 60 Query: 174 FGDEVIV 180 D+ Sbjct: 61 IFDQEEE 67 >gi|323700205|ref|ZP_08112117.1| helix-turn-helix domain protein [Desulfovibrio sp. ND132] gi|323460137|gb|EGB16002.1| helix-turn-helix domain protein [Desulfovibrio desulfuricans ND132] Length = 294 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R N T + +A +A+ +E+G + + + ++S + + Sbjct: 11 LGERLRAYRIGKNLTPENVAQRTGISRAAIYRYESGQ-PIRVDVLGKIADLLQVSLESLL 69 >gi|322374209|ref|ZP_08048742.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C150] gi|321276914|gb|EFX53986.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C150] Length = 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R+ GM+Q + +G+ T+ + E R P ++ A KI QV K ++ ++ Sbjct: 10 NLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYNPSLEMALKIAQVFNKQVEELF 66 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + T +K++R+A TQ+++A + EN + S+ AL + + + + Sbjct: 6 KIETNLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYNPSLEMALKIAQVFNKQVEEL 65 Query: 91 YDGE 94 + + Sbjct: 66 FHLK 69 >gi|291540886|emb|CBL13997.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 118 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK TQ+E++ ++ + E G + S L IS D + Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + +V + N+ ++ + ++ Sbjct: 69 NPDVS--LEDYGVNQMKMLYSSCPPEMR 94 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK+K ++Q E L + ++N E+G+ P R + +V L Sbjct: 5 DLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISL 64 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSS 193 D + D + + + K SS Sbjct: 65 DTLINPDVSLEDYGVNQMKMLYSS 88 >gi|206560876|ref|YP_002231641.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036918|emb|CAR52822.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 109 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ R A K+Q+ +A A + ++ E G+ + SI + ++ ++ Sbjct: 20 LGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPSIETLANICYSLNVTLAELF 79 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K R SQ + + +S E+G P I+ I L Sbjct: 18 IALGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPSIETLANICYSLNVTLAE 77 Query: 172 IYFGDE--VIVPKSIKRAKGNQSSKKSKK 198 ++ E + P +RA + ++ Sbjct: 78 LFGPLEGVSLKPTGERRANAATPPEVKRR 106 >gi|16079517|ref|NP_390341.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. subtilis str. 168] gi|221310384|ref|ZP_03592231.1| SinR [Bacillus subtilis subsp. subtilis str. 168] gi|221314708|ref|ZP_03596513.1| SinR [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319631|ref|ZP_03600925.1| SinR [Bacillus subtilis subsp. subtilis str. JH642] gi|221323907|ref|ZP_03605201.1| SinR [Bacillus subtilis subsp. subtilis str. SMY] gi|296333382|ref|ZP_06875835.1| transcriptional regulator SinR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675112|ref|YP_003866784.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. spizizenii str. W23] gi|321311945|ref|YP_004204232.1| transcriptional regulator SinR [Bacillus subtilis BSn5] gi|134504|sp|P06533|SINR_BACSU RecName: Full=HTH-type transcriptional regulator sinR gi|4389349|pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX gi|143547|gb|AAA22757.1| Sin regulatory protein (ttg start codon) [Bacillus subtilis] gi|1303886|dbj|BAA12542.1| SinR [Bacillus subtilis] gi|2634895|emb|CAB14392.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. subtilis str. 168] gi|296149580|gb|EFG90476.1| transcriptional regulator SinR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413356|gb|ADM38475.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. spizizenii str. W23] gi|320018219|gb|ADV93205.1| transcriptional regulator SinR [Bacillus subtilis BSn5] Length = 111 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 4/101 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK RK + E+A A +S ++ E + SI++ + ++S + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 Query: 91 YDGE---VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 D + D + + K D G K R+ Sbjct: 62 LDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQ 102 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K RK+KG S E + G+ S LS+ E+ +T P I+ K+ V + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|163942858|ref|YP_001647742.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865055|gb|ABY46114.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 65 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNTIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 IK++RK N+ TQ EMA + EN + S+ +L + + + + I+ E Sbjct: 7 IKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEEIFTLE 65 >gi|312887654|ref|ZP_07747246.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299869|gb|EFQ76946.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 124 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 7/120 (5%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++ D R K RK + TQ ++A + AV +E+G SI LR++ + Sbjct: 3 KRPVTDYAKRFKIFRKYKDLTQIQIADVLGVTQPAVQKWESGATDLSIEIIQKLRDKLNM 62 Query: 86 SFDWIYDGEVIDRRYEDVTN-KKRLDPYAIGARLKSIR------KDKGMSQIEFGKLLGM 138 S +W + G+ ++ K + + + R K + G+ Sbjct: 63 SLEWFFTGKGTKEFVAAKSSIMKDMATILTDSEMTKFRLQTLEENYKKLHAEFHAFKHGV 122 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R K RK K ++QI+ +LG+ + +E G T I+ +K++ L+W + Sbjct: 9 YAKRFKIFRKYKDLTQIQIADVLGVTQPAVQKWESGATDLSIEIIQKLRDKLNMSLEWFF 68 Query: 174 FGD 176 G Sbjct: 69 TGK 71 >gi|313113316|ref|ZP_07798915.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624369|gb|EFQ07725.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 122 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 44/95 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+++RK TQ+++AI N + + E G S+ + LR + S D+I Sbjct: 23 GERIQNLRKDREVTQEQLAIDLNISDRYMRNLEKGEKVPSVDLFVELRERFGSSLDYIVL 82 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 G +R +++ ++ ++ + + I M Sbjct: 83 GVSASQREQELQDQLQMLRKELKEMQRRILVMLEM 117 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 48/105 (45%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 ++ E+ DP A G R++++RKD+ ++Q + L + + + N E+G +P Sbjct: 2 KLRPLPAEETEGVMFYDPAATGERIQNLRKDREVTQEQLAIDLNISDRYMRNLEKGEKVP 61 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + ++++ LD+I G + + + K+ K+ Sbjct: 62 SVDLFVELRERFGSSLDYIVLGVSASQREQELQDQLQMLRKELKE 106 >gi|288905287|ref|YP_003430509.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306831364|ref|ZP_07464524.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978272|ref|YP_004287988.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732013|emb|CBI13578.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304426600|gb|EFM29712.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178200|emb|CBZ48244.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 226 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 2/97 (2%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++K+IR+ +Q E+A N + +ENG + + L + + Sbjct: 4 GEKLKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSQLLGVEETYFVS 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 I Y + R L +++ + + Q Sbjct: 64 EYDIVDTYFKLNKDNRHKLENYADDL--LKEQEKIVQ 98 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK+IR++KG SQ E KLL + + N+E G+T P K + Q+ + Sbjct: 1 MFSGEKLKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSQLLGVEETY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + IV K K N+ Sbjct: 61 FVS-EYDIVDTYFKLNKDNR 79 >gi|317130366|ref|YP_004096648.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475314|gb|ADU31917.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 302 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I RK+ + +Q E+A G ++ V+ E+G +I L N +S+++ + Sbjct: 7 IGKKILHYRKSIDMSQGELAEGI-CTQAFVSQIESGNAIPNIVIFRGLLNRLGVSYEYFF 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 E +K +D LK R KG+ Q G+ Sbjct: 66 Q-EERPYASYFDEVEKAID------TLKRKRDYKGIKQFILGEK 102 Score = 41.1 bits (95), Expect = 0.084, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 2/91 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++ RK MSQ E + + + +S E G IP I R + + Sbjct: 4 MVPIGKKILHYRKSIDMSQGELAEGI-CTQAFVSQIESGNAIPNIVIFRGLLNRLGVSYE 62 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + +E + + K K+D K Sbjct: 63 YFFQ-EERPYASYFDEVEKAIDTLKRKRDYK 92 >gi|257438307|ref|ZP_05614062.1| prophage LambdaBa04, DNA-binding protein [Faecalibacterium prausnitzii A2-165] gi|257199269|gb|EEU97553.1| prophage LambdaBa04, DNA-binding protein [Faecalibacterium prausnitzii A2-165] Length = 268 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R +E+A +SA+ +E + + L + Y +S D++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + L + A LKS R + + Sbjct: 67 FCRTENRAEINTPLRELHLSD-EMVALLKSGRINNRLLCE 105 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 I RLK +R +KG+ E + G+ S L +YE+ + LD++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 66 Query: 173 YFGDEVIVP 181 + E Sbjct: 67 FCRTENRAE 75 >gi|225376748|ref|ZP_03753969.1| hypothetical protein ROSEINA2194_02390 [Roseburia inulinivorans DSM 16841] gi|225211374|gb|EEG93728.1| hypothetical protein ROSEINA2194_02390 [Roseburia inulinivorans DSM 16841] gi|291524817|emb|CBK90404.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528861|emb|CBK94447.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] gi|291539146|emb|CBL12257.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R N +Q+E+A N +NL E G + S++ + + + + ++ E Sbjct: 5 RLKLARVEMNLSQEELAAKVNVTRPTINLLEGGKFNPSLQLCIRICKVLNKTLNDLFWEE 64 Query: 95 VI 96 Sbjct: 65 DN 66 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RLK R + +SQ E + + T++ E G+ P ++ +I +V K L+ + Sbjct: 1 MKNMRLKLARVEMNLSQEELAAKVNVTRPTINLLEGGKFNPSLQLCIRICKVLNKTLNDL 60 Query: 173 YFGDEVI 179 ++ ++ + Sbjct: 61 FWEEDNL 67 >gi|281356298|ref|ZP_06242790.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281316990|gb|EFB01012.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 193 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +R+ +GTRIK RK T + +A ++ EN S+ + + E Sbjct: 1 MREQLIALGTRIKMARKERKMTLQTLADRTGLTAGLLSKIENFRTIPSLPVLVDIAAALE 60 Query: 85 ISFDWIYDG 93 + Sbjct: 61 TDLAEFFRD 69 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G R+K RK++ M+ G+ LS E RTIP + I + L Sbjct: 6 IALGTRIKMARKERKMTLQTLADRTGLTAGLLSKIENFRTIPSLPVLVDIAAALETDLAE 65 Query: 172 IYFG 175 + Sbjct: 66 FFRD 69 >gi|89897034|ref|YP_520521.1| hypothetical protein DSY4288 [Desulfitobacterium hafniense Y51] gi|89336482|dbj|BAE86077.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 215 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 7/114 (6%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + ++G+ I+ +RK + K++A S ++ E + S S+ + + Sbjct: 36 FLANLGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPI 95 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI------RKDKGMSQIEFGKL 135 + + ++ + G L+ + R G E L Sbjct: 96 SSFFVNPQFTSTHIPAEAQRTI-QINPGMTLRFLINNVGQRNQLGAYIAEVADL 148 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +RK++ +S + + + S LS E+ P + KI + + Sbjct: 44 IRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPISSFF 99 >gi|332666442|ref|YP_004449230.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335256|gb|AEE52357.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 190 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 24/62 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG +I+ +RK +E++ ++ ++ EN S+ + + + Sbjct: 8 KVGRKIRQLRKERGMNLQEVSDKSDITAGLLSRIENFRTLPSLPVLHNISMALNVPLAEL 67 Query: 91 YD 92 D Sbjct: 68 VD 69 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 31/82 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK++GM+ E + LS E RT+P + I L + Sbjct: 13 IRQLRKERGMNLQEVSDKSDITAGLLSRIENFRTLPSLPVLHNISMALNVPLAELVDLVG 72 Query: 178 VIVPKSIKRAKGNQSSKKSKKD 199 + + Q K+ ++D Sbjct: 73 NNGESNYILVRKGQGEKEERED 94 >gi|323126871|gb|ADX24168.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 40/97 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R + +Q +A + A + +E G+ + + L N +++ + + Sbjct: 5 EKLKLKRTEHGFSQLSIAERIGVSKQAYSKWEKGISQPTNENLIKLENLFKVPAGYFNEE 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 E+++ ++ + + + + + S K + Q Sbjct: 65 EILNLYHQLNSPNQSKAITYVRSLVSSQNKVSHLIQE 101 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R + G SQ+ + +G+ S +E+G + P + K++ + K + Sbjct: 1 MYQPEKLKLKRTEHGFSQLSIAERIGVSKQAYSKWEKGISQPTNENLIKLENLFKVPAGY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 F +E I+ + NQS Sbjct: 61 --FNEEEILNLYHQLNSPNQSK 80 >gi|300856317|ref|YP_003781301.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300436432|gb|ADK16199.1| predicted DNA binding protein [Clostridium ljungdahlii DSM 13528] Length = 401 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 38/88 (43%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K RK KT K++A + A++ FENG + + + ++ + ++ Y+ Sbjct: 19 GERLKSARKYRGKTIKDLAEDIGVSKQAISQFENGKSTPLFETLIKIVDKLKFPREYFYE 78 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + ++ + + + ++ Sbjct: 79 KDKVNIQLGNTYFRALSKLTKKEENIQK 106 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 9/117 (7%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 K+++ G RLKS RK +G + + + +G+ +S +E G++ P + Sbjct: 1 MLNGNKEDVGKKINRKFNGERLKSARKYRGKTIKDLAEDIGVSKQAISQFENGKSTPLFE 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVP---------KSIKRAKGNQSSKKSKKDKKSSN 204 KI K ++ Y D+V + + + + N +K+K K N Sbjct: 61 TLIKIVDKLKFPREYFYEKDKVNIQLGNTYFRALSKLTKKEENIQKEKTKFIGKIFN 117 >gi|255263044|ref|ZP_05342386.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255105379|gb|EET48053.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 118 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK+ R ++Q E+A + + +E+G S L + IS + + Sbjct: 9 VGKRIKEARILRGQSQSEIARELDISFQQIQKYESGKNRISASRLFELSQLFGISPSFFF 68 Query: 92 DG 93 DG Sbjct: 69 DG 70 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K R +G SQ E + L + + YE G+ ++ Q+ + + G Sbjct: 11 KRIKEARILRGQSQSEIARELDISFQQIQKYESGKNRISASRLFELSQLFGISPSFFFDG 70 Query: 176 -----DEVIVPKSIKRAK 188 DE P + A+ Sbjct: 71 LEEGADERKQPMDAETAR 88 >gi|238750620|ref|ZP_04612120.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia rohdei ATCC 43380] gi|238711268|gb|EEQ03486.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia rohdei ATCC 43380] Length = 196 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R++ R A T K++A+ ES ++ EN + S S+ L + E + + Sbjct: 14 DLGMRLRHARLAQEITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDL 73 Query: 91 Y 91 Sbjct: 74 M 74 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL+ R + ++ + +G S LS E P + ++ + ++ + Sbjct: 17 MRLRHARLAQEITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74 >gi|228943003|ref|ZP_04105508.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975941|ref|ZP_04136462.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977442|ref|ZP_04137836.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228782266|gb|EEM30450.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228783777|gb|EEM31835.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816667|gb|EEM62787.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938467|gb|AEA14363.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R + TQ+++A ++L E G + S+ L + + + + ++ Sbjct: 4 SKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 94 EVI 96 E Sbjct: 64 EKE 66 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R ++Q + + +G+ T+S E+G+ P + KI K L+ + Sbjct: 1 MAVSKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDL 60 Query: 173 YFGDEV 178 ++ ++ Sbjct: 61 FWEEKE 66 >gi|219855694|ref|YP_002472816.1| hypothetical protein CKR_2351 [Clostridium kluyveri NBRC 12016] gi|219569418|dbj|BAH07402.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK IR TQ+++A + +N EN ++ A L ++ D ++ Sbjct: 6 NKIKTIRNKLGITQEQLAKKCGVVRQTINCIENDKYDPTLELAFKLSKTLKVKVDELFIY 65 Query: 94 E 94 E Sbjct: 66 E 66 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + ++K+IR G++Q + K G+ T++ E + P ++ A K+ + K +D Sbjct: 1 MILLKNKIKTIRNKLGITQEQLAKKCGVVRQTINCIENDKYDPTLELAFKLSKTLKVKVD 60 Query: 171 WIYFGD 176 ++ + Sbjct: 61 ELFIYE 66 >gi|218133297|ref|ZP_03462101.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC 43243] gi|217992170|gb|EEC58174.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC 43243] Length = 154 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 42/99 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +R++++RK TQ+E+A E +++ + G ++ + + S D++ Sbjct: 38 SRLEEMRKEKGFTQRELASKVGVNEVSMSRYIKGERVPTVTTIVSIAQVLGASVDYLVGT 97 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + +R + + + + L ++ D + EF Sbjct: 98 SNVKKRQNNADRIRNMSDEELAQFLCKVKSDYQWMEHEF 136 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 6/94 (6%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + +RL+ +RK+KG +Q E +G+ ++S Y +G +P + I QV Sbjct: 30 NIQCETFISRLEEMRKEKGFTQRELASKVGVNEVSMSRYIKGERVPTVTTIVSIAQVLGA 89 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +D++ ++K+ + N ++ D++ Sbjct: 90 SVDYLVG------TSNVKKRQNNADRIRNMSDEE 117 >gi|182417693|ref|ZP_02949012.1| DNA-binding protein [Clostridium butyricum 5521] gi|237667491|ref|ZP_04527475.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378417|gb|EDT75948.1| DNA-binding protein [Clostridium butyricum 5521] gi|237655839|gb|EEP53395.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 183 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K+IR + N + ++A ++ + E G + ++ + +SF Sbjct: 8 IGNKLKNIRNSRNLSLDDVAELTGVSKAMLGQIERGKSNPTVSTLWKISTGLRVSFSSFI 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D + + ++ + + +L Sbjct: 68 DESKEELKVINIDEIEPVIEEDSTMKL 94 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +LK+IR + +S + +L G+ + L E+G++ P + KI + Sbjct: 6 LVIGNKLKNIRNSRNLSLDDVAELTGVSKAMLGQIERGKSNPTVSTLWKISTGLRVSFSS 65 Query: 172 IY 173 Sbjct: 66 FI 67 >gi|84502833|ref|ZP_01000946.1| acetolactate synthase II large subunit [Oceanicola batsensis HTCC2597] gi|84388816|gb|EAQ01686.1| acetolactate synthase II large subunit [Oceanicola batsensis HTCC2597] Length = 129 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 13/120 (10%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ R +Q MA A + +E G + + + +E+ W+ Sbjct: 1 MGARLTIARNEIGFSQAAMAEAIGVSPRAYHSYEKGERGMPVEALVAMGERFEVDVPWLL 60 Query: 92 DGEVIDRRYEDVTNKKR----LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 G R D K LD + +K + +G + S+ E Sbjct: 61 LGTKSIRAGHDFDALKHIESSLDKHLTDEGIKIKSEKRGAI---------VARWYQSHVE 111 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +GARL R + G SQ + +G+ +YE+G ++ + + + + W+ Sbjct: 1 MGARLTIARNEIGFSQAAMAEAIGVSPRAYHSYEKGERGMPVEALVAMGERFEVDVPWLL 60 Query: 174 FGDEVIVP-------KSIKRAKGNQSSKKSKKDKKSS 203 G + I K I+ + + + K K Sbjct: 61 LGTKSIRAGHDFDALKHIESSLDKHLTDEGIKIKSEK 97 >gi|103487689|ref|YP_617250.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977766|gb|ABF53917.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 73 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 109 LDPYAIGARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + ++++R G M+Q E G+ +G+ T++ EQG+ P ++ A +I V K Sbjct: 1 MAKPPFANDIRTLRFLAGEMTQAELGERVGVTRQTIAAIEQGKYSPSLEVAFRIAHVFGK 60 Query: 168 HLDWIY 173 L+ ++ Sbjct: 61 PLEAVF 66 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%) Query: 36 IKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 I+ +R TQ E+ + E G S S+ A + + + + ++ Sbjct: 10 IRTLRFLAGEMTQAELGERVGVTRQTIAAIEQGKYSPSLEVAFRIAHVFGKPLEAVFQWN 69 Query: 95 V 95 Sbjct: 70 D 70 >gi|49183405|ref|YP_026657.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49479896|ref|YP_034718.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144853|ref|YP_081974.1| PbsX family transcriptional regulator [Bacillus cereus E33L] gi|65317820|ref|ZP_00390779.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|222094186|ref|YP_002528243.1| transcriptional regulator, pbsx family [Bacillus cereus Q1] gi|228913138|ref|ZP_04076777.1| hypothetical protein bthur0012_3820 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925643|ref|ZP_04088732.1| hypothetical protein bthur0010_3700 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931891|ref|ZP_04094787.1| hypothetical protein bthur0009_3770 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944196|ref|ZP_04106575.1| hypothetical protein bthur0007_3720 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089510|ref|ZP_04220779.1| hypothetical protein bcere0021_3560 [Bacillus cereus Rock3-42] gi|229120049|ref|ZP_04249304.1| hypothetical protein bcere0016_3680 [Bacillus cereus 95/8201] gi|229137252|ref|ZP_04265869.1| hypothetical protein bcere0013_3870 [Bacillus cereus BDRD-ST26] gi|229182776|ref|ZP_04310016.1| hypothetical protein bcere0004_3580 [Bacillus cereus BGSC 6E1] gi|229194768|ref|ZP_04321557.1| hypothetical protein bcere0001_3520 [Bacillus cereus m1293] gi|49177332|gb|AAT52708.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49331452|gb|AAT62098.1| transcriptional regulator, PBSX family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978322|gb|AAU19872.1| transcriptional regulator, PBSX family [Bacillus cereus E33L] gi|221238241|gb|ACM10951.1| transcriptional regulator, PBSX family [Bacillus cereus Q1] gi|228588711|gb|EEK46740.1| hypothetical protein bcere0001_3520 [Bacillus cereus m1293] gi|228600749|gb|EEK58329.1| hypothetical protein bcere0004_3580 [Bacillus cereus BGSC 6E1] gi|228646247|gb|EEL02464.1| hypothetical protein bcere0013_3870 [Bacillus cereus BDRD-ST26] gi|228663515|gb|EEL19100.1| hypothetical protein bcere0016_3680 [Bacillus cereus 95/8201] gi|228693817|gb|EEL47511.1| hypothetical protein bcere0021_3560 [Bacillus cereus Rock3-42] gi|228815585|gb|EEM61827.1| hypothetical protein bthur0007_3720 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827871|gb|EEM73609.1| hypothetical protein bthur0009_3770 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834121|gb|EEM79669.1| hypothetical protein bthur0010_3700 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846543|gb|EEM91556.1| hypothetical protein bthur0012_3820 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 83 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I ++R NN +Q +A +N EN S+ A L + D ++ Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLFLY 81 Query: 94 EV 95 + Sbjct: 82 KQ 83 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 21 KNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|304398841|ref|ZP_07380711.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304353545|gb|EFM17922.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 210 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI+ RK+ TQK++A A++ +E L L + Sbjct: 3 NETLGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEETLPRGENLLRLAEALGCAPA 62 Query: 89 WIYDGEVI 96 ++ DG+ Sbjct: 63 FLIDGDGP 70 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 35/75 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G R++ RK ++Q + + + + + +S +E+ T+P + ++ + Sbjct: 1 MKNETLGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEETLPRGENLLRLAEALGCA 60 Query: 169 LDWIYFGDEVIVPKS 183 ++ GD + +S Sbjct: 61 PAFLIDGDGPVFSES 75 >gi|295093800|emb|CBK82891.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 98 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 39/98 (39%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 +K + D A +K+ RK KG+S+ + L + +++ E P ++ K+ Sbjct: 1 MKQDKVKYDFKAFRQAIKAARKAKGISRNQLADTLNIAPRYIASIENSGQHPSLQILYKL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +D +F + + +R S+ D Sbjct: 61 VTLLDVSVDQFFFPEREQEKSTRRRQLDTMLDTMSETD 98 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +++ +K IK RKA ++ ++A N + EN S++ L Sbjct: 5 KVKYDFKAFRQAIKAARKAKGISRNQLADTLNIAPRYIASIENSGQHPSLQILYKLVTLL 64 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRL 109 ++S D + E + + Sbjct: 65 DVSVDQFFFPEREQEKSTRRRQLDTM 90 >gi|257873664|ref|ZP_05653317.1| predicted protein [Enterococcus casseliflavus EC10] gi|257807828|gb|EEV36650.1| predicted protein [Enterococcus casseliflavus EC10] Length = 95 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R K +R+ + KE+ + L+E G + L+ + Y +S D++ Sbjct: 28 RFKFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLLGQT 87 Query: 95 VIDRRY 100 RY Sbjct: 88 ERPERY 93 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 K +R+++G+S E + L + + YE G +P++ + +D++ Sbjct: 30 KFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLL 84 >gi|290580743|ref|YP_003485135.1| hypothetical protein SmuNN2025_1217 [Streptococcus mutans NN2025] gi|254997642|dbj|BAH88243.1| hypothetical protein [Streptococcus mutans NN2025] Length = 79 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G I +RK TQ E+A + AV+ +E + I L +E+S D Sbjct: 4 QTLGMMISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLSFPDINSIPKLAEIFEVSVDD 63 Query: 90 IYDGEVIDRRYEDVTN 105 + + + Sbjct: 64 LMQVKTNTKETIGKNK 79 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 37/65 (56%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G + S+RK+KGM+Q+E + + + + +S +E+ + P+I K+ ++ + Sbjct: 1 MRKQTLGMMISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLSFPDINSIPKLAEIFEVS 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDDLM 65 >gi|239820585|ref|YP_002947770.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805438|gb|ACS22504.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 28/69 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R A + + +A + S ++ E G+ S S+ L +S + Sbjct: 9 IGAQVRALRMAADVSGGALAKASGISASMLSRIERGLVSPSVETLERLSKGLGVSAPRFF 68 Query: 92 DGEVIDRRY 100 + + Sbjct: 69 GDQARRTDF 77 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + L IGA+++++R +S K G+ S LS E+G P ++ ++ + Sbjct: 1 MRSLSAARIGAQVRALRMAADVSGGALAKASGISASMLSRIERGLVSPSVETLERLSKGL 60 Query: 166 KKHLDWIYFGDE 177 +FGD+ Sbjct: 61 GVSAPR-FFGDQ 71 >gi|257064537|ref|YP_003144209.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792190|gb|ACV22860.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 149 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +R TQ+E+A AV+ +E G + ++ L + + + Sbjct: 9 QLRSDRGLTQQELANKLYVTRQAVSRWETGETTPNVDMIKLLAVTLGVPVGVLLE 63 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 AI L +R D+G++Q E L + +S +E G T P + + + + Sbjct: 1 MAIKDILPQLRSDRGLTQQELANKLYVTRQAVSRWETGETTPNVDMIKLLAVTLGVPVGV 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|160934597|ref|ZP_02081983.1| hypothetical protein CLOLEP_03470 [Clostridium leptum DSM 753] gi|156866050|gb|EDO59422.1| hypothetical protein CLOLEP_03470 [Clostridium leptum DSM 753] Length = 268 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R +E+A +SA+ +E + + L + Y +S D++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLITLADFYGVSLDYL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + L + A LKS R + + Sbjct: 67 FCRTENRAEINTPLRELHLSD-EMVALLKSGRINNRLLCE 105 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 I RLK +R +KG+ E + G+ S L +YE+ + LD++ Sbjct: 7 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLITLADFYGVSLDYL 66 Query: 173 YFGDEVIVP 181 + E Sbjct: 67 FCRTENRAE 75 >gi|254974648|ref|ZP_05271120.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092038|ref|ZP_05321516.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255313774|ref|ZP_05355357.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516456|ref|ZP_05384132.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649554|ref|ZP_05396456.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260682721|ref|YP_003214006.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686319|ref|YP_003217452.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306519681|ref|ZP_07406028.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260208884|emb|CBA61852.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212335|emb|CBE03128.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 183 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 34/94 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +VG ++ +R+ + + + ++ + E G S ++ + + ++ Sbjct: 1 MDNKFPNVGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 I+F + + + + +L Sbjct: 61 INFTTLLNENTNTYEVIKKEEVEPIVEQKGNMKL 94 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R++ G+S + K+ G+ + L E+G + P + KI K + + Sbjct: 10 ENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLLNE 69 Query: 176 D----EVIVPKSIK---RAKGNQS 192 + EVI + ++ KGN Sbjct: 70 NTNTYEVIKKEEVEPIVEQKGNMK 93 >gi|46019833|emb|CAE52357.1| putative transcriptional regulator [Streptococcus thermophilus] Length = 62 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +IK++R T+ ++A + + +E GM S++YA+ L +EIS D + + Sbjct: 2 KIKELRVERGLTKVQLAKELGVNKRTILRWEQGMMCMSLKYAVRLAKFFEISLDELVE 59 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 33/58 (56%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K +R ++G+++++ K LG+ T+ +EQG +K A ++ + + LD + Sbjct: 1 MKIKELRVERGLTKVQLAKELGVNKRTILRWEQGMMCMSLKYAVRLAKFFEISLDELV 58 >gi|19745476|ref|NP_606612.1| hypothetical protein spyM18_0360 [Streptococcus pyogenes MGAS8232] gi|19747592|gb|AAL97111.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232] Length = 112 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK +R+A TQ A A+ ++ + E+ + S++ + + + W+ + Sbjct: 4 RIKYLRQALGLTQSAFAAKAHVHKNMIANHESQNSNPSLKQIEKIALAFNVEPAWLAGWD 63 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + DP A R E G+L+ S Y+ Sbjct: 64 TKPQIVIKEKVVRVQDPSA--------RIPNDWKNDECGRLIKWKESGKQFYKSFG 111 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +R+ G++Q F + + ++N+E + P +K KI W+ Sbjct: 5 IKYLRQALGLTQSAFAAKAHVHKNMIANHESQNSNPSLKQIEKIALAFNVEPAWL 59 >gi|28900055|ref|NP_799710.1| hypothetical protein VPA0200 [Vibrio parahaemolyticus RIMD 2210633] gi|260362248|ref|ZP_05775227.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus K5030] gi|260880630|ref|ZP_05892985.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus AN-5034] gi|308095335|ref|ZP_05905081.2| transcriptional regulator, XRE family [Vibrio parahaemolyticus Peru-466] gi|28808338|dbj|BAC61543.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086815|gb|EFO36510.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus Peru-466] gi|308092173|gb|EFO41868.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus AN-5034] gi|308115606|gb|EFO53146.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus K5030] Length = 518 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 31/171 (18%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK N+ T ++++ S +++ E G SI + ++ Sbjct: 14 LGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVFQ 73 Query: 85 ISFDWIYDGEVI-DRRYEDVTNKKRLDPYA------IGARLKSIRKDKGMSQ-----IEF 132 W D E + + N+ ++ A + I + +SQ +F Sbjct: 74 KDPAWFLDDEPELEAITPNKGNRGGINGMALEPSFLFSNDILQIAIPEMLSQTGITGRQF 133 Query: 133 GKLL-----GMPNSTLSNYEQ-------GRTIPEIKPARKIKQVTKKHLDW 171 LL + + E+ R ++ I + + W Sbjct: 134 AHLLIRAHQENHQNHFPDLERAAEEVGLKRLNLSVEDLIDIAKSMGLDIRW 184 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK+ ++ + + + + S LS E+G+ +P I I +V Sbjct: 12 HFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K W D+ ++I KGN+ Sbjct: 72 FQKDPAWFL--DDEPELEAITPNKGNR 96 >gi|75762955|ref|ZP_00742756.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489557|gb|EAO52972.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 204 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 20 MEEIQLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKVILRNDVQAL 104 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LKSIR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFTSLI 86 >gi|58697513|ref|ZP_00372774.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58536024|gb|EAL59708.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 247 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 31/96 (32%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + +G +IK+ R TQK++A + ++ +E G + + + Sbjct: 152 VEEKTGSIYYQIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIA 211 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 IS + E E K Sbjct: 212 ETLSISITDLLIEEDEIVESELPDLIKEYKKIESQE 247 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 3/99 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ R TQK++A V +E G SI + + + Sbjct: 9 KIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDL 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGM 127 ++ ++ L+ + + +RK + Sbjct: 69 IPV-SSEKICLKNEEEEILNLVRKYKTINDQELRKVFYL 106 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 1/115 (0%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 IS D I + E V K Y IG ++K R + +Q + + + + Sbjct: 134 GISVD-IVSQAIGLSANECVEEKTGSIYYQIGKKIKEWRLVREYTQKDLAEKMDTTRDEI 192 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 SNYEQGR ++ I + + + ++ IV + +S++ Sbjct: 193 SNYEQGRVAIPLEKLYAIAETLSISITDLLIEEDEIVESELPDLIKEYKKIESQE 247 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y I +++S R +G +Q + +G+ + YE+G I+ I +V + Sbjct: 8 YKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIID 67 Query: 172 IY 173 + Sbjct: 68 LI 69 >gi|315615352|gb|EFU95984.1| helix-turn-helix family protein [Escherichia coli 3431] Length = 192 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 4/123 (3%) Query: 11 LKSLQEYTLIITPEIRQ---YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG 67 ++ + EY L +Q + + ++ R+A T E+A + E + +E+G Sbjct: 69 MEFIHEYALSAASPAQQKQSFPESWLVNLRTQREACGLTTAELARLLDLDEEIIIQWESG 128 Query: 68 MCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL-KSIRKDKG 126 +I + L N + GEV ++ D L + K Sbjct: 129 EYEPTISMLIPLANILGCDPMCLLTGEVTPPEQPKSEEQQHHDASQQVCPLSREALLRKN 188 Query: 127 MSQ 129 Q Sbjct: 189 QYQ 191 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 3/112 (2%) Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 E I + + + + + L++ R+ G++ E +LL + Sbjct: 61 SKELGIEVMEFIHEYALSAASPAQQKQSFPESWLVN--LRTQREACGLTTAELARLLDLD 118 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + +E G P I + + + G EV P+ K + Sbjct: 119 EEIIIQWESGEYEPTISMLIPLANILGCDPMCLLTG-EVTPPEQPKSEEQQH 169 >gi|294497044|ref|YP_003560744.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294346981|gb|ADE67310.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 180 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 27/65 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R TQ+E+ + + ++ E + S S+ + Sbjct: 2 EIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKEF 61 Query: 91 YDGEV 95 ++ + Sbjct: 62 FEIDT 66 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R KG++Q E G+ + +S E+ + P ++ I +V Sbjct: 1 MEIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + D + + + K Sbjct: 61 FFEIDTHVQKVVYREEDYTSYCEDEK 86 >gi|228952792|ref|ZP_04114863.1| hypothetical protein bthur0006_21880 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806889|gb|EEM53437.1| hypothetical protein bthur0006_21880 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 204 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 20 MEEIQLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKVILRKDIQVL 104 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LKSIR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 88 Query: 176 DEVIVPKSIKR 186 + +++ Sbjct: 89 PQPDTKVILRK 99 >gi|169824259|ref|YP_001691870.1| Cro/CI family transcriptional regulator [Finegoldia magna ATCC 29328] gi|167831064|dbj|BAG07980.1| putative transcriptional regulator Cro/CI family [Finegoldia magna ATCC 29328] Length = 179 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 39/91 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ +R TQ+E+A ++ + ++ E + S S+ Y+ N Sbjct: 2 EIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDMATF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + + + + ++ + + + Sbjct: 62 FADDLSVKEIFTKEDYQSSEDVSMKSSITWL 92 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++S+R G++Q E + + +S E+ T P + + + Sbjct: 1 MEIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDMAT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + D++ V + + S S K Sbjct: 61 FFA-DDLSVKEIFTKEDYQSSEDVSMKS 87 >gi|153837553|ref|ZP_01990220.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus AQ3810] gi|149749149|gb|EDM59954.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus AQ3810] Length = 518 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 31/171 (18%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK N+ T ++++ S +++ E G SI + ++ Sbjct: 14 LGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVFQ 73 Query: 85 ISFDWIYDGEVI-DRRYEDVTNKKRLDPYA------IGARLKSIRKDKGMSQ-----IEF 132 W D E + + N+ ++ A + I + +SQ +F Sbjct: 74 KDPAWFLDDEPELEAITPNKGNRGGINGMALEPSFLFSNDILQIAIPEMLSQTGITGRQF 133 Query: 133 GKLL-----GMPNSTLSNYEQ-------GRTIPEIKPARKIKQVTKKHLDW 171 LL + + E+ R ++ I + + W Sbjct: 134 AHLLIRAHQENHQNHFPDLERAAEEVGLKRLNLSVEDLIDIAKSMGLDIRW 184 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK+ ++ + + + + S LS E+G+ +P I I +V Sbjct: 12 HFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K W D+ ++I KGN+ Sbjct: 72 FQKDPAWFL--DDEPELEAITPNKGNR 96 >gi|16079416|ref|NP_390240.1| transcriptional regulator of ansAB (Xre family) [Bacillus subtilis subsp. subtilis str. 168] gi|221310278|ref|ZP_03592125.1| XRE family transcriptional regulatot [Bacillus subtilis subsp. subtilis str. 168] gi|221314601|ref|ZP_03596406.1| XRE family transcriptional regulatot [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319524|ref|ZP_03600818.1| XRE family transcriptional regulatot [Bacillus subtilis subsp. subtilis str. JH642] gi|221323800|ref|ZP_03605094.1| XRE family transcriptional regulatot [Bacillus subtilis subsp. subtilis str. SMY] gi|321311836|ref|YP_004204123.1| transcriptional regulator of ansAB (Xre family) protein [Bacillus subtilis BSn5] gi|584759|sp|Q07683|ANSR_BACSU RecName: Full=HTH-type transcriptional regulator AnsR; AltName: Full=Ans operon repressor protein gi|387575|gb|AAA72333.1| ans repressor [Bacillus subtilis] gi|1303986|dbj|BAA12641.1| AnsR [Bacillus subtilis] gi|2634794|emb|CAB14291.1| transcriptional regulator of ansAB (Xre family) [Bacillus subtilis subsp. subtilis str. 168] gi|291484791|dbj|BAI85866.1| XRE family transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|320018110|gb|ADV93096.1| transcriptional regulator of ansAB (Xre family) protein [Bacillus subtilis BSn5] Length = 116 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK N + + A +S +E+G S+ L + ++ + D + Sbjct: 4 DRLTELRKKKNWSLQYTADLLGIAKSTYAGYESGYRRPSLEALAMLADLFDTTCDELLGR 63 Query: 94 EVIDRRYED 102 E + Sbjct: 64 EKQKQTAPQ 72 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL +RK K S LLG+ ST + YE G P ++ + + D + Sbjct: 1 MNLDRLTELRKKKNWSLQYTADLLGIAKSTYAGYESGYRRPSLEALAMLADLFDTTCDEL 60 Query: 173 YFGDE 177 ++ Sbjct: 61 LGREK 65 >gi|113460568|ref|YP_718632.1| transcriptional regulator [Haemophilus somnus 129PT] gi|112822611|gb|ABI24700.1| transcriptional regulator [Haemophilus somnus 129PT] Length = 146 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++K IR TQKE+AI + ++A+ +E G S +I + + + D Sbjct: 4 GKKLKQIRLFRKLTQKELAIMSGLTDAAIRNYELGNRSPNIEQLQKIADALNCDISALID 63 Query: 93 GEVIDRRYED 102 + Sbjct: 64 HDPNSIFEIM 73 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK IR + ++Q E + G+ ++ + NYE G P I+ +KI + Sbjct: 1 MISGKKLKQIRLFRKLTQKELAIMSGLTDAAIRNYELGNRSPNIEQLQKIADALNCDISA 60 Query: 172 IYFGD 176 + D Sbjct: 61 LIDHD 65 >gi|295108145|emb|CBL22098.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 140 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E R + +G +K R+ TQ +A + + + EN S L + Sbjct: 5 ERRFDFHGLGLALKQAREEKGWTQAYVAKLVGKTDRTIMNIENKGQHPSFNLFFKLVTLF 64 Query: 84 EISFDWIYDGEVI----------DRRYEDVTNKKRLDPYAIGARLKSIRK 123 +IS D + E D + K+ + A LK R+ Sbjct: 65 DISVDQFFYTEGQRGENSCRKHIDVLLSSMNEKELVVMEATAKGLKKARE 114 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 +++R D + +G LK R++KG +Q KL+G + T+ N E P K+ Sbjct: 1 MNQDERRFDFHGLGLALKQAREEKGWTQAYVAKLVGKTDRTIMNIENKGQHPSFNLFFKL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +D ++ + S ++ S ++K+ Sbjct: 61 VTLFDISVDQFFYTEGQRGENSCRKHIDVLLSSMNEKE 98 >gi|281178569|dbj|BAI54899.1| conserved hypothetical protein [Escherichia coli SE15] Length = 178 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQRQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKSIKRAK 188 P + Sbjct: 72 SATPSVYDPQR 82 >gi|295676649|ref|YP_003605173.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] gi|295436492|gb|ADG15662.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 291 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 4/84 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW- 89 D+G+ ++ R +Q ++++ A + ++ E+G L L ++ Sbjct: 14 DLGSLLRYWRDVRGVSQLDLSLEAGFSQRQISFIESGRSVPGRDTLLTLAQTLDVPLRER 73 Query: 90 ---IYDGEVIDRRYEDVTNKKRLD 110 + E N + + Sbjct: 74 NALLLAAGYAPVYSEAPWNAQEMH 97 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R +G+SQ++ G +S E GR++P + Q L Sbjct: 19 LRYWRDVRGVSQLDLSLEAGFSQRQISFIESGRSVPGRDTLLTLAQTLDVPL 70 >gi|302560110|ref|ZP_07312452.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302477728|gb|EFL40821.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 285 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 Score = 44.6 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV-------E 68 Query: 176 DEVIVPKSIKRAKGNQ 191 D+ IV ++ AK ++ Sbjct: 69 DQRIVESLMQMAKDSR 84 >gi|238923032|ref|YP_002936545.1| hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656] gi|238874704|gb|ACR74411.1| Hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656] Length = 147 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ R TQKE+AI + ESA+ +E G S + N +IS Sbjct: 3 VGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP---- 58 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ 129 V+ L L + R + G+ Q Sbjct: 59 YAMSDPNFDTYVSVMHALFALEDQYGLHAYRDESGVPQ 96 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +G +++ R D+G +Q E + G+ S + NYE G P + KI K Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP 58 >gi|227329661|ref|ZP_03833685.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 188 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/77 (11%), Positives = 26/77 (33%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + +G +K +R+ + A ++ + E G S ++ + + Sbjct: 3 DELTRRIGNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGMNV 62 Query: 86 SFDWIYDGEVIDRRYED 102 +F + + D Sbjct: 63 AFSSFIEPTLADEDVTY 79 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 LK++R++KG S + G+ + L E+G + P + KI Sbjct: 11 NTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIA 57 >gi|291087116|ref|ZP_06345452.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075696|gb|EFE13060.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 266 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++A + +SA+ +E S + L YE++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEADEYKDISHYALIELAKFYEVTVDYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 RL + LKS R D + Sbjct: 65 LGRSQTKNHPNADLADLRLSD-DMIELLKSGRVDNSLLCE 103 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLDWI 172 I RLK +R ++G++ + + + S L +YE ++ + + +D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEADEYKDISHYALIELAKFYEVTVDYL 64 Query: 173 Y 173 Sbjct: 65 L 65 >gi|218704902|ref|YP_002412421.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|293404913|ref|ZP_06648905.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1412] gi|298380556|ref|ZP_06990155.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1302] gi|300900069|ref|ZP_07118264.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|331646712|ref|ZP_08347815.1| putative oxidoreductase/putative repressor [Escherichia coli M605] gi|218431999|emb|CAR12884.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|291427121|gb|EFF00148.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1412] gi|298277998|gb|EFI19512.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1302] gi|300356415|gb|EFJ72285.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|323187286|gb|EFZ72597.1| helix-turn-helix family protein [Escherichia coli RN587/1] gi|330911245|gb|EGH39755.1| transcriptional regulator yidN, Cro/CI family [Escherichia coli AA86] gi|331045464|gb|EGI17591.1| putative oxidoreductase/putative repressor [Escherichia coli M605] Length = 178 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQRQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKSIKRAK 188 P + Sbjct: 72 SATPSVYDPQR 82 >gi|215486671|ref|YP_002329102.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312969257|ref|ZP_07783462.1| helix-turn-helix family protein [Escherichia coli 2362-75] gi|215264743|emb|CAS09124.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312286144|gb|EFR14059.1| helix-turn-helix family protein [Escherichia coli 2362-75] Length = 178 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQRQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKSIKRAK 188 P + Sbjct: 72 SATPSVYDPQR 82 >gi|187934446|ref|YP_001886145.1| MerR family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722599|gb|ACD23820.1| transcriptional regulator, MerR family [Clostridium botulinum B str. Eklund 17B] Length = 118 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG ++K R + T KE+ S ++ EN + SI L ++ + Sbjct: 3 VGEKLKLFRNKKDLTLKELNKLTGISISFISDIENNRRNPSIDNLKILAKALDVQVSQLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 D ++++ +LD ++ Sbjct: 63 DEGTSRLPQKNISIDDKLDELEEDMKI 89 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ++G +LK R K ++ E KL G+ S +S+ E R P I + + + + Sbjct: 1 MSVGEKLKLFRNKKDLTLKELNKLTGISISFISDIENNRRNPSIDNLKILAKALDVQVSQ 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + DE K + + ++D K Sbjct: 61 LL--DEGTSRLPQKNISIDDKLDELEEDMK 88 >gi|164687060|ref|ZP_02211088.1| hypothetical protein CLOBAR_00686 [Clostridium bartlettii DSM 16795] gi|164603945|gb|EDQ97410.1| hypothetical protein CLOBAR_00686 [Clostridium bartlettii DSM 16795] Length = 209 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 1/107 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + I RK + TQKE+ + N + ++ +E+G+ I L N +++ + Sbjct: 4 RKIEKLIVSKRKEKSMTQKELGLKINVSDKTISKWESGLGLPDISSIESLANVLDLNVNE 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 I G+V + D+ N KR Y G I + G+ L Sbjct: 64 ILTGDV-NINDNDMANMKRTKFYFCGKCGNIIASTNNVILNCCGQKL 109 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D I + S RK+K M+Q E G + + + T+S +E G +P+I + V + Sbjct: 1 MDSRKIEKLIVSKRKEKSMTQKELGLKINVSDKTISKWESGLGLPDISSIESLANVLDLN 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQ 191 ++ I GD I + K + Sbjct: 61 VNEILTGDVNINDNDMANMKRTK 83 >gi|157693531|ref|YP_001487993.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157682289|gb|ABV63433.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 125 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + ++R+ + ++ +A S +E G+ + + Y +S D++ Sbjct: 6 GKILTELREKHGWSKSTVAKKLGLKAMSTYANWEYGLRKPDGEMIVKIAELYGVSTDYLL 65 Query: 92 DGEVI 96 G+ Sbjct: 66 TGKDK 70 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 L +R+ G S+ K LG+ ST +N+E G P+ + KI ++ D++ Sbjct: 7 KILTELREKHGWSKSTVAKKLGLKAMSTYANWEYGLRKPDGEMIVKIAELYGVSTDYLLT 66 Query: 175 GDE 177 G + Sbjct: 67 GKD 69 >gi|91210676|ref|YP_540662.1| hypothetical protein UTI89_C1653 [Escherichia coli UTI89] gi|117623680|ref|YP_852593.1| hypothetical protein APECO1_579 [Escherichia coli APEC O1] gi|218558366|ref|YP_002391279.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|237705412|ref|ZP_04535893.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91072250|gb|ABE07131.1| hypothetical protein YdcN [Escherichia coli UTI89] gi|115512804|gb|ABJ00879.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218365135|emb|CAR02845.1| putative DNA-binding transcriptional regulator [Escherichia coli S88] gi|222033183|emb|CAP75923.1| Uncharacterized HTH-type transcriptional regulator [Escherichia coli LF82] gi|226900169|gb|EEH86428.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294493300|gb|ADE92056.1| DNA-binding protein [Escherichia coli IHE3034] gi|307627046|gb|ADN71350.1| putative DNA-binding transcriptional regulator [Escherichia coli UM146] gi|312946016|gb|ADR26843.1| putative DNA-binding transcriptional regulator [Escherichia coli O83:H1 str. NRG 857C] gi|315289769|gb|EFU49159.1| helix-turn-helix protein [Escherichia coli MS 110-3] gi|323952682|gb|EGB48551.1| helix-turn-helix protein [Escherichia coli H252] gi|323956844|gb|EGB52577.1| helix-turn-helix protein [Escherichia coli H263] Length = 178 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 25/85 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F ++ + Sbjct: 61 VPFSTFISPPQSATPSVYDPQRQAM 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKSIKRAK 188 P + Sbjct: 72 SATPSVYDPQR 82 >gi|332522412|ref|ZP_08398664.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332313676|gb|EGJ26661.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 232 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 36/101 (35%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+R+K++R +Q E+A ++ N +E+G + + L ++ + Sbjct: 4 GSRLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLSALARILDVPTTYFES 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 I Y ++ + + L ++ F Sbjct: 64 EYKIVNTYLQLSTENQGKVDEYAEGLLQAQESHDNVIPLFA 104 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G+RLK +R +K SQ E LL + ++ + +E G+++P K + ++ + Sbjct: 1 MFSGSRLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLSALARILDVPTTY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|298693687|gb|ADI96909.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED133] gi|302332086|gb|ADL22279.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus JKD6159] Length = 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G++Q + KL G+ T+S E+ +P + A KI ++ + ++ I+ Sbjct: 1 MRNRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNFMPSVLTAIKIARIFNETVETIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IIEED 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q ++A A ++L E S+ A+ + + + + I+ Sbjct: 3 NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNFMPSVLTAIKIARIFNETVETIFII 62 Query: 94 EVID 97 E + Sbjct: 63 EEDE 66 >gi|284802532|ref|YP_003414397.1| hypothetical protein LM5578_2288 [Listeria monocytogenes 08-5578] gi|284995674|ref|YP_003417442.1| hypothetical protein LM5923_2239 [Listeria monocytogenes 08-5923] gi|284058094|gb|ADB69035.1| hypothetical protein LM5578_2288 [Listeria monocytogenes 08-5578] gi|284061141|gb|ADB72080.1| hypothetical protein LM5923_2239 [Listeria monocytogenes 08-5923] Length = 423 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+IRK T K++A G + ENG+ S+ +++ +I + + Sbjct: 4 IGLRIKNIRKEKKLTLKDVAQGI-ISVPYLANIENGIKVASLETLIHIARRLDIPEEILL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E + R + + LK I Sbjct: 63 MSEDEENRALLKELDEIFELLVCSN-LKEI 91 Score = 44.2 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+IRK+K ++ + + + + L+N E G + ++ I + + + ++ Sbjct: 8 IKNIRKEKKLTLKDVAQGI-ISVPYLANIENGIKVASLETLIHIARRLDIPEEILLMSED 66 Query: 178 VIVPKSIKRAK--------GNQSSKKSKKDKKSSN 204 +K N +S+ +K + N Sbjct: 67 EENRALLKELDEIFELLVCSNLKEIESRLEKIAEN 101 >gi|228962984|ref|ZP_04124195.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796705|gb|EEM44103.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 136 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 50/139 (35%), Gaps = 17/139 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K +R ++K++A + + +E+G + + + N + +S + Sbjct: 4 FGQNLKKLRGMRGMSRKDLANELDIPYVTLTTWESGSRIPNSDKLIPIANFFGVSVSDLV 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + + + ++ +K D RL + +K S +P+ + E+ Sbjct: 64 EKTIDNNEILNMYHKSNGDCEDPIKRLTAALYEKYKS---------VPDQYKAEIEKE-- 112 Query: 152 IPEIKPARKIKQVTKKHLD 170 + + K +D Sbjct: 113 ------ILRYADLLKLDID 125 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK +R +GMS+ + L +P TL+ +E G IP I + Sbjct: 1 MNTFGQNLKKLRGMRGMSRKDLANELDIPYVTLTTWESGSRIPNSDKLIPIANFFGVSVS 60 Query: 171 WIY 173 + Sbjct: 61 DLV 63 >gi|225028123|ref|ZP_03717315.1| hypothetical protein EUBHAL_02393 [Eubacterium hallii DSM 3353] gi|224954593|gb|EEG35802.1| hypothetical protein EUBHAL_02393 [Eubacterium hallii DSM 3353] Length = 178 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++G +IK++R TQ+E+A A + ++ E M S SI L + Sbjct: 2 ELGEKIKELRNKQGLTQEELADRAELSKGFISQLERDMTSPSIATLEDLLQCLGTTL 58 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +G ++K +R +G++Q E + +S E+ T P I + Q L Sbjct: 1 MELGEKIKELRNKQGLTQEELADRAELSKGFISQLERDMTSPSIATLEDLLQCLGTTL 58 >gi|212635362|ref|YP_002311887.1| Repressor of flagellae [Shewanella piezotolerans WP3] gi|212556846|gb|ACJ29300.1| Repressor of flagellae, putative [Shewanella piezotolerans WP3] Length = 116 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 2/97 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G IK RK+ T+ E+ + + ++ E G + ++ + + S D I Sbjct: 3 IGENIKLKRKSLGMTRSELIDRSGVSTAQLSRMERGEQNNPNLETLVAISTALNTSIDEI 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 GE L P +K + K M Sbjct: 63 VFGEQSTSSIYLSKTIDTL-PIDKKTFIKEVIKMAVM 98 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLD 170 IG +K RK GM++ E G+ + LS E+ + P ++ I +D Sbjct: 1 MTIGENIKLKRKSLGMTRSELIDRSGVSTAQLSRMERGEQNNPNLETLVAISTALNTSID 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 I FG++ + + K K+ Sbjct: 61 EIVFGEQSTSSIYLSKTIDTLPIDKKTFIKE 91 >gi|254426736|ref|ZP_05040449.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335] gi|196187377|gb|EDX82346.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335] Length = 96 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K++RK + ++Q ++A AVN FE+G S+ A L + ++ + ++ E Sbjct: 1 MKELRKLHRRSQADLARELGVSRQAVNGFESGKFDPSLEMAFKLSGLFNVAIEDVFIYEA 60 Query: 96 IDRRYEDVTNKKRL 109 + V K Sbjct: 61 KNSMQALVERVKDF 74 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K +RK SQ + + LG+ ++ +E G+ P ++ A K+ + ++ ++ + Sbjct: 1 MKELRKLHRRSQADLARELGVSRQAVNGFESGKFDPSLEMAFKLSGLFNVAIEDVFIYE 59 >gi|83593377|ref|YP_427129.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576291|gb|ABC22842.1| Transcriptional Regulator, XRE family with Cupin sensor domain [Rhodospirillum rubrum ATCC 11170] Length = 188 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 DVG R++ IR+A +Q+E+A A ++L E S S+ + ++ Sbjct: 4 DVGARLRAIREAKALSQRELARRAGVTNGTISLIEQNQSSPSVASLRKVLQGIPMTLAEF 63 Query: 91 YDGEVIDRRYEDVTNKK 107 + E + Sbjct: 64 FSQETPPPDQIVFRPDE 80 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 11/91 (12%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK--------IKQ 163 + +GARL++IR+ K +SQ E + G+ N T+S EQ ++ P + RK + + Sbjct: 3 FDVGARLRAIREAKALSQRELARRAGVTNGTISLIEQNQSSPSVASLRKVLQGIPMTLAE 62 Query: 164 VTKK---HLDWIYFGDEVIVPKSIKRAKGNQ 191 + D I F + + + + + N+ Sbjct: 63 FFSQETPPPDQIVFRPDELAELTNEIQRRNE 93 >gi|323465548|gb|ADX77701.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 63 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+ + RK +Q E++ +NL EN + S++ + + ++ + I+ Sbjct: 3 NRLVEYRKKCGISQLELSRKVGVSRQTINLIENNKYNPSLKLCISICLTLGVTLNDIF 60 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL RK G+SQ+E + +G+ T++ E + P +K I L+ I+ Sbjct: 1 MMNRLVEYRKKCGISQLELSRKVGVSRQTINLIENNKYNPSLKLCISICLTLGVTLNDIF 60 Query: 174 FGD 176 + D Sbjct: 61 WED 63 >gi|301310342|ref|ZP_07216281.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] gi|300831916|gb|EFK62547.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] Length = 83 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK+ N T +A + AV+ G S S+ + + + +S + E Sbjct: 4 RIKEFMNERNITSAWLAKQVGISKVAVSNIVTGKSSPSLDNIIKIASVLNVSITELIGEE 63 Query: 95 VIDR 98 D Sbjct: 64 KEDN 67 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K ++ ++ K +G+ +SN G++ P + KI V + + ++ Sbjct: 5 IKEFMNERNITSAWLAKQVGISKVAVSNIVTGKSSPSLDNIIKIASVLNVSITELIGEEK 64 Query: 178 V 178 Sbjct: 65 E 65 >gi|269967853|ref|ZP_06181897.1| hypothetical protein VMC_33270 [Vibrio alginolyticus 40B] gi|269827558|gb|EEZ81848.1| hypothetical protein VMC_33270 [Vibrio alginolyticus 40B] Length = 112 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS----NYEQGRTIPEIKPARKIKQ 163 L + ARLK RK +SQ G +GM +S+ S YE+ R P++K + I Sbjct: 1 MLFNNPLPARLKHARKQANLSQKALGIRIGMDDSSASARMNQYERERHTPDVKTLKLIAD 60 Query: 164 VTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 L++ + DE+ ++ K + K+ Sbjct: 61 ELNVPLNYFFCEDEITAELAVNLHKLSNDDKQR 93 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYALYLRNEYEISFDW 89 R+K RK N +QK + I +S+ +N +E + ++ + +E + ++ Sbjct: 9 ARLKHARKQANLSQKALGIRIGMDDSSASARMNQYERERHTPDVKTLKLIADELNVPLNY 68 Query: 90 IYDGEVIDRRYEDVTNKKRLD 110 + + I +K D Sbjct: 69 FFCEDEITAELAVNLHKLSND 89 >gi|57233927|ref|YP_182049.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57224375|gb|AAW39432.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +L+ +R ++Q E LG+ T+ E G+ P ++ A KI + K ++ I+ Sbjct: 1 MQNKLRVLRAIHNLTQEELADKLGITRQTVIAIEWGKYSPSLELAFKIASLFKAPIEEIF 60 Query: 174 F 174 Sbjct: 61 T 61 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +R +N TQ+E+A V E G S S+ A + + ++ + I+ Sbjct: 3 NKLRVLRAIHNLTQEELADKLGITRQTVIAIEWGKYSPSLELAFKIASLFKAPIEEIFTY 62 Query: 94 EVI 96 Sbjct: 63 NTE 65 >gi|42525598|ref|NP_970696.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41815609|gb|AAS10577.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 191 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 29/56 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G++I+ +RK + + ++MA S ++ EN S SI + + ++++ Sbjct: 5 IGSKIRALRKVRSISLQQMAKDLGMSYSYLSGLENDKYSVSITNLQKIASYFKVNL 60 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +IG++++++RK + +S + K LGM S LS E + I +KI K +L Sbjct: 3 ISIGSKIRALRKVRSISLQQMAKDLGMSYSYLSGLENDKYSVSITNLQKIASYFKVNLVS 62 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + + K+ + ++ K P Sbjct: 63 FLTPNGPVPRVFRKKDLYSNANTYDNIAYKVITP 96 >gi|86133594|ref|ZP_01052176.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85820457|gb|EAQ41604.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R ++Q + K +G+ T+++ E+ R +P A K+ +V ++ + Sbjct: 1 MKNTLKVQRAILNLTQDDLAKQIGVSRQTINSIEKNRYVPSTVLALKLSKVFNITVNEFF 60 Query: 174 FGDEV 178 +E Sbjct: 61 TLEED 65 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R N TQ ++A +N E S AL L + I+ + + E Sbjct: 5 LKVQRAILNLTQDDLAKQIGVSRQTINSIEKNRYVPSTVLALKLSKVFNITVNEFFTLEE 64 Query: 96 ID 97 D Sbjct: 65 DD 66 >gi|75762322|ref|ZP_00742202.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218897473|ref|YP_002445884.1| DNA-binding protein [Bacillus cereus G9842] gi|228904512|ref|ZP_04068598.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74490185|gb|EAO53521.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218544400|gb|ACK96794.1| DNA-binding protein [Bacillus cereus G9842] gi|228855117|gb|EEM99690.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 184 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +VG +I RK T K +A A+ S ++ E G+ + S++ + I Sbjct: 5 NVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPL 61 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++ + RK G++ +L + S LS E+G T P ++ + I Sbjct: 1 MNNINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 L-FNFFLEDTSTEELVVRANQRKK 83 >gi|116621234|ref|YP_823390.1| XRE family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224396|gb|ABJ83105.1| transcriptional regulator, XRE family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 10/138 (7%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE 65 F ++S + T D+G +++ +R ++ S ++ E Sbjct: 16 FSTADMRSRDTESSEETIGRVLSAYDIGRKLRQLRLRKKIALVDLGRHTGLSASMLSQLE 75 Query: 66 NGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDP---------YAIGA 116 NG ++ + +++ + + + + V +RL Sbjct: 76 NGKLVPTLATLARISMVFDVGLEHFFGNRRGQKTFALVRAAERLRFPERADAPKPAYFFE 135 Query: 117 RLKSIRKDKGMSQIEFGK 134 L + KG+ Q + Sbjct: 136 CLAFAAQSKGL-QAYVAE 152 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + T + L Y IG +L+ +R K ++ ++ G+ G+ S LS E G+ +P Sbjct: 23 SRDTESSEETIGRVLSAYDIGRKLRQLRLRKKIALVDLGRHTGLSASMLSQLENGKLVPT 82 Query: 155 IKPARKIKQVTKKHLDWIY 173 + +I V L+ + Sbjct: 83 LATLARISMVFDVGLEHFF 101 >gi|47565769|ref|ZP_00236809.1| transcriptional regulator, merR family [Bacillus cereus G9241] gi|47557405|gb|EAL15733.1| transcriptional regulator, merR family [Bacillus cereus G9241] Length = 186 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 23/179 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 +G + RK NN T +E A A S ++ E G + + + + Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPFLSVLELIAKALNVPLFTLF 65 Query: 88 ------DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 D + + ++ N + +K+ + M + Sbjct: 66 INEIDTDSLISKKKDRKKVYRENNDHIVYDVLTPDFMKARIEMLMMDLNKQAN------- 118 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLD----WIYFGDEVIVPKSIKRAKGNQSSKKS 196 T N+ EI K +V L+ ++ GD V +P ++K N+S + + Sbjct: 119 TTENHYSHEDKEEIAVVMK-GEVY-VELEGKEYFLEEGDVVRIPPNVKHRFLNKSDESN 175 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF G+ S +S E+G P + I + L ++ +E+ Sbjct: 13 YRKKNNMTIREFADYAGISTSLISQIERGHANPFLSVLELIAKALNVPLFTLFI-NEIDT 71 Query: 181 PKSIKRAKGNQSSKKSKKD 199 I + K + + D Sbjct: 72 DSLISKKKDRKKVYRENND 90 >gi|319948673|ref|ZP_08022795.1| Xre family DNA-binding protein [Dietzia cinnamea P4] gi|319437655|gb|EFV92653.1| Xre family DNA-binding protein [Dietzia cinnamea P4] Length = 479 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G R++ +R+ N TQ A S +N E + R + + Y + Sbjct: 1 MGARLRRLREENGLTQAAFAQSLGLSSSYLNQLEKDTRPVTSRVLVKISEVYGVD 55 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 36/74 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +GARL+ +R++ G++Q F + LG+ +S L+ E+ + KI +V + Sbjct: 1 MGARLRRLREENGLTQAAFAQSLGLSSSYLNQLEKDTRPVTSRVLVKISEVYGVDSTFFA 60 Query: 174 FGDEVIVPKSIKRA 187 + + ++ A Sbjct: 61 SDSDTRLIAAVTEA 74 >gi|291535512|emb|CBL08624.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 119 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 N D IG +K R KGM++ + +++ L E P ++ ++ Sbjct: 5 NNDFDFDFTPIGQAIKKARTAKGMTREQLARIVDYDPRHLQAIENEGQKPSLELLIQLVT 64 Query: 164 VTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +D F D + S++R + K + K+ Sbjct: 65 MFGVSVDEYIFPDNEVKRSSVRRRLDAELDKLNDKE 100 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 1/86 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD-WI 90 +G IK R A T++++A + + EN S+ + L + +S D +I Sbjct: 15 IGQAIKKARTAKGMTREQLARIVDYDPRHLQAIENEGQKPSLELLIQLVTMFGVSVDEYI 74 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + R LD Sbjct: 75 FPDNEVKRSSVRRRLDAELDKLNDKE 100 >gi|225874839|ref|YP_002756298.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793286|gb|ACO33376.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 148 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 2/98 (2%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + R +G I+ R +Q ++ L ++ ENG S+ + Sbjct: 28 QARAKMMKIGMTIRGYRLQKGLSQGDIEKRTGLLRCYLSRVENGHTVPSLDTLAKIAGAL 87 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + + + R D +++ Sbjct: 88 DLPLAQFFAEDSLGRELNTQKLTD--DELRFLTQIRRY 123 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++ R KG+SQ + K G+ LS E G T+P + KI L Sbjct: 33 MMKIGMTIRGYRLQKGLSQGDIEKRTGLLRCYLSRVENGHTVPSLDTLAKIAGALDLPLA 92 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + D + + ++ ++ ++ + SSN Sbjct: 93 QFFAEDSLGRELNTQKLTDDELRFLTQIRRYSSN 126 >gi|254454592|ref|ZP_05068029.1| DNA-binding protein [Octadecabacter antarcticus 238] gi|198268998|gb|EDY93268.1| DNA-binding protein [Octadecabacter antarcticus 238] Length = 189 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +RKA T + + ++ E M SI ++ + ++S ++ Sbjct: 12 LGADIRALRKARGLTLSGLGKTLGRSVGWLSQVERDMSEPSITDLRHIASVLDVSVSSLF 71 Query: 92 DGEVID 97 + Sbjct: 72 RSAAPE 77 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A ++++RK +G++ GK LG LS E+ + P I R I V + ++ Sbjct: 14 ADIRALRKARGLTLSGLGKTLGRSVGWLSQVERDMSEPSITDLRHIASVLDVSVSSLF 71 >gi|153940779|ref|YP_001389988.1| cupin domain-containing protein [Clostridium botulinum F str. Langeland] gi|152936675|gb|ABS42173.1| cupin domain protein [Clostridium botulinum F str. Langeland] gi|295318072|gb|ADF98449.1| cupin domain protein [Clostridium botulinum F str. 230613] Length = 183 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N + ++A +N + ++ E G + +I + N ++ + + Sbjct: 7 IAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLL 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + D +N + Sbjct: 67 EQKEHDTCIIKKSNLEPQ 84 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK++R ++ +S + +L + LS E+G T P I KI K + Sbjct: 9 ENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY-TLLLE 67 Query: 176 DEVIVPKSIKRAKGNQSSKKS 196 + IK++ + Sbjct: 68 QKEHDTCIIKKSNLEPQISEE 88 >gi|58696656|ref|ZP_00372210.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58699194|ref|ZP_00374006.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225630362|ref|YP_002727153.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630756|ref|YP_002727547.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|58534290|gb|EAL58477.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58537180|gb|EAL60282.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|225592343|gb|ACN95362.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592737|gb|ACN95756.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 302 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 1/97 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG ++K R TQK++A + +E G SI + IS + Sbjct: 12 KVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITDL 71 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 E + Y + +RK + Sbjct: 72 IPISKSCLEDEGEEILNLVREYKKIND-QELRKMFCL 107 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 28/86 (32%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK+ R TQK++ + ++ +E G + + + I+ + Sbjct: 163 QIGKKIKEWRLVREYTQKDLVEKMSTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDL 222 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 E + E K Sbjct: 223 LIEEGSKVKNELPDLIKEYKEIESQE 248 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G +LKS R ++G +Q + + LG+ + YE+G I+ I + + Sbjct: 11 YKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITD 70 Query: 172 IY 173 + Sbjct: 71 LI 72 Score = 42.6 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 +S D I + E V K IG ++K R + +Q + + + + Sbjct: 135 GVSVD-IVAKTIGLSADECVEEKGGSIYCQIGKKIKEWRLVREYTQKDLVEKMSTTRDEI 193 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD----EVIVPKSIKRAKGNQSSK 194 SNYEQGRT + ++ + ++ + + + +P IK K +S + Sbjct: 194 SNYEQGRTAVPLDKLYEMAEALSINITDLLIEEGSKVKNELPDLIKEYKEIESQE 248 >gi|323483984|ref|ZP_08089357.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum WAL-14163] gi|323402700|gb|EGA95025.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum WAL-14163] Length = 183 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V I+ +R+ N + E++ + +S + E G + +I + N ++ FD + Sbjct: 8 VAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDAL 66 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ +R++ +S E +L G+ S L+ E+G P I KI K D + Sbjct: 10 KNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDAL 66 >gi|295090185|emb|CBK76292.1| Predicted transcriptional regulators [Clostridium cf. saccharolyticum K10] Length = 118 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 4/112 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G ++K RK TQ+E++ ++ + E G + S L +S D Sbjct: 7 KELGLKLKATRKEKGLTQQELSDISHVSTKQIANIERGKMNPSYLILKALAKVVPLSLDS 66 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 + E+ + NK ++ ++ +Q +L + Sbjct: 67 LLAPEISPDD--EGANKMKILYMNCPPEMRE--TLLHQTQGLSEELTELSRK 114 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK+ RK+KG++Q E + + ++N E+G+ P + + +V LD + + Sbjct: 13 LKATRKEKGLTQQELSDISHVSTKQIANIERGKMNPSYLILKALAKVVPLSLDSLLAPEI 72 Query: 178 VIVPKSIKRAK 188 + + K Sbjct: 73 SPDDEGANKMK 83 >gi|239622416|ref|ZP_04665447.1| transcriptional regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514413|gb|EEQ54280.1| transcriptional regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 78 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R +GM Q + L+ + T+ EQG+ P ++ A + +V ++ ++ Sbjct: 8 MKTSLKLHRLQRGMKQSDLADLVNVRRETIGRLEQGQYCPSLRLAMDLARVFGTTVEDLF 67 Query: 174 FGDEVIVPKS 183 D+ +S Sbjct: 68 SFDDEYKSES 77 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K R Q ++A N + E G S+R A+ L + + + ++ Sbjct: 12 LKLHRLQRGMKQSDLADLVNVRRETIGRLEQGQYCPSLRLAMDLARVFGTTVEDLF 67 >gi|228942395|ref|ZP_04104933.1| Transcription regulator, probable-related protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981964|ref|ZP_04142258.1| Transcription regulator, probable-related protein [Bacillus thuringiensis Bt407] gi|228777725|gb|EEM25998.1| Transcription regulator, probable-related protein [Bacillus thuringiensis Bt407] gi|228817236|gb|EEM63323.1| Transcription regulator, probable-related protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 68 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K RK+ +Q E+A N +NL EN + S+ + L + + ++ Sbjct: 7 NNVKQYRKSEGLSQLELAKKINVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 64 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K RK +G+SQ+E K + + T++ E + P + ++ + K L+ ++ Sbjct: 5 YLNNVKQYRKSEGLSQLELAKKINVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 64 Query: 174 FG 175 + Sbjct: 65 WE 66 >gi|229100661|ref|ZP_04231509.1| hypothetical protein bcere0020_58310 [Bacillus cereus Rock3-29] gi|229107528|ref|ZP_04237280.1| hypothetical protein bcere0019_58820 [Bacillus cereus Rock3-28] gi|229119263|ref|ZP_04248568.1| hypothetical protein bcere0017_54990 [Bacillus cereus Rock1-3] gi|228664188|gb|EEL19724.1| hypothetical protein bcere0017_54990 [Bacillus cereus Rock1-3] gi|228675920|gb|EEL31013.1| hypothetical protein bcere0019_58820 [Bacillus cereus Rock3-28] gi|228682754|gb|EEL36784.1| hypothetical protein bcere0020_58310 [Bacillus cereus Rock3-29] Length = 64 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I ++R NN +Q +A + +N EN S+ A L + D ++ Sbjct: 3 NQIYELRTENNISQGALADKCSVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLFLY 62 Query: 94 E 94 + Sbjct: 63 K 63 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 1 MKNQIYELRTENNISQGALADKCSVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|254416780|ref|ZP_05030530.1| hypothetical protein MC7420_100 [Microcoleus chthonoplastes PCC 7420] gi|254417544|ref|ZP_05031282.1| hypothetical protein MC7420_5296 [Microcoleus chthonoplastes PCC 7420] gi|196175642|gb|EDX70668.1| hypothetical protein MC7420_5296 [Microcoleus chthonoplastes PCC 7420] gi|196176520|gb|EDX71534.1| hypothetical protein MC7420_100 [Microcoleus chthonoplastes PCC 7420] Length = 77 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST--SIRYALYLRNEYEISFDWI 90 G ++ +RK TQK++A + V+ +E G +IR L + + D + Sbjct: 4 GHKLMKLRKRLGLTQKQVADAVGVTDQTVSNWEAGRFEPRLTIRQTQALCSILQCPLDEL 63 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP--EIKPARKIKQVTKKHL 169 + G +L +RK G++Q + +G+ + T+SN+E GR P I+ + + + + L Sbjct: 1 MSSGHKLMKLRKRLGLTQKQVADAVGVTDQTVSNWEAGRFEPRLTIRQTQALCSILQCPL 60 Query: 170 DWIYFGDEVIVPKSIKR 186 D + +E S + Sbjct: 61 DELPSFNEAQESDSKRE 77 >gi|189405314|ref|ZP_02814730.2| regulatory protein [Escherichia coli O157:H7 str. EC869] gi|261223695|ref|ZP_05937976.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. FRIK2000] gi|261255895|ref|ZP_05948428.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. FRIK966] gi|300817229|ref|ZP_07097447.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|331680492|ref|ZP_08381151.1| regulatory protein [Escherichia coli H591] gi|331681931|ref|ZP_08382564.1| regulatory protein [Escherichia coli H299] gi|189370740|gb|EDU89156.1| regulatory protein [Escherichia coli O157:H7 str. EC869] gi|300530205|gb|EFK51267.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|309700480|emb|CBI99774.1| putative cI regulatory protein [Escherichia coli ETEC H10407] gi|331071955|gb|EGI43291.1| regulatory protein [Escherichia coli H591] gi|331081133|gb|EGI52298.1| regulatory protein [Escherichia coli H299] Length = 230 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 33/92 (35%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 ++G R++ +R+A N ++A + ++ E G + + + + Sbjct: 2 NIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIAD 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ +N + + R++ + Sbjct: 62 LFTSAHKSNTVYKNSNNEDVAQVKDVFRIEML 93 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK-PARKIKQVTKKHLD 170 IG R++ +R+ K M + + +G+ + +S E G+ + I + + Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIA 60 Query: 171 WIYF 174 ++ Sbjct: 61 DLFT 64 >gi|169344358|ref|ZP_02865331.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297483|gb|EDS79590.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 105 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 31 DVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +GT ++ IRKA TQ+++A S ++ E+ + S+ + L +++ + Sbjct: 2 KIGTNLQRIRKAKDPKITQQDLAKATGLSRSYLSDVEHNRYNPSLDTTIALAEALDVTVN 61 Query: 89 WIYD 92 + Sbjct: 62 DLVY 65 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Query: 112 YAIGARLKSIRKDK--GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 IG L+ IRK K ++Q + K G+ S LS+ E R P + + + + Sbjct: 1 MKIGTNLQRIRKAKDPKITQQDLAKATGLSRSYLSDVEHNRYNPSLDTTIALAEALDVTV 60 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + + + K + + + D + Sbjct: 61 NDLVYTNVHTNSKLVINDNSETININNLNDNQ 92 >gi|163733431|ref|ZP_02140874.1| transcriptional regulator, Cro/CI family, putative [Roseobacter litoralis Och 149] gi|161393219|gb|EDQ17545.1| transcriptional regulator, Cro/CI family, putative [Roseobacter litoralis Och 149] Length = 125 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 25/136 (18%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E G S + + ++ + + Sbjct: 9 VGKRIRQRRWLVGMTQQKLAECVGIKFQQIQKYETGANRVSASRLWDIADALDVDVAFFF 68 Query: 92 DG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 +G E + + + D + + + S + E Sbjct: 69 EGLREEAGKDAPEPASSVPADMMGDK------------------EAMDLVRSYYAIPENQ 110 Query: 150 RTIPEIKPARKIKQVT 165 R ++ +V Sbjct: 111 RRR-----LFELARVL 121 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L +G R++ R GM+Q + + +G+ + YE G I Sbjct: 1 MAHLVDVHVGKRIRQRRWLVGMTQQKLAECVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 166 KKHLDWIYFG 175 + + + G Sbjct: 61 DVDVAFFFEG 70 >gi|160940976|ref|ZP_02088315.1| hypothetical protein CLOBOL_05870 [Clostridium bolteae ATCC BAA-613] gi|158436066|gb|EDP13833.1| hypothetical protein CLOBOL_05870 [Clostridium bolteae ATCC BAA-613] Length = 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RI+++RK N TQ+E+A+ + ENG + S++ A + + S + I+ E Sbjct: 4 RIQELRKQNKVTQEELALALGVTRQTIISLENGKYNASLQLAFKISRFFGKSIEDIFLFE 63 Query: 95 VID 97 + Sbjct: 64 EEE 66 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +RK ++Q E LG+ T+ + E G+ ++ A KI + K ++ I+ Sbjct: 1 MKTRIQELRKQNKVTQEELALALGVTRQTIISLENGKYNASLQLAFKISRFFGKSIEDIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 LFEEE 65 >gi|326381819|ref|ZP_08203512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199245|gb|EGD56426.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 125 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 8/115 (6%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-------GMCSTSIRYA 76 E Y G R+ +RKA +Q+E+A +AV+ E G+ + Sbjct: 10 EWDTYAFAFGHRLVTVRKARGLSQEELAERCGLHRNAVSNLERATSNSASGIADPLLSTV 69 Query: 77 LYLRNEYEISFDWIYDGEVIDRR-YEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 L E+ ++ G + L + D G Q Sbjct: 70 YRLARALEVPPTYLMPGADSRIGLRAAEQETNQALSEVEAELLAMLAADFGAHQE 124 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-------PEIKPARKIKQV 164 +A G RL ++RK +G+SQ E + G+ + +SN E+ + P + ++ + Sbjct: 16 FAFGHRLVTVRKARGLSQEELAERCGLHRNAVSNLERATSNSASGIADPLLSTVYRLARA 75 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + ++ G + + + NQ Sbjct: 76 LEVPPTYLMPGADSRIGLRAAEQETNQ 102 >gi|323139594|ref|ZP_08074638.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] gi|322395144|gb|EFX97701.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] Length = 205 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 32/75 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++ +RKA N + E++ + +S ++ E + ++ L ++S + + Sbjct: 22 QLGATVQRLRKAYNLSLSELSQQSGVAKSIISQIERNETNPTLATIWRLAQALDVSIERV 81 Query: 91 YDGEVIDRRYEDVTN 105 + E VT Sbjct: 82 LQTTEDEPFLEKVTK 96 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 A ++ +RK +S E + G+ S +S E+ T P + ++ Q ++ + Sbjct: 25 ATVQRLRKAYNLSLSELSQQSGVAKSIISQIERNETNPTLATIWRLAQALDVSIERVLQT 84 Query: 174 FGDEVIVPKSIK 185 DE + K K Sbjct: 85 TEDEPFLEKVTK 96 >gi|302524912|ref|ZP_07277254.1| DNA-binding protein [Streptomyces sp. AA4] gi|302433807|gb|EFL05623.1| DNA-binding protein [Streptomyces sp. AA4] Length = 474 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 45/132 (34%), Gaps = 26/132 (19%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R++ +R++ + +Q ++A S +N E+ ++ L + + + + + Sbjct: 7 GARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGVDTE--FF 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 + + LD + +G+ +T E + Sbjct: 65 ANNDTSQLVADVKEALLD-----------------------EAVGVEATTSELNELASNL 101 Query: 153 PEI-KPARKIKQ 163 P I + K+ + Sbjct: 102 PSIAQALVKLHR 113 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D GARL+ +R+ + MSQ + ++L + S L+ E + +I Q Sbjct: 1 MDKTFAGARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 ++ D + +K A Sbjct: 61 TEFFANNDTSQLVADVKEA 79 >gi|289578605|ref|YP_003477232.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528318|gb|ADD02670.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 76 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK IRK M+ +E K +G+ +S + E G P +K A+KI + K LD I+ Sbjct: 1 MKNKLKEIRKSLNMTGVELAKKVGVSHSLIYMIEGGYRNPSMKLAKKIAKTLGKSLDEIF 60 Query: 174 FGD 176 F D Sbjct: 61 FDD 63 Score = 61.5 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+IRK+ N T E+A S + + E G + S++ A + S D I+ Sbjct: 3 NKLKEIRKSLNMTGVELAKKVGVSHSLIYMIEGGYRNPSMKLAKKIAKTLGKSLDEIFFD 62 Query: 94 E 94 + Sbjct: 63 D 63 >gi|148256753|ref|YP_001241338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408926|gb|ABQ37432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 271 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG ++ R+ + +Q ++A+ A ++ E G + S L L ++ Sbjct: 17 VGEHLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVLKLAERLDVPL 72 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R+ + +SQ++ + LS E GR P K+ + L Sbjct: 19 EHLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVLKLAERLDVPL 72 >gi|146341868|ref|YP_001206916.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194674|emb|CAL78699.1| putative transcriptional regulatory protein, XRE family [Bradyrhizobium sp. ORS278] Length = 271 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG ++ R+ + +Q ++A+ A ++ E G + S L L ++ Sbjct: 17 VGEHLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVLKLAERLDVPL 72 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R+ + +SQ++ + LS E GR P K+ + L Sbjct: 19 EHLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVLKLAERLDVPL 72 >gi|322806874|emb|CBZ04444.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 147 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 1/95 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 G IK IR+ E++ + S ++ E G + +I L + E++ D + Sbjct: 2 FGKNIKRIRELKGLGVNELSRLSGVNASYISAMERGEKENPTITTLKKLADTLEVTVDEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + I + K D + L + K Sbjct: 62 IKEDSITHEKLKEWDNKYTDQIKEESTLYETGEFK 96 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLDW 171 G +K IR+ KG+ E +L G+ S +S E+ + P I +K+ + +D Sbjct: 1 MFGKNIKRIRELKGLGVNELSRLSGVNASYISAMERGEKENPTITTLKKLADTLEVTVDE 60 Query: 172 IYFGDEVIVPKSIK 185 + D + K + Sbjct: 61 LIKEDSITHEKLKE 74 >gi|295100273|emb|CBK97818.1| Predicted transcriptional regulator with C-terminal CBS domains [Faecalibacterium prausnitzii L2-6] Length = 184 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 18/146 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K R+ +Q+E+A +S++N E G + + + E + +I Sbjct: 3 IGQRVKIRREELGMSQEELATKVGYKSKSSINKIELGFRVLTQSKIKVIADALETTPSYI 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL--LGMPNSTLSNYEQ 148 + + +++ + K D ++ + L G+ + E Sbjct: 63 MGWD--EESHQNEWSSKFRDSVMQI-----------LNNADPADLKAAGISVQEIEE-EL 108 Query: 149 GRTIP-EIKPARKIKQVTKKHLDWIY 173 + P + A I + LD + Sbjct: 109 DGSEPISLAAACSIADQLGESLDSLL 134 Score = 41.5 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG R+K R++ GMSQ E +G S+++ E G + + I + Sbjct: 1 MTIGQRVKIRREELGMSQEELATKVGYKSKSSINKIELGFRVLTQSKIKVIADALETTPS 60 Query: 171 WIYFGDEV 178 +I DE Sbjct: 61 YIMGWDEE 68 >gi|284034787|ref|YP_003384718.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283814080|gb|ADB35919.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 119 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 23/70 (32%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G + +R+ T +E+A A ++ E G S + ++ Sbjct: 3 LRQVIGNVFRRLRRERGITLRELAELAQVSVPYLSEIERGRKEPSSEILAAICRALDLEL 62 Query: 88 DWIYDGEVID 97 + D Sbjct: 63 SDLLAEVQFD 72 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L IG + +R+++G++ E +L + LS E+GR P + I + Sbjct: 1 MLLRQVIGNVFRRLRRERGITLRELAELAQVSVPYLSEIERGRKEPSSEILAAICRALDL 60 Query: 168 HLDWIY 173 L + Sbjct: 61 ELSDLL 66 >gi|220920176|ref|YP_002495477.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944782|gb|ACL55174.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 193 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 26/81 (32%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + R++ +R A T + +A S ++L E S + L Sbjct: 1 MDEPRSDLDARLAARLRGLRTAQGLTLEALAQRCGVSRSMISLVERAESSPTATVLERLS 60 Query: 81 NEYEISFDWIYDGEVIDRRYE 101 +S ++ E + Sbjct: 61 AGLGVSLAALFSPEHREDASP 81 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 29/76 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ARL+ +R +G++ + G+ S +S E+ + P ++ L ++ Sbjct: 14 ARLRGLRTAQGLTLEALAQRCGVSRSMISLVERAESSPTATVLERLSAGLGVSLAALFSP 73 Query: 176 DEVIVPKSIKRAKGNQ 191 + + R + Sbjct: 74 EHREDASPLSRRADQR 89 >gi|297200365|ref|ZP_06917762.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|197709485|gb|EDY53519.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 289 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV-------E 68 Query: 176 DEVIVPKSIKRAKGNQ 191 D+ +V ++ AK ++ Sbjct: 69 DQRVVESLMQMAKDSR 84 >gi|170742021|ref|YP_001770676.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196295|gb|ACA18242.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 183 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG R++ +R + +Q+ +A A + S ++L E+G + S+ + + I Sbjct: 5 EVGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIGLAEF 64 Query: 91 YDGEVIDRRY 100 + E Sbjct: 65 FSLEPARTEK 74 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +GARL+ +R G+SQ + G+ NST+S E G+T P + ++I Sbjct: 1 MTNDEVGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIG 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 L + + K+ A+ K + + Sbjct: 61 LAEFFSLEPARTEKAFYAAEDLVEIGKGRISYR 93 >gi|110679288|ref|YP_682295.1| Cro/CI family transcriptional regulator putative [Roseobacter denitrificans OCh 114] gi|109455404|gb|ABG31609.1| transcriptional regulator, Cro/CI family, putative [Roseobacter denitrificans OCh 114] Length = 125 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 25/136 (18%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E G S + + ++ + + Sbjct: 9 VGKRIRQRRWLVGMTQQKLAECVGIKFQQIQKYETGANRVSASRLWDIADALDVDVAFFF 68 Query: 92 DG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 +G E + + T+ D + + + S + E Sbjct: 69 EGLREEAGKDAPEPTSSVPADMMGDK------------------EAMDLVRSYYAIPENQ 110 Query: 150 RTIPEIKPARKIKQVT 165 R ++ +V Sbjct: 111 RRR-----LFELARVL 121 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L +G R++ R GM+Q + + +G+ + YE G I Sbjct: 1 MAHLVDVHVGKRIRQRRWLVGMTQQKLAECVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 166 KKHLDWIYFG 175 + + + G Sbjct: 61 DVDVAFFFEG 70 >gi|288227164|gb|ADC45065.1| putative transcriptional regulator (helix-turn-helix motif, XRE-like) [Cupriavidus metallidurans CH34] Length = 101 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG IK R +Q ++A A S +++ EN ++ + + + I Sbjct: 2 NVGQAIKLCRTRRGISQADLARQAECSVSYLSMLENNKRDPTLSTMTKIAHALHMPVGII 61 Query: 91 YD 92 + Sbjct: 62 FF 63 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +K R +G+SQ + + S LS E + P + KI + Sbjct: 1 MNVGQAIKLCRTRRGISQADLARQAECSVSYLSMLENNKRDPTLSTMTKIAHALHMPVGI 60 Query: 172 IYF 174 I+F Sbjct: 61 IFF 63 >gi|15612927|ref|NP_241230.1| transcriptional regulator [Bacillus halodurans C-125] gi|10172977|dbj|BAB04083.1| transcriptional regulator [Bacillus halodurans C-125] Length = 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K R + TQ+++A + L E G + S++ + + + D ++ Sbjct: 3 NNVKQTRMNMSMTQEQLARKVGVTRQTIGLIEKGEYNPSLQLCVAIAKNLHKTLDDLF 60 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K R + M+Q + + +G+ T+ E+G P ++ I + K LD ++ Sbjct: 1 MKNNVKQTRMNMSMTQEQLARKVGVTRQTIGLIEKGEYNPSLQLCVAIAKNLHKTLDDLF 60 Query: 174 FGDEV 178 + + Sbjct: 61 WEVDE 65 >gi|315222118|ref|ZP_07864027.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188744|gb|EFU22450.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 62 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 24/58 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +++ R + +Q E+A +N+ EN + ++ + L + + ++ Sbjct: 2 NHVREFRNSLGLSQLELAKKTGVSRQTINMIENNKYNPTLELCINLALALKTDLNTLF 59 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ R G+SQ+E K G+ T++ E + P ++ + K L+ +++ Sbjct: 1 MNHVREFRNSLGLSQLELAKKTGVSRQTINMIENNKYNPTLELCINLALALKTDLNTLFW 60 >gi|320105917|ref|YP_004181507.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924438|gb|ADV81513.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 116 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 24/64 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I+ R +Q ++ L ++ ENG S+ + + ++ Sbjct: 2 NIGGTIRGFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLKKIASALDLPLSQF 61 Query: 91 YDGE 94 + E Sbjct: 62 FAEE 65 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ R KGMSQ + K G+ LS E G T+P ++ +KI L + + Sbjct: 7 IRGFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLKKIASALDLPLSQFFAEEG 66 Query: 178 VIVPKSIKRAKGNQSSK 194 V+ S + + K Sbjct: 67 VVRDMSQQLSLSEDEIK 83 >gi|325674671|ref|ZP_08154358.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554257|gb|EGD23932.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 85 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 23/61 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R TQ E+A + + + E+G + + + ++ + Sbjct: 14 IGNEIRAARARRGITQNELADQSGISHTTIVRLESGKRTVDVVQLFAICKVLDVDPGVLL 73 Query: 92 D 92 D Sbjct: 74 D 74 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 D + AIG +++ R +G++Q E G+ ++T+ E G+ ++ Sbjct: 1 MDTDTTRDAIRNAIGNEIRAARARRGITQNELADQSGISHTTIVRLESGKRTVDVVQLFA 60 Query: 161 IKQVTKKHLDWIY 173 I +V + Sbjct: 61 ICKVLDVDPGVLL 73 >gi|255693490|ref|ZP_05417165.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|260620682|gb|EEX43553.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] Length = 181 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +++GT ++ R+ +Q+ +A S ++ E G + ++++ Sbjct: 73 FMENIGTMLRKQRELKGFSQEYVAGLVGVSTSVISKIETGKTKARFDVISNICKALDMNW 132 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 + E +RR ++ + +LK G Sbjct: 133 YDLLSPE--ERRSKEDCRINLNINVSSPQQLKEYLDILG 169 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 31/86 (36%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + + + IG L+ R+ KG SQ L+G+ S +S E G+T Sbjct: 61 KDNLRLEATNFIFMENIGTMLRKQRELKGFSQEYVAGLVGVSTSVISKIETGKTKARFDV 120 Query: 158 ARKIKQVTKKHLDWIYFGDEVIVPKS 183 I + + + +E + Sbjct: 121 ISNICKALDMNWYDLLSPEERRSKED 146 >gi|209546650|ref|YP_002278568.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537894|gb|ACI57828.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 276 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 28/57 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++G +++ R A K+Q ++++ + ++ E+G + L+L + ++ Sbjct: 13 ELGAQLRAWRGARGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLADALDVPL 69 Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 A+L++ R +G SQ++ G+ +S E GR+ P + L Sbjct: 16 AQLRAWRGARGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLADALDVPL 69 >gi|42520475|ref|NP_966390.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410214|gb|AAS14324.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 302 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 1/97 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG ++K R TQK++A + +E G SI + IS + Sbjct: 12 KVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITDL 71 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 E + Y + +RK + Sbjct: 72 IPISKSCLEDEGEEILNLVREYKKIND-QELRKMFCL 107 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 28/86 (32%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK+ R TQK++ + ++ +E G + + + I+ + Sbjct: 163 QIGKKIKEWRLVREYTQKDLVEKMSTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDL 222 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 E + E K Sbjct: 223 LIKEGSKVKNELPDLIKEYKEIESQE 248 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G +LKS R ++G +Q + + LG+ + YE+G I+ I + + Sbjct: 11 YKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITD 70 Query: 172 IY 173 + Sbjct: 71 LI 72 Score = 41.9 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 +S D I + E V K IG ++K R + +Q + + + + Sbjct: 135 GVSVD-IVAKTIGLSADECVEEKGGSIYCQIGKKIKEWRLVREYTQKDLVEKMSTTRDEI 193 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD----EVIVPKSIKRAKGNQSSK 194 SNYEQGRT + ++ + ++ + + + +P IK K +S + Sbjct: 194 SNYEQGRTAVPLDKLYEMAEALSINITDLLIKEGSKVKNELPDLIKEYKEIESQE 248 >gi|27375901|ref|NP_767430.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349039|dbj|BAC46055.1| bll0790 [Bradyrhizobium japonicum USDA 110] Length = 137 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 27/73 (36%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ K VG+R++ R +Q+++ + +E G + Sbjct: 1 MSKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIA 60 Query: 81 NEYEISFDWIYDG 93 ++ ++++G Sbjct: 61 EILQVPVSFLFEG 73 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D Y +R++ R GMSQ + G+ LG+ + YE+G ++I ++ Sbjct: 5 PNPVDKYVG-SRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIAEIL 63 Query: 166 KKHLDWIYFG 175 + + +++ G Sbjct: 64 QVPVSFLFEG 73 >gi|58699199|ref|ZP_00374010.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534286|gb|EAL58474.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 119 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 1/97 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG ++K R TQK++A + +E G SI + IS + Sbjct: 12 KVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITDL 71 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 E + Y + +RK + Sbjct: 72 IPISKSCLEDEGEEILNLVREYKKIND-QELRKMFCL 107 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y +G +LKS R ++G +Q + + LG+ + YE+G I+ I + + Sbjct: 11 YKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITD 70 Query: 172 IY 173 + Sbjct: 71 LI 72 >gi|302520148|ref|ZP_07272490.1| DNA-binding protein [Streptomyces sp. SPB78] gi|333026104|ref|ZP_08454168.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|302429043|gb|EFL00859.1| DNA-binding protein [Streptomyces sp. SPB78] gi|332745956|gb|EGJ76397.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 120 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R+A + +++A A ++ E G+ S L IS + +Y Sbjct: 9 LGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLY 68 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 LD +G L+ R+ +S + G+ N LS E+G P + +++ + + Sbjct: 4 LDVGGLGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRIS 63 Query: 169 LDWIY 173 + +Y Sbjct: 64 AETLY 68 >gi|296156060|ref|ZP_06838899.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893566|gb|EFG73345.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 190 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 30/87 (34%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P+ + + R++ +R N + ++A ++ + ++ EN S + L Sbjct: 6 PDDNAIDRRIAQRLRALRAERNWSLDDLARLSSVSRATLSRLENAAVSPTASVLGKLCVA 65 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRL 109 Y + + D + L Sbjct: 66 YGLPISRLMHMVEEDFAPHVPRAAQPL 92 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-F 174 RL+++R ++ S + +L + +TLS E P K+ + + Sbjct: 17 QRLRALRAERNWSLDDLARLSSVSRATLSRLENAAVSPTASVLGKLCVAYGLPISRLMHM 76 Query: 175 GDEVIVPKSIKRAK 188 +E P + A+ Sbjct: 77 VEEDFAPHVPRAAQ 90 >gi|268609766|ref|ZP_06143493.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 136 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K++R+ KEM+ S ++ +ENG + A+ L + Y ++ D+I EV Sbjct: 5 LKELRQQKGCKHKEMSEALGVSISQLSDYENGRKKLGMAMAIKLADFYNVTLDYIMGREV 64 Query: 96 I 96 Sbjct: 65 K 65 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK +R+ KG E + LG+ S LS+YE GR + A K+ LD+I Sbjct: 1 MNEVLKELRQQKGCKHKEMSEALGVSISQLSDYENGRKKLGMAMAIKLADFYNVTLDYIM 60 Query: 174 FGD 176 + Sbjct: 61 GRE 63 >gi|229069943|ref|ZP_04203222.1| hypothetical protein bcere0025_21430 [Bacillus cereus F65185] gi|228713189|gb|EEL65085.1| hypothetical protein bcere0025_21430 [Bacillus cereus F65185] Length = 204 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 20 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKVILRKDIQAL 104 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 88 Query: 176 DEVIVPKSIKR 186 + +++ Sbjct: 89 PQPDTKVILRK 99 >gi|218674449|ref|ZP_03524118.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 174 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + TS + E + + + + VG +I+ R +N + ++ G V +E+ Sbjct: 18 VRTSRPAQAEQSNVARELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYES 77 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 G S L N +I ++G + +D R+ Sbjct: 78 GKNRVSASMLYELANCLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRR 134 Score = 41.5 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ R +S + G +G+ + YE G+ ++ K + + G Sbjct: 45 QQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEG 104 >gi|188491927|ref|ZP_02999197.1| repressor protein C2 [Escherichia coli 53638] gi|194434099|ref|ZP_03066368.1| repressor protein C2 [Shigella dysenteriae 1012] gi|188487126|gb|EDU62229.1| repressor protein C2 [Escherichia coli 53638] gi|194417643|gb|EDX33743.1| repressor protein C2 [Shigella dysenteriae 1012] gi|332096959|gb|EGJ01947.1| repressor protein C2 [Shigella dysenteriae 155-74] Length = 218 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISF 87 K +G R+ + R+ TQ +A A A++ E G S + + + S Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 Query: 88 DWIYDGEVIDRRYEDVTN 105 W+ +G+ + +E+ Sbjct: 61 QWLQNGDEKGKYWENNVK 78 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHL 169 ++G RL + R+ G++Q K G+ +S EQG T K+ + Sbjct: 1 MKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 Query: 170 DWIYFGDE 177 W+ GDE Sbjct: 61 QWLQNGDE 68 >gi|154503727|ref|ZP_02040787.1| hypothetical protein RUMGNA_01551 [Ruminococcus gnavus ATCC 29149] gi|153795827|gb|EDN78247.1| hypothetical protein RUMGNA_01551 [Ruminococcus gnavus ATCC 29149] Length = 387 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RI+D+RK TQ+++A N +AV+ +E I L +S D + Sbjct: 27 KIGKRIQDLRKQKGLTQEQVAAALNISAAAVSKWETDTTYPDITILNPLARLLGVSVDVL 86 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 D + E + ++ D Sbjct: 87 LDFQEQMTEEECMKRMEKADTLFSTRN 113 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK KG++Q + L + + +S +E T P+I + ++ +D + Sbjct: 30 KRIQDLRKQKGLTQEQVAAALNISAAAVSKWETDTTYPDITILNPLARLLGVSVDVLLDF 89 Query: 176 DEVIVPKS 183 E + + Sbjct: 90 QEQMTEEE 97 >gi|88607013|ref|YP_505749.1| DNA-binding protein [Anaplasma phagocytophilum HZ] gi|35057062|gb|AAN15209.1| putative transcriptional regulator [Anaplasma phagocytophilum] gi|88598076|gb|ABD43546.1| DNA-binding protein [Anaplasma phagocytophilum HZ] Length = 183 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKD--VGTRIKDIRKANNKTQKEMAIGANQLESAVNL 63 F+ + ++ + I + + + D VG IK R +Q ++A V Sbjct: 2 FMTSQAQNQNSIPITIEGKAKPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQK 61 Query: 64 FENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPY 112 +E G I L I + + D R + Sbjct: 62 YEKGTNRIVISRLYELARVLGIEINDLMSKLQNDIRSITEGTDISITCL 110 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K R KGMSQ + LG+ + YE+G I ++ +V ++ + Sbjct: 34 IKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEINDLM 89 >gi|60594530|pdb|1Y9Q|A Chain A, Crystal Structure Of Hth_3 Family Transcriptional Regulator From Vibrio Cholerae Length = 192 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K++RK+ + A ++ + E G S +I + + E SF Sbjct: 8 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAXLGQIERGESSPTIATLWKIASGLEASF 67 Query: 88 DWIYDGEVI 96 + + Sbjct: 68 SAFFANDPQ 76 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +LK++RK +G+S +L G+ + L E+G + P I KI + + Sbjct: 14 NQLKNLRKSRGLSLDATAQLTGVSKAXLGQIERGESSPTIATLWKIASGLEASFSAFFAN 73 Query: 176 DEVIVPKS 183 D ++ Sbjct: 74 DPQLLSSE 81 >gi|332976056|gb|EGK12926.1| DNA-binding protein [Desmospora sp. 8437] Length = 179 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 30/81 (37%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++V I+ +R++ T K+++ S ++ E G S +I + + + + Sbjct: 1 MEEVCNEIRRLRQSRGYTLKDLSERTELSVSFLSQVERGTSSLAITSLKKIADAFGVPIR 60 Query: 89 WIYDGEVIDRRYEDVTNKKRL 109 + E +K Sbjct: 61 QFFLAENNFNYMLKKEEQKPF 81 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R+ +G + + + + S LS E+G + I +KI + + Sbjct: 6 NEIRRLRQSRGYTLKDLSERTELSVSFLSQVERGTSSLAITSLKKIADAFGVPIRQFFLA 65 Query: 176 D 176 + Sbjct: 66 E 66 >gi|329728856|gb|EGG65277.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 62 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK++R+ N TQ+E+A + + ++ E+ S S+ L + + Sbjct: 2 NIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEF 61 Query: 91 Y 91 + Sbjct: 62 F 62 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R+ K ++Q E + + +S E P ++ I +V Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 172 IY 173 + Sbjct: 61 FF 62 >gi|331696794|ref|YP_004333033.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326951483|gb|AEA25180.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 152 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 9/119 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R+ N + +EMA + + ++ E G+ S++ + + ++S + + Sbjct: 25 LGDFIRAQRQLANLSLREMASLTSVSNAYLSQVERGLHQPSLKVLRSIADALQLSTEQLL 84 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLK---------SIRKDKGMSQIEFGKLLGMPNS 141 P +IR D +++ + LLG+ S Sbjct: 85 SQAGWSTAEPAGPAAAGPGPQPAPGAAATSAPASTEDAIRADARLTEDQKAALLGVLRS 143 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G +++ R+ +S E L + N+ LS E+G P +K R I + + Sbjct: 23 NALGDFIRAQRQLANLSLREMASLTSVSNAYLSQVERGLHQPSLKVLRSIADALQLSTEQ 82 Query: 172 IY 173 + Sbjct: 83 LL 84 >gi|317490219|ref|ZP_07948707.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] gi|316910713|gb|EFV32334.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R+ +N TQ+++A+ S + E G + +I + + ++ ++ Sbjct: 9 LGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLGQLF 68 Query: 92 DG 93 +G Sbjct: 69 EG 70 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R++ ++Q + + G+ S L+ E G I K+ L ++ G Sbjct: 11 QRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLGQLFEG 70 >gi|325674989|ref|ZP_08154676.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554575|gb|EGD24250.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 182 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 5/98 (5%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R+ T + +A +S ++ E G+ + SI AL + + ++ Sbjct: 5 LRSHRRRAGLTLEALAEDTGLTKSYLSKVERGISTPSIAVALKIARALDADVSQLFSDTP 64 Query: 96 IDRRYEDVTNKKRL-----DPYAIGARLKSIRKDKGMS 128 + + +R D A+ + + K M Sbjct: 65 DNSVMAIERHAERAQVDADDDSAVYDAIATRMIGKAMQ 102 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + A L+S R+ G++ + G+ S LS E+G + P I A KI + + ++ Sbjct: 1 MAALLRSHRRRAGLTLEALAEDTGLTKSYLSKVERGISTPSIAVALKIARALDADVSQLF 60 Query: 174 FGDEVIVPKSIKR 186 +I+R Sbjct: 61 SDTPDNSVMAIER 73 >gi|257867332|ref|ZP_05646985.1| predicted protein [Enterococcus casseliflavus EC30] gi|257801388|gb|EEV30318.1| predicted protein [Enterococcus casseliflavus EC30] Length = 147 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R K +R+ + KE+ + L+E G + L+ + Y +S D++ Sbjct: 80 RFKFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLLGQT 139 Query: 95 VIDRRY 100 RY Sbjct: 140 ERPERY 145 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 K +R+++G+S E + L + + YE G +P++ + +D++ Sbjct: 82 KFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLL 136 >gi|229181932|ref|ZP_04309236.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228601526|gb|EEK59043.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] Length = 127 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 5/97 (5%) Query: 32 VGTRIKDIRKANN-----KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 G ++K +R+ TQ +A + +EN + L + N + +S Sbjct: 7 FGKKLKCLREEKKKENVEWTQTYVANQLGIARTTYTAYENDTKQPPMETILKIANLFSVS 66 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 D++ ++ + L+ + K I++ Sbjct: 67 TDFLLGRVSDCKQTKSFDIDNILNDPELSLWFKDIKE 103 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 114 IGARLKSIRKDKG-----MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 G +LK +R++K +Q LG+ +T + YE P ++ KI + Sbjct: 7 FGKKLKCLREEKKKENVEWTQTYVANQLGIARTTYTAYENDTKQPPMETILKIANLFSVS 66 Query: 169 LDWIY 173 D++ Sbjct: 67 TDFLL 71 >gi|226309766|ref|YP_002769660.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226092714|dbj|BAH41156.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RI+ RK TQ+ ++ S V E G + + + + ++ +D + Sbjct: 5 QLGNRIRSFRKLKGYTQQSLSDKMGVSLSFVGSLERGTRTPTEPVLRKIASTLQVDYDEL 64 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G R++S RK KG +Q +G+ S + + E+G P RKI + Sbjct: 1 MGSNQLGNRIRSFRKLKGYTQQSLSDKMGVSLSFVGSLERGTRTPTEPVLRKIASTLQVD 60 Query: 169 LDWI 172 D + Sbjct: 61 YDEL 64 >gi|170017857|ref|YP_001728776.1| Cro/CI family transcriptional regulator [Leuconostoc citreum KM20] gi|169804714|gb|ACA83332.1| Transcriptional regulator, Cro/CI family [Leuconostoc citreum KM20] Length = 84 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ ++ RK++ +SQ + + T++ E + P + A K+ + + +D Sbjct: 15 LALHNYIRKRRKERHLSQDMLAQKANVTRQTINAIENAKYDPSLALAFKLATILETTVDQ 74 Query: 172 IYFGDEVIVP 181 ++ E Sbjct: 75 LFTKSEDEND 84 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I+ RK + +Q +A AN +N EN S+ A L E + D ++ Sbjct: 21 IRKRRKERHLSQDMLAQKANVTRQTINAIENAKYDPSLALAFKLATILETTVDQLFTKSE 80 Query: 96 IDRR 99 + Sbjct: 81 DEND 84 >gi|168210486|ref|ZP_02636111.1| immunity repressor protein [Clostridium perfringens B str. ATCC 3626] gi|170711430|gb|EDT23612.1| immunity repressor protein [Clostridium perfringens B str. ATCC 3626] Length = 199 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RIK R N TQ+++A N+ +S + +E+ + + L + I Sbjct: 1 METLGKRIKKYRILKNMTQQQLADKLNKSKSTIQKYESDSVNLNTDTLNILCDVLNIDLF 60 Query: 89 WIYDGEVIDRRYE 101 + GE + + Sbjct: 61 TLLYGEKTEEEFN 73 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K R K M+Q + L ST+ YE + V L + +G Sbjct: 6 KRIKKYRILKNMTQQQLADKLNKSKSTIQKYESDSVNLNTDTLNILCDVLNIDLFTLLYG 65 Query: 176 DEVIVPKSIKR 186 ++ + +R Sbjct: 66 EKTEEEFNFER 76 >gi|154503571|ref|ZP_02040631.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC 29149] gi|260589920|ref|ZP_05855833.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|153795671|gb|EDN78091.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC 29149] gi|260539727|gb|EEX20296.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 128 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWIYDGE 94 I+ RK +Q E++ + ++ E G+ + + L + + + D + E Sbjct: 12 IRKKRKELGISQSELSEKLGTSQQTISRIEKAGIENIPCNLLIKLADIFHVPIDILIYEE 71 Query: 95 VIDRRYEDVTN 105 + Sbjct: 72 QNNLFSSQGEE 82 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDW 171 ++ RK+ G+SQ E + LG T+S E+ K+ + +D Sbjct: 7 MKMNIIRKKRKELGISQSELSEKLGTSQQTISRIEKAGIENIPCNLLIKLADIFHVPIDI 66 Query: 172 IYFGDE 177 + + ++ Sbjct: 67 LIYEEQ 72 >gi|134046605|ref|YP_001098090.1| transcriptional regulator [Methanococcus maripaludis C5] gi|132664230|gb|ABO35876.1| transcriptional regulator [Methanococcus maripaludis C5] Length = 182 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 31/92 (33%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IRK + + ++ +S + E G + +I L + N + Sbjct: 1 MNDLNEVISKNLKIIRKRKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 +SF + E + + Sbjct: 61 VSFTSLLKNEKPEIDLIHFEELTPVFEGECHK 92 >gi|325002546|ref|ZP_08123658.1| Xre family DNA-binding protein [Pseudonocardia sp. P1] Length = 117 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 31/92 (33%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +G+ ++ R +T ++++ A ++ E G S + IS Sbjct: 3 LREAIGSGLRQARTERRRTLRDISRAARVSLGYLSEVERGRKEPSSELLAAICEALGISV 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + ++ E + + A L+ Sbjct: 63 PDLLTSVAVEMAGELRRDDVLVPIGQRHAELR 94 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L AIG+ L+ R ++ + + + + LS E+GR P + I + Sbjct: 1 MLLREAIGSGLRQARTERRRTLRDISRAARVSLGYLSEVERGRKEPSSELLAAICEALGI 60 Query: 168 HLDWIYF 174 + + Sbjct: 61 SVPDLLT 67 >gi|322805033|emb|CBZ02593.1| putative transcriptional regulatory protein [Clostridium botulinum H04402 065] Length = 182 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N + +++ + + ++ E G + +I + N ++++ + Sbjct: 7 ISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKLI 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 D + D + K+ Sbjct: 67 DSPMEDAVVIHKVDTKKQ 84 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 A LK +R D+ +S + +L G+ LS E+G + P I KI + + Sbjct: 9 ANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKLIDS 68 Query: 174 -FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D V++ K + + ++ ++NP Sbjct: 69 PMEDAVVIHKVDTKKQSENTNSFISYCYYTTNP 101 >gi|302383125|ref|YP_003818948.1| hypothetical protein Bresu_2014 [Brevundimonas subvibrioides ATCC 15264] gi|302193753|gb|ADL01325.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 130 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 24/72 (33%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 E +Q VG ++ R +Q ++ V +E G S L Sbjct: 7 AEERQQLDVHVGRQLIAARTLMGLSQSDVGRLVGVTFQQVQKYERGTNRISASVLWTLAE 66 Query: 82 EYEISFDWIYDG 93 + + + ++G Sbjct: 67 KLNLPVTYFFEG 78 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 +++LD + + + R G+SQ + G+L+G+ + YE+G + + Sbjct: 8 EERQQLDVHVGRQLI-AARTLMGLSQSDVGRLVGVTFQQVQKYERGTNRISASVLWTLAE 66 Query: 164 VTKKHLDWIYFG 175 + + + G Sbjct: 67 KLNLPVTYFFEG 78 >gi|262404323|ref|ZP_06080878.1| transcriptional regulator YidN, Cro/CI family [Vibrio sp. RC586] gi|262349355|gb|EEY98493.1| transcriptional regulator YidN, Cro/CI family [Vibrio sp. RC586] Length = 181 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + ++K +RK+ + A ++ + E G S +I + + E SF Sbjct: 6 FKSQIANQLKVLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 65 Query: 88 DWIYDGEVI 96 + + Sbjct: 66 SAFFANDPQ 74 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +LK +RK KG+S +L G+ + L E+G + P I KI + Sbjct: 5 MFKSQIANQLKVLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 64 Query: 169 LDWIYFGDEVIVPKS 183 + D ++ Sbjct: 65 FSAFFANDPQLLSSE 79 >gi|229030146|ref|ZP_04186208.1| hypothetical protein bcere0028_22270 [Bacillus cereus AH1271] gi|228731204|gb|EEL82124.1| hypothetical protein bcere0028_22270 [Bacillus cereus AH1271] Length = 204 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 20 MEEIQLILAKNLKTIREKEKMSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKIVLRNDVQVL 104 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + MS + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKTIREKEKMSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 88 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 89 PQPDTKIVLRN 99 >gi|229156016|ref|ZP_04284117.1| hypothetical protein bcere0010_22060 [Bacillus cereus ATCC 4342] gi|228627623|gb|EEK84349.1| hypothetical protein bcere0010_22060 [Bacillus cereus ATCC 4342] Length = 204 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 20 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKVVLRNDVQVL 104 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 88 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 89 PQPDTKVVLRN 99 >gi|255283609|ref|ZP_05348164.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265871|gb|EET59076.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 111 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R+ TQ+++A + + E + + + + N +S D + Sbjct: 9 IGRRIQKCREDAKMTQEQLAEKVGISWNYLGAIERETKTPKLETLIKIVNALGVSADDVL 68 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + IG R++ R+D M+Q + + +G+ + L E+ P+++ KI D Sbjct: 6 MHGIGRRIQKCREDAKMTQEQLAEKVGISWNYLGAIERETKTPKLETLIKIVNALGVSAD 65 Query: 171 WIYFG 175 + Sbjct: 66 DVLLD 70 >gi|205374993|ref|ZP_03227784.1| XRE family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 292 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G I+++R+A Q+++ G +S ++ ENG+ + I + + Sbjct: 8 QIGQVIRELREALGLHQQDLCKGI-CTQSQLSKIENGISLPQSTTLYMISKRLGIDVNTL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 ++ R + + + Y KSIR+ Sbjct: 67 FEYTTTSRMDYVLEVEALIRGYVRKKDYKSIRE 99 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + D IG ++ +R+ G+ Q + K + S LS E G ++P+ I + Sbjct: 1 MNQPDFSQIGQVIRELREALGLHQQDLCKGI-CTQSQLSKIENGISLPQSTTLYMISKRL 59 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 ++ ++ + + KKD KS Sbjct: 60 GIDVNTLFEYTTTSRMDYVLEVEALIRGYVRKKDYKS 96 >gi|126699343|ref|YP_001088240.1| putative transcriptional regulator [Clostridium difficile 630] gi|255100870|ref|ZP_05329847.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306758|ref|ZP_05350929.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|115250780|emb|CAJ68604.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 181 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 15/176 (8%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I ++RK N + +++A A+ S ++ E G+ + S+ + + + Sbjct: 5 NLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLFTF 64 Query: 91 YDGEVIDRR-YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + EV + N+K++ + I +EF ++ + +T S ++ Sbjct: 65 FVSEVDKKNLIVRHDNRKKVILPGSKEVIYEILIPDSSGNLEFA-IMDLAPNTSSCVDRI 123 Query: 150 RTIPEIKPARKIKQVTK------KHLDW--IYFGDEVIVPKSIKRAKGNQSSKKSK 197 + +I V + D + GD V VP K N S+ +SK Sbjct: 124 THNGD-----EIAYVLEGEVKLFMDDDEFTLSKGDSVKVPLGTKHKWQNDSNSESK 174 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G ++ +RK + +S + KL + S LS E+G P + + I Sbjct: 1 MNDLNLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F EV I R + Sbjct: 61 L-FTFFVSEVDKKNLIVRHDNRKK 83 >gi|16077148|ref|NP_387961.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221307890|ref|ZP_03589737.1| hypothetical protein Bsubs1_00405 [Bacillus subtilis subsp. subtilis str. 168] gi|221312212|ref|ZP_03594017.1| hypothetical protein BsubsN3_00405 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317145|ref|ZP_03598439.1| hypothetical protein BsubsJ_00405 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321408|ref|ZP_03602702.1| hypothetical protein BsubsS_00405 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313750|ref|YP_004206037.1| putative transcriptional regulator [Bacillus subtilis BSn5] gi|90101610|sp|O31417|YAZB_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yazB gi|2632347|emb|CAB11856.1| putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291482452|dbj|BAI83527.1| hypothetical protein BSNT_00137 [Bacillus subtilis subsp. natto BEST195] gi|320020024|gb|ADV95010.1| putative transcriptional regulator [Bacillus subtilis BSn5] Length = 69 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 21/63 (33%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S + IS D + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSAAIIQDAADVLNISADELAP 66 Query: 93 GEV 95 E Sbjct: 67 PEK 69 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+++ RK KG +Q F K LG+ S L E+G +P + V D + Sbjct: 8 RRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSAAIIQDAADVLNISADEL 64 >gi|326797649|ref|YP_004315468.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326548413|gb|ADZ76798.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 193 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +IK+ RK T +E+A A+ + ++ EN S+ + + ++ + I Sbjct: 8 QIGNQIKERRKNKGITVQELADRASVSKGLISQIENNRVIPSLMVLIEIIKSLDVDLN-I 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 + ++ + K+ D Y+ Sbjct: 67 FFKDIGVNKNNKTILIKKKDEYSHFE 92 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K RK+KG++ E + +S E R IP + +I + L+ + Sbjct: 11 NQIKERRKNKGITVQELADRASVSKGLISQIENNRVIPSLMVLIEIIKSLDVDLNIFF-- 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 K I K N++ KKD+ Sbjct: 69 ------KDIGVNKNNKTILIKKKDE 87 >gi|323357690|ref|YP_004224086.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274061|dbj|BAJ74206.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 209 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G R++ +RKA T ++A A ++ E G+ S+ L S Sbjct: 18 ERLGARVRGLRKARGLTLTQLAEAAALSHPFLSQLERGLARPSMASLERLARALGTSRVE 77 Query: 90 IYDGEVIDRRYED 102 + R D Sbjct: 78 LIAASEPRRADAD 90 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ +RK +G++ + + + + LS E+G P + ++ + + Sbjct: 22 ARVRGLRKARGLTLTQLAEAAALSHPFLSQLERGLARPSMASLERLARALGTSRVELIAA 81 Query: 176 DEV 178 E Sbjct: 82 SEP 84 >gi|309807064|ref|ZP_07701044.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|325911652|ref|ZP_08174060.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|308166560|gb|EFO68759.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|325476638|gb|EGC79796.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 227 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 7/101 (6%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ G I RK NN T +E+ + S+++ + +G I + N + Sbjct: 1 MKESKIIFGQMIDYFRKQNNLTMEELGQKLGKATSSISRWVSGERYPKIEEIEQIANFFN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + G + + D + +L IRK K Sbjct: 61 TDIYTLIFGFNYNEDSKS-------DLLTVYNQLADIRKHK 94 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G + RK ++ E G+ LG S++S + G P+I+ +I + + Sbjct: 8 FGQMIDYFRKQNNLTMEELGQKLGKATSSISRWVSGERYPKIEEIEQIANFFNTDIYTLI 67 Query: 174 FG 175 FG Sbjct: 68 FG 69 >gi|291542946|emb|CBL16056.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 130 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 1/108 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ R TQ+++A + +E G+ S + + I ++ I Sbjct: 13 VGLRMRYYRIQCGLTQQQVADALKINRTTYTKYETGVSEPSHELLGKIVKMFGIDYNAIL 72 Query: 92 DGEVIDRRYEDVTNKK-RLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 D R + + + A + R Q + + + M Sbjct: 73 DNRDYFERRVADGDMTLNVLTLSERAIIARYRSMSKEDQKKICEYIDM 120 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R G++Q + L + +T + YE G + P + KI ++ + I Sbjct: 17 MRYYRIQCGLTQQQVADALKINRTTYTKYETGVSEPSHELLGKIVKMFGIDYNAIL 72 >gi|288959791|ref|YP_003450131.1| transcriptional regulator [Azospirillum sp. B510] gi|288912099|dbj|BAI73587.1| transcriptional regulator [Azospirillum sp. B510] Length = 118 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 31/84 (36%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G R++ +R++ +Q+++A ++ V+ E G ++ L ++ Sbjct: 3 DDLKRRIGKRLRALRESRALSQEDVAAAIDRSVETVSNIERGRVLAALETLDRLSRRLDV 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRL 109 +D RL Sbjct: 63 PLVDFFDDGEAVVSPARAATDMRL 86 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL-DWIYF 174 RL+++R+ + +SQ + + T+SN E+GR + ++ ++ + L D+ Sbjct: 11 KRLRALRESRALSQEDVAAAIDRSVETVSNIERGRVLAALETLDRLSRRLDVPLVDFFDD 70 Query: 175 GDEVIVP 181 G+ V+ P Sbjct: 71 GEAVVSP 77 >gi|255527936|ref|ZP_05394778.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255508363|gb|EET84761.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 183 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 8/79 (10%), Positives = 28/79 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N + ++A + + ++ E G + +I + + + + Sbjct: 7 IAENLKRLRLERNLSLGQLAELSGVSKVMLSQIEKGDSNPTINTVWKIAKGLNVPYTVLI 66 Query: 92 DGEVIDRRYEDVTNKKRLD 110 D + + + + Sbjct: 67 DKHEDETSVVKKSEAEYQN 85 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +R ++ +S + +L G+ LS E+G + P I KI + + Sbjct: 9 ENLKRLRLERNLSLGQLAELSGVSKVMLSQIEKGDSNPTINTVWKIAKGLNVPYTVLIDK 68 Query: 176 DEVIVPKSIKRAKGNQSSK 194 E K Q+S+ Sbjct: 69 HEDETSVVKKSEAEYQNSE 87 >gi|229062186|ref|ZP_04199510.1| Transcriptional regulator, Xre [Bacillus cereus AH603] gi|228717169|gb|EEL68845.1| Transcriptional regulator, Xre [Bacillus cereus AH603] Length = 190 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 37/122 (30%), Gaps = 10/122 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 I + GE + + + Y ++ R + I Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACLRANSIYEA 127 Query: 134 KL 135 + Sbjct: 128 EA 129 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|254461674|ref|ZP_05075090.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678263|gb|EDZ42750.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 466 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 40/119 (33%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G++++D+R + TQK+ A +N EN S L L E+ + Sbjct: 9 GSKLRDLRGQVSLTQKDFAAKLGVSLPYLNQMENNKRPISTTVVLALAQEFGFDVTELSS 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G+ + A+ L +R + L + + +E+ + Sbjct: 69 GDAERLVTDMREALADPVLDAVDPPLADLRLTASNAPALARAFLELHRAYRQTHERLAS 127 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 30/81 (37%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 L G++L+ +R ++Q +F LG+ L+ E + + Q Sbjct: 1 MALQKIYAGSKLRDLRGQVSLTQKDFAAKLGVSLPYLNQMENNKRPISTTVVLALAQEFG 60 Query: 167 KHLDWIYFGDEVIVPKSIKRA 187 + + GD + ++ A Sbjct: 61 FDVTELSSGDAERLVTDMREA 81 >gi|168211008|ref|ZP_02636633.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710935|gb|EDT23117.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 330 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ IK+ RK N +Q E+A + + +E +I + L S D + Sbjct: 8 NLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLVQLSKLMNRSIDSL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 D+ N I +L Sbjct: 68 LGLNHSTENTNDLNNSDLSKKIFILNKL 95 >gi|167750099|ref|ZP_02422226.1| hypothetical protein EUBSIR_01068 [Eubacterium siraeum DSM 15702] gi|167656972|gb|EDS01102.1| hypothetical protein EUBSIR_01068 [Eubacterium siraeum DSM 15702] Length = 172 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 8/140 (5%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G RIK+ R A TQ E+ G + ++ E+G S++ YL ++ Sbjct: 4 EELGKRIKEARLAKKMTQSELV-GTFITRNMLSRIESGNACPSVKTLEYLAGRLDLPAGS 62 Query: 90 IYDGEVIDRRYEDVTNKKRL------DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 + EV D ++ + + A +K+ K G + G+ + + Sbjct: 63 LISDEVQGEEDPDRNAQQLITVKRLYNESDYSACIKAAEKLTGSEFEDEGQAI-TARCCI 121 Query: 144 SNYEQGRTIPEIKPARKIKQ 163 + E+ + A K + Sbjct: 122 ALSEKAMNSGDKAAAIKYAK 141 Score = 40.7 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +G R+K R K M+Q +L+G + + LS E G P +K + Sbjct: 1 MNSEELGKRIKEARLAKKMTQ---SELVGTFITRNMLSRIESGNACPSVKTLEYLAGRLD 57 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKK 195 + + + A+ + K+ Sbjct: 58 LPAGSLISDEVQGEEDPDRNAQQLITVKR 86 >gi|46143254|ref|ZP_00135591.2| COG1396: Predicted transcriptional regulators [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|303251121|ref|ZP_07337307.1| hypothetical protein APP6_0420 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253543|ref|ZP_07339681.1| hypothetical protein APP2_0731 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307252579|ref|ZP_07534473.1| Transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302647463|gb|EFL77681.1| hypothetical protein APP2_0731 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650131|gb|EFL80301.1| hypothetical protein APP6_0420 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859901|gb|EFM91920.1| Transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 112 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I RL+ + + KG++ F +LL +P TL NY P + K+ V +L+W Sbjct: 1 MSINNRLREVMEYKGLNIKAFAELLNVPYRTLQNYLLNERDPSAEVLIKVSDVLNVNLNW 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + G+ + S + N+ K+ Sbjct: 61 LMRGEGYMFRSSTNENELNEKEKQ 84 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 26/75 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++++ + K A N + + S + + + ++ +W+ Sbjct: 3 INNRLREVMEYKGLNIKAFAELLNVPYRTLQNYLLNERDPSAEVLIKVSDVLNVNLNWLM 62 Query: 92 DGEVIDRRYEDVTNK 106 GE R N+ Sbjct: 63 RGEGYMFRSSTNENE 77 >gi|331002826|ref|ZP_08326340.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413315|gb|EGG92683.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon 107 str. F0167] Length = 104 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 27/69 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I+ +R++ TQ+E+ + + +E + S + +E+S D + + ++ Sbjct: 4 IRKLRQSKGMTQRELGEVIGVKQQTICKYERANSNVSWDILQKISAVFEVSLDELIEEDL 63 Query: 96 IDRRYEDVT 104 Sbjct: 64 EKCLKSRNK 72 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ +R+ KGM+Q E G+++G+ T+ YE+ + +KI V + LD + Sbjct: 1 MDSIRKLRQSKGMTQRELGEVIGVKQQTICKYERANSNVSWDILQKISAVFEVSLDELI- 59 Query: 175 GDEVIVPKSIKRAKGNQSSKKSK 197 +E + R K + S K Sbjct: 60 -EEDLEKCLKSRNKMLEKSIMEK 81 >gi|319891788|ref|YP_004148663.1| transcriptional regulator, XRE family [Staphylococcus pseudintermedius HKU10-03] gi|317161484|gb|ADV05027.1| transcriptional regulator, XRE family [Staphylococcus pseudintermedius HKU10-03] Length = 277 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 41/83 (49%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G RIK IR + KTQ++ + + V ++E G + + L + N IS D Sbjct: 5 QEIGARIKKIRINSGKTQEKFGELFSASKGNVAMWEKGASLPNKKRLLQISNMANISLDK 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPY 112 + GE++ E+++ + + Sbjct: 65 LLYGELLPYIRENLSFSDVENYF 87 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 D IGAR+K IR + G +Q +FG+L ++ +E+G ++P K +I + Sbjct: 1 MYDKQEIGARIKKIRINSGKTQEKFGELFSASKGNVAMWEKGASLPNKKRLLQISNMANI 60 Query: 168 HLDWIYFGD 176 LD + +G+ Sbjct: 61 SLDKLLYGE 69 >gi|297200612|ref|ZP_06918009.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|297147685|gb|EDY53778.2| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 195 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 8 NLGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R+ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 12 YLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 68 >gi|170746516|ref|YP_001752776.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653038|gb|ACB22093.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 146 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 4/114 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+RI +R AN +Q +A V +E G + + + Sbjct: 18 VGSRIAFLRAANGLSQSALASALGVSFQQVQKYETGKNRVGAGRLQAIAERLGVPVSSFF 77 Query: 92 DGEVI---DRRYEDVTNKKRLDPYAIGARLKSIRKDKG-MSQIEFGKLLGMPNS 141 + E D + ++ ++ + + +S ++ +G S Sbjct: 78 EPEPEATTDSGPALLRVAGAVELLRAYNQIADDQMRRDVLSLVKSAARIGHTRS 131 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 27/80 (33%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + + +G+R+ +R G+SQ LG+ + YE G+ Sbjct: 1 MANPTPKPKQTTAIDHGVGSRIAFLRAANGLSQSALASALGVSFQQVQKYETGKNRVGAG 60 Query: 157 PARKIKQVTKKHLDWIYFGD 176 + I + + + + Sbjct: 61 RLQAIAERLGVPVSSFFEPE 80 >gi|153810580|ref|ZP_01963248.1| hypothetical protein RUMOBE_00961 [Ruminococcus obeum ATCC 29174] gi|149833759|gb|EDM88840.1| hypothetical protein RUMOBE_00961 [Ruminococcus obeum ATCC 29174] Length = 139 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 33/71 (46%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 + + N T ++A A ++A++ +++G + + + + + + ++ D++ G+ I Sbjct: 7 QLLQKNGVTSYKVAKEAGVTQTALSNWKSGRSTPTTKTLQKIADYFGVTIDYLMTGKDIS 66 Query: 98 RRYEDVTNKKR 108 E R Sbjct: 67 APQELTAKDNR 77 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 37/81 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + + + G++ + K G+ + LSN++ GR+ P K +KI +D++ Sbjct: 1 MYEVFEQLLQKNGVTSYKVAKEAGVTQTALSNWKSGRSTPTTKTLQKIADYFGVTIDYLM 60 Query: 174 FGDEVIVPKSIKRAKGNQSSK 194 G ++ P+ + +K Sbjct: 61 TGKDISAPQELTAKDNRDIAK 81 >gi|153956442|ref|YP_001397207.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856749|ref|YP_002473871.1| hypothetical protein CKR_3406 [Clostridium kluyveri NBRC 12016] gi|302387477|ref|YP_003823299.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|146349300|gb|EDK35836.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219570473|dbj|BAH08457.1| hypothetical protein [Clostridium kluyveri NBRC 12016] gi|302198105|gb|ADL05676.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 107 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 1/95 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G IK+ R A TQ +A + EN + L + + Sbjct: 1 MEELLNSFGQTIKEARIAAGMTQDALAEQVGVTPRYIMAIENENKHPRMPVLLKIIRALK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 IS D I+ E+ + + +K Sbjct: 61 ISADTIFYPEIQ-HSDREKEQLMHMIQLCGKKEIK 94 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G +K R GM+Q + +G+ + E P + KI + K D Sbjct: 6 NSFGQTIKEARIAAGMTQDALAEQVGVTPRYIMAIENENKHPRMPVLLKIIRALKISADT 65 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 I++ E+ K + KK+ K + Sbjct: 66 IFYP-EIQHSDREKEQLMHMIQLCGKKEIKIA 96 >gi|153955364|ref|YP_001396129.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855783|ref|YP_002472905.1| hypothetical protein CKR_2440 [Clostridium kluyveri NBRC 12016] gi|146348222|gb|EDK34758.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569507|dbj|BAH07491.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 78 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 31/73 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R++ TQ+++ A+N E SI A + N + + ++ Sbjct: 3 NRLKELRESLGLTQEQLGKLVGVSRQAINAIETEKFEPSIWLAYDISNIFNCFIEEVFLF 62 Query: 94 EVIDRRYEDVTNK 106 + R+ ++ Sbjct: 63 KKSKRKSRAQQSR 75 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R+ G++Q + GKL+G+ ++ E + P I A I + ++ ++ Sbjct: 1 MKNRLKELRESLGLTQEQLGKLVGVSRQAINAIETEKFEPSIWLAYDISNIFNCFIEEVF 60 Query: 174 FGDEVIVPKSIKRAKG 189 + ++++G Sbjct: 61 LFKKSKRKSRAQQSRG 76 >gi|120401814|ref|YP_951643.1| hypothetical protein Mvan_0799 [Mycobacterium vanbaalenii PYR-1] gi|119954632|gb|ABM11637.1| protein of unknown function DUF955 [Mycobacterium vanbaalenii PYR-1] Length = 475 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 20/110 (18%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ +R +Q +A S +N E+ + ++ L + + + Sbjct: 6 VGARIRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDA---- 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI----EFGKLLG 137 T D + A L+ + D+ + E ++G Sbjct: 62 ------------TFFASQDDTRLIAELREVLMDRDLDVDVDPAEVADMVG 99 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +GAR++ +R ++G SQ ++L + S L+ E + +I +V Sbjct: 1 MAKTFVGARIRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + D+ + ++ Sbjct: 61 ATFFASQDDTRLIAELRE 78 >gi|299069355|emb|CBJ40621.1| putative transcriptional regulator [Ralstonia solanacearum CMR15] Length = 182 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ + E++ A +S ++ E + + ++ L N +S Sbjct: 1 MGIALQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVSLTDFL 60 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R+ + +S E + G+ S LS E+ T P + ++ L Sbjct: 5 LQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVSLTDFL 60 >gi|291540994|emb|CBL14105.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 115 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 7/109 (6%) Query: 21 ITPEIRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ + + KD G RI D RKA +Q E+A A++ ENG R Sbjct: 1 MSSKAQTREKDYERGLRIADRRKAMGLSQDELAHRVGIGRQALSAIENG-GDFKTRTLDN 59 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 L +S D+I G+ + + +D + L IR+ M Sbjct: 60 LAIVLGVSVDFIMYGKNEENSELL---SEAMDVLSDMDEL-QIRQCLAM 104 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y G R+ RK G+SQ E +G+ LS E G + + + V +D+ Sbjct: 12 YERGLRIADRRKAMGLSQDELAHRVGIGRQALSAIENGGDF-KTRTLDNLAIVLGVSVDF 70 Query: 172 IYFGDEVIVPKSIKRA 187 I +G + + A Sbjct: 71 IMYGKNEENSELLSEA 86 >gi|260432343|ref|ZP_05786314.1| DNA-binding protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416171|gb|EEX09430.1| DNA-binding protein [Silicibacter lacuscaerulensis ITI-1157] Length = 198 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 27/75 (36%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 Q +G I+ +RK+ T ++A ++ ++ E + SI + + Sbjct: 15 QTGATLGADIRALRKSRGLTLTDVARRLDRSVGWLSQVERDLSEPSISDLRQIAECLGVP 74 Query: 87 FDWIYDGEVIDRRYE 101 ++ + + Sbjct: 75 MSMLFAHTGVTPDEQ 89 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A ++++RK +G++ + + L LS E+ + P I R+I + + ++ Sbjct: 22 ADIRALRKSRGLTLTDVARRLDRSVGWLSQVERDLSEPSISDLRQIAECLGVPMSMLF 79 >gi|229553254|ref|ZP_04441979.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540134|ref|YP_003174633.1| transcription regulator [Lactobacillus rhamnosus Lc 705] gi|229313340|gb|EEN79313.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257151810|emb|CAR90782.1| Transcription regulator [Lactobacillus rhamnosus Lc 705] Length = 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++ R+ +Q +A +NL ENG + S+ L L + ++ Sbjct: 2 NRVREFRREKKLSQLALAEKIGVARQTINLIENGKYNPSLELCLKLSWTLGTDLNTLFWR 61 Query: 94 EVIDR 98 E + Sbjct: 62 EKNEE 66 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 33/66 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ R++K +SQ+ + +G+ T++ E G+ P ++ K+ L+ +++ Sbjct: 1 MNRVREFRREKKLSQLALAEKIGVARQTINLIENGKYNPSLELCLKLSWTLGTDLNTLFW 60 Query: 175 GDEVIV 180 ++ Sbjct: 61 REKNEE 66 >gi|228930898|ref|ZP_04093868.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828765|gb|EEM74431.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 127 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 33/85 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK+ + ++ A +S +E G S++ + + ++ S D+I Sbjct: 6 ERLSELRKSKKWSLQDTADQLGIAKSTYAGYETGYRWPSLQSLSKIADLFDTSADYILGR 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 R + + + + + Sbjct: 66 TDDARSKDVIELAELMKNPDKTISI 90 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RL +RK K S + LG+ ST + YE G P ++ KI + D Sbjct: 1 MRKMLERLSELRKSKKWSLQDTADQLGIAKSTYAGYETGYRWPSLQSLSKIADLFDTSAD 60 Query: 171 WIYFG-DEVIVPKSIKRAKGNQSSKKS 196 +I D+ I+ A+ ++ K+ Sbjct: 61 YILGRTDDARSKDVIELAELMKNPDKT 87 >gi|229104520|ref|ZP_04235186.1| hypothetical protein bcere0019_36660 [Bacillus cereus Rock3-28] gi|228678856|gb|EEL33067.1| hypothetical protein bcere0019_36660 [Bacillus cereus Rock3-28] Length = 190 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 6 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 65 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 66 VSFTSLINNPQPDTKVVLRDDVQVL 90 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 15 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 74 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 75 PQPDTKVVLRD 85 >gi|300776282|ref|ZP_07086140.1| MerR family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300501792|gb|EFK32932.1| MerR family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 492 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 30/77 (38%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + E G ++K R+ N + +++A+ +S +N ENG + L Sbjct: 1 MNSESDFIKTVFGLKLKQQRQKRNWSLQDLAVKTGLSKSYLNEIENGKKYPKHDKIIQLS 60 Query: 81 NEYEISFDWIYDGEVID 97 +FD + ++ Sbjct: 61 EALSCTFDDLVSTKLDK 77 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK R+ + S + G+ S L+ E G+ P+ ++ + D + Sbjct: 16 LKQQRQKRNWSLQDLAVKTGLSKSYLNEIENGKKYPKHDKIIQLSEALSCTFDDLV 71 >gi|239815077|ref|YP_002943987.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801654|gb|ACS18721.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 102 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A GA ++++R + G++Q L G+ S + E+G +P + +I + + Sbjct: 23 LAFGAVVRALRTEDGIAQETLAHLAGIERSHMGKIERGEHMPTLVLVLRIARALGRSAGE 82 Query: 172 IYFGDEVIVPKS 183 + E +PK Sbjct: 83 LMLETEARLPKE 94 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 21/60 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +R + Q+ +A A S + E G ++ L + S + Sbjct: 25 FGAVVRALRTEDGIAQETLAHLAGIERSHMGKIERGEHMPTLVLVLRIARALGRSAGELM 84 >gi|110678693|ref|YP_681700.1| HTH-type transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109454809|gb|ABG31014.1| HTH-type transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 119 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG ++K IR +Q ++A N + +E G + L +++ + + Sbjct: 9 VGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIFDVPTSYFF 68 Query: 92 DG 93 +G Sbjct: 69 EG 70 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK IR + +SQ + + L + + YE G ++ ++ + + G + Sbjct: 13 LKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIFDVPTSYFFEGLD 72 Query: 178 VIVPKSIKR 186 + +R Sbjct: 73 AATKTTCER 81 >gi|17549183|ref|NP_522523.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431435|emb|CAD18113.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 182 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+ + E++ A +S ++ E + + ++ L N +S Sbjct: 1 MGIALQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVSLTDFL 60 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ +R+ + +S E + G+ S LS E+ T P + ++ L Sbjct: 5 LQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVSLTDFL 60 >gi|75762080|ref|ZP_00741987.1| Transcriptional repressor [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490433|gb|EAO53742.1| Transcriptional repressor [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 95 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +K +RK T + +A S N +E + L + + + D+I Sbjct: 2 DIGGNLKFLRKRYGWTTEHVANQLEVSISTYNGYEINYRKPNPEMLCKLADVFNSTTDFI 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +RK G + L + ST + YE P + K+ V D+I Sbjct: 6 NLKFLRKRYGWTTEHVANQLEVSISTYNGYEINYRKPNPEMLCKLADVFNSTTDFIL 62 >gi|319760985|ref|YP_004124922.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] gi|317115546|gb|ADU98034.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 102 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I+ R +Q +A A S ++L E G + + + + + Sbjct: 2 NIGQAIQLARSKRKLSQAALAKRAGISVSYLSLLERGRRDPPLSTLQRIAAALVMPVEIL 61 Query: 91 YD 92 + Sbjct: 62 FF 63 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ R + +SQ K G+ S LS E+GR P + ++I ++ Sbjct: 1 MNIGQAIQLARSKRKLSQAALAKRAGISVSYLSLLERGRRDPPLSTLQRIAAALVMPVEI 60 Query: 172 IYF 174 ++F Sbjct: 61 LFF 63 >gi|317125042|ref|YP_004099154.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Intrasporangium calvum DSM 43043] gi|315589130|gb|ADU48427.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Intrasporangium calvum DSM 43043] Length = 509 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +G I+D R+ TQ E+A + AV E G + S+ + + + Sbjct: 3 ESYLTRIGGLIRDARRHKAMTQAELAELLGTSQGAVTRIEAGKQNLSLDMLAKIGDALD 61 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ R+ K M+Q E +LLG ++ E G+ + KI Sbjct: 13 IRDARRHKAMTQAELAELLGTSQGAVTRIEAGKQNLSLDMLAKIGDALD 61 >gi|312905524|ref|ZP_07764638.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|310631253|gb|EFQ14536.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 270 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RI+ IR+ + ++ S VN +E G+ + ++ + Sbjct: 6 QAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIGHVTNE 65 Query: 89 WIYDGEVIDRRYEDVTNKK 107 ++ G ++ ++ KK Sbjct: 66 YLLYGTQENQYILEMLQKK 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D A+G R++ IR++ +S +FGKL+G +P ST++N+E+G +P+ + +I ++ Sbjct: 1 MEIDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIG 60 Query: 166 KKHLDWIYFGDEV 178 +++ +G + Sbjct: 61 HVTNEYLLYGTQE 73 >gi|306833460|ref|ZP_07466587.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424230|gb|EFM27369.1| transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 226 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY- 91 G ++K+IR+ +Q E+A N + +ENG + + L + + Sbjct: 4 GEKLKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSRLLGVEETYFVS 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + ++D ++ + + LK Sbjct: 64 EYHIVDTYFKLNQDNRHKLENYADDLLKE 92 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK+IR++KG SQ E KLL + + N+E G+T P K + ++ + Sbjct: 1 MFSGEKLKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSRLLGVEETY 60 Query: 172 IY 173 Sbjct: 61 FV 62 >gi|298243569|ref|ZP_06967376.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297556623|gb|EFH90487.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 460 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VGT I+++R N TQ ++A S ++ E G S++ L ++ ++ Sbjct: 17 VGTNIREVRTKLNMTQAQLAAP-EFSISYISAIERGKIRPSLKALSILARRLDVPLTFLL 75 Query: 92 DGEVIDRRYEDVTNKKRLD 110 +G D Sbjct: 76 EGSPAGAAEARAVGYSPAD 94 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R M+Q + S +S E+G+ P +K + + L ++ G Sbjct: 20 NIREVRTKLNMTQAQLAAP-EFSISYISAIERGKIRPSLKALSILARRLDVPLTFLLEG 77 >gi|269139111|ref|YP_003295812.1| predicted transcriptional regulator [Edwardsiella tarda EIB202] gi|267984772|gb|ACY84601.1| predicted transcriptional regulator [Edwardsiella tarda EIB202] Length = 194 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 28/88 (31%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ + RK T E+A + ++ ++ E G S S L + I+ Sbjct: 13 DIARLLLKHRKTRGWTVAELAQRSGVSQAMISKVERGTSSPSATILSRLASAMNITLSTF 72 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++ + + Sbjct: 73 FAELEQHQNSRVRFAHQQQHWTDEQSGI 100 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 1/91 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 + + + +D LK RK +G + E + G+ + +S E+G + P + Sbjct: 2 DKTSKNQIVDSDIARLLLKH-RKTRGWTVAELAQRSGVSQAMISKVERGTSSPSATILSR 60 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + L + E ++ A Q Sbjct: 61 LASAMNITLSTFFAELEQHQNSRVRFAHQQQ 91 >gi|256374687|ref|YP_003098347.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918990|gb|ACU34501.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 86 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 30/83 (36%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++P R + + RI +R ++ ++A + E G S+ AL + Sbjct: 1 MSPVRRGSEQPIHNRIGVLRAERGLSRADLAEAVEVNPQTIGALERGDHYPSLDLALRIC 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDV 103 + + + ++ + V Sbjct: 61 EVFGLPVEAVFGRAPFEPLSTQV 83 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 I R+ +R ++G+S+ + + + + T+ E+G P + A +I +V ++ ++ Sbjct: 12 IHNRIGVLRAERGLSRADLAEAVEVNPQTIGALERGDHYPSLDLALRICEVFGLPVEAVF 71 >gi|254819823|ref|ZP_05224824.1| hypothetical protein MintA_07859 [Mycobacterium intracellulare ATCC 13950] Length = 190 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 19/67 (28%) Query: 42 ANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYE 101 T +E+ A S ++ E+G ++ + L +S D + Sbjct: 22 QRGMTLQEVGERAGIDVSTLSRLESGKRRLALDHLPRLARALSVSTDELLQTGSAPDPRV 81 Query: 102 DVTNKKR 108 Sbjct: 82 RGAAHTH 88 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 124 DKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +GM+ E G+ G+ STLS E G+ + ++ + D + Sbjct: 22 QRGMTLQEVGERAGIDVSTLSRLESGKRRLALDHLPRLARALSVSTDELL 71 >gi|218677991|ref|ZP_03525888.1| XRE family transcriptional regulator [Rhizobium etli CIAT 894] Length = 182 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 30/90 (33%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G+++ ++R+ N +E+A + S ++L E S SI + + Sbjct: 1 MPKIGSKLHELRRRRNLGVRELAARSGISHSTISLIERDKMSPSIDTLSAVLEALGTTMP 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + Y + L + Sbjct: 61 GFFSDLQSSLPYSPFYSAVDLVEIGKVDAI 90 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L +R+ + + E G+ +ST+S E+ + P I + + + + + Sbjct: 8 LHELRRRRNLGVRELAARSGISHSTISLIERDKMSPSIDTLSAVLEALGTTMPGFFSDLQ 67 Query: 178 VIVPKS 183 +P S Sbjct: 68 SSLPYS 73 >gi|197106910|ref|YP_002132287.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480330|gb|ACG79858.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 144 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG RI+ RK +Q+ +A V +E S + + S + Sbjct: 21 RHVGLRIRMRRKELGMSQERLAEAIGLTFQQVQKYERATNRVSASKLFEMARALQTSIAY 80 Query: 90 IYDG 93 Y+G Sbjct: 81 FYEG 84 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 1/88 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + +D + ++ RK+ GMSQ + +G+ + YE+ Sbjct: 1 MHRRMKTSHDAETEGPNPVDRHVGLR-IRMRRKELGMSQERLAEAIGLTFQQVQKYERAT 59 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEV 178 ++ + + + + Y G E Sbjct: 60 NRVSASKLFEMARALQTSIAYFYEGLEE 87 >gi|188534357|ref|YP_001908154.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99] gi|188029399|emb|CAO97276.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 187 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 29/80 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K + R+ D+R+ + + + +A ++++ E S + L N Y ++ Sbjct: 8 KRLAQRLCDLRREKSWSLETLAELTGISRASLSRIERAESSPTATLLNRLCNAYGLTMSR 67 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 + D + L Sbjct: 68 LLSDVERDGIQLLRPESQSL 87 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%) Query: 109 LDPYAIGARLKS----IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 +D A RL +R++K S +L G+ ++LS E+ + P ++ Sbjct: 1 MDVNATEKRLAQRLCDLRREKSWSLETLAELTGISRASLSRIERAESSPTATLLNRLCNA 60 Query: 165 TKKHLDWIYFGDE 177 + + E Sbjct: 61 YGLTMSRLLSDVE 73 >gi|170755017|ref|YP_001780261.1| cupin domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169120229|gb|ACA44065.1| cupin domain protein [Clostridium botulinum B1 str. Okra] Length = 183 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N + ++A +N + ++ E G + +I + N ++ + + Sbjct: 7 IAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLL 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + D +N + Sbjct: 67 EQKEHDTCIIKKSNLEPQ 84 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK++R ++ +S + +L + LS E+G T P I KI K + Sbjct: 9 ENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY-TLLLE 67 Query: 176 DEVIVPKSIKRAKGNQSSKKS 196 + IK++ + Sbjct: 68 QKEHDTCIIKKSNLEPQISEE 88 >gi|315127949|ref|YP_004069952.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016463|gb|ADT69801.1| Predicted transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + RK G+SQ E + + T+S E R P + A KI Q ++ ++ Sbjct: 1 MQNHIAEFRKKAGLSQQELADAINVSRKTISTVETSRFTPSVIIALKIAQHFNTSVERLF 60 Query: 174 FGDE 177 DE Sbjct: 61 SLDE 64 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I + RK +Q+E+A N ++ E + S+ AL + + S + ++ Sbjct: 3 NHIAEFRKKAGLSQQELADAINVSRKTISTVETSRFTPSVIIALKIAQHFNTSVERLFSL 62 Query: 94 EVID 97 + D Sbjct: 63 DEHD 66 >gi|295397657|ref|ZP_06807732.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563] gi|294974120|gb|EFG49872.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563] Length = 222 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK IR T +E N + + +E G + + + L + IS D + Sbjct: 6 LGNKIKSIRMEKGLTLEEFGKKFNTSKVTIYNWEIGRNAPNKKNLAILADLAGISVDELL 65 Query: 92 DG 93 G Sbjct: 66 YG 67 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G ++KSIR +KG++ EFGK T+ N+E GR P K + + Sbjct: 1 MDKIRLGNKIKSIRMEKGLTLEEFGKKFNTSKVTIYNWEIGRNAPNKKNLAILADLAGIS 60 Query: 169 LDWIYFGD-EVIVPKSIKRAKGNQSSKKSKKDKK 201 +D + +G E ++ K +K + + + K Sbjct: 61 VDELLYGTREELISKGVKDGLQDFFDRSDNQGYK 94 >gi|288870629|ref|ZP_06114758.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288866515|gb|EFC98813.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 127 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 29/83 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +Y +G R+K R + TQ +A + E+ + + E I+ Sbjct: 2 EYHMGIGARLKQARSSKGYTQNSLADAIGVSRGVITNIEHEKSEPQMLVIRGICYELGIN 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRL 109 W+ GE +D +L Sbjct: 62 SSWLLQGEGPMESEKDAERSAQL 84 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IGARLK R KG +Q +G+ ++N E ++ P++ R I + Sbjct: 4 HMGIGARLKQARSSKGYTQNSLADAIGVSRGVITNIEHEKSEPQMLVIRGICYELGINSS 63 Query: 171 WIYFGDEVIVPK 182 W+ G+ + + Sbjct: 64 WLLQGEGPMESE 75 >gi|271966468|ref|YP_003340664.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509643|gb|ACZ87921.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 192 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++++R T ++MA A+ S ++ E G + ++ + + +S + Sbjct: 7 LGLRVQELRHLRGLTLQQMAGAADVSVSMLSSVERGQKAPTVVVLGRIADGLGVSLAELV 66 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +D A+G R++ +R +G++ + + S LS+ E+G+ P + +I Sbjct: 1 MVDLAALGLRVQELRHLRGLTLQQMAGAADVSVSMLSSVERGQKAPTVVVLGRIADGLGV 60 Query: 168 HLDWIYFGDEV 178 L + E Sbjct: 61 SLAELVAEPED 71 >gi|256397649|ref|YP_003119213.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363875|gb|ACU77372.1| putative transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 153 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 57/147 (38%), Gaps = 8/147 (5%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R + + VG ++ +R + ++Q ++ A++ +E G + + + E + Sbjct: 10 ERAFVRIVGA-LRSVRVTSERSQNSLSTFLPVRGRAISEWETGAIQPKLSHLIQWSWELD 68 Query: 85 -----ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 + D + + +R + + + + L++ R+ GM+Q E L+G+ Sbjct: 69 RRLVIVGRDGELRNDSLRQRPGESW--EVFERRRLATPLRNRRQAMGMAQGELADLVGVT 126 Query: 140 NSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +E R P Q Sbjct: 127 RDSIQRWELVRVPPRPIALIVWAQKLG 153 >gi|225573061|ref|ZP_03781816.1| hypothetical protein RUMHYD_01252 [Blautia hydrogenotrophica DSM 10507] gi|225039587|gb|EEG49833.1| hypothetical protein RUMHYD_01252 [Blautia hydrogenotrophica DSM 10507] Length = 110 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 4/103 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R A TQ M + + +ENG S S+ + + + + Sbjct: 8 NNLRVLRTARGYTQAYMGHKLHIQRQSYCNYENGQRSPSLEITSSIAEILGVDLNTLITA 67 Query: 94 EVIDRRYEDVTNKKRLDPYA----IGARLKSIRKDKGMSQIEF 132 ++ D + A ++ + M+ E Sbjct: 68 KLPADVLTKEDLAVLEDYLSLPPKAQADIRLQIEQLKMNSAES 110 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ L+ +R +G +Q G L + + NYE G+ P ++ I ++ Sbjct: 1 MNISDFPNNLRVLRTARGYTQAYMGHKLHIQRQSYCNYENGQRSPSLEITSSIAEILGVD 60 Query: 169 LDWIYF 174 L+ + Sbjct: 61 LNTLIT 66 >gi|118477836|ref|YP_894987.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228946049|ref|ZP_04108387.1| hypothetical protein bthur0007_21990 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|118417061|gb|ABK85480.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228813637|gb|EEM59920.1| hypothetical protein bthur0007_21990 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 204 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 20 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 79 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 80 VSFTSLINNPQPDTKVILRNDIQVL 104 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 29 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLI 86 >gi|296156536|ref|ZP_06839374.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893135|gb|EFG72915.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 183 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V TR++ IRK + +Q+E+A A ++L E S S+ L +S Sbjct: 4 EVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVI 96 + EV Sbjct: 64 FTFEVE 69 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ IRK G+SQ E K G+ N T+S EQ R P + +K+ + L + + Sbjct: 9 LQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFFTFEV 68 Query: 178 VIVPKSIKR 186 + + R Sbjct: 69 EVERSVVSR 77 >gi|5758923|gb|AAD50896.1|AF169189_1 434-GCN4-linker [Cloning vector pLS3] Length = 138 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +R+K R Q E+A + ++ ENG R+ L + +S DW+ Sbjct: 3 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 61 Query: 92 DGEVIDRRYE 101 +G Sbjct: 62 NGTSDSNVRF 71 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I +R+KS R G++Q E + +G ++ E G+T + ++ +DW Sbjct: 1 MSISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDW 59 Query: 172 IYFG 175 + G Sbjct: 60 LLNG 63 >gi|54308498|ref|YP_129518.1| hypothetical protein PBPRA1305 [Photobacterium profundum SS9] gi|46912927|emb|CAG19716.1| hypothetical helix-turn-helix XRE-family like proteins [Photobacterium profundum SS9] Length = 104 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+ R++ R+ + ++Q+ K LG+ T + E G+T P+ I Q+ K Sbjct: 7 DRKALAQRIRVARECRELTQVRMAKYLGLARQTYLDIETGKTEPKAGTLLAIAQILKTDY 66 Query: 170 DWIYFGDE 177 ++ G++ Sbjct: 67 RFLLTGEK 74 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 22/69 (31%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K + RI+ R+ TQ MA E G L + + + Sbjct: 8 RKALAQRIRVARECRELTQVRMAKYLGLARQTYLDIETGKTEPKAGTLLAIAQILKTDYR 67 Query: 89 WIYDGEVID 97 ++ GE + Sbjct: 68 FLLTGEKYN 76 >gi|330468378|ref|YP_004406121.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811349|gb|AEB45521.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 441 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 EI + G R+K R A +Q+E+A S ++L E G ++ +YL Sbjct: 12 GEIAVTQPEFGQRLKARRTALRMSQRELAGDF-VTPSYISLLEAGSRVPTLDVVVYLGRM 70 Query: 83 YEISFDWIYDGEVID 97 + S + + D +V Sbjct: 71 LDCSLEELLDVDVAP 85 Score = 39.6 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G RLK+ R MSQ E + S +S E G +P + + ++ L+ + Sbjct: 20 EFGQRLKARRTALRMSQRELAGDF-VTPSYISLLEAGSRVPTLDVVVYLGRMLDCSLEEL 78 Query: 173 YFGD 176 D Sbjct: 79 LDVD 82 >gi|312879205|ref|ZP_07739005.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] gi|310782496|gb|EFQ22894.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] Length = 134 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G+RI++ RKA QKE+A + ++ E G S+ + Sbjct: 5 GSRIREARKARGLEQKELAERMGISAAFLSRIERGERGCSLDLLRRASAVLGCPLAEL 62 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + G+R++ RK +G+ Q E + +G+ + LS E+G + R+ V L Sbjct: 1 MDSTGSRIREARKARGLEQKELAERMGISAAFLSRIERGERGCSLDLLRRASAVLGCPLA 60 Query: 171 WIYFGDEVIVPKS 183 + +E P+ Sbjct: 61 EL--AEETPRPER 71 >gi|290770159|gb|ADD61918.1| putative protein [uncultured organism] Length = 126 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 4/109 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK TQ+E++ ++ + E G + S L IS D + Sbjct: 11 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSHLILRALAKVLHISLDTLI 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 + +V ++ N+ ++ + ++ +Q +L + Sbjct: 71 NPDVS--LEDEGVNQMKMLYSSCPPEMRD--TLLHHTQETVKELTELSK 115 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK+K ++Q E L + ++N E+G+ P R + +V L Sbjct: 7 DLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSHLILRALAKVLHISL 66 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSS 193 D + D + + + + K SS Sbjct: 67 DTLINPDVSLEDEGVNQMKMLYSS 90 >gi|300949501|ref|ZP_07163497.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] gi|300451077|gb|EFK14697.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] Length = 231 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 +G+RI+ +R A N E+A + ++ E G S + L +S Sbjct: 2 KIGSRIRQLRLAKNIKIAELAEAVGVDAANISRLETGKQKQFSEQTLNRLAQALSVSVPD 61 Query: 90 IYDGEVIDRR 99 ++ + D Sbjct: 62 LFTSDENDTT 71 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLD 170 IG+R++ +R K + E + +G+ + +S E G+ + ++ Q + Sbjct: 1 MKIGSRIRQLRLAKNIKIAELAEAVGVDAANISRLETGKQKQFSEQTLNRLAQALSVSVP 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSK 194 ++ DE I K K Sbjct: 61 DLFTSDENDTTVHINSEKHASPVK 84 >gi|295108081|emb|CBL22034.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 273 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 4/103 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM---CSTSIRYALYLRNEYEISFDWI 90 R+KD+R +E+A +SA+ +EN + L L + Y++S D++ Sbjct: 9 ERLKDLRVERGLNLEELAQETGISKSALGSYENDNDEYKEINHGSLLKLADFYKVSVDYL 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + + L + LKS R + + Sbjct: 69 LGLTNNRKYENTPIEELHLSD-EVVELLKSERFNNRLLCEIIS 110 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG---RTIPEIKPARKIKQVTKKH 168 ++ RLK +R ++G++ E + G+ S L +YE K+ K Sbjct: 5 ISVQERLKDLRVERGLNLEELAQETGISKSALGSYENDNDEYKEINHGSLLKLADFYKVS 64 Query: 169 LDWIY 173 +D++ Sbjct: 65 VDYLL 69 >gi|291531485|emb|CBK97070.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 172 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 8/140 (5%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +++G RIK+ R A TQ E+ G + ++ E+G S++ YL ++ Sbjct: 4 EELGKRIKEARLAKKMTQSELV-GTFITRNMLSRIESGNACPSVKTLEYLAGRLDLPAGS 62 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYA------IGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 + EV D ++ + A +K+ K G + G+ + + Sbjct: 63 LISDEVQGEEDPDRNAQQLITVKRLYKKSDYSACIKAAEKLNGSEFEDEGQAI-TARCCI 121 Query: 144 SNYEQGRTIPEIKPARKIKQ 163 + E+ + A K + Sbjct: 122 ALSEKAMNSGDKAAAIKYAK 141 Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +G R+K R K M+Q +L+G + + LS E G P +K + Sbjct: 1 MNSEELGKRIKEARLAKKMTQ---SELVGTFITRNMLSRIESGNACPSVKTLEYLAGRLD 57 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + DEV + R Q + KKS Sbjct: 58 LPAGSLIS-DEVQGEEDPDR-NAQQLITVKRLYKKSD 92 >gi|291530986|emb|CBK96571.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] gi|291551031|emb|CBL27293.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] gi|295104178|emb|CBL01722.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 118 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK TQ+E++ ++ + E G + S L IS D + Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 + ++ N+ ++ + ++ +Q +L + N Sbjct: 69 N--PDISLEDEGVNQMKMLYSSCPPEMRD--TLLHHTQETVKELTELSEKFEMN 118 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK+K ++Q E L + ++N E+G+ P R + +V L Sbjct: 5 DLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISL 64 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSS 193 D + D + + + + K SS Sbjct: 65 DTLINPDISLEDEGVNQMKMLYSS 88 >gi|284045004|ref|YP_003395344.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949225|gb|ADB51969.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 196 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 32/65 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R++ +R+A + + +++A + ++ E G S +++ A + + ++ + Sbjct: 12 IGSRVRALREAMDLSLRDLAERSGVSAPMLSQVERGETSPTLQVATRIAHGLDLRLSQLL 71 Query: 92 DGEVI 96 + Sbjct: 72 RLDEE 76 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 37/79 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG+R++++R+ +S + + G+ LS E+G T P ++ A +I L + Sbjct: 11 AIGSRVRALREAMDLSLRDLAERSGVSAPMLSQVERGETSPTLQVATRIAHGLDLRLSQL 70 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 DE ++ + + Sbjct: 71 LRLDEEGAVTIVRVQERRR 89 >gi|302869357|ref|YP_003837994.1| Cupin 2 conserved barrel domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504168|ref|YP_004083055.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5] gi|302572216|gb|ADL48418.1| Cupin 2 conserved barrel domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410787|gb|ADU08904.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5] Length = 207 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 32/90 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V +++D+R A + +E+A + + + E + SI + + + +S + Sbjct: 15 VARQVRDLRAARGWSFEELAGRSGVSKGMLVQIEGARTNPSIGTLCRVADAFGVSIARLL 74 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + L + Sbjct: 75 EPAEQSTVRVSAADEAPVLWRGPNGGLARL 104 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ +++ +R +G S E G+ L E RT P I ++ + + Sbjct: 14 AVARQVRDLRAARGWSFEELAGRSGVSKGMLVQIEGARTNPSIGTLCRVADAFGVSIARL 73 Query: 173 YFGDE 177 E Sbjct: 74 LEPAE 78 >gi|254700709|ref|ZP_05162537.1| XRE family transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261751218|ref|ZP_05994927.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261740971|gb|EEY28897.1| transcriptional regulator [Brucella suis bv. 5 str. 513] Length = 126 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G R++++R+ TQKEMA + ++ E+G + + + I +D Sbjct: 4 FGKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE 62 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHL 169 G RL+ +R+++G++Q E + L + + LS E GR P ++I Sbjct: 1 MTPFGKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIW 60 Query: 170 DW 171 D Sbjct: 61 DE 62 >gi|300774480|ref|ZP_07084343.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300506295|gb|EFK37430.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 209 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 GT IK IR+ +QK A + ++ +E G I L + + + ++ D + Sbjct: 4 FGTNIKKIRQVKGLSQKAFADLFDLNRGVISSYEEGRAEPKIETILKVASHFNLNLDQLL 63 Query: 92 D 92 Sbjct: 64 T 64 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G +K IR+ KG+SQ F L + +S+YE+GR P+I+ K+ +LD Sbjct: 1 MSFFGTNIKKIRQVKGLSQKAFADLFDLNRGVISSYEEGRAEPKIETILKVASHFNLNLD 60 Query: 171 WIYFG 175 + Sbjct: 61 QLLTE 65 >gi|225018551|ref|ZP_03707743.1| hypothetical protein CLOSTMETH_02500 [Clostridium methylpentosum DSM 5476] gi|224948683|gb|EEG29892.1| hypothetical protein CLOSTMETH_02500 [Clostridium methylpentosum DSM 5476] Length = 118 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 23/71 (32%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +RK TQ + VN E G S + E+ ++ W+ +G Sbjct: 5 DNIKQLRKQLELTQTAFGERLGVSRNVVNNLELGRVDPSDLVIKSICREFNVNSLWLLEG 64 Query: 94 EVIDRRYEDVT 104 + Sbjct: 65 KGEMFSGYADD 75 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K +RK ++Q FG+ LG+ + ++N E GR P + I + + W Sbjct: 1 MQTADNIKQLRKQLELTQTAFGERLGVSRNVVNNLELGRVDPSDLVIKSICREFNVNSLW 60 Query: 172 IYFGDEVI 179 + G + Sbjct: 61 LLEGKGEM 68 >gi|163782866|ref|ZP_02177862.1| hypothetical protein HG1285_16061 [Hydrogenivirga sp. 128-5-R1-1] gi|159881987|gb|EDP75495.1| hypothetical protein HG1285_16061 [Hydrogenivirga sp. 128-5-R1-1] Length = 71 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ +Q+E A + E G +Y+ +++SF W+ Sbjct: 2 VGERVRKLREEKGLSQEEFARRIGIPVDRLREIEEGRLEPCDATLVYISKLFDVSFWWLK 61 Query: 92 DGEVI 96 +G Sbjct: 62 EGRKE 66 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R++ +R++KG+SQ EF + +G+P L E+GR P I ++ W+ Sbjct: 1 MVGERVRKLREEKGLSQEEFARRIGIPVDRLREIEEGRLEPCDATLVYISKLFDVSFWWL 60 Query: 173 YFGDEVIVP 181 G + + Sbjct: 61 KEGRKEVAE 69 >gi|160915810|ref|ZP_02078018.1| hypothetical protein EUBDOL_01825 [Eubacterium dolichum DSM 3991] gi|158432286|gb|EDP10575.1| hypothetical protein EUBDOL_01825 [Eubacterium dolichum DSM 3991] Length = 171 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I+++RKA +Q+E+AI N + V+ +E + + L E + S + Sbjct: 4 ENIRNLRKAKGLSQEELAIKLNVVRQTVSKWEKSLSVPDSSMLVSLAEELDTSVSTLLGE 63 Query: 94 EVIDRRYEDVT 104 + + + Sbjct: 64 TIQEEGLNEKD 74 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + ++++RK KG+SQ E L + T+S +E+ ++P+ + + + + Sbjct: 1 MLNENIRNLRKAKGLSQEELAIKLNVVRQTVSKWEKSLSVPDSSMLVSLAEELDTSVSTL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKK 195 E I + + SKK Sbjct: 61 LG--ETIQEEGLNEKDLKNISKK 81 >gi|147724743|gb|ABQ45979.1| repressor [Linear cloning vector pJAZZ-OC] Length = 198 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 22/71 (30%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K R T K++A V E G S+ L L WI Sbjct: 5 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQWILY 64 Query: 93 GEVIDRRYEDV 103 G D V Sbjct: 65 GTESDPDRVPV 75 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RLK+ R + ++ + + +G+ + N E+G +P ++ + + +K + Sbjct: 1 MKTRGERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQ 60 Query: 171 WIYFGDEVIVPKS 183 WI +G E + Sbjct: 61 WILYGTESDPDRV 73 >gi|121609979|ref|YP_997786.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554619|gb|ABM58768.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 208 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 23/64 (35%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + VG I+++R T +++ A ++ E G + + ++ Sbjct: 20 LEESVGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMAGLDTLARIARTLGVAM 79 Query: 88 DWIY 91 ++ Sbjct: 80 SALF 83 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY--FG 175 ++ +R +G++ + + G+ LS E G T+ + +I + + ++ + Sbjct: 28 IRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMAGLDTLARIARTLGVAMSALFGKYD 87 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + +KR G + ++ K S Sbjct: 88 ASAAMAQHVKRGAGMEVVRRGTKSGHS 114 >gi|104783607|ref|YP_610105.1| hypothetical protein PSEEN4650 [Pseudomonas entomophila L48] gi|95112594|emb|CAK17322.1| conserved hypothetical protein; putative DNA-binding [Pseudomonas entomophila L48] Length = 360 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 4/90 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K R A + + + + + +E+ S + L + ++ + Sbjct: 2 IGERLKRARAAAGLSMQALGDQVGVSANMIKKYEHDQSMPSSGVLVRLCKALSVRAEYFF 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + + A LK I Sbjct: 62 RPAKVELAGVEYRKR----CSTPKAILKRI 87 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG RLK R G+S G +G+ + + YE +++P ++ + ++ Sbjct: 1 MIGERLKRARAAAGLSMQALGDQVGVSANMIKKYEHDQSMPSSGVLVRLCKALSVRAEYF 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + +V + R + + K+ + Sbjct: 61 FRPAKVELAGVEYRKRCSTPKAILKRIE 88 >gi|329888188|ref|ZP_08266786.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846744|gb|EGF96306.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 65 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+K +R N TQ+++ AVN E S+ A + +E + I++ Sbjct: 3 NRLKLLRVERNWTQEQLGQALGVSRQAVNALETEKHDPSLDLAYRIAALFERPVEDIFE 61 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 32/60 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + G+ LG+ ++ E + P + A +I + ++ ++ I+ Sbjct: 1 MKNRLKLLRVERNWTQEQLGQALGVSRQAVNALETEKHDPSLDLAYRIAALFERPVEDIF 60 >gi|323693418|ref|ZP_08107631.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum WAL-14673] gi|323502526|gb|EGB18375.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum WAL-14673] Length = 180 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V I+ +R+ N + E++ + +S + E G + +I + N ++ FD + Sbjct: 5 VAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDAL 63 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ +R++ +S E +L G+ S L+ E+G P I KI K D + Sbjct: 7 KNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDAL 63 >gi|312977554|ref|ZP_07789302.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|310895985|gb|EFQ45051.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 76 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G R+K RK + TQ+ + ++ + +E+G+ R L ++ D Sbjct: 8 EKFGRRLKRFRKNKHYTQERLGREVYVSDTTIGRYEHGISMPDKRMVYELAQVLGVTPDQ 67 Query: 90 IYDGEVIDR 98 + E + Sbjct: 68 LLGLESKEE 76 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D G RLK RK+K +Q G+ + + ++T+ YE G ++P+ + ++ QV Sbjct: 6 DVEKFGRRLKRFRKNKHYTQERLGREVYVSDTTIGRYEHGISMPDKRMVYELAQVLGVTP 65 Query: 170 DWIY 173 D + Sbjct: 66 DQLL 69 >gi|332654336|ref|ZP_08420080.1| conserved domain protein [Ruminococcaceae bacterium D16] gi|332517422|gb|EGJ47027.1| conserved domain protein [Ruminococcaceae bacterium D16] Length = 87 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 38/80 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +R+ +G++Q + G+L+G ++ E + P I A I +V + ++ ++ Sbjct: 1 MKNRIKELREQRGLTQEQLGELVGASRQAINAIETEKFEPSIWLAYDISKVFECAIEEVF 60 Query: 174 FGDEVIVPKSIKRAKGNQSS 193 D + ++ S Sbjct: 61 LFDVSLRKSRADSSRQEVKS 80 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RIK++R+ TQ+++ A+N E SI A + +E + + ++ Sbjct: 3 NRIKELREQRGLTQEQLGELVGASRQAINAIETEKFEPSIWLAYDISKVFECAIEEVF 60 >gi|226947977|ref|YP_002803068.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] gi|226842052|gb|ACO84718.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] Length = 182 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N + +++ + + ++ E G + +I + N ++++ + Sbjct: 7 ISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKLI 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 D + D + K+ Sbjct: 67 DSPMEDAVVIHKVHTKKQ 84 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 A LK +R D+ +S + +L G+ LS E+G + P I KI + + Sbjct: 9 ANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKLIDS 68 Query: 174 -FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D V++ K + + ++ ++NP Sbjct: 69 PMEDAVVIHKVHTKKQSENTNSFISYCYYTTNP 101 >gi|213019728|ref|ZP_03335533.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994769|gb|EEB55412.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 300 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 1/97 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG ++K+ R TQK++A + +E G SI + IS + Sbjct: 8 EVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEALSISITDL 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 E + Y + +RK + Sbjct: 68 IPISKSCLEDEGEEILNLVREYKKIND-QELRKMFCL 103 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 32/83 (38%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 I ++ + +G +IK+ R TQK++A N ++ +E G + + + Sbjct: 149 IEEKVGSIYCQIGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRTAVPLDKLYEMA 208 Query: 81 NEYEISFDWIYDGEVIDRRYEDV 103 I+ + + E+ Sbjct: 209 EALSINITDLLIEKDEGSTVENE 231 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 7/125 (5%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 +S D I + E + K IG ++K R + +Q + + + + Sbjct: 131 GVSVD-IVSQAIGLSADECIEEKVGSIYCQIGKKIKEWRLVREYTQKDLAEKMNTTRDEI 189 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD------EVIVPKSIKRAKGNQSSKKSK 197 SNYEQGRT + ++ + ++ + E +P IK K +S + Sbjct: 190 SNYEQGRTAVPLDKLYEMAEALSINITDLLIEKDEGSTVENELPDLIKEYKEIESQELRN 249 Query: 198 KDKKS 202 KS Sbjct: 250 ALIKS 254 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +K LD +G ++K+ R ++G +Q + + +G+ + YE+G I+ I + Sbjct: 2 EKSLDC-EVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEAL 60 Query: 166 KKHLDWIY 173 + + Sbjct: 61 SISITDLI 68 >gi|110598195|ref|ZP_01386472.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Chlorobium ferrooxidans DSM 13031] gi|110340209|gb|EAT58707.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Chlorobium ferrooxidans DSM 13031] Length = 241 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRIK +R Q+E + V+ EN T + + E+ ++ +W+ Sbjct: 7 LGTRIKSVRDHFGLRQEEFGEKIGLSGNRVSEIENDKGGTKASVLISICQEFPLNPEWLL 66 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 GE + + + + L+ + Sbjct: 67 SGEGSMLKKPEESGISPDEFSRRITLLEKQMQQ 99 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS+R G+ Q EFG+ +G+ + +S E + + I Q + +W+ G+ Sbjct: 11 IKSVRDHFGLRQEEFGEKIGLSGNRVSEIENDKGGTKASVLISICQEFPLNPEWLLSGEG 70 Query: 178 VIVPKSIKRAKGNQSSKKS 196 ++ K + + Sbjct: 71 SMLKKPEESGISPDEFSRR 89 >gi|15485441|emb|CAC67535.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 232 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQK++A A + +E G+ S L ++S + + Sbjct: 5 EKLKARRKELKLTQKDIADQLGISYQAYSAWERGIKEPSKEKVNRLEQLLKVSKGYFTEI 64 Query: 94 EVIDRRYEDVTNKKRL 109 E++ K Sbjct: 65 EIVRLYNTLSNKGKNQ 80 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ RK+ ++Q + LG+ S +E+G P + +++Q+ K + Sbjct: 1 MYQPEKLKARRKELKLTQKDIADQLGISYQAYSAWERGIKEPSKEKVNRLEQLLKVSKGY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + E++ + KG + +D Sbjct: 61 -FTEIEIVRLYNTLSNKGKNQVVEYARD 87 >gi|134298755|ref|YP_001112251.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051455|gb|ABO49426.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 77 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G + +R+A N +Q+++ + +S+++ E G + + + L +S + Sbjct: 6 IGENVIKLREAKNWSQQDLEEASKVPQSSISRIEKGLLRNPGVETVRKLATALNVSVAEL 65 Query: 91 YDGEV 95 + E Sbjct: 66 LEEET 70 Score = 47.6 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKK 167 + IG + +R+ K SQ + + +P S++S E+G P ++ RK+ Sbjct: 1 MLLMGIGENVIKLREAKNWSQQDLEEASKVPQSSISRIEKGLLRNPGVETVRKLATALNV 60 Query: 168 HLDWIYFGD 176 + + + Sbjct: 61 SVAELLEEE 69 >gi|325954495|ref|YP_004238155.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922] gi|323437113|gb|ADX67577.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922] Length = 113 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+++ R+A N +Q+++A + + + +E SI L +E + ++ Sbjct: 4 FGKRLREAREAKNLSQQDLAKLIGSVHTVIGRYERDEMKPSIDVVKRLADELGTTVGYLI 63 Query: 92 DGEVIDRRYEDVT 104 + +D T Sbjct: 64 GEAKEAQFLKDPT 76 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RL+ R+ K +SQ + KL+G ++ + YE+ P I +++ + Sbjct: 1 MVTFGKRLREAREAKNLSQQDLAKLIGSVHTVIGRYERDEMKPSIDVVKRLADELGTTVG 60 Query: 171 WIYFGDEVIV----PKSIKRAKGNQSSKKSKKD 199 ++ + P +KR + + K+ Sbjct: 61 YLIGEAKEAQFLKDPTMLKRFQEIDQLTEKDKE 93 >gi|313667112|gb|ADR73004.1| C.BspHIP [Bacillus sp. H(2010)] Length = 71 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + +G++IK +RK+ +Q+++A + + + ENG + SI + IS Sbjct: 5 FLESLGSKIKILRKSRGVSQEDLAKQSEITRTYLTQIENGKVNPSIGKIKKISENLNISL 64 Query: 88 DWIYDG 93 ++ Sbjct: 65 CEMFKD 70 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K +RK +G+SQ + K + + L+ E G+ P I +KI + L ++ Sbjct: 13 IKILRKSRGVSQEDLAKQSEITRTYLTQIENGKVNPSIGKIKKISENLNISLCEMFKD 70 >gi|302336013|ref|YP_003801220.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319853|gb|ADK68340.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 109 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K +RK T +EMA +E G+ SI + + +++ D + Sbjct: 3 QLKRLRKERGMTAREMAAKLGMKADTYGKWEYGVNGMSIENVCAVADVLDVTLDELV 59 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +LK +RK++GM+ E LGM T +E G I+ + V LD + Sbjct: 3 QLKRLRKERGMTAREMAAKLGMKADTYGKWEYGVNGMSIENVCAVADVLDVTLDELV 59 >gi|289449795|ref|YP_003474502.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184342|gb|ADC90767.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I +RK + TQ+E+A + E G S+ A + +++S + I+ E Sbjct: 5 ISQLRKQHKITQEELANEVGVTRQTITSIETGKYIASLPLAFKIAKFFDMSIEEIFSIEE 64 Query: 96 ID 97 D Sbjct: 65 DD 66 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + +RK ++Q E +G+ T+++ E G+ I + A KI + ++ I+ Sbjct: 1 MKNTISQLRKQHKITQEELANEVGVTRQTITSIETGKYIASLPLAFKIAKFFDMSIEEIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 SIEED 65 >gi|257874662|ref|ZP_05654315.1| predicted protein [Enterococcus casseliflavus EC10] gi|257808826|gb|EEV37648.1| predicted protein [Enterococcus casseliflavus EC10] Length = 208 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 40/78 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K+ R AN+ TQ+E+A + + +++ +E G S + + + IS + + Sbjct: 6 LSIKLKEYRIANSLTQQELAEILDVSDKSISKWELGDTYPSKKNVIKISELLGISIEILL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 E+++ R ++ + + Sbjct: 66 IEEIVEDRQKENKLIRYI 83 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK R ++Q E ++L + + ++S +E G T P K KI ++ ++ + E Sbjct: 10 LKEYRIANSLTQQELAEILDVSDKSISKWELGDTYPSKKNVIKISELLGISIEILLI--E 67 Query: 178 VIVPKSIKRAK 188 IV K K Sbjct: 68 EIVEDRQKENK 78 >gi|269958009|ref|YP_003327798.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306690|gb|ACZ32240.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 66 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + R G SQ E K LG+ T+ + E+GR P + A +I +V ++ ++ Sbjct: 3 NDVAARRAAHGWSQAELAKRLGVSRQTVISIERGRFDPSLPLAFRIARVFDARIEEVF 60 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 + R A+ +Q E+A V E G S+ A + ++ + ++D Sbjct: 5 VAARRAAHGWSQAELAKRLGVSRQTVISIERGRFDPSLPLAFRIARVFDARIEEVFD 61 >gi|161620977|ref|YP_001594863.1| hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365] gi|254703244|ref|ZP_05165072.1| hypothetical protein Bsuib36_04804 [Brucella suis bv. 3 str. 686] gi|260567822|ref|ZP_05838291.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261753875|ref|ZP_05997584.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|161337788|gb|ABX64092.1| Hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365] gi|260154487|gb|EEW89568.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261743628|gb|EEY31554.1| transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 182 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 26/51 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 D+G R++ +R N +Q+E+A A S ++L E + S+ + + Sbjct: 4 DIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD 54 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ +R + +SQ E K G+ NST+S E ++ P + ++I Sbjct: 9 LRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRI 52 >gi|153939244|ref|YP_001391349.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152935140|gb|ABS40638.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295319378|gb|ADF99755.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 71 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +RK+ M Q E KL+G+ T+ + E + P +K A I +V K ++ ++ Sbjct: 12 IHELRKEHNMKQEELAKLVGVRRETIGHLENEKYNPSLKLAMDIAKVFGKPVEEVF 67 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + T+I ++RK +N Q+E+A + EN + S++ A+ + + + Sbjct: 5 MPQLKTKIHELRKEHNMKQEELAKLVGVRRETIGHLENEKYNPSLKLAMDIAKVFGKPVE 64 Query: 89 WIYD 92 ++ Sbjct: 65 EVFQ 68 >gi|149276668|ref|ZP_01882811.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39] gi|149232337|gb|EDM37713.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39] Length = 105 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + K V I+ IR+ N TQ+ +A+ N ++A + E G SI + E+ Sbjct: 16 ERRPKIVADNIRKIREFRNYTQEYIAMKLNISQNAYSKLELGYSKISIDRLFQIAELLEV 75 Query: 86 SFDWIYDGEVID 97 + E + Sbjct: 76 DAGELVSYESAE 87 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ IR+ + +Q L + + S E G + I +I ++ + + + Sbjct: 25 NIRKIREFRNYTQEYIAMKLNISQNAYSKLELGYSKISIDRLFQIAELLEVDAGELVSYE 84 >gi|47095795|ref|ZP_00233400.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|254899216|ref|ZP_05259140.1| transcription regulator [Listeria monocytogenes J0161] gi|254912643|ref|ZP_05262655.1| DNA-binding protein [Listeria monocytogenes J2818] gi|254936970|ref|ZP_05268667.1| DNA-binding protein [Listeria monocytogenes F6900] gi|47015799|gb|EAL06727.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|258609573|gb|EEW22181.1| DNA-binding protein [Listeria monocytogenes F6900] gi|293590638|gb|EFF98972.1| DNA-binding protein [Listeria monocytogenes J2818] Length = 423 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+IRK T K++A G + ENG+ S+ +++ +I + + Sbjct: 4 IGLRIKNIRKEKKLTLKDVAQGI-ISVPYLANIENGIKVASLETLIHIARRLDIPEEILL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E + R + + LK I Sbjct: 63 MSEDEENRALLKELDEIFELLVCSN-LKEI 91 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+IRK+K ++ + + + + L+N E G + ++ I + + + ++ Sbjct: 8 IKNIRKEKKLTLKDVAQGI-ISVPYLANIENGIKVASLETLIHIARRLDIPEEILLMSED 66 Query: 178 VIVPKSIKRAK--------GNQSSKKSKKDKKSSN 204 +K N +S+ +K + N Sbjct: 67 EENRALLKELDEIFELLVCSNLKEIESRLEKIAEN 101 >gi|310816677|ref|YP_003964641.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308755412|gb|ADO43341.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 119 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E G S + + S + Y Sbjct: 9 VGKRIRQRRWLIGMTQQQLAEHVGIKFQQIQKYETGANRVSASRLWEIAHALGTSISYFY 68 Query: 92 DGEVIDRRYEDVTNKK 107 +G + N++ Sbjct: 69 EGMNAAATEDSTLNEE 84 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R++ R GM+Q + + +G+ + YE G +I + + Sbjct: 8 YVGKRIRQRRWLIGMTQQQLAEHVGIKFQQIQKYETGANRVSASRLWEIAHALGTSISYF 67 Query: 173 YFG 175 Y G Sbjct: 68 YEG 70 >gi|282882172|ref|ZP_06290811.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|281297937|gb|EFA90394.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] Length = 235 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 2/90 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ R NN T KE++ SA+ +ENG + + + + Sbjct: 3 LGEKIRKYRILNNLTMKELSEKLGMSISAIQKYENGTVIPKTDIIQKISKILNVPINKLL 62 Query: 92 DGE--VIDRRYEDVTNKKRLDPYAIGARLK 119 + D+ + L Y +K Sbjct: 63 EETSAKNDKEDMILEKIIELTKYDQIKWIK 92 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 7/100 (7%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ R ++ E + LGM S + YE G IP+ +KI ++ ++ Sbjct: 1 MTLGEKIRKYRILNNLTMKELSEKLGMSISAIQKYENGTVIPKTDIIQKISKILNVPINK 60 Query: 172 IYFG-------DEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + +++I+ K I+ K +Q +DK N Sbjct: 61 LLEETSAKNDKEDMILEKIIELTKYDQIKWIKCEDKDIKN 100 >gi|222080150|ref|YP_002540013.1| transcriptional regulator [Agrobacterium vitis S4] gi|221738795|gb|ACM39574.1| transcriptional regulator [Agrobacterium vitis S4] Length = 146 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 27/76 (35%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RIK R+ +Q ++A V ++ G + + + F + Sbjct: 20 EVGERIKARRRILGMSQGKLAEALGVTFQQVQKYKKGKNRVGASRLQNVATIFGVPFSYF 79 Query: 91 YDGEVIDRRYEDVTNK 106 + + + +N Sbjct: 80 FPDQSSGTEGDITSNP 95 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+K+ R+ GMSQ + + LG+ + Y++G+ + + + + Sbjct: 19 IEVGERIKARRRILGMSQGKLAEALGVTFQQVQKYKKGKNRVGASRLQNVATIFGVPFSY 78 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + I G + Sbjct: 79 FFPDQSSGTEGDITSNPGKE 98 >gi|218681208|ref|ZP_03529105.1| putative transcriptional regulator protein [Rhizobium etli CIAT 894] Length = 170 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + TS + E + + + + VG +I+ R +N + ++ G V +E+ Sbjct: 18 VRTSRPAQAEQSNVARELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYES 77 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 G S L N +I ++G + +D R+ Sbjct: 78 GKNRVSASMLYELANCLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRR 134 Score = 41.5 bits (96), Expect = 0.070, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ R +S + G +G+ + YE G+ ++ K + + G Sbjct: 45 QQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEG 104 >gi|254474601|ref|ZP_05087987.1| DNA-binding protein [Ruegeria sp. R11] gi|214028844|gb|EEB69679.1| DNA-binding protein [Ruegeria sp. R11] Length = 189 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 8/70 (11%), Positives = 25/70 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK+ + T ++A + ++ E SI + ++ ++ Sbjct: 11 LGADLRALRKSRSLTLTDLAARLGRSVGWLSQVERDKSEPSISDLRAIAKCLDVPMSMLF 70 Query: 92 DGEVIDRRYE 101 + Sbjct: 71 AHSASPADEQ 80 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A L+++RK + ++ + LG LS E+ ++ P I R I + + ++ Sbjct: 13 ADLRALRKSRSLTLTDLAARLGRSVGWLSQVERDKSEPSISDLRAIAKCLDVPMSMLF 70 >gi|254414584|ref|ZP_05028349.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178432|gb|EDX73431.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] Length = 165 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 8/139 (5%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE----ISFD 88 GT +K + +A +Q ++A+ S++N + N L +R ++ + Sbjct: 5 GTVLKQVLEAYGISQNKLAVAMGIGRSSINRWVNENRDPGGDAILEIRKGLNTINPVAAE 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + + R G L+ + + +SQ + +G+ ST+ ++ Sbjct: 65 EFIGLYLDESFASGTIETMR----KAGKSLRQVLEAYNISQNKLAIAMGIGRSTIHHWVN 120 Query: 149 GRTIPEIKPARKIKQVTKK 167 P +I++ K Sbjct: 121 ESRDPGGDAILEIRKGLNK 139 Score = 41.9 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G ++ + +A N +Q ++AI S ++ + N L +R Sbjct: 81 ETMRKAGKSLRQVLEAYNISQNKLAIAMGIGRSTIHHWVNESRDPGGDAILEIRKGLN 138 >gi|261407406|ref|YP_003243647.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283869|gb|ACX65840.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 201 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Query: 20 IITPEIRQYWKDV----GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 + + E+ Q+ K + +K +R+ + ++A ++ + E G S SI Sbjct: 8 MYSIEVNQHLKPINLILANNLKILREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITT 67 Query: 76 ALYLRNEYEISFDWIYD 92 + N ++SF + + Sbjct: 68 VWKIANGLKLSFSSLIN 84 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + +V + + LK +R+ + +S + ++ G+ + L E+G + P Sbjct: 5 TYNMYSIEVNQHLKPINLILANNLKILREQRKLSLDKVAEMTGISKTMLGQIERGESSPS 64 Query: 155 IKPARKIKQVTKKHLDWIY 173 I KI K + Sbjct: 65 ITTVWKIANGLKLSFSSLI 83 >gi|149179178|ref|ZP_01857746.1| transcriptional regulator, XRE family protein [Planctomyces maris DSM 8797] gi|148841996|gb|EDL56391.1| transcriptional regulator, XRE family protein [Planctomyces maris DSM 8797] Length = 160 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 EI+++ VG +I RKA +Q+ ++ +S ++ E+G S S + Sbjct: 88 GEEIQKWMNFVGKKIHRYRKAAKMSQEVLSEKTGLPQSHISRLESGKHSPSNATLKKIAA 147 Query: 82 EYEISF 87 +I Sbjct: 148 ALDIEI 153 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +G ++ RK MSQ + G+P S +S E G+ P +KI + Sbjct: 95 MNFVGKKIHRYRKAAKMSQEVLSEKTGLPQSHISRLESGKHSPSNATLKKIAAALDIEI 153 >gi|145308137|gb|ABP57323.1| hypothetical protein bst056 [Bacteroides uniformis] Length = 155 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDWIY 91 G RI D+ N+ TQKE+A S ++ +G + S + + E+++S D+I Sbjct: 15 GQRISDLCNGNHITQKELAEKIGVSASQLSRIVSGETRTVSSDILIGVAKEFKVSTDYIL 74 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 G R+ + ++Q E + +G+ S LS G T + + K D+I Sbjct: 14 PGQRISDLCNGNHITQKELAEKIGVSASQLSRIVSGETRTVSSDILIGVAKEFKVSTDYI 73 Query: 173 Y 173 Sbjct: 74 L 74 >gi|126698483|ref|YP_001087380.1| putative phage regulatory protein [Clostridium difficile 630] gi|115249920|emb|CAJ67740.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 110 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++++RK TQ E+A N S + + E L +++S D++ Sbjct: 4 NRLRELRKQKGLTQMELAKLLNCSLSKIAMLETDKRDPVKEDLLRFSEIFDVSIDYLLGK 63 Query: 94 EVIDRRYEDVTNKKR 108 +D + ++ Sbjct: 64 NNLDLNPQLNKEMEQ 78 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 40/91 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL+ +RK KG++Q+E KLL S ++ E + P + + ++ +D++ Sbjct: 1 MFSNRLRELRKQKGLTQMELAKLLNCSLSKIAMLETDKRDPVKEDLLRFSEIFDVSIDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + + + + + K D+++ Sbjct: 61 LGKNNLDLNPQLNKEMEQALHKLYSLDEENR 91 >gi|13095660|ref|NP_076781.1| repressor [Lactococcus phage bIL311] gi|15673929|ref|NP_268104.1| prophage ps3 protein 15 [Lactococcus lactis subsp. lactis Il1403] gi|12724988|gb|AAK06045.1|AE006425_2 prophage ps3 protein 15 [Lactococcus lactis subsp. lactis Il1403] gi|12831082|gb|AAK08434.1|AF323672_2 repressor [Lactococcus phage bIL311] Length = 235 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK IR T +E + + V+ +E G+ + + + + S ++I Sbjct: 7 DIGQRIKSIRTKKGMTLEEFGALFSAGKGLVSRWERGISTPNPERIKAISKVGDTSVEYI 66 Query: 91 YDGEVIDRRYEDVTNKKR 108 G + + + + Sbjct: 67 LHGTMNEYIESLIDKLQM 84 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+KSIR KGM+ EFG L +S +E+G + P + + I +V +++I G Sbjct: 10 QRIKSIRTKKGMTLEEFGALFSAGKGLVSRWERGISTPNPERIKAISKVGDTSVEYILHG 69 Query: 176 D-EVIVPKSIKRAKGNQSSKKS 196 + I + + + S+ K+ Sbjct: 70 TMNEYIESLIDKLQMDLSTDKN 91 >gi|86140054|ref|ZP_01058618.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85823304|gb|EAQ43515.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 462 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 29/90 (32%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R TQK+ A +N EN S L L E+ + + Sbjct: 9 GAKLREMRTRLELTQKDFATKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELST 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + L +R Sbjct: 69 GDSERLVSDMREAMADPVFADETPPLADLR 98 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 28/76 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ +R ++Q +F LG+ L+ E + Q + Sbjct: 6 LYAGAKLREMRTRLELTQKDFATKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTE 65 Query: 172 IYFGDEVIVPKSIKRA 187 + GD + ++ A Sbjct: 66 LSTGDSERLVSDMREA 81 >gi|329851805|ref|ZP_08266486.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328839654|gb|EGF89227.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+ +R + G++Q + LG+ + E + IP + A KI V + ++ I+ Sbjct: 1 MKQYLRELRTEMGLTQADLAAKLGVSRQAVIALETDKHIPSLDLAYKISAVFDRPVESIF 60 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++++R TQ ++A AV E S+ A + ++ + I++ Sbjct: 5 LRELRTEMGLTQADLAAKLGVSRQAVIALETDKHIPSLDLAYKISAVFDRPVESIFENPY 64 Query: 96 ID 97 Sbjct: 65 RP 66 >gi|307354843|ref|YP_003895894.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307158076|gb|ADN37456.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 77 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++R TQ+E+A + + E G + S+ A L + + + ++ Sbjct: 3 NRIKELRNERGVTQQELAEKVDVSSRTIISLEKGQYNPSVLLAHKLAVFFNCAIEEVFIF 62 Query: 94 EVIDRRYEDVTNKKR 108 D D N ++ Sbjct: 63 GKEDGIRGDADNSEQ 77 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW-IYF 174 R+K +R ++G++Q E + + + + T+ + E+G+ P + A K+ ++ F Sbjct: 3 NRIKELRNERGVTQQELAEKVDVSSRTIISLEKGQYNPSVLLAHKLAVFFNCAIEEVFIF 62 Query: 175 GDEV 178 G E Sbjct: 63 GKED 66 >gi|307292240|ref|ZP_07572104.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496746|gb|EFM66299.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 270 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + VG RI+ IR+ + ++ S VN +E G+ + ++ + Sbjct: 6 QAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIGHVTNE 65 Query: 89 WIYDGEVIDRRYEDVTNKK 107 ++ G ++ ++ KK Sbjct: 66 YLLYGTQENQYILEMLQKK 84 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D A+G R++ IR++ +S +FGKL+G +P ST++N+E+G +P+ + +I ++ Sbjct: 1 MEIDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIG 60 Query: 166 KKHLDWIYFGDEV 178 +++ +G + Sbjct: 61 HVTNEYLLYGTQE 73 >gi|300783560|ref|YP_003763851.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793074|gb|ADJ43449.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 474 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 39/117 (33%), Gaps = 3/117 (2%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R++ +R++ + +Q ++A S +N E+ ++ L + + + + + Sbjct: 7 GARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGVDTE--FF 64 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL-GMPNSTLSNYEQ 148 R + LD + + + L + S + E Sbjct: 65 ANNDTSRLVADVKEALLDEALGIDVTTGELNELATNLPAIAQALVKLHRSYRNAVEN 121 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ GARL+ +R+ + MSQ + ++L + S L+ E + +I Q Sbjct: 1 MEKTFAGARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRA 187 ++ D + +K A Sbjct: 61 TEFFANNDTSRLVADVKEA 79 >gi|294497869|ref|YP_003561569.1| putative transcriptional regulator SinR [Bacillus megaterium QM B1551] gi|294347806|gb|ADE68135.1| probable transcriptional regulator SinR [Bacillus megaterium QM B1551] Length = 111 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDWI 90 +G +IK++R + +A AN +S ++ E G+ + S++ + + + D + Sbjct: 2 IGEKIKNLRLKKGYSITRLAEEANISKSYLSHLEKGLNNNPSLQMLDKIASSLHTTIDEL 61 Query: 91 YDGE 94 +G+ Sbjct: 62 IEGD 65 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R KG S + + S LS+ E+G P ++ KI +D Sbjct: 1 MIGEKIKNLRLKKGYSITRLAEEANISKSYLSHLEKGLNNNPSLQMLDKIASSLHTTIDE 60 Query: 172 IYFGD 176 + GD Sbjct: 61 LIEGD 65 >gi|291562582|emb|CBL41398.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] Length = 266 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 2/103 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++ N +SA+ +E S + L Y ++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLEEQVNLSKSALGSYEAKDFKDISHYAIIKLAKFYGVTADYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 RL + LKS R D + Sbjct: 65 LGLSQTRNHPNADIADLRLSD-DMIELLKSGRVDNSLLCELAA 106 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE-QGRTIPEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + + S L +YE + K+ + D Sbjct: 3 LSIQERLKDLRVERGLTLEQLEEQVNLSKSALGSYEAKDFKDISHYAIIKLAKFYGVTAD 62 Query: 171 WIY 173 ++ Sbjct: 63 YLL 65 >gi|291520893|emb|CBK79186.1| Predicted transcriptional regulator with C-terminal CBS domains [Coprococcus catus GD/7] Length = 87 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ R A Q+++A + + + + E G S+ + + N +S D + Sbjct: 6 IGKNIRKFRLARKLRQEDLAEKTDLTTNYIGMVERGEKIPSLETFIKIVNALGVSSDMVL 65 Query: 92 DG 93 Sbjct: 66 TD 67 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IG ++ R + + Q + + + + + E+G IP ++ KI Sbjct: 1 MKLDTIGKNIRKFRLARKLRQEDLAEKTDLTTNYIGMVERGEKIPSLETFIKIVNALGVS 60 Query: 169 LDWIYFG 175 D + Sbjct: 61 SDMVLTD 67 >gi|291483679|dbj|BAI84754.1| hypothetical protein BSNT_01998 [Bacillus subtilis subsp. natto BEST195] Length = 123 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + ++R+ ++ +A S +E G+ + + N Y ++ D+I Sbjct: 6 GKVLTELREKKGWSKSLVAKKLGLKTMSTYANWEYGLRKPDGEMLVKIANLYGVTTDYIL 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 G+ + D+ L Sbjct: 66 TGKRPNSFNSDLFEDPDL 83 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 L +R+ KG S+ K LG+ ST +N+E G P+ + KI + D+I Sbjct: 7 KVLTELREKKGWSKSLVAKKLGLKTMSTYANWEYGLRKPDGEMLVKIANLYGVTTDYILT 66 Query: 175 GD 176 G Sbjct: 67 GK 68 >gi|242372638|ref|ZP_04818212.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349693|gb|EES41294.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G +Q + K G+ T+S E+ P I A KI ++ + ++ I+ Sbjct: 1 MRNRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAIKIAKIFNEPVENIF 60 Query: 174 FGDE 177 +E Sbjct: 61 IIEE 64 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q ++A A V+L E + SI A+ + + + I+ Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAIKIAKIFNEPVENIFII 62 Query: 94 EVID 97 E D Sbjct: 63 EEGD 66 >gi|229008248|ref|ZP_04165756.1| transcriptional regulator [Bacillus mycoides Rock1-4] gi|228753010|gb|EEM02540.1| transcriptional regulator [Bacillus mycoides Rock1-4] Length = 171 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 MSQ + + + + ++SN+E R P+I + + LD + GD I+ + +++ Sbjct: 1 MSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDLVKGDVKIMKEELQK 60 Query: 187 A 187 + Sbjct: 61 S 61 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 +Q+++A + +++ +EN I L + + +S D + G+V + E Sbjct: 1 MSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDLVKGDVKIMKEELQK 60 Query: 105 N 105 + Sbjct: 61 S 61 >gi|223043346|ref|ZP_03613392.1| conserved domain protein [Staphylococcus capitis SK14] gi|314934995|ref|ZP_07842354.1| putative transcriptional regulator [Staphylococcus caprae C87] gi|222443135|gb|EEE49234.1| conserved domain protein [Staphylococcus capitis SK14] gi|313652925|gb|EFS16688.1| putative transcriptional regulator [Staphylococcus caprae C87] Length = 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G +Q + K G+ T+S E+ P I A KI ++ + ++ I+ Sbjct: 1 MRNRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAIKIARIFNEPVENIF 60 Query: 174 FGDE 177 +E Sbjct: 61 IIEE 64 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q ++A A V+L E + SI A+ + + + I+ Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAIKIARIFNEPVENIFII 62 Query: 94 EVID 97 E D Sbjct: 63 EEGD 66 >gi|77920536|ref|YP_358351.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77546619|gb|ABA90181.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 197 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 24 EIRQYWK--DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 +IR+ K +G +I+ +R+ T + ++ + ++ EN + L + Sbjct: 3 DIREEVKGLQIGFKIRRLRQERRMTLQNLSEATGLSKPLLSQVENEQVIPPLATLLRIAK 62 Query: 82 EYEISFDWIYDGE 94 ++ + E Sbjct: 63 ALKVGLHTFFQEE 75 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +R+++ M+ + G+ LS E + IP + +I + K L + + Sbjct: 17 IRRLRQERRMTLQNLSEATGLSKPLLSQVENEQVIPPLATLLRIAKALKVGLHTFFQEEG 76 Query: 178 VIVPKSIKRA 187 I + RA Sbjct: 77 SIEKCILVRA 86 >gi|94152474|ref|YP_581881.1| putative transcriptional regulator Cro/CI family [Cupriavidus metallidurans CH34] gi|93358844|gb|ABF12931.1| putative transcriptional regulator Cro/CI family [Cupriavidus metallidurans CH34] Length = 233 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R+ TQ E+A +S + +E+G + L +S +++ G+ Sbjct: 7 MKRARRLARLTQSEIAKRLGLSQSTYHRWESGEIEVPEAKVISLSEALGVSVEYL-RGQP 65 Query: 96 IDRRYEDVTNKKRLDPYAI 114 E + + D Sbjct: 66 EPFDIEGMDEQLPADRKNY 84 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +K R+ ++Q E K LG+ ST +E G + + +++ Sbjct: 1 MVRKNAMKRARRLARLTQSEIAKRLGLSQSTYHRWESGEIEVPEAKVISLSEALGVSVEY 60 Query: 172 I 172 + Sbjct: 61 L 61 >gi|313634912|gb|EFS01314.1| XRE family transcriptional regulator [Listeria seeligeri FSL N1-067] Length = 65 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+ Q ++A ++ E G + S+ +L + +E++ + I+ Sbjct: 3 NRVKALREEKGIAQNDLASILEVSRQTIHAIEKGKYNPSLELSLKIAKYFELTVEEIFQL 62 Query: 94 EVI 96 E Sbjct: 63 EEE 65 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 38/65 (58%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K++R++KG++Q + +L + T+ E+G+ P ++ + KI + + ++ I+ Sbjct: 1 MINRVKALREEKGIAQNDLASILEVSRQTIHAIEKGKYNPSLELSLKIAKYFELTVEEIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 QLEEE 65 >gi|308068010|ref|YP_003869615.1| transcriptional regulator yazB [Paenibacillus polymyxa E681] gi|305857289|gb|ADM69077.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus polymyxa E681] Length = 127 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ + K T+K + + G + + + + + + +S DW+ G Sbjct: 8 QRIEALIKDRGMTKKAFCEKLKISSGNLGDWRRGKTTPGTTHLIQISDFFNVSLDWLMKG 67 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 34/67 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I R++++ KD+GM++ F + L + + L ++ +G+T P +I Sbjct: 1 MGDQTIYQRIEALIKDRGMTKKAFCEKLKISSGNLGDWRRGKTTPGTTHLIQISDFFNVS 60 Query: 169 LDWIYFG 175 LDW+ G Sbjct: 61 LDWLMKG 67 >gi|291560642|emb|CBL39442.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 138 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI D+ K + TQ+E+A E++++ + +G + N + D++ Sbjct: 5 NLGGRIADLLKKSGLTQRELANKVGVTEASMSRYISGGRIPKGPTIANIANALHTTSDYL 64 Query: 91 YDGEVIDRRYEDV 103 E + + Sbjct: 65 LGTEEDITKEQKT 77 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 41/94 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+ + K G++Q E +G+ +++S Y G IP+ I Sbjct: 1 MNENNLGGRIADLLKKSGLTQRELANKVGVTEASMSRYISGGRIPKGPTIANIANALHTT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 D++ +E I + A + K+ ++ K+ Sbjct: 61 SDYLLGTEEDITKEQKTIAGIAGAVKEDREKSKT 94 >gi|253577019|ref|ZP_04854342.1| helix-turn-helix domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843629|gb|EES71654.1| helix-turn-helix domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 120 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 28/76 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ + K T+K + ++ G + S + + +++S DW+ G Sbjct: 5 ERIELLIKNAGMTKKAFCLELGISTGNFGDWKRGKSTPSTNKLIEIAAFFDVSLDWLMTG 64 Query: 94 EVIDRRYEDVTNKKRL 109 + Y + + Sbjct: 65 KEKQAEYVQDQRTEYI 80 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I R++ + K+ GM++ F LG+ ++++G++ P +I LDW Sbjct: 1 MSIYERIELLIKNAGMTKKAFCLELGISTGNFGDWKRGKSTPSTNKLIEIAAFFDVSLDW 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 + G E + S+ K Sbjct: 61 LMTGKEKQAEYVQDQRTEYISTDK 84 >gi|227501611|ref|ZP_03931660.1| hypothetical protein HMPREF0276_0214 [Corynebacterium accolens ATCC 49725] gi|227077636|gb|EEI15599.1| hypothetical protein HMPREF0276_0214 [Corynebacterium accolens ATCC 49725] Length = 94 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R+ +Q E+A + + E G S S+ AL + +E + + + I+ E Sbjct: 33 VRKWRRWREWSQGELAERVSVSRQTIANIERGNYSPSVHLALDICHELDKTVEEIFGAEQ 92 Query: 96 ID 97 D Sbjct: 93 HD 94 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D ++ R+ + SQ E + + + T++N E+G P + A I K + Sbjct: 25 DVAGQPNMVRKWRRWREWSQGELAERVSVSRQTIANIERGNYSPSVHLALDICHELDKTV 84 Query: 170 DWIYFGDE 177 + I+ ++ Sbjct: 85 EEIFGAEQ 92 >gi|261366836|ref|ZP_05979719.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282570937|gb|EFB76472.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 266 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++ N +SA+ +E S + L Y ++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLEEQVNLSKSALGSYEAKDFKDISHYAIIKLAKFYGVTADYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 G R + + + LKS R D + Sbjct: 65 L-GLSETRNHPNADLADLCLSDDMIELLKSGRVDNSLLCELAA 106 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE-QGRTIPEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + + S L +YE + K+ + D Sbjct: 3 LSIQERLKDLRVERGLTLEQLEEQVNLSKSALGSYEAKDFKDISHYAIIKLAKFYGVTAD 62 Query: 171 WIYFGDEV 178 ++ E Sbjct: 63 YLLGLSET 70 >gi|218665577|ref|YP_002425471.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517790|gb|ACK78376.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 243 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 4/79 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG----MCSTSIRYALYLRNEYEIS 86 ++ RIK K + TQ +A +++ + +G S L + Sbjct: 2 ELHERIKFAIKQSGFTQNALAEKLGISRGSISQWVSGNIATRTVPSRENLFRLAELSGVP 61 Query: 87 FDWIYDGEVIDRRYEDVTN 105 +W++ G Sbjct: 62 IEWLWSGRESAAHKPQKPE 80 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ----GRTIPEIKPARKIKQVTKK 167 + R+K K G +Q + LG+ ++S + RT+P + ++ +++ Sbjct: 1 MELHERIKFAIKQSGFTQNALAEKLGISRGSISQWVSGNIATRTVPSRENLFRLAELSGV 60 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 ++W++ G E K ++ +G+ S + + ++ Sbjct: 61 PIEWLWSGRESAAHKP-QKPEGSLSVSEYQDEE 92 >gi|194017717|ref|ZP_03056327.1| HTH-type transcriptional regulator SinR [Bacillus pumilus ATCC 7061] gi|194010617|gb|EDW20189.1| HTH-type transcriptional regulator SinR [Bacillus pumilus ATCC 7061] Length = 113 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 4/101 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK R + E+A A +S ++ E + SI++ + ++S + Sbjct: 4 IGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 91 YDGEV---IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + D + + K D G K R+ Sbjct: 64 LHEKDETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQ 104 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R +KG S E + G+ S LS+ E+ +T P I+ K+ V + + Sbjct: 6 QRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLH 65 Query: 175 GDEVIV 180 + Sbjct: 66 EKDETE 71 >gi|159905131|ref|YP_001548793.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159886624|gb|ABX01561.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 209 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K IR N + ++ + + E + +I L + N +ISF + Sbjct: 33 ISKNLKKIRNENGLSLDAVSKLTGVSKGMLGQIEREEVNPTISTILKIANGLKISFTSLL 92 Query: 92 DGEVIDRRYEDVTNKKRL 109 + D + ++ N + Sbjct: 93 SEKEADVKTVELNNVSPI 110 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 4/117 (3%) Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 S + + + + + I LK IR + G+S KL G+ L Sbjct: 4 CSINILCHTIRMIYHTKIKVIFMENPSHVISKNLKKIRNENGLSLDAVSKLTGVSKGMLG 63 Query: 145 NYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 E+ P I KI K + E +K + N S KK Sbjct: 64 QIEREEVNPTISTILKIANGLKISFTSLLSEKEA----DVKTVELNNVSPIYDDSKK 116 >gi|153954548|ref|YP_001395313.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347406|gb|EDK33942.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 71 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I+++RK Q+++A ++ E G + S+ A + + + S + I+ Sbjct: 3 NKIEELRKRIGLNQEKLAKALKVSRQTISSIETGKYNPSLELAFAISDYFGKSIEEIFIH 62 Query: 94 E 94 E Sbjct: 63 E 63 Score = 57.7 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +++ +RK G++Q + K L + T+S+ E G+ P ++ A I K ++ I+ Sbjct: 1 MQNKIEELRKRIGLNQEKLAKALKVSRQTISSIETGKYNPSLELAFAISDYFGKSIEEIF 60 Query: 174 FGD 176 + Sbjct: 61 IHE 63 >gi|83309880|ref|YP_420144.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944721|dbj|BAE49585.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 151 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 1/105 (0%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG+RI++ R +Q++MA + +E G+ S + + + Sbjct: 42 RHVGSRIRERRIMLGLSQQQMADLIGVTYQQAHKYERGINRISAGRLFEIAQVLGVPVGF 101 Query: 90 IYDG-EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 Y+G E + L+ + + R + +SQ+ Sbjct: 102 FYEGLENRRGSDLSARQRMCLELARNFTSITNERHQEALSQLARA 146 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 1/86 (1%) Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 I + + D + +R++ R G+SQ + L+G+ YE+G Sbjct: 21 IMPTRAEAKPARPMNRANDTDRHVG-SRIRERRIMLGLSQQQMADLIGVTYQQAHKYERG 79 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFG 175 +I QV + + Y G Sbjct: 80 INRISAGRLFEIAQVLGVPVGFFYEG 105 >gi|322376841|ref|ZP_08051334.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321282648|gb|EFX59655.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 288 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 1/115 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + TR+K+ RK +Q+E+A G + ++ ENG + + L + ++S D+ + Sbjct: 5 LATRLKNRRKELKMSQRELAEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 + ++++ E KK + +S++ + ++ L + + Sbjct: 64 NEQIVEEIDELSEFKKLAQTFITNRNYESLKYIYELESVKVHHLSLVNKFYMEWI 118 Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-- 175 LK+ RK+ MSQ E + + +S E G P + + K +D+ + Sbjct: 9 LKNRRKELKMSQRELAEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFFNEQI 67 Query: 176 -DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E+ K+ + ++ + K Sbjct: 68 VEEIDELSEFKKLAQTFITNRNYESLK 94 >gi|288800276|ref|ZP_06405734.1| transcriptional regulator [Prevotella sp. oral taxon 299 str. F0039] gi|288332489|gb|EFC70969.1| transcriptional regulator [Prevotella sp. oral taxon 299 str. F0039] Length = 184 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G R+K +R+ N + +E+A + E G S + Y I D Sbjct: 6 KQIGERLKGLREIFNISPEEIAQLCDISLEHYFKIEAGEADPSFYRLSKIAKRYNIGVDA 65 Query: 90 IYDGEV 95 + GE Sbjct: 66 LLFGEE 71 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 31/85 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK +R+ +S E +L + E G P KI + +D + FG Sbjct: 10 ERLKGLREIFNISPEEIAQLCDISLEHYFKIEAGEADPSFYRLSKIAKRYNIGVDALLFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 +E + G S + K+ Sbjct: 70 EEAHMSSYFVTRSGKGKSTEKHKNY 94 >gi|285018010|ref|YP_003375721.1| hypothetical protein XALc_1223 [Xanthomonas albilineans GPE PC73] gi|283473228|emb|CBA15733.1| hypothetical protein XALc_1223 [Xanthomonas albilineans] Length = 125 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEIS 86 + RI+ R +Q E++ + V +E+G + ++++ L E++ Sbjct: 64 LMASIAERIRLARNDRGLSQTELSRLLGVNRATVGHWESGESFAPNLQHLHSLSLVLEVT 123 Query: 87 FD 88 D Sbjct: 124 ID 125 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHL 169 +I R++ R D+G+SQ E +LLG+ +T+ ++E G + P ++ + V + + Sbjct: 65 MASIAERIRLARNDRGLSQTELSRLLGVNRATVGHWESGESFAPNLQHLHSLSLVLEVTI 124 Query: 170 D 170 D Sbjct: 125 D 125 >gi|260438749|ref|ZP_05792565.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292808735|gb|EFF67940.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 R++++RK Q+E+A + ENG + SI+ A + + +S Sbjct: 3 NRLEELRKQRGIKQEELANALEVSRQTIGSLENGRYNPSIQLAFKIAKYFNMS 55 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + RL+ +RK +G+ Q E L + T+ + E GR P I+ A KI + Sbjct: 1 MKNRLEELRKQRGIKQEELANALEVSRQTIGSLENGRYNPSIQLAFKIAKYFNMS 55 >gi|254559382|ref|YP_003066477.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254266660|emb|CAX22437.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 158 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ +RK+ TQ + V +ENGM + E+ Y Sbjct: 42 VGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLSDIARVLEVRVSSFY 101 Query: 92 DGEV 95 DG+ Sbjct: 102 DGDE 105 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 D LD R++ +RK KG++Q G+ +G+ + YE G Sbjct: 26 DTPNARPKRATDLDRLVG-ERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGAS 84 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 I +V + + Y GDE + Sbjct: 85 RLSDIARVLEVRVSSFYDGDEGEGEDRAE 113 >gi|240949478|ref|ZP_04753818.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240296051|gb|EER46712.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 113 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 35/82 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI+ RK + ++++ N + ++ +E G ++ + + + ++ +W Sbjct: 11 KLIGQRIQQKRKEFGYSAEKLSECINLSQQQLSRYERGASKINVNHLIDIAIFFKTPINW 70 Query: 90 IYDGEVIDRRYEDVTNKKRLDP 111 + + E + ++ Sbjct: 71 FFQDCIPANFTEKELKEIEINQ 92 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + IG R++ RK+ G S + + + + LS YE+G + + I K Sbjct: 7 EMTDKLIGQRIQQKRKEFGYSAEKLSECINLSQQQLSRYERGASKINVNHLIDIAIFFKT 66 Query: 168 HLDWIY 173 ++W + Sbjct: 67 PINWFF 72 >gi|239994900|ref|ZP_04715424.1| transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 67 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +D+ I +R + +Q+E+A ++ E G + S+ AL + + I + Sbjct: 2 NEDLDNHIHKLRLQHKISQQELADAIGVSRKTISTVETGRFTPSVVIALKIAEYFAIPVE 61 Query: 89 WIYDGE 94 ++ + Sbjct: 62 QVFALK 67 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +R +SQ E +G+ T+S E GR P + A KI + ++ ++ Sbjct: 7 NHIHKLRLQHKISQQELADAIGVSRKTISTVETGRFTPSVVIALKIAEYFAIPVEQVF 64 >gi|229109859|ref|ZP_04239443.1| hypothetical protein bcere0018_21200 [Bacillus cereus Rock1-15] gi|228673611|gb|EEL28871.1| hypothetical protein bcere0018_21200 [Bacillus cereus Rock1-15] Length = 185 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LKSIR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|225573421|ref|ZP_03782176.1| hypothetical protein RUMHYD_01613 [Blautia hydrogenotrophica DSM 10507] gi|225039231|gb|EEG49477.1| hypothetical protein RUMHYD_01613 [Blautia hydrogenotrophica DSM 10507] Length = 65 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R + +Q E+A + + E G + S++ + + E + + D ++ E Sbjct: 5 RMKLARMEKDLSQIELANRIGVTRQTIGMIEAGDYNPSLKLCIAICRELDKTLDDLFWEE 64 Query: 95 V 95 Sbjct: 65 E 65 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R +K +SQIE +G+ T+ E G P +K I + K LD +++ +E Sbjct: 6 MKLARMEKDLSQIELANRIGVTRQTIGMIEAGDYNPSLKLCIAICRELDKTLDDLFWEEE 65 >gi|78063409|ref|YP_373317.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971294|gb|ABB12673.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 281 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/83 (10%), Positives = 28/83 (33%), Gaps = 4/83 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW- 89 ++G ++ R +Q ++++ A + ++ E+G L L ++ Sbjct: 14 ELGQLLRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDTLLTLAQTLDVPLRER 73 Query: 90 ---IYDGEVIDRRYEDVTNKKRL 109 + E + + + Sbjct: 74 NALLLAAGYAPVYSEAPWDAQEM 96 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 P+ +G L+ R +G+SQ++ G+ +S E GR++P + Q L Sbjct: 12 PHELGQLLRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDTLLTLAQTLDVPL 70 >gi|56962741|ref|YP_174467.1| DNA-binding protein [Bacillus clausii KSM-K16] gi|56908979|dbj|BAD63506.1| DNA-binding protein [Bacillus clausii KSM-K16] Length = 68 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K +R TQ E+A + E G S S+ A + ++E+ + + Sbjct: 2 EIENRVKVLRAEKRMTQGELAEAVGVTRQTIVALEKGRYSPSLLLAFQIAKQFELPVEDV 61 Query: 91 YD 92 + Sbjct: 62 FF 63 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 35/67 (52%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+K +R +K M+Q E + +G+ T+ E+GR P + A +I + + ++ Sbjct: 1 MEIENRVKVLRAEKRMTQGELAEAVGVTRQTIVALEKGRYSPSLLLAFQIAKQFELPVED 60 Query: 172 IYFGDEV 178 ++F E Sbjct: 61 VFFLTEE 67 >gi|329767341|ref|ZP_08258866.1| hypothetical protein HMPREF0428_00563 [Gemella haemolysans M341] gi|328836030|gb|EGF85721.1| hypothetical protein HMPREF0428_00563 [Gemella haemolysans M341] Length = 218 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 8/132 (6%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R +Q +A +A N +E G + + L + + + Sbjct: 5 NRLKSLRAKRKVSQTAVAEYLGVTRAAYNSWEKGKYIPNKKNLEELALYFNVETTYFESE 64 Query: 94 EV--IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL-LGMPNSTLSNYEQGR 150 + NKK+L A + + K KL G+ N +YE Sbjct: 65 YEIVNKYLQLNDINKKKLLTIANELYISQLHKY-----QVHAKLSAGLGNFYYEDYEFDT 119 Query: 151 TIPEIKPARKIK 162 + I Sbjct: 120 VYFDKDIPYDIA 131 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLKS+R + +SQ + LG+ + +++E+G+ IP K ++ + Sbjct: 1 MFCNNRLKSLRAKRKVSQTAVAEYLGVTRAAYNSWEKGKYIPNKKNLEELALYFNVETTY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKS 196 E K + N +KK Sbjct: 61 F----ESEYEIVNKYLQLNDINKKK 81 >gi|309777861|ref|ZP_07672807.1| helix-turn-helix domain-containing protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914422|gb|EFP60216.1| helix-turn-helix domain-containing protein [Erysipelotrichaceae bacterium 3_1_53] Length = 266 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++ N +SA+ +E S + L Y ++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLEEQVNLSKSALGSYEAKDFKDISHYAIIKLAKFYGVTADYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 G R + + + LKS R D + Sbjct: 65 L-GLSQTRNHPNADLADLCLSDDMIELLKSGRVDNSLLCELAA 106 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE-QGRTIPEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + + S L +YE + K+ + D Sbjct: 3 LSIQERLKDLRVERGLTLEQLEEQVNLSKSALGSYEAKDFKDISHYAIIKLAKFYGVTAD 62 Query: 171 WIY 173 ++ Sbjct: 63 YLL 65 >gi|302129811|ref|ZP_07255801.1| putative phage repressor [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 259 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RIK RK + TQ E+A ++A++ E+G S Y L + E ++ W+ Sbjct: 2 NLSERIKLARKEAHLTQSELAEKVGIAQTAISQLESGKTLRS-SYLLQIAQECGVNSLWL 60 Query: 91 YDGEVI 96 GE Sbjct: 61 QTGEGD 66 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K RK+ ++Q E + +G+ + +S E G+T+ +I Q + W Sbjct: 1 MNLSERIKLARKEAHLTQSELAEKVGIAQTAISQLESGKTLRS-SYLLQIAQECGVNSLW 59 Query: 172 IYFGDEVI 179 + G+ I Sbjct: 60 LQTGEGDI 67 >gi|297616433|ref|YP_003701592.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297144270|gb|ADI01027.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 128 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ K +G RI++ R+ ++ ++A + V E G S+ + Sbjct: 1 MQLDLKALGRRIREQRQKLGLSRSQLAEIIGVSDYYVGQLERGERVMSLAVFMRFVFCLR 60 Query: 85 ISFDWIYDGEVIDR 98 +S D++ G D Sbjct: 61 VSPDYLLTGAQNDN 74 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 34/69 (49%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +LD A+G R++ R+ G+S+ + +++G+ + + E+G + + + + Sbjct: 1 MQLDLKALGRRIREQRQKLGLSRSQLAEIIGVSDYYVGQLERGERVMSLAVFMRFVFCLR 60 Query: 167 KHLDWIYFG 175 D++ G Sbjct: 61 VSPDYLLTG 69 >gi|293396430|ref|ZP_06640708.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291421219|gb|EFE94470.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 185 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 29/77 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR+ +Q+ +A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSLSAFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + V + L Sbjct: 69 EPDKPAEPQIVIEQADL 85 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ V L Sbjct: 6 LAPGKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSLSA 65 Query: 172 IYFGDEVIVPKSI 184 + + I Sbjct: 66 FFAEPDKPAEPQI 78 >gi|228999804|ref|ZP_04159377.1| hypothetical protein bmyco0003_43570 [Bacillus mycoides Rock3-17] gi|229007358|ref|ZP_04164956.1| hypothetical protein bmyco0002_42380 [Bacillus mycoides Rock1-4] gi|228753889|gb|EEM03329.1| hypothetical protein bmyco0002_42380 [Bacillus mycoides Rock1-4] gi|228759953|gb|EEM08926.1| hypothetical protein bmyco0003_43570 [Bacillus mycoides Rock3-17] Length = 73 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+++ R + +Q ++ + ++L E G + SI +L + + + + + I+ Sbjct: 5 NRVREFRAKHRMSQGDLGKVIDSSRQTISLIERGDYAPSIVLSLKIAHVFGVPVEEIFT 63 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ R MSQ + GK++ T+S E+G P I + KI V ++ Sbjct: 1 MKLQNRVREFRAKHRMSQGDLGKVIDSSRQTISLIERGDYAPSIVLSLKIAHVFGVPVEE 60 Query: 172 IYF 174 I+ Sbjct: 61 IFT 63 >gi|227113894|ref|ZP_03827550.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 188 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/77 (11%), Positives = 26/77 (33%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + +G +K +R+ + A ++ + E G S ++ + + Sbjct: 3 DELTRRIGNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGMNV 62 Query: 86 SFDWIYDGEVIDRRYED 102 +F + + D Sbjct: 63 AFSTFIEPTLADEDVTY 79 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK++R++KG S + G+ + L E+G + P + KI Sbjct: 11 NTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGMNVAFSTFI-- 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 + + + + G SS K + Sbjct: 69 EPTLADEDVTYRSGAGSSFKENE 91 >gi|168214601|ref|ZP_02640226.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] gi|170713971|gb|EDT26153.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] Length = 119 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK IR + N TQ+E AI S++ FE+G R + ++I+ DW+ Sbjct: 1 MGERIKQIRTSLNLTQEEFAIKLGMGRSSIAAFESGR-PIKNRIIKEICKIFKINEDWLR 59 Query: 92 DGEVIDRRYEDVTNK 106 GE + + + Sbjct: 60 TGEGEMYLHLTDSKQ 74 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R+K IR ++Q EF LGM S+++ +E GR I + + ++I ++ K + DW+ Sbjct: 1 MGERIKQIRTSLNLTQEEFAIKLGMGRSSIAAFESGRPI-KNRIIKEICKIFKINEDWLR 59 Query: 174 FGDEVIVPKSIKRAKGNQS 192 G+ + + N+ Sbjct: 60 TGEGEMYLHLTDSKQFNEV 78 >gi|220920276|ref|YP_002495577.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944882|gb|ACL55274.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 137 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 27/80 (33%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + VG R++ R +Q+++ + +E G S + + Sbjct: 8 IDRHVGHRVRVRRLLVGVSQEKLGDALGVTFQQIQKYEKGANRISASRLQQIAEMLGVPV 67 Query: 88 DWIYDGEVIDRRYEDVTNKK 107 + Y+G + D + + Sbjct: 68 GFFYEGAPRPENWLDEEHVE 87 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 +D + ++ R G+SQ + G LG+ + YE+G ++I Sbjct: 1 MKKAPDPIDRHVGHR-VRVRRLLVGVSQEKLGDALGVTFQQIQKYEKGANRISASRLQQI 59 Query: 162 KQVTKKHLDWIYFG 175 ++ + + Y G Sbjct: 60 AEMLGVPVGFFYEG 73 >gi|78187740|ref|YP_375783.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167642|gb|ABB24740.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 390 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R A +Q+++A A + + E G + ++ A + N ++ I Sbjct: 13 LGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALHVTLSDIL 72 Query: 92 DGEVIDRRYEDVT 104 + + YE Sbjct: 73 GTQQLREFYELFP 85 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R G SQ + + G+ + + E+G + A KI L I Sbjct: 17 VRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALHVTLSDIL 72 >gi|73541020|ref|YP_295540.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha JMP134] gi|72118433|gb|AAZ60696.1| transcriptional regulator, XRE family with shikimate kinase activity [Ralstonia eutropha JMP134] Length = 309 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E Y +G RI+ +R A ++K++A GA+ E + E G + S+ + Sbjct: 20 GERDPYLTQLGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVARA 79 Query: 83 YEISF 87 ++ Sbjct: 80 LDVPL 84 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 R++S+R +GMS+ + + + L+N E G + R++ + L Sbjct: 31 ERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVARALDVPL 84 >gi|193062540|ref|ZP_03043634.1| DNA-binding protein [Escherichia coli E22] gi|260843745|ref|YP_003221523.1| putative DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|192931662|gb|EDV84262.1| DNA-binding protein [Escherichia coli E22] gi|257758892|dbj|BAI30389.1| predicted DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|323163586|gb|EFZ49411.1| helix-turn-helix family protein [Escherichia coli E128010] Length = 178 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK +R+ +G S + G+ + L E+ + P + KI + Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 178 VIVPKS 183 P Sbjct: 72 PATPSV 77 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 24/85 (28%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + T +K +R+ + +A ++ + E S ++ + Sbjct: 1 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 + F + + Sbjct: 61 VPFSTFISPPQPATPSVYDPQQHAM 85 >gi|152966423|ref|YP_001362207.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151360940|gb|ABS03943.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 109 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 25/69 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K + R+ +R T++++A + E G S+ AL L + + + Sbjct: 11 KHLHNRLAVLRAERGITRRQLAEAVGVNVQTIGFLERGDYGPSVELALRLAGHFGLPVEA 70 Query: 90 IYDGEVIDR 98 ++ Sbjct: 71 LFSLTPFPP 79 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 31/61 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL +R ++G+++ + + +G+ T+ E+G P ++ A ++ ++ + Sbjct: 12 HLHNRLAVLRAERGITRRQLAEAVGVNVQTIGFLERGDYGPSVELALRLAGHFGLPVEAL 71 Query: 173 Y 173 + Sbjct: 72 F 72 >gi|294633078|ref|ZP_06711637.1| DNA-binding protein [Streptomyces sp. e14] gi|292830859|gb|EFF89209.1| DNA-binding protein [Streptomyces sp. e14] Length = 482 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+L+ +R++ GM+Q+E + LG+ S + EQ R +I +V ++ Sbjct: 11 YAHAKLRRLRREHGMNQVEMARALGISTSYANQIEQSRRPLTATVLLRIAEVFGVDPEFF 70 Query: 173 YFGDEVIVPKSIKRA 187 D+ + ++ A Sbjct: 71 SEADQDRLAAELRTA 85 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 21/57 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +++ +R+ + Q EMA S N E + L + + + ++ Sbjct: 14 AKLRRLRREHGMNQVEMARALGISTSYANQIEQSRRPLTATVLLRIAEVFGVDPEFF 70 >gi|260588066|ref|ZP_05853979.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260541593|gb|EEX22162.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 107 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 ++ F + + L++ E D+ + RK N TQKE+A ++ + Sbjct: 11 IMSEFRDFLDEQLEDKEFREEYENMSPEFDIIRAMVAARKERNMTQKELAEKTGITQADI 70 Query: 62 NLFENGMCSTSIRYALYLRN 81 + ENG + S+ L Sbjct: 71 SRIENGTRNPSLDMIKRLAK 90 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 32/73 (43%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + E ++ + + + I + + RK++ M+Q E + G+ + +S E G Sbjct: 18 FLDEQLEDKEFREEYENMSPEFDIIRAMVAARKERNMTQKELAEKTGITQADISRIENGT 77 Query: 151 TIPEIKPARKIKQ 163 P + +++ + Sbjct: 78 RNPSLDMIKRLAK 90 >gi|225018073|ref|ZP_03707265.1| hypothetical protein CLOSTMETH_02010 [Clostridium methylpentosum DSM 5476] gi|224949070|gb|EEG30279.1| hypothetical protein CLOSTMETH_02010 [Clostridium methylpentosum DSM 5476] Length = 265 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G +I NK QK++A ++ ++ F NG + + + + +S DW Sbjct: 6 KMIGEKINQALTLCNKKQKDLAKELQVADNTISYFVNGSRTPNTEQLIKIARFCNVSADW 65 Query: 90 IY 91 + Sbjct: 66 LL 67 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++ Q + K L + ++T+S + G P + KI + DW+ Sbjct: 7 MIGEKINQALTLCNKKQKDLAKELQVADNTISYFVNGSRTPNTEQLIKIARFCNVSADWL 66 Query: 173 YFGDEVIVPKS 183 EV P + Sbjct: 67 LGLSEVQKPNT 77 >gi|154482414|ref|ZP_02024862.1| hypothetical protein EUBVEN_00081 [Eubacterium ventriosum ATCC 27560] gi|149736733|gb|EDM52619.1| hypothetical protein EUBVEN_00081 [Eubacterium ventriosum ATCC 27560] Length = 79 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 +I+ PE + ++ G + RK TQ ++A + S ++ E G S Sbjct: 4 VILKPEYKHLYEKFGLNVVYYRKREKLTQLQLAELVDIDRSHISAIELGKVGVSFDVIFK 63 Query: 79 LRNEYEISFDWIYD 92 L + +I+ ++D Sbjct: 64 LCDVLKITPKELFD 77 Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RK + ++Q++ +L+ + S +S E G+ K+ V K ++ Sbjct: 24 YRKREKLTQLQLAELVDIDRSHISAIELGKVGVSFDVIFKLCDVLKITPKELF 76 >gi|116249086|ref|YP_764927.1| putative aldehyde dehydrogenase-like protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253736|emb|CAK12129.1| putative aldehyde dehydrogenase-like protein [Rhizobium leguminosarum bv. viciae 3841] Length = 182 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+R++ +R AN +Q+E+A S ++L E+ + S+ + + I Sbjct: 4 DIGSRLRYLRIANKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEF 63 Query: 91 YDGEVIDRRY 100 + E R Sbjct: 64 FAFEPERPRK 73 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RL+ +R +SQ E K G+PNST+S E + P + ++I L + Sbjct: 7 SRLRYLRIANKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFFAF 66 Query: 176 DEVIVPKSIKRAKG 189 + K+ A+ Sbjct: 67 EPERPRKAFYAAEE 80 >gi|332981127|ref|YP_004462568.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698805|gb|AEE95746.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 74 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 25/72 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++K IR T +++ + + E+ S+ + N EI + Sbjct: 2 IGKKLKSIRNKRGYTLRQLEKLSGVSHGFLCDIEHDRSDPSLETLHKIANALEIEPAYFL 61 Query: 92 DGEVIDRRYEDV 103 + D + Sbjct: 62 NNANTDEQTNKT 73 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG +LKSIR +G + + KL G+ + L + E R+ P ++ KI + + Sbjct: 1 MIGKKLKSIRNKRGYTLRQLEKLSGVSHGFLCDIEHDRSDPSLETLHKIANALEIEPAYF 60 Query: 173 Y 173 Sbjct: 61 L 61 >gi|319782930|ref|YP_004142406.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168818|gb|ADV12356.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 187 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 27/65 (41%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G RI R + + E+A + ++ ++ E G S + + + + + ++ Sbjct: 7 EISSTIGRRIHAERVMRDWSLAELAEHSGVSKAMLSTIERGKTSPTAALLVRISSAFGMT 66 Query: 87 FDWIY 91 + Sbjct: 67 LSTLI 71 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ + R + S E + G+ + LS E+G+T P +I L + Sbjct: 14 RRIHAERVMRDWSLAELAEHSGVSKAMLSTIERGKTSPTAALLVRISSAFGMTLSTLIAR 73 Query: 176 DEVIVPKSIKRAK 188 E+ + ++ A Sbjct: 74 AELQGGRLLREAD 86 >gi|315221517|ref|ZP_07863437.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315189351|gb|EFU23046.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 208 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RIK IR T +E N + VN +E G + L + +S + + Sbjct: 7 EVGNRIKSIRLDQGATMEEFGKAFNTSKGTVNNWEKGRNLPNKENLLKIAKLGNLSVEQL 66 Query: 91 YDGEVIDRRYE 101 G RY Sbjct: 67 LYGSSARSRYN 77 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +G R+KSIR D+G + EFGK T++N+E+GR +P + KI ++ Sbjct: 1 MEVNNIEVGNRIKSIRLDQGATMEEFGKAFNTSKGTVNNWEKGRNLPNKENLLKIAKLGN 60 Query: 167 KHLDWIYFG 175 ++ + +G Sbjct: 61 LSVEQLLYG 69 >gi|291526787|emb|CBK92373.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 115 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 6/110 (5%) Query: 21 ITPEIRQYWKDV--GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ + + KD G RI D RK +Q E+A A++ ENG + Sbjct: 1 MSSKAQTREKDYERGLRIADRRKVMGLSQDELAHRVGIGRQALSAIENG-GDFKTQTLDN 59 Query: 79 LRNEYEISFDWIYDG---EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 L +S D+I G E + E + +D + L I+ K Sbjct: 60 LAIVLGVSVDFIMYGKNEENSELLSEAMDVLSDMDELQVRQCLAMIKAMK 109 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y G R+ RK G+SQ E +G+ LS E G + + + V +D+ Sbjct: 12 YERGLRIADRRKVMGLSQDELAHRVGIGRQALSAIENGGDF-KTQTLDNLAIVLGVSVDF 70 Query: 172 IYFGDEVIVPKSIKRA 187 I +G + + A Sbjct: 71 IMYGKNEENSELLSEA 86 >gi|262280383|ref|ZP_06058167.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258161|gb|EEY76895.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 209 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + VGT I+ +R +Q+++A A + E G + S+ + + Sbjct: 35 QHVGTNIRSLRDERGLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLSVD 91 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++S+R ++G+SQ + G+ T++ E G+ + I V F Sbjct: 40 NIRSLRDERGLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLSVD-----FRT 94 Query: 177 EVIVPKSIKRAKGNQSSKKSKKDKKSS 203 V P+ ++ N + + K++ + Sbjct: 95 IVSAPELKEQTLVNVLAWQGNKEESKA 121 >gi|222147111|ref|YP_002548068.1| transcriptional regulatory protein [Agrobacterium vitis S4] gi|221734101|gb|ACM35064.1| transcriptional regulatory protein [Agrobacterium vitis S4] Length = 194 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 22/60 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K IR A T ++A + + ++ E S + L + S + Sbjct: 12 IAARLKAIRTARGLTLDQLADLSGVSRAMISRIERAEASPTATLLARLCSALGQSLSIFF 71 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + N AI ARLK+IR +G++ + L G+ + +S E+ P ++ Sbjct: 1 MENTPDTLTLAIAARLKAIRTARGLTLDQLADLSGVSRAMISRIERAEASPTATLLARLC 60 Query: 163 QVTKKHLDWIY 173 + L + Sbjct: 61 SALGQSLSIFF 71 >gi|199598993|ref|ZP_03212401.1| putative regulatory protein [Lactobacillus rhamnosus HN001] gi|199590101|gb|EDY98199.1| putative regulatory protein [Lactobacillus rhamnosus HN001] Length = 106 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 37/75 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IKD R+A +++E+A N V+ +E G+ +I+ + + + E+S D + Sbjct: 3 IGEQIKDRREALAWSKEELAQAVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 92 DGEVIDRRYEDVTNK 106 + ++ + Sbjct: 63 KSDPKLQKTIQIDKN 77 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K R+ S+ E + + +S +E+G + P IK I + LD Sbjct: 1 MPIGEQIKDRREALAWSKEELAQAVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDN 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + D PK K + ++++K++ Sbjct: 61 LIKSD----PKLQKTIQIDKNAKEASD 83 >gi|239827077|ref|YP_002949701.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239807370|gb|ACS24435.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 108 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K VG RI+++RK N + ++A + ++ ENG I ++I Sbjct: 3 INKKVGERIREVRKKYNLSMMQLADELGISQPRLSRIENGDQEIPISLIQKFCERFDIPL 62 Query: 88 DWIYDGEVIDRR 99 + D + Sbjct: 63 SSFFRSLEKDEK 74 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 3/89 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK +S ++ LG+ LS E G I +K + L + Sbjct: 9 ERIREVRKKYNLSMMQLADELGISQPRLSRIENGDQEIPISLIQKFCERFDIPLSSFFRS 68 Query: 176 ---DEVIVPKSIKRAKGNQSSKKSKKDKK 201 DE I + + + KK Sbjct: 69 LEKDEKAGDSLINEQLEQVLASLNDEQKK 97 >gi|209552341|ref|YP_002284256.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539453|gb|ACI59385.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 152 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R+ +Q+ +A V +E G+ + + S + + Sbjct: 13 VGARIRMRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIADVLHTSPSFFF 72 Query: 92 DGEVIDR 98 + E + Sbjct: 73 EQENSEP 79 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +V +D Y AR++ R+ GMSQ + +G+ + YE+G ++ Sbjct: 1 MNVKTPNAIDGYVG-ARIRMRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQR 59 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIK 185 I V +F E P +++ Sbjct: 60 IADVLHTSPS-FFFEQENSEPLTLQ 83 >gi|206971646|ref|ZP_03232596.1| transcriptional regulator Xre [Bacillus cereus AH1134] gi|206733631|gb|EDZ50803.1| transcriptional regulator Xre [Bacillus cereus AH1134] Length = 117 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 3/102 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K + + TQ+++A +V + G S R + N ++ D++ Sbjct: 5 QRLKLLIEKRGITQQQLADAIGVSHVSVYNYVEGKKSPGTRTLQKIANHLNVTTDYLLGL 64 Query: 94 EVIDRRYEDVT---NKKRLDPYAIGARLKSIRKDKGMSQIEF 132 D K+ + I L ++ K + Q+E Sbjct: 65 SDSPDLTADQDLQLTKEAQEILQIINDLPEEQRKKALEQLEM 106 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK + + +G++Q + +G+ + ++ NY +G+ P + +KI D+ Sbjct: 1 MFSHQRLKLLIEKRGITQQQLADAIGVSHVSVYNYVEGKKSPGTRTLQKIANHLNVTTDY 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|206970675|ref|ZP_03231627.1| DNA-binding protein [Bacillus cereus AH1134] gi|229178189|ref|ZP_04305560.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|206734311|gb|EDZ51481.1| DNA-binding protein [Bacillus cereus AH1134] gi|228605319|gb|EEK62769.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] Length = 404 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+ G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKTLRKEKKLTQTELV-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + + K++ Sbjct: 63 EEDEGEIVELIQKMEPLIKANKCDEVYKTL 92 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 5/92 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K++RK+K ++Q +L+G + S LS E G+ P +K + I + + + ++ Sbjct: 6 EKIKTLRKEKKLTQT---ELVGSELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 DE + + I++ + + K + K+ P Sbjct: 63 EEDEGEIVELIQKMEPLIKANKCDEVYKTLLP 94 >gi|220926724|ref|YP_002502026.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951331|gb|ACL61723.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 8/92 (8%), Positives = 26/92 (28%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI + R+ T + +A ++ +NG + S++ + ++ + Sbjct: 16 NRIAEWREKRGLTLEALAEATGFSTGYLSRMQNGSRNVSLKNLAKISEALKVPVADLVPE 75 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + + + Sbjct: 76 GEEVPPGGEASPIPLPKGMVRVIGIAKAGLFR 107 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 TN+ RL P R+ R+ +G++ + G LS + G +K K Sbjct: 1 MGKTNRTRLTPAEKPNRIAEWREKRGLTLEALAEATGFSTGYLSRMQNGSRNVSLKNLAK 60 Query: 161 IKQVTKKHLDWIYFGDEVIVP 181 I + K + + E + P Sbjct: 61 ISEALKVPVADLVPEGEEVPP 81 >gi|104781203|ref|YP_607701.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95110190|emb|CAK14897.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 181 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D GTR+K +R+ NN +Q+E+A + S ++ E S S+ L +S Sbjct: 2 DTGTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMSLAEF 61 Query: 91 Y 91 + Sbjct: 62 F 62 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK +R+ +SQ E + G+ NST+S EQ R P + +K+ + L Sbjct: 1 MDTGTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMSLAE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + DE + + G Q Sbjct: 61 FFSFDEPVREERFVFRGGEQP 81 >gi|91779152|ref|YP_554360.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91691812|gb|ABE35010.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 189 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V TR++ IRK + +Q+E+A A ++L E S S+ L +S Sbjct: 10 EVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEF 69 Query: 91 YDGEVI 96 + EV Sbjct: 70 FTFEVE 75 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ IRK G+SQ E K G+ N T+S EQ R P + +K+ + L + + Sbjct: 15 LQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFFTFEV 74 Query: 178 VIVPKSIKR 186 + + R Sbjct: 75 EVERSVVSR 83 >gi|21910237|ref|NP_664505.1| putative immunity repressor protein - phage associated [Streptococcus pyogenes MGAS315] gi|28876166|ref|NP_795393.1| putaive immunity repressor protein [Streptococcus pyogenes phage 315.1] gi|28896063|ref|NP_802413.1| repressor protein [Streptococcus pyogenes SSI-1] gi|21904431|gb|AAM79308.1| putaive immunity repressor protein - phage-associated [Streptococcus pyogenes phage 315.1] gi|28811313|dbj|BAC64246.1| putative repressor protein [Streptococcus pyogenes SSI-1] Length = 112 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK +R+A TQ A A+ ++ + E+ + S++ + + + W+ + Sbjct: 4 RIKYLRQALGLTQSAFAAKAHIHKNMIANHESQNSNPSLKQIEKIALAFNVEPAWLAGWD 63 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + DP A R E G+L+ S Y+ Sbjct: 64 TKPQIVIKEKVVRVQDPSA--------RIPNDWKNDECGRLIKWKESGKQFYKSFG 111 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +R+ G++Q F + + ++N+E + P +K KI W+ Sbjct: 5 IKYLRQALGLTQSAFAAKAHIHKNMIANHESQNSNPSLKQIEKIALAFNVEPAWL 59 >gi|311894296|dbj|BAJ26704.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 208 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + VG R++++R A + E+A + ++ ++ E+G + ++ L + Sbjct: 10 ELAARVGLRLRELRVARGLSLSELARRSGVGKATLSGLESGTRNPTLETLYALTTALGLP 69 Query: 87 F 87 Sbjct: 70 L 70 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ +R +G+S E + G+ +TLS E G P ++ + L Sbjct: 19 LRELRVARGLSLSELARRSGVGKATLSGLESGTRNPTLETLYALTTALGLPL 70 >gi|291521518|emb|CBK79811.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 118 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 4/108 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK TQ+E++ ++ + E G + S L IS D + Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 + + N+ ++ + ++ +Q +L + Sbjct: 69 N--PDISLENEGVNQMKMLYSSCPPEMRD--TLLHHTQETVKELTELS 112 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK+K ++Q E L + ++N E+G+ P R + +V L Sbjct: 5 DLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISL 64 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSS 193 D + D + + + + K SS Sbjct: 65 DTLINPDISLENEGVNQMKMLYSS 88 >gi|291460791|ref|ZP_06600181.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291416595|gb|EFE90314.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 64 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R A + +Q+++A +N E G + +IR + + D ++ E Sbjct: 5 RMKSARAAKDLSQQQLADLVGVSRQTINAIEKGDYNPTIRLCTAICRALSKTLDELFWEE 64 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +KS R K +SQ + L+G+ T++ E+G P I+ I + K LD +++ + Sbjct: 6 MKSARAAKDLSQQQLADLVGVSRQTINAIEKGDYNPTIRLCTAICRALSKTLDELFWEE 64 >gi|317053257|ref|YP_004119024.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952996|gb|ADU72468.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 157 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G + ++ R A +Q+++A A V ENG + L + + +S + Sbjct: 4 GNKFREYRLARAWSQEQLAEMAGLSTRTVQRIENGDR-PGLETLSALASVFGVSVSEL 60 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G + + R + SQ + ++ G+ T+ E G P ++ + V + Sbjct: 1 MSNGNKFREYRLARAWSQEQLAEMAGLSTRTVQRIENGDR-PGLETLSALASVFGVSVSE 59 Query: 172 IYFGDEVIVPKSIKR 186 + D+ I +R Sbjct: 60 LTGSDKNIDEALDRR 74 >gi|257056871|ref|YP_003134703.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586743|gb|ACU97876.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 382 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR-YALYLRNEYEISF 87 +G I+ +R+ T ++ A A + ++ ENG + R + + + +S Sbjct: 4 IGATIRRLRRWRGLTIEQAAGLAGITKGYLSKIENGRVAVDKRSTLVAIADALRVSL 60 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI-KPARKIKQVTKKHL 169 IGA ++ +R+ +G++ + L G+ LS E GR + I + L Sbjct: 1 MNTIGATIRRLRRWRGLTIEQAAGLAGITKGYLSKIENGRVAVDKRSTLVAIADALRVSL 60 Query: 170 DWIYFGD--EVIVPK 182 I GD E+ P+ Sbjct: 61 VDI-TGDGLEIRDPE 74 >gi|254511979|ref|ZP_05124046.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221535690|gb|EEE38678.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 123 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 32/97 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ R TQ+++A + +E G S + E+ + + Sbjct: 9 VGKRVRHRRWLIGMTQQQLAQQVGIKFQQIQKYETGANRVSASRLWDIAEALEVPVSFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +G ++ + D L +R + Sbjct: 69 EGLEETQKSDSDKKSVPADLMGDKEALDLVRSYYAIP 105 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 3/72 (4%) Query: 119 KSIRKDK---GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 K +R + GM+Q + + +G+ + YE G I + + + + + G Sbjct: 11 KRVRHRRWLIGMTQQQLAQQVGIKFQQIQKYETGANRVSASRLWDIAEALEVPVSFFFEG 70 Query: 176 DEVIVPKSIKRA 187 E + Sbjct: 71 LEETQKSDSDKK 82 >gi|170759140|ref|YP_001786285.1| HTH DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169406129|gb|ACA54540.1| HTH DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 65 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++++IRK Q+E+A ++ ENG + SI A + + + + I+ Sbjct: 3 NKLEEIRKERGINQEELADILEVSRQTISSLENGRYNPSIILAFKIARYFNKNIEDIFIY 62 Query: 94 EVI 96 E Sbjct: 63 EEE 65 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 38/65 (58%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +L+ IRK++G++Q E +L + T+S+ E GR P I A KI + K+++ I+ Sbjct: 1 MKNKLEEIRKERGINQEELADILEVSRQTISSLENGRYNPSIILAFKIARYFNKNIEDIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEEE 65 >gi|169627870|ref|YP_001701519.1| putative transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239837|emb|CAM60865.1| Hypothetical transcriptional regulator [Mycobacterium abscessus] Length = 185 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +VG R++ +R + E+A + + +++ ENG + + L Sbjct: 10 EVGARLRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTKALGAPL 66 Score = 43.4 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ARL+ +R + G+S E G+ ++S E GR + + + L Sbjct: 13 ARLRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTKALGAPL 66 >gi|118477924|ref|YP_895075.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|118417149|gb|ABK85568.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis str. Al Hakam] Length = 69 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI R TQ+E+A + E + S+ A + N +E S ++ Sbjct: 5 LHNRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITDVF 64 Query: 92 DGEVI 96 D + Sbjct: 65 DYQEE 69 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ R +KG +Q E K +G+ T++ E+ + P + A KI V +K + ++ Sbjct: 6 HNRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITDVFD 65 Query: 175 GDEV 178 E Sbjct: 66 YQEE 69 >gi|158319817|ref|YP_001512324.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140016|gb|ABW18328.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 71 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +RK +Q+E A ++ E G + S+ A + N + + I+ Sbjct: 3 NKVEILRKEKGLSQEEFAKIIRVSRQTISSIETGKYNPSLELAFIISNYFGKPIEEIFIY 62 Query: 94 EVIDRRYE 101 + + E Sbjct: 63 KRRNTYEE 70 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +RK+KG+SQ EF K++ + T+S+ E G+ P ++ A I K ++ I+ Sbjct: 8 LRKEKGLSQEEFAKIIRVSRQTISSIETGKYNPSLELAFIISNYFGKPIEEIF 60 >gi|42782413|ref|NP_979660.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42738338|gb|AAS42268.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 67 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK+ R N TQ+++A ++ E G + S++ A + + + D ++ E Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALQSTIDEVFIFE 65 Query: 95 VI 96 Sbjct: 66 DE 67 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 34/67 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+S+ E+G+ P ++ A I + + +D Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALQSTIDE 60 Query: 172 IYFGDEV 178 ++ ++ Sbjct: 61 VFIFEDE 67 >gi|15678985|ref|NP_276102.1| hypothetical protein MTH967 [Methanothermobacter thermautotrophicus str. Delta H] gi|24418730|sp|O27048|Y967_METTH RecName: Full=Putative HTH-type transcriptional regulatory protein MTH_967 gi|2622065|gb|AAB85463.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 311 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 7/160 (4%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 + P ++ + EY II Y G ++++R+ N + K++A A+ + Sbjct: 101 VAPETFRNMVADGEYPEIIADRGGYYVHIDGKTLREVREEYNLSLKDLADLAHVSRKTIY 160 Query: 63 LFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +ENG+ S A+ L I D + R E + Sbjct: 161 KYENGLARASAETAMILEEILNIRITLSIDIFSVPDRDEIEIKPSGRLADIGFGMI---- 216 Query: 123 KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + K + N+ ++N E+ R + + R++ Sbjct: 217 ETHKTPFDAVAKEIKFDNTVITNLEKER---DSRTLRRMA 253 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 DGE + + +D G L+ +R++ +S + L + T+ YE G Sbjct: 112 DGEYPEIIADRGGYYVHID----GKTLREVREEYNLSLKDLADLAHVSRKTIYKYENGLA 167 Query: 152 IPEIKPARKIKQVTKKHL 169 + A ++++ + Sbjct: 168 RASAETAMILEEILNIRI 185 >gi|291530187|emb|CBK95772.1| transcriptional regulator, XRE family [Eubacterium siraeum 70/3] Length = 72 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 31/70 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +RI+++R+ ++ Q +A ++ + +E G + L Y+ + D+I Sbjct: 3 SRIRNLREDSDLNQTTVAKMLGMSQTGYSKYETGENDVPTAILIKLAEYYKTNVDYILGL 62 Query: 94 EVIDRRYEDV 103 Y+++ Sbjct: 63 TDNPIYYKEI 72 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +R++++R+D ++Q K+LGM + S YE G K+ + K ++D+I Sbjct: 1 MYSRIRNLREDSDLNQTTVAKMLGMSQTGYSKYETGENDVPTAILIKLAEYYKTNVDYIL 60 >gi|254773353|ref|ZP_05214869.1| hypothetical protein MaviaA2_01546 [Mycobacterium avium subsp. avium ATCC 25291] Length = 477 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ +R+ TQ +A S VN EN ++ L L +++ + Sbjct: 10 GARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPTQYF 67 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GARL+ +R+++G++Q+ + LG+ S ++ E + + + + + Sbjct: 8 FAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPTQYF 67 >gi|238018833|ref|ZP_04599259.1| hypothetical protein VEIDISOL_00693 [Veillonella dispar ATCC 17748] gi|237864599|gb|EEP65889.1| hypothetical protein VEIDISOL_00693 [Veillonella dispar ATCC 17748] Length = 62 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK +R K SQ+ K +G+ T N+E+ R+ P++ +KI++V D I Sbjct: 1 MKYTLKMLRASKNWSQLTASKAIGVSVDTWGNWERKRSYPDVPHIKKIQEVFGVTYDDII 60 Query: 174 F 174 F Sbjct: 61 F 61 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 21/57 (36%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K +R + N +Q + +E + + ++ + +++D I Sbjct: 5 LKMLRASKNWSQLTASKAIGVSVDTWGNWERKRSYPDVPHIKKIQEVFGVTYDDIIF 61 >gi|229077190|ref|ZP_04209887.1| transcriptional regulator [Bacillus cereus Rock4-18] gi|228706117|gb|EEL58409.1| transcriptional regulator [Bacillus cereus Rock4-18] Length = 171 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 MSQ E + + ++SN+E R P+I + + LD + GD I+ + +++ Sbjct: 1 MSQEELAAKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDLVKGDVKIMKEELQK 60 Query: 187 A 187 + Sbjct: 61 S 61 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 +Q+E+A + +++ +EN I L + + +S D + G+V + E Sbjct: 1 MSQEELAAKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDLVKGDVKIMKEELQK 60 Query: 105 N 105 + Sbjct: 61 S 61 >gi|255103257|ref|ZP_05332234.1| hypothetical protein CdifQCD-6_20765 [Clostridium difficile QCD-63q42] Length = 112 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 34/101 (33%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +RK Q +M + ++ E G + R + E+ ++ +W+ G Sbjct: 3 KRLKTLRKELGLNQTQMGNKLFLSQDHISSLETGRRDLTDRIINDICKEFNVNENWLRTG 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 E + + D + + + + + Sbjct: 63 EGDIFQDPTLDMDFDDDIKEMLRMISKLSPEAQKRLYNVAE 103 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 36/82 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK++RK+ G++Q + G L + +S+ E GR + I + + +W+ Sbjct: 1 MNKRLKTLRKELGLNQTQMGNKLFLSQDHISSLETGRRDLTDRIINDICKEFNVNENWLR 60 Query: 174 FGDEVIVPKSIKRAKGNQSSKK 195 G+ I + K+ Sbjct: 61 TGEGDIFQDPTLDMDFDDDIKE 82 >gi|170722460|ref|YP_001750148.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760463|gb|ACA73779.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 114 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ R+A TQ ++ AV+ E G S+ L L + Y D + Sbjct: 11 IGRQLAAYRRACRLTQAKVGEYLKISGEAVSRLERGEVELSVSKLLKLADLYGCPADELL 70 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 P+ IG +L + R+ ++Q + G+ L + +S E+G + K+ + D Sbjct: 8 PHHIGRQLAAYRRACRLTQAKVGEYLKISGEAVSRLERGEVELSVSKLLKLADLYGCPAD 67 Query: 171 WIY 173 + Sbjct: 68 ELL 70 >gi|146337220|ref|YP_001202268.1| putative transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190026|emb|CAL74018.1| conserved hypothetical protein; putative transcriptional regulatory protein HTH type [Bradyrhizobium sp. ORS278] Length = 140 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 5/104 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG+R++ R +Q+++ + +E G + ++ + Sbjct: 11 KHVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQISEVLQVPVSF 70 Query: 90 IYDGEVI-----DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +++G + E + D A L R + Sbjct: 71 LFEGVPSGGTNGEAFGEGASPAYVSDFLATSEGLALTRAFTRIH 114 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R++ R GMSQ + G+ LG+ + YE+G ++I +V + + +++ G Sbjct: 15 SRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQISEVLQVPVSFLFEG 74 >gi|113867425|ref|YP_725914.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha H16] gi|113526201|emb|CAJ92546.1| shikimate kinase containing a XRE-type HTH DNA-binding domain [Ralstonia eutropha H16] Length = 313 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 31/82 (37%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE 65 E + + E Y +G RI+ +R + ++K++A GA E + E Sbjct: 12 ETEADTRPAGDAPAAANAERDPYLTLLGERIRSLRASRGMSRKDLARGAGVSERYLANLE 71 Query: 66 NGMCSTSIRYALYLRNEYEISF 87 G + S+ + ++ Sbjct: 72 TGTGNASVLLLRQVARALDVPL 93 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 R++S+R +GMS+ + + G+ L+N E G + R++ + L Sbjct: 40 ERIRSLRASRGMSRKDLARGAGVSERYLANLETGTGNASVLLLRQVARALDVPL 93 >gi|119946356|ref|YP_944036.1| DNA-binding transcriptional regulator [Psychromonas ingrahamii 37] gi|119864960|gb|ABM04437.1| predicted DNA-binding transcriptional regulator, helix-turn-helix domain [Psychromonas ingrahamii 37] Length = 208 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R+K+IRK+ T +E + S ++ EN S + + L +I + Sbjct: 28 KLGERLKEIRKSFGLTLEEASKKTGLARSTLSKIENEQISPTFQAMQKLTRGLQIDLPQL 87 Query: 91 Y 91 + Sbjct: 88 F 88 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 6/109 (5%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + +++P +G RLK IRK G++ E K G+ STLS E + P Sbjct: 10 YPSMKISNDRGSDKIEPVKLGERLKEIRKSFGLTLEEASKKTGLARSTLSKIENEQISPT 69 Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + +K+ + + L ++ P A G + ++ + K Sbjct: 70 FQAMQKLTRGLQIDLPQLF------APPKQVSATGRRDITRNNEGKAHP 112 >gi|41406396|ref|NP_959232.1| hypothetical protein MAP0298 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394745|gb|AAS02615.1| hypothetical protein MAP_0298 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 502 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ +R+ TQ +A S VN EN ++ L L +++ + Sbjct: 35 GARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPTQYF 92 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 GARL+ +R+++G++Q+ + LG+ S ++ E + + + + + Sbjct: 33 FAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPTQYF 92 >gi|296168067|ref|ZP_06850133.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896874|gb|EFG76502.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 471 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 20/132 (15%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R +Q +A S +N E+ + ++ L + + + Sbjct: 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDA---- 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI----EFGKLLGMPNSTLSNYE 147 T D + A L+ + D+ + E +L+G + Sbjct: 62 ------------TFFASQDDTRLVAELREVTMDRDLDIDVDPGEVAELVGSHPALARAVV 109 Query: 148 QGRTIPEIKPAR 159 I A+ Sbjct: 110 NLHRRYRITTAQ 121 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 35/84 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+R++ +R ++G SQ ++L + S L+ E + +I +V Sbjct: 1 MSKTFVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 + D+ + ++ ++ Sbjct: 61 ATFFASQDDTRLVAELREVTMDRD 84 >gi|291561595|emb|CBL40394.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 157 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 26/67 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ +R +Q ++A N V+ +E L +E+S D++ + Sbjct: 4 KTLRTLRAEKGFSQGQLAKAINVSPGNVSDWETDKSKPGYNALAALARIFEVSADYLLEL 63 Query: 94 EVIDRRY 100 +V + Sbjct: 64 DVSPEKK 70 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 33/81 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+++R +KG SQ + K + + +S++E ++ P + ++ + D++ Sbjct: 1 MFSKTLRTLRAEKGFSQGQLAKAINVSPGNVSDWETDKSKPGYNALAALARIFEVSADYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSS 193 D K + + Sbjct: 61 LELDVSPEKKGVDLSDYKNEQ 81 >gi|228920493|ref|ZP_04083838.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839123|gb|EEM84419.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 404 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ +A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTALA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + + K++ Sbjct: 63 EEDEGEIVELIQKMEPLIKANKCDEVYKTL 92 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + S LS E G+ P +K + I + + + ++ Sbjct: 6 EKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 DE + + I++ + + K + K+ P Sbjct: 65 DEGEIVELIQKMEPLIKANKCDEVYKTLLP 94 >gi|229166643|ref|ZP_04294395.1| Transcriptional regulator, Xre [Bacillus cereus AH621] gi|228616897|gb|EEK73970.1| Transcriptional regulator, Xre [Bacillus cereus AH621] Length = 404 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ N+ ++ Sbjct: 4 LGEKIKTLRKEKKLTQTELA-GSELTKSMLSQIENGKATPSMKALQYIANKLGCETSFLL 62 Query: 92 DGEVID 97 + + ++ Sbjct: 63 EEDDVE 68 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I ++ Sbjct: 6 EKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKALQYIANKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + + I+ K K +K D+ Sbjct: 65 DDVEIVELIQ--KMEPLIKANKCDE 87 >gi|226310383|ref|YP_002770277.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226093331|dbj|BAH41773.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 189 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 21 ITPEI---RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 + PE +Q VG +K IRK + + ++++ + + + E G + +I Sbjct: 1 MNPETDDPKQVVLQVGGVLKKIRKEKHLSLEDLSELSGVSKLTLGNIERGETNPTIGVLW 60 Query: 78 YLRNEYEISFDWIYDGEV 95 + I ++ E Sbjct: 61 KISKCLSIPLLALFSTEN 78 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK IRK+K +S + +L G+ TL N E+G T P I KI + L ++ + Sbjct: 19 LKKIRKEKHLSLEDLSELSGVSKLTLGNIERGETNPTIGVLWKISKCLSIPLLALFSTEN 78 Query: 178 VI 179 + Sbjct: 79 SV 80 >gi|225378702|ref|ZP_03755923.1| hypothetical protein ROSEINA2194_04372 [Roseburia inulinivorans DSM 16841] gi|225209539|gb|EEG91893.1| hypothetical protein ROSEINA2194_04372 [Roseburia inulinivorans DSM 16841] Length = 69 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RIK++RKAN +Q E+A + E G + S+ A + + + ++ + ++D Sbjct: 3 NRIKELRKANKLSQGELADIVGTTRQTITSIEVGKYTASLGLAYKIAHYFNLTIEEVFD 61 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 32/69 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +RK +SQ E ++G T+++ E G+ + A KI ++ ++ Sbjct: 1 MKNRIKELRKANKLSQGELADIVGTTRQTITSIEVGKYTASLGLAYKIAHYFNLTIEEVF 60 Query: 174 FGDEVIVPK 182 ++ + Sbjct: 61 DFSDLESEE 69 >gi|218677823|ref|ZP_03525720.1| putative HTH transcriptional regulator [Rhizobium etli CIAT 894] Length = 110 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +++ IR A TQ MA S +NL E +++ L L + Y + + + Sbjct: 9 GPKVRRIRNALMLTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVDLEEL 66 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++ IR ++Q + L + S L+ E+ + ++ K+ V + L+ + Sbjct: 12 VRRIRNALMLTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVDLEEL 66 >gi|213019906|ref|ZP_03335697.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994507|gb|EEB55164.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 314 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 37/102 (36%), Gaps = 1/102 (0%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ + +G +IK+ R TQK++A + ++ +E G + + + Sbjct: 161 VEEKVGSIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIA 220 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 I+ + + + ++ Y + +R Sbjct: 221 ETLSINIMDLLELTEDADDKVENELPNLIEEYKEIES-QELR 261 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 21/62 (33%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ R TQK++A V +E G+ SI + + + Sbjct: 18 QIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVDIIDL 77 Query: 91 YD 92 Sbjct: 78 IP 79 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y I +++S R +G +Q + +G+ + YE+G I+ I +V + Sbjct: 17 YQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVDIID 76 Query: 172 IY 173 + Sbjct: 77 LI 78 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 IS D I + E V K IG ++K R +G +Q + + + + Sbjct: 143 GISVD-IVAKTIGLSVDECVEEKVGSIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEI 201 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 SNYEQGR ++ I + ++ + E K Sbjct: 202 SNYEQGRVAIPLEKLYAIAETLSINIMDLLELTEDADDKVENE 244 >gi|330501217|ref|YP_004378086.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328915503|gb|AEB56334.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 182 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 DVG R++ IRK +Q+E+A A S +++ E S SI Sbjct: 2 DVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK 49 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 26/43 (60%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 L+SIRK KG+SQ E K G+ NST+S E+ P I +K Sbjct: 7 LQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKK 49 >gi|325289203|ref|YP_004265384.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964604|gb|ADY55383.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 117 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 39/92 (42%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G IK+ R NN TQ+E+A A+ + E G + SI L Sbjct: 1 MELDRKRLGGAIKNARLENNLTQEELAELADIATVHMKQLEAGSRNPSIEVLYKLVRLLN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 +S D ++ E D R ++RL+ + Sbjct: 61 LSVDAVFFPERADGRELQHKIERRLNHCSPHE 92 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD +G +K+ R + ++Q E +L + + E G P I+ K+ ++ Sbjct: 1 MELDRKRLGGAIKNARLENNLTQEELAELADIATVHMKQLEAGSRNPSIEVLYKLVRLLN 60 Query: 167 KHLDWIYFGD 176 +D ++F + Sbjct: 61 LSVDAVFFPE 70 >gi|300855490|ref|YP_003780474.1| hypothetical protein CLJU_c23140 [Clostridium ljungdahlii DSM 13528] gi|300435605|gb|ADK15372.1| conserved hypothetical protein with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 184 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 37/94 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ +GT++K+IR N + +++ + + E G+ + ++ + + Sbjct: 1 MKNLNLIIGTKLKNIRLRRNLSLDDVSKLTGVSKGMLGQIERGLSNPTVSTLWKISTGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +SF + + D + + L +L Sbjct: 61 VSFSSFINEKEDDLKVIHQDDIVPLLEDNNRMKL 94 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK+IR + +S + KL G+ L E+G + P + KI K E Sbjct: 12 LKNIRLRRNLSLDDVSKLTGVSKGMLGQIERGLSNPTVSTLWKISTGLKVSFSSFINEKE 71 Query: 178 VIVP 181 + Sbjct: 72 DDLK 75 >gi|308235749|ref|ZP_07666486.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114657|ref|YP_003985878.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946151|gb|ADP38855.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 66 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I +RK + TQ+E+A + E G S+ A + +++S + I+ E Sbjct: 5 IFRLRKQHKITQEELANEVGVTRQTITSIETGKYIASLPLAFKIAKFFDMSIEEIFSIEE 64 Query: 96 ID 97 D Sbjct: 65 DD 66 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + +RK ++Q E +G+ T+++ E G+ I + A KI + ++ I+ Sbjct: 1 MKNTIFRLRKQHKITQEELANEVGVTRQTITSIETGKYIASLPLAFKIAKFFDMSIEEIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 SIEED 65 >gi|283795716|ref|ZP_06344869.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291077396|gb|EFE14760.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 266 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY--ALYLRNEYEISFDW 89 + R+KD+R T +++A + +SA+ +E G I + + L YE++ D+ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYE-GDNFKDISHYALIELAKFYEVTVDY 63 Query: 90 IYDGEVIDRRYEDV 103 + Sbjct: 64 LLGRSQTKNHPNAD 77 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + S L +YE ++ + + +D Sbjct: 3 LSIQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDNFKDISHYALIELAKFYEVTVD 62 Query: 171 WIY 173 ++ Sbjct: 63 YLL 65 >gi|222085057|ref|YP_002543586.1| hypothetical protein Arad_1139 [Agrobacterium radiobacter K84] gi|221722505|gb|ACM25661.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 207 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 20/59 (33%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++ +R + +A + + + E G S +I + ++ + Sbjct: 26 GQNLRRLRTRRGYSLDRLAKISGVSRAMLGQVETGKSSPTISILWKIAAALDVPCGSLI 84 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 L+ +R +G S K+ G+ + L E G++ P I KI Sbjct: 27 QNLRRLRTRRGYSLDRLAKISGVSRAMLGQVETGKSSPTISILWKIAAALDVP 79 >gi|163858543|ref|YP_001632841.1| DNA-binding [Bordetella petrii DSM 12804] gi|163262271|emb|CAP44574.1| conserved hypothetical protein, DNA-binding [Bordetella petrii] Length = 94 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A GA +++ R +G++Q L G+ S + E+G +P + +I + + + Sbjct: 24 AFGAAVRAARMQRGLAQETLAYLAGIERSHMGKIERGGHLPTLVLILRIAKALECSAAEL 83 Query: 173 YFGDEVIVPKS 183 E +PK Sbjct: 84 IAATEANLPKD 94 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 21/62 (33%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + G ++ R Q+ +A A S + E G ++ L + E S Sbjct: 23 QAFGAAVRAARMQRGLAQETLAYLAGIERSHMGKIERGGHLPTLVLILRIAKALECSAAE 82 Query: 90 IY 91 + Sbjct: 83 LI 84 >gi|190014814|ref|YP_001967578.1| orf_Bo182 [Agrobacterium tumefaciens] gi|71849617|gb|AAZ50565.1| orf_Bo182 [Agrobacterium tumefaciens] Length = 140 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +VG RI+ RK +Q+ +A V +E G + ++ + Sbjct: 14 EVGARIRLKRKPIGMSQQSLAGKLGVTFQQVQKYEKGTNRVGASRLSQIATALDVPMSYF 73 Query: 91 YDGEVIDRRYEDVTN 105 +DG +R+ +D + Sbjct: 74 FDGNQGERQDDDNPH 88 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ RK GMSQ LG+ + YE+G +I + + + G Sbjct: 17 ARIRLKRKPIGMSQQSLAGKLGVTFQQVQKYEKGTNRVGASRLSQIATALDVPMSYFFDG 76 Query: 176 DE 177 ++ Sbjct: 77 NQ 78 >gi|66769288|ref|YP_244050.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66574620|gb|AAY50030.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 460 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + +G R++ +R+ + TQ E+A S +N E ++ L+ Sbjct: 1 MPQSSALLRHQLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRPLTLAIQQRLK 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 D + + E + + L A L+ + + Q+ LL + Sbjct: 61 TALG-DLDGLLSADDPAALVEPLDEALRALGHGLSAAELRML--TGNLPQVAQA-LLDLQ 116 Query: 140 NSTLSNYEQ-----------GRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + E+ +P + P +++ + +++ DE Sbjct: 117 RAHTHLQERTAALEVQVGAEHAALPSLSPGEQVRDYFNRAHNYLPELDE 165 >gi|21230716|ref|NP_636633.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188992439|ref|YP_001904449.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|21112308|gb|AAM40557.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167734199|emb|CAP52407.1| transcriptional regulator [Xanthomonas campestris pv. campestris] Length = 460 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + +G R++ +R+ + TQ E+A S +N E ++ L+ Sbjct: 1 MPQSSALLRHQLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRPLTLAIQQRLK 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNK-KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 D + + E + + L A L+ + + Q+ LL + Sbjct: 61 TALG-DLDGLLSADDPAALVEPLDEALRALGHGLSAAELRML--TGNLPQVAQA-LLDLQ 116 Query: 140 NSTLSNYEQ-----------GRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 + E+ +P + P +++ + +++ DE Sbjct: 117 RAHTHLQERTAALEVQVGAEHAALPSLSPGEQVRDYFNRAHNYLPELDE 165 >gi|325529272|gb|EGD06223.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 183 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V R++ +R + +Q+E+A A ++L E G S S+ L +S Sbjct: 4 EVAERLRFVRNKHALSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRR 99 + E+++ R Sbjct: 64 FTFELVESR 72 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R +SQ E K G+ N T+S EQGR P + +K+ + L + Sbjct: 7 ERLRFVRNKHALSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFFTF 66 Query: 176 DEVIVPKSIKRAKG 189 + V + R Sbjct: 67 ELVESRTVVSRRDE 80 >gi|324327259|gb|ADY22519.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK+ R N TQ+++A +N E G + S++ A + + D ++ E Sbjct: 6 KIKEYRAKLNMTQEDLAKQVGVRRETINHLEKGKYNPSLQLAHDIARVLHSTIDEVFIFE 65 Query: 95 VI 96 Sbjct: 66 DE 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 34/67 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A ++K R M+Q + K +G+ T+++ E+G+ P ++ A I +V +D Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKQVGVRRETINHLEKGKYNPSLQLAHDIARVLHSTIDE 60 Query: 172 IYFGDEV 178 ++ ++ Sbjct: 61 VFIFEDE 67 >gi|284045488|ref|YP_003395828.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949709|gb|ADB52453.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 84 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I+ +R+ +Q+ +A A ++ E G L + +S +Y Sbjct: 13 LARTIRQLRRDRELSQEALANAAGVHPKHLSEIERGNKDPRASTVARLADALGVSIGELY 72 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY---F 174 ++ +R+D+ +SQ G+ LS E+G P ++ + +Y Sbjct: 17 IRQLRRDRELSQEALANAAGVHPKHLSEIERGNKDPRASTVARLADALGVSIGELYGQPG 76 Query: 175 GDEV 178 GDE Sbjct: 77 GDEP 80 >gi|228969150|ref|ZP_04130047.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228790533|gb|EEM38237.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 116 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K++R + TQ+E+A G + + FEN ++ + + ++++ D++ Sbjct: 3 FGEKLKELRGSR--TQEEVAKGIEISRARYSHFENDRNEPDLQLIQKIADYHKVTTDYLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 R ++ K + + + Sbjct: 61 GRAEDSRLTKEDDEKATEMAKRLEKLIAEL 90 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + +Q E K + + + S++E R P+++ +KI K D+ Sbjct: 1 MTFGEKLKELRGSR--TQEEVAKGIEISRARYSHFENDRNEPDLQLIQKIADYHKVTTDY 58 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + E K + +K+ +K Sbjct: 59 LLGRAEDSRLTKEDDEKATEMAKRLEK 85 >gi|228474760|ref|ZP_04059491.1| helix-turn-helix domain protein [Staphylococcus hominis SK119] gi|228271423|gb|EEK12791.1| helix-turn-helix domain protein [Staphylococcus hominis SK119] Length = 200 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 6/162 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G IK+IRK+ N TQ +++ ++ ++ ENG S + E++ Sbjct: 8 QLGLIIKNIRKSKNMTQSKLSEKTGFSQNTISNHENGRRSIGEKEVEKYAKALEVT---- 63 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-G 149 + + + TN + G + I + K + + Sbjct: 64 -KKSIYNHLEDISTNDFNITKVEFGKMVNKILDQENYDIDSLIKSTKLSKPQFQSVLNGY 122 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 I + + +I+ + V + K Q Sbjct: 123 IGEIPIHKLTALCEFLNISPSYIFKHNNVTEHTYEEYVKARQ 164 >gi|189464274|ref|ZP_03013059.1| hypothetical protein BACINT_00613 [Bacteroides intestinalis DSM 17393] gi|189438064|gb|EDV07049.1| hypothetical protein BACINT_00613 [Bacteroides intestinalis DSM 17393] Length = 184 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K + R++ +R T +++A + L E+G S+ + Y Sbjct: 1 MDEQIKQIAERLRGLRDVLELTAEDIARECDISAEEYRLAESGEFDISVSMLQKIARRYG 60 Query: 85 ISFDWIYDGEVIDRRYE 101 +S D + GE Sbjct: 61 VSLDALMFGEEPKMSSY 77 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 31/86 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R ++ + + + E G + +KI + LD + FG Sbjct: 10 ERLRGLRDVLELTAEDIARECDISAEEYRLAESGEFDISVSMLQKIARRYGVSLDALMFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + G +S + K K Sbjct: 70 EEPKMSSYFLTRAGKGTSIERTKAYK 95 >gi|169631162|ref|YP_001704811.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169243129|emb|CAM64157.1| Possible transcriptional regulator [Mycobacterium abscessus] Length = 139 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G I+ R+A + +++A A ++ E G+ S + +S + + Sbjct: 17 DIGGFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRRPSAEVLNQIAKALRVSAEVL 76 Query: 91 Y 91 Y Sbjct: 77 Y 77 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ R+ +S + + G+ N LS E+G P + +I + + + +Y Sbjct: 21 FIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRRPSAEVLNQIAKALRVSAEVLY 77 >gi|220928392|ref|YP_002505301.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998720|gb|ACL75321.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 133 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD- 92 RIK +R ++QKE+A + A++ +E G + + +S D++ Sbjct: 6 ERIKSLRNVKRQSQKEVAKALGKSREAISKYELGEREPDPDVIVQFSKHFNVSSDYMLGI 65 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLK 119 + I+ + YA LK Sbjct: 66 TDHIENIPSSERKPYSSELYAFEKYLK 92 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + + R+KS+R K SQ E K LG +S YE G P+ + + D Sbjct: 1 MHILPERIKSLRNVKRQSQKEVAKALGKSREAISKYELGEREPDPDVIVQFSKHFNVSSD 60 Query: 171 WIYFGDEVIVPKSIKRAK 188 ++ + I K Sbjct: 61 YMLGITDHIENIPSSERK 78 >gi|114762993|ref|ZP_01442423.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114544317|gb|EAU47325.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 127 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E G S + + E+ + + Sbjct: 9 VGKRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADALEVPVSFFF 68 Query: 92 DG 93 +G Sbjct: 69 EG 70 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R GM+Q + + +G+ + YE G I + + + + G Sbjct: 11 KRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADALEVPVSFFFEG 70 >gi|329117976|ref|ZP_08246689.1| ribonuclease T [Neisseria bacilliformis ATCC BAA-1200] gi|327465864|gb|EGF12136.1| ribonuclease T [Neisseria bacilliformis ATCC BAA-1200] Length = 137 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 6/110 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V +I+ +R+ NN +Q+EMA N +S+ + E + L ++I + Sbjct: 3 VNDKIRALRELNNWSQEEMAERMNISKSSYSRLERDESKLDLAKLEKLAAIFKIDVAELI 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR------LKSIRKDKGMSQIEFGKL 135 E TN G ++ ++ +Q Sbjct: 63 TREDKGMVLLIGTNSGGNHTNYYGNTENMTAEIEKLKLSLQHAQEMLAAK 112 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 31/66 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +++++R+ SQ E + + + S+ S E+ + ++ K+ + K + Sbjct: 1 MAVNDKIRALRELNNWSQEEMAERMNISKSSYSRLERDESKLDLAKLEKLAAIFKIDVAE 60 Query: 172 IYFGDE 177 + ++ Sbjct: 61 LITRED 66 >gi|313898507|ref|ZP_07832044.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956889|gb|EFR38520.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 71 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK R N +Q+E+A + L E G + +I+ + + D ++ + Sbjct: 5 KIKMARMELNMSQEELAGKVGATRQTIGLIEAGRYNPTIKLCIKICIALHKHLDDLFWED 64 Query: 95 VIDRRY 100 D+ Sbjct: 65 DYDKEE 70 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R + MSQ E +G T+ E GR P IK KI KHLD +++ D+ Sbjct: 6 IKMARMELNMSQEELAGKVGATRQTIGLIEAGRYNPTIKLCIKICIALHKHLDDLFWEDD 65 Query: 178 VIVPK 182 + Sbjct: 66 YDKEE 70 >gi|313205461|ref|YP_004044118.1| helix-turN-helix domain protein [Paludibacter propionicigenes WB4] gi|312444777|gb|ADQ81133.1| helix-turn-helix domain protein [Paludibacter propionicigenes WB4] Length = 266 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G RI ++RK +Q+E+A ++ E G + I L S D Sbjct: 7 QKQIGQRITELRKTKGLSQEELAKSIGFSRPSLAQVELGNRNIGILEMQKLATVLGFSLD 66 Query: 89 WIYDGEVIDRRY 100 I + Sbjct: 67 DIMSENFNSKHE 78 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 31/71 (43%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 L IG R+ +RK KG+SQ E K +G +L+ E G I +K+ V Sbjct: 2 NNTLSQKQIGQRITELRKTKGLSQEELAKSIGFSRPSLAQVELGNRNIGILEMQKLATVL 61 Query: 166 KKHLDWIYFGD 176 LD I + Sbjct: 62 GFSLDDIMSEN 72 >gi|304315106|ref|YP_003850253.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302588565|gb|ADL58940.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 311 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 62/164 (37%), Gaps = 15/164 (9%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 + P ++ EY +I Y + G ++++R+ N + K++A A+ + Sbjct: 101 IAPETFRNMVVDGEYPEVIADRGGYYVQIDGRTLREVREEYNLSLKDLADLAHVSRKTIY 160 Query: 63 LFENGMCSTSIRYALYLRNEYEI----SFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +ENG+ S A+ L I S D + E + + + Sbjct: 161 KYENGLARASPETAMKLEEILNIRITLSIDILSVPERDEVEIRPRGRLGDI----GFGMI 216 Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 ++ R K L ++ +++ E+GR + + R++ Sbjct: 217 ETQRTPF----DAVAKELKFESTVITDLEKGR---DSRTLRRMA 253 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 4/79 (5%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 DGE + + ++D G L+ +R++ +S + L + T+ YE G Sbjct: 111 VDGEYPEVIADRGGYYVQID----GRTLREVREEYNLSLKDLADLAHVSRKTIYKYENGL 166 Query: 151 TIPEIKPARKIKQVTKKHL 169 + A K++++ + Sbjct: 167 ARASPETAMKLEEILNIRI 185 >gi|209515043|ref|ZP_03263912.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209504669|gb|EEA04656.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 183 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V TR++ IRK + +Q+E+A A ++L E S S+ L +S Sbjct: 4 EVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRR 99 + E+ +R Sbjct: 64 FTFELEAQR 72 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD- 176 L+ IRK G+SQ E K G+ N T+S EQ R P + +K+ + L + + Sbjct: 9 LQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFFTFEL 68 Query: 177 EVIVPKSIKRAKGNQSSKKSKK 198 E +RA +S + Sbjct: 69 EAQRSVVSRRADMPNLGNESIE 90 >gi|125717050|ref|YP_001034183.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125496967|gb|ABN43633.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 150 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK +R A TQ +A + ++AV +E+ + + + + +S D++ Sbjct: 4 VGERIKKLRIAQGFTQARLAEILHVSKAAVCKWESNTNLPKVMELKNMNSPFHVSADYLL 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + KK +L Sbjct: 64 GLANRSAIEQLGSEKKLKAMAGYLHQL 90 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 28/63 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R+K +R +G +Q ++L + + + +E +P++ + + D Sbjct: 1 MATVGERIKKLRIAQGFTQARLAEILHVSKAAVCKWESNTNLPKVMELKNMNSPFHVSAD 60 Query: 171 WIY 173 ++ Sbjct: 61 YLL 63 >gi|121595107|ref|YP_987003.1| XRE family transcriptional regulator [Acidovorax sp. JS42] gi|120607187|gb|ABM42927.1| transcriptional regulator, XRE family [Acidovorax sp. JS42] Length = 271 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW-- 89 G R++ R+ +Q ++A A ++ E G S S L L + ++ Sbjct: 16 FGERLRHWRQHRCLSQLDLAHAAEVSTRHLSCVETGRASPSRDMVLRLAHRLDVPLRERN 75 Query: 90 -IY--DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + G R + + D A R+ Sbjct: 76 ALLVAAGYAPMYRERPLDAPEMADARAAVQRI 107 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 G RL+ R+ + +SQ++ + LS E GR P ++ L Sbjct: 16 FGERLRHWRQHRCLSQLDLAHAAEVSTRHLSCVETGRASPSRDMVLRLAHRLDVPL 71 >gi|9630498|ref|NP_046933.1| CB [Enterobacteria phage N15] gi|1184742|gb|AAB81655.1| repressor protein [Enterobacteria phage N15] gi|3192717|gb|AAC19070.1| gp38 [Enterobacteria phage N15] gi|89158281|gb|ABD62892.1| cB [Cloning vector pJAZZ-KA] gi|124491097|gb|ABN12903.1| CB [Cloning vector pN15E4] gi|124491104|gb|ABN12909.1| CB [Cloning vector pN15E6] gi|205318621|gb|ACI02337.1| CB [Linear cloning vector pJAZZ-OK] gi|269974867|gb|ACZ55231.1| phage repressor cB [Cloning vector pJAZZ-OCmin] Length = 202 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 22/71 (30%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K R T K++A V E G S+ L L WI Sbjct: 9 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQWILY 68 Query: 93 GEVIDRRYEDV 103 G D V Sbjct: 69 GTESDPDRVPV 79 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G RLK+ R + ++ + + +G+ + N E+G +P ++ + + +K + Sbjct: 5 MKTRGERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQ 64 Query: 171 WIYFGDEVIVPKS 183 WI +G E + Sbjct: 65 WILYGTESDPDRV 77 >gi|56709057|ref|YP_165102.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680742|gb|AAV97407.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 188 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 8/61 (13%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY--------LRNE 82 ++G R++ IR+ +Q+ +A + S ++L E G + S+ L + Sbjct: 10 ELGQRLRVIRERAGLSQRALAKRSGIPNSTISLIEGGKINPSVSTLRRVLGGIPIGLSDF 69 Query: 83 Y 83 + Sbjct: 70 F 70 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 6/89 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK---KHLDWI 172 RL+ IR+ G+SQ K G+PNST+S E G+ P + R+ V L Sbjct: 13 QRLRVIRERAGLSQRALAKRSGIPNSTISLIEGGKINPSVSTLRR---VLGGIPIGLSDF 69 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + S A+ K K K Sbjct: 70 FAFEPEQEKASFYAAEDLTEIGKGKLSLK 98 >gi|24378588|ref|NP_720543.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24376441|gb|AAN57849.1|AE014858_1 putative transcriptional regulator [Streptococcus mutans UA159] Length = 304 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 12/107 (11%) Query: 30 KDVGTRIKDIRKANNKTQKEMA-IGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KD G +IK +R T++ + + + E+G + ++ A+Y+ ++ Sbjct: 3 KDFGKKIKSLRLEKGLTKEAVCLDESQLSTRQLTRIESGQSTPTLNKAVYIAGRLGVTLG 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 ++ DGE ++ K L +R Q + Sbjct: 63 YLTDGENVELPSRYKELKYLL-----------LRTPTYGDQQRLAEK 98 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 114 IGARLKSIRKDKGMSQIEFG-KLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G ++KS+R +KG+++ + L+ E G++ P + A I L ++ Sbjct: 5 FGKKIKSLRLEKGLTKEAVCLDESQLSTRQLTRIESGQSTPTLNKAVYIAGRLGVTLGYL 64 Query: 173 YFGDEVIVPKSIKRAK 188 G+ V +P K K Sbjct: 65 TDGENVELPSRYKELK 80 >gi|329119145|ref|ZP_08247836.1| helix-turn-helix domain protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464776|gb|EGF11070.1| helix-turn-helix domain protein [Neisseria bacilliformis ATCC BAA-1200] Length = 119 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K +G I R+ TQ+++A AV+ E G+ ++ + L ++ + Sbjct: 7 EINKRIGKAIAKYRQERGLTQEQVAEILQIGNEAVSRMERGLIMPNVVRLVELAEIFQCT 66 Query: 87 FDWIY 91 + Sbjct: 67 AADLL 71 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 29/58 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+++G++Q + ++L + N +S E+G +P + ++ ++ + + Sbjct: 14 KAIAKYRQERGLTQEQVAEILQIGNEAVSRMERGLIMPNVVRLVELAEIFQCTAADLL 71 >gi|320547844|ref|ZP_08042128.1| cro/CI family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320447604|gb|EFW88363.1| cro/CI family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 65 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +++ +RK +SQ E + LG+ T+ + E+GR ++ A KI + ++ I+ Sbjct: 1 METKIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNASLELAHKIAKYFGMTIEEIF 60 Query: 174 FGDEV 178 DE Sbjct: 61 IFDEE 65 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +I+++RKAN +Q E+A + E G + S+ A + + ++ + I+ Sbjct: 4 KIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNASLELAHKIAKYFGMTIEEIF 60 >gi|319745857|gb|EFV98148.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 153 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 38/110 (34%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Q ++ IK RK N TQKE+A +A++ +E G + + + + Sbjct: 11 KEQKMANLSDNIKYFRKQNKLTQKELARKLKIAPTAISAWEVGRNKPLMDNIEQMASIFG 70 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGK 134 I + E+ + I A + + + ++ + Sbjct: 71 IPKSKLLGDEIYKIQETASPELIPSTLQKINATSSQLEHKRQLIVLDTAE 120 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 K + +K RK ++Q E + L + + +S +E GR P + ++ + Sbjct: 11 KEQKMANLSDNIKYFRKQNKLTQKELARKLKIAPTAISAWEVGRNKPLMDNIEQMASIFG 70 Query: 167 KHL-----DWIYFGDEVIVPKSI 184 D IY E P+ I Sbjct: 71 IPKSKLLGDEIYKIQETASPELI 93 >gi|300904120|ref|ZP_07121994.1| transcriptional repressor DicA [Escherichia coli MS 84-1] gi|301307000|ref|ZP_07213040.1| transcriptional repressor DicA [Escherichia coli MS 124-1] gi|300403913|gb|EFJ87451.1| transcriptional repressor DicA [Escherichia coli MS 84-1] gi|300837790|gb|EFK65550.1| transcriptional repressor DicA [Escherichia coli MS 124-1] gi|315253246|gb|EFU33214.1| transcriptional repressor DicA [Escherichia coli MS 85-1] Length = 135 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 41/91 (45%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G R+ + RK+ ++Q E +L G+ + T+S +E+ T P K + K Sbjct: 1 MDTRTLGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQPVGKRLFALADALKCS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 W+ FGDE P + S K+ Sbjct: 61 PTWLMFGDEDKAPVPAQELHVETELTPSHKE 91 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 29/92 (31%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G R+ RK TQ+E A A ++ +E + L + + S W Sbjct: 4 RTLGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQPVGKRLFALADALKCSPTW 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + G+ + L + Sbjct: 64 LMFGDEDKAPVPAQELHVETELTPSHKELIEL 95 >gi|290579576|ref|YP_003483968.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|254996475|dbj|BAH87076.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 304 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 12/107 (11%) Query: 30 KDVGTRIKDIRKANNKTQKEMA-IGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KD G +IK +R T++ + + + E+G + ++ A+Y+ ++ Sbjct: 3 KDFGKKIKSLRLEKGLTKEAVCLDESQLSTRQLTRIESGQSTPTLNKAVYIAGRLGVTLG 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 ++ DGE ++ K L +R Q + Sbjct: 63 YLTDGENVELPSRYKELKYLL-----------LRTPTYGDQQRLAEK 98 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 114 IGARLKSIRKDKGMSQIEFG-KLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G ++KS+R +KG+++ + L+ E G++ P + A I L ++ Sbjct: 5 FGKKIKSLRLEKGLTKEAVCLDESQLSTRQLTRIESGQSTPTLNKAVYIAGRLGVTLGYL 64 Query: 173 YFGDEVIVPKSIKRAK 188 G+ V +P K K Sbjct: 65 TDGENVELPSRYKELK 80 >gi|296122323|ref|YP_003630101.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296014663|gb|ADG67902.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 196 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 7/89 (7%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY--D 92 R++++R+ N + +++ + S ++ E + ++ + + ++ + Sbjct: 22 RVRELRQQNGWSLDQLSSASGVSRSMLSQIERNQANPTLAVTARIAQAFGLTIGQLVETP 81 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 V + L ++++ Sbjct: 82 HVVPGIHVIRGDDPAHLYRSDEDCEIRTL 110 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R+ G S + G+ S LS E+ + P + +I Q + + Sbjct: 21 HRVRELRQQNGWSLDQLSSASGVSRSMLSQIERNQANPTLAVTARIAQAFGLTIGQLVET 80 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKD 199 V+ + R +S +D Sbjct: 81 PHVVPGIHVIRGDDPAHLYRSDED 104 >gi|229000894|ref|ZP_04160369.1| transcriptional regulator [Bacillus mycoides Rock3-17] gi|228758859|gb|EEM07928.1| transcriptional regulator [Bacillus mycoides Rock3-17] Length = 171 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 MSQ E + + ++SN+E R P+I + + LD + GD I+ + +++ Sbjct: 1 MSQEELAAKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDLVKGDVKIMKEELQK 60 Query: 187 A 187 + Sbjct: 61 S 61 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 +Q+E+A + +++ +EN I L + + +S D + G+V + E Sbjct: 1 MSQEELAAKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDLVKGDVKIMKEELQK 60 Query: 105 N 105 + Sbjct: 61 S 61 >gi|228983647|ref|ZP_04143850.1| hypothetical protein bthur0001_3690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229021982|ref|ZP_04178541.1| hypothetical protein bcere0029_3480 [Bacillus cereus AH1272] gi|229154155|ref|ZP_04282279.1| hypothetical protein bcere0010_3570 [Bacillus cereus ATCC 4342] gi|228629291|gb|EEK85994.1| hypothetical protein bcere0010_3570 [Bacillus cereus ATCC 4342] gi|228739322|gb|EEL89759.1| hypothetical protein bcere0029_3480 [Bacillus cereus AH1272] gi|228776085|gb|EEM24448.1| hypothetical protein bthur0001_3690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324324489|gb|ADY19749.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 64 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I ++R NN +Q +A +N EN S+ A L + D ++ Sbjct: 3 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLFLY 62 Query: 94 EV 95 ++ Sbjct: 63 KM 64 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 1 MKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|282600636|ref|ZP_05979286.2| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] gi|282571663|gb|EFB77198.1| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] Length = 120 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++++ RK TQ+E++ ++ + E G + S L IS D + Sbjct: 11 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSN 145 + ++ N+ ++ + ++ +Q +L + N Sbjct: 71 N--PDISLEDEGVNQMKMLYSSCPPEMRD--TLLHHTQETVKELTELSEKFEMN 120 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D A+G +++ RK+K ++Q E L + ++N E+G+ P R + +V L Sbjct: 7 DLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISL 66 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSS 193 D + D + + + + K SS Sbjct: 67 DTLINPDISLEDEGVNQMKMLYSS 90 >gi|225028236|ref|ZP_03717428.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353] gi|224954415|gb|EEG35624.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353] Length = 490 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+L + + + RK++ ++Q + ++ G+ +S E P I + I +V Sbjct: 1 MKKLSITKMADTIIAKRKEQKLTQAQLAEMTGINRGMISRLESCDYTPSIDQLQSIAEVL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGN 190 + ++ D+V K + K N Sbjct: 61 NFEVVDLFEDDKVTSSKPVLDKKYN 85 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 23/70 (32%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 RK TQ ++A ++ E+ + SI + +++ + + Sbjct: 17 RKEQKLTQAQLAEMTGINRGMISRLESCDYTPSIDQLQSIAEVLNFEVVDLFEDDKVTSS 76 Query: 100 YEDVTNKKRL 109 + K + Sbjct: 77 KPVLDKKYNI 86 >gi|206559412|ref|YP_002230173.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|206561186|ref|YP_002231951.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198035450|emb|CAR51327.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037228|emb|CAR53149.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 206 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 36/101 (35%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 + + I + + + R++ +R T +A + S ++L E S + Sbjct: 2 KESAITAADDTGINERIARRVRGLRAVRGYTLDTLAARSGVSRSMISLIERASASPTAVV 61 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 L +S ++ G+ D + + + + + A Sbjct: 62 LDKLAAGLGVSLAGLFGGDRDDAPAQPLARRAQQAEWRDPA 102 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 28/80 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +G + G+ S +S E+ P K+ L ++ G Sbjct: 20 RRVRGLRAVRGYTLDTLAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAGLFGG 79 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 D P + Q+ + Sbjct: 80 DRDDAPAQPLARRAQQAEWR 99 >gi|187779352|ref|ZP_02995825.1| hypothetical protein CLOSPO_02948 [Clostridium sporogenes ATCC 15579] gi|187772977|gb|EDU36779.1| hypothetical protein CLOSPO_02948 [Clostridium sporogenes ATCC 15579] Length = 71 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +RK+ M Q E KL+G+ T+ + E + P +K A I +V K ++ ++ Sbjct: 12 IHELRKEHNMKQEELAKLVGVRRETIGHLENEKYNPSLKLAMDIAKVFGKSVEEVF 67 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + T+I ++RK +N Q+E+A + EN + S++ A+ + + S + Sbjct: 5 MPRLKTKIHELRKEHNMKQEELAKLVGVRRETIGHLENEKYNPSLKLAMDIAKVFGKSVE 64 Query: 89 WIYD 92 ++ Sbjct: 65 EVFQ 68 >gi|329767054|ref|ZP_08258582.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341] gi|328837779|gb|EGF87404.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341] Length = 181 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R N TQ+E+ + + ++ E + S S+ + + + Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 Query: 92 DGEVIDRRYEDVTNKK 107 D E ++ + Sbjct: 64 DKESTSQKVYYSLEDQ 79 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y+IG RLK +R K ++Q E G+ + +S E+ P ++ I QV Sbjct: 1 MYSIGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPK 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + D+ + + + +Q+S + + Sbjct: 61 DFF--DKESTSQKVYYSLEDQTSYEETDE 87 >gi|326332010|ref|ZP_08198295.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium Broad-1] gi|325950148|gb|EGD42203.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium Broad-1] Length = 147 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G +K+ R + + +++A A ++ E G+ S + IS + Sbjct: 13 LGEYLKEQRISAEMSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIAKALRISAE 69 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK R MS + G+ N LS E+G P + ++I + + + +Y Sbjct: 15 EYLKEQRISAEMSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIAKALRISAEQVYVR 74 Query: 176 DEVIVPKS 183 ++ P S Sbjct: 75 AGILSPDS 82 >gi|182677117|ref|YP_001831263.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633000|gb|ACB93774.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 29/69 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++ +RKA N + E++ + +S ++ E + ++ L ++S + + Sbjct: 22 QLGKTVQRLRKAYNLSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 81 Query: 91 YDGEVIDRR 99 + Sbjct: 82 LQATEDEPF 90 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 ++ +RK +S E + G+ S +S E+ T P + ++ Q ++ + Sbjct: 25 KTVQRLRKAYNLSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVLQA 84 Query: 174 FGDEVIVPKSIK 185 DE + K+ K Sbjct: 85 TEDEPFLEKASK 96 >gi|168699329|ref|ZP_02731606.1| DNA-binding protein, putative [Gemmata obscuriglobus UQM 2246] Length = 89 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 I + G R++++R N TQ ++ A + V E G + Sbjct: 2 AIPAVAKKNIRTGFGKRLRELRIDKNLTQSQLGERAGMMYQDVAKLERGEREPMWATVIR 61 Query: 79 LRNEYEISFDWIYDGEVI 96 L + + D E Sbjct: 62 LADALGVRADDFRTLEDP 79 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G RL+ +R DK ++Q + G+ GM ++ E+G P ++ D Sbjct: 15 FGKRLRELRIDKNLTQSQLGERAGMMYQDVAKLERGEREPMWATVIRLADALGVRADDFR 74 Query: 174 FGDEVIVP 181 ++ + Sbjct: 75 TLEDPLAD 82 >gi|157692960|ref|YP_001487422.1| transcriptional regulator SinR [Bacillus pumilus SAFR-032] gi|157681718|gb|ABV62862.1| transcriptional regulator SinR [Bacillus pumilus SAFR-032] Length = 111 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 4/101 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK R + E+A A +S ++ E + SI++ + ++S + Sbjct: 2 IGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 Query: 91 YDGEV---IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + D + + K D G K R+ Sbjct: 62 LHEKDETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQ 102 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K R +KG S E + G+ S LS+ E+ +T P I+ K+ V + Sbjct: 1 MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 172 IYFGDEVIV 180 + + Sbjct: 61 LLHEKDETE 69 >gi|254303749|ref|ZP_04971107.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323941|gb|EDK89191.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 182 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V IK IR+ N + ++A ++ +S + E G + ++ + N ++SF+ + Sbjct: 8 VSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTLI 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + + + + Sbjct: 68 AQPKLPYKVTKLAEIEPI 85 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K IR++K +S + KL + S L+ E+G P + KI + + + Sbjct: 10 ENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTLI 67 >gi|153815811|ref|ZP_01968479.1| hypothetical protein RUMTOR_02056 [Ruminococcus torques ATCC 27756] gi|145846836|gb|EDK23754.1| hypothetical protein RUMTOR_02056 [Ruminococcus torques ATCC 27756] Length = 146 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 40/82 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + + + G+S + K G+ STLS++++GR+ P+ + +K+ +D++ Sbjct: 9 MYEIFEQLLQKYGVSAYKVAKATGVTQSTLSDWKRGRSTPKSENMKKLADYFGVSIDYLM 68 Query: 174 FGDEVIVPKSIKRAKGNQSSKK 195 G E + + K + K+ Sbjct: 69 TGKEETEKEPKLKPKDEKDIKE 90 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 35/90 (38%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 + + + ++A +S ++ ++ G + L + + +S D++ G+ Sbjct: 15 QLLQKYGVSAYKVAKATGVTQSTLSDWKRGRSTPKSENMKKLADYFGVSIDYLMTGKEET 74 Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 + + K D I A + + K G+ Sbjct: 75 EKEPKLKPKDEKDIKEILANTEQLLKQDGL 104 >gi|42518546|ref|NP_964476.1| hypothetical protein LJ0451 [Lactobacillus johnsonii NCC 533] gi|41582831|gb|AAS08442.1| hypothetical protein LJ_0451 [Lactobacillus johnsonii NCC 533] Length = 272 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 5/137 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G +K+ R+ TQ++M G + + E G+ S SI + ++ I Sbjct: 2 KIGQALKEERQKLGLTQEQMIKGI-ISKGHYSKIERGLESISIDTLFRIILKHHIDISDF 60 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 ++ D + + L + A + R+ G+ ++L + L Y Sbjct: 61 FNKVKYDYYTSEDKKAEELKQKMLHAFNNNQREKVGIYLN---EILDLKEHQLFKYRTII 117 Query: 151 TIPEIKP-ARKIKQVTK 166 I ++ + K Sbjct: 118 AIASLENSLSDLSLAFK 134 Score = 38.0 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG LK R+ G++Q + K + + S E+G I +I + Sbjct: 1 MKIGQALKEERQKLGLTQEQMIKGI-ISKGHYSKIERGLESISIDTLFRIILKHHIDISD 59 Query: 172 IY 173 + Sbjct: 60 FF 61 >gi|332967946|gb|EGK07034.1| transcriptional regulator [Kingella kingae ATCC 23330] Length = 68 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +++ R+ +Q+E+A +NL EN + ++ + L + + + ++ Sbjct: 4 NQVRQYRQIKGWSQQELAQRVEVARQTINLIENNRYNPTLLLCIKLAHALDTDLNSLF 61 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++ R+ KG SQ E + + + T++ E R P + K+ L+ + Sbjct: 1 MNANQVRQYRQIKGWSQQELAQRVEVARQTINLIENNRYNPTLLLCIKLAHALDTDLNSL 60 Query: 173 YF-GDE 177 ++ G+E Sbjct: 61 FWQGNE 66 >gi|302380564|ref|ZP_07269029.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|303234052|ref|ZP_07320701.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302311507|gb|EFK93523.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302494977|gb|EFL54734.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 179 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 39/91 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +I+ +R TQ+E+A ++ + ++ E + S S+ Y+ N Sbjct: 2 EIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDMATF 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + ++ + + + + ++ + + + Sbjct: 62 FADDLSVKEIFTKEDYQSSEDVSMKSSITWL 92 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++S+R G++Q E + + +S E+ T P + + + Sbjct: 1 MEIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDMAT 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + D++ V + + S S K Sbjct: 61 FFA-DDLSVKEIFTKEDYQSSEDVSMKS 87 >gi|149924529|ref|ZP_01912888.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149814622|gb|EDM74203.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 135 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++++R A TQ+ +A AN + E+G S ++ L L + Y + + Sbjct: 23 FGKHLRNLRNARGLTQEVLAERANLSSDTIRRLEHGTFSPTLNTLLRLASGYGLRLSTLL 82 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 LDP G L+++R +G++Q + + + T+ E G P + ++ Sbjct: 18 LDPRGFGKHLRNLRNARGLTQEVLAERANLSSDTIRRLEHGTFSPTLNTLLRLASGYGLR 77 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 L + E+ + ++R + +S+KD + Sbjct: 78 LSTLLASYEIGM-LPLERELADLLIGRSEKDLR 109 >gi|330977318|gb|EGH77271.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 182 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 22/46 (47%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 G R++ IRK +Q+E+A A S +++ E S SI Sbjct: 4 GERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK 49 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT-KKHLD 170 G RL+SIRK KG+SQ E K G+ NST+S E+ P I RK V + Sbjct: 1 MDGGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRK---VLGGIPMS 57 Query: 171 WIYFGDEVIVPKS 183 + F E VP++ Sbjct: 58 MVEFFSEESVPEN 70 >gi|322382659|ref|ZP_08056524.1| hypothetical protein PL1_2572 [Paenibacillus larvae subsp. larvae B-3650] gi|322384064|ref|ZP_08057785.1| hypothetical protein PL1_2193 [Paenibacillus larvae subsp. larvae B-3650] gi|321151237|gb|EFX44533.1| hypothetical protein PL1_2193 [Paenibacillus larvae subsp. larvae B-3650] gi|321153374|gb|EFX45796.1| hypothetical protein PL1_2572 [Paenibacillus larvae subsp. larvae B-3650] Length = 367 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 14/144 (9%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ K + R+ + R+A T ++A A++ +E + + L + + Sbjct: 18 RFSKFIPDRLIEAREARGFTLTDLANIVEISHQAISKYEKEKATPNHDTLEKLSDALHVP 77 Query: 87 FDWIYDGEVIDRRYEDVTNKKRL-------DPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 + Y + + +K I K + Q L +P Sbjct: 78 VTYFYKSYPKKVDGVIYFRSMAMATRKSKNIHLHKISWIKEI--HKYLEQYFNFPKLNVP 135 Query: 140 NSTLSNYEQGRTIPE-IKPARKIK 162 + P + +I Sbjct: 136 QF----ITRQEYYPTPFEEIDQIA 155 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I RL R+ +G + + ++ + + +S YE+ + P K+ + + Sbjct: 22 FIPDRLIEAREARGFTLTDLANIVEISHQAISKYEKEKATPNHDTLEKLSDALHVPVTYF 81 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSK 197 Y V I +++KSK Sbjct: 82 YKSYPKKVDGVIYFRSMAMATRKSK 106 >gi|309704472|emb|CBJ03821.1| putative phage repressor protein [Escherichia coli ETEC H10407] Length = 216 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ RK+ ++Q L G+ T++ +E+ P + + K W Sbjct: 1 MNMSDRIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQPNGANLQALANALKCDPLW 60 Query: 172 IYFGDEVIVPK 182 + G PK Sbjct: 61 LVSGKGSPEPK 71 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 27/78 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RI+ RK N TQ+ +A V +E + L N + W+ Sbjct: 2 NMSDRIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQPNGANLQALANALKCDPLWL 61 Query: 91 YDGEVIDRRYEDVTNKKR 108 G+ ++ + Sbjct: 62 VSGKGSPEPKINLKPEIF 79 >gi|310659749|ref|YP_003937470.1| hypothetical protein CLOST_2450 [Clostridium sticklandii DSM 519] gi|308826527|emb|CBH22565.1| conserved protein of unknown function [Clostridium sticklandii] Length = 199 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG I +R TQK++A N V+ +E GM + L Sbjct: 4 KKVGQLILKLRNEKGLTQKQVADSLNISNKTVSKWECGMGCPDVTLWTELSEVLGADILK 63 Query: 90 IYDGEVIDRRYE 101 + +GE+ + + Sbjct: 64 LLEGELKPNKPD 75 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G + +R +KG++Q + L + N T+S +E G P++ ++ +V Sbjct: 1 MDCKKVGQLILKLRNEKGLTQKQVADSLNISNKTVSKWECGMGCPDVTLWTELSEVLGAD 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 ILKLLEGE 68 >gi|320107567|ref|YP_004183157.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926088|gb|ADV83163.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 107 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 25/76 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R+ +Q + A A++ E S + Y +S W+ Sbjct: 10 LGQRLRQAREDAGLSQAQAAKLLGLHRPAISEIETEGRKVSAGELKNFASLYHVSTAWLL 69 Query: 92 DGEVIDRRYEDVTNKK 107 V + + Sbjct: 70 GEPVQSNEQLKMAARN 85 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 + D +G RL+ R+D G+SQ + KLLG+ +S E + + Sbjct: 2 PENTDLPGLGQRLRQAREDAGLSQAQAAKLLGLHRPAISEIETEGRKVSAGELKNFASLY 61 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 W+ G+ V + +K A N S K+K Sbjct: 62 HVSTAWLL-GEPVQSNEQLKMAARNLESLKAKD 93 >gi|257868389|ref|ZP_05648042.1| predicted protein [Enterococcus casseliflavus EC30] gi|257802503|gb|EEV31375.1| predicted protein [Enterococcus casseliflavus EC30] Length = 211 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 40/78 (51%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++K+ R AN+ TQ+E+A + + +++ +E G S + + + IS + + Sbjct: 9 LSIKLKEYRIANSLTQQELAEILDVSDKSISKWELGDTYPSKKNVIKISELLGISIEILL 68 Query: 92 DGEVIDRRYEDVTNKKRL 109 E+++ R ++ + + Sbjct: 69 IEEIVEDRQKENKLIRYI 86 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ + +LK R ++Q E ++L + + ++S +E G T P K KI ++ Sbjct: 1 MSKMSESILSIKLKEYRIANSLTQQELAEILDVSDKSISKWELGDTYPSKKNVIKISELL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAK 188 ++ + E IV K K Sbjct: 61 GISIEILLI--EEIVEDRQKENK 81 >gi|253570557|ref|ZP_04847965.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251839506|gb|EES67589.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 73 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++ +IK R N +Q+E+AI +N E G S AL + + + + Sbjct: 3 NKELLNKIKVYRAMKNISQEELAIAIGVTRKTINTVETGKFIPSTVLALRIARYFGVPVE 62 Query: 89 WIY 91 I+ Sbjct: 63 EIF 65 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + ++K R K +SQ E +G+ T++ E G+ IP A +I + Sbjct: 1 MENKELLNKIKVYRAMKNISQEELAIAIGVTRKTINTVETGKFIPSTVLALRIARYFGVP 60 Query: 169 LDWIY 173 ++ I+ Sbjct: 61 VEEIF 65 >gi|187919377|ref|YP_001888408.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717815|gb|ACD19038.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 183 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V TR++ IRK N +Q+E+A A ++L E S S+ L +S Sbjct: 4 EVATRLQYIRKKNGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVI 96 + EV Sbjct: 64 FTFEVE 69 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ IRK G+SQ E K G+ N T+S EQ R P + +K+ + L + + Sbjct: 9 LQYIRKKNGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFFTFEV 68 Query: 178 VIVPKSIKR 186 + + R Sbjct: 69 EVERSVVSR 77 >gi|169333754|ref|ZP_02860947.1| hypothetical protein ANASTE_00138 [Anaerofustis stercorihominis DSM 17244] gi|169259603|gb|EDS73569.1| hypothetical protein ANASTE_00138 [Anaerofustis stercorihominis DSM 17244] Length = 118 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ +G R+K+ RK TQ+++A N S ++ ENG TS++ + L N IS Sbjct: 5 YRKLGKRLKEQRKKQGLTQEKLAEYVNLSVSHLSHIENGNEKTSLQTIVNLANILNIS 62 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++D +G RLK RK +G++Q + + + + S LS+ E G ++ + + Sbjct: 1 MKIDYRKLGKRLKEQRKKQGLTQEKLAEYVNLSVSHLSHIENGNEKTSLQTIVNLANILN 60 Query: 167 KH 168 Sbjct: 61 IS 62 >gi|163753960|ref|ZP_02161083.1| hypothetical protein KAOT1_20097 [Kordia algicida OT-1] gi|161326174|gb|EDP97500.1| hypothetical protein KAOT1_20097 [Kordia algicida OT-1] Length = 93 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 7/98 (7%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGAN--QLESA 60 +N F+ LK + I ++ ++G +IK+IR++ N TQ ++A + S Sbjct: 1 MNIFIYGILKDSE-----INKLRKKTRHNLGVKIKEIRESKNLTQVDLASRIDGRFDTSN 55 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDR 98 V+ E+G +T++ + +++ + D EV + Sbjct: 56 VSRIESGRINTTVFTLFRIAKALDVNIADLLDIEVFEN 93 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K IR+ K ++Q++ + S +S E GR + +I + ++ + Sbjct: 29 IKEIRESKNLTQVDLASRIDGRFDTSNVSRIESGRINTTVFTLFRIAKALDVNIADLL 86 >gi|162457008|ref|YP_001619375.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161167590|emb|CAN98895.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 476 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G +++ +R+ + TQ ++A S +NL EN + + L +++ Sbjct: 7 LGAKVRALRRREHMTQVDLAERLGVSASYLNLIENNRRPLTAPLLIRLAQIFQLDL 62 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 35/69 (50%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +GA+++++R+ + M+Q++ + LG+ S L+ E R ++ Q+ + L Sbjct: 3 DTPLLGAKVRALRRREHMTQVDLAERLGVSASYLNLIENNRRPLTAPLLIRLAQIFQLDL 62 Query: 170 DWIYFGDEV 178 ++V Sbjct: 63 QNFASEEDV 71 >gi|42781543|ref|NP_978790.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42737466|gb|AAS41398.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 185 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 35/85 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + +++A ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + ++ + L Sbjct: 61 VSFTSLINNPQPDTKVVLRSDVQAL 85 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRS 80 >gi|15644083|ref|NP_229132.1| LacI family transcriptional regulator [Thermotoga maritima MSB8] gi|4981889|gb|AAD36402.1|AE001787_7 lacI family transcriptional regulator, putative [Thermotoga maritima MSB8] Length = 111 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G ++ RK +N TQK++A +S V+ E G + SIR + Sbjct: 14 EVMSQIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 71 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +L + RK ++Q + K LG+ S +S E G I+ KI Sbjct: 22 QLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 71 >gi|86136992|ref|ZP_01055570.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85826316|gb|EAQ46513.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 204 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 11 LKSLQEYTLIITPEIRQYW--KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 ++ +Q + PE + + +G I+D RK T +E A A S ++ EN Sbjct: 1 MEPIQSEETGLAPEASEAPDGEVLGKMIRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQ 60 Query: 69 CSTSIRYALYLRNEYEISFDWIY 91 S L E+ ++ Sbjct: 61 TRPSFEIIRRLMQTLELETPQLF 83 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + + D +G ++ RK+KG++ E K + STLS E +T P Sbjct: 5 QSEETGLAPEASEAPDGEVLGKMIRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTRPS 64 Query: 155 IKPARKIKQVTKKHLDWIY 173 + R++ Q + ++ Sbjct: 65 FEIIRRLMQTLELETPQLF 83 >gi|325695610|gb|EGD37510.1| transcriptional regulator [Streptococcus sanguinis SK150] Length = 228 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 27/76 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQK++A A + +E G+ S L + + + Sbjct: 5 EKLKARRKELKLTQKDIADKLRISYQAYSAWERGVKEPSTEKVRLLEKLLNVPKGYFTEI 64 Query: 94 EVIDRRYEDVTNKKRL 109 E++ N K Sbjct: 65 EIVRLYNTLSPNGKEQ 80 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ RK+ ++Q + L + S +E+G P + R ++++ + Sbjct: 1 MYQPEKLKARRKELKLTQKDIADKLRISYQAYSAWERGVKEPSTEKVRLLEKLLNVPKGY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|304397757|ref|ZP_07379634.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304354929|gb|EFM19299.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 185 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 29/74 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + + ++ +R+AN + A ++ + E G S ++ + + Sbjct: 1 MADFQQHLSGALRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFN 60 Query: 85 ISFDWIYDGEVIDR 98 + F + DG + Sbjct: 61 VPFSFFIDGSALPP 74 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ G S + G+ + L E+G + P + KI + G Sbjct: 12 LRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFFIDG 69 >gi|296395188|ref|YP_003660072.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296182335|gb|ADG99241.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 204 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 12/143 (8%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGAN-----QLESAVNLFENGMCSTSIRYALYLRNE 82 + + +G+RIK++R+A Q +A N + V ENG S + A+ + + Sbjct: 17 FDRMIGSRIKELREARGLPQSALADAVNTRGERFTQQIVGKIENGQRSLKYQEAILIAHI 76 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM--SQIEFGKLLGMPN 140 + G LD + R D+ + ++ + Sbjct: 77 LRVPV-----GVFWMTGESATDEYAELDVKFDNLNRVASRADRALWELLEAIAEVEVVEK 131 Query: 141 STLSNYEQGRTIPEIKPARKIKQ 163 S T P + A I Q Sbjct: 132 SYWKVAGGSDTDPNRQDAYSIAQ 154 Score = 43.4 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 9/113 (7%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG-----MPNSTLSNYEQG 149 D IG+R+K +R+ +G+ Q + + E G Sbjct: 2 PEDEETGSEPLVGMTFDRMIGSRIKELREARGLPQSALADAVNTRGERFTQQIVGKIENG 61 Query: 150 RTIPEIKPARKIKQVTKKHLDWI-YFGD---EVIVPKSIKRAKGNQSSKKSKK 198 + + + A I + + + G+ + +K N+ + ++ + Sbjct: 62 QRSLKYQEAILIAHILRVPVGVFWMTGESATDEYAELDVKFDNLNRVASRADR 114 >gi|289433695|ref|YP_003463567.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169939|emb|CBH26479.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R+ Q ++A ++ E G + S+ +L + +E++ + I+ Sbjct: 5 NRVKALREEKGIAQNDLASILEVSRQTIHAIEKGKYNPSLELSLKIAKYFELTVEEIFQL 64 Query: 94 EVI 96 E Sbjct: 65 EEE 67 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 38/67 (56%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K++R++KG++Q + +L + T+ E+G+ P ++ + KI + + ++ Sbjct: 1 MKVINRVKALREEKGIAQNDLASILEVSRQTIHAIEKGKYNPSLELSLKIAKYFELTVEE 60 Query: 172 IYFGDEV 178 I+ +E Sbjct: 61 IFQLEEE 67 >gi|218670209|ref|ZP_03519880.1| probable transcriptional regulator protein [Rhizobium etli GR56] Length = 152 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R+ +Q+ +A V +E G+ + S + + Sbjct: 13 VGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIAEVLHTSPSFFF 72 Query: 92 -DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 G+ + DP A R K Sbjct: 73 EQGDSQPLAVRGLDGPDHADPVAEFLRTKE 102 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +V +D Y AR+++ R+ GMSQ + +G+ + YE+G ++ Sbjct: 1 MNVKTPNAIDSYVG-ARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQR 59 Query: 161 IKQVTKKHLDWIY 173 I +V + + Sbjct: 60 IAEVLHTSPSFFF 72 >gi|218507568|ref|ZP_03505446.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 167 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+R++ +R A+ +Q+E+A S ++L E+ + S+ + + I Sbjct: 4 DIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEF 63 Query: 91 YDGEVIDRRY 100 + E + Sbjct: 64 FAFEPERPKK 73 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RL+ +R +SQ E K G+PNST+S E + P + ++I L + Sbjct: 7 SRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFFAF 66 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 + K+ A+ K K Sbjct: 67 EPERPKKAFYAAEELVEIGKGAISYK 92 >gi|254489092|ref|ZP_05102296.1| transcriptional regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214042100|gb|EEB82739.1| transcriptional regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 204 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 8/65 (12%), Positives = 24/65 (36%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P +G + +R+ + +E++ + ++ E + + S+R +R Sbjct: 7 PTPEDTPGAIGETFRQMRQNQGISLRELSEKSGVSVGTISQIERDLANPSMRVLTAIRRA 66 Query: 83 YEISF 87 + Sbjct: 67 LNVPM 71 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AIG + +R+++G+S E + G+ T+S E+ P ++ I++ + + Sbjct: 15 AIGETFRQMRQNQGISLRELSEKSGVSVGTISQIERDLANPSMRVLTAIRRALNVPM-QV 73 Query: 173 YFGDEV 178 FGD+ Sbjct: 74 MFGDDS 79 >gi|209544249|ref|YP_002276478.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531926|gb|ACI51863.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 174 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 25/77 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R +Q+ + V +E G S L ++ + + Sbjct: 38 VGGRIRLRRTLMGLSQERLGDALGLTFQQVQKYERGTNRVSASRLYELSEVLDVPVSFFF 97 Query: 92 DGEVIDRRYEDVTNKKR 108 DG + TN Sbjct: 98 DGLDSGQAGSKATNAIP 114 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + G + V+ +D + G ++ R G+SQ G LG+ + YE+G Sbjct: 16 FKGRKDGLTDKPVSGPSPVDVHVGGR-IRLRRTLMGLSQERLGDALGLTFQQVQKYERGT 74 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +V + + + G Sbjct: 75 NRVSASRLYELSEVLDVPVSFFFDG 99 >gi|220922145|ref|YP_002497446.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946751|gb|ACL57143.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 134 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 1/101 (0%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + + + VG RI +RKA +Q + V +E G + Sbjct: 1 MPKQTTEVDRLVGIRITALRKAKGLSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 E+ ++ E D D L L++ Sbjct: 61 RLLEVPVSAFFE-EPNDAAGRDDNVFGFLSTQGAVDILRAY 100 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++RK KG+SQ G +G+ + YE+G+ R+I ++ + + + Sbjct: 16 ITALRKAKGLSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIARLLEVPVSAFF 71 >gi|162147196|ref|YP_001601657.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785773|emb|CAP55344.1| putative transcriptional Regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 174 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 25/77 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R +Q+ + V +E G S L ++ + + Sbjct: 38 VGGRIRLRRTLMGLSQERLGDALGLTFQQVQKYERGTNRVSASRLYELSEVLDVPVSFFF 97 Query: 92 DGEVIDRRYEDVTNKKR 108 DG + TN Sbjct: 98 DGLDSGQAGSKATNAIP 114 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + G + V+ +D + G ++ R G+SQ G LG+ + YE+G Sbjct: 16 FKGRKDGLTDKPVSGPSPVDVHVGGR-IRLRRTLMGLSQERLGDALGLTFQQVQKYERGT 74 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +V + + + G Sbjct: 75 NRVSASRLYELSEVLDVPVSFFFDG 99 >gi|91710591|gb|ABE50519.1| N-acetylglutamate synthase / N-acetylglutamate kinase [Methylobacillus flagellatus KT] Length = 521 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 2/91 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ RKA N T +E+A N ++ E G S L + + ++Y Sbjct: 3 LGNAIRKRRKALNMTLQELARKVNANSGNLSRIERGAQGVSETMLRKLCTALDCTAAYLY 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + + N RL + ++ R Sbjct: 63 AQSDAESGHST--NTSRLTLHQPQEFVRWFR 91 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+G ++ RK M+ E + + + LS E+G RK+ + Sbjct: 1 MALGNAIRKRRKALNMTLQELARKVNANSGNLSRIERGAQGVSETMLRKLCTALDCTAAY 60 Query: 172 IY 173 +Y Sbjct: 61 LY 62 >gi|56698227|ref|YP_168599.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56679964|gb|AAV96630.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 189 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 24/70 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RKA T E+A + ++ E M SI + + ++ Sbjct: 11 LGADLRALRKARGLTLSEIAARLGRSVGWLSQVERDMSEPSISDLRQIAGCLGVPMSMLF 70 Query: 92 DGEVIDRRYE 101 + Sbjct: 71 AHAAAPAEEQ 80 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A L+++RK +G++ E LG LS E+ + P I R+I + ++ Sbjct: 13 ADLRALRKARGLTLSEIAARLGRSVGWLSQVERDMSEPSISDLRQIAGCLGVPMSMLF 70 >gi|22855027|ref|NP_690787.1| immunity repressor [Bacillus phage phi105] gi|133375|sp|P06153|RPC_BPPH1 RecName: Full=Immunity repressor protein gi|1196714|gb|AAA88396.1| unknown protein [Bacillus phage phi105] gi|4126640|dbj|BAA36660.1| immunity repressor [Bacteriophage phi-105] gi|295002743|gb|ADF59164.1| immunity repressor [Bacillus phage phi105] gi|224753|prf||1112178A ORF 1 Length = 144 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK IRK TQ ++A AN S + E + S+ + I I Sbjct: 3 VGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSAIV 62 Query: 92 DGEVIDRRYEDVTNKKRL-DPYAIGARLKS 120 E + + + N K D ++ Sbjct: 63 GEETLIKEEQAEYNSKEEKDIAKRMEEIRK 92 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R+K+IRK++ ++Q++ + + S L++ E+ R P + + + Sbjct: 1 MTVGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSA 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 I G+E ++ + + +K+ Sbjct: 61 IV-GEETLIKEEQAEYNSKEEKDIAKR 86 >gi|88705426|ref|ZP_01103137.1| DNA-binding protein [Congregibacter litoralis KT71] gi|88700516|gb|EAQ97624.1| DNA-binding protein [Congregibacter litoralis KT71] Length = 198 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 15/115 (13%) Query: 37 KDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF--------- 87 K R+ N +Q +A A+ + ++ E G S L L + E+ Sbjct: 13 KQWRQRRNLSQLHLAETADISQRHLSWLETGRSQPSRDMVLKLADAMEVPLRERNTLLHA 72 Query: 88 -----DWIYDG-EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 ++ G E LD + + R+ + E ++ Sbjct: 73 AGFAPHYLESGLEEPHMAPVSEALNAVLDHHMPFPAVVVNRRWDRIMANEAADMM 127 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 K R+ + +SQ+ + + LS E GR+ P K+ + L Sbjct: 13 KQWRQRRNLSQLHLAETADISQRHLSWLETGRSQPSRDMVLKLADAMEVPL 63 >gi|85707180|ref|ZP_01038267.1| transcriptional regulator, putative [Roseovarius sp. 217] gi|85668339|gb|EAQ23213.1| transcriptional regulator, putative [Roseovarius sp. 217] Length = 436 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI++ R N Q ++A A S +NL E+ + L L ++ + Sbjct: 7 IGTRIRERRVLNGIRQSDLAQQAGISPSYLNLIEHNHRRIGGKTLLKLAEALKVEPSQLT 66 Query: 92 DG 93 G Sbjct: 67 QG 68 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 36/91 (39%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG R++ R G+ Q + + G+ S L+ E K K+ + K Sbjct: 3 DRLMIGTRIRERRVLNGIRQSDLAQQAGISPSYLNLIEHNHRRIGGKTLLKLAEALKVEP 62 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + G EV + ++ A G + + D+ Sbjct: 63 SQLTQGAEVTLISGLREAAGKPDTDGPELDR 93 >gi|329963706|ref|ZP_08301152.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328527716|gb|EGF54708.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+ R K ++Q + + +G+ T++ E G+ +P A KI +V K ++ I+ Sbjct: 1 MTNTLRVERAIKHITQQQLAEAIGVSRQTINAIESGKYVPSTLLALKISEVFGKTVNEIF 60 Query: 174 FGDE 177 +E Sbjct: 61 ILEE 64 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R + TQ+++A +N E+G S AL + + + + I+ E Sbjct: 5 LRVERAIKHITQQQLAEAIGVSRQTINAIESGKYVPSTLLALKISEVFGKTVNEIFILEE 64 Query: 96 IDR 98 D+ Sbjct: 65 NDK 67 >gi|296115933|ref|ZP_06834556.1| transcriptional regulator Xre [Gluconacetobacter hansenii ATCC 23769] gi|295977505|gb|EFG84260.1| transcriptional regulator Xre [Gluconacetobacter hansenii ATCC 23769] Length = 482 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 4/117 (3%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G+RI+ R TQ +A S +N E+ I L + + D+ Sbjct: 11 GSRIRHQRHRVGMTQSALAQRLGISASYLNQIEHDTRPLPITLLGALCTLFSVGADYF-- 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLK--SIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + R + DP ++ SI ++ + + + + L E Sbjct: 69 SDTEETRGMQAVREILADPVFDMDAIRLDSIHAAMRVAPDLCAQFVRLYRAYLLRQE 125 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G+R++ R GM+Q + LG+ S L+ E I + + D+ Sbjct: 9 FTGSRIRHQRHRVGMTQSALAQRLGISASYLNQIEHDTRPLPITLLGALCTLFSVGADYF 68 Query: 173 YFGDEVIVPKSIKR 186 +E ++++ Sbjct: 69 SDTEETRGMQAVRE 82 >gi|289168100|ref|YP_003446369.1| transcriptional regulator [Streptococcus mitis B6] gi|288907667|emb|CBJ22504.1| transcriptional regulator [Streptococcus mitis B6] Length = 288 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 1/97 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + TR+K+ RK +Q+E+A G + ++ ENG + + L + ++S D+ + Sbjct: 5 LATRLKNRRKELKMSQRELAEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFF 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 + ++++ E KK + +S++ + Sbjct: 64 NEQIVEEIDELSEFKKLAQTFITNRNYESLKYIYELE 100 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG-- 175 LK+ RK+ MSQ E + + +S E G P + + K +D+ + Sbjct: 9 LKNRRKELKMSQRELAEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFFNEQI 67 Query: 176 -DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E+ K+ + ++ + K Sbjct: 68 VEEIDELSEFKKLAQTFITNRNYESLK 94 >gi|239930643|ref|ZP_04687596.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291439007|ref|ZP_06578397.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291341902|gb|EFE68858.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 285 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 11 RRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 67 Score = 43.8 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 16 QELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV-------E 68 Query: 176 DEVIVPKSIKRAKGNQ 191 D+ IV ++ AK ++ Sbjct: 69 DQRIVDSLMQMAKDSR 84 >gi|237748255|ref|ZP_04578735.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229379617|gb|EEO29708.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 138 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K+ RK +Q E+ + +E G S ++ + L + + D+I Sbjct: 4 IGERLKEERKRLGLSQMELCELTGITRKTLFSYETGERSPNVLFLSALFDH-DFDVDYIL 62 Query: 92 DGEVIDRRYEDVTNKKR 108 GE+ R + + Sbjct: 63 KGELDRLRPSLLKKIQD 79 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++IG RLK RK G+SQ+E +L G+ TL +YE G P + + +D Sbjct: 1 MHSIGERLKEERKRLGLSQMELCELTGITRKTLFSYETGERSPNVLFLSALFD-HDFDVD 59 Query: 171 WIYFGD-EVIVPKSIKRAKGNQSS 193 +I G+ + + P +K+ + S Sbjct: 60 YILKGELDRLRPSLLKKIQDAAES 83 >gi|229065719|ref|ZP_04200943.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228715537|gb|EEL67338.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 186 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +VG +I RK T K +A A+ S ++ E G+ + S++ + I Sbjct: 7 NVGQKIMVFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPL 63 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ +G ++ RK G++ +L + S LS E+G T P ++ + I Sbjct: 1 MYMNNINVGQKIMVFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALN 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 IPL-FNFFLEDTNTEELVVRANQRKK 85 >gi|229069332|ref|ZP_04202622.1| Transcriptional regulator, Xre [Bacillus cereus F65185] gi|229078964|ref|ZP_04211516.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228704378|gb|EEL56812.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228713819|gb|EEL65704.1| Transcriptional regulator, Xre [Bacillus cereus F65185] Length = 404 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+ G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKTLRKEKKLTQTELV-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + + + K++ Sbjct: 63 EEDEGEIVELIQKMEPLIKANKCDEVYKTL 92 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 5/92 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++K++RK+K ++Q +L+G + S LS E G+ P +K + I + + + ++ Sbjct: 6 EKIKTLRKEKKLTQT---ELVGSELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 DE + + I++ + + K + K+ P Sbjct: 63 EEDEGEIVELIQKMEPLIKANKCDEVYKTLLP 94 >gi|229079609|ref|ZP_04212144.1| hypothetical protein bcere0023_22630 [Bacillus cereus Rock4-2] gi|228703701|gb|EEL56152.1| hypothetical protein bcere0023_22630 [Bacillus cereus Rock4-2] Length = 190 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 6 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 65 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 66 VSFTSLINNPQPDTKVILRKDIQAL 90 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 15 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 74 Query: 176 DEVIVPKSIKR 186 + +++ Sbjct: 75 PQPDTKVILRK 85 >gi|222152322|ref|YP_002561497.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113133|emb|CAR40543.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+++RK + +Q E+A + E G + S+ A L + +S + I+ Sbjct: 3 NRIQELRKEHKISQAELAEAMEVTRQTIISLEKGRYNASLELAFKLATYFNLSIEDIFIY 62 Query: 94 EVIDR 98 + Sbjct: 63 KESGY 67 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK+ +SQ E + + + T+ + E+GR ++ A K+ ++ I+ Sbjct: 3 NRIQELRKEHKISQAELAEAMEVTRQTIISLEKGRYNASLELAFKLATYFNLSIEDIFIY 62 Query: 176 DEV 178 E Sbjct: 63 KES 65 >gi|196048279|ref|ZP_03115456.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196021016|gb|EDX59746.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 184 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-DW 89 ++G +I RK T K +A ++ S ++ E G+ + S++ + I ++ Sbjct: 5 NIGEKIMVFRKGAGLTSKRLAELSDITPSMLSQIEKGITNPSLQTLKLISLALNIPLFNF 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + +K++ G + +EF L+ + T S+ E Sbjct: 65 FLEDTNTEELVVRANQRKKITFPESGNVSYELLSPNLDGSLEFA-LMNLLPQTASSME 121 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG ++ RK G++ +L + S LS E+G T P ++ + I Sbjct: 1 MNNINIGEKIMVFRKGAGLTSKRLAELSDITPSMLSQIEKGITNPSLQTLKLISLALNIP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ + + RA + Sbjct: 61 L-FNFFLEDTNTEELVVRANQRKK 83 >gi|163869148|ref|YP_001610388.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018835|emb|CAK02393.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 34/101 (33%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +I+ R+ +Q + + +E G+ S + + + + + Sbjct: 12 VGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPIS-FF 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++I ++ + + + LK R + Q Sbjct: 71 YADIITKQQPPHHHDEVISSTEEYLLLKRFRTLTSIKQRAI 111 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ R+ MSQ G LG+ + YE+G +I + + + Y Sbjct: 14 KKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPISFFY 71 >gi|228960181|ref|ZP_04121838.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799449|gb|EEM46409.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 114 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 1/105 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K R + + TQ E S V E + + +S D + Sbjct: 4 FGENLKKFRASRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALM 63 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + G +S R+ + + K L Sbjct: 64 GRTSTPHEKNIANALDEIQTVFAGLD-ESQREQYCKQLVLYAKFL 107 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK R + ++Q EFG+ + + S + N E P++ +I +D Sbjct: 1 MNTFGENLKKFRASRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVD 60 Query: 171 WIYFGDEVIVPKSIKRA 187 + K+I A Sbjct: 61 ALMGRTSTPHEKNIANA 77 >gi|225377835|ref|ZP_03755056.1| hypothetical protein ROSEINA2194_03494 [Roseburia inulinivorans DSM 16841] gi|225210273|gb|EEG92627.1| hypothetical protein ROSEINA2194_03494 [Roseburia inulinivorans DSM 16841] Length = 296 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++A + +SA+ +E + S + L YE++ D++ Sbjct: 35 IQERLKDLRVERGLTLEQLAEETHLSKSALGSYEGDNLKDISHHALIQLAKVYEVTVDYL 94 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 L + LKS R D + Sbjct: 95 LGRSKTKNHPNADLADLHLSD-DMIELLKSGRVDNSLLCE 133 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + S L +YE ++ +V + +D Sbjct: 33 LSIQERLKDLRVERGLTLEQLAEETHLSKSALGSYEGDNLKDISHHALIQLAKVYEVTVD 92 Query: 171 WIY 173 ++ Sbjct: 93 YLL 95 >gi|170756638|ref|YP_001780356.1| hypothetical protein CLD_0038 [Clostridium botulinum B1 str. Okra] gi|169121850|gb|ACA45686.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 182 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 32/78 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R N + +++ + + ++ E G + +I + N ++++ + Sbjct: 7 ISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKLI 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 D + D + K+ Sbjct: 67 DSPMEDVVVIHKVDTKKQ 84 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 A LK +R D+ +S + +L G+ LS E+G + P I KI + + Sbjct: 9 ANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKLIDS 68 Query: 174 -FGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D V++ K + + ++ ++NP Sbjct: 69 PMEDVVVIHKVDTKKQSENTNSFISYCYYTTNP 101 >gi|329769730|ref|ZP_08261131.1| hypothetical protein HMPREF0433_00895 [Gemella sanguinis M325] gi|328838092|gb|EGF87710.1| hypothetical protein HMPREF0433_00895 [Gemella sanguinis M325] Length = 218 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ +RK +N +Q +A SA N +E G + + L + + + + Sbjct: 5 DRLQALRKKHNISQTAIAEHLGVTRSAYNGWEKGKFIPNKKNLEELADYFNVETSYFESE 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 I RY + + + + L Sbjct: 65 YEIVNRYLQLNDINKQKLLKVANEL 89 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL+++RK +SQ + LG+ S + +E+G+ IP K ++ + Sbjct: 1 MFSKDRLQALRKKHNISQTAIAEHLGVTRSAYNGWEKGKFIPNKKNLEELADYFNVETSY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|312888716|ref|ZP_07748283.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311298819|gb|EFQ75921.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 191 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RIK+ R+ N T +E+A A+ + ++ EN S+ + + + Sbjct: 2 EQDVLIQISHRIKERRREKNLTIQELADKASVSKGLISQIENSRTIPSLMVLIEIIKGLD 61 Query: 85 ISFDWIYDG 93 + + + Sbjct: 62 VDLNKFFKD 70 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+K R++K ++ E + +S E RTIP + +I + L+ Sbjct: 7 IQISHRIKERRREKNLTIQELADKASVSKGLISQIENSRTIPSLMVLIEIIKGLDVDLNK 66 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + ++ P A + + +K+S+ Sbjct: 67 FF--KDISFPSGQALAVIKRKEEYEPFEKESA 96 >gi|303242387|ref|ZP_07328871.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590065|gb|EFL59829.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 147 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 23/79 (29%) Query: 39 IRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDR 98 +R N +Q+++A + A +E G + L Y + D + + Sbjct: 9 LRTMNGLSQEQIAEKIDISRQAYGKWEKGETIPDVEKCALLAEFYGTTVDSLLHFDTNQD 68 Query: 99 RYEDVTNKKRLDPYAIGAR 117 K + Sbjct: 69 GIVVPPAPKGKHIFGTVTM 87 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + L +R G+SQ + + + + +E+G TIP+++ + + +D + Sbjct: 1 MLKDNLIMLRTMNGLSQEQIAEKIDISRQAYGKWEKGETIPDVEKCALLAEFYGTTVDSL 60 Query: 173 YFGD 176 D Sbjct: 61 LHFD 64 >gi|294617990|ref|ZP_06697595.1| helix-turn-helix domain protein [Enterococcus faecium E1679] gi|291595799|gb|EFF27087.1| helix-turn-helix domain protein [Enterococcus faecium E1679] Length = 190 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 25/73 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G IK RK TQ ++AI A+ S + E + SI + ++ + Sbjct: 2 DIGRNIKIARKQKKMTQNDLAIKASISRSYLADVEGNRYNPSIETLDSIARALDVQIGTL 61 Query: 91 YDGEVIDRRYEDV 103 Sbjct: 62 LSDSSKKNFSIKN 74 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K RK K M+Q + + S L++ E R P I+ I + + Sbjct: 1 MDIGRNIKIARKQKKMTQNDLAIKASISRSYLADVEGNRYNPSIETLDSIARALDVQIGT 60 Query: 172 IYFG 175 + Sbjct: 61 LLSD 64 >gi|258424598|ref|ZP_05687475.1| transcriptional regulator [Staphylococcus aureus A9635] gi|257845193|gb|EEV69230.1| transcriptional regulator [Staphylococcus aureus A9635] Length = 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G++Q + K G+ T+S E+ +P + A KI ++ + ++ I+ Sbjct: 1 MRNRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNFMPSVLTAIKIARIFNETVETIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IIEED 65 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q ++A A ++L E S+ A+ + + + + I+ Sbjct: 3 NRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNFMPSVLTAIKIARIFNETVETIFII 62 Query: 94 EVID 97 E + Sbjct: 63 EEDE 66 >gi|291301766|ref|YP_003513044.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570986|gb|ADD43951.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 80 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 RI +R +++++A + E G S S+ AL + +E+ + Sbjct: 10 NRIAMLRAERGISRRQLAEALGVHYQTIGYLERGEYSPSLYLALRIAQYFEVEVE 64 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + I R+ +R ++G+S+ + + LG+ T+ E+G P + A +I Q + + Sbjct: 4 NNEVIYNRIAMLRAERGISRRQLAEALGVHYQTIGYLERGEYSPSLYLALRIAQYFEVEV 63 Query: 170 DWIY 173 + ++ Sbjct: 64 EVVF 67 >gi|228988770|ref|ZP_04148846.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770950|gb|EEM19440.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 63 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDWIY 91 ++K+ R TQ ++A + + ++ ENG + SI+ + N IS + + Sbjct: 6 KVKEKRLNKGWTQSKLAEKSGVPQPTISHIENGTLKNPSIKSIKNIANALGISLEELL 63 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLD 170 ++K R +KG +Q + + G+P T+S+ E G P IK + I L+ Sbjct: 1 MFQLHKVKEKRLNKGWTQSKLAEKSGVPQPTISHIENGTLKNPSIKSIKNIANALGISLE 60 Query: 171 WIY 173 + Sbjct: 61 ELL 63 >gi|255038652|ref|YP_003089273.1| helix-turn-helix domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951408|gb|ACT96108.1| helix-turn-helix domain protein [Dyadobacter fermentans DSM 18053] Length = 85 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 33/77 (42%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 ++ I + V I+ IR+ + TQ+ +A+ ++A + E ++ + + Sbjct: 1 MSNTIEAKMRAVARNIRKIREYRDYTQEYLAMKLGISQNAYSKIELAYTRITLERLIQIA 60 Query: 81 NEYEISFDWIYDGEVID 97 ++ + +G+ + Sbjct: 61 QILDVDSVDLLNGDAEE 77 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 ++N A+ ++ IR+ + +Q LG+ + S E T ++ +I Sbjct: 1 MSNTIEAKMRAVARNIRKIREYRDYTQEYLAMKLGISQNAYSKIELAYTRITLERLIQIA 60 Query: 163 QVTKKHLDWIYFGD 176 Q+ + GD Sbjct: 61 QILDVDSVDLLNGD 74 >gi|213019902|ref|ZP_03335694.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994511|gb|EEB55167.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 243 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 37/102 (36%), Gaps = 1/102 (0%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ + +G +IK+ R TQK++A + ++ +E G + + + Sbjct: 90 VEEKVGSIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIA 149 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 I+ + + + ++ Y + +R Sbjct: 150 ETLSINIMDLLELTEDADDKVENELPNLIEEYKEIES-QELR 190 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 IS D I + E V K IG ++K R +G +Q + + + + Sbjct: 72 GISVD-IVAKTIGLSVDECVEEKVGSIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEI 130 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 SNYEQGR ++ I + ++ + E K Sbjct: 131 SNYEQGRVAIPLEKLYAIAETLSINIMDLLELTEDADDKVENE 173 >gi|157371454|ref|YP_001479443.1| DNA-binding transcriptional repressor PuuR [Serratia proteamaculans 568] gi|157323218|gb|ABV42315.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 185 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR +Q+ +A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSAFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + V + L Sbjct: 69 EPEAANEPKVVIEAEDL 85 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSA 65 Query: 172 IYFGDEVI-VPKSIKRAK 188 + E PK + A+ Sbjct: 66 FFAEPEAANEPKVVIEAE 83 >gi|50841668|ref|YP_054895.1| hypothetical protein PPA0180 [Propionibacterium acnes KPA171202] gi|289424412|ref|ZP_06426195.1| DNA-binding protein [Propionibacterium acnes SK187] gi|289428872|ref|ZP_06430552.1| DNA-binding protein [Propionibacterium acnes J165] gi|295129745|ref|YP_003580408.1| DNA-binding protein [Propionibacterium acnes SK137] gi|50839270|gb|AAT81937.1| hypothetical protein PPA0180 [Propionibacterium acnes KPA171202] gi|289155109|gb|EFD03791.1| DNA-binding protein [Propionibacterium acnes SK187] gi|289157873|gb|EFD06096.1| DNA-binding protein [Propionibacterium acnes J165] gi|291376427|gb|ADE00282.1| DNA-binding protein [Propionibacterium acnes SK137] gi|313764816|gb|EFS36180.1| helix-turn-helix protein [Propionibacterium acnes HL013PA1] gi|313772711|gb|EFS38677.1| helix-turn-helix protein [Propionibacterium acnes HL074PA1] gi|313792706|gb|EFS40787.1| helix-turn-helix protein [Propionibacterium acnes HL110PA1] gi|313803369|gb|EFS44551.1| helix-turn-helix protein [Propionibacterium acnes HL110PA2] gi|313807054|gb|EFS45552.1| helix-turn-helix protein [Propionibacterium acnes HL087PA2] gi|313811192|gb|EFS48906.1| helix-turn-helix protein [Propionibacterium acnes HL083PA1] gi|313814028|gb|EFS51742.1| helix-turn-helix protein [Propionibacterium acnes HL025PA1] gi|313815621|gb|EFS53335.1| helix-turn-helix protein [Propionibacterium acnes HL059PA1] gi|313817839|gb|EFS55553.1| helix-turn-helix protein [Propionibacterium acnes HL046PA2] gi|313821335|gb|EFS59049.1| helix-turn-helix protein [Propionibacterium acnes HL036PA1] gi|313824724|gb|EFS62438.1| helix-turn-helix protein [Propionibacterium acnes HL036PA2] gi|313826388|gb|EFS64102.1| helix-turn-helix protein [Propionibacterium acnes HL063PA1] gi|313828962|gb|EFS66676.1| helix-turn-helix protein [Propionibacterium acnes HL063PA2] gi|313832193|gb|EFS69907.1| helix-turn-helix protein [Propionibacterium acnes HL007PA1] gi|313834314|gb|EFS72028.1| helix-turn-helix protein [Propionibacterium acnes HL056PA1] gi|313839466|gb|EFS77180.1| helix-turn-helix protein [Propionibacterium acnes HL086PA1] gi|314916418|gb|EFS80249.1| helix-turn-helix protein [Propionibacterium acnes HL005PA4] gi|314917259|gb|EFS81090.1| helix-turn-helix protein [Propionibacterium acnes HL050PA1] gi|314921634|gb|EFS85465.1| helix-turn-helix protein [Propionibacterium acnes HL050PA3] gi|314926370|gb|EFS90201.1| helix-turn-helix protein [Propionibacterium acnes HL036PA3] gi|314930720|gb|EFS94551.1| helix-turn-helix protein [Propionibacterium acnes HL067PA1] gi|314959357|gb|EFT03459.1| helix-turn-helix protein [Propionibacterium acnes HL002PA1] gi|314961531|gb|EFT05632.1| helix-turn-helix protein [Propionibacterium acnes HL002PA2] gi|314964079|gb|EFT08179.1| helix-turn-helix protein [Propionibacterium acnes HL082PA1] gi|314969187|gb|EFT13285.1| helix-turn-helix protein [Propionibacterium acnes HL037PA1] gi|314974411|gb|EFT18506.1| helix-turn-helix protein [Propionibacterium acnes HL053PA1] gi|314976957|gb|EFT21052.1| helix-turn-helix protein [Propionibacterium acnes HL045PA1] gi|314980055|gb|EFT24149.1| helix-turn-helix protein [Propionibacterium acnes HL072PA2] gi|314985406|gb|EFT29498.1| helix-turn-helix protein [Propionibacterium acnes HL005PA1] gi|314986910|gb|EFT31002.1| helix-turn-helix protein [Propionibacterium acnes HL005PA2] gi|314990597|gb|EFT34688.1| helix-turn-helix protein [Propionibacterium acnes HL005PA3] gi|315078814|gb|EFT50836.1| helix-turn-helix protein [Propionibacterium acnes HL053PA2] gi|315081805|gb|EFT53781.1| helix-turn-helix protein [Propionibacterium acnes HL078PA1] gi|315082873|gb|EFT54849.1| helix-turn-helix protein [Propionibacterium acnes HL027PA2] gi|315086495|gb|EFT58471.1| helix-turn-helix protein [Propionibacterium acnes HL002PA3] gi|315088208|gb|EFT60184.1| helix-turn-helix protein [Propionibacterium acnes HL072PA1] gi|315097243|gb|EFT69219.1| helix-turn-helix protein [Propionibacterium acnes HL038PA1] gi|315099569|gb|EFT71545.1| helix-turn-helix protein [Propionibacterium acnes HL059PA2] gi|315102200|gb|EFT74176.1| helix-turn-helix protein [Propionibacterium acnes HL046PA1] gi|315107526|gb|EFT79502.1| helix-turn-helix protein [Propionibacterium acnes HL030PA1] gi|315109929|gb|EFT81905.1| helix-turn-helix protein [Propionibacterium acnes HL030PA2] gi|327331242|gb|EGE72981.1| putative DNA-binding protein [Propionibacterium acnes HL096PA2] gi|327333871|gb|EGE75588.1| putative DNA-binding protein [Propionibacterium acnes HL096PA3] gi|327444662|gb|EGE91316.1| helix-turn-helix protein [Propionibacterium acnes HL013PA2] gi|327447382|gb|EGE94036.1| helix-turn-helix protein [Propionibacterium acnes HL043PA1] gi|327450432|gb|EGE97086.1| helix-turn-helix protein [Propionibacterium acnes HL043PA2] gi|327454450|gb|EGF01105.1| helix-turn-helix protein [Propionibacterium acnes HL087PA3] gi|327456517|gb|EGF03172.1| helix-turn-helix protein [Propionibacterium acnes HL083PA2] gi|327457215|gb|EGF03870.1| helix-turn-helix protein [Propionibacterium acnes HL092PA1] gi|328756214|gb|EGF69830.1| helix-turn-helix protein [Propionibacterium acnes HL087PA1] gi|328758166|gb|EGF71782.1| helix-turn-helix protein [Propionibacterium acnes HL020PA1] gi|328758593|gb|EGF72209.1| helix-turn-helix protein [Propionibacterium acnes HL025PA2] gi|328759559|gb|EGF73165.1| putative DNA-binding protein [Propionibacterium acnes HL099PA1] gi|332674582|gb|AEE71398.1| putative DNA-binding protein [Propionibacterium acnes 266] Length = 369 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 7/142 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +++G RIK R TQ+ +A A++ NG ++ Sbjct: 1 MSEDMREIGERIKS-RMPEGMTQQSLAEAMEMTPDALSRMLNGKRGITMTELGKAAEVLG 59 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 S W+ G Y + + + R+ + + + Sbjct: 60 ASAHWLVTGHKDP--YAMRFAARHTYDFDTHRHINEGREKDREVLDHIAE---VYRAAHG 114 Query: 145 NYEQGRTIPEIKPARKIKQVTK 166 + + ++ K A+++++ Sbjct: 115 SL-RASSVVLPKTAKQMREALG 135 Score = 43.4 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG R+KS R +GM+Q + + M LS G+ + K +V Sbjct: 4 DMREIGERIKS-RMPEGMTQQSLAEAMEMTPDALSRMLNGKRGITMTELGKAAEVLGASA 62 Query: 170 DWIYFG 175 W+ G Sbjct: 63 HWLVTG 68 >gi|37676355|ref|NP_936751.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37200897|dbj|BAC96721.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] Length = 232 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Query: 15 QEYTLIITPEIRQYWKD---VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 + +L + E ++ + +G RIK++R T +E + S ++ EN S Sbjct: 33 EYPSLTLAKESQEQNIEPLKLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQISP 92 Query: 72 SIRYALYLRNEYEISFDWIYD 92 + + L + +I +++ Sbjct: 93 TFQAMQKLAHGLKIDMPQLFE 113 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 6/113 (5%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 E + ++ ++P +G R+K +R G++ E + G+ STLS E + Sbjct: 30 LYDEYPSLTLAKESQEQNIEPLKLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQ 89 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 P + +K+ K + ++ P K A G + + + K Sbjct: 90 ISPTFQAMQKLAHGLKIDMPQLF------EPPRKKVATGRRDITLAGQGKPHP 136 >gi|152977654|ref|YP_001377171.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026406|gb|ABS24176.1| putative transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 120 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I+ +RK+ N +Q+E+A AN + + E G + ++ + +I+ + + Sbjct: 8 IGLQIRILRKSKNLSQEELAFKANLHPTYIGQVERGEKNLTVSSLNTITTALDITLEEFF 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + ++ N K D ++ +++ Q + +++ Sbjct: 68 S-FIEPSNNKNNINFKSNDLLPYQNIIRLLQEINVNEQRKIFEII 111 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +++ +RK K +SQ E + + + E+G + I L+ + Sbjct: 11 QIRILRKSKNLSQEELAFKANLHPTYIGQVERGEKNLTVSSLNTITTALDITLEEFFSFI 70 Query: 177 EVIVPKSIKRAKGNQ 191 E K+ K N Sbjct: 71 EPSNNKNNINFKSND 85 >gi|85715705|ref|ZP_01046684.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85697358|gb|EAQ35237.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 149 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 25/75 (33%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG+R++ R +Q+++ V +E G + + + Sbjct: 26 KHVGSRVRMRRIMLGMSQEQLGEALGLTFQQVQKYEKGTNRVGASRIKQISEILGVPVSF 85 Query: 90 IYDGEVIDRRYEDVT 104 +++G + Sbjct: 86 LFEGSPTRISATEDP 100 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 R + +G+R++ R GMSQ + G+ LG+ + YE+G Sbjct: 5 LAAAFRRRDQDMSIKSPNYVDKHVGSRVRMRRIMLGMSQEQLGEALGLTFQQVQKYEKGT 64 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFG 175 ++I ++ + +++ G Sbjct: 65 NRVGASRIKQISEILGVPVSFLFEG 89 >gi|317473168|ref|ZP_07932466.1| hypothetical protein HMPREF1011_02816 [Anaerostipes sp. 3_2_56FAA] gi|316899392|gb|EFV21408.1| hypothetical protein HMPREF1011_02816 [Anaerostipes sp. 3_2_56FAA] Length = 82 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 35/65 (53%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+++R + G +Q + +G+ +T +N+E+ T P++ + ++ K LD YF + Sbjct: 8 PLRALRANIGFTQEQVADAIGVNRNTYANWEKYITFPDVPQLLLLSRLFKCSLDAFYFPE 67 Query: 177 EVIVP 181 + + Sbjct: 68 KTSLK 72 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 26/71 (36%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ +R TQ+++A + +E + + L L ++ S D Y E Sbjct: 9 LRALRANIGFTQEQVADAIGVNRNTYANWEKYITFPDVPQLLLLSRLFKCSLDAFYFPEK 68 Query: 96 IDRRYEDVTNK 106 + + + Sbjct: 69 TSLKLVNQGKE 79 >gi|303241951|ref|ZP_07328444.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590506|gb|EFL60261.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 103 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RIK++RK + + +++ ++ EN + S S L + + I+ Sbjct: 5 DLGKRIKELRKQSGLSTTKLSNLTGISSGYISELENNLKSPSAEILLKIIDALNITVASF 64 Query: 91 YDGEVIDRRYEDVTN 105 + + D+ Sbjct: 65 FYEFPSEPLSSDLKE 79 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+K +RK G+S + L G+ + +S E P + KI Sbjct: 1 MNNIDLGKRIKELRKQSGLSTTKLSNLTGISSGYISELENNLKSPSAEILLKIIDALNIT 60 Query: 169 LDWIYFG 175 + ++ Sbjct: 61 VASFFYE 67 >gi|229492934|ref|ZP_04386730.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] gi|229320208|gb|EEN86033.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] Length = 154 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 18/111 (16%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 R T+ ++A A+ SA+ +E G + + + E+ + + D Sbjct: 19 RARTLRKLTRSDLARIASVSLSALGNWEAGRGTPQVDTLARVAAALEVPMETLIPIPEKD 78 Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 R L +R G++Q + GK G+ + + E+ Sbjct: 79 RT------------------LADLRNIAGITQPQLGKATGISTTAIGALER 111 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 ++ L + A ++ R + +++ + ++ + S L N+E GR P++ + Sbjct: 1 MTTVTRRILKGFDPAALIR-ARTLRKLTRSDLARIASVSLSALGNWEAGRGTPQVDTLAR 59 Query: 161 IKQVTKKHLDWIY 173 + + ++ + Sbjct: 60 VAAALEVPMETLI 72 >gi|229029469|ref|ZP_04185551.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] gi|228731822|gb|EEL82722.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] Length = 404 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ E+A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTELA-GSKLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLL 62 Query: 92 DGEV 95 + + Sbjct: 63 EDDD 66 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q E + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTELAG-SKLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLLED 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+ + + I K Q K++K D+ Sbjct: 65 DDGEIVELIT--KMEQLIKENKCDE 87 >gi|255036397|ref|YP_003087018.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254949153|gb|ACT93853.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 496 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 14/154 (9%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + G ++K +R + E++ + S +N E G L L Sbjct: 1 MAINQDNVRLVFGLKLKQLRLDKGMSLSELSQKSGLSISYINEIEKGKKYPKSDKILALA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPN 140 + E+ +D + ++ R + + L + + I+ LL + + Sbjct: 61 SAIEVDYDTLVSLKLSKR-------LEPISDLLSSNVLTEL--PLELFGIDPANLLEILS 111 Query: 141 STLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 + + +I + ++ YF Sbjct: 112 DAPTKISAF-----VGTLIEIARNYNMSIEKFYF 140 >gi|167770464|ref|ZP_02442517.1| hypothetical protein ANACOL_01809 [Anaerotruncus colihominis DSM 17241] gi|167667059|gb|EDS11189.1| hypothetical protein ANACOL_01809 [Anaerotruncus colihominis DSM 17241] Length = 112 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +RKA Q A ++A ++ ENG S RY + + + ++ +W+ G Sbjct: 3 ERLKQLRKALKMNQTNFAKELGITQTAYSMIENGNNPLSDRYIKVICSCFNVNENWLRTG 62 Query: 94 EVIDRRYED 102 Sbjct: 63 NGDMFFSSP 71 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +RK M+Q F K LG+ + S E G + + I + +W+ Sbjct: 1 MIERLKQLRKALKMNQTNFAKELGITQTAYSMIENGNNPLSDRYIKVICSCFNVNENWLR 60 Query: 174 FGD 176 G+ Sbjct: 61 TGN 63 >gi|19263421|ref|NP_597807.1| DNA binding protein [Streptococcus phage Sfi21] Length = 170 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +R++ T+ E+A + V +E+G S R A L + + +S ++ Sbjct: 2 NRLYLLRESRKITRVELAEKIGVSKLTVLKWEHGTSKISRREAKKLADFFGVSVGYLLGL 61 Query: 94 EVIDRRYEDV 103 + + Sbjct: 62 DTTENDSITD 71 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 30/68 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R+ + ++++E + +G+ T+ +E G + + A+K+ + ++ Sbjct: 1 MNRLYLLRESRKITRVELAEKIGVSKLTVLKWEHGTSKISRREAKKLADFFGVSVGYLLG 60 Query: 175 GDEVIVPK 182 D Sbjct: 61 LDTTENDS 68 >gi|296332294|ref|ZP_06874756.1| transcriptional regulator of ansAB (Xre family) protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674995|ref|YP_003866667.1| transcriptional regulator of ansAB (Xre family) protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150608|gb|EFG91495.1| transcriptional regulator of ansAB (Xre family) protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413239|gb|ADM38358.1| transcriptional regulator of ansAB (Xre family) protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 116 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 27/72 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ ++RK N + + A +S +E+G S+ L + ++ + D + Sbjct: 4 DRLTELRKKKNWSLQYTADLLGIAKSTYAGYESGYRRPSLEALAMLADLFDTTCDELLGR 63 Query: 94 EVIDRRYEDVTN 105 E + Sbjct: 64 EKQKQTAPQTIE 75 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL +RK K S LLG+ ST + YE G P ++ + + D + Sbjct: 1 MNLDRLTELRKKKNWSLQYTADLLGIAKSTYAGYESGYRRPSLEALAMLADLFDTTCDEL 60 Query: 173 YFGDE 177 ++ Sbjct: 61 LGREK 65 >gi|295102505|emb|CBL00050.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 271 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 +G R+KD+R N + +A +SA++ +E+ + SI L Y ++ D++ Sbjct: 7 LGERLKDLRVERNLKLEALAEQTGLSKSALSKYESDDVTDLSIYAVTTLAEFYGVTTDYL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 +R + V + L + L++ R + + Sbjct: 67 LGVTENKKRSDAVLSDLHLSD-GVVDVLRNGRFNHRLLCE 105 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R ++ + + G+ S LS YE T I + + D++ Sbjct: 9 ERLKDLRVERNLKLEALAEQTGLSKSALSKYESDDVTDLSIYAVTTLAEFYGVTTDYLLG 68 Query: 175 GDE 177 E Sbjct: 69 VTE 71 >gi|289549623|ref|YP_003470527.1| Transcriptional regulator, PBSX family [Staphylococcus lugdunensis HKU09-01] gi|315659741|ref|ZP_07912600.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289179155|gb|ADC86400.1| Transcriptional regulator, PBSX family [Staphylococcus lugdunensis HKU09-01] gi|315495029|gb|EFU83365.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 63 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK RK +Q+ ++ N +N EN ++ A L +++ + D ++ Sbjct: 3 NKIKAYRKKIGMSQETLSKNVNVSRQTINAIENNKYDPTLMLAFKLAKQFDTTVDDLFST 62 Query: 94 E 94 + Sbjct: 63 K 63 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K+ RK GMSQ K + + T++ E + P + A K+ + +D ++ Sbjct: 1 MKNKIKAYRKKIGMSQETLSKNVNVSRQTINAIENNKYDPTLMLAFKLAKQFDTTVDDLF 60 >gi|268608481|ref|ZP_06142208.1| hypothetical protein RflaF_03150 [Ruminococcus flavefaciens FD-1] gi|268610136|ref|ZP_06143863.1| hypothetical protein RflaF_11644 [Ruminococcus flavefaciens FD-1] gi|268611602|ref|ZP_06145329.1| hypothetical protein RflaF_19116 [Ruminococcus flavefaciens FD-1] Length = 117 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 +I + +K VG I RK + Q E+ A+ + ++ E S+ L Sbjct: 1 MIEVSGVELDYKQVGLNIARRRKELHLKQVEVCELADLNDKYLSCIETARSIPSLEVFLR 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVT 104 + N + D + G + Y ++T Sbjct: 61 ICNALNTTPDHLLVGAIKSPDYSEMT 86 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 LD +G + RK+ + Q+E +L + + LS E R+IP ++ +I Sbjct: 8 ELDYKQVGLNIARRRKELHLKQVEVCELADLNDKYLSCIETARSIPSLEVFLRICNALNT 67 Query: 168 HLDWIYFG 175 D + G Sbjct: 68 TPDHLLVG 75 >gi|269956967|ref|YP_003326756.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305648|gb|ACZ31198.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 101 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 23/59 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++ +R +T ++A A ++ E GM S + +++ + Sbjct: 14 LGDYLRRLRHRRGETLDDVARRAGVSPQYLSEVERGMKEPSSEMIAAIAGALDVTLVDL 72 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +G L+ +R +G + + + G+ LS E+G P + I L Sbjct: 12 HVLGDYLRRLRHRRGETLDDVARRAGVSPQYLSEVERGMKEPSSEMIAAIAGALDVTLVD 71 Query: 172 I 172 + Sbjct: 72 L 72 >gi|160915254|ref|ZP_02077467.1| hypothetical protein EUBDOL_01262 [Eubacterium dolichum DSM 3991] gi|158433053|gb|EDP11342.1| hypothetical protein EUBDOL_01262 [Eubacterium dolichum DSM 3991] Length = 151 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 13/103 (12%) Query: 32 VGTRIKDIRKA------NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +K +RK ++ ++ SA +ENG + + + L N +++ Sbjct: 2 LAENLKKLRKQKEQKEHRRISKSNVSKELGLDLSAYGKWENGDRNPDMFSLIKLANYFDV 61 Query: 86 SFDWIYDGEVIDR-------RYEDVTNKKRLDPYAIGARLKSI 121 S D++ D E + + + D + LK+ Sbjct: 62 SIDYLLDNEKSTPLCDEVLEINKAMEKVNQEDRQRMVETLKAA 104 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 7/95 (7%) Query: 113 AIGARLKSIRK------DKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + LK +RK + +S+ K LG+ S +E G P++ K+ Sbjct: 1 MLAENLKKLRKQKEQKEHRRISKSNVSKELGLDLSAYGKWENGDRNPDMFSLIKLANYFD 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 +D++ +E P + + N++ +K ++ + Sbjct: 61 VSIDYLL-DNEKSTPLCDEVLEINKAMEKVNQEDR 94 >gi|161598515|ref|YP_001573896.1| hypothetical protein pEDINA_p24 [Staphylococcus aureus] gi|27531748|dbj|BAC54516.1| unnamed protein product [Staphylococcus aureus] gi|270055238|gb|ACZ58731.1| transcriptional regulator, putative [Staphylococcus aureus] gi|270055460|gb|ACZ58953.1| transcriptional regulator, putative [Staphylococcus aureus] gi|282166034|gb|ADA80054.1| transcriptional regulator, putative [Staphylococcus aureus] Length = 66 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK+ RK +Q ++A +NL EN + S+ L L + E + ++ Sbjct: 2 NKIKEFRKKKGLSQLDLARNILVSRQTINLIENNKYNPSLDLCLKLASVLETDLNSLFWE 61 Query: 94 EVI 96 E Sbjct: 62 EKD 64 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 33/66 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++K RK KG+SQ++ + + + T++ E + P + K+ V + L+ +++ Sbjct: 1 MNKIKEFRKKKGLSQLDLARNILVSRQTINLIENNKYNPSLDLCLKLASVLETDLNSLFW 60 Query: 175 GDEVIV 180 ++ Sbjct: 61 EEKDHE 66 >gi|332291655|ref|YP_004430264.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169741|gb|AEE18996.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 274 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 5/95 (5%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G +I ++R+ TQ+E+ N + E G + + + D Sbjct: 4 QPELGQKILELRQQKGLTQEELVAQCNISVRTIQRIEAGETMPRVYTIKTILFALDRDLD 63 Query: 89 WI-----YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ +V ++ + + + Sbjct: 64 DLQEDTIFEAKVKKAMLFEIDESRDVSYLFKQLHI 98 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + +G ++ +R+ KG++Q E + T+ E G T+P + + I + Sbjct: 1 MMKQPELGQKILELRQQKGLTQEELVAQCNISVRTIQRIEAGETMPRVYTIKTILFALDR 60 Query: 168 HLDWIYFGDEVIVPKSIKRA 187 LD + ++ I +K+A Sbjct: 61 DLDDL--QEDTIFEAKVKKA 78 >gi|331082365|ref|ZP_08331491.1| hypothetical protein HMPREF0992_00415 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400851|gb|EGG80452.1| hypothetical protein HMPREF0992_00415 [Lachnospiraceae bacterium 6_1_63FAA] Length = 90 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%) Query: 3 LNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVN 62 ++ F + + L++ E D+ + RK N TQKE+A ++ ++ Sbjct: 1 MSEFRDFLDEQLEDKEFREEYENMSPEFDIIRAMVAARKERNMTQKELAEKTGITQADIS 60 Query: 63 LFENGMCSTSIRYALYLRN 81 ENG + S+ L Sbjct: 61 RIENGTRNPSLDMIKRLAK 79 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 32/73 (43%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + E ++ + + + I + + RK++ M+Q E + G+ + +S E G Sbjct: 7 FLDEQLEDKEFREEYENMSPEFDIIRAMVAARKERNMTQKELAEKTGITQADISRIENGT 66 Query: 151 TIPEIKPARKIKQ 163 P + +++ + Sbjct: 67 RNPSLDMIKRLAK 79 >gi|331702111|ref|YP_004399070.1| XRE family transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129454|gb|AEB74007.1| transcriptional regulator, XRE family [Lactobacillus buchneri NRRL B-30929] Length = 66 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+++ RK +Q +A +NL EN + S++ + L E + ++ Sbjct: 2 NRVREYRKQVGISQFALAEKVGVARQTINLIENDKYNPSLKLCISLAEELGTDLNTLF 59 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R++ RK G+SQ + +G+ T++ E + P +K + + L+ +++ Sbjct: 1 MNRVREYRKQVGISQFALAEKVGVARQTINLIENDKYNPSLKLCISLAEELGTDLNTLFW 60 >gi|312129359|ref|YP_003996699.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311905905|gb|ADQ16346.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 252 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 29/74 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +R +Q+ +A +E+GM I L + Y++S D + Sbjct: 4 LSDNMRFLRARMGLSQQAVADELIITRGRYAKYEDGMSEPPIELLLKISRFYKVSIDLLV 63 Query: 92 DGEVIDRRYEDVTN 105 ++ +++ Sbjct: 64 SVDIRRVPLDELQQ 77 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++ +R G+SQ L + + YE G + P I+ KI + K +D + D Sbjct: 7 NMRFLRARMGLSQQAVADELIITRGRYAKYEDGMSEPPIELLLKISRFYKVSIDLLVSVD 66 Query: 177 EVIVP 181 VP Sbjct: 67 IRRVP 71 >gi|311031854|ref|ZP_07709944.1| transcriptional regulator SinR [Bacillus sp. m3-13] Length = 110 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK R+ + E+A A +S ++ E + S+++ + + ++ + + Sbjct: 2 IGERIKKYREQRKMSMSELAERAGVAKSYLSSIERNLQSNPSVQFLEKVSSVLGVNVNTL 61 Query: 91 YDGEVIDRRYEDVTNK------KRLDPYAIGARLKSIRKDKGMSQIE 131 E + E++ + + +D + + + + Sbjct: 62 LHDEDEAQAKENLDREWATLVKEAMDSGVTKDQFREFLEFNKWKINQ 108 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLDW 171 IG R+K R+ + MS E + G+ S LS+ E+ ++ P ++ K+ V +++ Sbjct: 1 MIGERIKKYREQRKMSMSELAERAGVAKSYLSSIERNLQSNPSVQFLEKVSSVLGVNVNT 60 Query: 172 IYFGDEVIVPKS 183 + ++ K Sbjct: 61 LLHDEDEAQAKE 72 >gi|300312210|ref|YP_003776302.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074995|gb|ADJ64394.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 96 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G+ I+ R +Q +A AN S +++ EN ++ + + + + Sbjct: 2 NLGSAIQLCRVKQGLSQSALAEKANCSVSYLSMLENSKRDPTLSTIKSIAGALGVPIEIL 61 Query: 91 YD 92 + Sbjct: 62 FF 63 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ R +G+SQ + S LS E + P + + I ++ ++F Sbjct: 7 IQLCRVKQGLSQSALAEKANCSVSYLSMLENSKRDPTLSTIKSIAGALGVPIEILFF 63 >gi|294794380|ref|ZP_06759516.1| DNA-binding protein [Veillonella sp. 3_1_44] gi|294454710|gb|EFG23083.1| DNA-binding protein [Veillonella sp. 3_1_44] Length = 127 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE--NGMCSTSIRYALYLR 80 P ++ + +G +I IR + N +Q+E+A S ++ E G+ S+ + Sbjct: 19 PFLQHQYVCLGHKIAIIRVSLNMSQQELARHIGISRSYLSKLECGTGISGMSLEILFKIA 78 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 ++I+ + V+D + + + K ++K Sbjct: 79 QAFQINVGQLVRLRVVDYKNCNAHLTSHYKRLELLNHTKRTSRNK 123 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE--QGRTIPEIKPARKIKQVTKKH 168 +G ++ IR MSQ E + +G+ S LS E G + ++ KI Q + + Sbjct: 25 YVCLGHKIAIIRVSLNMSQQELARHIGISRSYLSKLECGTGISGMSLEILFKIAQAFQIN 84 Query: 169 LDWIY 173 + + Sbjct: 85 VGQLV 89 >gi|228911093|ref|ZP_04074900.1| Transcription regulator, probable-related protein [Bacillus thuringiensis IBL 200] gi|228848597|gb|EEM93444.1| Transcription regulator, probable-related protein [Bacillus thuringiensis IBL 200] Length = 68 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K RK+ +Q E+A N +NL EN + S+ + L + + ++ Sbjct: 7 NNVKKYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 64 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K RK +G+SQ+E K + + T++ E + P + ++ + K L+ ++ Sbjct: 5 YLNNVKKYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 64 Query: 174 FG 175 + Sbjct: 65 WE 66 >gi|229192131|ref|ZP_04319099.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228591338|gb|EEK49189.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 114 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 18/70 (25%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K R + + TQ E S V E + + +S D + Sbjct: 4 FGENLKKFRSSRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALM 63 Query: 92 DGEVIDRRYE 101 Sbjct: 64 GRTSTPYEKN 73 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK R + ++Q EFG+ + + S + N E P++ +I +D Sbjct: 1 MNTFGENLKKFRSSRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVD 60 Query: 171 WIYFGDEVIVPKSIKRA 187 + K+I A Sbjct: 61 ALMGRTSTPYEKNIANA 77 >gi|291287633|ref|YP_003504449.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884793|gb|ADD68493.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 106 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+R+KD K ++Q E A S ++ + G I + + I D + Sbjct: 13 LGSRLKDEIKRTGQSQLEFAKKLGISPSRLSNYVTGARLPDIFTLNSIADLLGIPLDSLL 72 Query: 92 DGEVI 96 + Sbjct: 73 SDDYD 77 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +RLK K G SQ+EF K LG+ S LSNY G +P+I I + LD + Sbjct: 15 SRLKDEIKRTGQSQLEFAKKLGISPSRLSNYVTGARLPDIFTLNSIADLLGIPLDSLLSD 74 Query: 176 D 176 D Sbjct: 75 D 75 >gi|219855102|ref|YP_002472224.1| hypothetical protein CKR_1759 [Clostridium kluyveri NBRC 12016] gi|219568826|dbj|BAH06810.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 83 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I++IR N TQ+E+A +S ++ +ENG+ I + E+ + Sbjct: 5 KVGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKL 64 Query: 91 YDGEVIDRRY 100 + E + + Sbjct: 65 LELEETEIKK 74 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 36/81 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G +++IR K ++Q E ++ G+ S +S YE G IP I I + + Sbjct: 1 MTAMKVGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVP 60 Query: 169 LDWIYFGDEVIVPKSIKRAKG 189 + + +E + K A Sbjct: 61 ISKLLELEETEIKKGSSIANS 81 >gi|218532679|ref|YP_002423495.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218524982|gb|ACK85567.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 134 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 1/106 (0%) Query: 16 EYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 + + + + VG RI +RK+ +Q + V +ENGM Sbjct: 2 DIPSVPPKRATEQDRIVGERIHVLRKSKGLSQTALGSAIGVTFQQVQKYENGMNRVGASR 61 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +S ++ E E L L++ Sbjct: 62 LSDIARVLGVSVA-VFFEEGDAAAPEKTEAFGLLHAPGAVDLLRAF 106 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ +RK KG+SQ G +G+ + YE G I +V + + Sbjct: 20 ERIHVLRKSKGLSQTALGSAIGVTFQQVQKYENGMNRVGASRLSDIARVLGVSVAVFFEE 79 Query: 176 DEVIVPKSIK 185 + P+ + Sbjct: 80 GDAAAPEKTE 89 >gi|188992517|ref|YP_001904527.1| hypothetical protein xccb100_3122 [Xanthomonas campestris pv. campestris str. B100] gi|167734277|emb|CAP52487.1| hypothetical protein predicted by Glimmer/Critica [Xanthomonas campestris pv. campestris] Length = 128 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 46/144 (31%), Gaps = 25/144 (17%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYA 76 + P + V R++ R+ +Q+E+ + + ++ +E+G S S+ Sbjct: 1 MKPATPAPREIVAARLRQARERQGLSQREVGMRMGLDKDTASARISRYESGAMSISLEAL 60 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + E+ ++ + + ++ + Q + K+L Sbjct: 61 FEMAEALEVPPAFLLASSP-----------------GMADAIMALGEQSHTQQDQLAKVL 103 Query: 137 GMPNSTLSNYEQGRTIPEIKPARK 160 LS E ++ K Sbjct: 104 ----VALSKLEPKVRAAHVQKLLK 123 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNST----LSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 ARL+ R+ +G+SQ E G +G+ T +S YE G ++ ++ + + + Sbjct: 14 ARLRQARERQGLSQREVGMRMGLDKDTASARISRYESGAMSISLEALFEMAEALEVPPAF 73 Query: 172 IY 173 + Sbjct: 74 LL 75 >gi|119026373|ref|YP_910218.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] gi|118765957|dbj|BAF40136.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] Length = 105 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 31/65 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R ++G+ Q + L+ + T+ EQG+ P ++ A + + ++ ++ Sbjct: 40 MKTSLKFKRMERGLKQSDLADLVNVRRETIGRLEQGQYCPSLRLAMDLAKALDTTVEDLF 99 Query: 174 FGDEV 178 D+ Sbjct: 100 SFDDE 104 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R Q ++A N + E G S+R A+ L + + + ++ + Sbjct: 44 LKFKRMERGLKQSDLADLVNVRRETIGRLEQGQYCPSLRLAMDLAKALDTTVEDLFSFDD 103 Query: 96 ID 97 + Sbjct: 104 EE 105 >gi|108805694|ref|YP_645631.1| MerR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766937|gb|ABG05819.1| transcriptional regulator, MerR family [Rubrobacter xylanophilus DSM 9941] Length = 292 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 31/77 (40%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R++ +R KT KE++ S ++ E G S+ L Y ++ ++ Sbjct: 119 GERLRRLRVKARKTLKEVSEATGLSISFISALERGGSGASVASLRRLAEAYGVTMRELFG 178 Query: 93 GEVIDRRYEDVTNKKRL 109 ++ +++ + Sbjct: 179 TDLEQNSPLVRAHERPV 195 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 18/172 (10%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CST----------------SIRY 75 G +++D + + E+A + L+E +R Sbjct: 20 GKQVRDGNEGIGFSIGEVAQALGVAPQTLRLWEREQLVRPHRTERGYRVYTEEDVERLRQ 79 Query: 76 ALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 LR ++F I + P G RL+ +R + E + Sbjct: 80 VKRLRKNEGLNFAAIRKQLGPPPDKNGERPPEGRGPGVPGERLRRLRVKARKTLKEVSEA 139 Query: 136 LGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 G+ S +S E+G + + R++ + + ++ G ++ + RA Sbjct: 140 TGLSISFISALERGGSGASVASLRRLAEAYGVTMRELF-GTDLEQNSPLVRA 190 >gi|90577969|ref|ZP_01233780.1| putative transcriptional regulator, HTH_3family protein [Vibrio angustum S14] gi|90441055|gb|EAS66235.1| putative transcriptional regulator, HTH_3family protein [Vibrio angustum S14] Length = 208 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 14 LQEYTLIITPEIRQYWKDV-----GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 + + + E Q + + G R+K+IR + T +E + S ++ EN Sbjct: 6 IHDVYPSMRIEKTQAAEHIAPLKLGERLKEIRVSLGLTLEEASKRTGLARSTLSKIENEQ 65 Query: 69 CSTSIRYALYLRNEYEISFDWIYD 92 S + + L I +++ Sbjct: 66 ISPTFQAMQKLATGLAIDIPQLFE 89 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%) Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 D R E + + P +G RLK IR G++ E K G+ STLS Sbjct: 2 TDEYIHDVYPSMRIEKTQAAEHIAPLKLGERLKEIRVSLGLTLEEASKRTGLARSTLSKI 61 Query: 147 EQGRTIPEIKPARKIKQVTKKHLDWIY 173 E + P + +K+ + ++ Sbjct: 62 ENEQISPTFQAMQKLATGLAIDIPQLF 88 >gi|295099748|emb|CBK88837.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R + + TQKE+A + +N+ E G + +I+ + + + D ++ E Sbjct: 7 MKAARASKDMTQKELAEAVDVSRQTINMIEKGEYNPTIKLCRAICRALDKTLDDLFWEED 66 Query: 96 I 96 Sbjct: 67 E 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R K M+Q E + + + T++ E+G P IK R I + K LD +++ ++ Sbjct: 7 MKAARASKDMTQKELAEAVDVSRQTINMIEKGEYNPTIKLCRAICRALDKTLDDLFWEED 66 Query: 178 V 178 Sbjct: 67 E 67 >gi|291296947|ref|YP_003508345.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290471906|gb|ADD29325.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 230 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 3/108 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +R +Q+++A A + V+ E G + S+ L N ++ + Sbjct: 8 LAQNLRTLRYQRGLSQEDLADLAGLHRTYVSEVERGKRNLSLDNLERLANALQVEAAKLV 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK-DKGMSQIEFGKLLGM 138 + + L PY ++ + R + Q GKLL + Sbjct: 68 SPNSFSTTDIAI--LEALFPYIRRYQILASRYGIADIFQDNGGKLLEI 113 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 25/52 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L+++R +G+SQ + L G+ + +S E+G+ + ++ + Sbjct: 10 QNLRTLRYQRGLSQEDLADLAGLHRTYVSEVERGKRNLSLDNLERLANALQV 61 >gi|266623939|ref|ZP_06116874.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288864240|gb|EFC96538.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 147 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDW 89 ++G RI+ +R+ TQ E+A + V +ENG + + + L + Sbjct: 2 NIGERIRGLREKQEMTQTELAEKIGSTKQTVYKYENGVVTNIPYDKLILLAKALGTTPSS 61 Query: 90 IYDGEVIDRRYEDV 103 + + I+ + Sbjct: 62 LMGWDKIEEAINEE 75 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLD 170 IG R++ +R+ + M+Q E + +G T+ YE G T + + Sbjct: 1 MNIGERIRGLREKQEMTQTELAEKIGSTKQTVYKYENGVVTNIPYDKLILLAKALGTTPS 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 + D++ + + + + +K+ Sbjct: 61 SLMGWDKIEEAINEEFTRLDNLTKQ 85 >gi|229826230|ref|ZP_04452299.1| hypothetical protein GCWU000182_01602 [Abiotrophia defectiva ATCC 49176] gi|229789100|gb|EEP25214.1| hypothetical protein GCWU000182_01602 [Abiotrophia defectiva ATCC 49176] Length = 243 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 30/85 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G IK R + TQ E+A N+ + + +E G S + + + ++ ++ Sbjct: 8 LGNSIKKCRTNRHLTQMELAKLINKSNTTLAKYEKGEISIDVATLVEIAKVLQVPLEYFI 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + P + Sbjct: 68 EAIKEKSEKTAPPQSDSIIPVFFSS 92 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K R ++ ++Q+E KL+ N+TL+ YE+G ++ +I +V + L++ Sbjct: 10 NSIKKCRTNRHLTQMELAKLINKSNTTLAKYEKGEISIDVATLVEIAKVLQVPLEYFI-- 67 Query: 176 DEVIVPKSIKRA 187 E I KS K A Sbjct: 68 -EAIKEKSEKTA 78 >gi|256389948|ref|YP_003111512.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356174|gb|ACU69671.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 288 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 7/88 (7%) Query: 7 LETSLKSLQEYTLIITPEIRQYWK-------DVGTRIKDIRKANNKTQKEMAIGANQLES 59 + T+ + T+ P Q+ K + G ++ R+ N +Q +++ + Sbjct: 1 MSTATIAAPRTTVPTDPTAAQFKKQPPTAPAEFGAMLRAWRRTRNVSQLDLSSASGVSTR 60 Query: 60 AVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ E G S L L +E E+ Sbjct: 61 HLSFMETGRAKPSREMVLRLADELEVPL 88 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 D + P GA L++ R+ + +SQ++ G+ LS E GR P Sbjct: 14 PTDPTAAQFKKQPPTAPAEFGAMLRAWRRTRNVSQLDLSSASGVSTRHLSFMETGRAKPS 73 Query: 155 IKPARKIKQVTKKHL 169 + ++ + L Sbjct: 74 REMVLRLADELEVPL 88 >gi|229065829|ref|ZP_04201033.1| hypothetical protein bcere0026_58150 [Bacillus cereus AH603] gi|228715445|gb|EEL67269.1| hypothetical protein bcere0026_58150 [Bacillus cereus AH603] Length = 185 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 35/85 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ + ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKAIREKEKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVILRNDVQVL 85 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKAIREKEKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLI 67 >gi|227522686|ref|ZP_03952735.1| possible transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227090134|gb|EEI25446.1| possible transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 159 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 1/96 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + RI ++ + +Q ++A +A + +NG S L + Sbjct: 30 ASHLEQSLAERIAYLQDRSQFSQADIAKKMGIDRTAFSKIKNGTRKVSADELNKLSEIFG 89 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 +S D++ G + + + + D + L Sbjct: 90 VSTDYLL-GNTVSQDGKAPSWATEKDKNDLKHYLSE 124 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 5/119 (4%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 IS I +R E ++ R+ ++ SQ + K +G+ + Sbjct: 7 NISLFAIMLKWCCAKRTEGGNKMASHLEQSLAERIAYLQDRSQFSQADIAKKMGIDRTAF 66 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 S + G K+ ++ D++ K+ + +++K K D K Sbjct: 67 SKIKNGTRKVSADELNKLSEIFGVSTDYLLGNTVSQDGKAP-----SWATEKDKNDLKH 120 >gi|167758281|ref|ZP_02430408.1| hypothetical protein CLOSCI_00619 [Clostridium scindens ATCC 35704] gi|167664178|gb|EDS08308.1| hypothetical protein CLOSCI_00619 [Clostridium scindens ATCC 35704] Length = 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++IR+ + Q+E+A + ENG + SI A + + + + I+ Sbjct: 3 NRLEEIRREHGLKQEELADILEVSRQTIGSLENGRYNPSIILAFKIARYFHRNIEDIFIY 62 Query: 94 EVIDR 98 E + Sbjct: 63 EEESK 67 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IR++ G+ Q E +L + T+ + E GR P I A KI + ++++ I+ Sbjct: 1 MKNRLEEIRREHGLKQEELADILEVSRQTIGSLENGRYNPSIILAFKIARYFHRNIEDIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEEE 65 >gi|13471465|ref|NP_103031.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022207|dbj|BAB48817.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 187 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI R + + E+A + ++ ++ E GM S + + + + ++ + Sbjct: 12 IGRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIAAAFGMTLSTLI 71 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+ + R + S E + G+ + LS E+G T P +I L + Sbjct: 14 RRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIAAAFGMTLSTLIAR 73 Query: 176 DEVIVPKSIKRAK 188 E+ ++ A Sbjct: 74 AELQGGGLLREAD 86 >gi|146280227|ref|YP_001170384.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC 17025] gi|145558468|gb|ABP73079.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC 17025] Length = 652 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 24/66 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I R+ T +A + + ++ E G + ++ L + ++F + Sbjct: 13 IGANIARARQRRGLTLDGLAELSCVSRATISALERGHGNPGVQTLWSLADALGLNFAALL 72 Query: 92 DGEVID 97 E Sbjct: 73 GDEPAS 78 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A + R+ +G++ +L + +T+S E+G P ++ + + + G Sbjct: 15 ANIARARQRRGLTLDGLAELSCVSRATISALERGHGNPGVQTLWSLADALGLNFAALL-G 73 Query: 176 DEV 178 DE Sbjct: 74 DEP 76 >gi|322412102|gb|EFY03010.1| Transcriptional regulator, Cro/CI family protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 71 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RLK +R G++Q E KL G+ T+S E+ P I A KI +V + ++ + Sbjct: 4 VLKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYTPSIVIAMKIAKVFHEPVEEV 63 Query: 173 YFGDEVIV 180 + EV Sbjct: 64 FRLVEVEE 71 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+K++R + Q EMA A ++L E + SI A+ + + + ++ Sbjct: 7 NRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYTPSIVIAMKIAKVFHEPVEEVFR 65 >gi|302545536|ref|ZP_07297878.1| HTH_3 family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463154|gb|EFL26247.1| HTH_3 family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 81 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 29/74 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + V R+ +R +++ +A + E G + S+ AL + +++ + Sbjct: 3 EQVHNRLAMVRAERKVSRQALAEAVGVHYQTIGYIERGQYNPSLDLALRVAEFFDLPVEA 62 Query: 90 IYDGEVIDRRYEDV 103 ++ ++V Sbjct: 63 LFSLRPFRPLTDEV 76 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 29/59 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RL +R ++ +S+ + +G+ T+ E+G+ P + A ++ + ++ ++ Sbjct: 6 HNRLAMVRAERKVSRQALAEAVGVHYQTIGYIERGQYNPSLDLALRVAEFFDLPVEALF 64 >gi|241889873|ref|ZP_04777171.1| putative prophage LambdaCh01, repressor protein [Gemella haemolysans ATCC 10379] gi|241863495|gb|EER67879.1| putative prophage LambdaCh01, repressor protein [Gemella haemolysans ATCC 10379] Length = 210 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY-DG 93 R K K N Q E+A N S+++ + G + + L ++ DW+ D Sbjct: 8 RFKQCLKEKNIKQAELARSTNITPSSISDWSKGKYTPKRDKLIILAEYLSVNPDWLVGDS 67 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + +D + D ++L Sbjct: 68 DTMDIETPKEKSFNTEDFSDDVSKL 92 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 119 KSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEV 178 K K+K + Q E + + S++S++ +G+ P+ + + + DW+ + Sbjct: 10 KQCLKEKNIKQAELARSTNITPSSISDWSKGKYTPKRDKLIILAEYLSVNPDWLVGDSDT 69 Query: 179 IVPKSIKRAKGNQS 192 + ++ K N Sbjct: 70 MDIETPKEKSFNTE 83 >gi|189219415|ref|YP_001940056.1| Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum infernorum V4] gi|189186273|gb|ACD83458.1| Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum infernorum V4] Length = 386 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + L+ R KG+SQ E +G+ T+ E G +P A ++ +V +K +++++ Sbjct: 13 SPLRLARIGKGLSQKELAAKIGVSRQTIHAMENGLYVPNTAVALRLARVLEKTVEFLFPY 72 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + + + + S + Sbjct: 73 SPDFIEADVLVDENQKISTR 92 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ R +QKE+A ++ ENG+ + AL L E + ++++ Sbjct: 15 LRLARIGKGLSQKELAAKIGVSRQTIHAMENGLYVPNTAVALRLARVLEKTVEFLFP 71 >gi|209883535|ref|YP_002287392.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209871731|gb|ACI91527.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 202 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R+ + +++A +S ++ E + SI AL + + + + Sbjct: 23 LGERIRFARQQRGMSLEQLATATGLTKSYLSKVERQLAVPSITTALKVSRVFGQTVGQLL 82 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R+ +GMS + G+ S LS E+ +P I A K+ +V + + + Sbjct: 25 ERIRFARQQRGMSLEQLATATGLTKSYLSKVERQLAVPSITTALKVSRVFGQTVGQLLG- 83 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKS 202 E + S+ + N+ + K D + Sbjct: 84 -ESLDESSLCIVRKNERHRFLKNDTHN 109 >gi|167771894|ref|ZP_02443947.1| hypothetical protein ANACOL_03267 [Anaerotruncus colihominis DSM 17241] gi|167665692|gb|EDS09822.1| hypothetical protein ANACOL_03267 [Anaerotruncus colihominis DSM 17241] Length = 188 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 26/78 (33%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G IK RK N + +E+A S ++ EN S+ + ++ + Sbjct: 3 QLGMNIKAERKKQNISLQELASWVQVSTSFLSQIENEKNEPSLTTLKRISTCLGVTVSKL 62 Query: 91 YDGEVIDRRYEDVTNKKR 108 + R + Sbjct: 63 LGEDESVRLMMIKKESRH 80 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +K+ RK + +S E + + S LS E + P + ++I + Sbjct: 1 MSQLGMNIKAERKKQNISLQELASWVQVSTSFLSQIENEKNEPSLTTLKRISTCLGVTVS 60 Query: 171 WIYFGDEVIVPKSIKR 186 + DE + IK+ Sbjct: 61 KLLGEDESVRLMMIKK 76 >gi|157151530|ref|YP_001449711.1| Cro/CI family transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157076324|gb|ABV11007.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii str. Challis substr. CH1] Length = 71 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LKS R+ +GM+Q E + +G+ T+ + E R P ++ A KI +V ++ ++ E Sbjct: 12 LKSTRESRGMTQQELAERIGVRRETILHLENNRYNPSLEMALKIARVFDLKIEDLFELKE 71 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R++ TQ+E+A + EN + S+ AL + +++ + +++ + Sbjct: 12 LKSTRESRGMTQQELAERIGVRRETILHLENNRYNPSLEMALKIARVFDLKIEDLFELKE 71 >gi|125717610|ref|YP_001034743.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497527|gb|ABN44193.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 70 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+K++R + Q E+A A ++L E G + SI AL + + + Sbjct: 6 NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFN 56 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R G++Q E KL G+ T+S E+G P I A KI + ++++ Sbjct: 1 MMQLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVE 60 Query: 171 WIY 173 ++ Sbjct: 61 NVF 63 >gi|89055867|ref|YP_511318.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88865416|gb|ABD56293.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 469 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 29/91 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +++ IR TQK+ A +N EN S + L ++ + + Sbjct: 8 VGAKLRSIRTGVGLTQKDFAAKLGISLPYLNQMENNNRPLSTAVLMGLAQDFGVDVTELS 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 + + + L +R Sbjct: 68 ASDADRIVSDMREALADPLFAEVAPALADLR 98 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GA+L+SIR G++Q +F LG+ L+ E + Q + Sbjct: 6 LYVGAKLRSIRTGVGLTQKDFAAKLGISLPYLNQMENNNRPLSTAVLMGLAQDFGVDVTE 65 Query: 172 I 172 + Sbjct: 66 L 66 >gi|82702660|ref|YP_412226.1| XRE family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82410725|gb|ABB74834.1| transcriptional regulator, XRE family [Nitrosospira multiformis ATCC 25196] Length = 189 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 D I ++ R+ ++Q E +L+G+ + +E G T P K KI +V K Sbjct: 1 MYYDGMDIARIIREGREKLKLNQSELAELVGVSPQAVQQWESGATQPRGKRLNKIAEVLK 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKGNQSS 193 ++FG + VP + A Q Sbjct: 61 LPPAMMHFGMSLEVPAAPDAAVSRQPE 87 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 D+ I++ R+ Q E+A AV +E+G + + ++ Sbjct: 7 DIARIIREGREKLKLNQSELAELVGVSPQAVQQWESGATQPRGKRLNKIAEVLKLP 62 >gi|72163177|ref|YP_290834.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71916909|gb|AAZ56811.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 401 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS-IRYALYLRNEYEI 85 +Y K +G +I R+ +Q+E A N+ E+ V+ E G+ + + ++ Sbjct: 4 EYQKALGRKIAQYRRRRGLSQREFAALINRSEAWVSQVERGVRKVDRMSVLAAVAEVLDV 63 Query: 86 SFDWI 90 + Sbjct: 64 PVAEL 68 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE-IKPARKIKQVTKKHL 169 A+G ++ R+ +G+SQ EF L+ + +S E+G + + + +V + Sbjct: 6 QKALGRKIAQYRRRRGLSQREFAALINRSEAWVSQVERGVRKVDRMSVLAAVAEVLDVPV 65 Query: 170 DWI 172 + Sbjct: 66 AEL 68 >gi|327334753|gb|EGE76464.1| putative DNA-binding protein [Propionibacterium acnes HL097PA1] Length = 369 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 7/142 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +++G RIK R TQ+ +A A++ NG ++ Sbjct: 1 MSEDMREIGERIKS-RMPEGMTQQSLAEAMEMTPDALSRMLNGKRGITMTELGKAAEVLG 59 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 S W+ G Y + + + R+ + + + Sbjct: 60 ASAHWLVTGHKDP--YAMRFAARHTYDFDTHRHINEGREKDREVLDHIAE---VYRAAHG 114 Query: 145 NYEQGRTIPEIKPARKIKQVTK 166 + + ++ K A+++++ Sbjct: 115 SL-RASSVVLPKTAKQMREALG 135 Score = 43.4 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG R+KS R +GM+Q + + M LS G+ + K +V Sbjct: 4 DMREIGERIKS-RMPEGMTQQSLAEAMEMTPDALSRMLNGKRGITMTELGKAAEVLGASA 62 Query: 170 DWIYFG 175 W+ G Sbjct: 63 HWLVTG 68 >gi|313898821|ref|ZP_07832355.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956403|gb|EFR38037.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 73 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + Y+ +++ R K MSQ E L+G+ T+ E+ R P + A I +V + Sbjct: 5 NKYSFDSKIHVYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVTI 64 Query: 170 DWIYFGDEV 178 + ++ E Sbjct: 65 EDLFDFRED 73 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++I R +Q+E+A + E + S+ A + ++++ + ++D Sbjct: 11 SKIHVYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVTIEDLFD 69 >gi|295688227|ref|YP_003591920.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430130|gb|ADG09302.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 144 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 30/87 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ RK +Q+++A V +E G S + ++ + + Sbjct: 17 VGGRVRMRRKLMGVSQEQLADSLGLTFQQVQKYERGANRVSASKLYDIAKTLQVPVSFFF 76 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 +G ++ + + L Sbjct: 77 EGLADPMSGAEIDATAQHAEKVVQEFL 103 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ RK G+SQ + LG+ + YE+G I + + + + + G Sbjct: 21 VRMRRKLMGVSQEQLADSLGLTFQQVQKYERGANRVSASKLYDIAKTLQVPVSFFFEG 78 >gi|302552372|ref|ZP_07304714.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302469990|gb|EFL33083.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 195 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ R+ + +++A A ++ E G+ S + IS + + Sbjct: 8 NLGDYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 Query: 91 Y 91 Y Sbjct: 68 Y 68 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ R++ +S + G+ N LS E+G P + +++ + + + +Y Sbjct: 12 YLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETLY 68 >gi|224536328|ref|ZP_03676867.1| hypothetical protein BACCELL_01200 [Bacteroides cellulosilyticus DSM 14838] gi|224522025|gb|EEF91130.1| hypothetical protein BACCELL_01200 [Bacteroides cellulosilyticus DSM 14838] Length = 184 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K + R++ +R T +++A + L E G S+ + Y Sbjct: 1 MDEQIKQIAERLRGLRDVLELTAEDIARECDISPYDYRLAETGDFDISVSMLQKIARRYG 60 Query: 85 ISFDWIYDGEVIDRRYE 101 +S D + GE Sbjct: 61 VSLDALMFGEEPKMSSY 77 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 30/86 (34%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL+ +R ++ + + + E G + +KI + LD + FG Sbjct: 10 ERLRGLRDVLELTAEDIARECDISPYDYRLAETGDFDISVSMLQKIARRYGVSLDALMFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + G S + K K Sbjct: 70 EEPKMSSYFLTRAGKGVSIERTKAYK 95 >gi|169350310|ref|ZP_02867248.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552] gi|169293093|gb|EDS75226.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552] Length = 185 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +IK +R+AN T +E+A + + ++ E + S SI + + Sbjct: 10 DIGGKIKMLRQANGLTLEELANRSELTKGFLSQLERDLTSPSITTLEDILEALGTNLQEF 69 Query: 91 YDGEVIDRRYEDVTNK--KRLDPYAIGARL 118 + + ++ + D Y I + Sbjct: 70 FSEKPAEQIVFKKDDFFVNEQDDYIISYII 99 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG ++K +R+ G++ E + LS E+ T P I I + +L Sbjct: 7 DIMDIGGKIKMLRQANGLTLEELANRSELTKGFLSQLERDLTSPSITTLEDILEALGTNL 66 Query: 170 DWIYFGD 176 + Sbjct: 67 QEFFSEK 73 >gi|167913747|ref|ZP_02500838.1| putative transcriptional regulator, XRE family protein [Burkholderia pseudomallei 112] Length = 86 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + VG ++ +R+ +Q+ +A A+ + V+L E G S S+R + E++ Sbjct: 4 EPEQAVGEVLRSLRRRKGLSQEALAHAADMERNYVSLIELGRHSPSVRVIWKICAALEVT 63 Query: 87 FDWIY 91 Sbjct: 64 PSAFL 68 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 33/79 (41%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G L+S+R+ KG+SQ M + +S E GR P ++ KI + Sbjct: 8 AVGEVLRSLRRRKGLSQEALAHAADMERNYVSLIELGRHSPSVRVIWKICAALEVTPSAF 67 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 E + + KR + Sbjct: 68 LAAAEARLGEHAKRTSASD 86 >gi|27366450|ref|NP_761978.1| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|27362651|gb|AAO11505.1| Putative transcriptional regulator [Vibrio vulnificus CMCP6] Length = 105 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS----NYEQGRTIPEIKPARKIKQV 164 ++ I RLK RK ++Q G ++GM S+ S +YE+GR P+I RK+ Sbjct: 1 MEDNPIPMRLKKARKHAKITQKNLGIMIGMDESSASGRMNHYEKGRHTPDISTLRKMADA 60 Query: 165 TKKHLDWIYFGDEVIVP-----KSIKRAKGNQSSK 194 L++ + DE + AK NQ K Sbjct: 61 LGVPLNYFFCEDEASAELATAISRLSEAKRNQVLK 95 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K RK TQK + I ES+ +N +E G + I + + + ++ Sbjct: 9 RLKKARKHAKITQKNLGIMIGMDESSASGRMNHYEKGRHTPDISTLRKMADALGVPLNYF 68 Query: 91 YDGEVID 97 + + Sbjct: 69 FCEDEAS 75 >gi|59801268|ref|YP_207980.1| hypothetical protein NGO0867 [Neisseria gonorrhoeae FA 1090] gi|194098501|ref|YP_002001563.1| hypothetical protein NGK_0938 [Neisseria gonorrhoeae NCCP11945] gi|254493679|ref|ZP_05106850.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268594735|ref|ZP_06128902.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268596937|ref|ZP_06131104.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268598888|ref|ZP_06133055.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601243|ref|ZP_06135410.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603564|ref|ZP_06137731.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682044|ref|ZP_06148906.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684254|ref|ZP_06151116.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686512|ref|ZP_06153374.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043928|ref|ZP_06569644.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|293399131|ref|ZP_06643296.1| hypothetical protein NGNG_00329 [Neisseria gonorrhoeae F62] gi|59718163|gb|AAW89568.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193933791|gb|ACF29615.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226512719|gb|EEH62064.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548124|gb|EEZ43542.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268550725|gb|EEZ45744.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268583019|gb|EEZ47695.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585374|gb|EEZ50050.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268587695|gb|EEZ52371.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622328|gb|EEZ54728.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624538|gb|EEZ56938.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268626796|gb|EEZ59196.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012391|gb|EFE04380.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|291610545|gb|EFF39655.1| hypothetical protein NGNG_00329 [Neisseria gonorrhoeae F62] Length = 129 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 28/82 (34%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V +I+ +R+ N TQ+EMA + + E G ++ + + I + Sbjct: 2 EVHDKIRTLREVNQWTQEEMAEKLEMSVNGYSKIERGKSGINLDKLRQIAQIFNIDVVEL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPY 112 + + N Sbjct: 62 LAEQNRSFFFSIGDNTNNHHNI 83 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +++++R+ +Q E + L M + S E+G++ + R+I Q+ + Sbjct: 1 MEVHDKIRTLREVNQWTQEEMAEKLEMSVNGYSKIERGKSGINLDKLRQIAQIFNIDVVE 60 Query: 172 IY 173 + Sbjct: 61 LL 62 >gi|24379248|ref|NP_721203.1| hypothetical protein SMU.790 [Streptococcus mutans UA159] gi|24377163|gb|AAN58509.1|AE014920_7 conserved hypothetical protein [Streptococcus mutans UA159] Length = 79 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G I +RK TQ E+A + AV+ +E + I L +E+S D Sbjct: 4 QTLGMIISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLSFPDINSIPKLAEIFEVSVDD 63 Query: 90 IYDGEVIDRRYEDVTN 105 + + + Sbjct: 64 LMQVKTNTKETIGKNK 79 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 37/65 (56%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G + S+RK+KGM+Q+E + + + + +S +E+ + P+I K+ ++ + Sbjct: 1 MRKQTLGMIISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLSFPDINSIPKLAEIFEVS 60 Query: 169 LDWIY 173 +D + Sbjct: 61 VDDLM 65 >gi|158314387|ref|YP_001506895.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158109792|gb|ABW11989.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 176 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANN--KTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 + T + R Y +VG R++ IR Q E++ +A+ +E G SI Sbjct: 1 MSTTSDNRSYAHEVGARLRAIRTQQGRSLQQVEISSDGRWKVAALGSYERGDRMISIERL 60 Query: 77 LYLRNEYEISFDWIYDGEVIDRRYED 102 L + Y + + G + Sbjct: 61 AALADFYGVPVHELLAGGRPNPLPPQ 86 Score = 41.1 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKG--MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPA 158 T+ R + +GARL++IR +G + Q+E + L +YE+G + I+ Sbjct: 1 MSTTSDNRSYAHEVGARLRAIRTQQGRSLQQVEISSDGRWKVAALGSYERGDRMISIERL 60 Query: 159 RKIKQVTKKHLDWIYFG 175 + + + G Sbjct: 61 AALADFYGVPVHELLAG 77 >gi|313904693|ref|ZP_07838067.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470486|gb|EFR65814.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 106 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 4/90 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I RK TQ+E+A +SA+ +E + ++S D + Sbjct: 7 LGQFISTRRKHMRLTQEELADQVGVSKSAIAKWETDGGLPDRDNLRRISEVMDVSVDEL- 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + +K D +K++ Sbjct: 66 ---HRIIEQPETNHKDFFDVNITLEVIKAL 92 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + + RK ++Q E +G+ S ++ +E +P+ R+I +V +D + Sbjct: 9 QFISTRRKHMRLTQEELADQVGVSKSAIAKWETDGGLPDRDNLRRISEVMDVSVDEL 65 >gi|300715975|ref|YP_003740778.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299061811|emb|CAX58927.1| predicted transcriptional regulator [Erwinia billingiae Eb661] Length = 188 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + R+ D+R + + +A ++++ E G S + L Y ++ Sbjct: 9 RRLAQRLADLRLEKGWSLETLAELTGISRASLSRIERGETSPTAALMNRLCIAYGLTMSR 68 Query: 90 IY 91 + Sbjct: 69 LL 70 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL +R +KG S +L G+ ++LS E+G T P ++ + + Sbjct: 13 QRLADLRLEKGWSLETLAELTGISRASLSRIERGETSPTAALMNRLCIAYGLTMSRLLSE 72 Query: 176 DEVIVPKSIK 185 E P+ ++ Sbjct: 73 VEEQGPQLLR 82 >gi|270262720|ref|ZP_06190991.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043404|gb|EFA16497.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 185 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR +Q+ +A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSAFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 + V + L Sbjct: 69 EPEAADEPKVVIEAEDL 85 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR G+SQ +L G+ +S +S EQ + P I +K+ +V L Sbjct: 6 LAPGKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSA 65 Query: 172 IYFGDEVI-VPKSIKRAK 188 + E PK + A+ Sbjct: 66 FFAEPEAADEPKVVIEAE 83 >gi|227502499|ref|ZP_03932548.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|306835073|ref|ZP_07468116.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|227076772|gb|EEI14735.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|304569054|gb|EFM44576.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length = 469 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 38/111 (34%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R+ + +Q +A S VN E+ + ++ L + + + + Sbjct: 6 VGSRLRQLRRERDLSQASLAGTLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFFS 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNST 142 + E + + L+ + + L+ + Sbjct: 66 RDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDVHRRY 116 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +R+++ +SQ LG+ S ++ E + +I +V Sbjct: 1 MSKTYVGSRLRQLRRERDLSQASLAGTLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + D+ + I+ Sbjct: 61 ATFFSRDDDSRLLAEIQD 78 >gi|225856824|ref|YP_002738335.1| transcriptional regulator [Streptococcus pneumoniae P1031] gi|225726261|gb|ACO22113.1| transcriptional regulator [Streptococcus pneumoniae P1031] Length = 227 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R+ +G+SQ + LG+ ++ N+E G+T P K+ ++ + Sbjct: 1 MFSPTKLKEKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLSKLSEIFNVDPRY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 + + IV +K K NQ + Sbjct: 61 -FESEFEIVETYLKLTKKNQKA 81 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 7/56 (12%), Positives = 23/56 (41%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++K+ R++ +Q ++A ++ +E+G + L + + + Sbjct: 6 KLKEKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLSKLSEIFNVDPRYF 61 >gi|197104753|ref|YP_002130130.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] gi|196478173|gb|ACG77701.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] Length = 267 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K VG I+ R+ +Q ++A+ A ++ E G S L L ++ EI Sbjct: 6 KPVGEHIRAWRQRRRMSQLDLALEAEISTRHLSFLETGRAQPSREMVLRLADQLEIPL 63 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +++ R+ + MSQ++ + LS E GR P + ++ + L Sbjct: 10 EHIRAWRQRRRMSQLDLALEAEISTRHLSFLETGRAQPSREMVLRLADQLEIPL 63 >gi|168210271|ref|ZP_02635896.1| cI2009 [Clostridium perfringens B str. ATCC 3626] gi|170711658|gb|EDT23840.1| cI2009 [Clostridium perfringens B str. ATCC 3626] Length = 78 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + +++GT IK R + K+++ + +N E G+ S L Sbjct: 4 ILEEYLEETIQNIGTNIKRRRLIKGWSLKQLSKKSGVGIKTINDIELGINKPSKNTLYKL 63 Query: 80 RNEYEISFDWIYDGE 94 + ++ D + G+ Sbjct: 64 SRGFGVTIDKLVYGK 78 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K R KG S + K G+ T+++ E G P K+ + +D + +G Sbjct: 19 NIKRRRLIKGWSLKQLSKKSGVGIKTINDIELGINKPSKNTLYKLSRGFGVTIDKLVYGK 78 >gi|95928831|ref|ZP_01311577.1| transcriptional regulator of molybdate metabolism, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95135176|gb|EAT16829.1| transcriptional regulator of molybdate metabolism, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 372 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 27/65 (41%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++D R+ +QKE+A A+ E G + +L L + + ++ + Sbjct: 12 VRDYRQKQGWSQKELAERIGIKRQAIYDIETGRYLPNTGISLRLARLFGCRVEDLFVDDT 71 Query: 96 IDRRY 100 +++ Sbjct: 72 PEQQQ 76 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 35/77 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +I ++ R+ +G SQ E + +G+ + + E GR +P + ++ ++ ++ + Sbjct: 7 SIKCMVRDYRQKQGWSQKELAERIGIKRQAIYDIETGRYLPNTGISLRLARLFGCRVEDL 66 Query: 173 YFGDEVIVPKSIKRAKG 189 + D + + G Sbjct: 67 FVDDTPEQQQGVDLVNG 83 >gi|296327851|ref|ZP_06870387.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154985|gb|EFG95766.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 209 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V IK IR+ N + ++A ++ +S + E G + ++ + N ++SF+ + Sbjct: 35 VSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTLI 94 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + + + + Sbjct: 95 AQPKLPYKVTKLAEIEPI 112 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K IR++K +S + KL + S L+ E+G P + KI + + + Sbjct: 37 ENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTLI 94 >gi|288962615|ref|YP_003452909.1| transcriptional regulator [Azospirillum sp. B510] gi|288914881|dbj|BAI76365.1| transcriptional regulator [Azospirillum sp. B510] Length = 118 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 31/84 (36%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + +G R++ +R++ +Q+++A ++ V+ E G ++ L ++ Sbjct: 3 DDLKRRIGKRLRALRESRALSQEDVAAAIDRSVETVSNIERGRVLAALETLDRLSRRLDV 62 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRL 109 +D RL Sbjct: 63 PLVDFFDDGEAVVSPARAATDMRL 86 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL-DWIYF 174 RL+++R+ + +SQ + + T+SN E+GR + ++ ++ + L D+ Sbjct: 11 KRLRALRESRALSQEDVAAAIDRSVETVSNIERGRVLAALETLDRLSRRLDVPLVDFFDD 70 Query: 175 GDEVIVP 181 G+ V+ P Sbjct: 71 GEAVVSP 77 >gi|238793272|ref|ZP_04636899.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] gi|238727440|gb|EEQ18967.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] Length = 193 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I+ R+ T E+A A +S ++ E G + S+ L ++ + Sbjct: 23 IRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRLI 78 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A ++ R+ G++ E K G+ STLS E G P ++ + + + Sbjct: 21 ASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRLI 78 >gi|238761245|ref|ZP_04622222.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] gi|238761498|ref|ZP_04622474.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700472|gb|EEP93213.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700725|gb|EEP93465.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] Length = 193 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I+ R+ T E+A A +S ++ E G + S+ L ++ + Sbjct: 23 IRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRLI 78 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A ++ R+ G++ E K G+ STLS E G P ++ + + + Sbjct: 21 ASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRLI 78 >gi|258653119|ref|YP_003202275.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556344|gb|ACV79286.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 225 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 34/79 (43%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 + P + +G ++K IR+A +T +E+A + + ++ E + S S+ L Sbjct: 4 AVATEPAPNEETARIGAKLKAIRRAQRRTLEEVAEASGLTKGFLSKIERDLASASVAALL 63 Query: 78 YLRNEYEISFDWIYDGEVI 96 + I +++ + Sbjct: 64 RICATLGIPLSSLFESDST 82 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A+LK+IR+ + + E + G+ LS E+ + +I L ++ Sbjct: 20 AKLKAIRRAQRRTLEEVAEASGLTKGFLSKIERDLASASVAALLRICATLGIPLSSLFES 79 Query: 176 D 176 D Sbjct: 80 D 80 >gi|257051844|ref|YP_003129677.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256690607|gb|ACV10944.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 70 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R + TQ E+A +N E S+ A L ++ + + I++ + Sbjct: 5 LKVWRAKEDITQGELADAVGVSRQTINALERERYDPSLELAFKLARHFDCAIEDIFEYDP 64 Query: 96 ID 97 D Sbjct: 65 AD 66 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R + ++Q E +G+ T++ E+ R P ++ A K+ + ++ I+ Sbjct: 1 MENDLKVWRAKEDITQGELADAVGVSRQTINALERERYDPSLELAFKLARHFDCAIEDIF 60 Query: 174 FGD 176 D Sbjct: 61 EYD 63 >gi|227499929|ref|ZP_03930022.1| hypothetical protein HMPREF0077_0657 [Anaerococcus tetradius ATCC 35098] gi|227218038|gb|EEI83311.1| hypothetical protein HMPREF0077_0657 [Anaerococcus tetradius ATCC 35098] Length = 308 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 1/96 (1%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYL 79 I ++ K+ G ++ +IR+ Q ++A ++ + + E G + S+ + L Sbjct: 13 IEAKMTDERKEFGKKLIEIREVKGLRQADVAEISDISQRTIGRLERGEIFNPSVDSLIEL 72 Query: 80 RNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 Y I +Y + Y K LD A+ Sbjct: 73 SKIYNIDILTLYKKYIYGSFYILEEIKNLLDINAMF 108 Score = 47.6 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 99 RYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKP 157 + + K + G +L IR+ KG+ Q + ++ + T+ E+G P + Sbjct: 9 NHIYIEAKMTDERKEFGKKLIEIREVKGLRQADVAEISDISQRTIGRLERGEIFNPSVDS 68 Query: 158 ARKIKQVTKKHLDWIYF 174 ++ ++ + +Y Sbjct: 69 LIELSKIYNIDILTLYK 85 >gi|190570687|ref|YP_001975045.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356959|emb|CAQ54347.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 305 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 37/102 (36%), Gaps = 1/102 (0%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ + +G +IK+ R TQK++A + ++ +E G + + + Sbjct: 152 VEEKVGSIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIA 211 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 I+ + + + ++ Y + +R Sbjct: 212 ETLSINIMDLLELTEDADDKVENELPNLIEEYKEIES-QELR 252 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 21/62 (33%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ R TQK++A V +E G+ SI + + + Sbjct: 9 QIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVDIIDL 68 Query: 91 YD 92 Sbjct: 69 IP 70 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y I +++S R +G +Q + +G+ + YE+G I+ I +V + Sbjct: 8 YQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVDIID 67 Query: 172 IY 173 + Sbjct: 68 LI 69 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 IS D I + E V K IG ++K R +G +Q + + + + Sbjct: 134 GISVD-IVAKTIGLSVDECVEEKVGSIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEI 192 Query: 144 SNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 SNYEQGR ++ I + ++ + E K Sbjct: 193 SNYEQGRVAIPLEKLYAIAETLSINIMDLLELTEDADDKVENE 235 >gi|15901276|ref|NP_345880.1| transcriptional repressor, putative [Streptococcus pneumoniae TIGR4] gi|15903322|ref|NP_358872.1| transcriptional repressor, putative [Streptococcus pneumoniae R6] gi|298502624|ref|YP_003724564.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|14972912|gb|AAK75520.1| putative transcriptional repressor [Streptococcus pneumoniae TIGR4] gi|15458920|gb|AAL00083.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|298238219|gb|ADI69350.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] Length = 79 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R + TQ ++A + L E G + S+ + + D ++ E Sbjct: 16 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 75 Query: 95 VIDR 98 ++ Sbjct: 76 EDEK 79 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A +LK R ++ ++Q + + +G+ T+ E G+ P + + I + K LD + Sbjct: 12 AKNLKLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQL 71 Query: 173 YFGDEV 178 ++ +E Sbjct: 72 FWEEED 77 >gi|21282054|ref|NP_645142.1| hypothetical protein MW0325 [Staphylococcus aureus subsp. aureus MW2] gi|49485229|ref|YP_042450.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297209138|ref|ZP_06925537.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911139|ref|ZP_07128588.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21203490|dbj|BAB94190.1| MW0325 [Staphylococcus aureus subsp. aureus MW2] gi|49243672|emb|CAG42096.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296886071|gb|EFH25005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887318|gb|EFK82514.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 36/67 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G++Q + KL G+ T+S E+ +P + A KI ++ + ++ ++ Sbjct: 1 MRNRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNFMPSVLTAIKIARIFNETVETVF 60 Query: 174 FGDEVIV 180 +E V Sbjct: 61 IIEEDEV 67 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q ++A A ++L E S+ A+ + + + + ++ Sbjct: 3 NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNFMPSVLTAIKIARIFNETVETVFII 62 Query: 94 EVID 97 E + Sbjct: 63 EEDE 66 >gi|322391527|ref|ZP_08064996.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145610|gb|EFX41002.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 64 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K+ RK K+Q E+A +N+ EN + ++ L L + + ++ Sbjct: 2 NRVKEFRKELGKSQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNNLF 59 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K RK+ G SQ+E K +G+ T++ E + P ++ + + + L+ +++ Sbjct: 1 MNRVKEFRKELGKSQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNNLFW 60 Query: 175 GDE 177 D+ Sbjct: 61 EDD 63 >gi|302554055|ref|ZP_07306397.1| helix-turn-helix domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302471673|gb|EFL34766.1| helix-turn-helix domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 82 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 29/74 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + V R+ +R +++ +A + E G + S+ AL + + + + Sbjct: 3 EQVHNRLAMVRAERKVSRQSLAEAVGAHYQTIGYIERGQYNPSLDLALKISKFFGLPVEA 62 Query: 90 IYDGEVIDRRYEDV 103 ++ E ++V Sbjct: 63 LFSLEPFRPLTDEV 76 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R ++ +S+ + +G T+ E+G+ P + A KI + ++ ++ Sbjct: 6 HNRLAMVRAERKVSRQSLAEAVGAHYQTIGYIERGQYNPSLDLALKISKFFGLPVEALFS 65 Query: 175 GD 176 + Sbjct: 66 LE 67 >gi|261820696|ref|YP_003258802.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604709|gb|ACX87195.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 96 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK R +Q ++A A S +++ EN ++ + ++ I Sbjct: 2 NIGQAIKLCRTRRGISQTDLANKAECSVSYLSMLENNKRDPTLSTLTKIATALKLPVSII 61 Query: 91 YD 92 + Sbjct: 62 FF 63 Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K R +G+SQ + S LS E + P + KI K + Sbjct: 1 MNIGQAIKLCRTRRGISQTDLANKAECSVSYLSMLENNKRDPTLSTLTKIATALKLPVSI 60 Query: 172 IYF 174 I+F Sbjct: 61 IFF 63 >gi|229100141|ref|ZP_04231043.1| transcriptional regulator [Bacillus cereus Rock3-29] gi|229106965|ref|ZP_04237065.1| transcriptional regulator [Bacillus cereus Rock3-28] gi|228676520|gb|EEL31266.1| transcriptional regulator [Bacillus cereus Rock3-28] gi|228683276|gb|EEL37252.1| transcriptional regulator [Bacillus cereus Rock3-29] Length = 171 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 MSQ + + + + ++SN+E R P+I + + LD + GD I+ + +++ Sbjct: 1 MSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDLVKGDVKIMKEELQK 60 Query: 187 A 187 + Sbjct: 61 S 61 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 +Q+++A + +++ +EN I L + + +S D + G+V + E Sbjct: 1 MSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDLVKGDVKIMKEELQK 60 Query: 105 N 105 + Sbjct: 61 S 61 >gi|223982789|ref|ZP_03633015.1| hypothetical protein HOLDEFILI_00289 [Holdemania filiformis DSM 12042] gi|223965236|gb|EEF69522.1| hypothetical protein HOLDEFILI_00289 [Holdemania filiformis DSM 12042] Length = 87 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RI+ +RK TQ+++A ++ EN + + ++S D + Sbjct: 9 LGRRIRILRKYRKLTQEQLAEVVGLSIQHLSNAENARTKLGFPKIKSIADTLDVSLDEL 67 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 ++ +G R++ +RK + ++Q + +++G+ LSN E RT + I Sbjct: 1 MNDVNYVLLGRRIRILRKYRKLTQEQLAEVVGLSIQHLSNAENARTKLGFPKIKSIADTL 60 Query: 166 KKHLDWI 172 LD + Sbjct: 61 DVSLDEL 67 >gi|254391929|ref|ZP_05007122.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294811944|ref|ZP_06770587.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197705609|gb|EDY51421.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294324543|gb|EFG06186.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 287 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + G R++ +R TQ+E+A + ++ E G + R+A Sbjct: 21 EKSPRAAFGARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPTPRFAKK 74 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 + + ++ A GARL+++R ++G +Q E + +G + +S E GR P + A+ Sbjct: 14 HRKELDPEKSPRAAFGARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPTPRFAK 73 Query: 160 KIKQVTKK 167 K + Sbjct: 74 KADRALGT 81 >gi|169334596|ref|ZP_02861789.1| hypothetical protein ANASTE_00999 [Anaerofustis stercorihominis DSM 17244] gi|169259313|gb|EDS73279.1| hypothetical protein ANASTE_00999 [Anaerofustis stercorihominis DSM 17244] Length = 117 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G ++K RK TQ+ +A + S ++ ENG S++ + + N IS Sbjct: 8 LGEKLKQQRKKQGITQETLAEYVDLSVSHLSHIENGSTKVSLQTIVNIANILNIS 62 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++D +G +LK RK +G++Q + + + S LS+ E G T ++ I + Sbjct: 1 MKIDYLMLGEKLKQQRKKQGITQETLAEYVDLSVSHLSHIENGSTKVSLQTIVNIANILN 60 Query: 167 KH 168 Sbjct: 61 IS 62 >gi|54295976|ref|YP_122288.1| hypothetical protein plpp0134 [Legionella pneumophila str. Paris] gi|53755808|emb|CAH17311.1| hypothetical protein plpp0134 [Legionella pneumophila str. Paris] Length = 191 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 9/97 (9%), Positives = 35/97 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ K + +K +R+ + + A+ ++ + E S +I + + ++ Sbjct: 1 MQEISKRIAKTLKSLRQERGWSLDKTALETGVSKAMLGQIEREESSPTISTLWKIASGFQ 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 SF + + + + +++ + Sbjct: 61 ASFSSFIEDSLDNSTNPVYRAGHAETLHPDDEKIRVL 97 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 2/86 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LKS+R+++G S + G+ + L E+ + P I KI + Sbjct: 10 KTLKSLRQERGWSLDKTALETGVSKAMLGQIEREESSPTISTLWKIASGFQASFSSFI-- 67 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 ++ + + + + D+K Sbjct: 68 EDSLDNSTNPVYRAGHAETLHPDDEK 93 >gi|319784783|ref|YP_004144259.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170671|gb|ADV14209.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 202 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R N + ++A A A++ E GM S ++ L +I + Sbjct: 19 VGRRVRALRLERNLSLADLAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSALI 78 Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 D E K +G R++++R ++ +S + G+ LS E+G + +K Sbjct: 2 DMLDETAGKPKDDADVRVGRRVRALRLERNLSLADLAAKAGVSIGALSQIERGMSSLRVK 61 Query: 157 PARKIKQVTKKHLDWIY 173 + + Sbjct: 62 VIWPLAAALDIEPSALI 78 >gi|291286694|ref|YP_003503510.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290883854|gb|ADD67554.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 105 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++ +G RI+++R++ N +Q+ +A AN + E G + S + + Sbjct: 1 MAKFIVKLGRRIREVRRSKNFSQETLAEKANISSKYLGEVERGESNVSAALLNDIASALN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 I + D +D A L+ I Sbjct: 61 IPIAELMDYGHVDDDRNLKVEIIDYVNRANAECLQKI 97 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 20/58 (34%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ +R+ K SQ + + + L E+G + I + + Sbjct: 10 RRIREVRRSKNFSQETLAEKANISSKYLGEVERGESNVSAALLNDIASALNIPIAELM 67 >gi|227499696|ref|ZP_03929799.1| XRE family transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227218293|gb|EEI83552.1| XRE family transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 233 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Query: 17 YTLIITPEIRQY----WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 Y I++ +I++ ++ +K RK N TQ+ +A N SA +E G Sbjct: 13 YYTIVSSKIQKKEVINMTNLTENLKYYRKLNGYTQETIAPKLNIKTSAYGSYEQGRNEPP 72 Query: 73 IRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPY 112 L + Y IS + GE + + ++ Y Sbjct: 73 YSKLKMLASIYGISISEL-TGEPEKKEPIQNKDYITINIY 111 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 33/100 (33%) Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 + + + K+ ++ + LK RK G +Q L + S +Y Sbjct: 5 IYYHFKWWYYTIVSSKIQKKEVINMTNLTENLKYYRKLNGYTQETIAPKLNIKTSAYGSY 64 Query: 147 EQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 EQGR P + + + + + E P K Sbjct: 65 EQGRNEPPYSKLKMLASIYGISISELTGEPEKKEPIQNKD 104 >gi|254474388|ref|ZP_05087774.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214028631|gb|EEB69466.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 462 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R + TQKE A +N EN S L L E+ + + Sbjct: 9 GAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELST 68 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G+ + + + +R Sbjct: 69 GDSERLVSDMREVMADPVFASDAPPMADLR 98 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ +R ++Q EF LG+ L+ E + Q + Sbjct: 6 LYAGAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTE 65 Query: 172 IYFGDEVIVPKSIKR 186 + GD + ++ Sbjct: 66 LSTGDSERLVSDMRE 80 >gi|209520107|ref|ZP_03268882.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209499480|gb|EDZ99560.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 70 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D G ++ +R+A + +Q+++A A S V E G SI A L + Sbjct: 6 RDFGAAVRSLREALSWSQEQLAEYAGLNRSYVGEIERGSAIASIVTADKLARALNVPIGT 65 Query: 90 IYD 92 + Sbjct: 66 LLC 68 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 GA ++S+R+ SQ + + G+ S + E+G I I A K+ + + + Sbjct: 8 FGAAVRSLREALSWSQEQLAEYAGLNRSYVGEIERGSAIASIVTADKLARALNVPIGTLL 67 >gi|190894495|ref|YP_001984788.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700156|gb|ACE94238.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 152 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R+ +Q+ +A V +E G+ + S + + Sbjct: 13 VGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIAEVLHTSPSFFF 72 Query: 92 -DGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 G+ + + R DP A + K Sbjct: 73 EQGDSEPVAAPGLGGRDRTDPVAEFLQTKE 102 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +V +D Y AR+++ R+ GMSQ + +G+ + YE+G ++ Sbjct: 1 MNVKTPNAIDSYVG-ARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQR 59 Query: 161 IKQVTKKHLDWIY 173 I +V + + Sbjct: 60 IAEVLHTSPSFFF 72 >gi|167587597|ref|ZP_02379985.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ubonensis Bu] Length = 223 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R+ + KT E+A A ++ E + SI + + + + Sbjct: 8 IGQRIRRLRRESKKTLLEIATEAKLSVGFLSQVERNLTGISISSLVNVAKALNVPLGALI 67 Query: 92 DGEVIDRRYEDVTNKK 107 D + N++ Sbjct: 68 DQPRQPQPDSHQGNRE 83 Score = 43.0 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 3/84 (3%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG R++ +R++ + +E + LS E+ T I + + L Sbjct: 4 DIMRIGQRIRRLRRESKKTLLEIATEAKLSVGFLSQVERNLTGISISSLVNVAKALNVPL 63 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSS 193 + D+ P+ +GN+ S Sbjct: 64 GALI--DQPRQPQP-DSHQGNRES 84 >gi|162448725|ref|YP_001611092.1| Cro/CI family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159307|emb|CAN90612.1| transcriptional regulator, Cro/CI family [Sorangium cellulosum 'So ce 56'] Length = 92 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + ++ +R+ TQ+++A A + E G S S+ + L N ++S + Sbjct: 13 IAANLRRLRQQRGITQEQLAEAAGIELRTMQAIEVGRQSMSLGTLVRLANALDVSPGVLL 72 Query: 92 D 92 Sbjct: 73 R 73 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I A L+ +R+ +G++Q + + G+ T+ E GR + ++ + Sbjct: 12 YIAANLRRLRQQRGITQEQLAEAAGIELRTMQAIEVGRQSMSLGTLVRLANALDVSPGVL 71 Query: 173 Y 173 Sbjct: 72 L 72 >gi|149915490|ref|ZP_01904017.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] gi|149810779|gb|EDM70620.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] Length = 215 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 25/64 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G ++ +RKA T ++A + ++ E + SI + + + Sbjct: 35 QTLGADLRALRKARGLTLADLADSLGRSVGWLSQVERDLSEPSISDLRQIAEQLGVPMSL 94 Query: 90 IYDG 93 ++ Sbjct: 95 LFGH 98 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A L+++RK +G++ + LG LS E+ + P I R+I + + + FG Sbjct: 39 ADLRALRKARGLTLADLADSLGRSVGWLSQVERDLSEPSISDLRQIAEQLGVPMS-LLFG 97 >gi|153853580|ref|ZP_01994960.1| hypothetical protein DORLON_00950 [Dorea longicatena DSM 13814] gi|149753735|gb|EDM63666.1| hypothetical protein DORLON_00950 [Dorea longicatena DSM 13814] Length = 113 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG ++K +R TQ+++A N V+ EN ++R LY +S D I Sbjct: 8 KVGLKMKQLRSERGITQEQVAKDLNCTVPFVSNVENNRAKLNLRVLLYYSKLCNVSVDTI 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPY----------AIGARLKSIRKDK 125 D D D + D +K +R + Sbjct: 68 LDA-GRDIPPLDEKEHQLNDEMLNVFRGFSVTEKEKIIKMLRIWQ 111 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +D +G ++K +R ++G++Q + K L +SN E R ++ ++ Sbjct: 1 MNEVDFSKVGLKMKQLRSERGITQEQVAKDLNCTVPFVSNVENNRAKLNLRVLLYYSKLC 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQS 192 +D I I P K + N Sbjct: 61 NVSVDTILDAGRDIPPLDEKEHQLNDE 87 >gi|149277999|ref|ZP_01884138.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39] gi|149231197|gb|EDM36577.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39] Length = 108 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ +R+ N +Q E+A N A + E G+ +I + + +++S I Sbjct: 4 IGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLEQIAHLFQVSTMDII 63 Query: 92 DGEVIDRRYEDVTNKKRL 109 E + + + L Sbjct: 64 SKEGENPQSLNFEEINAL 81 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG ++ +R+ G SQ E K L + S E G T I +I + + Sbjct: 1 MNVIGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLEQIAHLFQVSTM 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKK 195 I E P+S+ + N +K Sbjct: 61 DIIS-KEGENPQSLNFEEINALKQK 84 >gi|159897816|ref|YP_001544063.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890855|gb|ABX03935.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 268 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G+ I+ R+ + +Q ++A AN ++ E G S L+L E+ Sbjct: 6 IGSLIRTWRQRRHLSQLDLASDANISTKHLSFLETGRSLPSRDMLLHLAEHLEVPL 61 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + AIG+ +++ R+ + +SQ++ + LS E GR++P + + + Sbjct: 1 MKQAAIGSLIRTWRQRRHLSQLDLASDANISTKHLSFLETGRSLPSRDMLLHLAEHLEVP 60 Query: 169 L 169 L Sbjct: 61 L 61 >gi|326789828|ref|YP_004307649.1| hypothetical protein Clole_0718 [Clostridium lentocellum DSM 5427] gi|326540592|gb|ADZ82451.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 122 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK +RKA N TQ+ ++A++ ENG + + + + NE+ ++ +W+ G Sbjct: 3 ERIKSVRKALNLTQENFGEKLGVRKTAISKLENGENNLTEQMQKLICNEFNVNEEWLRTG 62 Query: 94 EVIDRRYED 102 D Sbjct: 63 NGEMFNQMD 71 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+KS+RK ++Q FG+ LG+ + +S E G + + I + +W+ Sbjct: 1 MKERIKSVRKALNLTQENFGEKLGVRKTAISKLENGENNLTEQMQKLICNEFNVNEEWLR 60 Query: 174 FGDEVIVPKSIKRAK 188 G+ + + + + Sbjct: 61 TGNGEMFNQMDRDEE 75 >gi|266620403|ref|ZP_06113338.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288867980|gb|EFD00279.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 115 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWIYD 92 RI +R+ Q + + V+ E+ S + + + ++ D++ + Sbjct: 4 NRIYSLRRQKKIPQALLGDLLGVSQQTVSKIESQPIPDISSELLCRIADYFGVTADYLME 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL 118 + N +DP IG L Sbjct: 64 RSEQSCDF----NFADMDPREIGECL 85 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI--KPARKIKQVTKKHLD 170 R+ S+R+ K + Q G LLG+ T+S E IP+I + +I D Sbjct: 1 MGKNRIYSLRRQKKIPQALLGDLLGVSQQTVSKIESQP-IPDISSELLCRIADYFGVTAD 59 Query: 171 WIYFGDE 177 ++ E Sbjct: 60 YLMERSE 66 >gi|229155360|ref|ZP_04283470.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] gi|228628075|gb|EEK84792.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] Length = 404 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ +A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTALA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 92 DGEVID 97 + + ++ Sbjct: 63 EEDDVE 68 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + I+ K K +K D+ Sbjct: 65 DDVEIVALIQ--KMEPLIKANKCDE 87 >gi|229171236|ref|ZP_04298828.1| hypothetical protein bcere0006_3650 [Bacillus cereus MM3] gi|228612253|gb|EEK69483.1| hypothetical protein bcere0006_3650 [Bacillus cereus MM3] Length = 64 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +I ++R NN +Q +A +N EN S+ A L + D ++ Sbjct: 3 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 26/63 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 1 MKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 Query: 174 FGD 176 Sbjct: 61 LFK 63 >gi|229188198|ref|ZP_04315276.1| hypothetical protein bcere0004_57020 [Bacillus cereus BGSC 6E1] gi|228595274|gb|EEK53016.1| hypothetical protein bcere0004_57020 [Bacillus cereus BGSC 6E1] Length = 68 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K R+ KG+SQ + ++ + T++ E + P ++ A I + +D ++ Sbjct: 1 MHNQIKKFREHKGISQGKLAEMCNVSRQTINAIENNKYDPSLELAFSIAFILDSTVDTLF 60 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK R+ +Q ++A N +N EN S+ A + + + D ++ Sbjct: 3 NQIKKFREHKGISQGKLAEMCNVSRQTINAIENNKYDPSLELAFSIAFILDSTVDTLFIY 62 Query: 94 EVI 96 + Sbjct: 63 QKT 65 >gi|227832369|ref|YP_002834076.1| HTH-type transcriptional regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453385|gb|ACP32138.1| HTH-type transcriptional regulator [Corynebacterium aurimucosum ATCC 700975] Length = 435 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI +RK + TQ MA S +N EN ++ + L + + + Sbjct: 7 GARIHALRKERHLTQAAMAKQLGLSTSYLNQLENDQRPLTVTVLMQLTQRFGVDATYF 64 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + GAR+ ++RK++ ++Q K LG+ S L+ E + + ++ Q Sbjct: 1 MSKHYAGARIHALRKERHLTQAAMAKQLGLSTSYLNQLENDQRPLTVTVLMQLTQRFGVD 60 Query: 169 LDWIYFGD 176 + + GD Sbjct: 61 ATY-FAGD 67 >gi|225571494|ref|ZP_03780490.1| hypothetical protein CLOHYLEM_07592 [Clostridium hylemonae DSM 15053] gi|225159571|gb|EEG72190.1| hypothetical protein CLOHYLEM_07592 [Clostridium hylemonae DSM 15053] Length = 73 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 29/69 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R + +Q+++A + + + E G + S+R L + ++ + ++ Sbjct: 4 KKMKLARINMDMSQEDLARHVDVTRQTIGMIEAGKFNPSLRLCLAICRALGVTLNDLFWE 63 Query: 94 EVIDRRYED 102 E + Sbjct: 64 EDEEYEKNS 72 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 32/73 (43%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++K R + MSQ + + + + T+ E G+ P ++ I + L+ + Sbjct: 1 MKNKKMKLARINMDMSQEDLARHVDVTRQTIGMIEAGKFNPSLRLCLAICRALGVTLNDL 60 Query: 173 YFGDEVIVPKSIK 185 ++ ++ K+ + Sbjct: 61 FWEEDEEYEKNSR 73 >gi|167855531|ref|ZP_02478293.1| transcriptional regulator, XRE family protein [Haemophilus parasuis 29755] gi|219871292|ref|YP_002475667.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] gi|167853332|gb|EDS24584.1| transcriptional regulator, XRE family protein [Haemophilus parasuis 29755] gi|219691496|gb|ACL32719.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] Length = 113 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 35/82 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RI+ RK + ++++ N + ++ +E G ++ + + + ++ +W Sbjct: 11 KLIGQRIQQKRKEFGYSAEKLSECINLSQQQLSRYERGASKINVNHLIDIAIFFKTPINW 70 Query: 90 IYDGEVIDRRYEDVTNKKRLDP 111 + + E + ++ Sbjct: 71 FFQDCIPAEFTEKELKEIEINQ 92 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 + IG R++ RK+ G S + + + + LS YE+G + + I K Sbjct: 7 EMTDKLIGQRIQQKRKEFGYSAEKLSECINLSQQQLSRYERGASKINVNHLIDIAIFFKT 66 Query: 168 HLDWIYFG--DEVIVPKSIKRAKGNQS 192 ++W + K +K + NQ Sbjct: 67 PINWFFQDCIPAEFTEKELKEIEINQK 93 >gi|153941561|ref|YP_001393012.1| hypothetical protein CLI_A0008 [Clostridium botulinum F str. Langeland] gi|152937441|gb|ABS42938.1| conserved domain protein [Clostridium botulinum F str. Langeland] gi|295320987|gb|ADG01364.1| hypothetical protein CBF_P0008 [Clostridium botulinum F str. 230613] Length = 64 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 32 VGTR-IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G R +K R + +Q+++A +++ E G + S++ + + + + + Sbjct: 1 MGNRKMKIARVECDLSQQQLAEKVGITRQTISMIEAGKYNPSLKLCIGICKVLNKTLNDL 60 Query: 91 Y 91 + Sbjct: 61 F 61 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 ++K R + +SQ + + +G+ T+S E G+ P +K I +V K L+ + Sbjct: 1 MGNRKMKIARVECDLSQQQLAEKVGITRQTISMIEAGKYNPSLKLCIGICKVLNKTLNDL 60 Query: 173 YFGD 176 ++ D Sbjct: 61 FWED 64 >gi|91780942|ref|YP_556149.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia xenovorans LB400] gi|91693602|gb|ABE36799.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia xenovorans LB400] Length = 323 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 2/103 (1%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P ++ RI+ +R T+K++A+ + + E+G + S+ L Sbjct: 18 PASDPVLSELARRIRTLRAQRGMTRKQLALQSGVSIPHLARIESGEGNVSVSLLQKLSVA 77 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + + + + A L +R+ Sbjct: 78 LNLPIQDLLADGSSQNADLTM--LIQFLKQQTPAELARLRQML 118 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 24/58 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++++R +GM++ + G+ L+ E G + +K+ + + Sbjct: 29 RRIRTLRAQRGMTRKQLALQSGVSIPHLARIESGEGNVSVSLLQKLSVALNLPIQDLL 86 >gi|57234333|ref|YP_181610.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57234921|ref|YP_181022.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57234968|ref|YP_180999.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57224781|gb|AAW39838.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57225369|gb|AAW40426.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57225416|gb|AAW40473.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] Length = 217 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWI 90 +G +K++RK TQ E+A + + ++ E+G S ++ A L +IS + Sbjct: 7 IGITLKELRKKIGMTQSELARRSGVDRAYISQLESGKTYSATLGIAQKLARGLDISTSAL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + Sbjct: 67 LGEKEESLGNLLSRAQAISRRMDDIEFI 94 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKH 168 D +IG LK +RK GM+Q E + G+ + +S E G+ + A+K+ + Sbjct: 3 DKSSIGITLKELRKKIGMTQSELARRSGVDRAYISQLESGKTYSATLGIAQKLARGLDIS 62 Query: 169 LDWIYFGDEVIVPKSIKRAK 188 + E + + RA+ Sbjct: 63 TSALLGEKEESLGNLLSRAQ 82 >gi|83719318|ref|YP_441974.1| DNA-binding protein [Burkholderia thailandensis E264] gi|257138149|ref|ZP_05586411.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83653143|gb|ABC37206.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 192 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 25/63 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R++ +R + +A + S ++L E S + L + +S ++ Sbjct: 7 IARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGVSIASLF 66 Query: 92 DGE 94 + + Sbjct: 67 ERD 69 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 34/90 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++++R +G S + + S +S E+ ++ P ++ + ++ Sbjct: 9 RRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGVSIASLFER 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 D P S + S ++S +P Sbjct: 69 DRAASPLSRAAEQPVWKDPASGYVRRSLSP 98 >gi|13488130|ref|NP_085775.1| hypothetical protein mll9232 [Mesorhizobium loti MAFF303099] gi|14028024|dbj|BAB54616.1| mll9232 [Mesorhizobium loti MAFF303099] Length = 206 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 50/155 (32%), Gaps = 7/155 (4%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLES------AVNLFENGMCSTSIRYALYLRN 81 ++ T ++ R+ ++MA + + ++R + Sbjct: 53 LRANIATVLEAERRQRRLRHQDMAKLFHTSPGKGLAYRTYIKTARRKNNVTLRTLDMMAR 112 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 IS + + + + + +GA + S R+ + + + + +L+G+ Sbjct: 113 SLRISIATLLTAKTDIEPWVHELGDQSI-RKRLGAIINSERERRNLLRYQMAELIGVSEI 171 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 T + E+G + I + F D Sbjct: 172 TFAKLERGAGNISVDTIAGIAKSLCLDPTAFLFQD 206 Score = 43.4 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 19/58 (32%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + K +G I R+ N + +MA E E G + S+ + Sbjct: 138 QSIRKRLGAIINSERERRNLLRYQMAELIGVSEITFAKLERGAGNISVDTIAGIAKSL 195 >gi|309779373|ref|ZP_07674135.1| DNA binding protein [Ralstonia sp. 5_7_47FAA] gi|308921931|gb|EFP67566.1| DNA binding protein [Ralstonia sp. 5_7_47FAA] Length = 198 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 26/65 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 VG +++ +R+A + E++ A +S ++ E + + ++ L + Sbjct: 15 PAVGAKLQTLRQARKLSLDELSRRAGVSKSMLSQVERNLANPTVAVLWRLATALGVGLAD 74 Query: 90 IYDGE 94 E Sbjct: 75 FLSPE 79 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+GA+L+++R+ + +S E + G+ S LS E+ P + ++ L Sbjct: 16 AVGAKLQTLRQARKLSLDELSRRAGVSKSMLSQVERNLANPTVAVLWRLATALGVGLADF 75 Query: 173 YFGD 176 + Sbjct: 76 LSPE 79 >gi|310658865|ref|YP_003936586.1| transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825643|emb|CBH21681.1| putative transcriptional regulator [Clostridium sticklandii] Length = 126 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN------QLESAVNLFENGMCSTSIRYALYLRNEYEI 85 G R K +R TQ E+ N +S+++++EN + +++ Sbjct: 5 FGKRFKSLRVEKGITQDELVKQFNEKYFYNFTKSSISMYENDKQVPEVDVLKKWAEFFQV 64 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRLD 110 + D++ I Y++ K D Sbjct: 65 ALDYLLGNSDIKNPYKEAPEKTDED 89 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Query: 119 KSIRKDKGMSQIEFGKLLG------MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 KS+R +KG++Q E K S++S YE + +PE+ +K + + LD++ Sbjct: 10 KSLRVEKGITQDELVKQFNEKYFYNFTKSSISMYENDKQVPEVDVLKKWAEFFQVALDYL 69 Query: 173 YFGDEVIVPKSIKRAKGNQS 192 ++ P K ++ Sbjct: 70 LGNSDIKNPYKEAPEKTDED 89 >gi|307328736|ref|ZP_07607908.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306885685|gb|EFN16699.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 204 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 6/100 (6%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 + ++ F +T ++++ ++ E R + TR+ D+R+ + E+A S Sbjct: 2 VTISHFWDT-FSNMRDSGIVEPLEAR-----LATRLGDLRRERGWSLDELARRTGISRST 55 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRY 100 ++ E G S + L YE + + + Sbjct: 56 LSRLERGEISPTAALLNTLCAAYERTMSRLLAEVEAEPPQ 95 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 +R+++G S E + G+ STLS E+G P + ++ + + E Sbjct: 34 LRRERGWSLDELARRTGISRSTLSRLERGEISPTAALLNTLCAAYERTMSRLLAEVEAEP 93 Query: 181 PKSIKRA 187 P+ ++ A Sbjct: 94 PQVVRAA 100 >gi|291526368|emb|CBK91955.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291526813|emb|CBK92399.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 187 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 5/102 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V +K IR++ + ++A +S + E G + SI + + I F + Sbjct: 7 NVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSGLRIEFQRL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 D +D D L R + Sbjct: 67 IDPPRVDYALISPD-----DLVPTKELLGQYRVWTCFPYEDS 103 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 25/50 (50%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + + LK IR+ KGMS + + G+ S L+ E+G P I KI Sbjct: 6 HNVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKI 55 >gi|238922527|ref|YP_002936040.1| hypothetical protein EUBREC_0101 [Eubacterium rectale ATCC 33656] gi|238874199|gb|ACR73906.1| Hypothetical protein EUBREC_0101 [Eubacterium rectale ATCC 33656] Length = 189 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 5/102 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V +K IR++ + ++A +S + E G + SI + + I F + Sbjct: 9 NVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSGLRIEFQRL 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 D +D D L R + Sbjct: 69 IDPPRVDYALISPD-----DLVPTKELLGQYRVWTCFPYEDS 105 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 107 KRLDPYA--IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 +D + + LK IR+ KGMS + + G+ S L+ E+G P I KI Sbjct: 1 MSMDYLSHNVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKI 57 >gi|210610561|ref|ZP_03288487.1| hypothetical protein CLONEX_00677 [Clostridium nexile DSM 1787] gi|210152420|gb|EEA83426.1| hypothetical protein CLONEX_00677 [Clostridium nexile DSM 1787] Length = 101 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 27/65 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RI+ +R ++A + + ++ ENG + ++ + S D++ Sbjct: 16 QIGQRIQKLRIDKKIAAVDLAAVLDIQSNQMSRIENGRANCTVPQLYVISQILGCSVDYL 75 Query: 91 YDGEV 95 G+ Sbjct: 76 LFGKQ 80 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%) Query: 98 RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKP 157 + D IG R++ +R DK ++ ++ +L + ++ +S E GR + Sbjct: 1 MTWTDFKEYSSDVQLQIGQRIQKLRIDKKIAAVDLAAVLDIQSNQMSRIENGRANCTVPQ 60 Query: 158 ARKIKQVTKKHLDWIYFGDE 177 I Q+ +D++ FG + Sbjct: 61 LYVISQILGCSVDYLLFGKQ 80 >gi|194018000|ref|ZP_03056607.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194010337|gb|EDW19912.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 77 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ RK TQ+ A S + E G + + + + I+ + + Sbjct: 7 GRRIRAYRKLKGYTQEGFAKRLGISVSVLGEIERGNRLPTNQLVDQIADALNITVEEL 64 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ G R+++ RK KG +Q F K LG+ S L E+G +P + +I Sbjct: 1 MEKDMWGRRIRAYRKLKGYTQEGFAKRLGISVSVLGEIERGNRLPTNQLVDQIADALNIT 60 Query: 169 LDWI 172 ++ + Sbjct: 61 VEEL 64 >gi|163841767|ref|YP_001626172.1| Cro/CI family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162955243|gb|ABY24758.1| transcriptional regulator, Cro/CI family [Renibacterium salmoninarum ATCC 33209] Length = 79 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANN-KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I+ +R ++ TQ E+A + E G S S+ A + ++ + + Sbjct: 7 ISNSIRGLRFSHGEMTQAELAERIGVTRQTIIAIEQGKYSPSLEVAFQIAGILQVRLEDV 66 Query: 91 YD 92 + Sbjct: 67 FH 68 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKG-MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R G M+Q E + +G+ T+ EQG+ P ++ A +I + + L+ ++ Sbjct: 9 NSIRGLRFSHGEMTQAELAERIGVTRQTIIAIEQGKYSPSLEVAFQIAGILQVRLEDVF 67 >gi|158422455|ref|YP_001523747.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329344|dbj|BAF86829.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 301 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 +R+ + RI++IRK Q E A + +V+ +E L + Sbjct: 54 NMRRGMPNYARRIREIRKNLGMNQAEFAAALGVSQGSVSKWEAAKEQPRTTALLKIAELA 113 Query: 84 EISFDWIYDGEVIDRRYE 101 + ++ G +++ + Sbjct: 114 GLPSFSLFSGTDHNQKRQ 131 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R++ IRK+ GM+Q EF LG+ ++S +E + P KI ++ ++ Sbjct: 62 YARRIREIRKNLGMNQAEFAAALGVSQGSVSKWEAAKEQPRTTALLKIAELAGLPSFSLF 121 Query: 174 FGDE 177 G + Sbjct: 122 SGTD 125 >gi|126348551|emb|CAJ90275.1| putative transcriptional regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 190 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 25/72 (34%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ + + +K R T + +A A + E + S+ + + + Sbjct: 3 DLDLLTQSLARNVKRWRGERGFTLETLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDAL 62 Query: 84 EISFDWIYDGEV 95 IS + D E Sbjct: 63 GISITTLLDREQ 74 Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +K R ++G + G+ L EQ RT P + KI + + Sbjct: 13 RNVKRWRGERGFTLETLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGISITTLLDR 72 Query: 176 DE 177 ++ Sbjct: 73 EQ 74 >gi|118476146|ref|YP_893297.1| Cro/CI family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118415371|gb|ABK83790.1| transcriptional regulator, Cro/CI family [Bacillus thuringiensis str. Al Hakam] Length = 83 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I ++R NN +Q +A +N EN S+ A L + D ++ Sbjct: 22 NQIYELRTKNNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLFLY 81 Query: 94 EV 95 + Sbjct: 82 KQ 83 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 24/59 (40%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 21 KNQIYELRTKNNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|194336093|ref|YP_002017887.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] gi|194308570|gb|ACF43270.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] Length = 130 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 21/57 (36%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 IK R+ TQ+++A ++ E + + L + ++ D I Sbjct: 70 IKVWREYRGLTQQQLAETVGISTPYLSQIETSKRTGTTEVLLAVAKALNVTLDDIVF 126 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +K R+ +G++Q + + +G+ LS E + + + + LD I F Sbjct: 67 ENPIKVWREYRGLTQQQLAETVGISTPYLSQIETSKRTGTTEVLLAVAKALNVTLDDIVF 126 >gi|330685364|gb|EGG97023.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU121] Length = 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G +Q + K G+ T+S E+ P I A KI ++ + ++ I+ Sbjct: 1 MRNRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAMKIARIFNEPVESIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IIEEE 65 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q ++A A V+L E + SI A+ + + + I+ Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAMKIARIFNEPVESIFII 62 Query: 94 EVID 97 E D Sbjct: 63 EEED 66 >gi|239626426|ref|ZP_04669457.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516572|gb|EEQ56438.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 65 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +I+++RK N TQ+E+A + ENG + S++ A + +E S + I+ E Sbjct: 4 KIQELRKQNKVTQEELAAALGVTRQTIISLENGKYNASLQLAFKIARFFERSIEEIFLYE 63 Query: 95 VI 96 Sbjct: 64 EE 65 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 34/65 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +++ +RK ++Q E LG+ T+ + E G+ ++ A KI + ++ ++ I+ Sbjct: 1 MKTKIQELRKQNKVTQEELAAALGVTRQTIISLENGKYNASLQLAFKIARFFERSIEEIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 LYEEE 65 >gi|269127227|ref|YP_003300597.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312185|gb|ACY98559.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 164 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 44/151 (29%), Gaps = 16/151 (10%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLES-----AVNLFENGMCSTSIRYALYLRN 81 +Y K +G R++ IR + + V +E G + +++ L + Sbjct: 4 EYAKALGARLRAIRTQQGLSLHGVEEK---SRGRWKAVVVGSYERGDRAVTVQKLAELAD 60 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNS 141 Y + + G RL+ + KDK + + S Sbjct: 61 FYGVPVSELLPGGASPSPLGPTPKL-----VIDLERLQQLPKDKAGPLARYAATI---QS 112 Query: 142 TLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +Y + R + + K + Sbjct: 113 QRGDYNGKVLSIRQEDLRSLAVIYDKSPADL 143 Score = 38.4 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 8/68 (11%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTL-----SNYEQGRTIPEIKPARKIKQVTKK 167 A+GARL++IR +G+S + +YE+G ++ ++ Sbjct: 8 ALGARLRAIRTQQGLSLHGVEEK---SRGRWKAVVVGSYERGDRAVTVQKLAELADFYGV 64 Query: 168 HLDWIYFG 175 + + G Sbjct: 65 PVSELLPG 72 >gi|227509901|ref|ZP_03939950.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512835|ref|ZP_03942884.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227083835|gb|EEI19147.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227190621|gb|EEI70688.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 78 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+++ RK +Q +A +NL EN + S+ + + + ++ Sbjct: 13 NRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAKVLGTDLNTLF 70 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ RK + +SQ + +G+ T++ E + P + I +V L+ +++ Sbjct: 13 NRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAKVLGTDLNTLFWE 72 Query: 176 DEV 178 E Sbjct: 73 VED 75 >gi|326440324|ref|ZP_08215058.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 275 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 + G R++ +R TQ+E+A + ++ E G + R+A Sbjct: 9 EKSPRAAFGARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPTPRFAKK 62 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 + + ++ A GARL+++R ++G +Q E + +G + +S E GR P + A+ Sbjct: 2 HRKELDPEKSPRAAFGARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPTPRFAK 61 Query: 160 KIKQVTKK 167 K + Sbjct: 62 KADRALGT 69 >gi|206973843|ref|ZP_03234761.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217959938|ref|YP_002338494.1| DNA-binding protein [Bacillus cereus AH187] gi|222096025|ref|YP_002530082.1| DNA-binding protein [Bacillus cereus Q1] gi|206747999|gb|EDZ59388.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217067028|gb|ACJ81278.1| DNA-binding protein [Bacillus cereus AH187] gi|221240083|gb|ACM12793.1| DNA-binding protein [Bacillus cereus Q1] Length = 185 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|30018643|ref|NP_830274.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|30260558|ref|NP_842935.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47777808|ref|YP_017011.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|165870743|ref|ZP_02215396.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167634785|ref|ZP_02393104.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641241|ref|ZP_02399494.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170688950|ref|ZP_02880151.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707213|ref|ZP_02897669.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177654526|ref|ZP_02936382.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567478|ref|ZP_03020391.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196034760|ref|ZP_03102168.1| DNA-binding protein [Bacillus cereus W] gi|196040074|ref|ZP_03107376.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196045277|ref|ZP_03112509.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206967804|ref|ZP_03228760.1| DNA-binding protein [Bacillus cereus AH1134] gi|206974225|ref|ZP_03235142.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217957986|ref|YP_002336530.1| DNA-binding protein [Bacillus cereus AH187] gi|218233192|ref|YP_002365235.1| DNA-binding protein [Bacillus cereus B4264] gi|218895509|ref|YP_002443920.1| DNA-binding protein [Bacillus cereus G9842] gi|218901593|ref|YP_002449427.1| DNA-binding protein [Bacillus cereus AH820] gi|225862432|ref|YP_002747810.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227813061|ref|YP_002813070.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228919320|ref|ZP_04082690.1| hypothetical protein bthur0011_3480 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228963500|ref|ZP_04124657.1| hypothetical protein bthur0004_3810 [Bacillus thuringiensis serovar sotto str. T04001] gi|229051698|ref|ZP_04195159.1| hypothetical protein bcere0027_55960 [Bacillus cereus AH676] gi|229068140|ref|ZP_04201447.1| hypothetical protein bcere0025_3560 [Bacillus cereus F65185] gi|229108059|ref|ZP_04237684.1| hypothetical protein bcere0018_3500 [Bacillus cereus Rock1-15] gi|229143178|ref|ZP_04271610.1| hypothetical protein bcere0012_3510 [Bacillus cereus BDRD-ST24] gi|229159537|ref|ZP_04287552.1| hypothetical protein bcere0009_3430 [Bacillus cereus R309803] gi|229176977|ref|ZP_04304372.1| hypothetical protein bcere0005_3570 [Bacillus cereus 172560W] gi|229188657|ref|ZP_04315696.1| hypothetical protein bcere0002_3520 [Bacillus cereus ATCC 10876] gi|229601629|ref|YP_002865007.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254686779|ref|ZP_05150637.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724855|ref|ZP_05186638.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254738996|ref|ZP_05196698.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744583|ref|ZP_05202262.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254756159|ref|ZP_05208188.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761977|ref|ZP_05213826.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|296501215|ref|YP_003662915.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|301052106|ref|YP_003790317.1| PBSX family transcriptional regulator [Bacillus anthracis CI] gi|29894184|gb|AAP07475.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|30253926|gb|AAP24421.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47551513|gb|AAT29486.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164713577|gb|EDR19101.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510749|gb|EDR86142.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529859|gb|EDR92607.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127991|gb|EDS96862.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170667051|gb|EDT17813.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172080638|gb|EDT65721.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561265|gb|EDV15237.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195992803|gb|EDX56763.1| DNA-binding protein [Bacillus cereus W] gi|196023861|gb|EDX62536.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196028929|gb|EDX67534.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206736724|gb|EDZ53871.1| DNA-binding protein [Bacillus cereus AH1134] gi|206747465|gb|EDZ58855.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066337|gb|ACJ80587.1| DNA-binding protein [Bacillus cereus AH187] gi|218161149|gb|ACK61141.1| DNA-binding protein [Bacillus cereus B4264] gi|218534868|gb|ACK87266.1| DNA-binding protein [Bacillus cereus AH820] gi|218542669|gb|ACK95063.1| DNA-binding protein [Bacillus cereus G9842] gi|225788241|gb|ACO28458.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227005175|gb|ACP14918.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228594846|gb|EEK52626.1| hypothetical protein bcere0002_3520 [Bacillus cereus ATCC 10876] gi|228606452|gb|EEK63878.1| hypothetical protein bcere0005_3570 [Bacillus cereus 172560W] gi|228623942|gb|EEK80753.1| hypothetical protein bcere0009_3430 [Bacillus cereus R309803] gi|228640259|gb|EEK96657.1| hypothetical protein bcere0012_3510 [Bacillus cereus BDRD-ST24] gi|228675334|gb|EEL30553.1| hypothetical protein bcere0018_3500 [Bacillus cereus Rock1-15] gi|228714954|gb|EEL66822.1| hypothetical protein bcere0025_3560 [Bacillus cereus F65185] gi|228721655|gb|EEL73138.1| hypothetical protein bcere0027_55960 [Bacillus cereus AH676] gi|228796194|gb|EEM43645.1| hypothetical protein bthur0004_3810 [Bacillus thuringiensis serovar sotto str. T04001] gi|228840427|gb|EEM85698.1| hypothetical protein bthur0011_3480 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229266037|gb|ACQ47674.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|296322267|gb|ADH05195.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|300374275|gb|ADK03179.1| transcriptional regulator, PBSX family [Bacillus cereus biovar anthracis str. CI] gi|326938175|gb|AEA14071.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 64 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I ++R NN +Q +A +N EN S+ A L + D ++ Sbjct: 3 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLFLY 62 Query: 94 EV 95 + Sbjct: 63 KQ 64 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++ +R + +SQ + T++ E + P + A ++ +V +D ++ Sbjct: 1 MKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|15607615|ref|NP_214988.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15839863|ref|NP_334900.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31791654|ref|NP_854147.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|121636390|ref|YP_976613.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660241|ref|YP_001281764.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148821673|ref|YP_001286427.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167970705|ref|ZP_02552982.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|215402227|ref|ZP_03414408.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215409992|ref|ZP_03418800.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215425701|ref|ZP_03423620.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215444577|ref|ZP_03431329.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218752108|ref|ZP_03530904.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219556293|ref|ZP_03535369.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224988862|ref|YP_002643549.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253797402|ref|YP_003030403.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254230822|ref|ZP_04924149.1| hypothetical protein TBCG_00466 [Mycobacterium tuberculosis C] gi|254363439|ref|ZP_04979485.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|254549422|ref|ZP_05139869.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185342|ref|ZP_05762816.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260199473|ref|ZP_05766964.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260203626|ref|ZP_05771117.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289441856|ref|ZP_06431600.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289446017|ref|ZP_06435761.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289552725|ref|ZP_06441935.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289568393|ref|ZP_06448620.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289573061|ref|ZP_06453288.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289744172|ref|ZP_06503550.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289748964|ref|ZP_06508342.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289756549|ref|ZP_06515927.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289760592|ref|ZP_06519970.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294995981|ref|ZP_06801672.1| transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|297632959|ref|ZP_06950739.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN 4207] gi|297729934|ref|ZP_06959052.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN R506] gi|298523952|ref|ZP_07011361.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis 94_M4241A] gi|306774572|ref|ZP_07412909.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306779320|ref|ZP_07417657.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306783110|ref|ZP_07421432.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306787478|ref|ZP_07425800.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306792029|ref|ZP_07430331.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306796215|ref|ZP_07434517.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306802073|ref|ZP_07438741.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306806284|ref|ZP_07442952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306966480|ref|ZP_07479141.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306970676|ref|ZP_07483337.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307078400|ref|ZP_07487570.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307082959|ref|ZP_07492072.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313657263|ref|ZP_07814143.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN V2475] gi|81669532|sp|O53759|Y474_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator Rv0474/MT0491 gi|2909550|emb|CAA17429.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13879998|gb|AAK44714.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis CDC1551] gi|31617240|emb|CAD93347.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] gi|121492037|emb|CAL70500.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599881|gb|EAY58891.1| hypothetical protein TBCG_00466 [Mycobacterium tuberculosis C] gi|134148953|gb|EBA40998.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148504393|gb|ABQ72202.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148720200|gb|ABR04825.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224771975|dbj|BAH24781.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253318905|gb|ACT23508.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289414775|gb|EFD12015.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289418975|gb|EFD16176.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289437357|gb|EFD19850.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289537492|gb|EFD42070.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289542146|gb|EFD45795.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289684700|gb|EFD52188.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289689551|gb|EFD56980.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289708098|gb|EFD72114.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289712113|gb|EFD76125.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298493746|gb|EFI29040.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis 94_M4241A] gi|308216919|gb|EFO76318.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308327764|gb|EFP16615.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308332127|gb|EFP20978.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308335853|gb|EFP24704.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339516|gb|EFP28367.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308343384|gb|EFP32235.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308347293|gb|EFP36144.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308351223|gb|EFP40074.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308355876|gb|EFP44727.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308359797|gb|EFP48648.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308363736|gb|EFP52587.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308367393|gb|EFP56244.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323721149|gb|EGB30211.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326902301|gb|EGE49234.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328457188|gb|AEB02611.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 140 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 34/81 (41%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 + S ++ ++ + D+G+ I+ R+ + + +++A + ++ E G+ Sbjct: 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60 Query: 71 TSIRYALYLRNEYEISFDWIY 91 S + +S + +Y Sbjct: 61 PSADVLSQIAKALRVSAEVLY 81 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + ++S R+ +S + + G+ N LS E+G P +I + + + +Y Sbjct: 24 SFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVLYVR 83 Query: 176 DEVIVPKSIKRAK 188 ++ P + + Sbjct: 84 AGILEPSETSQVR 96 >gi|329116131|ref|ZP_08244848.1| peptidase S24-like protein [Streptococcus parauberis NCFD 2020] gi|326906536|gb|EGE53450.1| peptidase S24-like protein [Streptococcus parauberis NCFD 2020] Length = 230 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 38/86 (44%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G ++K IR+ + +Q+++ + ++ +E S + ++ L + +E D+ Sbjct: 4 GKQLKKIRQQHKMSQEQLGQELGVNKMTISNWEKDKNSPNQKHLNALVSIFETDQDYFNH 63 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARL 118 + I Y+ +T + + +L Sbjct: 64 YQEIIIPYKQLTKQNQSKVVTYSEKL 89 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK IR+ MSQ + G+ LG+ T+SN+E+ + P K + + + D+ Sbjct: 1 MFSGKQLKKIRQQHKMSQEQLGQELGVNKMTISNWEKDKNSPNQKHLNALVSIFETDQDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201 E+I+P K+ SK +K Sbjct: 61 FNHYQEIIIPY--KQLTKQNQSKVVTYSEK 88 >gi|312141149|ref|YP_004008485.1| transcriptional regulator [Rhodococcus equi 103S] gi|325674029|ref|ZP_08153719.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311890488|emb|CBH49806.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555294|gb|EGD24966.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 155 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 9/119 (7%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+G+ I+ R+A + +++A A ++ E G+ S + +S + Sbjct: 20 QDIGSFIRSQREAAQVSLRQLAQLAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSSEV 79 Query: 90 IY---------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMP 139 +Y + + +S R++ Q E Sbjct: 80 LYVQAGILEQRPHSPVRDALLADGAITERQKQVLLEIYESFRRENDPHQSESADQADAS 138 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++S R+ +S + +L G+ N LS E+G P +I + + + +Y Sbjct: 24 SFIRSQREAAQVSLRQLAQLAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSSEVLY 81 >gi|239999287|ref|ZP_04719211.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae 35/02] Length = 236 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 4/87 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ RK N +Q+ +A A +S + E+G L ++S W+ G Sbjct: 6 DRLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNK-KATNIAKLAKILDVSAFWLETG 64 Query: 94 EVIDRRY---EDVTNKKRLDPYAIGAR 117 E + D + Sbjct: 65 EGSRNTPVLINPDLPHEVKDIHRPMMW 91 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK RK+K +SQ KL + ST++ E GR + K+ ++ Sbjct: 1 MSEFKDRLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNK-KATNIAKLAKILDVSAF 59 Query: 171 WIYFGD 176 W+ G+ Sbjct: 60 WLETGE 65 >gi|228969508|ref|ZP_04130319.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228790210|gb|EEM37981.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 112 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++ +K +R + TQ+E+A N + +ENG + + + + + D Sbjct: 1 MREFNKMLKKLRNSYGLTQEELASKLNLSRGQIKNYENG-FEPDLETLDRIASYFNVPVD 59 Query: 89 WIYDGEVI 96 + + + Sbjct: 60 VLLNRNIK 67 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 LK +R G++Q E L + + NYE P+++ +I +D Sbjct: 1 MREFNKMLKKLRNSYGLTQEELASKLNLSRGQIKNYEN-GFEPDLETLDRIASYFNVPVD 59 Query: 171 WIYFGDEVIVPKSIKRA 187 + + K ++ Sbjct: 60 VLLNRNIKHNTKIVENT 76 >gi|229148382|ref|ZP_04276660.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228635082|gb|EEK91634.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] Length = 79 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R TQ+E+A+ N + L E + S++ + + + + D ++ Sbjct: 18 SKIKIARTEKGLTQQELAVLVNVTRQTIGLIELNKYNPSLKLCIDIAKSLDKTLDELFWE 77 Query: 94 EV 95 E Sbjct: 78 EK 79 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +++K R +KG++Q E L+ + T+ E + P +K I + K LD Sbjct: 13 YLMSVSKIKIARTEKGLTQQELAVLVNVTRQTIGLIELNKYNPSLKLCIDIAKSLDKTLD 72 Query: 171 WIYFGDE 177 +++ ++ Sbjct: 73 ELFWEEK 79 >gi|260589928|ref|ZP_05855841.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM 20583] gi|260539735|gb|EEX20304.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM 20583] Length = 116 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 35/103 (33%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G ++ R+ +Q +A A ++ E + + + + Sbjct: 3 MDTVKKKLGYMVRSERERRGLSQSRLAEQAGVSTRTISDIETCNGNPELATLIPIAQFLN 62 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 IS D E + K L + R ++R +G+ Sbjct: 63 ISIDAAVQDERKEPDTTTYQIMKELQNCSEDERQIALRTLRGL 105 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++S R+ +G+SQ + G+ T+S+ E PE+ I Q +D Sbjct: 13 MVRSERERRGLSQSRLAEQAGVSTRTISDIETCNGNPELATLIPIAQFLNISID 66 >gi|254502876|ref|ZP_05115027.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438947|gb|EEE45626.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 182 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + I+ R + +A A +S ++ E G + S+ + + + F +++ Sbjct: 7 IAKAIQRERLKAGMSLSALAKTAGLAKSTLSQLEAGQGNPSVETLWAIASALNVPFSFLF 66 Query: 92 DGEVIDRRYEDVTNKKRL 109 + D+ + + Sbjct: 67 ETGTTDKTLIRAGEGEPV 84 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R GMS K G+ STLS E G+ P ++ I +++ Sbjct: 9 KAIQRERLKAGMSLSALAKTAGLAKSTLSQLEAGQGNPSVETLWAIASALNVPFSFLF 66 >gi|163733855|ref|ZP_02141297.1| HTH-type transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161392966|gb|EDQ17293.1| HTH-type transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 119 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG ++K IR +Q ++A N + +E G + L +++ + + Sbjct: 9 VGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIFDVPTSYFF 68 Query: 92 DG 93 +G Sbjct: 69 EG 70 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK IR + +SQ + + L + + YE G ++ ++ + + G + Sbjct: 13 LKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIFDVPTSYFFEGLD 72 Query: 178 VIVPKSIKR 186 + +R Sbjct: 73 AATKTTCER 81 >gi|148643588|ref|YP_001274101.1| HTH XRE-like family transcriptional regulator [Methanobrevibacter smithii ATCC 35061] gi|148552605|gb|ABQ87733.1| predicted transcriptional regulator, HTH XRE-like family [Methanobrevibacter smithii ATCC 35061] Length = 115 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 5/110 (4%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K VG R++ +R+ +QK +A + + ++ G S+ L + S Sbjct: 5 NKIVGERMEFLRENMGVSQKNLAEYLDISQPYLSQIAAGKRPMSLTILDKLCALFGCSEQ 64 Query: 89 WIYDGEVIDRRYEDVTNKKRLD-----PYAIGARLKSIRKDKGMSQIEFG 133 ++ + K++D A +L K Q E G Sbjct: 65 YLLGLDDSFHPKSYAFRSKKIDVADLKCIASINKLYKNLKYLHKKQKELG 114 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D +G R++ +R++ G+SQ + L + LS G+ + K+ + Sbjct: 1 MVVDNKIVGERMEFLRENMGVSQKNLAEYLDISQPYLSQIAAGKRPMSLTILDKLCALFG 60 Query: 167 KHLDWIYFGDEVIVPKS 183 ++ D+ PKS Sbjct: 61 CSEQYLLGLDDSFHPKS 77 >gi|312794293|ref|YP_004027216.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181433|gb|ADQ41603.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 68 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISF 87 G +I+++RK+ +Q+E A A +S ++ ENG + S+ + ++ Sbjct: 4 GRKIRELRKSKGLSQREFAKLAGLSQSYISELENGIKTNPSLSVIKKISKALKVDI 59 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHL 169 G +++ +RK KG+SQ EF KL G+ S +S E G +T P + +KI + K + Sbjct: 1 MIPGRKIRELRKSKGLSQREFAKLAGLSQSYISELENGIKTNPSLSVIKKISKALKVDI 59 >gi|260890727|ref|ZP_05901990.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] gi|260859605|gb|EEX74105.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] Length = 203 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ ++ +K++RK N TQ+ +A + + +E G+ + SI L + +++S Sbjct: 5 KFKENFKEILKELRKKKNLTQRGLAEKTGISLAMITKYEQGLNTPSIENLRVLADFFKVS 64 Query: 87 F 87 Sbjct: 65 I 65 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +RK K ++Q + G+ + ++ YEQG P I+ R + K + Sbjct: 10 FKEILKELRKKKNLTQRGLAEKTGISLAMITKYEQGLNTPSIENLRVLADFFKVSIRNFL 69 Query: 174 FGD 176 D Sbjct: 70 EED 72 >gi|163868997|ref|YP_001610227.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018674|emb|CAK02232.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 5/105 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD--- 88 +G RI+ R + +QK + V +E G+ S L + + ++ Sbjct: 20 IGARIRHRRISMGLSQKALGNTLGVSFQQVQKYEKGLNRVSAGCLLEIAQKLQVPISFFY 79 Query: 89 -WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + ++ + N+ A LK+ R+ + Q Sbjct: 80 ADLLTTDIATKENLSHCNQDTYSEKE-HALLKNFRELQPKKQKAI 123 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + N +D +IGAR++ R G+SQ G LG+ + YE+G Sbjct: 2 PTKNPHFQTKNSNFVDT-SIGARIRHRRISMGLSQKALGNTLGVSFQQVQKYEKGLNRVS 60 Query: 155 IKPARKIKQVTKKHLDWIY 173 +I Q + + + Y Sbjct: 61 AGCLLEIAQKLQVPISFFY 79 >gi|239814989|ref|YP_002943899.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801566|gb|ACS18633.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ +R A + +A + S ++ E G+ S S+ + + + Sbjct: 6 IGAQVRALRMAAEMSAGSLAKASGVSASMLSRIERGLVSPSVETLERVAQGLHVPVSRFF 65 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + V K + Sbjct: 66 GDQARRTDFSHVRAGKGV 83 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + IGA+++++R MS K G+ S LS E+G P ++ ++ Q Sbjct: 1 MSAARIGAQVRALRMAAEMSAGSLAKASGVSASMLSRIERGLVSPSVETLERVAQGLHVP 60 Query: 169 LDWIYFGDE 177 + +FGD+ Sbjct: 61 VSR-FFGDQ 68 >gi|237746118|ref|ZP_04576598.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229377469|gb|EEO27560.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 130 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 33/83 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R +SQ E + +G+ + +E+ +T+P RK+ +I FG Sbjct: 6 KRIEDCRHGLNISQSELARKIGVTPQAVQKWEKAKTVPRGATLRKLADALGVSPAYIQFG 65 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 VP + +K+ Sbjct: 66 ISDPVPDYPAVEQEKAEYIVNKR 88 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 27/87 (31%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+D R N +Q E+A AV +E L + +S +I Sbjct: 3 KIAKRIEDCRHGLNISQSELARKIGVTPQAVQKWEKAKTVPRGATLRKLADALGVSPAYI 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGAR 117 G +++ + Sbjct: 63 QFGISDPVPDYPAVEQEKAEYIVNKRP 89 >gi|229150628|ref|ZP_04278842.1| hypothetical protein bcere0011_21790 [Bacillus cereus m1550] gi|228632715|gb|EEK89330.1| hypothetical protein bcere0011_21790 [Bacillus cereus m1550] Length = 185 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LKSIR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|229163492|ref|ZP_04291443.1| Transcriptional regulator, Xre [Bacillus cereus R309803] gi|228620061|gb|EEK76936.1| Transcriptional regulator, Xre [Bacillus cereus R309803] Length = 190 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYMKETGMEMHRACL 119 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|219855859|ref|YP_002472981.1| hypothetical protein CKR_2516 [Clostridium kluyveri NBRC 12016] gi|219569583|dbj|BAH07567.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 208 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 16 EYTLIITPEI--RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 +Y++I++ EI +G +K+IRK T + ++ N S + E G+ + +I Sbjct: 14 QYSIILSKEIFMEDIKSIIGINLKNIRKKRQLTLEMLSKLTNVSISMLGEIERGITNPTI 73 Query: 74 RYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 + + +I F + + E ++ K + Sbjct: 74 TVLWKIADGLKIPFTDLINEEKPPISVVYNSDAKTI 109 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK+IRK + ++ KL + S L E+G T P I KI K + + Sbjct: 35 NLKNIRKKRQLTLEMLSKLTNVSISMLGEIERGITNPTITVLWKIADGLKIPFTDLINEE 94 Query: 177 EVIV 180 + + Sbjct: 95 KPPI 98 >gi|218695133|ref|YP_002402800.1| transcriptional repressor DicA [Escherichia coli 55989] gi|253773470|ref|YP_003036301.1| transcriptional repressor DicA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161633|ref|YP_003044741.1| transcriptional repressor DicA [Escherichia coli B str. REL606] gi|297519572|ref|ZP_06937958.1| transcriptional repressor DicA [Escherichia coli OP50] gi|301018731|ref|ZP_07183033.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|331668029|ref|ZP_08368884.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli TA271] gi|218351865|emb|CAU97588.1| HTH-type transcriptional regulator dicA (Repressor protein of division inhibition gene dicA) of prophage [Escherichia coli 55989] gi|242377304|emb|CAQ32048.1| ybl80 [Escherichia coli BL21(DE3)] gi|253324514|gb|ACT29116.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973534|gb|ACT39205.1| prophage CP-9330 DicA-like protein [Escherichia coli B str. REL606] gi|253977729|gb|ACT43399.1| prophage CP-9330 DicA-like protein [Escherichia coli BL21(DE3)] gi|300399570|gb|EFJ83108.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|312946171|gb|ADR26998.1| transcriptional repressor DicA [Escherichia coli O83:H1 str. NRG 857C] gi|323947994|gb|EGB43988.1| helix-turn-helix protein [Escherichia coli H120] gi|331064771|gb|EGI36675.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli TA271] Length = 135 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 29/92 (31%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G R+ RK TQ+E A A ++ +E + L + + S W Sbjct: 4 RTLGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQPVGKRLFALADALKCSPTW 63 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + G+ + L + Sbjct: 64 LMFGDEDKAPVPAQELHVETELTPNHKELIEL 95 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 38/78 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G R+ + RK+ ++Q E +L G+ + T+S +E+ T P K + K Sbjct: 1 MDTRTLGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQPVGKRLFALADALKCS 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 W+ FGDE P + Sbjct: 61 PTWLMFGDEDKAPVPAQE 78 >gi|213019847|ref|ZP_03335649.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994595|gb|EEB55241.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 310 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 3/99 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + +++ R TQK++A V +E G SI + +S + Sbjct: 16 QIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVSIADL 75 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL--KSIRKDKGM 127 ++ Y + ++ L+ ++ + +RK + Sbjct: 76 IPV-SNEKIYLENKEEEILNLIREYKKISGQELRKVFCL 113 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 37/102 (36%), Gaps = 1/102 (0%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ + +G +IK+ R TQK++A + ++ +E G + + + Sbjct: 159 VEEKVGSIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIA 218 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 I+ + + + ++ Y + +R Sbjct: 219 ETLSINIMDLLELTEDADDKVENELPNLIEEYKEIES-QELR 259 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 2/122 (1%) Query: 65 ENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 EN + I+ A L E IS D I + E V K IG ++K R Sbjct: 123 ENSKKTERIKIAKGLVKE-GISID-IVSKTIGLSVDECVEEKVGSIYCQIGKKIKEWRLV 180 Query: 125 KGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSI 184 +G +Q + + + +SNYEQGR ++ I + ++ + E K Sbjct: 181 RGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLELTEDADDKVE 240 Query: 185 KR 186 Sbjct: 241 NE 242 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y I +++S R +G +Q + +G+ + YE+G I+ I + + Sbjct: 15 YQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVSIAD 74 Query: 172 IY 173 + Sbjct: 75 LI 76 >gi|195977889|ref|YP_002123133.1| transcriptional Regulator Cro/CI family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868776|ref|YP_002744724.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus] gi|225870268|ref|YP_002746215.1| DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|195974594|gb|ACG62120.1| transcriptional Regulator Cro/CI family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699672|emb|CAW93374.1| putative DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|225702052|emb|CAW99663.1| putative DNA-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 71 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y + RLK +R G++Q + L G+ T+S E+ P I A KI +V + ++ Sbjct: 3 YRLRNRLKELRARDGINQTQMAALAGVSRQTISLIERNEYTPSIIIAMKIAKVFNEPIEQ 62 Query: 172 IY 173 ++ Sbjct: 63 VF 64 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K++R + Q +MA A ++L E + SI A+ + + + ++ Sbjct: 7 NRLKELRARDGINQTQMAALAGVSRQTISLIERNEYTPSIIIAMKIAKVFNEPIEQVF 64 >gi|167746155|ref|ZP_02418282.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662] gi|167654670|gb|EDR98799.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662] Length = 180 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V IK +R+ + + ++ + +S + E G + +I + N ++ FD + Sbjct: 5 VAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDALT 64 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + L Sbjct: 65 VRPKTPYEIIKTADIEPL 82 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +R+ + +S KL G+ S L+ E+G P I KI K D + Sbjct: 7 KNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDAL 63 >gi|30020510|ref|NP_832141.1| transcriptional regulator [Bacillus cereus ATCC 14579] gi|229127815|ref|ZP_04256801.1| hypothetical protein bcere0015_22620 [Bacillus cereus BDRD-Cer4] gi|29896061|gb|AAP09342.1| Transcriptional regulator [Bacillus cereus ATCC 14579] gi|228655580|gb|EEL11432.1| hypothetical protein bcere0015_22620 [Bacillus cereus BDRD-Cer4] Length = 185 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LKSIR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|70727313|ref|YP_254229.1| hypothetical protein SH2314 [Staphylococcus haemolyticus JCSC1435] gi|68448039|dbj|BAE05623.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 61 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI++ RK +Q+ ++ +N EN ++ A L ++ + D ++ Sbjct: 3 NRIREYRKQKRISQEALSKELKVSRQTINAIENNKYDPTLTLAFKLAKLFDTTVDELF 60 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ RK K +SQ K L + T++ E + P + A K+ ++ +D ++ Sbjct: 1 MKNRIREYRKQKRISQEALSKELKVSRQTINAIENNKYDPTLTLAFKLAKLFDTTVDELF 60 >gi|331083559|ref|ZP_08332670.1| hypothetical protein HMPREF0992_01594 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403770|gb|EGG83322.1| hypothetical protein HMPREF0992_01594 [Lachnospiraceae bacterium 6_1_63FAA] Length = 70 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K+ R Q+E+ ++L E G S S+ AL + E + + I+ E Sbjct: 7 LKEYRARLGINQQELGKRVGASRQTISLIERGDYSPSVTLALKIAKECNATVEEIFRYEE 66 Query: 96 IDRR 99 + Sbjct: 67 DEDE 70 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK R G++Q E GK +G T+S E+G P + A KI + ++ Sbjct: 1 MPLYNSLKEYRARLGINQQELGKRVGASRQTISLIERGDYSPSVTLALKIAKECNATVEE 60 Query: 172 IYFGDEVIVP 181 I+ +E Sbjct: 61 IFRYEEDEDE 70 >gi|303246095|ref|ZP_07332376.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492491|gb|EFL52362.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +IK IR+A + TQ+++A + + E G + S+ L +I ++ Sbjct: 8 FGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLSKALDIPMAELF 67 Query: 92 DGEVIDRRYEDVT 104 E E++ Sbjct: 68 SLEEFRLAPEELK 80 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 39/87 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G ++KSIR+ + ++Q + L G+ + E+GR P + ++ + + ++ Sbjct: 8 FGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLSKALDIPMAELF 67 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKKDK 200 +E + +A + + +D+ Sbjct: 68 SLEEFRLAPEELKAILIRQIDSADEDR 94 >gi|291521363|emb|CBK79656.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 67 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ LK+ R+ + Q + +L+G+ T+ N E+G+ P +K A I +V ++ Sbjct: 1 MALLTNLKTYREKYNLKQADLAELVGVRRETIVNLERGKYNPSLKLAMDIARVFHTTVEE 60 Query: 172 IY 173 ++ Sbjct: 61 LF 62 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 24/58 (41%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +K R+ N Q ++A + E G + S++ A+ + + + + ++ Sbjct: 6 NLKTYREKYNLKQADLAELVGVRRETIVNLERGKYNPSLKLAMDIARVFHTTVEELFQ 63 >gi|293400046|ref|ZP_06644192.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306446|gb|EFE47689.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 134 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ +IK RK+N TQK++ E + +E G+ + + + N I+ Sbjct: 8 DIKDKIKSYRKSNGLTQKQLGEMIGSSEGMIRQYELGLRNPKMETLTKIANALNINLFDF 67 Query: 91 YDGEVIDRRYEDV 103 + + Sbjct: 68 VPLAEWESKLNGN 80 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K D I ++KS RK G++Q + G+++G + YE G P+++ KI Sbjct: 1 MKEGDKMDIKDKIKSYRKSNGLTQKQLGEMIGSSEGMIRQYELGLRNPKMETLTKIANAL 60 Query: 166 KKHL 169 +L Sbjct: 61 NINL 64 >gi|302555556|ref|ZP_07307898.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302473174|gb|EFL36267.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 191 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 28/86 (32%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++ +G R+ ++R + + E+A + S ++ E S + L Y Sbjct: 6 DLDAVDTRLGARLAELRAEHGWSLGELAERSGVSRSTLSRAERAETSPTAALLNRLCAVY 65 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRL 109 + + + + + Sbjct: 66 GRTMSQLLSEVEAEPAPVMRAPDQPV 91 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ARL +R + G S E + G+ STLS E+ T P ++ V + + + Sbjct: 16 ARLAELRAEHGWSLGELAERSGVSRSTLSRAERAETSPTAALLNRLCAVYGRTMSQLLS- 74 Query: 176 DEVIVPKSIKRA 187 + P + RA Sbjct: 75 EVEAEPAPVMRA 86 >gi|258515463|ref|YP_003191685.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779168|gb|ACV63062.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 116 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 K +G IK++R QK +A +S ++ FE+G + S + + Sbjct: 5 MKTIGANIKELRDNAGLGQKHIAGYLGVDQSLISKFESGERAISSDMLDKIAALFCCPV 63 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 LD IGA +K +R + G+ Q LG+ S +S +E G KI + Sbjct: 1 MILDMKTIGANIKELRDNAGLGQKHIAGYLGVDQSLISKFESGERAISSDMLDKIAALFC 60 Query: 167 KHLDWIYFGDE 177 + I D+ Sbjct: 61 CPVSVIASPDK 71 >gi|229195999|ref|ZP_04322751.1| Transcriptional regulator, Xre [Bacillus cereus m1293] gi|228587381|gb|EEK45447.1| Transcriptional regulator, Xre [Bacillus cereus m1293] Length = 404 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ +A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTALA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 92 DGEVID 97 + + ++ Sbjct: 63 EEDDVE 68 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + I+ K K +K D+ Sbjct: 65 DDVEIVALIQ--KMEPLIKANKCDE 87 >gi|170723125|ref|YP_001750813.1| putative phage repressor [Pseudomonas putida W619] gi|169761128|gb|ACA74444.1| putative phage repressor [Pseudomonas putida W619] Length = 259 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+ R TQ+++A ++A++ E+G S Y + + + +S W+ Sbjct: 2 KLSERIRAARLHAGLTQRDLAEKIGIAQTAISQLESGKTQRS-SYLMAIASTCGVSSAWL 60 Query: 91 YDG 93 +G Sbjct: 61 AEG 63 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+++ R G++Q + + +G+ + +S E G+T I W Sbjct: 1 MKLSERIRAARLHAGLTQRDLAEKIGIAQTAISQLESGKTQRS-SYLMAIASTCGVSSAW 59 Query: 172 IYFG 175 + G Sbjct: 60 LAEG 63 >gi|126726067|ref|ZP_01741909.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126705271|gb|EBA04362.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 130 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 26/90 (28%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R++ R A T K MA + +EN L +S W+ Sbjct: 19 FGDRLEAARDAKGLTIKGMAEKIGVSVRTIKAWENDRSVPRGNRVQMLAGMLNVSMVWLI 78 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 G T+ + + + + Sbjct: 79 SGTGNGTSNVAETHDRPIGVNDALGEIAQL 108 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + + D G RL++ R KG++ + +G+ T+ +E R++P Sbjct: 2 SLNDLEQNDYYNEDVATFGDRLEAARDAKGLTIKGMAEKIGVSVRTIKAWENDRSVPRGN 61 Query: 157 PARKIKQVTKKHLDWIYFG 175 + + + + W+ G Sbjct: 62 RVQMLAGMLNVSMVWLISG 80 >gi|77462199|ref|YP_351703.1| hypothetical protein RSP_6209 [Rhodobacter sphaeroides 2.4.1] gi|77386617|gb|ABA77802.1| hypothetical protein RSP_6209 [Rhodobacter sphaeroides 2.4.1] Length = 120 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 Y K + RIK +R+A TQ+ +A + S + + E + + +S Sbjct: 20 YTKPMALRIKQLREARGWTQEVLAARSGMSRSQLAMIERETRPANTIRLNAIAGALGVST 79 Query: 88 DWIYDGEVIDR 98 + +++ +R Sbjct: 80 EDLFESNPRER 90 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K +R+ +G +Q GM S L+ E+ I + ++ Sbjct: 28 IKQLREARGWTQEVLAARSGMSRSQLAMIERETRPANTIRLNAIAGALGVSTEDLF 83 >gi|332667847|ref|YP_004450635.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336661|gb|AEE53762.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 125 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK +R+ TQK++A + + +E G S + + + +S + Sbjct: 5 KNIKYLREVKKLTQKDIADAIEKSPQVFSQYEKGHVSPPLDVIVKISGFLNVSLQDLMFT 64 Query: 94 E 94 + Sbjct: 65 D 65 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +K +R+ K ++Q + + S YE+G P + KI L Sbjct: 1 MFLIKNIKYLREVKKLTQKDIADAIEKSPQVFSQYEKGHVSPPLDVIVKISGFLNVSLQD 60 Query: 172 IYFGDEVIVPKSIKR 186 + F D + I R Sbjct: 61 LMFTDLETGNQGISR 75 >gi|315640731|ref|ZP_07895833.1| cro/CI family transcriptional regulator [Enterococcus italicus DSM 15952] gi|315483486|gb|EFU73980.1| cro/CI family transcriptional regulator [Enterococcus italicus DSM 15952] Length = 285 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 7/105 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQK +A G +S ++ EN + ++ + I+ D + Sbjct: 8 LGEKIKRLRKTRKLTQKMLADGI-CSQSVLSRIENDLEIPNVLVLKKICVRLGITMDQMM 66 Query: 92 DGEVIDRRYED------VTNKKRLDPYAIGARLKSIRKDKGMSQI 130 E + D + A L++ + + Sbjct: 67 FAEFNEIHRMQRFFEKVNNALIHQDYEQMNALLRNAQIANQIYLD 111 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K +RK + ++Q + S LS E IP + +KI +D + F Sbjct: 10 EKIKRLRKTRKLTQKMLADGI-CSQSVLSRIENDLEIPNVLVLKKICVRLGITMDQMMFA 68 Query: 176 D 176 + Sbjct: 69 E 69 >gi|302562689|ref|ZP_07315031.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302480307|gb|EFL43400.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 277 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG ++ R +Q ++AI A+ V+L E G S L L ++ ++ Sbjct: 6 VGELLRQWRHRRRLSQLDLAIAADVSARHVSLVETGKSRPSADMVLRLADQLDVPL 61 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +G L+ R + +SQ++ + +S E G++ P ++ Sbjct: 1 MTMHTVGELLRQWRHRRRLSQLDLAIAADVSARHVSLVETGKSRPSADMVLRLADQLDVP 60 Query: 169 L 169 L Sbjct: 61 L 61 >gi|228984873|ref|ZP_04145043.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774823|gb|EEM23219.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 404 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ +A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTALA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 92 DGEVID 97 + + ++ Sbjct: 63 EEDDVE 68 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + I+ K K +K D+ Sbjct: 65 DDVEIVALIQ--KMEPLIKANKCDE 87 >gi|206972991|ref|ZP_03233913.1| dna-binding protein [Bacillus cereus AH1134] gi|229194134|ref|ZP_04320999.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206731875|gb|EDZ49075.1| dna-binding protein [Bacillus cereus AH1134] gi|228589350|gb|EEK47304.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 184 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++G +I RK T K +A A+ S ++ E G+ + S++ + I+ Sbjct: 5 NIGEKIMIFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISAALNIAL 61 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ IG ++ RK G++ +L + S LS E+G T P ++ + I Sbjct: 1 MNNINIGEKIMIFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISAALNIA 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 L + +F ++ I + + RA + Sbjct: 61 L-FNFFLEDTITEELVVRANQRKK 83 >gi|160915348|ref|ZP_02077560.1| hypothetical protein EUBDOL_01356 [Eubacterium dolichum DSM 3991] gi|158432739|gb|EDP11028.1| hypothetical protein EUBDOL_01356 [Eubacterium dolichum DSM 3991] Length = 177 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++K +R N+ T +E+A + + ++ E + S SI YL + Sbjct: 2 DIGAKLKALRLRNDLTLEEVASRSELTKGFISQVERNLTSPSISTLEYLLEALGTNLADF 61 Query: 91 YDGEVIDRRYEDVTNK--KRLDPYAIGARL 118 + E ++ + D Y I + Sbjct: 62 FKEEKEEQIVFQTQDFFESVKDEYTIEWII 91 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA+LK++R ++ E + +S E+ T P I + + +L Sbjct: 1 MDIGAKLKALRLRNDLTLEEVASRSELTKGFISQVERNLTSPSISTLEYLLEALGTNLAD 60 Query: 172 IYFGDEV 178 + ++ Sbjct: 61 FFKEEKE 67 >gi|119512219|ref|ZP_01631308.1| Transcriptional Regulator, XRE family protein [Nodularia spumigena CCY9414] gi|119463117|gb|EAW44065.1| Transcriptional Regulator, XRE family protein [Nodularia spumigena CCY9414] Length = 81 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 33/72 (45%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + ++ +G+ ++ R +Q+E+ + AN + ++ E G+ + S+ + L Sbjct: 1 MNESKQKILCALGSLVRKCRTEQGISQEELGLRANLDRTYISGVERGVRNPSLTALVSLA 60 Query: 81 NEYEISFDWIYD 92 N IS + + Sbjct: 61 NGLGISVSILLE 72 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 + K+ A+G+ ++ R ++G+SQ E G + + +S E+G P + + Sbjct: 1 MNESKQKILCALGSLVRKCRTEQGISQEELGLRANLDRTYISGVERGVRNPSLTALVSLA 60 Query: 163 QVTKKHLDWIYFGDEVIVPK 182 + + E+ K Sbjct: 61 NGLGISVSILLENLEIEADK 80 >gi|579178|emb|CAA26567.1| unnamed protein product [Bacillus phage phi105] Length = 147 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RIK IRK TQ ++A AN S + E + S+ + I I Sbjct: 6 VGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSAIV 65 Query: 92 DGEVIDRRYEDVTNKKRL-DPYAIGARLKS 120 E + + + N K D ++ Sbjct: 66 GEETLIKEEQAEYNSKEEKDIAKRMEEIRK 95 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G R+K+IRK++ ++Q++ + + S L++ E+ R P + + Sbjct: 1 MIIMTVGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQ 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + I G+E ++ + + +K+ Sbjct: 61 VSAIV-GEETLIKEEQAEYNSKEEKDIAKR 89 >gi|322434546|ref|YP_004216758.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321162273|gb|ADW67978.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 135 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 27/71 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ ++GT I+D R +Q ++ L ++ ENG S+ + + Sbjct: 16 VKSISMNIGTTIRDYRLQRGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAGALD 75 Query: 85 ISFDWIYDGEV 95 + + + Sbjct: 76 LQLSQFFAEDQ 86 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++ R +GMSQ + K G+ LS E G T+P ++ +KI L Sbjct: 21 MNIGTTIRDYRLQRGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAGALDLQLSQ 80 Query: 172 IYFGDEVIVPKS 183 + D+V S Sbjct: 81 FFAEDQVQKEVS 92 >gi|296118462|ref|ZP_06837041.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] gi|295968603|gb|EFG81849.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] Length = 469 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 VG+R++ +R+ + +Q +A S VN E+ + ++ L + + + Sbjct: 6 VGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVD 60 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +R+++ +SQ LG+ S ++ E + +I +V Sbjct: 1 MSKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKR 186 + D+ + I+ Sbjct: 61 ATFFSRDDDSRLLAEIQD 78 >gi|302552821|ref|ZP_07305163.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302470439|gb|EFL33532.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 447 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 11/117 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ +R TQ+++A + ++ E+G S +L ++FD + Sbjct: 10 IGRRVQRLRVERGLTQRQLAEPV-YTPAYISTLESGRVRPSDDALRHLAGRLGVAFDELA 68 Query: 92 DGEVID----------RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 G + + A L G+ + LLG+ Sbjct: 69 TGRSARLVTELRLRLTEAQRTLAVGETEAAAEQYAGLLDEAGTHGLPAEQAAALLGL 125 Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 DP IG R++ +R ++G++Q + + + + +S E GR P R + Sbjct: 6 DPGVIGRRVQRLRVERGLTQRQLAEPVY-TPAYISTLESGRVRPSDDALRHLAGRLGVAF 64 Query: 170 DWIYFG 175 D + G Sbjct: 65 DELATG 70 >gi|253580532|ref|ZP_04857797.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848262|gb|EES76227.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 105 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 5/97 (5%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ G+ IK++R+ TQ ++A ++ EN + S+R Y S D Sbjct: 4 ENYGSLIKNLRQKMGLTQNQVADSLGVTPGYISNVENNRTAMSLRILTYYARLTGCSLDS 63 Query: 90 IYDGEVIDRRYEDV-----TNKKRLDPYAIGARLKSI 121 + + + N +LD LK++ Sbjct: 64 LVGELDPEYSETAIDRKLYQNIIKLDVETKEKLLKTL 100 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 41/95 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ G+ +K++R+ G++Q + LG+ +SN E RT ++ ++T Sbjct: 1 METENYGSLIKNLRQKMGLTQNQVADSLGVTPGYISNVENNRTAMSLRILTYYARLTGCS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 LD + + ++ K Q+ K + K Sbjct: 61 LDSLVGELDPEYSETAIDRKLYQNIIKLDVETKEK 95 >gi|229161388|ref|ZP_04289372.1| hypothetical protein bcere0009_21770 [Bacillus cereus R309803] gi|228622094|gb|EEK78936.1| hypothetical protein bcere0009_21770 [Bacillus cereus R309803] Length = 185 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|197285329|ref|YP_002151201.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194682816|emb|CAR43084.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 111 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 32/70 (45%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 E + + +G + +R+ N+ T E+ N + ++ +E G+ I ++ N Sbjct: 14 SERKIFCHSIGYELFLLRQRNSMTGAELGKLLNISQQQISRYERGINKIPIDILFHILNI 73 Query: 83 YEISFDWIYD 92 ++IS ++ Sbjct: 74 FDISISDFFE 83 Score = 42.2 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 +++++ ++IG L +R+ M+ E GKLL + +S YE+G I I + Sbjct: 14 SERKIFCHSIGYELFLLRQRNSMTGAELGKLLNISQQQISRYERGINKIPIDILFHILNI 73 Query: 165 TKKHLDWIY 173 + + Sbjct: 74 FDISISDFF 82 >gi|115376643|ref|ZP_01463872.1| putative transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|310824998|ref|YP_003957356.1| lambda repressor-like, DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|115366324|gb|EAU65330.1| putative transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|309398070|gb|ADO75529.1| Lambda repressor-like, DNA-binding protein [Stigmatella aurantiaca DW4/3-1] Length = 119 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 25/75 (33%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ +G ++ R+ + TQ ++A E G S++ L Sbjct: 2 EQRLATIIGAAVRAARQRLDLTQADVAERVGIATEVYGRLERGHMLPSVKTLRRLCLVLN 61 Query: 85 ISFDWIYDGEVIDRR 99 S D + ++ Sbjct: 62 CSSDVLLGVTSPEKP 76 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 28/69 (40%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +++ R+ ++Q + + +G+ E+G +P +K R++ V D + Sbjct: 13 VRAARQRLDLTQADVAERVGIATEVYGRLERGHMLPSVKTLRRLCLVLNCSSDVLLGVTS 72 Query: 178 VIVPKSIKR 186 P + Sbjct: 73 PEKPVEVAE 81 >gi|39995474|ref|NP_951425.1| transcriptional regulator [Geobacter sulfurreducens PCA] gi|39982237|gb|AAR33698.1| transcriptional regulator, putative [Geobacter sulfurreducens PCA] gi|298504474|gb|ADI83197.1| transcriptional regulator, XRE family [Geobacter sulfurreducens KN400] Length = 306 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI--RYALYLRNEYEISFDWI 90 GT I+ IR+A TQ +A ++ +EN S+ A L E+S + I Sbjct: 20 GTTIRRIREAKRLTQLYVASVVGVTTDTISRWENNRY-PSVKRDNAEKLAQALEVSLEDI 78 Query: 91 YDG 93 Sbjct: 79 LRR 81 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK--PARKIKQVTKKHLDWIY 173 ++ IR+ K ++Q+ ++G+ T+S +E R P +K A K+ Q + L+ I Sbjct: 23 IRRIREAKRLTQLYVASVVGVTTDTISRWENNRY-PSVKRDNAEKLAQALEVSLEDIL 79 >gi|24376177|ref|NP_720221.1| transcriptional regulator, putative [Shewanella oneidensis MR-1] gi|24351222|gb|AAN57664.1|AE015902_6 transcriptional regulator, putative [Shewanella oneidensis MR-1] Length = 503 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK NN T ++++ S +++ E G S + ++ Sbjct: 7 LGTKIRNLRKRNNLTMEDLSARCIRVDASSAPSVSYLSMIERGKRVPSAEMLAVIATVFQ 66 Query: 85 ISFDWIYDGEVIDRRYEDVTNKK 107 DW D + ++ Sbjct: 67 KDVDWFLDDVPEESAITPDKGRR 89 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ +P + I V Sbjct: 5 HFLGTKIRNLRKRNNLTMEDLSARCIRVDASSAPSVSYLSMIERGKRVPSAEMLAVIATV 64 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K +DW D+V +I KG + Sbjct: 65 FQKDVDWFL--DDVPEESAITPDKGRR 89 >gi|27380892|ref|NP_772421.1| hypothetical protein bll5781 [Bradyrhizobium japonicum USDA 110] gi|27354058|dbj|BAC51046.1| bll5781 [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R +G +++ R+ +Q ++A A ++ E G + S L L + Sbjct: 11 ERSQPIHIGDHLREWRQRRRMSQLDLAGEAEISARHLSFVETGRAAPSRDMVLRLAERLD 70 Query: 85 ISF 87 + Sbjct: 71 VPL 73 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + + +R P IG L+ R+ + MSQ++ + LS E GR P Sbjct: 1 MNAHASTAHAERSQPIHIGDHLREWRQRRRMSQLDLAGEAEISARHLSFVETGRAAPSRD 60 Query: 157 PARKIKQVTKKHL 169 ++ + L Sbjct: 61 MVLRLAERLDVPL 73 >gi|113972178|ref|YP_735971.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|113886862|gb|ABI40914.1| transcriptional regulator, XRE family [Shewanella sp. MR-4] Length = 510 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK NN T ++++ S +++ E G S + ++ Sbjct: 14 LGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAEMLAVIATVFQ 73 Query: 85 ISFDWIYDGEVIDRRYEDVTNKK 107 DW D + ++ Sbjct: 74 KDVDWFLDDVPEESAITPDKGRR 96 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ +P + I V Sbjct: 12 HFLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAEMLAVIATV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K +DW D+V +I KG + Sbjct: 72 FQKDVDWFL--DDVPEESAITPDKGRR 96 >gi|114049428|ref|YP_739978.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|113890870|gb|ABI44921.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] Length = 510 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK NN T ++++ S +++ E G S + ++ Sbjct: 14 LGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAEMLAVIATVFQ 73 Query: 85 ISFDWIYDGEVIDRRYEDVTNKK 107 DW D + ++ Sbjct: 74 KDVDWFLDDVPEESAITPDKGRR 96 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ +P + I V Sbjct: 12 HFLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAEMLAVIATV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K +DW D+V +I KG + Sbjct: 72 FQKDVDWFL--DDVPEESAITPDKGRR 96 >gi|117922490|ref|YP_871682.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117614822|gb|ABK50276.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 510 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK NN T ++++ S +++ E G S + ++ Sbjct: 14 LGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAEMLAVIATVFQ 73 Query: 85 ISFDWIYDGEVIDRRYEDVTNKK 107 DW D + ++ Sbjct: 74 KDVDWFLDDVPEESAITPDKGRR 96 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK ++ + + + + S LS E+G+ +P + I V Sbjct: 12 HFLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAEMLAVIATV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K +DW D+V +I KG + Sbjct: 72 FQKDVDWFL--DDVPEESAITPDKGRR 96 >gi|77411971|ref|ZP_00788301.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae CJB111] gi|77161997|gb|EAO72978.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae CJB111] Length = 62 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+KD R K+Q +A +N+ EN + S+ + L + ++ Sbjct: 2 NRVKDYRLETKKSQLALAKEIGVSRQTINMIENNKYNPSLDLCIKLAKALGTDLNALF 59 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K R + SQ+ K +G+ T++ E + P + K+ + L+ +++ Sbjct: 1 MNRVKDYRLETKKSQLALAKEIGVSRQTINMIENNKYNPSLDLCIKLAKALGTDLNALFW 60 Query: 175 GD 176 D Sbjct: 61 ED 62 >gi|332530356|ref|ZP_08406301.1| transcriptional regulator, XRE family protein [Hylemonella gracilis ATCC 19624] gi|332040167|gb|EGI76548.1| transcriptional regulator, XRE family protein [Hylemonella gracilis ATCC 19624] Length = 286 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 4/98 (4%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF-- 87 +G +++ R+ + +Q +A+ A ++ E G L L +E +I Sbjct: 10 PAIGEQLRTWRERRHLSQLALAVQAEVSSRHLSFIETGRAQPGRELILRLADELDIPLRE 69 Query: 88 --DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 D + D L R Sbjct: 70 RNDLLIAAGFAPVFQARNFEDAAFDSLRAIVDLTLERH 107 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 AIG +L++ R+ + +SQ+ + + LS E GR P + ++ L Sbjct: 11 AIGEQLRTWRERRHLSQLALAVQAEVSSRHLSFIETGRAQPGRELILRLADELDIPL 67 >gi|330448085|ref|ZP_08311733.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492276|dbj|GAA06230.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 208 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 5/86 (5%) Query: 12 KSLQEYTLIITPEIRQYWKDV-----GTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +Q+ + E Q + + G R+K+IR ++ T +E + S ++ EN Sbjct: 4 EQIQDIYPSMRVEKEQSPQPIAPLKLGERLKEIRVSHGLTLEEASKLTGLARSTLSKIEN 63 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYD 92 S + + L I +++ Sbjct: 64 EQISPTFQAMQKLATGLAIDIPQLFE 89 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 R E + + + P +G RLK IR G++ E KL G+ STLS E + P Sbjct: 10 YPSMRVEKEQSPQPIAPLKLGERLKEIRVSHGLTLEEASKLTGLARSTLSKIENEQISPT 69 Query: 155 IKPARKIKQVTKKHLDWIY 173 + +K+ + ++ Sbjct: 70 FQAMQKLATGLAIDIPQLF 88 >gi|310640786|ref|YP_003945544.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245736|gb|ADO55303.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 127 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RI+ + K T+K + + G + + + + + + +S DW+ G Sbjct: 8 QRIEALIKDRGMTKKAFCEKLKISSGNLGDWRRGKTTPGTAHLIQISDFFNVSLDWLMKG 67 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 34/67 (50%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I R++++ KD+GM++ F + L + + L ++ +G+T P +I Sbjct: 1 MGDQTIYQRIEALIKDRGMTKKAFCEKLKISSGNLGDWRRGKTTPGTAHLIQISDFFNVS 60 Query: 169 LDWIYFG 175 LDW+ G Sbjct: 61 LDWLMKG 67 >gi|302528751|ref|ZP_07281093.1| predicted protein [Streptomyces sp. AA4] gi|302437646|gb|EFL09462.1| predicted protein [Streptomyces sp. AA4] Length = 403 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + + + +RI+ R+A N TQ + A + E G S S + L N Y Sbjct: 8 EQTESAQALASRIRGAREAANLTQAQAAAELGVSRPTLIAMEKGTRSVSPPELVKLANAY 67 Query: 84 EISFDWIYDGEVID 97 + Sbjct: 68 GRDVATLLRPTAPP 81 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ +R++ R+ ++Q + LG+ TL E+G K+ + + + Sbjct: 15 ALASRIRGAREAANLTQAQAAAELGVSRPTLIAMEKGTRSVSPPELVKLANAYGRDVATL 74 Query: 173 Y 173 Sbjct: 75 L 75 >gi|240948259|ref|ZP_04752645.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240297298|gb|EER47839.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 75 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + K++G IK R +Q+E+A A + + + E + ++ + Sbjct: 5 ERELFLKNLGLSIKLERVRRGLSQEELAERAGLHRTYIGMVERAERNITVVNLALIAKAL 64 Query: 84 EISFDWIYDGE 94 +S + + Sbjct: 65 GVSIGSLLGED 75 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 ++ L +G +K R +G+SQ E + G+ + + E+ + I Sbjct: 1 MNKAERELFLKNLGLSIKLERVRRGLSQEELAERAGLHRTYIGMVERAERNITVVNLALI 60 Query: 162 KQVTKKHLDWIYFGD 176 + + + D Sbjct: 61 AKALGVSIGSLLGED 75 >gi|239907891|ref|YP_002954632.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239797757|dbj|BAH76746.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 107 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +G RI+ +RK TQ E+A AN + E G + ++ L + Sbjct: 1 MANIHEILGKRIQSLRKKAGLTQLELAEKANLSLKHLGEIERGRGNPTLESLHNLSVALD 60 Query: 85 ISFDWIYDGEVI 96 IS ++D EV Sbjct: 61 ISLMKLFDLEVD 72 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++S+RK G++Q+E + + L E+GR P ++ + L ++ Sbjct: 10 KRIQSLRKKAGLTQLELAEKANLSLKHLGEIERGRGNPTLESLHNLSVALDISLMKLFDL 69 Query: 176 DEVIVPKSIKR 186 + ++ + Sbjct: 70 EVDLLTTKVTE 80 >gi|218709441|ref|YP_002417062.1| hypothetical protein VS_1450 [Vibrio splendidus LGP32] gi|218322460|emb|CAV18613.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 142 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG+ LK R K +SQ E +L+G+ T +E T P+ K+ +V D Sbjct: 19 MMIGSVLKEARALKNLSQPEVARLVGVTKQTYLKWENDTTEPKATQISKLAKVLGITSDE 78 Query: 172 IYFGD 176 I G Sbjct: 79 ICNGK 83 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G+ +K+ R N +Q E+A + +EN L I+ D I Sbjct: 21 IGSVLKEARALKNLSQPEVARLVGVTKQTYLKWENDTTEPKATQISKLAKVLGITSDEIC 80 Query: 92 DGEVIDR 98 +G++ + Sbjct: 81 NGKLDSK 87 >gi|148266629|ref|YP_001245572.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392669|ref|YP_001315344.1| hypothetical protein SaurJH1_0195 [Staphylococcus aureus subsp. aureus JH1] gi|257793983|ref|ZP_05642962.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258408610|ref|ZP_05680895.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421201|ref|ZP_05684128.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258438949|ref|ZP_05690040.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258444184|ref|ZP_05692518.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258447065|ref|ZP_05695215.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258448523|ref|ZP_05696636.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258455756|ref|ZP_05703711.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282893361|ref|ZP_06301594.1| transcriptional regulator [Staphylococcus aureus A8117] gi|282926312|ref|ZP_06333944.1| transcriptional regulator [Staphylococcus aureus A10102] gi|295405474|ref|ZP_06815284.1| transcriptional regulator [Staphylococcus aureus A8819] gi|296274946|ref|ZP_06857453.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus MR1] gi|297209290|ref|ZP_06925689.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244811|ref|ZP_06928691.1| transcriptional regulator [Staphylococcus aureus A8796] gi|300911288|ref|ZP_07128737.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|147739698|gb|ABQ47996.1| transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|149945121|gb|ABR51057.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257787955|gb|EEV26295.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840619|gb|EEV65078.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842625|gb|EEV67047.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257847825|gb|EEV71821.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257850443|gb|EEV74391.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854078|gb|EEV77031.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257858154|gb|EEV81042.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257861968|gb|EEV84741.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282591641|gb|EFB96712.1| transcriptional regulator [Staphylococcus aureus A10102] gi|282764047|gb|EFC04174.1| transcriptional regulator [Staphylococcus aureus A8117] gi|294969549|gb|EFG45568.1| transcriptional regulator [Staphylococcus aureus A8819] gi|296886223|gb|EFH25157.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178328|gb|EFH37575.1| transcriptional regulator [Staphylococcus aureus A8796] gi|300887467|gb|EFK82663.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R + + TQKE+A ++L E G+ + S+ + + + D I+ Sbjct: 3 NNLKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIFGE 62 Query: 94 EVI 96 + Sbjct: 63 KPQ 65 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R M+Q E +G+ T+S E+G P + + I V K+LD I+ Sbjct: 1 MKNNLKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIF 60 >gi|116871799|ref|YP_848580.1| DNA-binding domain-containing protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740677|emb|CAK19797.1| DNA-binding domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 67 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+IR +Q ++A+ ++ E G + S+ +L + + ++ + I+ Sbjct: 5 NKVKEIRTEKGISQTDLALTLEVSRQTIHAIEKGKYNPSLELSLKMAQYFHLTIEEIFKL 64 Query: 94 EVI 96 E Sbjct: 65 EEN 67 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K IR +KG+SQ + L + T+ E+G+ P ++ + K+ Q ++ Sbjct: 1 MKVINKVKEIRTEKGISQTDLALTLEVSRQTIHAIEKGKYNPSLELSLKMAQYFHLTIEE 60 Query: 172 IYFGDE 177 I+ +E Sbjct: 61 IFKLEE 66 >gi|21492787|ref|NP_659862.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|21467212|gb|AAM54875.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 161 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 41/122 (33%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 ++ + TS + + + + + + VG +I+ R +N + ++ G V Sbjct: 4 YVAAQVRTSRPAQAKQSDVARESVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQV 63 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 +E+G S L N +I ++G + +D Sbjct: 64 QKYESGKNRVSASMLYELANCLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEG 123 Query: 122 RK 123 R+ Sbjct: 124 RR 125 Score = 41.5 bits (96), Expect = 0.070, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +++ R +S + G +G+ + YE G+ ++ K + + G Sbjct: 36 QQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEG 95 >gi|311031078|ref|ZP_07709168.1| hypothetical protein Bm3-1_11106 [Bacillus sp. m3-13] Length = 71 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK+IR+ TQ +MA VN E + S+ AL L +++ + ++ Sbjct: 5 NHIKEIRQKRGITQIKMAEDLQITRQTVNAIEKNKYNPSLELALKLIAYFDVPIEEMFYL 64 Query: 94 EVIDR 98 E + Sbjct: 65 EETKK 69 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 36/67 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +K IR+ +G++QI+ + L + T++ E+ + P ++ A K+ ++ Sbjct: 1 MAVINHIKEIRQKRGITQIKMAEDLQITRQTVNAIEKNKYNPSLELALKLIAYFDVPIEE 60 Query: 172 IYFGDEV 178 +++ +E Sbjct: 61 MFYLEET 67 >gi|296329582|ref|ZP_06872068.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672779|ref|YP_003864450.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296153325|gb|EFG94188.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411022|gb|ADM36140.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 72 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 22/66 (33%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G S + IS D + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSAAIIQGAADVLNISADELAP 66 Query: 93 GEVIDR 98 E + Sbjct: 67 PEKDNE 72 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+++ RK KG +Q F K LG+ S L E+G +P + V D + Sbjct: 8 RRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSAAIIQGAADVLNISADEL 64 >gi|237741715|ref|ZP_04572196.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256845043|ref|ZP_05550501.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294785671|ref|ZP_06750959.1| DNA-binding protein [Fusobacterium sp. 3_1_27] gi|229429363|gb|EEO39575.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256718602|gb|EEU32157.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294487385|gb|EFG34747.1| DNA-binding protein [Fusobacterium sp. 3_1_27] Length = 182 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V IK IR+ N + ++A ++ +S + E G + ++ + N ++SF+ + Sbjct: 8 VSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTLI 67 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + + + + Sbjct: 68 AQPKLPYKVTKLAEIEPI 85 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +K IR++K +S + KL + S L+ E+G P + KI + + + Sbjct: 10 ENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTLI 67 >gi|221068872|ref|ZP_03544977.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220713895|gb|EED69263.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 131 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 34/64 (53%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +GT+++ R+ K+Q+++A A S ++ ENG + S+ L + I+ Sbjct: 25 KALGTKLRSYRELAQKSQEQLAHEAEVERSRISKLENGHINPSLLTLATLCHCLGITPAE 84 Query: 90 IYDG 93 +++G Sbjct: 85 LFEG 88 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G +L+S R+ SQ + + S +S E G P + + + Sbjct: 26 ALGTKLRSYRELAQKSQEQLAHEAEVERSRISKLENGHINPSLLTLATLCHCLGITPAEL 85 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + G +P + + + ++ +KS P Sbjct: 86 FEGVTATLPPASQGGALRRRNQAHA--EKSQAP 116 >gi|212704791|ref|ZP_03312919.1| hypothetical protein DESPIG_02855 [Desulfovibrio piger ATCC 29098] gi|212671753|gb|EEB32236.1| hypothetical protein DESPIG_02855 [Desulfovibrio piger ATCC 29098] Length = 193 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI+ +R +Q+ A + A+ +E G + L + N+ +I+ Sbjct: 1 MQKLGERIRHVRGR--MSQEAFAGLLGISKGALGGYERGENCPNADVVLTICNKCQINVS 58 Query: 89 WIYDG 93 W+ G Sbjct: 59 WLMSG 63 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G R++ +R MSQ F LLG+ L YE+G P I + ++ Sbjct: 1 MQKLGERIRHVRGR--MSQEAFAGLLGISKGALGGYERGENCPNADVVLTICNKCQINVS 58 Query: 171 WIYFG 175 W+ G Sbjct: 59 WLMSG 63 >gi|212383451|ref|YP_002302334.1| hypothetical protein pRJ6_005 [Staphylococcus aureus] gi|211907413|gb|AAK73548.2|AF241888_1 unknown [Staphylococcus aureus] Length = 82 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 IK RK N +Q+E+A ++L E G + +I+ + + ++ + ++ Sbjct: 16 NNIKHYRKEMNFSQQELANKVEVTRQTISLIELGKYNPTIKLCISIAKALQVDLNKLF 73 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 K+ + + +K RK+ SQ E + + T+S E G+ P IK I + + Sbjct: 7 KKEEFIIMINNIKHYRKEMNFSQQELANKVEVTRQTISLIELGKYNPTIKLCISIAKALQ 66 Query: 167 KHLDWIYFG 175 L+ +++ Sbjct: 67 VDLNKLFWE 75 >gi|163737060|ref|ZP_02144478.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis BS107] gi|161389664|gb|EDQ14015.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis BS107] Length = 205 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 22/67 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ RK T + + A ++ E + ++ + + E+ ++ Sbjct: 21 LGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNATPTLGTLAQIASALEVGLEYFI 80 Query: 92 DGEVIDR 98 Sbjct: 81 ATPKPSD 87 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 25/79 (31%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + +GA ++ RK G++ G+ LS E+ P Sbjct: 2 PQTSATPKPAKTRSSPGPMLGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNATPT 61 Query: 155 IKPARKIKQVTKKHLDWIY 173 + +I + L++ Sbjct: 62 LGTLAQIASALEVGLEYFI 80 >gi|163740517|ref|ZP_02147911.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis 2.10] gi|161386375|gb|EDQ10750.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 22/67 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ RK T + + A ++ E + ++ + + E+ ++ Sbjct: 21 LGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNATPTLGTLAQIASALEVGLEYFI 80 Query: 92 DGEVIDR 98 Sbjct: 81 ATPKPSD 87 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 25/79 (31%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + +GA ++ RK G++ G+ LS E+ P Sbjct: 2 PQTSATPKPAKTRSSPGPMLGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNATPT 61 Query: 155 IKPARKIKQVTKKHLDWIY 173 + +I + L++ Sbjct: 62 LGTLAQIASALEVGLEYFI 80 >gi|157690862|ref|YP_001485324.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157679620|gb|ABV60764.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 77 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G RI+ RK TQ+ A S + E G + + + + I+ + + Sbjct: 7 GRRIRAYRKLKGYTQEGFAKRLGISVSVLGEIERGNRLPTNQLVGQIADALNITVEEL 64 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ G R+++ RK KG +Q F K LG+ S L E+G +P + +I Sbjct: 1 MEKDVWGRRIRAYRKLKGYTQEGFAKRLGISVSVLGEIERGNRLPTNQLVGQIADALNIT 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 ++ + P + +GN Sbjct: 61 VEEL-------SPNLEEERRGNDV 77 >gi|116249754|ref|YP_765592.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254402|emb|CAK04035.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 152 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 1/90 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R+ +Q+ +A V +E G+ + S + + Sbjct: 13 VGARIRMRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIAEVLHTSPSFFF 72 Query: 92 DGEVIDRRYEDVTN-KKRLDPYAIGARLKS 120 + E + + +DP A R K Sbjct: 73 EQENSEPLTLQGLDLPANMDPVAEFLRTKE 102 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +V +D Y AR++ R+ GMSQ + +G+ + YE+G ++ Sbjct: 1 MNVKTANAIDSYVG-ARIRMRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQR 59 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIK 185 I +V +F E P +++ Sbjct: 60 IAEVLHTSPS-FFFEQENSEPLTLQ 83 >gi|88798742|ref|ZP_01114325.1| hypothetical protein MED297_16099 [Reinekea sp. MED297] gi|88778505|gb|EAR09697.1| hypothetical protein MED297_16099 [Reinekea sp. MED297] Length = 115 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 LK++R KG++Q E LG+ +T YE+G P + +K+ Q+ + Sbjct: 1 MQFHEHLKTLRLSKGLNQQETADQLGIAKNTYIGYEKGDREPTLTVLKKMAQMFGMTISE 60 Query: 172 I 172 + Sbjct: 61 L 61 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 21/57 (36%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +K +R + Q+E A ++ +E G ++ + + ++ + Sbjct: 5 EHLKTLRLSKGLNQQETADQLGIAKNTYIGYEKGDREPTLTVLKKMAQMFGMTISEL 61 >gi|271969826|ref|YP_003344022.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270513001|gb|ACZ91279.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 118 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Query: 22 TPEIRQYWKD-VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 +P W+ +G R++ +R + E A A ++ E G+ S + Sbjct: 20 SPAREPLWRHALGERLRGLRHERGEKLSETARRAGVSPQYLSEMERGVKEPSSEMIAAVA 79 Query: 81 NEYEISFDWI 90 +++ + Sbjct: 80 GALDVTLVDL 89 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 30/82 (36%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + ++ L +A+G RL+ +R ++G E + G+ LS E+G Sbjct: 8 LRPATDRTDPKSSPAREPLWRHALGERLRGLRHERGEKLSETARRAGVSPQYLSEMERGV 67 Query: 151 TIPEIKPARKIKQVTKKHLDWI 172 P + + L + Sbjct: 68 KEPSSEMIAAVAGALDVTLVDL 89 >gi|238062141|ref|ZP_04606850.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883952|gb|EEP72780.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 189 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 4/112 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ +R+ + +A A ++ ++ ENG + ++ + + + Sbjct: 22 VGARVRALREERGMSLSTLARLAGVGKATLSGLENGTRNPTLETLYAVTAQLGVPLTAAL 81 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA----RLKSIRKDKGMSQIEFGKLLGMP 139 G L A L +R G+ Q+ G+ Sbjct: 82 SGPAATPTVRGTAVSATLLEVFTEAEATFELYRMRVAPGVGQLSPAHQPGVT 133 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E + + D A+GAR++++R+++GMS +L G+ +TLS E G P Sbjct: 2 ESLAPTPGPAWEQAASDAGAVGARVRALREERGMSLSTLARLAGVGKATLSGLENGTRNP 61 Query: 154 EIKPARKIKQVTKKHL 169 ++ + L Sbjct: 62 TLETLYAVTAQLGVPL 77 >gi|187935228|ref|YP_001886792.1| hypothetical protein CLL_A2604 [Clostridium botulinum B str. Eklund 17B] gi|187723381|gb|ACD24602.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 64 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R A + +Q ++A + + E G + S++ + + + + I+ E Sbjct: 5 KLKSARAALDLSQGQLAEIVGVTRQTIGMIEAGKYNPSLQLCIAICKALGKTLNDIFWEE 64 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LKS R +SQ + +++G+ T+ E G+ P ++ I + K L+ I++ + Sbjct: 6 LKSARAALDLSQGQLAEIVGVTRQTIGMIEAGKYNPSLQLCIAICKALGKTLNDIFWEE 64 >gi|188587172|ref|YP_001918717.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351859|gb|ACB86129.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 192 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 9/91 (9%), Positives = 30/91 (32%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G IK +R+ + K+++ ++ E G S+ + E+ Sbjct: 14 EIGETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLWKISKALEVPLGSF 73 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ ++ ++ + + Sbjct: 74 FEELNREKVSVVRKEDRKQLDIPRSNVIYQL 104 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + ++ IG +K +R+ K + + + G+ LS E+G+ + KI + Sbjct: 6 SDTEINLSEIGETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLWKISKA 65 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSS 193 + L + +E+ K K ++ Sbjct: 66 LEVPLGSFF--EELNREKVSVVRKEDRKQ 92 >gi|169825863|ref|YP_001696021.1| MerR family transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168990351|gb|ACA37891.1| transcriptional regulator, MerR family [Lysinibacillus sphaericus C3-41] Length = 132 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 39/91 (42%), Gaps = 3/91 (3%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAI---GANQLESAVNLFENGMCSTSIRYALYLRN 81 + + K VG +++ IR + +Q+E+A + V+ E+G + ++ L Sbjct: 4 MSDFLKLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLETLMK 63 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLDPY 112 +I + +++ + + + LD + Sbjct: 64 ALDIPPEELFNFQKLSGVTDIEEKNLMLDIH 94 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGK---LLGMPNSTLSNYEQGRTIPEIKPARKI 161 N +G +L+ IR KG+SQ E + LG +SN E G++ + + Sbjct: 2 NHMSDFLKLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLETL 61 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAK 188 + + ++ ++ I+ Sbjct: 62 MKALDIPPEELFNFQKLSGVTDIEEKN 88 >gi|330816215|ref|YP_004359920.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] gi|327368608|gb|AEA59964.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] Length = 282 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 4/92 (4%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + + ++G ++ R +Q +++ A + ++ E+G L L Sbjct: 5 RSDTKAAASELGELLRYWRGVRGASQLGLSLEAGISQRQISFIESGRSVPGRDTLLTLAQ 64 Query: 82 EYEISFDW----IYDGEVIDRRYEDVTNKKRL 109 E+ + E N + + Sbjct: 65 ALEVPLRERNALLLAAGYAPVYAEPPWNAQEM 96 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 L+ R +G SQ+ G+ +S E GR++P + Q + L Sbjct: 17 ELLRYWRGVRGASQLGLSLEAGISQRQISFIESGRSVPGRDTLLTLAQALEVPL 70 >gi|322516069|ref|ZP_08069006.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322125484|gb|EFX96830.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 233 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++++ +RKA N TQ E+A E ++ +E A L + + +S ++ Sbjct: 28 SKLRKLRKAKNMTQSELAKKIKVSEKTISRWEKDKTLMKANKAKELADLFGVSVGYLLGY 87 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 Y+D + + L+ Sbjct: 88 IDDSEIYDDEVVIEPEKGMILAYSLERF 115 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 35/67 (52%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 + + ++L+ +RK K M+Q E K + + T+S +E+ +T+ + A+++ + Sbjct: 19 QSIRKVISMSKLRKLRKAKNMTQSELAKKIKVSEKTISRWEKDKTLMKANKAKELADLFG 78 Query: 167 KHLDWIY 173 + ++ Sbjct: 79 VSVGYLL 85 >gi|319939541|ref|ZP_08013901.1| prophage [Streptococcus anginosus 1_2_62CV] gi|319811527|gb|EFW07822.1| prophage [Streptococcus anginosus 1_2_62CV] Length = 159 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R+ +QKE+A+ +ENG A L + +E+S ++ Sbjct: 2 NRLKELRQDKKLSQKEIALELQVPLRTYQRWENGESQIKQEKAQQLADYFEVSIGYLLGY 61 Query: 94 EVI 96 ++ Sbjct: 62 DIQ 64 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK +R+DK +SQ E L +P T +E G + + + A+++ + + ++ Sbjct: 1 MNRLKELRQDKKLSQKEIALELQVPLRTYQRWENGESQIKQEKAQQLADYFEVSIGYLLG 60 Query: 175 GD 176 D Sbjct: 61 YD 62 >gi|300782969|ref|YP_003763260.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299792483|gb|ADJ42858.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 434 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +R TQ+E+A + E G S YL ++ D + Sbjct: 15 LGARIRRLRTGRGWTQRELAEP-GYDRGFLAKVETGSRPPSEEMLTYLAQRLGLTVDELR 73 Query: 92 DGEVI 96 G Sbjct: 74 FGRPP 78 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR++ +R +G +Q E + G L+ E G P + + Q +D + FG Sbjct: 17 ARIRRLRTGRGWTQRELAEP-GYDRGFLAKVETGSRPPSEEMLTYLAQRLGLTVDELRFG 75 >gi|296110769|ref|YP_003621150.1| dna-binding protein [Leuconostoc kimchii IMSNU 11154] gi|295832300|gb|ADG40181.1| dna-binding protein [Leuconostoc kimchii IMSNU 11154] Length = 66 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IKD R N +Q E+AI + +N EN S++ A L N S D ++ + Sbjct: 5 IKDFRSTNKISQAELAILTDVTRQTINAIENNKYDPSLKLAFDLANVLHTSVDELFVYNM 64 Query: 96 ID 97 + Sbjct: 65 EE 66 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K R +SQ E L + T++ E + P +K A + V +D ++ Sbjct: 1 MKNYIKDFRSTNKISQAELAILTDVTRQTINAIENNKYDPSLKLAFDLANVLHTSVDELF 60 >gi|239637339|ref|ZP_04678322.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239597071|gb|EEQ79585.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 67 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q ++A A V+L E + SI A+ + + + I+ Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAIKIARIFNEPVESIFII 62 Query: 94 EVID 97 E D Sbjct: 63 EEED 66 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G +Q + K G+ T+S E+ P I A KI ++ + ++ I+ Sbjct: 1 MRNRLKELRARDGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAIKIARIFNEPVESIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IIEEE 65 >gi|228912407|ref|ZP_04076097.1| hypothetical protein bthur0013_64760 [Bacillus thuringiensis IBL 200] gi|228847262|gb|EEM92226.1| hypothetical protein bthur0013_64760 [Bacillus thuringiensis IBL 200] Length = 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK++R + TQ +MA + EN + S+ AL + + + + + I+ Sbjct: 5 NNIKELRVQHEITQVQMAKDLQVTRQTIVAIENNHYNPSLELALKIAHYFNLKMEDIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ +K +R ++Q++ K L + T+ E P ++ A KI ++ Sbjct: 1 MAVQNNIKELRVQHEITQVQMAKDLQVTRQTIVAIENNHYNPSLELALKIAHYFNLKMED 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 >gi|326442721|ref|ZP_08217455.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 273 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 6/83 (7%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS----F 87 +G ++ +R+ T +E+A +S ++ ENG S S R L YE+ Sbjct: 1 MGLELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVDDHRIV 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLD 110 D + ++ + D Sbjct: 61 DSLM--QMAKDSRQQGWWHAFGD 81 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 L+ +R+ KGM+ E + L + S +S E GR + R + V + Sbjct: 5 LRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVD 55 >gi|167759110|ref|ZP_02431237.1| hypothetical protein CLOSCI_01457 [Clostridium scindens ATCC 35704] gi|167663228|gb|EDS07358.1| hypothetical protein CLOSCI_01457 [Clostridium scindens ATCC 35704] Length = 126 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++RK T ++ ++AV+ E G S + + E+ + + W+ G Sbjct: 5 ERVKEVRKTLGLTLEKFGDRLGIKKAAVSKIEKGENSLTDANIKSICREFSVDYMWLTTG 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGAR 117 E D +R+D G Sbjct: 65 EGEMFVETDDDFFERIDRIMAGEN 88 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+K +RK G++ +FG LG+ + +S E+G + I + W+ Sbjct: 4 NERVKEVRKTLGLTLEKFGDRLGIKKAAVSKIEKGENSLTDANIKSICREFSVDYMWLTT 63 Query: 175 GDEVI 179 G+ + Sbjct: 64 GEGEM 68 >gi|148358304|ref|YP_001249511.1| phage repressor [Legionella pneumophila str. Corby] gi|296105654|ref|YP_003617354.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99 Alcoy] gi|148280077|gb|ABQ54165.1| phage repressor [Legionella pneumophila str. Corby] gi|295647555|gb|ADG23402.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99 Alcoy] Length = 219 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGA-NQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G RI + RK T KE+ ++ + +E G + L ++S Sbjct: 5 KEIGKRIFEARKEKGLTLKELGELTGGLKQTRLTNWEQGTRAPGPEEIKLLAQALDVSPA 64 Query: 89 WIYD 92 ++ Sbjct: 65 FLMC 68 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 116 ARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ RK+KG++ E G+L G + + L+N+EQG P + + + Q ++ Sbjct: 9 KRIFEARKEKGLTLKELGELTGGLKQTRLTNWEQGTRAPGPEEIKLLAQALDVSPAFLMC 68 Query: 175 GDEVIVPKSIKRAKG 189 + + +KR K Sbjct: 69 ---LSDDQQVKRTKS 80 >gi|92115659|ref|YP_575388.1| XRE family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91798553|gb|ABE60928.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis X14] Length = 139 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG+R++ R +Q+++ V +E G + + ++ + Sbjct: 11 KHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQISDILQVPVSF 70 Query: 90 IYDG 93 +++G Sbjct: 71 LFEG 74 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R++ R GMSQ + G+ LG+ + YE+G ++I + + + +++ G Sbjct: 15 SRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQISDILQVPVSFLFEG 74 >gi|322834913|ref|YP_004214940.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321170114|gb|ADW75813.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 95 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 11 LKSLQEYTLIITPEIRQ-YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC 69 ++ + +Y L E + ++ +G RI + RK+ TQ+++A + + +E Sbjct: 1 MEIINKYNLGTMNERDEVFFLALGVRIAEARKSKGLTQRKLAEMLGIAQQTLAHYEVARL 60 Query: 70 STSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 S + L + + D + E Sbjct: 61 KLSASFLPELSRILDCTIDELLGMEEKKESSLQ 93 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%) Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI 155 + + + A+G R+ RK KG++Q + ++LG+ TL++YE R Sbjct: 5 NKYNLGTMNERDEVFFLALGVRIAEARKSKGLTQRKLAEMLGIAQQTLAHYEVARLKLSA 64 Query: 156 KPARKIKQVTKKHLDWIYFGDEVIVPK 182 ++ ++ +D + +E Sbjct: 65 SFLPELSRILDCTIDELLGMEEKKESS 91 >gi|291534560|emb|CBL07672.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 144 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 7/123 (5%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 ++G RI RK N+ T +E+A +S + +E G+ + + + ++ +W Sbjct: 5 EIGYRIYMARKENHATLEEVAKKVGLAKSTIQRYEKGLINDVKLPNIQSIAKALNVNPNW 64 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 I G+ + + K +D Y K + +L T S Sbjct: 65 II-GKSEEMHVQTQIYPKIIDYYNQLND-----FGKKEATKRVEELTHFSQYTESQILNA 118 Query: 150 RTI 152 Sbjct: 119 AHE 121 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKK 167 + IG R+ RK+ + E K +G+ ST+ YE+G ++ + I + Sbjct: 1 MTNVEIGYRIYMARKENHATLEEVAKKVGLAKSTIQRYEKGLINDVKLPNIQSIAKALNV 60 Query: 168 HLDWIY-FGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 + +WI +E+ V I + ++ + KK + Sbjct: 61 NPNWIIGKSEEMHVQTQIYPKIIDYYNQLNDFGKKEA 97 >gi|229117990|ref|ZP_04247350.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228665439|gb|EEL20921.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] Length = 190 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|254388231|ref|ZP_05003467.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294817295|ref|ZP_06775937.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197701954|gb|EDY47766.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294322110|gb|EFG04245.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 389 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISF 87 G ++K++RK +Q+++A + S + E G + + L + +I Sbjct: 6 GRKLKEVRKRRGLSQRDLAKASGVSLSLIRKLEQGDYGTPMLETLRKLASVLDIPT 61 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLD 170 A G +LK +RK +G+SQ + K G+ S + EQG P ++ RK+ V Sbjct: 3 NATGRKLKEVRKRRGLSQRDLAKASGVSLSLIRKLEQGDYGTPMLETLRKLASVLDIPTM 62 Query: 171 WIYFGD 176 + D Sbjct: 63 CLVGED 68 >gi|160947555|ref|ZP_02094722.1| hypothetical protein PEPMIC_01490 [Parvimonas micra ATCC 33270] gi|158446689|gb|EDP23684.1| hypothetical protein PEPMIC_01490 [Parvimonas micra ATCC 33270] Length = 212 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 1/77 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWIY 91 G R+K++R+ N T ++ + + +EN + + I + L Y S I Sbjct: 4 GERLKELRQKANLTLQDAGELIGTSKQNLFKYENDIITNIPIDRLVKLAEIYNSSPIEIL 63 Query: 92 DGEVIDRRYEDVTNKKR 108 E Sbjct: 64 GWEHYSNIPNSTKASIY 80 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHLD 170 G RLK +R+ ++ + G+L+G L YE T I K+ ++ Sbjct: 1 MTTGERLKELRQKANLTLQDAGELIGTSKQNLFKYENDIITNIPIDRLVKLAEIYNSSPI 60 Query: 171 WIY 173 I Sbjct: 61 EIL 63 >gi|3318590|dbj|BAA31573.1| A2-5a orf21; hypothetical protein [Bacillus sp.] Length = 184 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IRK + ++++ + ++ + E G S ++ + N + Sbjct: 1 MEEIHIILARNLKAIRKKEKLSLEKVSELSGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + L Sbjct: 61 VSFTSLINTPQPDAKVVLRNEIQVL 85 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + LK+IRK + +S + +L G+ + + E+G + P + KI K Sbjct: 5 HIILARNLKAIRKKEKLSLEKVSELSGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 171 WIY 173 + Sbjct: 65 SLI 67 >gi|223933860|ref|ZP_03625826.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223897478|gb|EEF63873.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 74 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+D+R+ N+ TQK +A + + E G + + L Y +S D+I Sbjct: 3 QRIRDLREDNDFTQKFVAEKLSFSSTNYAKIERGEVVLTAEILIKLSALYNVSTDYIL 60 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ +R+D +Q + L ++ + E+G + + K+ + D+I Sbjct: 1 MYQRIRDLREDNDFTQKFVAEKLSFSSTNYAKIERGEVVLTAEILIKLSALYNVSTDYIL 60 >gi|325660973|ref|ZP_08149600.1| hypothetical protein HMPREF0490_00332 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472480|gb|EGC75691.1| hypothetical protein HMPREF0490_00332 [Lachnospiraceae bacterium 4_1_37FAA] Length = 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK+ R + Q+E+A + E G + S+ A + + ++ + I+ Sbjct: 2 IKNRIKEYRARFDMKQEELAAKVGVRRETIGNLEKGKYNPSLVLAWNIAKTFHVTIEEIF 61 Query: 92 DGEV 95 E Sbjct: 62 TVEE 65 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R+K R M Q E +G+ T+ N E+G+ P + A I + ++ I Sbjct: 1 MIKNRIKEYRARFDMKQEELAAKVGVRRETIGNLEKGKYNPSLVLAWNIAKTFHVTIEEI 60 Query: 173 YFGDE 177 + +E Sbjct: 61 FTVEE 65 >gi|313897138|ref|ZP_07830683.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312958066|gb|EFR39689.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 130 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KD+ +RI ++R + + S++N E G + S + + E+ +++ Sbjct: 1 MKDINSRIAEVRATLELSMRAFGEKLGISGSSINAVEKGHNNPSDQTVKLICKEFNVNYL 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 W+ +G+ D LD A+ L I Sbjct: 61 WLTEGKGEMFEAPD----SALDDLAMQYDLNEI 89 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +R+ +R +S FG+ LG+ S+++ E+G P + + I + + Sbjct: 1 MKDINSRIAEVRATLELSMRAFGEKLGISGSSINAVEKGHNNPSDQTVKLICKEFNVNYL 60 Query: 171 WIYFGDEVIVP 181 W+ G + Sbjct: 61 WLTEGKGEMFE 71 >gi|271962500|ref|YP_003336696.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505675|gb|ACZ83953.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 175 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 +G I++ R + +++A A ++ E G+ S + IS Sbjct: 9 IGEYIREQRTHAKISLRQLAAAAGVSNPYLSQIERGLRKPSAEILNQIAKGLHIS 63 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 19/53 (35%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ R +S + G+ N LS E+G P + +I + Sbjct: 11 EYIREQRTHAKISLRQLAAAAGVSNPYLSQIERGLRKPSAEILNQIAKGLHIS 63 >gi|228930605|ref|ZP_04093586.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829001|gb|EEM74657.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 114 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 24/68 (35%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G IK RK TQ++ A + +E + L + + IS D Sbjct: 1 MKTLGQTIKFFRKKTGLTQEDFADKYGFSHGQMKHWETDRHQPDVESIKTLSSIFRISTD 60 Query: 89 WIYDGEVI 96 + E Sbjct: 61 TLLGFENE 68 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 31/74 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G +K RK G++Q +F G + + ++E R P+++ + + + + D Sbjct: 1 MKTLGQTIKFFRKKTGLTQEDFADKYGFSHGQMKHWETDRHQPDVESIKTLSSIFRISTD 60 Query: 171 WIYFGDEVIVPKSI 184 + + + Sbjct: 61 TLLGFENEQDDALL 74 >gi|225873288|ref|YP_002754747.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225792943|gb|ACO33033.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 128 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 T PE + DV ++DIR +Q+++A + ++ ENG ++ Sbjct: 3 TPPAAPEEKP-GIDVARAVRDIRLGRKLSQRQLATRMQVPRTYISKIENGKAVPTLSSLE 61 Query: 78 YLRNEYEISF 87 L E++ Sbjct: 62 RLAEALEVNI 71 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 28/56 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ IR + +SQ + + +P + +S E G+ +P + ++ + + ++ + Sbjct: 20 VRDIRLGRKLSQRQLATRMQVPRTYISKIENGKAVPTLSSLERLAEALEVNICALL 75 >gi|169334235|ref|ZP_02861428.1| hypothetical protein ANASTE_00633 [Anaerofustis stercorihominis DSM 17244] gi|169258952|gb|EDS72918.1| hypothetical protein ANASTE_00633 [Anaerofustis stercorihominis DSM 17244] Length = 75 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 32/70 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++++RK Q+ A + ++ ENG + S+ A + + ++ + ++ Sbjct: 6 NKVEELRKKIGLNQENFAKQLSVSRQTISSIENGKYNPSLELAFEIADFFDKRIEEVFIH 65 Query: 94 EVIDRRYEDV 103 E D ++E Sbjct: 66 ERKDDKHEKE 75 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + +++ +RK G++Q F K L + T+S+ E G+ P ++ A +I K ++ Sbjct: 1 MLYLENKVEELRKKIGLNQENFAKQLSVSRQTISSIENGKYNPSLELAFEIADFFDKRIE 60 Query: 171 WIYFGD 176 ++ + Sbjct: 61 EVFIHE 66 >gi|196043612|ref|ZP_03110850.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225864505|ref|YP_002749883.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184749|ref|ZP_04311948.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1] gi|196025921|gb|EDX64590.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225786797|gb|ACO27014.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228598763|gb|EEK56384.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1] Length = 66 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI R TQ+E+A + E + S+ A + N +E S ++ Sbjct: 2 LHNRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITDVF 61 Query: 92 DGEVI 96 D + Sbjct: 62 DYQEE 66 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+ R +KG +Q E K +G+ T++ E+ + P + A KI V +K + + Sbjct: 1 MLHNRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITDV 60 Query: 173 YFGDEV 178 + E Sbjct: 61 FDYQEE 66 >gi|163868998|ref|YP_001610228.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018675|emb|CAK02233.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 130 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R + +QK + + +E G+ S L + + ++ + Y Sbjct: 20 IGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQKLQVPISFFY 79 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGAR--LKSIRKDKGMSQIEF 132 D ++ + D Y+ LK+ R+ + Q Sbjct: 80 ADLLTTDIATKENLSHCNQDTYSEKEHALLKNFRELQPKKQKAI 123 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 + N +D +IGAR++ R G+SQ G LG+ + YE+G Sbjct: 2 QTKNPHFQTKNSNFVDT-SIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVS 60 Query: 155 IKPARKIKQVTKKHLDWIY 173 +I Q + + + Y Sbjct: 61 AGCLLEIAQKLQVPISFFY 79 >gi|73670782|ref|YP_306797.1| transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72397944|gb|AAZ72217.1| transcriptional regulator, Hth-3 family [Methanosarcina barkeri str. Fusaro] Length = 68 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK+ R ++ TQ+ +A + E G + S++ A + + D ++ E Sbjct: 4 RIKEFRARHDLTQEALAKMVGVRRETIVFLEKGKYNPSLKLAYRISRCLNATIDELFIFE 63 Query: 95 VIDRR 99 D + Sbjct: 64 DTDFK 68 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R ++Q K++G+ T+ E+G+ P +K A +I + +D ++ Sbjct: 1 MKTRIKEFRARHDLTQEALAKMVGVRRETIVFLEKGKYNPSLKLAYRISRCLNATIDELF 60 Query: 174 FGDEV 178 ++ Sbjct: 61 IFEDT 65 >gi|312873589|ref|ZP_07733636.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311090842|gb|EFQ49239.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] Length = 228 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 7/101 (6%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ G I R+ NN T +E+ + +S+++ + +G I + N + Sbjct: 1 MKESKIIFGQMIDYFRRQNNLTMEELGQKLGKAKSSISRWVSGERYPKIEEIEQIANFFN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 + G + + D + +L IRK K Sbjct: 61 TDIYTLIFGFNYNEDSKS-------DLLTVYNQLTDIRKHK 94 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G + R+ ++ E G+ LG S++S + G P+I+ +I + + Sbjct: 8 FGQMIDYFRRQNNLTMEELGQKLGKAKSSISRWVSGERYPKIEEIEQIANFFNTDIYTLI 67 Query: 174 FG 175 FG Sbjct: 68 FG 69 >gi|296284526|ref|ZP_06862524.1| XRE family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 64 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K R+ G SQ E + LG+ T++ E + P + A ++ ++ + ++ D Sbjct: 1 MKHYREGTGWSQGELARRLGVSRQTINAVETDKYDPSLPLALRMAKLFAVDVPDLFIDD 59 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +K R+ +Q E+A +N E S+ AL + + + ++ + Sbjct: 1 MKHYREGTGWSQGELARRLGVSRQTINAVETDKYDPSLPLALRMAKLFAVDVPDLFIDD 59 >gi|228908158|ref|ZP_04072006.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228851576|gb|EEM96382.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] Length = 96 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RK NN T +E A A S ++ E G + S+ + + ++ Sbjct: 6 LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 Query: 92 DGEVIDRRYEDVTNKKR 108 ++ ++ Sbjct: 66 INDIDTDSLISKRKDRK 82 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180 RK M+ EF + G+ S +S E+G P + I + L ++ D + Sbjct: 13 YRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLFIND-IDT 71 Query: 181 PKSIKRAKGNQS 192 I + K + Sbjct: 72 DSLISKRKDRKK 83 >gi|163745989|ref|ZP_02153348.1| helix-turn-helix domain protein, putative [Oceanibulbus indolifex HEL-45] gi|161380734|gb|EDQ05144.1| helix-turn-helix domain protein, putative [Oceanibulbus indolifex HEL-45] Length = 133 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 4/119 (3%) Query: 21 ITPEIRQYWKD---VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 +T EI Y + G R+ R+ TQ +A + + +E + Sbjct: 1 MTDEIDWYGPEAATFGDRVAAAREQTGMTQAMLAKRLGVRLATLRGWEEDLSEPRANRLS 60 Query: 78 YLRNEYEISFDWIYDGEVIDRRYED-VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 L +S W+ +GE D +R+D + A ++++R D GKL Sbjct: 61 MLAGLLNVSMMWLINGEGEGVDAPDAGETARRVDLEEVLADMRALRTDLLKKAETVGKL 119 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 + + R+ GM+Q K LG+ +TL +E+ + P + + + W+ G+ Sbjct: 19 VAAAREQTGMTQAMLAKRLGVRLATLRGWEEDLSEPRANRLSMLAGLLNVSMMWLINGE 77 >gi|157155496|ref|YP_001461935.1| putative repressor protein [Escherichia coli E24377A] gi|191166562|ref|ZP_03028391.1| putative repressor protein [Escherichia coli B7A] gi|218694199|ref|YP_002401866.1| Regulatory protein CI from bacteriophage origin [Escherichia coli 55989] gi|218703832|ref|YP_002411351.1| regulatory protein CI from bacteriophage origin [Escherichia coli UMN026] gi|300819564|ref|ZP_07099758.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|300895848|ref|ZP_07114428.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|331676460|ref|ZP_08377157.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli H591] gi|157077526|gb|ABV17234.1| putative repressor protein [Escherichia coli E24377A] gi|190903367|gb|EDV63087.1| putative repressor protein [Escherichia coli B7A] gi|218350931|emb|CAU96632.1| Regulatory protein CI from bacteriophage origin [Escherichia coli 55989] gi|218430929|emb|CAR11803.1| Regulatory protein CI from bacteriophage origin [Escherichia coli UMN026] gi|300360234|gb|EFJ76104.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|300527890|gb|EFK48952.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|320196986|gb|EFW71605.1| Regulatory protein CI from bacteriophage origin [Escherichia coli WV_060327] gi|320643661|gb|EFX12798.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H- str. 493-89] gi|320648981|gb|EFX17575.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H- str. H 2687] gi|320665037|gb|EFX32141.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H7 str. LSU-61] gi|323153453|gb|EFZ39708.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|325497847|gb|EGC95706.1| putative repressor protein [Escherichia fergusonii ECD227] gi|331075953|gb|EGI47250.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli H591] Length = 251 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R A TQK + ++A+ E G + + + + + N + +W+ Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTK-IVEIANALGVRAEWLS 85 Query: 92 DG 93 G Sbjct: 86 SG 87 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R +G++Q G L+G+ + + E G+ K I +W+ G Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVE-IANALGVRAEWLSSG 87 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + +++ + S K Sbjct: 88 VGNMSDSTVQPIQSTVSHSK 107 >gi|254831673|ref|ZP_05236328.1| transcription regulator [Listeria monocytogenes 10403S] Length = 423 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+IRK T K++A G + ENG+ S+ +++ +I + + Sbjct: 4 IGLRIKNIRKEKKLTLKDVAQGI-ISVPYLANIENGIKVASLETLIHIARRLDIPEEILL 62 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR 117 E + R + + Sbjct: 63 MSEDEENRALLKELDEIFELLVCSNP 88 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+IRK+K ++ + + + + L+N E G + ++ I + + + ++ Sbjct: 8 IKNIRKEKKLTLKDVAQGI-ISVPYLANIENGIKVASLETLIHIARRLDIPEEILLMSED 66 Query: 178 VIVPKSIKR 186 +K Sbjct: 67 EENRALLKE 75 >gi|134045852|ref|YP_001097338.1| XRE family transcriptional regulator [Methanococcus maripaludis C5] gi|132663477|gb|ABO35123.1| transcriptional regulator, XRE family [Methanococcus maripaludis C5] Length = 66 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 RIK+ R + TQ+E+ ++ E G + S++ A + + + D ++ E Sbjct: 4 RIKEYRAKYDMTQEELGKIVGVRRETISFLEKGKYNPSLKLAHSISKALDTTIDELFIFE 63 Query: 95 VID 97 + Sbjct: 64 DDE 66 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K R M+Q E GK++G+ T+S E+G+ P +K A I + +D ++ Sbjct: 1 MKTRIKEYRAKYDMTQEELGKIVGVRRETISFLEKGKYNPSLKLAHSISKALDTTIDELF 60 Query: 174 FGDEV 178 ++ Sbjct: 61 IFEDD 65 >gi|91224263|ref|ZP_01259526.1| hypothetical protein V12G01_03230 [Vibrio alginolyticus 12G01] gi|91191174|gb|EAS77440.1| hypothetical protein V12G01_03230 [Vibrio alginolyticus 12G01] Length = 518 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 51/181 (28%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK N+ T ++++ S +++ E G SI + ++ Sbjct: 14 LGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVFQ 73 Query: 85 ISFDWIYDGEVI----------------DRRYEDVTNKKRLDPYAIGARLKS-------- 120 W D E + AI L Sbjct: 74 KDPAWFLDDEPELEAITPNKGNRGGISGMALEPSFLFSNDILQIAIPEMLSQTGITGRQF 133 Query: 121 ----IRKDKGMSQ------IEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IR + Q + +G+ ++ I + + Sbjct: 134 AHLLIRAHQENHQNHFPDLERAAEEIGLKR----------LNLSVEDLVDIAKSMGLDIR 183 Query: 171 W 171 W Sbjct: 184 W 184 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK+ ++ + + + + S LS E+G+ +P I I +V Sbjct: 12 HFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K W D+ ++I KGN+ Sbjct: 72 FQKDPAWFL--DDEPELEAITPNKGNR 96 >gi|114564571|ref|YP_752085.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] gi|114335864|gb|ABI73246.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] Length = 64 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + TQ ++A + VN E G S+ A +++ + I++ Sbjct: 3 NRLKVLRAEQDLTQAQLADLLDVSRQTVNAIETGKFDPSLPLAFKAARLFKLPIESIFED 62 Query: 94 EV 95 E Sbjct: 63 EQ 64 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 34/64 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ ++Q + LL + T++ E G+ P + A K ++ K ++ I+ Sbjct: 1 MKNRLKVLRAEQDLTQAQLADLLDVSRQTVNAIETGKFDPSLPLAFKAARLFKLPIESIF 60 Query: 174 FGDE 177 ++ Sbjct: 61 EDEQ 64 >gi|119387639|ref|YP_918673.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119378214|gb|ABL72977.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 184 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG I+ +RK+ T E+A + ++ E G + S+ + + ++ + + Sbjct: 5 VGEDIRSLRKSRGMTLLELAGDVGRSVGWLSQVERGQTTPSVHDLGQISDRLGVNISFFF 64 Query: 92 D 92 Sbjct: 65 R 65 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +G ++S+RK +GM+ +E +G LS E+G+T P + +I ++ + Sbjct: 3 HHVGEDIRSLRKSRGMTLLELAGDVGRSVGWLSQVERGQTTPSVHDLGQISDRLGVNISF 62 Query: 172 IY 173 + Sbjct: 63 FF 64 >gi|332527576|ref|ZP_08403623.1| helix-turn-helix domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332111979|gb|EGJ11956.1| helix-turn-helix domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 277 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 2/106 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLES-AVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ + R+ +Q E A + ++L E+G + L Y + D++ Sbjct: 52 GRRLAEAREDAGLSQTEAAHRLGYSQQVQLSLMESGQRMPPLDVLLACTQLYGTTMDFL- 110 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 G D + +R + A L+ + + + + + +G Sbjct: 111 CGLAPDSDRDPALGIQRQLAAGLSAELRRVVEAMSSASVNVARAIG 156 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNS-TLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL R+D G+SQ E LG LS E G+ +P + Q+ +D++ Sbjct: 53 RRLAEAREDAGLSQTEAAHRLGYSQQVQLSLMESGQRMPPLDVLLACTQLYGTTMDFL 110 >gi|325958946|ref|YP_004290412.1| XRE family transcriptional regulator [Methanobacterium sp. AL-21] gi|325330378|gb|ADZ09440.1| transcriptional regulator, XRE family [Methanobacterium sp. AL-21] Length = 64 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +LK R ++Q + K + + T+ + E+ + P + A KI + H++ I+ Sbjct: 1 MKNKLKVYRAMNDLTQEDLAKEIKVTRQTIISIEKQKYDPSLTLAFKIAKFFNVHIEDIF 60 Query: 174 FGDE 177 F +E Sbjct: 61 FDEE 64 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N+ TQ+++A + E S+ A + + + + I+ Sbjct: 3 NKLKVYRAMNDLTQEDLAKEIKVTRQTIISIEKQKYDPSLTLAFKIAKFFNVHIEDIFFD 62 Query: 94 EV 95 E Sbjct: 63 EE 64 >gi|324990700|gb|EGC22636.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] gi|327458798|gb|EGF05146.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 225 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 3/92 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N TQ + + +ENG+ + L ++ ++ D Sbjct: 5 EKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 94 EV--IDRRYEDVTNKKRLDPYAIGARLKSIRK 123 +KK +D A L+ RK Sbjct: 65 TSTLYTYPLLTPPHKKEVDQLAS-QLLERQRK 95 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R + ++Q + LG+ T S +E G P K R++ K ++ Sbjct: 1 MFSHEKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENY 60 Query: 172 IY 173 Sbjct: 61 FV 62 >gi|269215841|ref|ZP_06159695.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269130791|gb|EEZ61867.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 72 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 25/63 (39%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R A + +Q ++A + L E G + ++ + + + + ++ E Sbjct: 8 RMKAARAARDMSQGDLAAAVGATRQTIGLIEAGGYNPTLNLCIAICRALGCTLNDLFWIE 67 Query: 95 VID 97 Sbjct: 68 GKS 70 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K+ R + MSQ + +G T+ E G P + I + L+ +++ + Sbjct: 9 MKAARAARDMSQGDLAAAVGATRQTIGLIEAGGYNPTLNLCIAICRALGCTLNDLFWIE 67 >gi|254420054|ref|ZP_05033778.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186231|gb|EDX81207.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 142 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 25/86 (29%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + VG R+++ R TQ +A V +E G S + ++ + Sbjct: 19 RHVGRRVQEKRLDLGLTQTALARAVGVSFQQVQKYEKGANRVSASKLFEMAEFMKVDIPF 78 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIG 115 + G + D Sbjct: 79 FFQGFHDAQPGVGEEEAPGFDHEHKP 104 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ R D G++Q + +G+ + YE+G ++ + K + + + G Sbjct: 23 RRVQEKRLDLGLTQTALARAVGVSFQQVQKYEKGANRVSASKLFEMAEFMKVDIPFFFQG 82 >gi|168204638|ref|ZP_02630643.1| cI2009 [Clostridium perfringens E str. JGS1987] gi|170663751|gb|EDT16434.1| cI2009 [Clostridium perfringens E str. JGS1987] Length = 78 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 20 IITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 I+ + + ++VGT IK R + K+++ + +N E G+ S L Sbjct: 4 ILEEYLEETIQNVGTNIKRRRLKKGWSLKQLSKKSGVGIKTINDIELGINKPSKNTLYKL 63 Query: 80 RNEYEISFDWIYDGE 94 + I+ D + G+ Sbjct: 64 SRTFGITIDKLVYGK 78 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K R KG S + K G+ T+++ E G P K+ + +D + +G Sbjct: 19 NIKRRRLKKGWSLKQLSKKSGVGIKTINDIELGINKPSKNTLYKLSRTFGITIDKLVYGK 78 >gi|170725490|ref|YP_001759516.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810837|gb|ACA85421.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 182 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +K +RK +Q+E+A A S +++ E S S+ + + +S Sbjct: 2 DIGASLKAVRKIKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDF 61 Query: 91 YDGEVI 96 + E Sbjct: 62 FSMEDT 67 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 39/80 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IGA LK++RK KG+SQ E K G+ NST+S E+ P + +K+ L Sbjct: 1 MDIGASLKAVRKIKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVD 60 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 + ++ ++ + ++ Sbjct: 61 FFSMEDTAASEAKVVYRSDE 80 >gi|54027183|ref|YP_121425.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018691|dbj|BAD60061.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 136 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G I+ R+A + +++A A ++ E G+ + S + +S + + Sbjct: 16 DIGGFIRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEVLAQIAKALRVSSEVL 75 Query: 91 Y 91 Y Sbjct: 76 Y 76 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ R+ +S + L G+ N LS E+G P + +I + + + +Y Sbjct: 20 FIRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEVLAQIAKALRVSSEVLY 76 >gi|326692276|ref|ZP_08229281.1| Cro/CI family transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 122 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 RIK++R TQ+ +A N V +E + S + + + + D++ Sbjct: 6 NRIKELRTQKKLTQQGLADIINSSRGTVAKYEGDERNPSYAMLSLIADALDTTVDYL 62 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 22/62 (35%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 R+K +R K ++Q ++ T++ YE P I +D Sbjct: 1 MSITANRIKELRTQKKLTQQGLADIINSSRGTVAKYEGDERNPSYAMLSLIADALDTTVD 60 Query: 171 WI 172 ++ Sbjct: 61 YL 62 >gi|313625116|gb|EFR94976.1| transcriptional regulator [Listeria innocua FSL J1-023] Length = 71 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 30/70 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V +++ +R+ Q E+A+ ++ E G + S+ +L + + ++ + I Sbjct: 2 KVSNKVRQLREERAIGQNELALALEVSRQTIHAIEKGKYNPSLELSLKMARYFHLTIEEI 61 Query: 91 YDGEVIDRRY 100 + E + Sbjct: 62 FQLEEDEDED 71 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 33/70 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +++ +R+++ + Q E L + T+ E+G+ P ++ + K+ + ++ Sbjct: 1 MKVSNKVRQLREERAIGQNELALALEVSRQTIHAIEKGKYNPSLELSLKMARYFHLTIEE 60 Query: 172 IYFGDEVIVP 181 I+ +E Sbjct: 61 IFQLEEDEDE 70 >gi|313899139|ref|ZP_07832664.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956079|gb|EFR37722.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R A + TQ+++A + +N E G + SI + + + + ++ E Sbjct: 6 KLKAARAAMDLTQEQLAEKVSVTRQTINAIEKGDYNPSINLCITICRVLGKTLNDLFWEE 65 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK+ R ++Q + + + + T++ E+G P I I +V K L+ Sbjct: 1 MAKNLKLKAARAAMDLTQEQLAEKVSVTRQTINAIEKGDYNPSINLCITICRVLGKTLND 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 LFWEE 65 >gi|313677734|ref|YP_004055730.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944432|gb|ADR23622.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 494 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +++ +R + +++ S +N E G I L E+SFD + Sbjct: 12 FGLKVRQLRLEKGLSFAQLSKQTGLSASYLNEIEKGKKYPKIEKINKLSETLEVSFDDLV 71 Query: 92 DGEVIDR 98 ++ + Sbjct: 72 SLQLSKK 78 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R +KG+S + K G+ S L+ E+G+ P+I+ K+ + + D + Sbjct: 16 VRQLRLEKGLSFAQLSKQTGLSASYLNEIEKGKKYPKIEKINKLSETLEVSFDDLV 71 >gi|304393079|ref|ZP_07375008.1| transcriptional regulator [Ahrensia sp. R2A130] gi|303294844|gb|EFL89215.1| transcriptional regulator [Ahrensia sp. R2A130] Length = 150 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 41/141 (29%), Gaps = 22/141 (15%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ R +Q+++ + +E G + + ++ + + Sbjct: 14 VGSRVRLRRTMQGMSQEKLGDALGITFQQIQKYEKGTNRIGASRMQQISSALDVPVAFFF 73 Query: 92 DGEVIDRR------YEDVTNKKRLDPYAIGARLKSIRKDKGMS-----------QIEFGK 134 + D +E +D + ++ R ++ Sbjct: 74 EDAPADVINNATGMHETSATTYVVDFLSSPEGIQLNRAFVRITSPAIRRRVIEMVRTLAD 133 Query: 135 LLGMPNSTLSNYEQGRTIPEI 155 +G+P E P I Sbjct: 134 EVGVPEG-----ENTDGQPPI 149 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 4/96 (4%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + +D + +R++ R +GMSQ + G LG+ + YE+G ++I Sbjct: 3 EKKTPNPIDIHVG-SRVRLRRTMQGMSQEKLGDALGITFQQIQKYEKGTNRIGASRMQQI 61 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSK 197 + + + E I A G + + Sbjct: 62 SSALDVPVAFFF---EDAPADVINNATGMHETSATT 94 >gi|292491245|ref|YP_003526684.1| hypothetical protein Nhal_1128 [Nitrosococcus halophilus Nc4] gi|291579840|gb|ADE14297.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 128 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 IK R TQ ++A A +S + + E G +++ + + D + D Sbjct: 65 IKVWRTYRGLTQHDLAEQAGLSQSYLAMMEKGEREGTVKALKRIAKALNVDIDDLVDMHD 124 Query: 96 IDR 98 + Sbjct: 125 EEP 127 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 31/83 (37%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + E V +K R +G++Q + + G+ S L+ E+G Sbjct: 38 LERAIAAPDDEGVPQDIVERLLEGENPIKVWRTYRGLTQHDLAEQAGLSQSYLAMMEKGE 97 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 +K ++I + +D + Sbjct: 98 REGTVKALKRIAKALNVDIDDLV 120 >gi|254494052|ref|ZP_05107223.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|226513092|gb|EEH62437.1| transcriptional regulator [Neisseria gonorrhoeae 1291] Length = 243 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 4/87 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K+ RK N +Q+ +A A +S + E+G L ++S W+ G Sbjct: 13 DRLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNK-KATNIAKLAKILDVSAFWLETG 71 Query: 94 EVIDRRY---EDVTNKKRLDPYAIGAR 117 E + D + Sbjct: 72 EGSRNTPVLINPDLPHEVKDIHRPMMW 98 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K D RLK RK+K +SQ KL + ST++ E GR + K+ ++ Sbjct: 3 YKEFDMSEFKDRLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNK-KATNIAKLAKIL 61 Query: 166 KKHLDWIYFGD 176 W+ G+ Sbjct: 62 DVSAFWLETGE 72 >gi|226309623|ref|YP_002769517.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226092571|dbj|BAH41013.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 132 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 VG RIK +R+ +Q ++A + ++ E+G + + +E+S D++ Sbjct: 18 VGQRIKWLREQKQWSQLQLAEKLGIHNTVLSRIESGEKKGVDAHLISKVADLFEVSTDFL 77 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEI 155 + ++ +G R+K +R+ K SQ++ + LG+ N+ LS E G + Sbjct: 1 MLEWNCQNDRGGFTMSIVGQRIKWLREQKQWSQLQLAEKLGIHNTVLSRIESGEKKGVDA 60 Query: 156 KPARKIKQVTKKHLDWIYFGDEV 178 K+ + + D+++ E Sbjct: 61 HLISKVADLFEVSTDFLHGRTEE 83 >gi|210610650|ref|ZP_03288550.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787] gi|210152372|gb|EEA83378.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787] Length = 124 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++ D+G R++ +R N TQ++ A + E G S++ +++ + I Sbjct: 20 FYVDMGKRLRIVRIKANYTQEQFAEILGMSTAYYGKIERGEHGLSLKKLVHVYEKLNIDI 79 Query: 88 DWIYDGEVIDRRYED 102 +++ G D Sbjct: 80 NYLLTGAKSSSFTVD 94 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RL+ +R +Q +F ++LGM + E+G +K + + ++ Sbjct: 21 YVDMGKRLRIVRIKANYTQEQFAEILGMSTAYYGKIERGEHGLSLKKLVHVYEKLNIDIN 80 Query: 171 WIYFG 175 ++ G Sbjct: 81 YLLTG 85 >gi|241554132|ref|YP_002979345.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863438|gb|ACS61100.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 283 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 27/57 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 ++G +++ R K+Q ++++ + ++ E+G + L+L + ++ Sbjct: 14 ELGIQLRAWRDTRGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLADALDVPL 70 Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +L++ R +G SQ++ G+ +S E GR+ P + L Sbjct: 18 QLRAWRDTRGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLADALDVPL 70 >gi|153941266|ref|YP_001389907.1| hypothetical protein CLI_0622 [Clostridium botulinum F str. Langeland] gi|226947795|ref|YP_002802886.1| hypothetical protein CLM_0645 [Clostridium botulinum A2 str. Kyoto] gi|152937162|gb|ABS42660.1| conserved domain protein [Clostridium botulinum F str. Langeland] gi|226843583|gb|ACO86249.1| conserved domain protein [Clostridium botulinum A2 str. Kyoto] gi|295317990|gb|ADF98367.1| conserved domain protein [Clostridium botulinum F str. 230613] Length = 67 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K R+ M QI+ + +G+ T+ + E GR P +K A I +V ++ ++ + Sbjct: 7 NIKEYREKTNMKQIDLAEKIGVRRETIVHLENGRYNPSLKMAMDIAKVFNATVEELFKFE 66 Query: 177 E 177 + Sbjct: 67 D 67 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 IK+ R+ N Q ++A + ENG + S++ A+ + + + + ++ E Sbjct: 7 NIKEYREKTNMKQIDLAEKIGVRRETIVHLENGRYNPSLKMAMDIAKVFNATVEELFKFE 66 Query: 95 V 95 Sbjct: 67 D 67 >gi|153939757|ref|YP_001389775.1| TPR repeat-containing DNA binding protein [Clostridium botulinum F str. Langeland] gi|170755693|ref|YP_001780059.1| TPR repeat-containing DNA binding protein [Clostridium botulinum B1 str. Okra] gi|152935653|gb|ABS41151.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum F str. Langeland] gi|169120905|gb|ACA44741.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum B1 str. Okra] gi|295317864|gb|ADF98241.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum F str. 230613] Length = 434 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A G ++L E+G + S+ YL S ++ Sbjct: 6 LGEKIKRRRKELNMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEDT 69 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFG-KLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 ++ ++G ++K RK+ M+ + + +S E G++ P + + + Sbjct: 1 MEILSLGEKIKRRRKELNMTLKDLAGDR--ITPGQISLVESGKSNPSMDLLEYLAETLNT 58 Query: 168 HLDWIYFGDEVIVPKSIK 185 +++ ++ K K Sbjct: 59 SIEYFMESEDTQAEKICK 76 >gi|317401219|gb|EFV81863.1| hypothetical protein HMPREF0005_01158 [Achromobacter xylosoxidans C54] Length = 186 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 1/102 (0%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60 + + P L ++ Y + + K R+K R TQK +A A +SA Sbjct: 10 LHVLPLRTYHLSNIYIYQSAYSASFNRRVKTFSDRLKHARLLRGHTQKALARMARLSQSA 69 Query: 61 VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYED 102 + +E+G+ S R L ++ +W+ G+ + Sbjct: 70 IGSYESGLRH-SSRSLRKLAQVLKVELEWLETGKGPMELPME 110 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 RLK R +G +Q ++ + S + +YE G + RK+ QV K L+W+ Sbjct: 41 FSDRLKHARLLRGHTQKALARMARLSQSAIGSYESGLRH-SSRSLRKLAQVLKVELEWLE 99 Query: 174 FGDEVIV 180 G + Sbjct: 100 TGKGPME 106 >gi|312890498|ref|ZP_07750034.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296956|gb|EFQ74089.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 66 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+ R K ++Q E L+G+ T++ E + +P A KI +V K ++ I+ Sbjct: 1 MKNSLRIERAIKNITQAELADLIGVSRQTINTIESNKYVPSTVLALKIARVFGKPVEDIF 60 Query: 174 FGDEV 178 ++ Sbjct: 61 ILEDT 65 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 ++ R N TQ E+A +N E+ S AL + + + I+ E Sbjct: 5 LRIERAIKNITQAELADLIGVSRQTINTIESNKYVPSTVLALKIARVFGKPVEDIFILED 64 Query: 96 ID 97 D Sbjct: 65 TD 66 >gi|309797052|ref|ZP_07691451.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] gi|308119335|gb|EFO56597.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] Length = 251 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R A TQK + ++A+ E G + + + + + N + +W+ Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTK-IVEIANALGVRAEWLS 85 Query: 92 DG 93 G Sbjct: 86 SG 87 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R +G++Q G L+G+ + + E G+ K I +W+ G Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVE-IANALGVRAEWLSSG 87 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + +++ + S K Sbjct: 88 VGNMSDSTVQPIQSTVSHSK 107 >gi|291537211|emb|CBL10323.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 122 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 31/88 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R ++R + ++A G +S + ++NG + + S D++ G Sbjct: 3 ERYCELRDSLGYRDSDVAKGTGITKSTFSDWKNGRSIPKDEKLKKIALFLDTSVDYLRYG 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + Y + K L+ + Sbjct: 63 DQAPQYYLNDETAKMAQEIFDNKELRML 90 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +R G + K G+ ST S+++ GR+IP+ + +KI +D++ +GD+ Sbjct: 7 ELRDSLGYRDSDVAKGTGITKSTFSDWKNGRSIPKDEKLKKIALFLDTSVDYLRYGDQ 64 >gi|228915036|ref|ZP_04078637.1| hypothetical protein bthur0012_22610 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844620|gb|EEM89670.1| hypothetical protein bthur0012_22610 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 185 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVILRNDTQVL 85 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLI 67 >gi|228964769|ref|ZP_04125876.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228795019|gb|EEM42518.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 167 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ ++A +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGAKIKTLRKEKKLTQTDLAGSV-LTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVID 97 + + ++ Sbjct: 63 EEDNVE 68 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K++RK+K ++Q + + + S LS E G+ P +K + I + ++ Sbjct: 6 AKIKTLRKEKKLTQTDLAGSV-LTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D V + I+ K K +K D+ Sbjct: 65 DNVEIVALIQ--KMEPLIKANKCDE 87 >gi|225017731|ref|ZP_03706923.1| hypothetical protein CLOSTMETH_01660 [Clostridium methylpentosum DSM 5476] gi|224949524|gb|EEG30733.1| hypothetical protein CLOSTMETH_01660 [Clostridium methylpentosum DSM 5476] Length = 70 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +K++R + Q E+A A+ ++L E G S SI AL L E+ Sbjct: 5 NHLKELRARHGLNQSELADRADVSRQTISLIERGNYSPSITLALTLARILEV 56 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 + LK +R G++Q E + T+S E+G P I A + ++ + + Sbjct: 1 MILKNHLKELRARHGLNQSELADRADVSRQTISLIERGNYSPSITLALTLARILEVRV 58 >gi|210620982|ref|ZP_03292367.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM 13275] gi|210154966|gb|EEA85972.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM 13275] Length = 204 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++G +IK +R T K+M+ N ++ E G+ S + + + E+ Sbjct: 2 NKNIGAKIKRLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLEKIADVLEVDLT 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + ++ + +K + G + Sbjct: 62 YFFMKPKEHKKTVIRSYEKEVFEITDGKYI 91 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K +R K M+ + + + LS E+G T KI V + L + + Sbjct: 7 AKIKRLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLEKIADVLEVDLTYFFMK 66 Query: 176 DEVIVPKSIKRAKGN 190 + I+ + Sbjct: 67 PKEHKKTVIRSYEKE 81 >gi|154503561|ref|ZP_02040621.1| hypothetical protein RUMGNA_01385 [Ruminococcus gnavus ATCC 29149] gi|153795661|gb|EDN78081.1| hypothetical protein RUMGNA_01385 [Ruminococcus gnavus ATCC 29149] Length = 118 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 35/103 (33%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + K +G ++ R+ +Q +A A ++ E + + + + Sbjct: 5 MDTVKKKLGYMVRSERERRGLSQSRLAEQAGVSTRTISDIETCNGNPELATLIPIAQFLN 64 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 IS D E + K L + R ++R +G+ Sbjct: 65 ISIDAAVQDERKEPDTTTYQIMKELQNCSEDERQIALRTLRGL 107 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++S R+ +G+SQ + G+ T+S+ E PE+ I Q +D Sbjct: 15 MVRSERERRGLSQSRLAEQAGVSTRTISDIETCNGNPELATLIPIAQFLNISID 68 >gi|221135351|ref|ZP_03561654.1| XRE family transcriptional regulator [Glaciecola sp. HTCC2999] Length = 88 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R + TQ ++A + + E G S+ A + + + I+ Sbjct: 3 NRLKVLRAERDWTQADLAQRLDVSRQTIVAIEKGKYDPSLTLAFKTARLFGQAIEAIFID 62 Query: 94 EVIDRRYED 102 E Sbjct: 63 ETDVYTTNS 71 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 39/81 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R ++ +Q + + L + T+ E+G+ P + A K ++ + ++ I+ Sbjct: 1 MKNRLKVLRAERDWTQADLAQRLDVSRQTIVAIEKGKYDPSLTLAFKTARLFGQAIEAIF 60 Query: 174 FGDEVIVPKSIKRAKGNQSSK 194 + + + ++ +G K Sbjct: 61 IDETDVYTTNSRQMRGYHPQK 81 >gi|260683110|ref|YP_003214395.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686708|ref|YP_003217841.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209273|emb|CBA62609.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212724|emb|CBE03830.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 196 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 KD+G +IK +R T K+M+ N ++ E G+ S + + + ++ Sbjct: 3 LNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + +R + +K + + Sbjct: 63 TYFFMKPKEHKRAVLRSYEKEVFDVENSTFI 93 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K +R K M+ + + + LS E+G T KI V L + + Sbjct: 9 AKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVELTYFF-- 66 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + PK KRA K+ Sbjct: 67 ---MKPKEHKRAVLRSYEKE 83 >gi|163942236|ref|YP_001647120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013704|ref|ZP_04170833.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] gi|229135335|ref|ZP_04264127.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|163864433|gb|ABY45492.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228648124|gb|EEL04167.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|228747626|gb|EEL97500.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] Length = 190 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|148255835|ref|YP_001240420.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408008|gb|ABQ36514.1| putative transcriptional regulatory protein with HTH domain [Bradyrhizobium sp. BTAi1] Length = 188 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 9/100 (9%), Positives = 34/100 (34%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + I + + RI R++ + ++A + ++ ++ E S + + L Sbjct: 1 MDQLIDDFSTRLARRILLERESRGWSLADLADQSGVSKATISKIERAEVSPTAVILVKLA 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + ++++ + + + + L+ Sbjct: 61 SAFDLTLAGLMLRAEARAERLSRADDRPVWRDPDTGYLRR 100 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 R+ +G S + G+ +T+S E+ P K+ L + E Sbjct: 20 RESRGWSLADLADQSGVSKATISKIERAEVSPTAVILVKLASAFDLTLAGLMLRAEARAE 79 Query: 182 KSIK 185 + + Sbjct: 80 RLSR 83 >gi|257066291|ref|YP_003152547.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798171|gb|ACV28826.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 73 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 R K VG R+K +R + +QKEMA ++++E G S ++ Sbjct: 6 RLKNKKVGNRLKKLRLSRGLSQKEMADILKVTRPLISMYEAGNRMPSPNIMKKYSIIFKK 65 Query: 86 SFDWIYDG 93 S D I+ Sbjct: 66 SVDDIFFR 73 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 RL +G RLK +R +G+SQ E +L + +S YE G +P +K + KK Sbjct: 6 RLKNKKVGNRLKKLRLSRGLSQKEMADILKVTRPLISMYEAGNRMPSPNIMKKYSIIFKK 65 Query: 168 HLDWIYF 174 +D I+F Sbjct: 66 SVDDIFF 72 >gi|254460982|ref|ZP_05074398.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodobacterales bacterium HTCC2083] gi|206677571|gb|EDZ42058.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodobacteraceae bacterium HTCC2083] Length = 205 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G I+++RKA T +++ + + ++ E G S + + +W Sbjct: 11 KRLGAEIREVRKARGLTLNDLSDQLSCSTAYLSRIELGSARISGALLQEIGKALHVDPEW 70 Query: 90 I 90 Sbjct: 71 F 71 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 3/94 (3%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 N +GA ++ +RK +G++ + L + LS E G ++I Sbjct: 1 MTKNDPSSTAKRLGAEIREVRKARGLTLNDLSDQLSCSTAYLSRIELGSARISGALLQEI 60 Query: 162 KQVTKKHLDWIY---FGDEVIVPKSIKRAKGNQS 192 + +W G+ + I RA+ + Sbjct: 61 GKALHVDPEWFAPVQSGEGPLERHHIVRAENRRK 94 >gi|169334290|ref|ZP_02861483.1| hypothetical protein ANASTE_00688 [Anaerofustis stercorihominis DSM 17244] gi|169259007|gb|EDS72973.1| hypothetical protein ANASTE_00688 [Anaerofustis stercorihominis DSM 17244] Length = 123 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 7/99 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K RK N QKE+A S + +ENG +I + +S D + Sbjct: 6 DNLKKFRKLKNFKQKEIAEMLEIDTSTYSNYENGKREPNILTIKKIAKILNVSGDDLLGI 65 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + ++ + N++ + + RK Q Sbjct: 66 KSKEKNKHFLNNRE-------MSHISKYRKLNEPRQNRV 97 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 1/95 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 LK RK K Q E ++L + ST SNYE G+ P I +KI ++ D Sbjct: 1 MSIFSDNLKKFRKLKNFKQKEIAEMLEIDTSTYSNYENGKREPNILTIKKIAKILNVSGD 60 Query: 171 WIYFGDEVIVPKS-IKRAKGNQSSKKSKKDKKSSN 204 + K + + + SK K ++ N Sbjct: 61 DLLGIKSKEKNKHFLNNREMSHISKYRKLNEPRQN 95 >gi|188584668|ref|YP_001916213.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349355|gb|ACB83625.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 435 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +IK R + TQ+E+A + S ++ E G+ S R + + + + Sbjct: 7 NIGQKIKRARYEKDMTQEELAGK-DFNRSFLSQIEKGLVKPSDRVLSIIADRLNLPLSYF 65 Query: 91 YDGEVIDRRYEDVTN 105 Y+ E D+ E N Sbjct: 66 YEPEDPDKDDEQAIN 80 Score = 43.0 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 1/85 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K R +K M+Q E S LS E+G P + I L + Y Sbjct: 10 QKIKRARYEKDMTQEELAGK-DFNRSFLSQIEKGLVKPSDRVLSIIADRLNLPLSYFYEP 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 ++ N++ + +K Sbjct: 69 EDPDKDDEQAINALNKARNLIQSNK 93 >gi|148251675|ref|YP_001236260.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146403848|gb|ABQ32354.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 138 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 4/103 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K VG+R++ R +Q+++ + +E G + +I + Sbjct: 11 KHVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQISEVLQIPVSF 70 Query: 90 IYDGEVIDRRYEDV----TNKKRLDPYAIGARLKSIRKDKGMS 128 +++G + + D A L R + Sbjct: 71 LFEGVPSGSTNGEPFDGASPAYVSDFLATSEGLALTRAFTRIH 113 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R++ R GMSQ + G+ LG+ + YE+G ++I +V + + +++ G Sbjct: 15 SRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQISEVLQIPVSFLFEG 74 >gi|77412886|ref|ZP_00789090.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161026|gb|EAO72133.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 117 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 24/62 (38%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 ++ + +RK +QKE+A L ++ EN + + + +S Sbjct: 3 ENFALNLIRLRKQKGLSQKELAKKIGMLPQTISNIENQKGYPTFSNLDKIARYFNVSATE 62 Query: 90 IY 91 ++ Sbjct: 63 LF 64 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 33/81 (40%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L +RK KG+SQ E K +GM T+SN E + P KI + ++ Sbjct: 8 NLIRLRKQKGLSQKELAKKIGMLPQTISNIENQKGYPTFSNLDKIARYFNVSATELFGTP 67 Query: 177 EVIVPKSIKRAKGNQSSKKSK 197 + I + + S K K Sbjct: 68 QQIELERVMFQTDEYSRKAEK 88 >gi|46205131|ref|ZP_00209716.1| COG2932: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 77 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 1/75 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI++ RK Q ++ ++ E G + + + +S DW+ Sbjct: 4 LGDRIRERRKLLGLNQTAFGTLVGLDQNTISDLERGKTLETTK-LHEIAQACGVSADWLI 62 Query: 92 DGEVIDRRYEDVTNK 106 + Sbjct: 63 GRTDDPKGGPPTRAM 77 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ RK G++Q FG L+G+ +T+S+ E+G+T+ K +I Q DW+ Sbjct: 8 IRERRKLLGLNQTAFGTLVGLDQNTISDLERGKTLETTK-LHEIAQACGVSADWLI 62 >gi|327393407|dbj|BAK10829.1| putative transcriptional regulator from phage origin [Pantoea ananatis AJ13355] Length = 230 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISFDW 89 ++G +I+ +RKA +E+A + ++ E G S + + + ++ Sbjct: 2 NIGNKIRSLRKARGMKIEELAEAVGVDGANISRLETGKQKSFTEQSINKIAKALKVDVSE 61 Query: 90 IY-DGEVIDRRYEDVTNKKRLDPYAIGA 116 ++ G Y D N + +P A+ Sbjct: 62 LFATGTAEPTVYNDSRNVQEQEPNAMYR 89 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLD 170 IG +++S+RK +GM E + +G+ + +S E G+ + KI + K + Sbjct: 1 MNIGNKIRSLRKARGMKIEELAEAVGVDGANISRLETGKQKSFTEQSINKIAKALKVDVS 60 Query: 171 WIY 173 ++ Sbjct: 61 ELF 63 >gi|324009974|gb|EGB79193.1| helix-turn-helix protein [Escherichia coli MS 57-2] Length = 116 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R A TQK + ++A+ E G + + + + + N + +W+ Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTK-IVEIANALGVRAEWLS 85 Query: 92 DG 93 G Sbjct: 86 SG 87 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R +G++Q G L+G+ + + E G+ K I +W+ G Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVE-IANALGVRAEWLSSG 87 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + +++ + S K Sbjct: 88 VGNMSDSTVQPIQSTVSHSK 107 >gi|323525513|ref|YP_004227666.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323382515|gb|ADX54606.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 84 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + VG ++ +R+ +Q+ +A A + V+L E G S S+R + +++ Sbjct: 2 EPEQAVGEVLRALRRRKGLSQEALAHAAQMERNYVSLIELGRHSPSVRVIWKICAALDVT 61 Query: 87 FDWIY 91 Sbjct: 62 PSAFL 66 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G L+++R+ KG+SQ M + +S E GR P ++ KI Sbjct: 6 AVGEVLRALRRRKGLSQEALAHAAQMERNYVSLIELGRHSPSVRVIWKICAALDVTPSAF 65 Query: 173 YFGDEVIVPKSIKRAKGNQ 191 E + + KR + Sbjct: 66 LAAAEARLGEHSKRTSASD 84 >gi|260574596|ref|ZP_05842599.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259023013|gb|EEW26306.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 120 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 3/100 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R TQ+++A + +E GM S + ++ + + Sbjct: 9 VGKRIRHRRWMVGMTQQQLADRVGIKFQQIQKYETGMNRVSASRLWDIAETLGVAISFFF 68 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 +G + + D A L+ +R + + + Sbjct: 69 EG---IDESREASKTMDGDFLADKEALELVRSYYSIPEAQ 105 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 27/78 (34%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G R++ R GM+Q + +G+ + YE G I + Sbjct: 1 MKHPVDAHVGKRIRHRRWMVGMTQQQLADRVGIKFQQIQKYETGMNRVSASRLWDIAETL 60 Query: 166 KKHLDWIYFGDEVIVPKS 183 + + + G + S Sbjct: 61 GVAISFFFEGIDESREAS 78 >gi|229825610|ref|ZP_04451679.1| hypothetical protein GCWU000182_00972 [Abiotrophia defectiva ATCC 49176] gi|229790173|gb|EEP26287.1| hypothetical protein GCWU000182_00972 [Abiotrophia defectiva ATCC 49176] Length = 79 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQ-LESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +I+ +RKA T E+ ++ ++ G +I + + L + + ++ D I Sbjct: 13 GEKIEYLRKARGFTVSELQDCLGFNTPQSIYKWQKGKVVPTIDHLVALSSLFGVTIDEII 72 Query: 92 DGEVI 96 E Sbjct: 73 IIESN 77 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM-PNSTLSNYEQGRTIPEIKPARKI 161 + +D G +++ +RK +G + E LG ++ +++G+ +P I + Sbjct: 1 MKKLPTIDMVKTGEKIEYLRKARGFTVSELQDCLGFNTPQSIYKWQKGKVVPTIDHLVAL 60 Query: 162 KQVTKKHLDWIYFGD 176 + +D I + Sbjct: 61 SSLFGVTIDEIIIIE 75 >gi|167856042|ref|ZP_02478786.1| helix-turn-helix domain protein [Haemophilus parasuis 29755] gi|219870567|ref|YP_002474942.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] gi|167852837|gb|EDS24107.1| helix-turn-helix domain protein [Haemophilus parasuis 29755] gi|219690771|gb|ACL31994.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] Length = 114 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 31/96 (32%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 + + Q + +G I R+A+ TQ ++A AV+ E G ++ L L Sbjct: 1 MLDKSEQLIQTIGQAIAKYRQASGLTQAQLAEILGISNDAVSRMERGKTIPTVLRLLELS 60 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + +K L Sbjct: 61 EIFHCEVADLVTESSNRSTDQAKVIEKLLQQLDSQQ 96 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + R+ G++Q + ++LG+ N +S E+G+TIP + ++ ++ + + Sbjct: 16 IAKYRQASGLTQAQLAEILGISNDAVSRMERGKTIPTVLRLLELSEIFHCEVADLVTE 73 >gi|52143041|ref|YP_083788.1| transcriptional regulator [Bacillus cereus E33L] gi|51976510|gb|AAU18060.1| transcriptional regulator [Bacillus cereus E33L] Length = 185 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDIQVL 85 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|15923339|ref|NP_370873.1| transcription regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15926050|ref|NP_373583.1| hypothetical protein SA0337 [Staphylococcus aureus subsp. aureus N315] gi|148266836|ref|YP_001245779.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392881|ref|YP_001315556.1| hypothetical protein SaurJH1_0407 [Staphylococcus aureus subsp. aureus JH1] gi|156978677|ref|YP_001440936.1| hypothetical protein SAHV_0346 [Staphylococcus aureus subsp. aureus Mu3] gi|253316550|ref|ZP_04839763.1| hypothetical protein SauraC_10475 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005144|ref|ZP_05143745.2| hypothetical protein SauraM_01715 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795026|ref|ZP_05644005.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258413531|ref|ZP_05681806.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421345|ref|ZP_05684272.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258436954|ref|ZP_05689294.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258444329|ref|ZP_05692663.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258444866|ref|ZP_05693187.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A6300] gi|258448071|ref|ZP_05696200.1| transcription regulator [Staphylococcus aureus A6224] gi|258455904|ref|ZP_05703859.1| transcriptional regulator [Staphylococcus aureus A5937] gi|269201997|ref|YP_003281266.1| putative transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED98] gi|282893508|ref|ZP_06301741.1| transcriptional regulator [Staphylococcus aureus A8117] gi|282927402|ref|ZP_06335020.1| transcriptional regulator [Staphylococcus aureus A10102] gi|295405621|ref|ZP_06815431.1| hypothetical protein SMAG_00775 [Staphylococcus aureus A8819] gi|296275176|ref|ZP_06857683.1| putative transcriptional regulator, Cro/CI family protein [Staphylococcus aureus subsp. aureus MR1] gi|297245528|ref|ZP_06929396.1| transcriptional regulator [Staphylococcus aureus A8796] gi|13700263|dbj|BAB41561.1| SA0337 [Staphylococcus aureus subsp. aureus N315] gi|14246117|dbj|BAB56511.1| probable transcription regulator [Staphylococcus aureus subsp. aureus Mu50] gi|147739905|gb|ABQ48203.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149945333|gb|ABR51269.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|156720812|dbj|BAF77229.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788998|gb|EEV27338.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257839778|gb|EEV64247.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842769|gb|EEV67191.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257848745|gb|EEV72732.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257850588|gb|EEV74536.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257856184|gb|EEV79098.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A6300] gi|257858586|gb|EEV81460.1| transcription regulator [Staphylococcus aureus A6224] gi|257862116|gb|EEV84889.1| transcriptional regulator [Staphylococcus aureus A5937] gi|262074287|gb|ACY10260.1| putative transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED98] gi|282590726|gb|EFB95802.1| transcriptional regulator [Staphylococcus aureus A10102] gi|282764194|gb|EFC04321.1| transcriptional regulator [Staphylococcus aureus A8117] gi|285816071|gb|ADC36558.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus 04-02981] gi|294969696|gb|EFG45715.1| hypothetical protein SMAG_00775 [Staphylococcus aureus A8819] gi|297177514|gb|EFH36765.1| transcriptional regulator [Staphylococcus aureus A8796] gi|312828871|emb|CBX33713.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129994|gb|EFT85983.1| hypothetical protein CGSSa03_03972 [Staphylococcus aureus subsp. aureus CGS03] gi|329725743|gb|EGG62222.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 67 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G++Q + KL G+ T+S E+ +P + A KI ++ + ++ ++ Sbjct: 1 MRNRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNFMPSVLTAIKIARIFNETVETVF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IIEED 65 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q ++A A ++L E S+ A+ + + + + ++ Sbjct: 3 NRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNFMPSVLTAIKIARIFNETVETVFII 62 Query: 94 EVID 97 E + Sbjct: 63 EEDE 66 >gi|331090228|ref|ZP_08339116.1| hypothetical protein HMPREF1025_02699 [Lachnospiraceae bacterium 3_1_46FAA] gi|330402174|gb|EGG81746.1| hypothetical protein HMPREF1025_02699 [Lachnospiraceae bacterium 3_1_46FAA] Length = 346 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + I++ RK + TQ+++A AVN +E G I L +I + + Sbjct: 2 KINQIIREKRKELSLTQEQIAELLGVSTPAVNKWEKGSTYPDITLLPALARLLKIDLNTL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYA 113 E LD Sbjct: 62 LSFNEDLTDIEIENFVNELDEIV 84 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 37/75 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I ++ RK+ ++Q + +LLG+ ++ +E+G T P+I + ++ K L+ Sbjct: 1 MKINQIIREKRKELSLTQEQIAELLGVSTPAVNKWEKGSTYPDITLLPALARLLKIDLNT 60 Query: 172 IYFGDEVIVPKSIKR 186 + +E + I+ Sbjct: 61 LLSFNEDLTDIEIEN 75 >gi|310828721|ref|YP_003961078.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308740455|gb|ADO38115.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 124 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +RKA Q + A + + ++ ENG S R + E+ ++ +W+ G Sbjct: 5 ERLKALRKALCMKQGDFAKRISTTQGHISDIENGRKLLSERTIKLICLEFNVNEEWLRTG 64 Query: 94 EVIDRRYEDVTNK 106 + ++ Sbjct: 65 KGEMFVNVLPEDE 77 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK++RK M Q +F K + +S+ E GR + + + I + +W Sbjct: 1 MNDYERLKALRKALCMKQGDFAKRISTTQGHISDIENGRKLLSERTIKLICLEFNVNEEW 60 Query: 172 IYFGDEVI 179 + G + Sbjct: 61 LRTGKGEM 68 >gi|257440167|ref|ZP_05615922.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197519|gb|EEU95803.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 266 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++A + +SA+ +E S + L YE++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDKFKDISHYALIELAKFYEVTVDYL 64 Query: 91 YDGEVIDRRYEDV 103 Sbjct: 65 LGRSQTKNHPNAD 77 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + S L +YE + ++ + + +D Sbjct: 3 LSIQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDKFKDISHYALIELAKFYEVTVD 62 Query: 171 WIY 173 ++ Sbjct: 63 YLL 65 >gi|225863781|ref|YP_002749159.1| transcriptional regulator [Bacillus cereus 03BB102] gi|225789739|gb|ACO29956.1| transcriptional regulator [Bacillus cereus 03BB102] Length = 116 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 2/86 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ RIK IR N Q++ + + V+ FENG + + + +++ Sbjct: 2 EMKDRIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPGRETIEKIAKRFNVPVNYL 61 Query: 91 Y--DGEVIDRRYEDVTNKKRLDPYAI 114 Y + + + K+ +D Sbjct: 62 YGENKDDNSIDDKYKKFKEIMDWLEP 87 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 37/77 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K IR D M+Q +FGK + + T+S +E G+ P + KI + +++ Sbjct: 1 MEMKDRIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPGRETIEKIAKRFNVPVNY 60 Query: 172 IYFGDEVIVPKSIKRAK 188 +Y ++ K K Sbjct: 61 LYGENKDDNSIDDKYKK 77 >gi|254462264|ref|ZP_05075680.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678853|gb|EDZ43340.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 133 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 29/91 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK R A +Q ++A V +E+G S L + + + + Sbjct: 8 IGARIKGRRIALKISQTKLAEAVGVRFQQVQKYESGANRVSASRLLMVAETLGVPISYFF 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 G + + A L R Sbjct: 68 QGLDNAGSADSTDVQPSARATAPMNALSDAR 98 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 AR+K R +SQ + + +G+ + YE G + + + + + G Sbjct: 10 ARIKGRRIALKISQTKLAEAVGVRFQQVQKYESGANRVSASRLLMVAETLGVPISYFFQG 69 >gi|126727971|ref|ZP_01743794.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126702744|gb|EBA01854.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 122 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 1/98 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ R TQ+++A + +E GM S + ++ + + Sbjct: 9 VGKRVRHRRWMVGMTQQQLAEKVGIKFQQIQKYETGMNRISASRLWAIAENLDVQISFFF 68 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +G E ++ + + ++ L+ +R + Sbjct: 69 EGLEGNEKASDQKFEGMPENVFSDKEALELVRCYYAIP 106 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 36/94 (38%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K +G R++ R GM+Q + + +G+ + YE G I + Sbjct: 1 MKHPVDVHVGKRVRHRRWMVGMTQQQLAEKVGIKFQQIQKYETGMNRISASRLWAIAENL 60 Query: 166 KKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + + + G E S ++ +G + S K+ Sbjct: 61 DVQISFFFEGLEGNEKASDQKFEGMPENVFSDKE 94 >gi|126699098|ref|YP_001087995.1| putative transcriptional regulator [Clostridium difficile 630] Length = 197 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 KD+G +IK +R T K+M+ N ++ E G+ S + + + ++ Sbjct: 4 LNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 63 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + +R + +K + + Sbjct: 64 TYFFMKPKEHKRAVLRSYEKEVFDVENSTFI 94 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K +R K M+ + + + LS E+G T KI V L + + Sbjct: 10 AKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVELTYFF-- 67 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + PK KRA K+ Sbjct: 68 ---MKPKEHKRAVLRSYEKE 84 >gi|77408011|ref|ZP_00784760.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77412927|ref|ZP_00789131.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161067|gb|EAO72174.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173373|gb|EAO76493.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 143 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 15/139 (10%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++ R+K +R + ++ + +E+G I + + + Y S D + Sbjct: 3 ELSKRLKQLRIDRGIDKSQLITYLAITSRTYDRYEDGSRKPDIETLVKIADYYCCSLDVL 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + D LK + + + G+ Y Sbjct: 63 VSRNYTEDFVDRSLVVSYRD-------LKELGLNDKI-------AHGLIKQVYDGY-SAE 107 Query: 151 TIPEIKPARKIKQVTKKHL 169 IP + +K+K + KK L Sbjct: 108 KIPLVDSIKKLKFIYKKDL 126 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + RLK +R D+G+ + + L + + T YE G P+I+ KI LD Sbjct: 1 MIELSKRLKQLRIDRGIDKSQLITYLAITSRTYDRYEDGSRKPDIETLVKIADYYCCSLD 60 Query: 171 WIYFGD 176 + + Sbjct: 61 VLVSRN 66 >gi|119773818|ref|YP_926558.1| XRE family transcriptional regulator [Shewanella amazonensis SB2B] gi|119766318|gb|ABL98888.1| transcriptional regulator, XRE family [Shewanella amazonensis SB2B] Length = 504 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK N+ T ++++ S +++ E G S + +E Sbjct: 14 LGTKIRNLRKRNHLTMEDLSSRCVRVDPGSAPSVSYLSMIERGKRVPSAAMLEVIAKVFE 73 Query: 85 ISFDWIYDGEVIDRRYEDVTNKK 107 S DW D + ++ Sbjct: 74 KSPDWFLDDAPEEDAITPDKGRR 96 >gi|103485648|ref|YP_615209.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98975725|gb|ABF51876.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 93 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 +ET + L + T + V R+++ R+A +Q E+A +N E Sbjct: 1 METCKECLTDETANCKELLTGTGAAVENRVREYREAAGWSQGELARRLGVSRQTINAVET 60 Query: 67 GMCSTSIRYALYLRNEYEISFDWIY 91 S+ AL + + + ++ Sbjct: 61 DKYDPSLPLALRMARLFALEVCELF 85 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ R++ R+ G SQ E + LG+ T++ E + P + A ++ ++ + + Sbjct: 25 AVENRVREYREAAGWSQGELARRLGVSRQTINAVETDKYDPSLPLALRMARLFALEVCEL 84 Query: 173 Y 173 + Sbjct: 85 F 85 >gi|295099191|emb|CBK88280.1| Predicted transcriptional regulator with C-terminal CBS domains [Eubacterium cylindroides T2-87] Length = 464 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E+R+ K + +++ + R +Q E+A S +N E+G + ++ L + + Sbjct: 3 ELRKRQKII-SQLVEARLEQGISQAELARRLGIQRSGINRLESGTQNPTLDMILKIASAL 61 Query: 84 --EISFD 88 ++S + Sbjct: 62 GKDVSLE 68 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++L R ++G+SQ E + LG+ S ++ E G P + KI K + Sbjct: 12 SQLVEARLEQGISQAELARRLGIQRSGINRLESGTQNPTLDMILKIASALGKDV 65 >gi|291540444|emb|CBL13555.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 122 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 31/88 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R ++R + ++A G +S + ++NG + + S D++ G Sbjct: 3 ERYCELRDSLGYRDSDVAKGTGITKSTFSDWKNGRSIPKDEKLKKIALFLDTSVDYLRYG 62 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + Y + K L+ + Sbjct: 63 DQAPQYYLNDETAKMAQEIFDNKELRML 90 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +R G + K G+ ST S+++ GR+IP+ + +KI +D++ +GD+ Sbjct: 7 ELRDSLGYRDSDVAKGTGITKSTFSDWKNGRSIPKDEKLKKIALFLDTSVDYLRYGDQ 64 >gi|260556784|ref|ZP_05829002.1| LexA repressor [Acinetobacter baumannii ATCC 19606] gi|260410043|gb|EEX03343.1| LexA repressor [Acinetobacter baumannii ATCC 19606] Length = 224 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++ +G +K IRKA TQKE+A+ + +S ++ E G S L L Sbjct: 1 MDKFMATLGENLKAIRKAKKMTQKELAMKSGVKQSVISDLETGNAK-STGSILELATALG 59 Query: 85 ISFDWIYDG 93 ++ + + G Sbjct: 60 VTAEELKKG 68 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 109 LDPYAIG--ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D + LK+IRK K M+Q E G+ S +S+ E G ++ Sbjct: 1 MDKFMATLGENLKAIRKAKKMTQKELAMKSGVKQSVISDLETGNAK-STGSILELATALG 59 Query: 167 KHLDWIYFG 175 + + G Sbjct: 60 VTAEELKKG 68 >gi|229169877|ref|ZP_04297573.1| hypothetical protein bcere0007_48170 [Bacillus cereus AH621] gi|228613591|gb|EEK70720.1| hypothetical protein bcere0007_48170 [Bacillus cereus AH621] Length = 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++QIE K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQHHITQIEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK ++ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQHHITQIEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEEIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|170761242|ref|YP_001785744.1| TPR repeat-containing DNA binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408231|gb|ACA56642.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 434 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A G ++L E+G + S+ YL S ++ Sbjct: 6 LGEKIKRRRKELNMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEDT 69 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFG-KLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 ++ ++G ++K RK+ M+ + + +S E G++ P + + + Sbjct: 1 MEILSLGEKIKRRRKELNMTLKDLAGDR--ITPGQISLVESGKSNPSMDLLEYLAETLNT 58 Query: 168 HLDWIYFGDEVIVPKSIK 185 +++ ++ K K Sbjct: 59 SIEYFMESEDTQAEKICK 76 >gi|77406696|ref|ZP_00783736.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] gi|77174691|gb|EAO77520.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] Length = 344 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 TQ+ ++ + ++ ++ +EN I Y + + N ++IS D + + + Sbjct: 1 MTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDLVGYQKTLSDDQRNQ 60 Query: 105 NKKRLDPYAI 114 K L A Sbjct: 61 LIKDLKIKAN 70 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 M+Q L + +T+S +E + P+I + + LD + Sbjct: 1 MTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDLV 47 >gi|75758330|ref|ZP_00738454.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228905699|ref|ZP_04069624.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228976517|ref|ZP_04136972.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229148299|ref|ZP_04276584.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|74494192|gb|EAO57284.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228635165|gb|EEK91710.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228783178|gb|EEM31302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228853957|gb|EEM98690.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|326943902|gb|AEA19790.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar chinensis CT-43] Length = 130 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I+ +R ++KE A N S V +ENG I + + +S + Sbjct: 6 FGKNIRKLRAMKGLSRKEFAQAINTPYSTVTSWENGDKVPKIERLPTIAKFFNVSESRLL 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 ++ D + + + DP A++ Sbjct: 66 HHQMSDNEILEKDSSET-DPIERMAQI 91 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D G ++ +R KG+S+ EF + + P ST++++E G +P+I+ I + Sbjct: 1 MDNNIFGKNIRKLRAMKGLSRKEFAQAINTPYSTVTSWENGDKVPKIERLPTIAKFFNVS 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQSSKK 195 + K + ++ Sbjct: 61 ESRLLHHQMSDNEILEKDSSETDPIER 87 >gi|47565459|ref|ZP_00236500.1| transcriptional regulator, XRE family [Bacillus cereus G9241] gi|47557449|gb|EAL15776.1| transcriptional regulator, XRE family [Bacillus cereus G9241] Length = 404 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ +A G+ +S ++ ENG + S++ Y+ + E ++ Sbjct: 4 LGEKIKALRKEKKLTQTALA-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 92 DGEVID 97 + + ++ Sbjct: 63 EEDDVE 68 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++K++RK+K ++Q + S LS E G+ P +K + I + + ++ Sbjct: 6 EKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + I+ K K +K D+ Sbjct: 65 DDVEIVALIQ--KMEPLIKANKCDE 87 >gi|238923205|ref|YP_002936720.1| hypothetical protein EUBREC_0800 [Eubacterium rectale ATCC 33656] gi|238925043|ref|YP_002938559.1| hypothetical protein EUBREC_2695 [Eubacterium rectale ATCC 33656] gi|238874879|gb|ACR74586.1| Hypothetical protein EUBREC_0800 [Eubacterium rectale ATCC 33656] gi|238876718|gb|ACR76425.1| Hypothetical protein EUBREC_2695 [Eubacterium rectale ATCC 33656] Length = 277 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R +E+A +SA+ +E + + L + Y +S D++ Sbjct: 16 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 75 Query: 91 YDGEVIDRRYEDV 103 + Sbjct: 76 FCRTENRAEINTP 88 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWI 172 I RLK +R +KG+ E + G+ S L +YE+ + LD++ Sbjct: 16 IQERLKDLRLNKGLKLEELAEQTGISKSALGSYEKDDYKEINHGNLILLADFYGVSLDYL 75 Query: 173 YFGDEVIVP 181 + E Sbjct: 76 FCRTENRAE 84 >gi|268591987|ref|ZP_06126208.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gi|291312378|gb|EFE52831.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 87 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 25/74 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++ R T + + + ++ +E G + +I N + D+ Sbjct: 13 IGLQVRKRRLQMGWTAHTLGKKSGLSQQQISRYERGTQNFTIHRLCIFANVLQCDLDYFL 72 Query: 92 DGEVIDRRYEDVTN 105 + TN Sbjct: 73 EQNSYKNLSLVNTN 86 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +++ R G + GK G+ +S YE+G I V + LD+ Sbjct: 16 QVRKRRLQMGWTAHTLGKKSGLSQQQISRYERGTQNFTIHRLCIFANVLQCDLDYFL 72 >gi|225376471|ref|ZP_03753692.1| hypothetical protein ROSEINA2194_02113 [Roseburia inulinivorans DSM 16841] gi|257437872|ref|ZP_05613627.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|323142381|ref|ZP_08077212.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|328948765|ref|YP_004366102.1| hypothetical protein Tresu_1922 [Treponema succinifaciens DSM 2489] gi|332652434|ref|ZP_08418179.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] gi|225211643|gb|EEG93997.1| hypothetical protein ROSEINA2194_02113 [Roseburia inulinivorans DSM 16841] gi|257199532|gb|EEU97816.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|295092974|emb|CBK82065.1| Helix-turn-helix. [Coprococcus sp. ART55/1] gi|295108603|emb|CBL22556.1| Helix-turn-helix. [Ruminococcus obeum A2-162] gi|322413144|gb|EFY04032.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|328449089|gb|AEB14805.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] gi|332517580|gb|EGJ47183.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] Length = 266 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 2/103 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R T ++A +SA+ +E S + L Y ++ D++ Sbjct: 5 IQERLKDLRVERGLTLGQLAEQTGLSKSALGSYETEDFKDISHYALIRLAKFYGVTADYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFG 133 + RL + LKS R D + Sbjct: 65 LGLSEMKNHPNADLADLRLSD-EMIDLLKSGRIDNTLLCELAA 106 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + G+ S L +YE ++ + D Sbjct: 3 LSIQERLKDLRVERGLTLGQLAEQTGLSKSALGSYETEDFKDISHYALIRLAKFYGVTAD 62 Query: 171 WIYFGDEV 178 ++ E+ Sbjct: 63 YLLGLSEM 70 >gi|225377318|ref|ZP_03754539.1| hypothetical protein ROSEINA2194_02965 [Roseburia inulinivorans DSM 16841] gi|225210849|gb|EEG93203.1| hypothetical protein ROSEINA2194_02965 [Roseburia inulinivorans DSM 16841] Length = 310 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+ ++RK +E++ +SA+ +E + + L + Y +S D++ Sbjct: 7 IQERLWELRKDKGLNLEELSELTGISKSALGSYEKEDYKEINHGNLITLADFYGVSVDYL 66 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + L+ + A LK R + + Sbjct: 67 LCRTENREQINTPLTELHLND-EMVALLKGGRINNRLLCE 105 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWIYFGDE 177 +RKDKG++ E +L G+ S L +YE+ + +D++ E Sbjct: 13 ELRKDKGLNLEELSELTGISKSALGSYEKEDYKEINHGNLITLADFYGVSVDYLLCRTE 71 >gi|224538182|ref|ZP_03678721.1| hypothetical protein BACCELL_03073 [Bacteroides cellulosilyticus DSM 14838] gi|224520204|gb|EEF89309.1| hypothetical protein BACCELL_03073 [Bacteroides cellulosilyticus DSM 14838] Length = 70 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I RK TQ+++A AN + + ENG + SI + N ++ Sbjct: 10 NIGKIIIQRRKELGITQEDLAYSANVDRTYIGYIENGKQNISISILCKIANVLNLNMKDF 69 Query: 91 Y 91 + Sbjct: 70 F 70 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RK+ G++Q + + + + E G+ I KI V ++ + Sbjct: 13 KIIIQRRKELGITQEDLAYSANVDRTYIGYIENGKQNISISILCKIANVLNLNMKDFF 70 >gi|167757416|ref|ZP_02429543.1| hypothetical protein CLORAM_02966 [Clostridium ramosum DSM 1402] gi|167703591|gb|EDS18170.1| hypothetical protein CLORAM_02966 [Clostridium ramosum DSM 1402] Length = 129 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWI 90 +G RIK++R NN T E+A + +EN + + L + +S +I Sbjct: 3 IGERIKNLRLKNNYTLDEIADKLGTSRQTIFKYENNIVTNIPSDKIEKLALIFNVSPAYI 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGM 127 E + + + + K I K+ + Sbjct: 63 MGWENSQLGDYEENVEYLKNQPELLELYKEILKNDQL 99 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLD 170 IG R+K++R + E LG T+ YE T K+ + Sbjct: 1 MTIGERIKNLRLKNNYTLDEIADKLGTSRQTIFKYENNIVTNIPSDKIEKLALIFNVSPA 60 Query: 171 WIY 173 +I Sbjct: 61 YIM 63 >gi|117619340|ref|YP_857051.1| Cro/CI family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560747|gb|ABK37695.1| transcriptional regulator, Cro/CI family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 200 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 25/77 (32%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V R+K+ R+ + E++ A + + E G + SI L +S I Sbjct: 22 VSRRLKEYRQQGRLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKLAAALGVSVADIV 81 Query: 92 DGEVIDRRYEDVTNKKR 108 D + Sbjct: 82 DVASTPTVHLIEPQAIP 98 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+ RLK R+ +S E + G+ L E+G P I K+ + I Sbjct: 21 AVSRRLKEYRQQGRLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKLAAALGVSVADI 80 Query: 173 Y 173 Sbjct: 81 V 81 >gi|83310829|ref|YP_421093.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945670|dbj|BAE50534.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 164 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 29/67 (43%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + +G +++ R + TQ+++A ++ +++ E G + + + E + Sbjct: 47 NLKQQIGLKVRAARLKRSLTQEQLAERVDKTAESISNIERGHVTPPLDTLARIAQELDTP 106 Query: 87 FDWIYDG 93 + ++ Sbjct: 107 MTFFFED 113 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +++ R + ++Q + + + ++SN E+G P + +I Q + + + ++ Sbjct: 56 VRAARLKRSLTQEQLAERVDKTAESISNIERGHVTPPLDTLARIAQELDTPMTFFF--ED 113 Query: 178 VIVPKSIKRAK 188 + P+++ R + Sbjct: 114 IGTPRAVARNR 124 >gi|39935673|ref|NP_947949.1| transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39649526|emb|CAE28048.1| possible transcriptional regulator, XRE family, CUPIN domain [Rhodopseudomonas palustris CGA009] Length = 207 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R +G S K G+ + L E G+++P I K+ + Sbjct: 28 HNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPFARLIAT 87 Query: 176 DEVIVPKSIKRAK 188 + P+ ++R Sbjct: 88 ESPHHPQVLRRTD 100 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 22/65 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG ++ +R + + +A + + + E G +I + + F + Sbjct: 26 VGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPFARLI 85 Query: 92 DGEVI 96 E Sbjct: 86 ATESP 90 >gi|152974571|ref|YP_001374088.1| helix-turn-helix domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023323|gb|ABS21093.1| helix-turn-helix domain protein [Bacillus cytotoxicus NVH 391-98] Length = 69 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + K +G RI+ +RK N +Q+ + +N + + E G + +I + N I+ Sbjct: 2 ELIKKLGERIRLLRKEQNLSQERLGELSNIHTNHIGAIERGEKNVTIESLAKITNGLGIT 61 Query: 87 FDWIYDG 93 + ++ Sbjct: 62 LEELFRD 68 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK++ +SQ G+L + + + E+G I+ KI L+ ++ Sbjct: 9 ERIRLLRKEQNLSQERLGELSNIHTNHIGAIERGEKNVTIESLAKITNGLGITLEELFRD 68 >gi|146276465|ref|YP_001166624.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554706|gb|ABP69319.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17025] Length = 132 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+ R+A TQ+EMA + +E+ + + +S W+ Sbjct: 16 FGDRLAGAREAAGLTQEEMARRLGVRLKTLQSWEDDLAEPRANRLQMMAGMLNVSLRWLL 75 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR-KDKGMSQIE 131 GE + A L +R + ++Q Sbjct: 76 TGEGDGVEGPSEPVVLPAEGREALAELARMRTQTLALAQEM 116 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L R+ G++Q E + LG+ TL ++E P + + + L W+ G+ Sbjct: 20 LAGAREAAGLTQEEMARRLGVRLKTLQSWEDDLAEPRANRLQMMAGMLNVSLRWLLTGE 78 >gi|309775263|ref|ZP_07670272.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 3_1_53] gi|308916926|gb|EFP62657.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 3_1_53] Length = 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++K R A + TQ+E+A+ + +N E G + SI + + E + + + ++ E Sbjct: 6 KLKAARAAMDLTQEELAVKVHVTRQTINAIEKGDYNPSINLCIAICRELQKTLNDLFWEE 65 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A +LK+ R ++Q E + + T++ E+G P I I + +K L+ Sbjct: 1 MAKNLKLKAARAAMDLTQEELAVKVHVTRQTINAIEKGDYNPSINLCIAICRELQKTLND 60 Query: 172 IYFGD 176 +++ + Sbjct: 61 LFWEE 65 >gi|294629300|ref|ZP_06707860.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] gi|292832633|gb|EFF90982.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] Length = 406 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEI 85 G R++ +R+ TQ ++A + ENG + L + + Sbjct: 5 KFGQRVQILRERRGLTQAQLADFVGISPHTMRKIENGQQKAPGLDMVLRIAEALRV 60 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKK 167 ++ G R++ +R+ +G++Q + +G+ T+ E G+ P + +I + + Sbjct: 1 MNSLKFGQRVQILRERRGLTQAQLADFVGISPHTMRKIENGQQKAPGLDMVLRIAEALRV 60 >gi|289522622|ref|ZP_06439476.1| DNA-binding protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504458|gb|EFD25622.1| DNA-binding protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 100 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE- 82 E + +G ++ RK N Q ++ A+ + ++ ENG+ S+ L L Sbjct: 2 EFEILSEVIGDLVRRRRKELNLAQADVCRYAHISQGQLSRIENGLRIPSLALMLRLCRVL 61 Query: 83 -YEISFDWIYD 92 Y+IS I+D Sbjct: 62 KYDISISDIFD 72 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT--KKHLDWIY 173 ++ RK+ ++Q + + + LS E G IP + ++ +V + I+ Sbjct: 14 VRRRRKELNLAQADVCRYAHISQGQLSRIENGLRIPSLALMLRLCRVLKYDISISDIF 71 >gi|284007818|emb|CBA73695.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 137 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 30/90 (33%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K +G RIK R+ +Q+ +A +++ +E + + L Sbjct: 3 MKTLGERIKARRQELKLSQRALASILGIAHVSISQWERNESTPKGENLMALAKTLHCEPS 62 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 W+++ + + + + L Sbjct: 63 WLFEEQGNLPISASELPEAPIKLSDLQKTL 92 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 34/65 (52%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ +G R+K+ R++ +SQ +LG+ + ++S +E+ + P+ + + + Sbjct: 1 MNMKTLGERIKARRQELKLSQRALASILGIAHVSISQWERNESTPKGENLMALAKTLHCE 60 Query: 169 LDWIY 173 W++ Sbjct: 61 PSWLF 65 >gi|258653034|ref|YP_003202190.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556259|gb|ACV79201.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 215 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +++ R+A T +MA ++ ++ EN S S+ L +I Sbjct: 29 DLERAIAAQVRSYRQAAGVTLADMAERVGISKAMLSKIENAQTSCSLTTLARLAAGLDIP 88 Query: 87 FDWIYDGEVIDRR 99 ++ G ++R Sbjct: 89 VTALFRGVDVERE 101 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 32/69 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 AI A+++S R+ G++ + + +G+ + LS E +T + ++ + + Sbjct: 33 AIAAQVRSYRQAAGVTLADMAERVGISKAMLSKIENAQTSCSLTTLARLAAGLDIPVTAL 92 Query: 173 YFGDEVIVP 181 + G +V Sbjct: 93 FRGVDVERE 101 >gi|171779398|ref|ZP_02920362.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282015|gb|EDT47446.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 228 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 32/97 (32%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K+ R Q E+A + + +E G + L ++S + + Sbjct: 5 EKLKNRRLELGLKQTELAKELGISKQSYFAWEKGTAKPTKANLAKLEELLQVSHGYFSEL 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 E+ + + + L+ RK M Q Sbjct: 65 EIATLYKQLTDQNQEKALTYVQDLLEQQRKVVTMVQE 101 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ R + G+ Q E K LG+ + +E+G P K++++ + + Sbjct: 1 MYFPEKLKNRRLELGLKQTELAKELGISKQSYFAWEKGTAKPTKANLAKLEELLQVSHGY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|154496042|ref|ZP_02034738.1| hypothetical protein BACCAP_00326 [Bacteroides capillosus ATCC 29799] gi|150274597|gb|EDN01661.1| hypothetical protein BACCAP_00326 [Bacteroides capillosus ATCC 29799] Length = 114 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E ++ ++ G R + R +++A A ++ E G + L Sbjct: 4 EKERFNQEFGRRCRLARGNRRM--EDVAEQAGITPQFLSSVERGKKGMTGMNIANLARAL 61 Query: 84 EISFDWIYDGEVI 96 ++ D++ G Sbjct: 62 NVTADYLLYGRTD 74 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 119 KSIRKDKGMS-QIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + R +G + + G+ LS+ E+G+ + + D++ +G Sbjct: 14 RRCRLARGNRRMEDVAEQAGITPQFLSSVERGKKGMTGMNIANLARALNVTADYLLYG 71 >gi|150020470|ref|YP_001305824.1| cupin 2 domain-containing protein [Thermosipho melanesiensis BI429] gi|149792991|gb|ABR30439.1| Cupin 2, conserved barrel domain protein [Thermosipho melanesiensis BI429] Length = 178 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 3/91 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G++I+ +R A TQ+E+A + S ++ EN S SI + Sbjct: 3 KLGSKIRTLRVARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDLKTF 62 Query: 91 Y---DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + LD I + Sbjct: 63 FSNDKRQEKIVFKVKDRVPMYLDELGIKGFI 93 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G++++++R +G +Q E + S +S E + P I +I +V L Sbjct: 1 MLKLGSKIRTLRVARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDLK 60 Query: 171 WIYFGDEVIVPKSIK 185 + D+ K Sbjct: 61 TFFSNDKRQEKIVFK 75 >gi|158320850|ref|YP_001513357.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141049|gb|ABW19361.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 123 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G R+K +R+ + +++A + V+ +E I + + +E++ D++ Sbjct: 3 FGKRLKKLREEKSWQLEKVAKYLKVSIATVSNYERDFRKPDIDTINKIADLFEVTSDYLI 62 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK +R++K + K L + +T+SNYE+ P+I KI + + D+ Sbjct: 1 MTFGKRLKKLREEKSWQLEKVAKYLKVSIATVSNYERDFRKPDIDTINKIADLFEVTSDY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + ++ + K+ + N Sbjct: 61 LIGRTSIKDAILLENEDLPKELKEIGIEYLEVN 93 >gi|228477777|ref|ZP_04062405.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250469|gb|EEK09683.1| conserved domain protein [Streptococcus salivarius SK126] Length = 69 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R+ GM+Q + +G+ T+ + E R P ++ A KI QV K ++ ++ Sbjct: 10 NLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYNPSLEMALKIAQVFNKQVEELF 66 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + T +K++R+A TQ+++A + EN + S+ AL + + + + Sbjct: 6 KIKTNLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYNPSLEMALKIAQVFNKQVEEL 65 Query: 91 YDGE 94 + + Sbjct: 66 FRLK 69 >gi|215429297|ref|ZP_03427216.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289752506|ref|ZP_06511884.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289693093|gb|EFD60522.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 140 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 34/81 (41%) Query: 11 LKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS 70 + S ++ ++ + D+G+ I+ R+ + + +++A + ++ E G+ Sbjct: 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60 Query: 71 TSIRYALYLRNEYEISFDWIY 91 S + +S + +Y Sbjct: 61 PSADVLSQIAKALRVSAEVLY 81 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 31/73 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + ++S R+ +S + + G+ N LS E+G P +I + + + +Y Sbjct: 24 SFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVLYVR 83 Query: 176 DEVIVPKSIKRAK 188 ++ P + + Sbjct: 84 AGILEPSETSQVR 96 >gi|169631439|ref|YP_001705088.1| putative DNA-binding protein [Mycobacterium abscessus ATCC 19977] gi|169243406|emb|CAM64434.1| Putative DNA-binding protein [Mycobacterium abscessus] Length = 191 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 32/94 (34%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + V ++ R+ + ++A + + V+ E G+ + ++ L + Sbjct: 1 MTDHNTLVARNVRRYRQERALSLGDLARRSGLSKQTVSKIEQGVGNPTVETLALLGEALQ 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + +D A RL Sbjct: 61 VPPQRLLTEWGTPVFVQRASEDGWVDKGARSERL 94 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ R+++ +S + + G+ T+S EQG P ++ + + + + Sbjct: 10 RNVRRYRQERALSLGDLARRSGLSKQTVSKIEQGVGNPTVETLALLGEALQVPPQRLLT- 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 E P ++RA + K + ++ Sbjct: 69 -EWGTPVFVQRASEDGWVDKGARSER 93 >gi|218897381|ref|YP_002445792.1| DNA-binding protein [Bacillus cereus G9842] gi|228901027|ref|ZP_04065238.1| hypothetical protein bthur0014_22270 [Bacillus thuringiensis IBL 4222] gi|228965407|ref|ZP_04126494.1| hypothetical protein bthur0004_22380 [Bacillus thuringiensis serovar sotto str. T04001] gi|218544800|gb|ACK97194.1| DNA-binding protein [Bacillus cereus G9842] gi|228794238|gb|EEM41755.1| hypothetical protein bthur0004_22380 [Bacillus thuringiensis serovar sotto str. T04001] gi|228858624|gb|EEN03073.1| hypothetical protein bthur0014_22270 [Bacillus thuringiensis IBL 4222] Length = 185 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVILRNDVQAL 85 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LKSIR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFTSLI 67 >gi|149189925|ref|ZP_01868204.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii AK1] gi|148836240|gb|EDL53198.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii AK1] Length = 179 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A LK IRK KG+S KL G+ + L E+G + P I KI + + Sbjct: 12 AHLKQIRKHKGLSLDATAKLTGVSKAMLGQIERGESSPTISTLWKISSGLEASFSGFFAN 71 Query: 176 DEVIVPKSIKRAKGNQ 191 D V+ + + Sbjct: 72 DPVLRDSEMTFPEDEN 87 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + + +K IRK + A ++ + E G S +I + + E SF Sbjct: 6 FKSQIAAHLKQIRKHKGLSLDATAKLTGVSKAMLGQIERGESSPTISTLWKISSGLEASF 65 Query: 88 DWIYDGEV 95 + + Sbjct: 66 SGFFANDP 73 >gi|260062047|ref|YP_003195127.1| hypothetical protein RB2501_10657 [Robiginitalea biformata HTCC2501] gi|88783609|gb|EAR14780.1| hypothetical protein RB2501_10657 [Robiginitalea biformata HTCC2501] Length = 605 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 22/74 (29%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G + RK +Q+E+A + E G + ++ L + + + Sbjct: 3 LGENLIYQRKKQGLSQEELAGKTQVTVRTIQRIEKGDVNPHLQTVKLLAAALSVEVEDLM 62 Query: 92 DGEVIDRRYEDVTN 105 + Sbjct: 63 PIDNPREETIQAKW 76 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G L RK +G+SQ E + T+ E+G P ++ + + ++ Sbjct: 1 MTLGENLIYQRKKQGLSQEELAGKTQVTVRTIQRIEKGDVNPHLQTVKLLAAALSVEVED 60 Query: 172 IYFGDEVIVP 181 + D Sbjct: 61 LMPIDNPREE 70 >gi|76799152|ref|ZP_00781336.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76799661|ref|ZP_00781770.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76584989|gb|EAO61638.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76585504|gb|EAO62078.1| transcription regulator [Streptococcus agalactiae 18RS21] Length = 97 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 28/88 (31%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 IK R TQ E+A ++ +ENG + L + S + + Sbjct: 4 DNIKKARLDAGLTQLEVAEKLGVAQAQYARWENGGRNPKDETVEKLAEIFGTSLEILKGR 63 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + + L +K++ Sbjct: 64 DDGLEEIVSLLREYELTEADKNKIIKTL 91 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + +K R D G++Q+E + LG+ + + +E G P+ + K+ ++ L+ I Sbjct: 1 MLKDNIKKARLDAGLTQLEVAEKLGVAQAQYARWENGGRNPKDETVEKLAEIFGTSLE-I 59 Query: 173 YFGDEVIVPKSIKRAKGNQSSKKSK 197 G + + + + + + ++ K Sbjct: 60 LKGRDDGLEEIVSLLREYELTEADK 84 >gi|306832491|ref|ZP_07465643.1| cro/CI family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977208|ref|YP_004286924.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304425391|gb|EFM28511.1| cro/CI family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177136|emb|CBZ47180.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 164 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 132 FGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 + L + T+SN+E+G+T P+I I LD + GD I+ + +++ + Sbjct: 1 MAEKLYVSRQTISNWERGKTYPDINSLLLIATYFGISLDNLIKGDVDIMKHQVDQSQFKK 60 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%) Query: 50 MAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 MA ++ +E G I L + + IS D + G+V +++ ++ Sbjct: 1 MAEKLYVSRQTISNWERGKTYPDINSLLLIATYFGISLDNLIKGDVDIMKHQVDQSQ 57 >gi|270261480|ref|ZP_06189753.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044964|gb|EFA18055.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 185 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSLSAFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 V + + L Sbjct: 69 EPEKPDEPRIVIDHEDL 85 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 32/73 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ V L Sbjct: 6 LAPGKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSLSA 65 Query: 172 IYFGDEVIVPKSI 184 + E I Sbjct: 66 FFAEPEKPDEPRI 78 >gi|260437610|ref|ZP_05791426.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292809963|gb|EFF69168.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 108 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +GTRI+++RKA +Q+++A ++ ++ +EN L + S ++ Sbjct: 10 MGTRIREMRKAAGMSQEQLAEILCTKKATISAYENDHIDIKSSIVLEIAKALNCSGSYLL 69 Query: 92 DGEVID 97 +G+ + Sbjct: 70 EGKKAE 75 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R++ +RK GMSQ + ++L +T+S YE + +I + ++ Sbjct: 10 MGTRIREMRKAAGMSQEQLAEILCTKKATISAYENDHIDIKSSIVLEIAKALNCSGSYLL 69 Query: 174 FGDE 177 G + Sbjct: 70 EGKK 73 >gi|251781574|ref|YP_002995875.1| putative HTH-type transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390202|dbj|BAH80661.1| putative HTH-type transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126367|gb|ADX23664.1| DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 68 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 RI+++RKA + +Q E+A N + E G + S+ A L +++S + I+ Sbjct: 3 NRIQELRKARHISQAELADAMNVTRQTIISLEKGRYNASLELAYKLAIFFQLSIEEIF 60 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +RK + +SQ E + + T+ + E+GR ++ A K+ + ++ I+ Sbjct: 3 NRIQELRKARHISQAELADAMNVTRQTIISLEKGRYNASLELAYKLAIFFQLSIEEIFLF 62 Query: 176 DEVIVP 181 D+ Sbjct: 63 DQEESD 68 >gi|240145805|ref|ZP_04744406.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257202094|gb|EEV00379.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 87 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY-LRNEYE 84 ++ K +G+R+K R N TQ +A S + +ENG + + L L Sbjct: 4 KELRKLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALH 63 Query: 85 ISFDWIYDGEVIDRRYEDVTNKK 107 +S +W+ GE + + ++ Sbjct: 64 VSVEWL-KGETDEYETDITDKRE 85 Score = 43.8 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYF 174 +R+K R + ++Q + +G+ ST+ YE G K + + + ++W+ Sbjct: 12 SRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL-K 70 Query: 175 GDEVIVPKSIKRAKG 189 G+ I + Sbjct: 71 GETDEYETDITDKRE 85 >gi|227509640|ref|ZP_03939689.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191002|gb|EEI71069.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 198 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 4/95 (4%) Query: 28 YWKDVGT----RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + D+G ++ IR + +++ + + ++ EN S +I + Sbjct: 9 FTMDIGAIVSTNLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGL 68 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + +G V + + R+ Sbjct: 69 NVPYTALLEGRVETTKIIKKSAINEQKSADGHYRI 103 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 27/77 (35%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+ IR +KG S + +L G+ LS E T P I KI + G Sbjct: 20 NLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLNVPYTALLEGR 79 Query: 177 EVIVPKSIKRAKGNQSS 193 K A Q S Sbjct: 80 VETTKIIKKSAINEQKS 96 >gi|220909774|ref|YP_002485085.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866385|gb|ACL46724.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 99 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL 77 T++ P+ R + I+ IR+ TQ++ A+ + VN +EN S Sbjct: 7 TVLPAPKTRLAQPQISHLIRQIRQGMGLTQEQFAMVLGVTYTTVNRWENAHMQPSPLALK 66 Query: 78 YLRNEYE 84 + + Sbjct: 67 QICQMLK 73 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 I K RL I ++ IR+ G++Q +F +LG+ +T++ +E P Sbjct: 2 QIPPNTVLPAPKTRLAQPQISHLIRQIRQGMGLTQEQFAMVLGVTYTTVNRWENAHMQPS 61 Query: 155 IKPARKIKQVTK 166 ++I Q+ K Sbjct: 62 PLALKQICQMLK 73 >gi|187919345|ref|YP_001888376.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717783|gb|ACD19006.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 285 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/106 (11%), Positives = 34/106 (32%), Gaps = 5/106 (4%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P + D+G ++ R +Q +++ A + ++ E+G S + + Sbjct: 6 PVKKTPPNDLGILMRHWRDVRGISQLDLSFNAGVSQRHISFIESGRSVPSRQMLMDTAQA 65 Query: 83 YEISFDW----IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKD 124 +I + + N + + + +R+ Sbjct: 66 LDIPLRERNTLLLAAGYAPMYADAAWNAREMQSVTNALG-RMLRQH 110 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 ++ R +G+SQ++ G+ +S E GR++P + Q L Sbjct: 19 MRHWRDVRGISQLDLSFNAGVSQRHISFIESGRSVPSRQMLMDTAQALDIPL 70 >gi|219667096|ref|YP_002457531.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537356|gb|ACL19095.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 179 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 7/113 (6%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D+G+ I+ +RK + K++A S ++ E + S S+ + + Sbjct: 1 MADLGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPIS 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI------RKDKGMSQIEFGKL 135 + + ++ + G L+ + R G E L Sbjct: 61 SFFVNPQFTSTHIPAEAQRTI-QINPGMTLRFLINNVGQRNQLGAYIAEVADL 112 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +RK++ +S + + + S LS E+ P + KI + + Sbjct: 8 IRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPISSFF 63 >gi|83950311|ref|ZP_00959044.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83838210|gb|EAP77506.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 190 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A L+++RK +G++ LG LS E+ + P I RK+ V + ++ Sbjct: 14 ADLRALRKARGVTLAALADALGRSVGWLSQVERDLSEPSISDLRKMADVLGVPISMLF 71 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 25/71 (35%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G ++ +RKA T +A + ++ E + SI + + + Sbjct: 10 QTLGADLRALRKARGVTLAALADALGRSVGWLSQVERDLSEPSISDLRKMADVLGVPISM 69 Query: 90 IYDGEVIDRRY 100 ++ + Sbjct: 70 LFGQAMAPAEE 80 >gi|326331215|ref|ZP_08197509.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] gi|325950985|gb|EGD43031.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] Length = 84 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E ++ + ++ + R A +Q+E+A +SA+ E+G I L + Sbjct: 6 EDTAFYVGIAAQVTEHRVARGLSQRELAELCGTTQSAIARLESGSRPPKIDTLLRVAAAL 65 Query: 84 EISFD 88 + + Sbjct: 66 DCRLE 70 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 R +G+SQ E +L G S ++ E G P+I ++ L+ Sbjct: 20 EHRVARGLSQRELAELCGTTQSAIARLESGSRPPKIDTLLRVAAALDCRLE 70 >gi|313676267|ref|YP_004054263.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312942965|gb|ADR22155.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 178 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 31/93 (33%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + IK +R +Q MA + +E + SI + + + + I Sbjct: 1 MTKISNNIKYLRTEKGLSQTAMAEAVGLKRGNIASYEKELAQPSIENLVNIADYFGIDIH 60 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 I + ++ + ++ + ++ + Sbjct: 61 QIVNEDLQYSTKKVKHDRNPFKIFEENFPIQGL 93 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +K +R +KG+SQ + +G+ +++YE+ P I+ I + Sbjct: 1 MTKISNNIKYLRTEKGLSQTAMAEAVGLKRGNIASYEKELAQPSIENLVNIADYFGIDIH 60 Query: 171 WIYFGDEVIVPKSIKRAKG 189 I D K +K + Sbjct: 61 QIVNEDLQYSTKKVKHDRN 79 >gi|312977312|ref|ZP_07789060.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|310895743|gb|EFQ44809.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 69 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 R+K RK N TQ+++A + +E G + R L ++ DW+ Sbjct: 10 RLKRTRKNKNLTQEQLAEAVGLGVRTIGRYEQGSSFPNKRVLHELAKVLKVKTDWL 65 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 LK RK+K ++Q + + +G+ T+ YEQG + P + ++ +V K DW+ Sbjct: 11 LKRTRKNKNLTQEQLAEAVGLGVRTIGRYEQGSSFPNKRVLHELAKVLKVKTDWL 65 >gi|309774543|ref|ZP_07669569.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 3_1_53] gi|308917658|gb|EFP63372.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 3_1_53] Length = 71 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 +IK R + +Q+E+A + L E G + SI+ + + D ++ + Sbjct: 5 KIKMARMELDMSQEELANKVGATRQTIGLIEAGRYNPSIKLCIKICIALHKHLDDLFWED 64 Query: 95 VIDRRY 100 + D+ Sbjct: 65 IYDKEE 70 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 28/59 (47%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +K R + MSQ E +G T+ E GR P IK KI KHLD +++ D Sbjct: 6 IKMARMELDMSQEELANKVGATRQTIGLIEAGRYNPSIKLCIKICIALHKHLDDLFWED 64 >gi|306830136|ref|ZP_07463320.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304427662|gb|EFM30758.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 228 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 34/98 (34%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K RK TQKE+A A + +E G+ S L N +++ + Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSQEKVAQLENILKVAKGYFTQI 64 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIE 131 E++ K K + K M+ E Sbjct: 65 EIVRLYNSLSKQGKDKVVLYARNLAKEEQTQKVMTMPE 102 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 9/89 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK+ RK+ ++Q E + LG+ S +E+G P + +++ + K + Sbjct: 1 MYQPEKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSQEKVAQLENILKVAKGY 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 I+ + S K KDK Sbjct: 61 F---------TQIEIVRLYNSLSKQGKDK 80 >gi|296162693|ref|ZP_06845479.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295887081|gb|EFG66913.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 113 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ +RK TQ+ +A + + +E G S+ + ++ D + Sbjct: 3 IAARLATLRKQKGLTQQALADAIGLHITQIKRYEAGTSQPSLEAIKKIARTLRVTTDSLI 62 Query: 92 DGEVI 96 E Sbjct: 63 FEEEE 67 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +I ARL ++RK KG++Q +G+ + + YE G + P ++ +KI + + D Sbjct: 1 MSIAARLATLRKQKGLTQQALADAIGLHITQIKRYEAGTSQPSLEAIKKIARTLRVTTDS 60 Query: 172 IYFGDEVIVP 181 + F +E + P Sbjct: 61 LIFEEEELEP 70 >gi|294678861|ref|YP_003579476.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477681|gb|ADE87069.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 460 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G R+K +R+ TQ +A S +N EN ++ L L + + Sbjct: 6 MGVRLKRLREDRGITQASLARALEISPSYLNQIENNQRPLTVPVLLKLNAAFGLDV 61 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G RLK +R+D+G++Q + L + S L+ E + + K+ Sbjct: 1 MAKAFMGVRLKRLREDRGITQASLARALEISPSYLNQIENNQRPLTVPVLLKLNAAFGLD 60 Query: 169 LDWIYFGDEV 178 + ++ + Sbjct: 61 V-QLFSDADE 69 >gi|266622653|ref|ZP_06115588.1| putative helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288865608|gb|EFC97906.1| putative helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 195 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 27/86 (31%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I RK TQ+++A V+ +E G+ + L + Sbjct: 5 KVGRLILQFRKEKGLTQQQVADLLGISNKTVSKWERGLGCPDVSLWEGLSTVLGADIIKL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGA 116 GE+ R + +K Sbjct: 65 LQGELTPNRPDVGKLEKARFYVCPVC 90 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 35/68 (51%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 +D +G + RK+KG++Q + LLG+ N T+S +E+G P++ + V Sbjct: 1 MDCAKVGRLILQFRKEKGLTQQQVADLLGISNKTVSKWERGLGCPDVSLWEGLSTVLGAD 60 Query: 169 LDWIYFGD 176 + + G+ Sbjct: 61 IIKLLQGE 68 >gi|317473295|ref|ZP_07932590.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA] gi|316899131|gb|EFV21150.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA] Length = 180 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V IK +R+ + + ++ + +S + E G + +I + N ++ FD + Sbjct: 5 VAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDALT 64 Query: 92 DGEVIDRRYEDVTNKKRL 109 + + L Sbjct: 65 VRPKTPYEIIKTADIEPL 82 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K +R+ + +S KL G+ S L+ E+G P I KI K D + Sbjct: 7 KNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDAL 63 >gi|301057562|ref|ZP_07198642.1| cupin domain protein [delta proteobacterium NaphS2] gi|300448286|gb|EFK11971.1| cupin domain protein [delta proteobacterium NaphS2] Length = 221 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 28/75 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++G RIK R++ + ++ + + ++ E G + + + L + Sbjct: 32 EEEISPEMGVRIKKARESRGLSIFDVYLRTDIDVDTLSQIEEGNITPPLGTVIKLAKALD 91 Query: 85 ISFDWIYDGEVIDRR 99 + + GE Sbjct: 92 LKMGYFISGEEEKSY 106 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI 152 E R + ++ + +G R+K R+ +G+S + + TLS E+G Sbjct: 18 REEAIERGFNQSDFEEEISPEMGVRIKKARESRGLSIFDVYLRTDIDVDTLSQIEEGNIT 77 Query: 153 PEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSK-KSKKDKK 201 P + K+ + + + G+E ++R ++S+ SKK+++ Sbjct: 78 PPLGTVIKLAKALDLKMGYFISGEEEKSYTIVRRDDREKASRFDSKKEEQ 127 >gi|258507112|ref|YP_003169863.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|257147039|emb|CAR86012.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259648482|dbj|BAI40644.1| hypothetical protein [Lactobacillus rhamnosus GG] Length = 106 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 37/75 (49%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IKD R+A +++E+A N V+ +E G+ +I+ + + + E+S D + Sbjct: 3 IGEQIKDRREALAWSREELAQVVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 92 DGEVIDRRYEDVTNK 106 + ++ + Sbjct: 63 KSDPKLQKTIQIDKN 77 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K R+ S+ E +++ +S +E+G + P IK I + LD Sbjct: 1 MPIGEQIKDRREALAWSREELAQVVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDN 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + D PK K + ++++K++ Sbjct: 61 LIKSD----PKLQKTIQIDKNAKEASD 83 >gi|271966178|ref|YP_003340374.1| hypothetical protein Sros_4808 [Streptosporangium roseum DSM 43021] gi|270509353|gb|ACZ87631.1| hypothetical protein Sros_4808 [Streptosporangium roseum DSM 43021] Length = 223 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 1/92 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G R+ RK +++++A A ++ E + ++ L + + + Sbjct: 10 DLGRRVAWRRKELRLSREQLAGRAGIDPGYLSYLEETAAAPTLDTVRKLATALNTNVEEL 69 Query: 91 YDGEV-IDRRYEDVTNKKRLDPYAIGARLKSI 121 G + + T L+ L+ I Sbjct: 70 LGGTMGLPPGRGRPTPHPHLERLEAEECLRLI 101 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 RK+ +S+ + G+ LS E+ P + RK+ +++ + G + P Sbjct: 19 RKELRLSREQLAGRAGIDPGYLSYLEETAAAPTLDTVRKLATALNTNVEELLGGTMGLPP 78 >gi|229014216|ref|ZP_04171337.1| hypothetical protein bmyco0001_46210 [Bacillus mycoides DSM 2048] gi|229062694|ref|ZP_04200003.1| hypothetical protein bcere0026_47600 [Bacillus cereus AH603] gi|228716664|gb|EEL68361.1| hypothetical protein bcere0026_47600 [Bacillus cereus AH603] gi|228747170|gb|EEL97052.1| hypothetical protein bmyco0001_46210 [Bacillus mycoides DSM 2048] Length = 81 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 28/67 (41%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + R+++ R + +Q ++ ++L E G + SI +L + + Sbjct: 2 KKREDMKLQNRVREFRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFG 61 Query: 85 ISFDWIY 91 + I+ Sbjct: 62 APVEEIF 68 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 K+ + + R++ R +SQ + GK +G T+S E+G P I + KI Q+ Sbjct: 1 MKKREDMKLQNRVREFRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIF 60 Query: 166 KKHLDWIY 173 ++ I+ Sbjct: 61 GAPVEEIF 68 >gi|269798723|ref|YP_003312623.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269095352|gb|ACZ25343.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 127 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE--NGMCSTSIRYALYLR 80 P ++ + +G +I IR + N +Q+E+A S ++ E G+ S+ + Sbjct: 19 PFLQHQYVCLGHKIAIIRVSLNMSQQELARHIGISRSYLSKLECGTGISGMSLEILFKIA 78 Query: 81 NEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 ++I+ + VID + + + K ++K Sbjct: 79 QAFQINVGQLVRLRVIDYKNCNAHLTSHYKRLELLNHTKRTSRNK 123 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE--QGRTIPEIKPARKIKQVTKKH 168 +G ++ IR MSQ E + +G+ S LS E G + ++ KI Q + + Sbjct: 25 YVCLGHKIAIIRVSLNMSQQELARHIGISRSYLSKLECGTGISGMSLEILFKIAQAFQIN 84 Query: 169 LDWIY 173 + + Sbjct: 85 VGQLV 89 >gi|163869007|ref|YP_001610237.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018684|emb|CAK02242.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 135 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R+ +QK++ + + +E G+ + + +IS + + Sbjct: 13 IGKRIRLRREMLKISQKQLGDRLSVTFQQIQKYEKGLNRVGAGRLQEIADILDISI-FFF 71 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 ++ + + + ++ LKS R+ K Q Sbjct: 72 YADISTKEHVLLPYEEMTLSQEEHTLLKSFRELKPKQQKAI 112 Score = 42.6 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 + IG R++ R+ +SQ + G L + + YE+G ++I Sbjct: 1 MKAKNPHSNDILIGKRIRLRREMLKISQKQLGDRLSVTFQQIQKYEKGLNRVGAGRLQEI 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKS 202 + + + ++ D + + S++ KS Sbjct: 61 ADILDISI-FFFYADISTKEHVLLPYEEMTLSQEEHTLLKS 100 >gi|170721568|ref|YP_001749256.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169759571|gb|ACA72887.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 181 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 D GTR+K +R+ NN +Q+E+A + S ++ E S S+ L Sbjct: 2 DTGTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKL 50 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G RLK +R+ +SQ E + G+ NST+S EQ R P + +K+ + L Sbjct: 1 MDTGTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMTLAE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQS 192 + DE + + Q Sbjct: 61 FFSFDEPVREERFVFRASEQP 81 >gi|50914507|ref|YP_060479.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|40218541|gb|AAR83195.1| phage repressor protein [Streptococcus pyogenes] gi|50261586|gb|AAT72354.1| UmuD/MucA-like protein [Streptococcus pyogenes] gi|50903581|gb|AAT87296.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 229 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 30/84 (35%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R +Q +A N SA + +ENG + + + L ++ + Sbjct: 6 RLKQRRLEIKLSQTAIANQLNVHRSAYHNWENGRNTPNQKNLTALAAILDVPVTYFESEY 65 Query: 95 VIDRRYEDVTNKKRLDPYAIGARL 118 I Y ++ +L L Sbjct: 66 NIVNNYLQLSPDNQLKAEEYVEEL 89 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 22/61 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RLK R + +SQ L + S N+E GR P K + + + + Sbjct: 1 MFSHGRLKQRRLEIKLSQTAIANQLNVHRSAYHNWENGRNTPNQKNLTALAAILDVPVTY 60 Query: 172 I 172 Sbjct: 61 F 61 >gi|37527342|ref|NP_930686.1| hypothetical protein plu3469 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786776|emb|CAE15842.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 399 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 3/102 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ IR+A ++ + ++ S + +ENG S L W Sbjct: 11 ERLTQIREARGLSKINLGRLVDRSPSTITKWENGNHSPDAEVLHSLSQILNCPVSWF--T 68 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 + I + + + L A + S R G Q K+ Sbjct: 69 KPIVKYEKKPVFFRTLSTTAKDLCIASERYM-GWFQELSCKM 109 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 RL IR+ +G+S+I G+L+ ST++ +E G P+ + + Q+ + W Sbjct: 11 ERLTQIREARGLSKINLGRLVDRSPSTITKWENGNHSPDAEVLHSLSQILNCPVSWF 67 >gi|329847523|ref|ZP_08262551.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842586|gb|EGF92155.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 469 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 11/120 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R N +Q +MA S +N E + + L L Y++ Sbjct: 10 LGGRLKRLRYDLNLSQTQMAEDLGVSPSYLNHLERNQRPVTAQVLLKLAATYDLD----L 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 D + + + L+ + + E +L+ T + Sbjct: 66 RTFTDDSEPSGEADLVEIFADPLFKDLR-------LPRREISELVASSPMTAEAITRLYR 118 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 LK +R D +SQ + + LG+ S L++ E+ + + K+ L Sbjct: 14 LKRLRYDLNLSQTQMAEDLGVSPSYLNHLERNQRPVTAQVLLKLAATYDLDL 65 >gi|307244410|ref|ZP_07526521.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306492229|gb|EFM64271.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 63 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 24/61 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ R+ TQ E++ ++ E +I+ A ++S + ++ Sbjct: 1 MGNNLRQFREKRGFTQTELSTAVGISRQYLSDIETLKKQPTIKIAFDCARVLKVSIEELF 60 Query: 92 D 92 Sbjct: 61 Y 61 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G L+ R+ +G +Q E +G+ LS+ E + P IK A +V K ++ ++ Sbjct: 1 MGNNLRQFREKRGFTQTELSTAVGISRQYLSDIETLKKQPTIKIAFDCARVLKVSIEELF 60 Query: 174 F 174 + Sbjct: 61 Y 61 >gi|296161350|ref|ZP_06844157.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295888336|gb|EFG68147.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 124 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 4/104 (3%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R+K R+ +Q E+A + A +E G+ S Y + + + ++ G Sbjct: 7 RLKQERRRLRMSQAELASAGGVQKHAQLNYEKGLRSPDTSYLVGIAEA-GVDVLYLLTGR 65 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM 138 D + + A LK +R+ +G+ + G+ Sbjct: 66 TSDPATLALDPDEE-RLLAGYRELK-LREKRGV-LALVAAMTGV 106 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK R+ MSQ E G+ NYE+G P+ I + + ++ G Sbjct: 8 LKQERRRLRMSQAELASAGGVQKHAQLNYEKGLRSPDTSYLVGIAEA-GVDVLYLLTG 64 >gi|260463755|ref|ZP_05811952.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259030352|gb|EEW31631.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 ++G ++ +R+ + T +E++ S ++ EN S S L + I Sbjct: 4 QPNLGDCLRALRRTHGWTLQEVSTLTGVAVSTLSKVENDQMSLSYDKLLQICEGLGIHVT 63 Query: 89 WIYDGE 94 + G+ Sbjct: 64 ELLSGD 69 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L+++R+ G + E L G+ STLS E + +I + H+ + GD Sbjct: 10 CLRALRRTHGWTLQEVSTLTGVAVSTLSKVENDQMSLSYDKLLQICEGLGIHVTELLSGD 69 Query: 177 EVIVPKSIKRAKGNQSSKKSK 197 +R+ +QS+ + Sbjct: 70 RKQPSARTRRSVTSQSNTLRQ 90 >gi|228966939|ref|ZP_04127977.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228792673|gb|EEM40237.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 18/66 (27%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G +K R + + TQ E S V E + + +S D + Sbjct: 4 FGQNLKKFRSSRSLTQSEFGERVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALM 63 Query: 92 DGEVID 97 Sbjct: 64 GRTSTP 69 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G LK R + ++Q EFG+ + + S + N E P++ +I +D Sbjct: 1 MNTFGQNLKKFRSSRSLTQSEFGERVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVD 60 Query: 171 WIYFGDEVIVPKSIKRA 187 + K+I A Sbjct: 61 ALMGRTSTPHEKNIANA 77 >gi|196037572|ref|ZP_03104883.1| conserved domain protein [Bacillus cereus NVH0597-99] gi|218235301|ref|YP_002365690.1| hypothetical protein BCB4264_A0957 [Bacillus cereus B4264] gi|296501634|ref|YP_003663334.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296506639|ref|YP_003667873.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|196031814|gb|EDX70410.1| conserved domain protein [Bacillus cereus NVH0597-99] gi|218163258|gb|ACK63250.1| conserved domain protein [Bacillus cereus B4264] gi|296322686|gb|ADH05614.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296327226|gb|ADH10153.1| Transcriptional regulator [Bacillus thuringiensis BMB171] Length = 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++IK R TQ+E+A+ N + L E + S++ + + + + D ++ Sbjct: 4 SKIKIARTEKGLTQQELAVLVNVTRQTIGLIELNKYNPSLKLCIDIAKSLDKTLDELFWE 63 Query: 94 EV 95 E Sbjct: 64 EK 65 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++K R +KG++Q E L+ + T+ E + P +K I + K LD + Sbjct: 1 MSVSKIKIARTEKGLTQQELAVLVNVTRQTIGLIELNKYNPSLKLCIDIAKSLDKTLDEL 60 Query: 173 YFGDE 177 ++ ++ Sbjct: 61 FWEEK 65 >gi|52842273|ref|YP_096072.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629384|gb|AAU28125.1| hypothetical phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 207 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RIK+ RK T ++A ++ +E G + + A L + +S W+ Sbjct: 14 KIGLRIKESRKNKKFTAVQLAEVTGFSAQRISNWERGTRTPRFKDAEILGSALGVSPTWL 73 Query: 91 YDGEVI 96 ++ Sbjct: 74 LFLDID 79 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K RK+K + ++ ++ G +SN+E+G P K A + W+ F D Sbjct: 19 IKESRKNKKFTAVQLAEVTGFSAQRISNWERGTRTPRFKDAEILGSALGVSPTWLLFLDI 78 Query: 178 VIVP 181 P Sbjct: 79 DHKP 82 >gi|16127394|ref|NP_421958.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221236203|ref|YP_002518640.1| transcriptional regulator [Caulobacter crescentus NA1000] gi|13424834|gb|AAK25126.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220965376|gb|ACL96732.1| hypothetical transcriptional regulatory protein [Caulobacter crescentus NA1000] Length = 156 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 2/107 (1%) Query: 12 KSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 K++ E T P VG R++ RK +Q+++A V +E G Sbjct: 12 KNMSEETEGRRPNPVDLH--VGGRVRMRRKLLGVSQEQLADSLGLTFQQVQKYERGANRV 69 Query: 72 SIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 S + ++ + +DG + + + L Sbjct: 70 SASKLYEIAKTLQVPVSFFFDGLADPMNGAEADDAGLHAEKVVQEFL 116 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ RK G+SQ + LG+ + YE+G +I + + + + + G Sbjct: 34 VRMRRKLLGVSQEQLADSLGLTFQQVQKYERGANRVSASKLYEIAKTLQVPVSFFFDG 91 >gi|311032601|ref|ZP_07710691.1| DNA-binding protein [Bacillus sp. m3-13] Length = 409 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ +RK T + +A GA + ++L EN + S+ Y+ ++ + + Sbjct: 2 LGDRIRKLRKQKKMTLEALA-GAGLTKGMLSLIENNKANPSMESLTYIAHQLGVDVSDLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGA 116 + + + +++ Sbjct: 61 GEGNTEELRKTLERVEQIYNVPFSK 85 Score = 47.6 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G R++ +RK K M+ G+ LS E + P ++ I + + Sbjct: 1 MLGDRIRKLRKQKKMTLEALAGA-GLTKGMLSLIENNKANPSMESLTYIAHQLGVDVSDL 59 Query: 173 YF-GDEVIVPKSIKRAKGNQSSKKSKKD 199 G+ + K+++R + + SK D Sbjct: 60 LGEGNTEELRKTLERVEQIYNVPFSKSD 87 >gi|310815800|ref|YP_003963764.1| transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308754535|gb|ADO42464.1| transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 200 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + +RK N T E++ S ++ ENG+ + + + L + ++ + Sbjct: 11 GALLAALRKQNGWTLAEVSGRTGVSISTLSKIENGVSAPAYSVLVRLADGLQLDISALL 69 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 +RL A GA L ++RK G + E G+ STLS E G + P ++ Sbjct: 2 NERLKENAPGALLAALRKQNGWTLAEVSGRTGVSISTLSKIENGVSAPAYSVLVRLADGL 61 Query: 166 KKHLDWIY 173 + + + Sbjct: 62 QLDISALL 69 >gi|269797236|ref|YP_003311136.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269093865|gb|ACZ23856.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 64 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + ++K R G+SQ E +G+ +T+++ E G+TIP +K A I V + ++ ++ Sbjct: 1 MANKIKLYRTMLGLSQHELAGKVGVTRATINSIENGKTIPSLKLANDIAVVLGRSINDVF 60 Query: 174 F 174 + Sbjct: 61 Y 61 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +IK R +Q E+A + +N ENG S++ A + S + ++ Sbjct: 1 MANKIKLYRTMLGLSQHELAGKVGVTRATINSIENGKTIPSLKLANDIAVVLGRSINDVF 60 Query: 92 D 92 Sbjct: 61 Y 61 >gi|254462341|ref|ZP_05075757.1| hypothetical protein RB2083_2932 [Rhodobacterales bacterium HTCC2083] gi|206678930|gb|EDZ43417.1| hypothetical protein RB2083_2932 [Rhodobacteraceae bacterium HTCC2083] Length = 68 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +K R TQ +A ++N EN + + S AL + + E S Sbjct: 1 MAKLHNTLKAHRTDKGFTQASLAEAVGVSRKSINTIENRVFTPSTLLALQIADALECSVH 60 Query: 89 WIYDGEVI 96 I+ + Sbjct: 61 DIFYVKGD 68 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + LK+ R DKG +Q + +G+ +++ E P A +I + + Sbjct: 1 MAKLHNTLKAHRTDKGFTQASLAEAVGVSRKSINTIENRVFTPSTLLALQIADALECSVH 60 Query: 171 WIYF 174 I++ Sbjct: 61 DIFY 64 >gi|190895203|ref|YP_001985496.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700864|gb|ACE94946.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 162 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 40/117 (34%) Query: 7 LETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN 66 + +S ++ + I VG +I+ R ++ + ++ G V +E+ Sbjct: 10 VRSSTRAPAAQSSIARESAHPVDLHVGQQIRIRRMQSDVSLGDLGAGIGVSLQQVQKYES 69 Query: 67 GMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 G S L N +I ++G +D + ++D R+ Sbjct: 70 GKNRVSASMLYELANCLKIPVSKFFEGLPDPETSQDAIHATKIDDRIAYISTAEGRR 126 Score = 41.5 bits (96), Expect = 0.070, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++ R +S + G +G+ + YE G+ ++ K + Sbjct: 33 LHVGQQIRIRRMQSDVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSK 92 Query: 172 IYFGDEVIVPKSIKRA 187 + G + P++ + A Sbjct: 93 FFEG--LPDPETSQDA 106 >gi|187778017|ref|ZP_02994490.1| hypothetical protein CLOSPO_01609 [Clostridium sporogenes ATCC 15579] gi|187774945|gb|EDU38747.1| hypothetical protein CLOSPO_01609 [Clostridium sporogenes ATCC 15579] Length = 65 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++++IRK Q+E+A ++ ENG + SI A + + + + I+ Sbjct: 3 NKLEEIRKERGIKQEELADILEVSRQTISSLENGRYNPSIILAFKIARYFNKNIEDIFIY 62 Query: 94 EVI 96 E Sbjct: 63 EEE 65 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 37/65 (56%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +L+ IRK++G+ Q E +L + T+S+ E GR P I A KI + K+++ I+ Sbjct: 1 MKNKLEEIRKERGIKQEELADILEVSRQTISSLENGRYNPSIILAFKIARYFNKNIEDIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IYEEE 65 >gi|27366645|ref|NP_762172.1| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|320158536|ref|YP_004190914.1| putative transcriptional regulator [Vibrio vulnificus MO6-24/O] gi|27358211|gb|AAO07162.1|AE016808_182 Predicted transcriptional regulator [Vibrio vulnificus CMCP6] gi|319933848|gb|ADV88711.1| predicted transcriptional regulator [Vibrio vulnificus MO6-24/O] Length = 207 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Query: 15 QEYTLIITPEIRQYWKD---VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 + +L + E ++ + +G RIK++R T +E + S ++ EN S Sbjct: 8 EYPSLTLAKESQEQNIEPLKLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQISP 67 Query: 72 SIRYALYLRNEYEISFDWIYD 92 + + L + +I +++ Sbjct: 68 TFQAMQKLAHGLKIDMPQLFE 88 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 6/113 (5%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 E + ++ ++P +G R+K +R G++ E + G+ STLS E + Sbjct: 5 LYDEYPSLTLAKESQEQNIEPLKLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQ 64 Query: 151 TIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSS 203 P + +K+ K + ++ P K A G + + + K Sbjct: 65 ISPTFQAMQKLAHGLKIDMPQLF------EPPRKKVATGRRDITLAGQGKPHP 111 >gi|49185356|ref|YP_028608.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49477744|ref|YP_036632.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65319812|ref|ZP_00392771.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|229122064|ref|ZP_04251280.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|49179283|gb|AAT54659.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49329300|gb|AAT59946.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228661407|gb|EEL17031.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] Length = 69 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI R TQ+E+A + E + S+ A + N +E ++ Sbjct: 5 LHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITDVF 64 Query: 92 DGEVI 96 D + Sbjct: 65 DYQEE 69 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 R+ R +KG +Q E K +G+ T++ E+ + P + A KI V +K + ++ Sbjct: 6 HNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITDVFD 65 Query: 175 GDEV 178 E Sbjct: 66 YQEE 69 >gi|125973071|ref|YP_001036981.1| transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004574|ref|ZP_05429552.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417266|ref|ZP_06248286.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713296|gb|ABN51788.1| transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|255991446|gb|EEU01550.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408668|gb|EFB38926.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940708|gb|ADU74742.1| Cupin 2 conserved barrel domain protein [Clostridium thermocellum DSM 1313] Length = 183 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 27/77 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + K + RIK++R+ + + + +A +E+G + + + Sbjct: 1 MSEQIKQISKRIKELREISGISAETLARELGIDSKTYTEYESGNVDIPVSLLFKIAGRFN 60 Query: 85 ISFDWIYDGEVIDRRYE 101 + I GE Sbjct: 61 VELSEILTGEAPKLHTY 77 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 34/86 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R+K +R+ G+S + LG+ + T + YE G + KI L I G Sbjct: 10 KRIKELREISGISAETLARELGIDSKTYTEYESGNVDIPVSLLFKIAGRFNVELSEILTG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 + + K S + +KD K Sbjct: 70 EAPKLHTYCVVRKDKGVSVERRKDYK 95 >gi|332706307|ref|ZP_08426372.1| putative transcriptional regulator [Lyngbya majuscula 3L] gi|332707822|ref|ZP_08427849.1| putative transcriptional regulator [Lyngbya majuscula 3L] gi|332353525|gb|EGJ33038.1| putative transcriptional regulator [Lyngbya majuscula 3L] gi|332354924|gb|EGJ34399.1| putative transcriptional regulator [Lyngbya majuscula 3L] Length = 70 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI--RYALYLRNEYEIS 86 ++G +K R++ N TQ+E+A + V +E G + L + +++ Sbjct: 1 MTNLGDNLKKRRESLNITQREIAHELGVTVTTVQNWEAGRHIPKLYPNQLKALCDLLKVT 60 Query: 87 FDWI 90 D + Sbjct: 61 LDEL 64 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEI--KPARKIKQVTKKHLDWI 172 LK R+ ++Q E LG+ +T+ N+E GR IP++ + + + K LD + Sbjct: 7 NLKKRRESLNITQREIAHELGVTVTTVQNWEAGRHIPKLYPNQLKALCDLLKVTLDEL 64 >gi|325688189|gb|EGD30208.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] gi|327469056|gb|EGF14528.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 225 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 3/92 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N TQ + + +ENG+ + L ++ ++ D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 94 EV--IDRRYEDVTNKKRLDPYAIGARLKSIRK 123 +KK +D A L+ RK Sbjct: 65 TSTLYTYPLLTPPHKKEVDQLAS-QLLERQRK 95 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R + ++Q + LG+ T S +E G P K R++ K ++ Sbjct: 1 MFSHEKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENY 60 Query: 172 IY 173 Sbjct: 61 FV 62 >gi|255526451|ref|ZP_05393362.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296184825|ref|ZP_06853236.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255509833|gb|EET86162.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296050607|gb|EFG90030.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 240 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 36/80 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I + ++G +I++ RK+ N T +++A ++ +++V+ +E G I + Sbjct: 2 INELTCEIGKKIRNCRKSKNITMQQLADIIHKSKASVSKYEKGDIVVDIVTLYDIAAALN 61 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 I + + + + + Sbjct: 62 IHIEQLLYSQPVPNITLENK 81 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 29/59 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++++ RK K ++ + ++ +++S YE+G + +I I H++ + + Sbjct: 11 KKIRNCRKSKNITMQQLADIIHKSKASVSKYEKGDIVVDIVTLYDIAAALNIHIEQLLY 69 >gi|239833118|ref|ZP_04681447.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239825385|gb|EEQ96953.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 128 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDW 89 G R++++R+ TQKEMA + ++ E+G + + + I +D Sbjct: 4 FGIRLRELREERGVTQKEMAAALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE 62 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDW 171 L+ +R+++G++Q E L + + LS E GR P ++I D Sbjct: 8 LRELREERGVTQKEMAAALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE 62 >gi|258654029|ref|YP_003203185.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557254|gb|ACV80196.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 64 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 ++ +R+A TQ +A VN E G S+ A + ++ + + ++D + Sbjct: 5 LRSLREAKGWTQGALADRLEVSRQTVNALETGKYDPSLPLAFRIARLFDRAIEEVFDPD 63 Score = 61.5 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + L+S+R+ KG +Q L + T++ E G+ P + A +I ++ + ++ ++ Sbjct: 1 MKNSLRSLREAKGWTQGALADRLEVSRQTVNALETGKYDPSLPLAFRIARLFDRAIEEVF 60 Query: 174 FGD 176 D Sbjct: 61 DPD 63 >gi|256422859|ref|YP_003123512.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037767|gb|ACU61311.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 87 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 26/73 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + +R + ++MA ++ +E G S + L +++S D + Sbjct: 7 FGDNLTYLRHLRGISVQDMADMFCVHKATFRYWERGRSSPGYETLVKLSEYFQVSVDNLL 66 Query: 92 DGEVIDRRYEDVT 104 + D + Sbjct: 67 KVRIRDNAKAAIQ 79 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 G L +R +G+S + + + +T +E+GR+ P + K+ + + +D Sbjct: 4 NITFGDNLTYLRHLRGISVQDMADMFCVHKATFRYWERGRSSPGYETLVKLSEYFQVSVD 63 Query: 171 WIYF 174 + Sbjct: 64 NLLK 67 >gi|228475756|ref|ZP_04060474.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|314935413|ref|ZP_07842766.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] gi|228270538|gb|EEK11973.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|313656748|gb|EFS20487.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] Length = 67 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R Q ++A A V+L E + SI A+ + + + I+ Sbjct: 3 NRLKELRAREGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAIKIARIFNEPVESIFII 62 Query: 94 EVID 97 E D Sbjct: 63 EEED 66 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R +G +Q + K G+ T+S E+ P I A KI ++ + ++ I+ Sbjct: 1 MRNRLKELRAREGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAIKIARIFNEPVESIF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IIEEE 65 >gi|227505364|ref|ZP_03935413.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198066|gb|EEI78114.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length = 116 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 6/69 (8%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE------NGMCSTSIRYALYLRNEYE 84 D +R+++ R+ +QK +A + S ++ E N + L E Sbjct: 14 DFASRLRETRERRGMSQKALAEISGVSRSQISNLERTDKALNLRADPQLSTLFKLAYALE 73 Query: 85 ISFDWIYDG 93 + + G Sbjct: 74 VPPSLLLPG 82 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 9/78 (11%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE------QGRTIPEIKPARKIKQVT 165 + +RL+ R+ +GMSQ ++ G+ S +SN E R P++ K+ Sbjct: 13 HDFASRLRETRERRGMSQKALAEISGVSRSQISNLERTDKALNLRADPQLSTLFKLAYAL 72 Query: 166 KKHLDWIY---FGDEVIV 180 + + GDEV+ Sbjct: 73 EVPPSLLLPGGVGDEVVA 90 >gi|157374197|ref|YP_001472797.1| XRE family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157316571|gb|ABV35669.1| transcriptional regulator, XRE family [Shewanella sediminis HAW-EB3] Length = 184 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+GT +K +RK +Q+E+A A S +++ E S S+ + + +S Sbjct: 4 DIGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDF 63 Query: 91 YDGEV 95 + E Sbjct: 64 FSMED 68 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG LK++RK KG+SQ E K G+ NST+S E+ P + +K+ L Sbjct: 2 HLDIGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLV 61 Query: 171 WIYFGDEVIVPKSIKRAKGNQ 191 + ++ + + ++ Sbjct: 62 DFFSMEDSGGSEQKVVYRSDE 82 >gi|104780997|ref|YP_607495.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95109984|emb|CAK14689.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 104 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 +G ++ RK + TQ ++ ++ FE G + SI + + Sbjct: 6 LGPALRRYRKLASLTQAQLGERTGFDPKTISRFETGTYTPSIEALMNFAEALGV 59 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ RK ++Q + G+ G T+S +E G P I+ + + + Sbjct: 10 LRRYRKLASLTQAQLGERTGFDPKTISRFETGTYTPSIEALMNFAEALGVKPKVFFAEPD 69 Query: 178 VIVPKS 183 + Sbjct: 70 DEEEQR 75 >gi|24372846|ref|NP_716888.1| transcriptional regulator, putative [Shewanella oneidensis MR-1] gi|24346951|gb|AAN54333.1|AE015570_7 transcriptional regulator, putative [Shewanella oneidensis MR-1] Length = 182 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY--------LRNE 82 D+G ++ +RK +Q+E+A A S +++ E S S+ L + Sbjct: 2 DIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDF 61 Query: 83 YEI 85 + I Sbjct: 62 FSI 64 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 IGA L+++RK KG+SQ E K G+ NST+S E+ P + +K Sbjct: 1 MDIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKK 49 >gi|325842151|ref|ZP_08167616.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325489717|gb|EGC92075.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 68 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 R++++RKA Q+E+A ++ E G + SI A + + ++ Sbjct: 3 NRLEELRKARGINQEELATILEVSRQTISSLEKGRYNPSIVLAFKIARYFGLT 55 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + RL+ +RK +G++Q E +L + T+S+ E+GR P I A KI + Sbjct: 1 MKNRLEELRKARGINQEELATILEVSRQTISSLEKGRYNPSIVLAFKIARYFGLT 55 >gi|323352770|ref|ZP_08087740.1| transcriptional repressor [Streptococcus sanguinis VMC66] gi|322121806|gb|EFX93552.1| transcriptional repressor [Streptococcus sanguinis VMC66] Length = 225 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N TQ + + +ENG+ + L ++ ++ D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDK 64 Query: 94 EV--IDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + +KK +D +A L+ RK Sbjct: 65 TSALYTYPLLTLPHKKEVDQFASR-LLERQRK 95 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R + ++Q + LG+ T S +E G P K R++ K ++ Sbjct: 1 MFSHEKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENY 60 Query: 172 IY 173 Sbjct: 61 FV 62 >gi|293418613|ref|ZP_06661048.1| regulatory protein CI bacteriophage origin [Escherichia coli B088] gi|291325141|gb|EFE64556.1| regulatory protein CI bacteriophage origin [Escherichia coli B088] Length = 251 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R A TQK + ++A+ E G + + + + + N + +W+ Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTK-IVEIANALGVRAEWLS 85 Query: 92 DG 93 G Sbjct: 86 SG 87 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R +G++Q G L+G+ + + E G+ K I +W+ G Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVE-IANALGVRAEWLSSG 87 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + +++ + S K Sbjct: 88 VGNMSDSTVQPIQTTVSHSK 107 >gi|229148192|ref|ZP_04276495.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus BDRD-ST24] gi|228635204|gb|EEK91731.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus BDRD-ST24] Length = 113 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G ++K++R + TQ+E+A G + + FEN ++ + + ++++ D++ Sbjct: 3 FGEKLKELRGSR--TQEEVAKGIEISRARYSHFENDRNEPDLQLIQKIADYHKVTTDYLL 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 R ++ K + + + Sbjct: 61 GRAEDSRLTKEDDEKATEMAKRLEKLIAEL 90 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 G +LK +R + +Q E K + + + S++E R P+++ +KI K D+ Sbjct: 1 MTFGEKLKELRGSR--TQEEVAKGIEISRARYSHFENDRNEPDLQLIQKIADYHKVTTDY 58 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKK 198 + E K + +K+ +K Sbjct: 59 LLGRAEDSRLTKEDDEKATEMAKRLEK 85 >gi|268592288|ref|ZP_06126509.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291312067|gb|EFE52520.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 92 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK + +A E +E G SI N ++I+ + + Sbjct: 11 IGNKIKSLRKNKGLSLTALAKTVGISEQQQLRYERGNNRISIDRLKQYSNYFDINIIYFF 70 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++KS+RK+KG+S K +G+ YE+G I ++ ++ + Sbjct: 10 VIGNKIKSLRKNKGLSLTALAKTVGISEQQQLRYERGNNRISIDRLKQYSNYFDINIIYF 69 Query: 173 YFGDEVIVPK 182 + E K Sbjct: 70 FSFSEDEKTK 79 >gi|210614614|ref|ZP_03290233.1| hypothetical protein CLONEX_02447 [Clostridium nexile DSM 1787] gi|210150661|gb|EEA81670.1| hypothetical protein CLONEX_02447 [Clostridium nexile DSM 1787] gi|295108107|emb|CBL22060.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 74 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y+ +++ R K MSQ E L+G+ T+ E+ R P + A I +V ++ Sbjct: 6 YSFDSKIHIYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVAIED 65 Query: 172 IYFGDE 177 ++ +E Sbjct: 66 LFDFEE 71 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++I R +Q+E+A + E + S+ A + ++++ + ++D Sbjct: 10 SKIHIYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVAIEDLFDF 69 Query: 94 EV 95 E Sbjct: 70 EE 71 >gi|206562215|ref|YP_002232978.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] gi|198038255|emb|CAR54209.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] Length = 126 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 3/92 (3%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 R++ RK Q E A + A +E G + Y + + + + ++ G Sbjct: 10 RLRLERKRLGMNQTEFAAAGGVQQHAQVNYEKGARLPDVSYLVGIAD-LGVDVQYLLTGR 68 Query: 95 VIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 D +T+ + L A LK +R+ +G Sbjct: 69 TSDPVTLALTSDEEL-LLAGFRELK-LRERRG 98 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ RK GM+Q EF G+ NYE+G +P++ I + ++ G Sbjct: 11 LRLERKRLGMNQTEFAAAGGVQQHAQVNYEKGARLPDVSYLVGIAD-LGVDVQYLLTG 67 >gi|169343406|ref|ZP_02864410.1| regulator SinR [Clostridium perfringens C str. JGS1495] gi|169298492|gb|EDS80578.1| regulator SinR [Clostridium perfringens C str. JGS1495] Length = 204 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 53/154 (34%), Gaps = 15/154 (9%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDW 89 ++ +I R+ ++ ++A + + ENG + S+ + + N E Sbjct: 2 NLNEKITFYREKKGISKSQLAREIGVSPAYITKLENGEKSNPSLELKIKIANVLEQPITV 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 + ++++ +KS + ++ + K+ G+ L + + G Sbjct: 62 FLENDIVNNNIGSK--------------IKSAKILNNLNDEQLSKITGIDKLKLRSIQDG 107 Query: 150 RTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKS 183 P I + K D+ V + ++ Sbjct: 108 EINPTKIELEIISKALKLQADYFTKDSNVNIDET 141 Score = 43.8 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLD 170 + ++ R+ KG+S+ + + +G+ + ++ E ++ P ++ KI V ++ + Sbjct: 1 MNLNEKITFYREKKGISKSQLAREIGVSPAYITKLENGEKSNPSLELKIKIANVLEQPIT 60 Query: 171 WIYFGD 176 D Sbjct: 61 VFLEND 66 >gi|311748183|ref|ZP_07721968.1| hypothetical protein ALPR1_17828 [Algoriphagus sp. PR1] gi|126576672|gb|EAZ80920.1| hypothetical protein ALPR1_17828 [Algoriphagus sp. PR1] Length = 63 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 36/63 (57%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R++ R KGM+Q + +++G+ T++ E+ + P + A K+ ++ +K ++ I+ Sbjct: 1 MKNRVRDFRTAKGMTQEDLAEIIGVSRQTINAIEKEKFDPSLPTAFKMSKLFEKPIEDIF 60 Query: 174 FGD 176 + Sbjct: 61 QFE 63 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++D R A TQ+++A +N E S+ A + +E + I+ Sbjct: 3 NRVRDFRTAKGMTQEDLAEIIGVSRQTINAIEKEKFDPSLPTAFKMSKLFEKPIEDIFQF 62 Query: 94 E 94 E Sbjct: 63 E 63 >gi|86158311|ref|YP_465096.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774822|gb|ABC81659.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 136 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 2/84 (2%) Query: 6 FLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE 65 F E L+E + E R+ DV ++ +R+ TQ ++A + ++ E Sbjct: 20 FDEYLTGQLRERDFGVHYEQRRLVHDVAIAVRSMRENAGLTQAQLAEIVGTSQPSIARME 79 Query: 66 NG--MCSTSIRYALYLRNEYEISF 87 G + + + Sbjct: 80 KGLDQRTPRWETLHKIARALGKNL 103 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 49/104 (47%), Gaps = 3/104 (2%) Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 I FD G++ +R + ++RL A ++S+R++ G++Q + +++G ++ Sbjct: 17 GIRFDEYLTGQLRERDFGVHYEQRRLVHDVAIA-VRSMRENAGLTQAQLAEIVGTSQPSI 75 Query: 144 SNYEQ--GRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIK 185 + E+ + P + KI + K+L + + + ++ Sbjct: 76 ARMEKGLDQRTPRWETLHKIARALGKNLRFSFEDADDGADVLVE 119 >gi|50085480|ref|YP_046990.1| hypothetical protein ACIAD2393 [Acinetobacter sp. ADP1] gi|49531456|emb|CAG69168.1| hypothetical protein; putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 110 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G ++ +RK TQ+++A ++ +S ++ ENG S YL + S I Sbjct: 2 DIGRAVRFLRKRQGWTQQQLADFSHTSKSNISNLENGNQGYSPAILEYLAKAFNCSVSQI 61 Query: 91 YDGEVIDRRYED---VTNKKRLDPYAIG 115 + + +D I Sbjct: 62 FLLAENMDNEGNLLKDWQHMPIDVLFIQ 89 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 ++ +RK +G +Q + S +SN E G + + + I+ E Sbjct: 7 VRFLRKRQGWTQQQLADFSHTSKSNISNLENGNQGYSPAILEYLAKAFNCSVSQIFLLAE 66 Query: 178 VIVPK 182 + + Sbjct: 67 NMDNE 71 >gi|23016781|ref|ZP_00056533.1| COG0703: Shikimate kinase [Magnetospirillum magnetotacticum MS-1] Length = 290 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 35/96 (36%) Query: 19 LIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 ++ E + +G R+K R ++K+++ A E + E G + S+ Sbjct: 1 MVEQAEFAVLSRRLGDRVKAFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWL 60 Query: 79 LRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAI 114 L + + + + E + KK LD Sbjct: 61 LAQAMDTAITDLIEAESETGHPDLPLAKKFLDQLNP 96 Score = 38.8 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K+ R +GMS+ + G+ L+ E G+ + + Q + + + Sbjct: 18 VKAFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAMDTAITDLIEAES 77 Query: 178 VIVPKSIKRAK 188 + AK Sbjct: 78 ETGHPDLPLAK 88 >gi|329935581|ref|ZP_08285391.1| regulatory protein [Streptomyces griseoaurantiacus M045] gi|329304926|gb|EGG48796.1| regulatory protein [Streptomyces griseoaurantiacus M045] Length = 295 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 18 TLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY 75 TL + E R+ + +G R++ +R T +A A + V+ E G S+ Sbjct: 10 TLGMGSERRELMRTLGGRLRMLRVEAGLTGAALAQRAGVGQPTVSKVETGRMVPSLDV 67 Score = 38.4 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS 144 +S DW R + +++R +G RL+ +R + G++ + G+ T+S Sbjct: 2 VSADW-------WCRTLGMGSERRELMRTLGGRLRMLRVEAGLTGAALAQRAGVGQPTVS 54 Query: 145 NYEQGRTIPEIKP 157 E GR +P + Sbjct: 55 KVETGRMVPSLDV 67 >gi|329937113|ref|ZP_08286742.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] gi|329303720|gb|EGG47605.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] Length = 207 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + E V +++ +R T + A A+ + ++ E G S+ L L Sbjct: 9 SAETGAALSTVAPQLRALRHHAGLTLESAARAADLSPAHLSRLETGHRQPSLPVLLTLAR 68 Query: 82 EYEISFDWIY 91 Y + + Sbjct: 69 VYGTTVSELL 78 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 +L+++R G++ + + + LS E G P + + +V + + G+ Sbjct: 22 QLRALRHHAGLTLESAARAADLSPAHLSRLETGHRQPSLPVLLTLARVYGTTVSELL-GE 80 Query: 177 EVIVPKSIKRAKGNQSSK 194 ++ RA + ++ Sbjct: 81 TTAARDAVVRADRAEPTR 98 >gi|331672656|ref|ZP_08373445.1| transcriptional activator-regulatory protein [Escherichia coli TA280] gi|331070299|gb|EGI41665.1| transcriptional activator-regulatory protein [Escherichia coli TA280] Length = 251 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R A TQK + ++A+ E G + + + + + N + +W+ Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTK-IVEIANALGVRAEWLS 85 Query: 92 DG 93 G Sbjct: 86 SG 87 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R +G++Q G L+G+ + + E G+ K I +W+ G Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVE-IANALGVRAEWLSSG 87 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + +++ + S K Sbjct: 88 VGNMSDSTVQPIQSTVSHSK 107 >gi|296451497|ref|ZP_06893233.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296880153|ref|ZP_06904120.1| MerR family transcriptional regulator [Clostridium difficile NAP07] gi|296259672|gb|EFH06531.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296428878|gb|EFH14758.1| MerR family transcriptional regulator [Clostridium difficile NAP07] Length = 196 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 KD+G +IK +R T K+M+ N ++ E G+ S + + + ++ Sbjct: 3 LNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + +R + +K + + Sbjct: 63 TYFFMKPKEHKRAVLRSYEKEVFDVENSTFI 93 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K +R K M+ + + + LS E+G T KI V L + + Sbjct: 9 AKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVELTYFF-- 66 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + PK KRA K+ Sbjct: 67 ---MKPKEHKRAVLRSYEKE 83 >gi|270289916|ref|ZP_06196142.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|270281453|gb|EFA27285.1| transcriptional regulator [Pediococcus acidilactici 7_4] Length = 69 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I RK +Q E+A A +N EN S+ A L + + D ++ Sbjct: 5 ITRRRKHLKLSQAEVAQLAGVTRQTINAIENNKYDPSLSLAFELAHILNTTVDQLF 60 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + RK +SQ E +L G+ T++ E + P + A ++ + +D ++ Sbjct: 1 MKNSITRRRKHLKLSQAEVAQLAGVTRQTINAIENNKYDPSLSLAFELAHILNTTVDQLF 60 >gi|229098961|ref|ZP_04229896.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] gi|229105128|ref|ZP_04235779.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28] gi|228678309|gb|EEL32535.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28] gi|228684459|gb|EEL38402.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] Length = 190 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|227536975|ref|ZP_03967024.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300773178|ref|ZP_07083047.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227243171|gb|EEI93186.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300759349|gb|EFK56176.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 69 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R N TQ E+A +N E G S AL + +EIS + +++ E Sbjct: 5 LKVERARRNMTQAELATLVEVSRQTINSIEIGKYVPSTLLALKIAAVFEISIESLFNLEE 64 Query: 96 ID 97 D Sbjct: 65 SD 66 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R + M+Q E L+ + T+++ E G+ +P A KI V + ++ ++ Sbjct: 1 MTNTLKVERARRNMTQAELATLVEVSRQTINSIEIGKYVPSTLLALKIAAVFEISIESLF 60 Query: 174 FGDEV 178 +E Sbjct: 61 NLEES 65 >gi|217977134|ref|YP_002361281.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217502510|gb|ACK49919.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 205 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 31/77 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++ +RKA N + E++ + +S ++ E + ++ L ++S + + Sbjct: 22 QLGKTVQRLRKAYNFSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 81 Query: 91 YDGEVIDRRYEDVTNKK 107 + E + Sbjct: 82 LQAADDEPFLEKTARHE 98 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 ++ +RK S E + G+ S +S E+ T P + ++ Q ++ + Sbjct: 25 KTVQRLRKAYNFSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVLQA 84 Query: 174 FGDEVIVPKSIK 185 DE + K+ + Sbjct: 85 ADDEPFLEKTAR 96 >gi|146308486|ref|YP_001188951.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576687|gb|ABP86219.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 197 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Query: 17 YTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 T I P +R + +G +IK R+A ++A A + ++ EN STS+ Sbjct: 1 MTTEIPPRLR-LEQYLGMQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDTL 59 Query: 77 LYLRNEYEISFDWIYDGEVIDR 98 L + + ++ Sbjct: 60 SRLCDVLGMPMSKLFSQYDQPD 81 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 9/85 (10%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY-- 173 ++K R+ + + + ++ G+ LS E + + ++ V + ++ Sbjct: 17 MQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDTLSRLCDVLGMPMSKLFSQ 76 Query: 174 FGDEVIVPKSIKRAKGNQSSKKSKK 198 + +K +G + ++ + Sbjct: 77 YDQPDGSAILVKAGEGMEVVRRGTE 101 >gi|87119866|ref|ZP_01075762.1| hypothetical protein MED121_01460 [Marinomonas sp. MED121] gi|86164568|gb|EAQ65837.1| hypothetical protein MED121_01460 [Marinomonas sp. MED121] Length = 228 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRY---AL 77 ++ + + G ++K+IRK Q+ +A ++ +E G S S+ + Sbjct: 1 MSTKKAAFKSSFGVKLKEIRKLGGWNQEVLAAQLGISRDTLSRYERGELSPSLEVFGKMM 60 Query: 78 YLRNEYEISFDWIYDGEV 95 + + EI+ + + GE Sbjct: 61 SIFSALEITAEDMLAGEE 78 >gi|47564376|ref|ZP_00235421.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558528|gb|EAL16851.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 69 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 4/63 (6%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF---- 87 + +I R TQ+E+A + E + S+ A + N +E S Sbjct: 5 LHNKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSLTDVF 64 Query: 88 DWI 90 D++ Sbjct: 65 DYL 67 Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R +KG +Q E +G+ T++ E+ + P + A KI V +K L ++ Sbjct: 6 HNKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSLTDVF 64 >gi|313113342|ref|ZP_07798934.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624318|gb|EFQ07681.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 144 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 14/123 (11%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENG--MCSTSIRYALYLRNEYEISFDWIY 91 R++ R + QKE+A E E+G S + A L Y I + I Sbjct: 13 DRLRWCRYGLDLLQKEVAAMVGMEEWLYQDLESGAFHRSFTPELADKLAALYGIPVEDIL 72 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + G L+ R+ KG ++ + + +++ +E G+ Sbjct: 73 ------------DDYTLFFHRGGGVFLREYRQVKGWNRQQLADHAKVSRTSIRCWESGQK 120 Query: 152 IPE 154 Sbjct: 121 TIS 123 Score = 43.0 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 2/70 (2%) Query: 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ--GRTIPEIKPARKIKQ 163 D RL+ R + Q E ++GM + E + A K+ Sbjct: 3 HSYADIPNPWDRLRWCRYGLDLLQKEVAAMVGMEEWLYQDLESGAFHRSFTPELADKLAA 62 Query: 164 VTKKHLDWIY 173 + ++ I Sbjct: 63 LYGIPVEDIL 72 Score = 42.2 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 24/52 (46%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 G +++ R+ ++++A A +++ +E+G + S + +L Sbjct: 84 GVFLREYRQVKGWNRQQLADHAKVSRTSIRCWESGQKTISQKCFCHLVENLG 135 >gi|317127593|ref|YP_004093875.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315472541|gb|ADU29144.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 69 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K++R ++ TQ E+A N + E G + S+ A+ + + + + + I+ Sbjct: 3 IKNRVKELRARHSLTQGELAESVNVTRQTIVALEKGSYTPSLLLAMNISHTFNMPIEEIF 62 Query: 92 DGEVIDR 98 E Sbjct: 63 YLEEEKN 69 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 I R+K +R ++Q E + + + T+ E+G P + A I ++ Sbjct: 1 MTIKNRVKELRARHSLTQGELAESVNVTRQTIVALEKGSYTPSLLLAMNISHTFNMPIEE 60 Query: 172 IYFGDEV 178 I++ +E Sbjct: 61 IFYLEEE 67 >gi|266621408|ref|ZP_06114343.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288866922|gb|EFC99220.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 66 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 I R+K R M Q E +G+ T+ N E+G+ P + A I +V ++ I Sbjct: 1 MIKNRIKEYRARYDMKQEELADRVGVRRETIGNLEKGKYNPSLVLAWNIAKVFGATIEEI 60 Query: 173 YFGDEV 178 + +E Sbjct: 61 FTVEES 66 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RIK+ R + Q+E+A + E G + S+ A + + + + I+ Sbjct: 2 IKNRIKEYRARYDMKQEELADRVGVRRETIGNLEKGKYNPSLVLAWNIAKVFGATIEEIF 61 Query: 92 DGEV 95 E Sbjct: 62 TVEE 65 >gi|237815604|ref|ZP_04594601.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] gi|260754928|ref|ZP_05867276.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260761971|ref|ZP_05874314.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|237788902|gb|EEP63113.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] gi|260672403|gb|EEX59224.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675036|gb|EEX61857.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] Length = 472 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 10 IGRKIREIREQHRATQSGFAERLGISTSYLNQSENNQRPVSAAVLLALAENYQIDIGAIS 69 Query: 92 DGEVID 97 G+ Sbjct: 70 LGDDDR 75 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 8 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQSENNQRPVSAAVLLALAENYQIDIGA 67 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 68 ISLGDDDRLLSAVSEA 83 >gi|229145017|ref|ZP_04273412.1| hypothetical protein bcere0012_21770 [Bacillus cereus BDRD-ST24] gi|296502971|ref|YP_003664671.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|228638466|gb|EEK94901.1| hypothetical protein bcere0012_21770 [Bacillus cereus BDRD-ST24] gi|296324023|gb|ADH06951.1| transcriptional regulator [Bacillus thuringiensis BMB171] Length = 185 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKLIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKLIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|197303466|ref|ZP_03168505.1| hypothetical protein RUMLAC_02188 [Ruminococcus lactaris ATCC 29176] gi|197297464|gb|EDY32025.1| hypothetical protein RUMLAC_02188 [Ruminococcus lactaris ATCC 29176] Length = 68 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D RIK++R+ +Q++ A+ + + E G + SI+ + + +EIS + + Sbjct: 5 DFANRIKELRQQQGLSQEKFALKIDMDRTYYASVEAGKRNVSIKNIKKIADGFEISLEEL 64 Query: 91 YD 92 + Sbjct: 65 FK 66 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+K +R+ +G+SQ +F + M + ++ E G+ IK +KI + L+ ++ Sbjct: 6 FANRIKELRQQQGLSQEKFALKIDMDRTYYASVEAGKRNVSIKNIKKIADGFEISLEELF 65 Query: 174 F 174 Sbjct: 66 K 66 >gi|149921943|ref|ZP_01910386.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817205|gb|EDM76683.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 128 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 7/105 (6%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E G +K +R A TQ+++A A + E+ S S+ L + Sbjct: 9 EGEPDRHRFGKHVKSLRMARGMTQEQLAERAGLSADTIRRLEHAGFSPSLDTLFKLCLGF 68 Query: 84 EISFDWIY-------DGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + E + + D ++ + Sbjct: 69 DLLLSTFFISYELGERDEARELIDIVSGRRDPEDIEMATTMIRLL 113 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D + G +KS+R +GM+Q + + G+ T+ E P + K+ L Sbjct: 13 DRHRFGKHVKSLRMARGMTQEQLAERAGLSADTIRRLEHAGFSPSLDTLFKLCLGFDLLL 72 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + E+ + S ++ +D Sbjct: 73 STFFISYELGERDEARELIDIVSGRRDPED 102 >gi|62290098|ref|YP_221891.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82700021|ref|YP_414595.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189024336|ref|YP_001935104.1| Helix-turn-helix motif [Brucella abortus S19] gi|254689408|ref|ZP_05152662.1| Helix-turn-helix motif [Brucella abortus bv. 6 str. 870] gi|254697542|ref|ZP_05159370.1| Helix-turn-helix motif [Brucella abortus bv. 2 str. 86/8/59] gi|254730437|ref|ZP_05189015.1| Helix-turn-helix motif [Brucella abortus bv. 4 str. 292] gi|256257654|ref|ZP_05463190.1| Helix-turn-helix motif [Brucella abortus bv. 9 str. C68] gi|260546647|ref|ZP_05822386.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260758145|ref|ZP_05870493.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260883939|ref|ZP_05895553.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297248496|ref|ZP_06932214.1| helix-turn-helix domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62196230|gb|AAX74530.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1 str. 9-941] gi|82616122|emb|CAJ11165.1| Helix-turn-helix motif [Brucella melitensis biovar Abortus 2308] gi|189019908|gb|ACD72630.1| Helix-turn-helix motif [Brucella abortus S19] gi|260095697|gb|EEW79574.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260668463|gb|EEX55403.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260873467|gb|EEX80536.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297175665|gb|EFH35012.1| helix-turn-helix domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 470 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +I++IR+ + TQ A S +N EN S L L Y+I I Sbjct: 8 IGRKIREIREQHRATQSGFAERLGISTSYLNQSENNQRPVSAAVLLALAENYQIDIGAIS 67 Query: 92 DGEVID 97 G+ Sbjct: 68 LGDDDR 73 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ IR+ +Q F + LG+ S L+ E + + + + + Sbjct: 6 LYIGRKIREIREQHRATQSGFAERLGISTSYLNQSENNQRPVSAAVLLALAENYQIDIGA 65 Query: 172 IYFGDEVIVPKSIKRA 187 I GD+ + ++ A Sbjct: 66 ISLGDDDRLLSAVSEA 81 >gi|117924665|ref|YP_865282.1| helix-turn-helix domain-containing protein [Magnetococcus sp. MC-1] gi|117608421|gb|ABK43876.1| helix-turn-helix domain protein [Magnetococcus sp. MC-1] Length = 352 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 2/74 (2%) Query: 34 TRIKDIRKANNKTQKEMAIGAN--QLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K RK + +++A + A+ +E G S ++ L +S ++ Sbjct: 4 ERLKLARKREGLSLRDLASRIDGTVSAQAIGKYERGEMMPSSTVSIALSKALGVSVSYLL 63 Query: 92 DGEVIDRRYEDVTN 105 I + Sbjct: 64 SPSDISLEKVEFRK 77 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 RLK RK +G+S + + + + YE+G +P + + + + Sbjct: 1 MFSERLKLARKREGLSLRDLASRIDGTVSAQAIGKYERGEMMPSSTVSIALSKALGVSVS 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKS 196 ++ ++ + K R + +++ Sbjct: 61 YLLSPSDISLEKVEFRKLASTKARER 86 >gi|332976057|gb|EGK12927.1| DNA-binding protein [Desmospora sp. 8437] Length = 184 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 28/82 (34%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +++ IK +R T K ++ S ++ E G S +I + + + Sbjct: 5 FMEEIYQEIKRLRLEQGYTLKVLSERTGLSVSFLSQVERGSSSLAITSLKKIADALGVPI 64 Query: 88 DWIYDGEVIDRRYEDVTNKKRL 109 ++ E +K Sbjct: 65 TRFFEAEFNHNYLLKAEEQKPF 86 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + I +K +R ++G + + G+ S LS E+G + I +KI Sbjct: 4 VFMEEIYQEIKRLRLEQGYTLKVLSERTGLSVSFLSQVERGSSSLAITSLKKIADALGVP 63 Query: 169 LDWIYFGD 176 + + + Sbjct: 64 ITRFFEAE 71 >gi|323352640|ref|ZP_08087610.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121676|gb|EFX93422.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|332362630|gb|EGJ40428.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 69 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R+K++R + Q E+A A ++L E G + SI AL + + + Sbjct: 5 NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFN 55 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK +R G++Q E KL G+ T+S E+G P I A KI + ++++ Sbjct: 1 MKLRNRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVEN 60 Query: 172 IY 173 ++ Sbjct: 61 VF 62 >gi|320107125|ref|YP_004182715.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319925646|gb|ADV82721.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 112 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVID 97 +RK + TQ ++A + + +E G ++ L +S D + + Sbjct: 9 RLRKERSLTQPQLAEKIGLHVAQIRRYEAGTSQPTLDVIRSLAVALGVSADELLFAKNER 68 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 34/82 (41%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +RK++ ++Q + + +G+ + + YE G + P + R + D + F Sbjct: 9 RLRKERSLTQPQLAEKIGLHVAQIRRYEAGTSQPTLDVIRSLAVALGVSADELLFAKNER 68 Query: 180 VPKSIKRAKGNQSSKKSKKDKK 201 P + + SK + KK Sbjct: 69 GPDDDLKLQFEAVSKFDPECKK 90 >gi|303326709|ref|ZP_07357151.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] gi|302862697|gb|EFL85629.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] Length = 108 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+++R + +Q++++ + ++ E G + S + L +S + Sbjct: 9 LGKRIRELRVKHGLSQEKLSELSGISSRHISEMERGESNPSFQVMEQLTFALGVSMKEFF 68 Query: 92 DGE 94 D E Sbjct: 69 DFE 71 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 32/71 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R G+SQ + +L G+ + +S E+G + P + ++ + + Sbjct: 11 KRIRELRVKHGLSQEKLSELSGISSRHISEMERGESNPSFQVMEQLTFALGVSMKEFFDF 70 Query: 176 DEVIVPKSIKR 186 + ++I+ Sbjct: 71 EHHADDEAIRD 81 >gi|302337126|ref|YP_003802332.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634311|gb|ADK79738.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 132 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ RKA +Q + + +ENG S S + + D + Sbjct: 8 IGRNIRSYRKACGLSQASLGEKVGVSYQQIQKYENGASSISAFQLGRIAEILAVPIDCFF 67 Query: 92 DGEVID 97 + Sbjct: 68 HLDTES 73 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D IG ++S RK G+SQ G+ +G+ + YE G + +I ++ + Sbjct: 4 DKSTIGRNIRSYRKACGLSQASLGEKVGVSYQQIQKYENGASSISAFQLGRIAEILAVPI 63 Query: 170 DWIYFGDEV---IVPKSIKRAKGNQSSKKSKKDKK 201 D + D P + G++ + S+ ++K Sbjct: 64 DCFFHLDTESGAEAPPAYSSEIGDEFLRVSQDERK 98 >gi|300765038|ref|ZP_07075026.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] gi|300514338|gb|EFK41397.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] Length = 105 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 4/94 (4%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 I ++R+ N +Q+E+A +S +N E+G + N +++S D++ E Sbjct: 10 IINLREKRNISQRELANRIGINKSVMNRIESGERDIRAHELEAIANYFDVSADYLLGREE 69 Query: 96 IDRRYE----DVTNKKRLDPYAIGARLKSIRKDK 125 D + + I LK IR K Sbjct: 70 FDNSDLLAAHIDDDLTEDERIEIEKYLKFIRSQK 103 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + + ++R+ + +SQ E +G+ S ++ E G I Sbjct: 1 MVNMKVNEMIINLREKRNISQRELANRIGINKSVMNRIESGERDIRAHELEAIANYFDVS 60 Query: 169 LDWIYFGDE 177 D++ +E Sbjct: 61 ADYLLGREE 69 >gi|157370727|ref|YP_001478716.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157322491|gb|ABV41588.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 189 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I+ R+ + E+A A +S ++ E G + S+ L ++ + Sbjct: 19 IRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLWALAMALDVPVSRLI 74 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R+ G+S E + G+ STLS E G P ++ + + + Sbjct: 19 IRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLWALAMALDVPVSRLI 74 >gi|134300420|ref|YP_001113916.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053120|gb|ABO51091.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 71 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 36 IKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I++ R TQ ++A S ++ E G+ S+ AL + ++ D ++ Sbjct: 5 IREARTNRLFKITQNDLAKAVGIHPSQMSQIERGVYKPSLTLALKISKVLKVPLDDLFKL 64 Query: 94 EVID 97 E D Sbjct: 65 EPED 68 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 114 IGARLKSIRKDK--GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++ R ++ ++Q + K +G+ S +S E+G P + A KI +V K LD Sbjct: 1 MKNYIREARTNRLFKITQNDLAKAVGIHPSQMSQIERGVYKPSLTLALKISKVLKVPLDD 60 Query: 172 IYFGDEVIVPK 182 ++ + K Sbjct: 61 LFKLEPEDWKK 71 >gi|84496251|ref|ZP_00995105.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp. HTCC2649] gi|84383019|gb|EAP98900.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp. HTCC2649] Length = 511 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 Y +GT I+D R+ TQ E+A +SAV E G + S+ + Sbjct: 3 ESSYLTRIGTLIRDARRHQGLTQNELADKLGTSQSAVARIEQGRQNLSLEMLARVGETLG 62 Query: 85 ---ISF 87 +S Sbjct: 63 SEFVSL 68 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ R+ +G++Q E LG S ++ EQGR ++ ++ + Sbjct: 14 IRDARRHQGLTQNELADKLGTSQSAVARIEQGRQNLSLEMLARVGETLG 62 >gi|326802770|ref|YP_004320588.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651230|gb|AEA01413.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 194 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + R+K R+A T + ++ + S V +E G + L Y +S Sbjct: 1 MPTLANRLKSAREAAGLTIEAVSEKIGKSVSTVWRYEQGKSEVNQESLTKLAELYGVSEL 60 Query: 89 WI 90 ++ Sbjct: 61 YL 62 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLKS R+ G++ + +G ST+ YEQG++ + K+ ++ ++ Sbjct: 6 NRLKSAREAAGLTIEAVSEKIGKSVSTVWRYEQGKSEVNQESLTKLAELYGVSELYLRGF 65 Query: 176 DEVIVPKSIK 185 ++ I+ Sbjct: 66 SDMKSADVIE 75 >gi|311279701|ref|YP_003941932.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748896|gb|ADO48648.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 180 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 8/90 (8%), Positives = 27/90 (30%), Gaps = 1/90 (1%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K +R+ + +A ++ + E S ++ + + F ++ Sbjct: 11 LKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFS-LFITPP 69 Query: 96 IDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 ++ + + +R D Sbjct: 70 ESEAAAYDPQQQAMVVTPLFPWDAELRFDH 99 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 LK++R+ +G S + G+ + L E+ + P + KI E Sbjct: 11 LKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSLFITPPE 70 Query: 178 V 178 Sbjct: 71 S 71 >gi|240851129|ref|YP_002972531.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268252|gb|ACS51840.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 2/103 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RI+ R A +QK + + +E G S+ L + + E+ + Y Sbjct: 13 IGKRIRQRRIAMELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQKLEVPMSFFY 72 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGAR--LKSIRKDKGMSQIEF 132 + + Y+ + LK+ R+ K Q Sbjct: 73 ADLATKENLSTNASHCEQETYSEKEQALLKNFRELKTKKQKAI 115 Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 N +D IG R++ R +SQ G LG+ + YE+G + K Sbjct: 1 MQTKNPNFIDIL-IGKRIRQRRIAMELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLK 59 Query: 161 IKQVTKKHLDWIY 173 I Q + + + Y Sbjct: 60 IAQKLEVPMSFFY 72 >gi|229051388|ref|ZP_04194893.1| Prophage LambdaBa02, repressor protein [Bacillus cereus AH676] gi|228721957|gb|EEL73397.1| Prophage LambdaBa02, repressor protein [Bacillus cereus AH676] Length = 112 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+K +RK+ TQ E+ ++ ++L EN S R + D++ Sbjct: 3 GDRVKQLRKSKGWTQGELGDAVGLKKATISLIENNKRDRSERSVSVFAEVLGCTSDYLLG 62 Query: 93 GEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 + + ++ + + I L+ + Sbjct: 63 FSDDPQLNGEQHSRLKQEFNEIYEMLQKM 91 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G R+K +RK KG +Q E G +G+ +T+S E + + +V D++ Sbjct: 1 MRGDRVKQLRKSKGWTQGELGDAVGLKKATISLIENNKRDRSERSVSVFAEVLGCTSDYL 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKK 195 + + ++ Q + Sbjct: 61 LGFSDDPQLNGEQHSRLKQEFNE 83 >gi|256830616|ref|YP_003159344.1| helix-turn-helix domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579792|gb|ACU90928.1| helix-turn-helix domain protein [Desulfomicrobium baculatum DSM 4028] Length = 355 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 41/83 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG RL+ RK +S + +G+ ++ ++ +E+ + +P+ K K+ +V ++ Sbjct: 1 MIGERLQRARKAADLSLRNLAEQVGVSHTWINKFEKDQAMPDSKTLLKLGKVLGVRSEYF 60 Query: 173 YFGDEVIVPKSIKRAKGNQSSKK 195 + ++V + + R K K+ Sbjct: 61 FRPEQVTLSQVEYRKKSTLPKKR 83 Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 2/103 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ RKA + + + +A + +N FE + L L + ++ + Sbjct: 2 IGERLQRARKAADLSLRNLAEQVGVSHTWINKFEKDQAMPDSKTLLKLGKVLGVRSEYFF 61 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSI--RKDKGMSQIEF 132 E + + K L + A I ++ M + Sbjct: 62 RPEQVTLSQVEYRKKSTLPKKRLQAITHEILDHIERRMELEDL 104 >gi|262194363|ref|YP_003265572.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077710|gb|ACY13679.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 79 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%) Query: 26 RQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 R+ +G ++D RKA TQ++ A + E G+ S+ L + + Sbjct: 3 RELATTIGNAVRDGRKAFGLTQEQAAERLDISADYYGRVERGVAIPSVSMLRRLAVAFGL 62 Query: 86 SFDWIY 91 + + Sbjct: 63 DGNVLL 68 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ RK G++Q + + L + E+G IP + R++ + + Sbjct: 11 NAVRDGRKAFGLTQEQAAERLDISADYYGRVERGVAIPSVSMLRRLAVAFGLDGNVLL 68 >gi|281355057|ref|ZP_06241551.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281317937|gb|EFB01957.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 73 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 23/44 (52%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTS 72 +++ ++K +R+ +Q+++A S VN +ENG S Sbjct: 4 MENIAEQLKALRRQRGWSQEDLARELGVSFSTVNRWENGKAKPS 47 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQ 163 I +LK++R+ +G SQ + + LG+ ST++ +E G+ P ++ Q Sbjct: 4 MENIAEQLKALRRQRGWSQEDLARELGVSFSTVNRWENGKAKPS-----RLAQ 51 >gi|153954624|ref|YP_001395389.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347482|gb|EDK34018.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 80 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 VG I++IR N TQ+E+A +S ++ +ENG+ I + E+ + Sbjct: 2 KVGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKL 61 Query: 91 YDGEVIDRRY 100 + E + + Sbjct: 62 LELEETEIKK 71 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G +++IR K ++Q E ++ G+ S +S YE G IP I I + + + Sbjct: 1 MKVGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISK 60 Query: 172 IYFGDEVIVPKSIKRAKG 189 + +E + K A Sbjct: 61 LLELEETEIKKGSSIANS 78 >gi|148557504|ref|YP_001265086.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502694|gb|ABQ70948.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 252 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 4/104 (3%) Query: 10 SLKSLQEYTLIITPEIRQYWK----DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE 65 S + + L I+PE G ++ R + +E+A S ++ E Sbjct: 13 SASTSDDQALGISPETMAKTPRNTSQPGPALRAARLDKGLSLRELAARTGLPFSTLSKLE 72 Query: 66 NGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRL 109 NG + + L + ++ D ++ + Sbjct: 73 NGKMGMTYDRLVLLAQALGVEIGKLFSTAAPDEPARGAVGRRSI 116 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L++ R DKG+S E G+P STLS E G+ + Q + ++ Sbjct: 43 LRAARLDKGLSLRELAARTGLPFSTLSKLENGKMGMTYDRLVLLAQALGVEIGKLF 98 >gi|91789185|ref|YP_550137.1| transcriptional regulator [Polaromonas sp. JS666] gi|91698410|gb|ABE45239.1| transcriptional regulator, XRE family with cupin sensor domain [Polaromonas sp. JS666] Length = 201 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 31/78 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R++ R T ++A + ES ++ E+G S S+ + + + + Sbjct: 26 LGVRLRHARLVAGLTMTQVAQKSQCSESLISKIESGQASPSLAMLHRIAVTLDTNIAALT 85 Query: 92 DGEVIDRRYEDVTNKKRL 109 E ++ ++ + Sbjct: 86 TEEAPREGPIRLSGERPV 103 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 1/77 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ R G++ + + S +S E G+ P + +I ++ + +E Sbjct: 30 LRHARLVAGLTMTQVAQKSQCSESLISKIESGQASPSLAMLHRIAVTLDTNIAAL-TTEE 88 Query: 178 VIVPKSIKRAKGNQSSK 194 I+ + K Sbjct: 89 APREGPIRLSGERPVIK 105 >gi|330828143|ref|YP_004391095.1| DNA-binding protein [Aeromonas veronii B565] gi|328803279|gb|AEB48478.1| DNA-binding protein [Aeromonas veronii B565] Length = 189 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 27/68 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ + + R+K +R + A + ++ + E G S ++ + + Sbjct: 1 MQEMSQHLAARLKGLRSERGWSLDATARETSVSKAMLGQIERGESSPTVATLWKIATGFR 60 Query: 85 ISFDWIYD 92 +SF + Sbjct: 61 VSFSSFIE 68 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ARLK +R ++G S + + + L E+G + P + KI + Sbjct: 10 ARLKGLRSERGWSLDATARETSVSKAMLGQIERGESSPTVATLWKIATGFRVSFSSFI 67 >gi|328958840|ref|YP_004373751.1| hypothetical protein CAR_50p370 [Carnobacterium sp. 17-4] gi|328675164|gb|AEB31209.1| hypothetical protein CAR_50p370 [Carnobacterium sp. 17-4] Length = 156 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 D+ ++K R N TQ+++A ++ +E G + L N + +S Sbjct: 2 DISNKLKLKRTELNLTQQQVADKVFVTRQTISKWELGKSQPDLISLKLLDNLFNLS 57 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 I +LK R + ++Q + + + T+S +E G++ P++ + + + Sbjct: 1 MDISNKLKLKRTELNLTQQQVADKVFVTRQTISKWELGKSQPDLISLKLLDNLFNLS 57 >gi|322384169|ref|ZP_08057879.1| transcriptional repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151061|gb|EFX44378.1| transcriptional repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 139 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENG-MCSTSIRYALYLRNEYEISFDWIYD 92 +++D+RK T +E++ + + ++ ENG S + L IS++ + + Sbjct: 5 DKLRDLRKLKGYTIRELSDRSGVSTAYISQLENGNRGIPSPEVLMKLSEGLNISYEELME 64 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLD 170 +L+ +RK KG + E G+ + +S E R IP + K+ + + Sbjct: 1 MYFYDKLRDLRKLKGYTIRELSDRSGVSTAYISQLENGNRGIPSPEVLMKLSEGLNISYE 60 Query: 171 WIY 173 + Sbjct: 61 ELM 63 >gi|299537817|ref|ZP_07051106.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298726796|gb|EFI67382.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 184 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 10/85 (11%), Positives = 30/85 (35%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + +K IR+ + ++++ + ++ + E G S ++ + N Sbjct: 1 MEEIHLVFARNLKAIREREKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLR 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + + L Sbjct: 61 VSFTELMHPPQPETEVIRSKEIQVL 85 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 LK+IR+ + +S + +L G+ + + E+G + P + KI + Sbjct: 5 HLVFARNLKAIREREKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLRVSFT 64 Query: 171 WIYF----GDEVIVPKSIKRAKGNQ 191 + EVI K I+ K + Sbjct: 65 ELMHPPQPETEVIRSKEIQVLKEDH 89 >gi|262282768|ref|ZP_06060536.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262262059|gb|EEY80757.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 225 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N TQ + + +ENG+ + L ++ ++ D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 94 EV--IDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + +KK +D +A L+ RK Sbjct: 65 TSALYTYPLLTLPHKKEVDQFASR-LLERQRK 95 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R + ++Q + LG+ T S +E G P K R++ K ++ Sbjct: 1 MFSHEKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENY 60 Query: 172 IY 173 Sbjct: 61 FV 62 >gi|256422517|ref|YP_003123170.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037425|gb|ACU60969.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 97 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 31/84 (36%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G I+ +R N TQKE+A ++ ++ E G+ S + N S +I Sbjct: 2 NIGKAIQTLRTKKNITQKELAEKIGITQTGLSYIETGVKHPSENSLEKIANALGSSVAFI 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAI 114 + + + D Sbjct: 62 KLASLDLDKDVPQDKRAEFDELFP 85 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++++R K ++Q E + +G+ + LS E G P KI + + Sbjct: 1 MNIGKAIQTLRTKKNITQKELAEKIGITQTGLSYIETGVKHPSENSLEKIANALGSSVAF 60 Query: 172 I 172 I Sbjct: 61 I 61 >gi|229100244|ref|ZP_04231136.1| hypothetical protein bcere0020_54410 [Bacillus cereus Rock3-29] gi|229115912|ref|ZP_04245309.1| hypothetical protein bcere0017_22030 [Bacillus cereus Rock1-3] gi|228667574|gb|EEL23019.1| hypothetical protein bcere0017_22030 [Bacillus cereus Rock1-3] gi|228683176|gb|EEL37162.1| hypothetical protein bcere0020_54410 [Bacillus cereus Rock3-29] Length = 185 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDIKVVLRDDVQVL 85 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + + ++ Sbjct: 70 PQPDIKVVLRD 80 >gi|239815201|ref|YP_002944111.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801778|gb|ACS18845.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 195 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 5/146 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ +R+A + E+A + ++ ++ E S + L + + Sbjct: 18 IAARLLALRQAKALSLAELAELSGVSKAMISKVERAESSPTAVLLGRLAAGLGVPLAQLL 77 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E R ++ + L+ ++G S + +P S Y + Sbjct: 78 TEEKASPRRLRPRAEQEVWRDPEAGYLRRQVAERGASGGVEMVEIELPRSAQVAYPRWSG 137 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGDE 177 P + ++ + +G+E Sbjct: 138 KPYRQCLWMLEGALRVD-----YGEE 158 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 2/96 (2%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 +D L ++R+ K +S E +L G+ + +S E+ + P Sbjct: 2 RNNSSPPAEPSGIDSLIAARLL-ALRQAKALSLAELAELSGVSKAMISKVERAESSPTAV 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQS 192 ++ L + +E P+ ++ + Sbjct: 61 LLGRLAAGLGVPLAQLLT-EEKASPRRLRPRAEQEV 95 >gi|167645955|ref|YP_001683618.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348385|gb|ABZ71120.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 74 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG I+ +R+A Q E+A A + ++ ENG + S+R L ++ + Sbjct: 7 VGANIRALREARGVPQDELAHIAEIHTTYLSGIENGKRNISLRVLERLAAALAVTEAELV 66 Query: 92 DGEVI 96 + Sbjct: 67 RRKDQ 71 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 26/62 (41%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A ++++R+ +G+ Q E + + + LS E G+ ++ ++ + Sbjct: 9 ANIRALREARGVPQDELAHIAEIHTTYLSGIENGKRNISLRVLERLAAALAVTEAELVRR 68 Query: 176 DE 177 + Sbjct: 69 KD 70 >gi|53721509|ref|YP_110494.1| MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126443308|ref|YP_001061732.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 668] gi|126457392|ref|YP_001074677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1106a] gi|134282910|ref|ZP_01769612.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 305] gi|167921777|ref|ZP_02508868.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei BCC215] gi|226196538|ref|ZP_03792119.1| transcriptional regulator PuuR [Burkholderia pseudomallei Pakistan 9] gi|237509401|ref|ZP_04522116.1| transcriptional regulator PuuR [Burkholderia pseudomallei MSHR346] gi|242312333|ref|ZP_04811350.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b] gi|254198938|ref|ZP_04905356.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei S13] gi|254265312|ref|ZP_04956177.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710a] gi|254296722|ref|ZP_04964176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 406e] gi|52211923|emb|CAH37928.1| putative MerR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126222799|gb|ABN86304.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 668] gi|126231160|gb|ABN94573.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106a] gi|134245558|gb|EBA45650.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 305] gi|157806591|gb|EDO83761.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 406e] gi|169657110|gb|EDS88504.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei S13] gi|225931414|gb|EEH27420.1| transcriptional regulator PuuR [Burkholderia pseudomallei Pakistan 9] gi|235001606|gb|EEP51030.1| transcriptional regulator PuuR [Burkholderia pseudomallei MSHR346] gi|242135572|gb|EES21975.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b] gi|254216314|gb|EET05699.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710a] Length = 183 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +V TR++ +R +Q+E+A A ++L E S S+ L +S Sbjct: 4 EVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEF 63 Query: 91 YDGEVIDRR 99 + E+ + R Sbjct: 64 FTFEIDENR 72 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ +R G+SQ E K G+ N T+S EQ R P + +K+ + L + E Sbjct: 9 LRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFFTF-E 67 Query: 178 VIVPKSIKRAKGNQSS 193 + +S+ +G + Sbjct: 68 IDENRSVVSRRGEMPN 83 >gi|49479309|ref|YP_036566.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330865|gb|AAT61511.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 185 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVILRNDIQVL 85 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLI 67 >gi|49478671|ref|YP_038556.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140999|ref|YP_085831.1| DNA-binding protein [Bacillus cereus E33L] gi|229093600|ref|ZP_04224701.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] gi|49330227|gb|AAT60873.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974468|gb|AAU16018.1| DNA-binding protein [Bacillus cereus E33L] gi|228689809|gb|EEL43615.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] Length = 190 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|15964050|ref|NP_384403.1| hypothetical protein SMc00377 [Sinorhizobium meliloti 1021] gi|15073226|emb|CAC41734.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 263 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + G+R+K+ R +Q ++A+ A ++ E G + S L L + ++ Sbjct: 2 EFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSTPSEGMILRLASVLDVP 57 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 G+RLK R + MSQ++ G+ LS E GR+ P ++ V Sbjct: 1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSTPSEGMILRLASVLDVP 57 >gi|329770320|ref|ZP_08261704.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325] gi|328836744|gb|EGF86398.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325] Length = 181 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+K +R N TQ+E+ + + ++ E + S S+ + + + Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 Query: 92 DGEVIDRRYEDVTNKK 107 D E ++ + Sbjct: 64 DKESSSQKVYYSLEDQ 79 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 Y+IG RLK +R K ++Q E G+ + +S E+ P ++ I QV Sbjct: 1 MYSIGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPK 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + D+ + + + +Q+S + D Sbjct: 61 DFF--DKESSSQKVYYSLEDQTSYEETDD 87 >gi|319938782|ref|ZP_08013146.1| XRE family transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811832|gb|EFW08098.1| XRE family transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 91 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK +R G++Q E K G+ T+S E+G P + A KI + ++++ Sbjct: 1 MKLENRLKELRARDGLNQTELAKKAGVSRQTVSLIERGEYAPSVIIALKIAHIFGENVEN 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSS 193 +++ E K + + S Sbjct: 61 VFYLKENSDEKMDENYRFTSSE 82 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q E+A A V+L E G + S+ AL + + + + + ++ Sbjct: 5 NRLKELRARDGLNQTELAKKAGVSRQTVSLIERGEYAPSVIIALKIAHIFGENVENVFYL 64 Query: 94 EVIDRRYEDVT 104 + D Sbjct: 65 KENSDEKMDEN 75 >gi|307299363|ref|ZP_07579164.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915159|gb|EFN45545.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] Length = 183 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 34/78 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G +++ +R+A + K++A + S ++ E+G S S+ + N + + Sbjct: 6 NIGNKLRSLRQARKISIKKLADTSGVSSSLISQIEHGKVSPSLNTLKKILNAMGETVISL 65 Query: 91 YDGEVIDRRYEDVTNKKR 108 + + + ++ Sbjct: 66 VQQNSSENTMKGLIKRED 83 Score = 44.6 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +L+S+R+ + +S + G+ +S +S E G+ P + +KI + + Sbjct: 9 NKLRSLRQARKISIKKLADTSGVSSSLISQIEHGKVSPSLNTLKKILNAMGETV 62 >gi|229087647|ref|ZP_04219776.1| hypothetical protein bcere0022_42100 [Bacillus cereus Rock3-44] gi|228695688|gb|EEL48544.1| hypothetical protein bcere0022_42100 [Bacillus cereus Rock3-44] Length = 65 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 RIK++RK NN TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NRIKELRKQNNITQIEMAKAMQVTRQTIVAIENHRYNPSLELSLKIAKYFGMKVEDIFIL 64 Query: 94 E 94 E Sbjct: 65 E 65 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R+K +RK ++QIE K + + T+ E R P ++ + KI + ++ Sbjct: 1 MGVKNRIKELRKQNNITQIEMAKAMQVTRQTIVAIENHRYNPSLELSLKIAKYFGMKVED 60 Query: 172 IY 173 I+ Sbjct: 61 IF 62 >gi|284992987|ref|YP_003411541.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066232|gb|ADB77170.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 170 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%) Query: 2 FLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAV 61 + ++ S+ E ++ VG I++ R A + +E+A A + Sbjct: 14 TVRGVVDQLAGSVAETVAAERSKVSATGSQVGEFIREQRSAARVSLRELARTAGVSNPYL 73 Query: 62 NLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 + E G+ S + +IS + +Y+ Sbjct: 74 SQVERGLRKPSAEILAAIAKGLKISAETLYE 104 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R +S E + G+ N LS E+G P + I + K + +Y Sbjct: 46 EFIREQRSAARVSLRELARTAGVSNPYLSQVERGLRKPSAEILAAIAKGLKISAETLY 103 >gi|255654655|ref|ZP_05400064.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296449430|ref|ZP_06891211.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296880634|ref|ZP_06904589.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|296261776|gb|EFH08590.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296428347|gb|EFH14239.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 72 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +IK R+ N TQ E+A + ENG + S++ A+ + ++ + + +++ Sbjct: 8 KIKSYREKNLMTQGELAKSVGVRRETIVHLENGRYNPSLKLAMDIAKVFDTTVEELFE 65 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS R+ M+Q E K +G+ T+ + E GR P +K A I +V ++ ++ E Sbjct: 9 IKSYREKNLMTQGELAKSVGVRRETIVHLENGRYNPSLKLAMDIAKVFDTTVEELFEFIE 68 Query: 178 V 178 Sbjct: 69 E 69 >gi|223983720|ref|ZP_03633892.1| hypothetical protein HOLDEFILI_01173 [Holdemania filiformis DSM 12042] gi|223964312|gb|EEF68652.1| hypothetical protein HOLDEFILI_01173 [Holdemania filiformis DSM 12042] Length = 119 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 38/98 (38%) Query: 102 DVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 R D A G +K+ RK KG+S+ + + + +++ E P ++ ++ Sbjct: 1 MKREVARFDFKAFGQAIKAARKAKGISRNQLADKMNIAPRYIASIENSGQHPSLQIFYEL 60 Query: 162 KQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 + +D +F D+ + +R KD Sbjct: 61 VTLLDVSVDQFFFPDKETDKSTQRRQLETLLDSMDNKD 98 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +K G IK RKA ++ ++A N + EN S++ L ++S D Sbjct: 10 FKAFGQAIKAARKAKGISRNQLADKMNIAPRYIASIENSGQHPSLQIFYELVTLLDVSVD 69 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + + + L L Sbjct: 70 QFFFPDKETDKSTQRRQLETLLDSMDNKDL 99 >gi|168177751|ref|ZP_02612415.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum NCTC 2916] gi|168181271|ref|ZP_02615935.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum Bf] gi|226947637|ref|YP_002802728.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium botulinum A2 str. Kyoto] gi|237793726|ref|YP_002861278.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182671545|gb|EDT83519.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum NCTC 2916] gi|182675370|gb|EDT87331.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum Bf] gi|226840984|gb|ACO83650.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A2 str. Kyoto] gi|229261791|gb|ACQ52824.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum Ba4 str. 657] Length = 434 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A G ++L E+G + S+ YL S ++ Sbjct: 6 LGEKIKRRRKELNMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEDT 69 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K RK+ M+ + + +S E G++ P + + + Sbjct: 1 MEILSLGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAETLNTS 59 Query: 169 LDWIYFGDEVIVPKSIK 185 +++ ++ K K Sbjct: 60 IEYFMESEDTQAEKICK 76 >gi|196044906|ref|ZP_03112140.1| DNA-binding protein [Bacillus cereus 03BB108] gi|229032148|ref|ZP_04188124.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] gi|229186737|ref|ZP_04313895.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] gi|196024394|gb|EDX63067.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228596750|gb|EEK54412.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] gi|228729154|gb|EEL80154.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] Length = 190 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDAGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|192291255|ref|YP_001991860.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192285004|gb|ACF01385.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 207 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L+ +R +G S K G+ + L E G+++P I K+ + Sbjct: 28 HNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPFARLIAT 87 Query: 176 DEVIVPKSIKRAK 188 + P+ ++R Sbjct: 88 ETPHHPQVLRRTD 100 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 22/65 (33%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG ++ +R + + +A + + + E G +I + + F + Sbjct: 26 VGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPFARLI 85 Query: 92 DGEVI 96 E Sbjct: 86 ATETP 90 >gi|163932156|ref|YP_001642346.1| cl repressor [Lactobacillus johnsonii prophage Lj771] gi|163562110|gb|ABY26966.1| cl repressor [Lactobacillus johnsonii prophage Lj771] Length = 118 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 24/63 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 D ++K +R+ ++ +A S +E G+ I + Y++S Sbjct: 1 MTDFSNKLKQLREGKGWSKTNVAKHLGVRLSTYANWEYGISEPDIETINQIATLYDVSNG 60 Query: 89 WIY 91 ++ Sbjct: 61 YLM 63 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +LK +R+ KG S+ K LG+ ST +N+E G + P+I+ +I + Sbjct: 1 MTDFSNKLKQLREGKGWSKTNVAKHLGVRLSTYANWEYGISEPDIETINQIATLYDVSNG 60 Query: 171 WIY 173 ++ Sbjct: 61 YLM 63 >gi|149187584|ref|ZP_01865881.1| predicted transcriptional regulator [Vibrio shilonii AK1] gi|148838464|gb|EDL55404.1| predicted transcriptional regulator [Vibrio shilonii AK1] Length = 206 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RIKDIR T +E + S ++ EN S + + L I + Sbjct: 26 KLGERIKDIRAKLGLTLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLHIDMPQL 85 Query: 91 YD 92 ++ Sbjct: 86 FE 87 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 6/112 (5%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 + + ++P +G R+K IR G++ E + G+ STLS E + P Sbjct: 7 DEYPSLTLAKEGDENIEPLKLGERIKDIRAKLGLTLEEASQRTGLARSTLSKIENEQISP 66 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 + +K+ + ++ P K A G + + + K P Sbjct: 67 TFQAMQKLALGLHIDMPQLF------EPPKKKVATGRRDFTRRGEGKPHPTP 112 >gi|148378407|ref|YP_001252948.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A str. ATCC 3502] gi|153932397|ref|YP_001382785.1| TPR repeat-containing DNA binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936558|ref|YP_001386336.1| TPR repeat-containing DNA binding protein [Clostridium botulinum A str. Hall] gi|148287891|emb|CAL81957.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928441|gb|ABS33941.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A str. ATCC 19397] gi|152932472|gb|ABS37971.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A str. Hall] Length = 434 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A G ++L E+G + S+ YL S ++ Sbjct: 6 LGEKIKRRRKELNMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEDT 69 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K RK+ M+ + + +S E G++ P + + + Sbjct: 1 MEILSLGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAETLNTS 59 Query: 169 LDWIYFGDEVIVPKSIK 185 +++ ++ K K Sbjct: 60 IEYFMESEDTQAEKICK 76 >gi|144897919|emb|CAM74783.1| Helix-turn-helix motif [Magnetospirillum gryphiswaldense MSR-1] Length = 85 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + G ++ IR TQ+E+A A ++ E G + S+ L I+ Sbjct: 4 RQKFGLLLRKIRIEKAMTQEELAHQAGMSVPYLSDIERGRSAPSLVVLADLATALGITMA 63 Query: 89 WIYDGEVIDRRYEDVTNKKRLD 110 ++ I D K+ D Sbjct: 64 DMFRDFEITELDRDGGRKRPRD 85 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ IR +K M+Q E GM LS+ E+GR+ P + + + ++ E Sbjct: 11 LRKIRIEKAMTQEELAHQAGMSVPYLSDIERGRSAPSLVVLADLATALGITMADMFRDFE 70 Query: 178 VIV 180 + Sbjct: 71 ITE 73 >gi|138893751|ref|YP_001124204.1| Xre family transcriptional regulator [Geobacillus thermodenitrificans NG80-2] gi|196250794|ref|ZP_03149481.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134265264|gb|ABO65459.1| Transcriptional regulator Xre family [Geobacillus thermodenitrificans NG80-2] gi|196209744|gb|EDY04516.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 73 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ +A S + E G S + IS + + Sbjct: 7 GRRIRAFRKLKGYTQERLAKELGVSVSILGEIERGNRMPSDSLVEQIAELLNISVEELTP 66 Query: 93 GEVIDRR 99 ++ + Sbjct: 67 PKIESNQ 73 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+++ RK KG +Q K LG+ S L E+G +P +I ++ ++ + Sbjct: 8 RRIRAFRKLKGYTQERLAKELGVSVSILGEIERGNRMPSDSLVEQIAELLNISVEEL 64 >gi|148554493|ref|YP_001262075.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499683|gb|ABQ67937.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 57 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 24/57 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 ++ +R+ +Q+ A A + ++ E G + +++ L + + + D Sbjct: 1 MRRLREEKGWSQEAYADEAGIHRTYISDIERGARNPTVKVVEKLAAPFGVPAGQLID 57 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R++KG SQ + G+ + +S+ E+G P +K K+ + Sbjct: 1 MRRLREEKGWSQEAYADEAGIHRTYISDIERGARNPTVKVVEKLAAPFGVPAGQLI 56 >gi|30262447|ref|NP_844824.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527739|ref|YP_019088.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49185288|ref|YP_028540.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|165868486|ref|ZP_02213146.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631841|ref|ZP_02390168.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641366|ref|ZP_02399617.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170687094|ref|ZP_02878313.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170704501|ref|ZP_02894967.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649164|ref|ZP_02932166.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565652|ref|ZP_03018572.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033739|ref|ZP_03101150.1| DNA-binding protein [Bacillus cereus W] gi|196039938|ref|ZP_03107241.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196043346|ref|ZP_03110584.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218903579|ref|YP_002451413.1| DNA-binding protein [Bacillus cereus AH820] gi|225864404|ref|YP_002749782.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227814743|ref|YP_002814752.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228927494|ref|ZP_04090549.1| hypothetical protein bthur0010_22050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936937|ref|ZP_04099680.1| hypothetical protein bthur0009_53450 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229091415|ref|ZP_04222628.1| hypothetical protein bcere0021_22260 [Bacillus cereus Rock3-42] gi|229121988|ref|ZP_04251206.1| hypothetical protein bcere0016_22860 [Bacillus cereus 95/8201] gi|229184650|ref|ZP_04311851.1| hypothetical protein bcere0004_22110 [Bacillus cereus BGSC 6E1] gi|229600709|ref|YP_002866774.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685025|ref|ZP_05148885.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254722431|ref|ZP_05184219.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254737473|ref|ZP_05195176.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743343|ref|ZP_05201028.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751788|ref|ZP_05203825.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254760306|ref|ZP_05212330.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257078|gb|AAP26310.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502887|gb|AAT31563.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179215|gb|AAT54591.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164715212|gb|EDR20729.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510643|gb|EDR86038.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532139|gb|EDR94775.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130302|gb|EDS99163.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669145|gb|EDT19889.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084238|gb|EDT69296.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190563679|gb|EDV17644.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195993419|gb|EDX57376.1| DNA-binding protein [Bacillus cereus W] gi|196025655|gb|EDX64324.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196029197|gb|EDX67801.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218535334|gb|ACK87732.1| DNA-binding protein [Bacillus cereus AH820] gi|225787891|gb|ACO28108.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227002907|gb|ACP12650.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228598863|gb|EEK56482.1| hypothetical protein bcere0004_22110 [Bacillus cereus BGSC 6E1] gi|228661516|gb|EEL17138.1| hypothetical protein bcere0016_22860 [Bacillus cereus 95/8201] gi|228691926|gb|EEL45670.1| hypothetical protein bcere0021_22260 [Bacillus cereus Rock3-42] gi|228822716|gb|EEM68605.1| hypothetical protein bthur0009_53450 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832213|gb|EEM77795.1| hypothetical protein bthur0010_22050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265117|gb|ACQ46754.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 185 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVILRNDIQVL 85 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLI 67 >gi|229526104|ref|ZP_04415508.1| hypothetical protein VCA_000212 [Vibrio cholerae bv. albensis VL426] gi|229336262|gb|EEO01280.1| hypothetical protein VCA_000212 [Vibrio cholerae bv. albensis VL426] Length = 207 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RIKDIR T +E + S ++ EN S + + L + +I + Sbjct: 27 KLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQL 86 Query: 91 YD 92 ++ Sbjct: 87 FE 88 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 E + ++ ++P +G R+K IR G++ E + G+ STLS E + Sbjct: 5 IYDEYPSITLARESGEQGIEPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQ 64 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 P + +K+ + + ++ Sbjct: 65 ISPTFQAMQKLAHGLQIDMPQLF 87 >gi|193067699|ref|ZP_03048666.1| putative repressor protein [Escherichia coli E110019] gi|192959111|gb|EDV89547.1| putative repressor protein [Escherichia coli E110019] Length = 251 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R A TQK + ++A+ E G + + + + + N + +W+ Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTK-IVEIANALGVRAEWLS 85 Query: 92 DG 93 G Sbjct: 86 SG 87 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R +G++Q G L+G+ + + E G+ K I +W+ G Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVE-IANALGVRAEWLSSG 87 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + +++ + S K Sbjct: 88 VGNMSDSTVQPIQSTVSHSK 107 >gi|149921925|ref|ZP_01910368.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817187|gb|EDM76665.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 111 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 3/96 (3%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K G ++ +RK +Q+ +A + E+G S S+ + L + Sbjct: 10 KGFGKHLRRLRKTRGLSQEALATRGGLSNDTIRRLEHGTFSPSLNTLVGLATGLGLRLST 69 Query: 90 IYDGEVIDRRYEDVTNKKRL---DPYAIGARLKSIR 122 I I + L D I LK R Sbjct: 70 ILASYEIGMLPVERELADLLVGRDKEEIQTLLKVAR 105 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 +T +DP G L+ +RK +G+SQ G+ N T+ E G P + + Sbjct: 1 MTEGYAIDPKGFGKHLRRLRKTRGLSQEALATRGGLSNDTIRRLEHGTFSPSLNTLVGLA 60 Query: 163 QVTKKHLDWIY 173 L I Sbjct: 61 TGLGLRLSTIL 71 >gi|154484851|ref|ZP_02027299.1| hypothetical protein EUBVEN_02569 [Eubacterium ventriosum ATCC 27560] gi|210610460|ref|ZP_03288417.1| hypothetical protein CLONEX_00607 [Clostridium nexile DSM 1787] gi|149733804|gb|EDM49923.1| hypothetical protein EUBVEN_02569 [Eubacterium ventriosum ATCC 27560] gi|210152453|gb|EEA83459.1| hypothetical protein CLONEX_00607 [Clostridium nexile DSM 1787] Length = 66 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 V I++IR+ Q ++A V E G + S + L + + + + ++ Sbjct: 3 VTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVEDVF 62 Query: 92 DGEV 95 E Sbjct: 63 HVED 66 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 31/66 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ ++ IR+ +G+ Q + +G T+ E+G + P + +I + ++ Sbjct: 1 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVED 60 Query: 172 IYFGDE 177 ++ ++ Sbjct: 61 VFHVED 66 >gi|91975357|ref|YP_568016.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681813|gb|ABE38115.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris BisB5] Length = 317 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 28/74 (37%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + ++G R++ +R ++K +A + E + E+G + SI + + Sbjct: 23 FLLELGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIILLRRVSDALATPL 82 Query: 88 DWIYDGEVIDRRYE 101 + + + Sbjct: 83 EDLLPNSDPSIDWP 96 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +G R++++R +GMS+ K+ G+ ++ E G+ I R++ L+ Sbjct: 25 LELGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIILLRRVSDALATPLED 84 Query: 172 IY 173 + Sbjct: 85 LL 86 >gi|322804684|emb|CBZ02236.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum H04402 065] Length = 434 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A G ++L E+G + S+ YL S ++ Sbjct: 6 LGEKIKRRRKELNMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEDT 69 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K RK+ M+ + + +S E G++ P + + + Sbjct: 1 MEILSLGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAETLNTS 59 Query: 169 LDWIYFGDEVIVPKSIK 185 +++ ++ K K Sbjct: 60 IEYFMESEDTQAEKICK 76 >gi|312866087|ref|ZP_07726308.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] gi|311098491|gb|EFQ56714.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] Length = 162 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 26/73 (35%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 + +RK +Q+++A A +E+G +I L Y ++ D + Sbjct: 21 ENLIMLRKLKGFSQEKIAEKIAISRQAYGKWESGETIPNIEKCALLAEVYGVTIDSLIRE 80 Query: 94 EVIDRRYEDVTNK 106 ++ + Sbjct: 81 YRVEDTPMAPAPE 93 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%) Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 + + + + L +RK KG SQ + + + + +E G TIP I+ + +V Sbjct: 10 HYRNEEFDVLKENLIMLRKLKGFSQEKIAEKIAISRQAYGKWESGETIPNIEKCALLAEV 69 Query: 165 TKKHLDWIY 173 +D + Sbjct: 70 YGVTIDSLI 78 >gi|262174076|ref|ZP_06041752.1| hypothetical protein VII_003787 [Vibrio mimicus MB-451] gi|261890256|gb|EEY36244.1| hypothetical protein VII_003787 [Vibrio mimicus MB-451] Length = 226 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Query: 25 IRQYWKDVGTRIKDIRKANN------KTQKEMAIGANQLESAVNLFENGMCSTSIRYALY 78 +R V +R++++RK T ++ +S + +EN + S+ Sbjct: 1 MRNRDAIVASRLRELRKQKEIDDGRPWTADQVGKAIGIGQSTYSNYENEIRKPSLDRIEE 60 Query: 79 LRNEYEISFDWI 90 L Y+++ ++ Sbjct: 61 LAAFYKVTPSYL 72 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 116 ARLKSIRKDKG------MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +RL+ +RK K + + GK +G+ ST SNYE P + ++ K Sbjct: 10 SRLRELRKQKEIDDGRPWTADQVGKAIGIGQSTYSNYENEIRKPSLDRIEELAAFYKVTP 69 Query: 170 DWI 172 ++ Sbjct: 70 SYL 72 >gi|326203720|ref|ZP_08193583.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325986160|gb|EGD46993.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 184 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 33/87 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R+ + +A + +S + E + ++ + N ++SF + Sbjct: 8 ISENLKRVREEKKLSLDTVAKLSGVSKSMLGQIERCEVNPTVSTMWKIANGLKVSFSQLV 67 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + D+ N K L R+ Sbjct: 68 NHTETNVEIVDIKNLKPLLEDEGRVRI 94 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK +R++K +S KL G+ S L E+ P + KI K + Sbjct: 10 ENLKRVREEKKLSLDTVAKLSGVSKSMLGQIERCEVNPTVSTMWKIANGLKVSFSQLVNH 69 Query: 176 DEVIVP 181 E V Sbjct: 70 TETNVE 75 >gi|228993758|ref|ZP_04153663.1| hypothetical protein bpmyx0001_44830 [Bacillus pseudomycoides DSM 12442] gi|228765969|gb|EEM14618.1| hypothetical protein bpmyx0001_44830 [Bacillus pseudomycoides DSM 12442] Length = 73 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+++ R + +Q ++ + ++L E G + SI +L + + +E+ + I+ Sbjct: 5 NRVREFRAKHRMSQGDLGKVIDSSRQTISLIERGDYAPSIVLSLKIAHVFEVPVEEIFT 63 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + R++ R MSQ + GK++ T+S E+G P I + KI V + ++ Sbjct: 1 MKLQNRVREFRAKHRMSQGDLGKVIDSSRQTISLIERGDYAPSIVLSLKIAHVFEVPVEE 60 Query: 172 IYF 174 I+ Sbjct: 61 IFT 63 >gi|227511235|ref|ZP_03941284.1| XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227085530|gb|EEI20842.1| XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 244 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 11/95 (11%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D G +++ RK N TQ ++A + V+ +E ++ + + + Sbjct: 2 DFGEQLQIRRKQLNLTQAQLAQKLHVTRQTVSRWETNATYPNLDILVEMSDF-------- 53 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKD 124 ++ + ++ K +D + RLK RK Sbjct: 54 --LDLSLDKLLKGSDSKMIDAISKDVRLKQRYRKW 86 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 G +L+ RK ++Q + + L + T+S +E T P + ++ Sbjct: 1 MDFGEQLQIRRKQLNLTQAQLAQKLHVTRQTVSRWETNATYPNLDILVEMSDF 53 >gi|297195394|ref|ZP_06912792.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719236|gb|EDY63144.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 197 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 2/114 (1%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + R+ VG ++ R+A T +A + ++ EN S+R + + Sbjct: 10 KEREEPLRVGAAVRKRRRALGLTLAAVAARSGLSVPFLSQIENERAHPSMRSLQRVSDAL 69 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI-RKDKGMS-QIEFGKL 135 + S + + R + V ++++ R + G+ Sbjct: 70 DTSAERLLAASDAGRTVDVVRAGDDARTSGPSDGVRALVRGQHQLHALEFSGEK 123 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 34/91 (37%) Query: 97 DRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK 156 + K+R +P +GA ++ R+ G++ G+ LS E R P ++ Sbjct: 1 MDAKDAKDTKEREEPLRVGAAVRKRRRALGLTLAAVAARSGLSVPFLSQIENERAHPSMR 60 Query: 157 PARKIKQVTKKHLDWIYFGDEVIVPKSIKRA 187 +++ + + + + RA Sbjct: 61 SLQRVSDALDTSAERLLAASDAGRTVDVVRA 91 >gi|196034409|ref|ZP_03101818.1| DNA-binding protein [Bacillus cereus W] gi|195992951|gb|EDX56910.1| DNA-binding protein [Bacillus cereus W] Length = 190 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 13/122 (10%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 ++EY + T E+ Q VG ++ IR + +E+A + + E G + ++ Sbjct: 1 MKEYEDMQTKEVIQ---QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTL 57 Query: 74 RYALYLRNEYEISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + I + GE + + + Y ++ R Sbjct: 58 AVIWKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRA 117 Query: 124 DK 125 Sbjct: 118 CL 119 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|167834922|ref|ZP_02461805.1| hypothetical protein Bpse38_00430 [Burkholderia thailandensis MSMB43] Length = 131 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + R+ +RK TQ+++A A VN +E G ++ L +S D + Sbjct: 2 NFSDRLAMLRKQRGLTQQQLADRAKVHLVQVNRYEAGASRPAVDVVKRLAVALSVSADAL 61 Query: 91 YDGEVI 96 E Sbjct: 62 LFDEDE 67 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 RL +RK +G++Q + + ++ YE G + P + +++ D Sbjct: 1 MNFSDRLAMLRKQRGLTQQQLADRAKVHLVQVNRYEAGASRPAVDVVKRLAVALSVSADA 60 Query: 172 IYFGDEVIVPKS 183 + F ++ P Sbjct: 61 LLFDEDEYGPDE 72 >gi|241258713|ref|YP_002978597.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863183|gb|ACS60846.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 152 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 6/102 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ R+ +Q+ + V +E G+ + + S + + Sbjct: 13 VGARIRMRRQLLGMSQERLGEQIGVTFQQVQKYEKGINRIGASRLQRIAEVLQTSPSFFF 72 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQIEF 132 + E + + LD A + +R +G+ Sbjct: 73 EQENSE-----PLTLQGLDLSANMEPVAEFLRTKEGLVLNRA 109 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 +V +D Y AR++ R+ GMSQ G+ +G+ + YE+G ++ Sbjct: 1 MNVKTANAIDSYVG-ARIRMRRQLLGMSQERLGEQIGVTFQQVQKYEKGINRIGASRLQR 59 Query: 161 IKQVTKKHLDWIYFGDEVIVPKSIK 185 I +V + +F E P +++ Sbjct: 60 IAEVLQTSPS-FFFEQENSEPLTLQ 83 >gi|126010900|ref|YP_001039870.1| putative repressor protein [Vibrio phage VP882] gi|123203910|gb|ABM73422.1| putative repressor protein [Vibrio phage VP882] Length = 243 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 4/93 (4%) Query: 1 MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGAN--QLE 58 M + + S+ +++ + + + + + G I+ +RKA T + + N Sbjct: 1 MHIRRKIFNSILTIRIDARLFSTDYK--MMNFGNVIRRLRKAKGWTLQRVCEEMNGAIQT 58 Query: 59 SAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ E G + S+ A + S D + Sbjct: 59 GHLSRIERGELTPSVYIARNIARSLGTSLDTML 91 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLG--MPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 G ++ +RK KG + + + + LS E+G P + AR I + Sbjct: 27 MMNFGNVIRRLRKAKGWTLQRVCEEMNGAIQTGHLSRIERGELTPSVYIARNIARSLGTS 86 Query: 169 LDWIY 173 LD + Sbjct: 87 LDTML 91 >gi|19551915|ref|NP_599917.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62389574|ref|YP_224976.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|41324909|emb|CAF19390.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 124 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 6/89 (6%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS------TSIRYALYLRN 81 Y +R+K +R +Q+E+A + + ++ +E + + L Sbjct: 9 YGHAFASRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQ 68 Query: 82 EYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 ++ + + V +D Sbjct: 69 ALDVPPIALMPAGSVPVAKICVDETAAID 97 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI------PEIKPARKIKQVT 165 +A +RLK +R +G SQ E L G+ +T+SNYE+ P++ ++ Q Sbjct: 11 HAFASRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQAL 70 Query: 166 KKHLDWIY 173 + Sbjct: 71 DVPPIALM 78 >gi|329928143|ref|ZP_08282089.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|328938020|gb|EGG34419.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 185 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + +K +R+ + ++A ++ + E G S SI + N ++SF + Sbjct: 8 LANNLKLLREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITTVWKIANGLKLSFSSLI 67 Query: 92 D 92 + Sbjct: 68 N 68 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +R+ + +S + ++ G+ + L E+G + P I KI K + Sbjct: 10 NNLKLLREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITTVWKIANGLKLSFSSLI 67 >gi|284028971|ref|YP_003378902.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808264|gb|ADB30103.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 185 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG + + R+ + ++++ A ++ E G+ S L IS + +Y Sbjct: 15 VGEYLAEQRRHAQLSLRQLSDLAGVSNPYLSQIERGLRKPSADVLQQLAKALRISAETLY 74 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 L R+ +S + L G+ N LS E+G P +++ + + + +Y Sbjct: 17 EYLAEQRRHAQLSLRQLSDLAGVSNPYLSQIERGLRKPSADVLQQLAKALRISAETLYVR 76 Query: 176 DEVIVP 181 ++ P Sbjct: 77 AGILDP 82 >gi|256370256|ref|YP_003107767.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|256000419|gb|ACU48818.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] Length = 642 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY-DG 93 + +RK T +A ++ +A++ ENG + + L N I F + Sbjct: 2 NLACLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELVGAR 61 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL--LGMP 139 ++ D + + +D +++ D + G+ Sbjct: 62 NDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVS 109 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L +RK +G++ +L + + +S E G P ++ + + Sbjct: 1 MNLACLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58 >gi|229199676|ref|ZP_04326321.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293] gi|228583822|gb|EEK41995.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293] Length = 61 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +I +RK TQ+E+A+ + ++ ENG S+ AL + S + I+ Sbjct: 2 NQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ +RK K ++Q E +G+ + LSN E G+ P + A KI +V ++ I+ Sbjct: 1 MNQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60 >gi|254507617|ref|ZP_05119750.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus 16] gi|219549504|gb|EED26496.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus 16] Length = 103 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLS----NYEQGRTIPEIKPARKIKQVTKKHL 169 I ARLK+ RK ++Q E G +GM S+ S +YE+GR +P+I R+I + L Sbjct: 7 IPARLKAARKKAKITQKELGVKIGMEESSASGRMNHYEKGRHVPDIGTLRRIAEELDVPL 66 Query: 170 DWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSNP 205 ++ + +E+ + + + KK KS P Sbjct: 67 NYFFCDNELSAELACTIDRMSDEEKKRYWKTKSRKP 102 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYALYLRNEYEISF 87 + R+K RK TQKE+ + ES+ +N +E G I + E ++ Sbjct: 7 IPARLKAARKKAKITQKELGVKIGMEESSASGRMNHYEKGRHVPDIGTLRRIAEELDVPL 66 Query: 88 DWIYDGEVID 97 ++ + + Sbjct: 67 NYFFCDNELS 76 >gi|254461150|ref|ZP_05074566.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206677739|gb|EDZ42226.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 190 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 7/69 (10%), Positives = 26/69 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +RK+ T ++A ++ ++ E + S+ + ++ ++ Sbjct: 12 LGADLRALRKSRGLTLSDLADALDRSLGWISQVERDLSEPSVFDLKQIAKILDVPVSILF 71 Query: 92 DGEVIDRRY 100 + Sbjct: 72 GQAPTPAQE 80 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 28/58 (48%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 A L+++RK +G++ + L +S E+ + P + ++I ++ + ++ Sbjct: 14 ADLRALRKSRGLTLSDLADALDRSLGWISQVERDLSEPSVFDLKQIAKILDVPVSILF 71 >gi|160893918|ref|ZP_02074697.1| hypothetical protein CLOL250_01473 [Clostridium sp. L2-50] gi|156864296|gb|EDO57727.1| hypothetical protein CLOL250_01473 [Clostridium sp. L2-50] Length = 65 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K+IR++ Q ++A ++ E G C+ S + L + + + + ++ Sbjct: 5 NNLKEIRESRGIIQDDLAAATGFCTRTISRIERGKCTPSAEFMLRISAYFNLLVEDVFHI 64 Query: 94 E 94 E Sbjct: 65 E 65 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ LK IR+ +G+ Q + G T+S E+G+ P + +I ++ Sbjct: 1 MAVVNNLKEIRESRGIIQDDLAAATGFCTRTISRIERGKCTPSAEFMLRISAYFNLLVED 60 Query: 172 IYFGD 176 ++ + Sbjct: 61 VFHIE 65 >gi|62179766|ref|YP_216183.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127399|gb|AAX65102.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 259 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 6/92 (6%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDW 89 ++G R++ +R+A N E+A + ++ E G + + L + + Sbjct: 2 NIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAE 61 Query: 90 IYDGEVIDRRYEDVTNKKRLDPYAIGARLKSI 121 ++ + T K D A +K + Sbjct: 62 LFTSDSK-----GNTVCKHSDMRKDSANVKDL 88 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 11/94 (11%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIK-PARKIKQVTKKHLD 170 IG R++ +R+ K M E + +G+ + +S E G+ + ++ + Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIA 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 ++ D +KGN K S K S+N Sbjct: 61 ELFTSD----------SKGNTVCKHSDMRKDSAN 84 >gi|15894244|ref|NP_347593.1| Xre family DNA-binding domain-/TPR repeat-containing protein [Clostridium acetobutylicum ATCC 824] gi|15023861|gb|AAK78933.1|AE007611_1 Xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium acetobutylicum ATCC 824] gi|325508372|gb|ADZ20008.1| Xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium acetobutylicum EA 2018] Length = 434 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A G ++L E+G + S+ YL S +++ Sbjct: 6 LGEKIKARRKELNMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLAGALNTSVEYLM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEET 69 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K+ RK+ M+ + + +S E G++ P + + Sbjct: 1 MEILSLGEKIKARRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAGALNTS 59 Query: 169 LDWIYFGDEVIVPK 182 ++++ +E K Sbjct: 60 VEYLMESEETQAEK 73 >gi|317403702|gb|EFV84189.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 189 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLR 80 IT VG +K +RKA +Q +A + + E G + S+ L Sbjct: 7 ITNSDSDVLTHVGANLKRLRKAAGLSQGALAEASGISRRMIAGLEAGNSNISLSSLDKLA 66 Query: 81 NEYEISFDWIYDGEVIDRRYED 102 E+ F + +RR + Sbjct: 67 QALEVGFVDLVSDPAPERRRIE 88 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 A LK +RK G+SQ + G+ ++ E G + + K+ Q + Sbjct: 20 ANLKRLRKAAGLSQGALAEASGISRRMIAGLEAGNSNISLSSLDKLAQALEV 71 >gi|295687480|ref|YP_003591173.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295429383|gb|ADG08555.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 140 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 1/88 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG RI+ RK +Q+ +A + +E G S + + S + + Sbjct: 18 VGARIRMRRKILGVSQERLAEDLGLTFQQIQKYERGANRVSASKLYEIAKSLQASVGYFF 77 Query: 92 DG-EVIDRRYEDVTNKKRLDPYAIGARL 118 +G E + D L Sbjct: 78 EGLETTVDGVSEPGEPFVHDFLMTSEGL 105 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GAR++ RK G+SQ + LG+ + YE+G +I + + + + Sbjct: 16 LHVGARIRMRRKILGVSQERLAEDLGLTFQQIQKYERGANRVSASKLYEIAKSLQASVGY 75 Query: 172 IYFGDEVIVPKSIKRAK 188 + G E V + + Sbjct: 76 FFEGLETTVDGVSEPGE 92 >gi|271962430|ref|YP_003336626.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505605|gb|ACZ83883.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 117 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 ++G ++++IRK +QK +A + + A++ E G I L L + Sbjct: 35 ELGDQLREIRKRRGLSQKVVAERSGMSQPALSRIEGGGGIPDIATLLRLGAAMGV 89 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 +L+ IRK +G+SQ + GM LS E G IP+I ++ Sbjct: 39 QLREIRKRRGLSQKVVAERSGMSQPALSRIEGGGGIPDIATLLRLGAAMGV 89 >gi|228907416|ref|ZP_04071274.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] gi|228852277|gb|EEM97073.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] Length = 404 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK +RK TQ ++A +S ++ ENG + S++ Y+ + ++ Sbjct: 4 LGAKIKTLRKEKKLTQTDLAGSV-LTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 92 DGEVID 97 + + ++ Sbjct: 63 EEDDVE 68 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K++RK+K ++Q + + + S LS E G+ P +K + I + ++ Sbjct: 6 AKIKTLRKEKKLTQTDLAGSV-LTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLLEE 64 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDK 200 D+V + I+ K K +K D+ Sbjct: 65 DDVEIVALIQ--KMEPLIKANKCDE 87 >gi|168750476|ref|ZP_02775498.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|168757678|ref|ZP_02782685.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|168783674|ref|ZP_02808681.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|168802673|ref|ZP_02827680.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|195937964|ref|ZP_03083346.1| phage-related repressor protein [Escherichia coli O157:H7 str. EC4024] gi|208819582|ref|ZP_03259902.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|188015290|gb|EDU53412.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|188999040|gb|EDU68026.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189355373|gb|EDU73792.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189375389|gb|EDU93805.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208739705|gb|EDZ87387.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] Length = 229 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R A TQK + ++A+ E G + + + + + N + +W+ Sbjct: 5 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTK-IVEIANALGVRAEWLS 63 Query: 92 DG 93 G Sbjct: 64 SG 65 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R +G++Q G L+G+ + + E G+ K I +W+ G Sbjct: 7 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVE-IANALGVRAEWLSSG 65 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + +++ + S K Sbjct: 66 VGNMSDSTVQPIQPTVSHSK 85 >gi|167769004|ref|ZP_02441057.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM 17241] gi|167668644|gb|EDS12774.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM 17241] Length = 136 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G I+ R+A TQ+E+A A S ++ E G + +I + I Sbjct: 10 KLHRMLGKNIRFWREARGFTQEELAFRAQTSSSYISKMELGKENPTITVLERIAKALAID 69 Query: 87 FDWIY 91 + Sbjct: 70 PCMLL 74 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G ++ R+ +G +Q E +S +S E G+ P I +I + Sbjct: 12 HRMLGKNIRFWREARGFTQEELAFRAQTSSSYISKMELGKENPTITVLERIAKALAIDPC 71 Query: 171 WIY 173 + Sbjct: 72 MLL 74 >gi|21323451|dbj|BAB98078.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] Length = 128 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 34/101 (33%), Gaps = 11/101 (10%) Query: 21 ITPEIRQ-----YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS----- 70 ++ E+ + Y +R+K +R +Q+E+A + + ++ +E + Sbjct: 1 MSKEMSEKRWSSYGHAFASRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAV 60 Query: 71 -TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLD 110 + L ++ + + V +D Sbjct: 61 DPQLSNIYRLAQALDVPPIALMPAGSVPVAKICVDETAAID 101 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI------PEIKPARKIKQVT 165 +A +RLK +R +G SQ E L G+ +T+SNYE+ P++ ++ Q Sbjct: 15 HAFASRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQAL 74 Query: 166 KKHLDWIY 173 + Sbjct: 75 DVPPIALM 82 >gi|39997211|ref|NP_953162.1| transcriptional regulator [Geobacter sulfurreducens PCA] gi|39984101|gb|AAR35489.1| transcriptional regulator, putative [Geobacter sulfurreducens PCA] Length = 143 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K + + E+A A+ SA+ F G S + L N + S D++ Sbjct: 35 ERLKSLMADKGLSSAELADRADLARSALTQFFGGERKPSADALVKLANVLDSSTDYLLGR 94 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARL 118 + N K ++ ++ + L Sbjct: 95 RDSTDVAALLQNDKIMELISLFSEL 119 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 G + E + +D RLKS+ DKG+S E + S L+ + G Sbjct: 11 QGMNETAQPEKRKRGEVVDAAVFVERLKSLMADKGLSSAELADRADLARSALTQFFGGER 70 Query: 152 IPEIKPARKIKQVTKKHLDWIY 173 P K+ V D++ Sbjct: 71 KPSADALVKLANVLDSSTDYLL 92 >gi|16802791|ref|NP_464276.1| hypothetical protein lmo0749 [Listeria monocytogenes EGD-e] gi|224501947|ref|ZP_03670254.1| hypothetical protein LmonFR_05442 [Listeria monocytogenes FSL R2-561] gi|255030915|ref|ZP_05302866.1| hypothetical protein LmonL_20598 [Listeria monocytogenes LO28] gi|16410138|emb|CAC98827.1| lmo0749 [Listeria monocytogenes EGD-e] Length = 68 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +K R +K +SQ E KL+ + T+S+ E G P + I + K LD + Sbjct: 1 MKNINMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLDDL 60 Query: 173 YFGDEV 178 ++ ++ Sbjct: 61 FWEEDD 66 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 K++ +K R + +Q+E+A + ++ E G + ++ + + + D Sbjct: 1 MKNI--NMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLD 58 Query: 89 WIYDGEVID 97 ++ E + Sbjct: 59 DLFWEEDDN 67 >gi|269961337|ref|ZP_06175702.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833888|gb|EEZ87982.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 518 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 31/171 (18%) Query: 32 VGTRIKDIRKANNKTQKEMAIGA-------NQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +GT+I+++RK N+ T ++++ S +++ E G SI + ++ Sbjct: 14 LGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVFQ 73 Query: 85 ISFDWIYDGEVI-DRRYEDVTNKKRLDPYA------IGARLKSIRKDKGMSQ-----IEF 132 W D E + + N+ ++ A + I + +SQ +F Sbjct: 74 KEPAWFLDDEPELEAITPNKGNRGGINGMALEPSFLFSNDILQIAIPEMLSQTGITGRQF 133 Query: 133 GKLL-----GMPNSTLSNYEQ-------GRTIPEIKPARKIKQVTKKHLDW 171 LL + + E+ R ++ I + + W Sbjct: 134 AHLLIRAHQENHQNHFPDLERAAEEVGLKRLNLSVEDLIDIAKSMGLDIRW 184 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEF-GKLLGM------PNSTLSNYEQGRTIPEIKPARKIKQV 164 + +G +++++RK+ ++ + + + + S LS E+G+ +P I I +V Sbjct: 12 HFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEV 71 Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQ 191 +K W D+ ++I KGN+ Sbjct: 72 FQKEPAWFL--DDEPELEAITPNKGNR 96 >gi|269217813|ref|ZP_06161667.1| conserved domain protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212748|gb|EEZ79088.1| conserved domain protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 122 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 29/74 (39%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R + V R+ +R A T++++A + E G + S+ AL + + Sbjct: 47 ARSRDERVHNRLAVLRAARGVTRRKLAEELGIHYQTMGYLERGEYAPSLHLALRIARWFG 106 Query: 85 ISFDWIYDGEVIDR 98 + + ++ + Sbjct: 107 VPVESVFSLDEFPP 120 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RL +R +G+++ + + LG+ T+ E+G P + A +I + ++ ++ Sbjct: 55 HNRLAVLRAARGVTRRKLAEELGIHYQTMGYLERGEYAPSLHLALRIARWFGVPVESVFS 114 Query: 175 GDE 177 DE Sbjct: 115 LDE 117 >gi|266619362|ref|ZP_06112297.1| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288869117|gb|EFD01416.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 355 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 I++ RK TQ+++A+ AVN +E G+ + L + + + Sbjct: 7 IREKRKELGLTQEKVAVYLGVSAPAVNKWEKGITCPDVSVLPALARLLKTDLNTLLC 63 Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 36/73 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+ ++ RK+ G++Q + LG+ ++ +E+G T P++ + ++ K L+ Sbjct: 1 MAMNTVIREKRKELGLTQEKVAVYLGVSAPAVNKWEKGITCPDVSVLPALARLLKTDLNT 60 Query: 172 IYFGDEVIVPKSI 184 + E + + I Sbjct: 61 LLCFKEELTEQEI 73 >gi|260461784|ref|ZP_05810030.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|319785325|ref|YP_004144801.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032425|gb|EEW33690.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|317171213|gb|ADV14751.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 72 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 K +G ++ IR+ TQ+++A + + ++ E G + +I L +S Sbjct: 4 RKLIGRNVQRIRQRKRLTQEQLADISGFSQQYISGLEKGRRNPTIITIYELALALGVS 61 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ IR+ K ++Q + + G +S E+GR P I ++ + Sbjct: 9 RNVQRIRQRKRLTQEQLADISGFSQQYISGLEKGRRNPTIITIYELALALGVSHMDLVRP 68 Query: 176 DE 177 D+ Sbjct: 69 DK 70 >gi|254497251|ref|ZP_05110059.1| prophage repressor CI-like protein [Legionella drancourtii LLAP12] gi|254353479|gb|EET12206.1| prophage repressor CI-like protein [Legionella drancourtii LLAP12] Length = 224 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 11/105 (10%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G RI R+A T+K ++ + S +N +E G+ + L +++ Sbjct: 5 EKIGERIFQERQAKGLTRKALSELTDDLKPSRINNWERGIRTPGPEEIKQLAEALDVAPG 64 Query: 89 WIYDGEVIDRRYEDVTN----------KKRLDPYAIGARLKSIRK 123 ++ + ++ ++ DP +K RK Sbjct: 65 YLMCLTDDKQVKQEFPWLGALIPLLNAQQACDPKQYIQAIKEDRK 109 Score = 39.2 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLG-MPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 R+ R+ KG+++ +L + S ++N+E+G P + +++ + ++ Sbjct: 9 ERIFQERQAKGLTRKALSELTDDLKPSRINNWERGIRTPGPEEIKQLAEALDVAPGYLM 67 >gi|268591032|ref|ZP_06125253.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291313838|gb|EFE54291.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 88 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 30/65 (46%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G +IK +R + ++A + ++ +ENG+ S + + +++ + Sbjct: 24 KNIGKKIKLLRSEYRLSGSDLARIIGISQQQLSRYENGLSDISTSKIMLISVYFKVDVCY 83 Query: 90 IYDGE 94 + + Sbjct: 84 FFKKD 88 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 101 EDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 E+ N + IG ++K +R + +S + +++G+ LS YE G + Sbjct: 13 ENKKNITNIVAKNIGKKIKLLRSEYRLSGSDLARIIGISQQQLSRYENGLSDISTSKIML 72 Query: 161 IKQVTKKHLDWIYFGD 176 I K + + + D Sbjct: 73 ISVYFKVDVCYFFKKD 88 >gi|221210345|ref|ZP_03583325.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221169301|gb|EEE01768.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 90 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G RIK+ R A K+Q+ +A A + ++ E G+ + SI + ++ ++ Sbjct: 1 MGKRIKECRHATEKSQETLAFEALVDRTYISAIERGIANPSIETLANICYSLNVTLAELF 60 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIR 122 +R A +K R Sbjct: 61 ---APLDGVSLKPTGERRANAATPPEIKRQR 88 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 +G R+K R SQ + + +S E+G P I+ I L ++ Sbjct: 1 MGKRIKECRHATEKSQETLAFEALVDRTYISAIERGIANPSIETLANICYSLNVTLAELF 60 >gi|163737399|ref|ZP_02144816.1| hypothetical protein RGBS107_17748 [Phaeobacter gallaeciensis BS107] gi|163740931|ref|ZP_02148324.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161385922|gb|EDQ10298.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161388925|gb|EDQ13277.1| hypothetical protein RGBS107_17748 [Phaeobacter gallaeciensis BS107] Length = 131 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 1/92 (1%) Query: 44 NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 TQ ++A ++ + +E + + +S W+ GE Sbjct: 28 GMTQAQLARRLGIKKTTLAGWEQDLSEPRANKLSMMAGLLNVSMRWLLTGEGEGMEAPAG 87 Query: 104 TNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 D A+ L+ +R++ + +L Sbjct: 88 EQV-PQDLAAVMTELRQLREELRGNADRAARL 118 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 126 GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 GM+Q + + LG+ +TL+ +EQ + P + + + W+ G+ + Sbjct: 28 GMTQAQLARRLGIKKTTLAGWEQDLSEPRANKLSMMAGLLNVSMRWLLTGEGEGME 83 >gi|157370308|ref|YP_001478297.1| DNA-binding transcriptional repressor PuuR [Serratia proteamaculans 568] gi|157322072|gb|ABV41169.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 185 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G R+ IR+ +Q+ A + SA++ E S +I L Y +S + Sbjct: 9 GKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSLSAFFA 68 Query: 93 GEVIDRRYEDVTNKKRL 109 I + V + + L Sbjct: 69 EPEIPDEPQIVIDSQDL 85 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 33/73 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A G RL IR+ G+SQ +L G+ +S +S EQ + P I +K+ V L Sbjct: 6 LAPGKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSLSA 65 Query: 172 IYFGDEVIVPKSI 184 + E+ I Sbjct: 66 FFAEPEIPDEPQI 78 >gi|52787332|ref|YP_093161.1| hypothetical protein BLi03647 [Bacillus licheniformis ATCC 14580] gi|52349834|gb|AAU42468.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 134 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 19/139 (13%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISF 87 G R+K++R+ + + ++A+ A +A++ ENG L ++ + Sbjct: 3 MTRFGERLKELREQRSLSVNQLAMYAGVSAAAISRIENGHRGVPKPATIRKLAEALKMPY 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + D R E + ++ E G+ + L E Sbjct: 63 EQLMDIAGYMRADEIREQPRG-----------------YVTMQEIAAKHGVEDLWLFKPE 105 Query: 148 QGRTIPEIKPARKIKQVTK 166 + + + ++Q Sbjct: 106 KWDCL-SREDLLNLEQYFH 123 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKK 167 + G RLK +R+ + +S + G+ + +S E R +P+ RK+ + K Sbjct: 1 MAMTRFGERLKELREQRSLSVNQLAMYAGVSAAAISRIENGHRGVPKPATIRKLAEALKM 60 Query: 168 HLDWIY 173 + + Sbjct: 61 PYEQLM 66 >gi|328885628|emb|CCA58867.1| Transcriptional regulator, XRE family [Streptomyces venezuelae ATCC 10712] Length = 476 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 39/80 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 A+L+ +R+++GM+Q+E + LG+ S L+ E + +I +V ++ Sbjct: 9 IYAHAKLRRLRRERGMNQVELARALGLSTSYLNQIEHSQRPLTAPVLLRIAEVFGVDPEF 68 Query: 172 IYFGDEVIVPKSIKRAKGNQ 191 +E + ++ A G++ Sbjct: 69 FSEAEEERLATDLRAALGDE 88 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 24/64 (37%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +++ +R+ Q E+A S +N E+ + L + + + ++ + Sbjct: 13 AKLRRLRRERGMNQVELARALGLSTSYLNQIEHSQRPLTAPVLLRIAEVFGVDPEFFSEA 72 Query: 94 EVID 97 E Sbjct: 73 EEER 76 >gi|324116784|gb|EGC10698.1| peptidase S24 [Escherichia coli E1167] Length = 229 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R A TQK + ++A+ E G + + + + + N + +W+ Sbjct: 5 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTK-IVEIANALGVRAEWLS 63 Query: 92 DG 93 G Sbjct: 64 SG 65 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R +G++Q G L+G+ + + E G+ K I +W+ G Sbjct: 7 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVE-IANALGVRAEWLSSG 65 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + +++ S K Sbjct: 66 VGNMSDSTVQPIPSTVSHSK 85 >gi|307327702|ref|ZP_07606886.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] gi|306886600|gb|EFN17602.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] Length = 486 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 11/122 (9%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + ++G R+ +R A TQ+++A A + V+ E G S +L + IS Sbjct: 23 ESTTEIGRRVLRLRTARGFTQRQLAEPA-YTAAYVSTLEAGKVRPSEAALRHLADRLGIS 81 Query: 87 FDWIYDGEVID----------RRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 ++ + G + D + +++ + G ++ LL Sbjct: 82 YEELTTGRSPRDATRLRAAVTDARRALATGAAEDAAELFEQVRDEAERLGFAEERGAALL 141 Query: 137 GM 138 G+ Sbjct: 142 GL 143 Score = 38.4 bits (88), Expect = 0.64, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 1/68 (1%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVI 179 +R +G +Q + + + +S E G+ P R + + + G Sbjct: 34 RLRTARGFTQRQLAEPAY-TAAYVSTLEAGKVRPSEAALRHLADRLGISYEELTTGRSPR 92 Query: 180 VPKSIKRA 187 ++ A Sbjct: 93 DATRLRAA 100 >gi|302537873|ref|ZP_07290215.1| DNA-binding protein [Streptomyces sp. C] gi|302446768|gb|EFL18584.1| DNA-binding protein [Streptomyces sp. C] Length = 282 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG ++ R+ +Q E+A A+ ++ E G S L L + ++ Sbjct: 24 PAVGALLRTWRERRGISQLELAGRADSSSRHISFIETGRSRPSEEMVLRLADRLDVPV 81 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 A+GA L++ R+ +G+SQ+E + +S E GR+ P + ++ + Sbjct: 25 AVGALLRTWRERRGISQLELAGRADSSSRHISFIETGRSRPSEEMVLRLADRLDVPV 81 >gi|300940966|ref|ZP_07155490.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 21-1] gi|300454290|gb|EFK17783.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 21-1] Length = 93 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G+ IK R+A T +E++ + +S ++ EN +I + I + I Sbjct: 3 DIGSTIKLCREARKLTLQELSDRTDLTKSYLSRIENNQRDPTITALEKISLALHIPLNII 62 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + ++ ++ + I L Sbjct: 63 ILLSESEETNDEFSDINHMLKKTIMDTL 90 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 IG+ +K R+ + ++ E + S LS E + P I KI L+ Sbjct: 1 MLDIGSTIKLCREARKLTLQELSDRTDLTKSYLSRIENNQRDPTITALEKISLALHIPLN 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199 I E + + + N KK+ D Sbjct: 61 IIILLSES-EETNDEFSDINHMLKKTIMD 88 >gi|291537143|emb|CBL10255.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 86 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 21 ITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFE--NGMCSTSIRYALY 78 +T + Q +K +G I RK +Q ++A + ++ E N S S+ + Sbjct: 1 MTSKHEQEFKMIGLNIAYFRKLKGISQMKLAETIGISRTHMSNIEAPNMPTSVSLETLMD 60 Query: 79 LRNEYEISFDWIY 91 + + +I + Sbjct: 61 IADALDIPAYVLL 73 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE--QGRTIPEIKPARKIKQVTKKHLDWIY 173 + RK KG+SQ++ + +G+ + +SN E T ++ I + Sbjct: 15 NIAYFRKLKGISQMKLAETIGISRTHMSNIEAPNMPTSVSLETLMDIADALDIPAYVLL 73 >gi|326204104|ref|ZP_08193965.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] gi|325985871|gb|EGD46706.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] Length = 184 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 36/95 (37%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + + +RIK++R+ + T + +A E A +E+G + + + N++ Sbjct: 1 MSEQIRLIASRIKELREISGITVEALAAELKISEEAYRSYESGETDIPVSFLYQIANKFN 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 + I G+ + + K Sbjct: 61 VELSAIITGDAPKLHTYQLVRDGKGVSVERREHYK 95 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 +R+K +R+ G++ L + +YE G T + +I L I G Sbjct: 10 SRIKELREISGITVEALAAELKISEEAYRSYESGETDIPVSFLYQIANKFNVELSAIITG 69 Query: 176 D--EVIVPKSIKRAKGNQSSKKSKKDKKS 202 D ++ + ++ KG ++ S Sbjct: 70 DAPKLHTYQLVRDGKGVSVERREHYKYHS 98 >gi|251777923|ref|ZP_04820843.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082238|gb|EES48128.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 141 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 17/133 (12%) Query: 32 VGTRIKDIRKANNKTQKEMAIGAN-QLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G ++K R NN TQ ++A S + E ++ L + + ++ + Sbjct: 18 IGEKLKYYRLKNNLTQDKLAEIIGYYAGSCIKDVELNRKLPRRNFSKKLASYFNLNTKYF 77 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 +D + D LK+ RK +S + + + +N+E G Sbjct: 78 FDNYLEDTDNIKDL-------------LKNYRKKYNLSIKQASNKFSISQTAWTNWESGG 124 Query: 151 TIP---EIKPARK 160 P + +K Sbjct: 125 KYPIRDTYELLKK 137 Score = 36.9 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSN-YEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +LK R ++Q + +++G + E R +P ++K+ + + +F Sbjct: 20 EKLKYYRLKNNLTQDKLAEIIGYYAGSCIKDVELNRKLPRRNFSKKLASYFNLNTKY-FF 78 Query: 175 GDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + + +IK N K + K++SN Sbjct: 79 DNYLEDTDNIKDLLKNYRKKYNLSIKQASN 108 >gi|315497496|ref|YP_004086300.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315415508|gb|ADU12149.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 470 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 +G R+K +R N TQ MA S +N E + + L L + Y++ Sbjct: 10 LGGRVKRLRHDLNLTQTRMAEDLGVSPSYLNHLERNQRPVTAQVLLKLASTYDLDM 65 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 +K +R D ++Q + LG+ S L++ E+ + + K+ + Sbjct: 14 VKRLRHDLNLTQTRMAEDLGVSPSYLNHLERNQRPVTAQVLLKLASTYDLDM 65 >gi|237735295|ref|ZP_04565776.1| predicted protein [Mollicutes bacterium D7] gi|229381040|gb|EEO31131.1| predicted protein [Coprobacillus sp. D7] Length = 70 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 34/68 (50%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G RIK++R N +Q+E+A ++ ++ E G + S++ + N + Sbjct: 1 MDKIEVKFGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGTRNVSLKSIEKIANGFA 60 Query: 85 ISFDWIYD 92 ++ ++D Sbjct: 61 VNLKELFD 68 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 G R+K +R + +SQ E G+ + +S+ E+G +K KI +L ++ Sbjct: 8 FGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGTRNVSLKSIEKIANGFAVNLKELF 67 >gi|229169229|ref|ZP_04296943.1| Transcriptional regulator, Xre [Bacillus cereus AH621] gi|228614295|gb|EEK71406.1| Transcriptional regulator, Xre [Bacillus cereus AH621] Length = 190 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +++A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEDLAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S + + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEDLAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|218510506|ref|ZP_03508384.1| XRE family transcriptional regulator [Rhizobium etli Brasil 5] Length = 468 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 P + ++ +G R++ +RK TQ MA S V L E + L L Sbjct: 2 PVMEKHGVYLGPRLRRLRKDLGLTQAMMASDLEVSPSYVALMEGNQRPVTAELLLRLART 61 Query: 83 YEISFDWIYDGEVIDRRYEDVTNKKR 108 Y+I + D + + K Sbjct: 62 YKIDMSVLADDSTPELLGRLQSTIKD 87 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 L+ +RKD G++Q L + S ++ E + + ++ + K + + Sbjct: 15 LRRLRKDLGLTQAMMASDLEVSPSYVALMEGNQRPVTAELLLRLARTYKIDMSVL 69 >gi|187776986|ref|ZP_02993459.1| hypothetical protein CLOSPO_00531 [Clostridium sporogenes ATCC 15579] gi|187773914|gb|EDU37716.1| hypothetical protein CLOSPO_00531 [Clostridium sporogenes ATCC 15579] Length = 434 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A G ++L E+G + S+ YL S ++ Sbjct: 6 LGEKIKRRRKELNMTLKDLA-GDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 92 DGEVI 96 + E Sbjct: 65 ESEDT 69 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K RK+ M+ + + +S E G++ P + + + Sbjct: 1 MEILSLGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAETLNTS 59 Query: 169 LDWIYFGDEVIVPKSIK 185 +++ ++ K K Sbjct: 60 IEYFMESEDTQAEKICK 76 >gi|160947244|ref|ZP_02094411.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270] gi|158446378|gb|EDP23373.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270] Length = 180 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 D+G +IK++R TQ+E+A A + ++ E G+ S SI + + Sbjct: 2 DIGEKIKNLRTILGLTQEELAERAELTKGFISQLERGLTSPSISSLEDVLEALGTNI 58 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG ++K++R G++Q E + + +S E+G T P I + + ++ Sbjct: 1 MDIGEKIKNLRTILGLTQEELAERAELTKGFISQLERGLTSPSISSLEDVLEALGTNISD 60 >gi|160884331|ref|ZP_02065334.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483] gi|255691648|ref|ZP_05415323.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii DSM 17565] gi|156110070|gb|EDO11815.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483] gi|260622719|gb|EEX45590.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii DSM 17565] Length = 94 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G IK +RK + +QKE++ +A+ E+G S + N +I ++ Sbjct: 2 DIGNAIKLLRKRKDISQKELSNLCGISANALCSIESGGTFPSKSTIAKICNALKIPESYL 61 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120 + ED+ KR+ + +K Sbjct: 62 L---LFSISEEDIPENKRILYKTLCESIKE 88 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 4/88 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K +RK K +SQ E L G+ + L + E G T P KI K + Sbjct: 1 MDIGNAIKLLRKRKDISQKELSNLCGISANALCSIESGGTFPSKSTIAKICNALKIPESY 60 Query: 172 IYFG----DEVIVPKSIKRAKGNQSSKK 195 + +++ K I +S K+ Sbjct: 61 LLLFSISEEDIPENKRILYKTLCESIKE 88 >gi|126433238|ref|YP_001068929.1| hypothetical protein Mjls_0627 [Mycobacterium sp. JLS] gi|126233038|gb|ABN96438.1| protein of unknown function DUF955 [Mycobacterium sp. JLS] Length = 475 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R +Q +A S +N E+ + ++ L + + + D + Sbjct: 6 VGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLD 110 D R + +D Sbjct: 64 FASQDDTRLVAELREVTMD 82 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 35/84 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+R++ +R ++G SQ ++L + S L+ E + +I +V Sbjct: 1 MAKTFVGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 + D+ + ++ ++ Sbjct: 61 ATFFASQDDTRLVAELREVTMDRE 84 >gi|83648919|ref|YP_437354.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83636962|gb|ABC32929.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 106 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWI 90 +G +IK++RK T +++A +S + EN G+ S + +++ +++ Sbjct: 5 LGAKIKELRKKKGLTLEQLAEKTGSGKSYIWEIENKGVKRPSAEKLTLIAKALDVTTEFL 64 Query: 91 YDGEVIDRRYEDVTN 105 D + + Sbjct: 65 VDNSQAEITEDQEKE 79 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLDWIYF 174 A++K +RK KG++ + + G S + E P + I + +++ Sbjct: 7 AKIKELRKKKGLTLEQLAEKTGSGKSYIWEIENKGVKRPSAEKLTLIAKALDVTTEFLVD 66 Query: 175 GDEVIVPKSIKR 186 + + + ++ Sbjct: 67 NSQAEITEDQEK 78 >gi|163940620|ref|YP_001645504.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862817|gb|ABY43876.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 422 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G RI+ +R TQ E+ + ++ E+G S + + + + D++ Sbjct: 2 EIGERIRQVRMHKGLTQGELVSEI-CSITYLSRIESGKIKPSSSFLKQVSKKLGVDCDFL 60 Query: 91 YDG--EVIDRRYEDVTNKKRLDPYAIGARL 118 DG E I ++ NK + D A L Sbjct: 61 IDGNYEEIKLTILEICNKYKKDKIITEAEL 90 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 6/89 (6%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R++ +R KG++Q E + + LS E G+ P +++ + D+ Sbjct: 1 MEIGERIRQVRMHKGLTQGELVSEI-CSITYLSRIESGKIKPSSSFLKQVSKKLGVDCDF 59 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + G+ + +I + K KKDK Sbjct: 60 LIDGNYEEIKLTIL-----EICNKYKKDK 83 >gi|30264572|ref|NP_846949.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47530039|ref|YP_021388.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187395|ref|YP_030647.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65321870|ref|ZP_00394829.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165871491|ref|ZP_02216138.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635596|ref|ZP_02393908.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641686|ref|ZP_02399931.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170688288|ref|ZP_02879498.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170708374|ref|ZP_02898818.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177653168|ref|ZP_02935455.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567021|ref|ZP_03019937.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196039163|ref|ZP_03106469.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218905729|ref|YP_002453563.1| DNA-binding protein [Bacillus cereus AH820] gi|227817285|ref|YP_002817294.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228929551|ref|ZP_04092570.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948227|ref|ZP_04110511.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124068|ref|ZP_04253260.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] gi|229600477|ref|YP_002868785.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254687007|ref|ZP_05150865.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724570|ref|ZP_05186353.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254736607|ref|ZP_05194313.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741645|ref|ZP_05199332.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254754757|ref|ZP_05206792.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254757589|ref|ZP_05209616.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|301056014|ref|YP_003794225.1| DNA-binding protein [Bacillus anthracis CI] gi|30259230|gb|AAP28435.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47505187|gb|AAT33863.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181322|gb|AAT56698.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164712788|gb|EDR18318.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510393|gb|EDR85794.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529016|gb|EDR91771.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170126749|gb|EDS95632.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170667794|gb|EDT18547.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172081692|gb|EDT66763.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562012|gb|EDV15981.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196029790|gb|EDX68391.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218537131|gb|ACK89529.1| DNA-binding protein [Bacillus cereus AH820] gi|227005980|gb|ACP15723.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228659370|gb|EEL15018.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] gi|228811585|gb|EEM57922.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830130|gb|EEM75748.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229264885|gb|ACQ46522.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300378183|gb|ADK07087.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 190 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 13/122 (10%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 ++EY + T E+ Q VG ++ IR + +E+A + + E G + ++ Sbjct: 1 MKEYEDMQTKEVIQ---QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTL 57 Query: 74 RYALYLRNEYEISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + I + GE + + + Y ++ R Sbjct: 58 AVIWKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRA 117 Query: 124 DK 125 Sbjct: 118 CL 119 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|311278399|ref|YP_003940630.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308747594|gb|ADO47346.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 76 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 24/64 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G +K +R + +Q+ A + V+ E G+ + ++ L + + Sbjct: 10 QFGAHLKKLRLQSGLSQEAFADKCGLDRTYVSGIERGVRNPTLEVIGVLAKGLGMDIKEL 69 Query: 91 YDGE 94 + E Sbjct: 70 FSFE 73 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 GA LK +R G+SQ F G+ + +S E+G P ++ + + + ++ Sbjct: 11 FGAHLKKLRLQSGLSQEAFADKCGLDRTYVSGIERGVRNPTLEVIGVLAKGLGMDIKELF 70 Query: 174 FGD 176 + Sbjct: 71 SFE 73 >gi|301059073|ref|ZP_07200027.1| helix-turn-helix protein [delta proteobacterium NaphS2] gi|300446806|gb|EFK10617.1| helix-turn-helix protein [delta proteobacterium NaphS2] Length = 119 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 31/78 (39%) Query: 22 TPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRN 81 + +VG R+K +RK + T ++++ + + + ENG + + + L Sbjct: 42 SSPKEDIQVNVGERVKRVRKDRDLTLQDISRRTDLDVAFLEQIENGSVAPPLGTVIKLAK 101 Query: 82 EYEISFDWIYDGEVIDRR 99 ++ + G+ Sbjct: 102 ALDLKMGYFISGDEDRPY 119 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%) Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIP 153 E ++ K +G R+K +RKD+ ++ + + + + L E G P Sbjct: 32 EQDFYDSISPSSPKEDIQVNVGERVKRVRKDRDLTLQDISRRTDLDVAFLEQIENGSVAP 91 Query: 154 EIKPARKIKQVTKKHLDWIYFGDEV 178 + K+ + + + GDE Sbjct: 92 PLGTVIKLAKALDLKMGYFISGDED 116 >gi|284991527|ref|YP_003410081.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064772|gb|ADB75710.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 503 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + +G ++D R+ TQ+++A +SAV E G + ++ L E Sbjct: 1 MQRIGMLVRDARRHRGLTQQQLAERLGTSQSAVARIEQGGQNLTLELLGRLSEALE 56 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 IG ++ R+ +G++Q + + LG S ++ EQG ++ ++ + ++ L Sbjct: 1 MQRIGMLVRDARRHRGLTQQQLAERLGTSQSAVARIEQGGQNLTLELLGRLSEALEREL 59 >gi|255531717|ref|YP_003092089.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344701|gb|ACU04027.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 104 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 + +V +++ +RK TQ +MA + A + E GM ++ L + Sbjct: 2 FDINVSQKLRALRKKRGWTQSDMAAQLDISVPAYSKVECGMTELTLGRLRQLAVILGVKV 61 Query: 88 DWIYDGEVIDRRYEDVTNKKRL 109 W+ D + + E+ K++L Sbjct: 62 CWLLDEDEMVLHQENEELKEKL 83 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 36/81 (44%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + +L+++RK +G +Q + L + S E G T + R++ + Sbjct: 1 MFDINVSQKLRALRKKRGWTQSDMAAQLDISVPAYSKVECGMTELTLGRLRQLAVILGVK 60 Query: 169 LDWIYFGDEVIVPKSIKRAKG 189 + W+ DE+++ + + K Sbjct: 61 VCWLLDEDEMVLHQENEELKE 81 >gi|240169634|ref|ZP_04748293.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 471 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 G R++ +R+ TQ +A + S VN EN ++ L L + + + Sbjct: 7 GARLRRLREEQGLTQMALARALDLSTSYVNQLENDQRPITVPVLLALTERFGLPTRYF 64 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 28/64 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + GARL+ +R+++G++Q+ + L + S ++ E + + + + Sbjct: 1 MAKTFAGARLRRLREEQGLTQMALARALDLSTSYVNQLENDQRPITVPVLLALTERFGLP 60 Query: 169 LDWI 172 + Sbjct: 61 TRYF 64 >gi|228994858|ref|ZP_04154653.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764883|gb|EEM13642.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 68 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +K R + TQ+++A V+L E G + S++ L + + D I+ Sbjct: 3 NHVKIARVKADLTQQQLADAVGITRQTVSLIEKGKYNPSLKLCLQICYAVNANLDEIFWI 62 Query: 94 EVIDRR 99 D Sbjct: 63 NQEDFE 68 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +K R ++Q + +G+ T+S E+G+ P +K +I +LD I+ Sbjct: 1 MKNHVKIARVKADLTQQQLADAVGITRQTVSLIEKGKYNPSLKLCLQICYAVNANLDEIF 60 Query: 174 FGDEVIVP 181 + ++ Sbjct: 61 WINQEDFE 68 >gi|312794292|ref|YP_004027215.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181432|gb|ADQ41602.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 144 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 33/71 (46%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G RI ++R+ T+ +++ + +SA++ E G+ +I + + ++ Sbjct: 2 DIGKRIVELREKYGFTRYKLSELSGVSQSALSEIERGIKQPTITTIENICRAFNLTLADF 61 Query: 91 YDGEVIDRRYE 101 + + + E Sbjct: 62 FAEKEPEIPPE 72 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG R+ +R+ G ++ + +L G+ S LS E+G P I I + L Sbjct: 1 MDIGKRIVELREKYGFTRYKLSELSGVSQSALSEIERGIKQPTITTIENICRAFNLTLAD 60 Query: 172 IYFGDEVIVPKSIKR 186 + E +P ++ Sbjct: 61 FFAEKEPEIPPEVRS 75 >gi|256370857|ref|YP_003108681.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256007441|gb|ACU53008.1| transcriptional regulator, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 169 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL 79 VG +++ R+ TQ E+ A +S V+ +E+G S+ L Sbjct: 4 VGEVLREARRRAGLTQAELGRRAGVTQSVVSAYESGARQPSVSMLARL 51 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 L+ R+ G++Q E G+ G+ S +S YE G P + ++ Sbjct: 6 EVLREARRRAGLTQAELGRRAGVTQSVVSAYESGARQPSVSMLARL 51 >gi|258653312|ref|YP_003202468.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556537|gb|ACV79479.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 80 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+ +R T++++A V E G S S+ AL + +E+ + ++ Sbjct: 7 NRLAVLRAERGITRRQLAEAVGVHYQTVGYLERGEYSPSLVLALRIAEYFEMPVEQVFST 66 Query: 94 EVIDRRYEDVT 104 R + + Sbjct: 67 RAFPRIGQTGS 77 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 32/61 (52%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + RL +R ++G+++ + + +G+ T+ E+G P + A +I + + ++ + Sbjct: 4 VLFNRLAVLRAERGITRRQLAEAVGVHYQTVGYLERGEYSPSLVLALRIAEYFEMPVEQV 63 Query: 173 Y 173 + Sbjct: 64 F 64 >gi|229019722|ref|ZP_04176528.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] gi|229025948|ref|ZP_04182338.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228735349|gb|EEL85954.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228741567|gb|EEL91761.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] Length = 190 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|210621012|ref|ZP_03292397.1| hypothetical protein CLOHIR_00340 [Clostridium hiranonis DSM 13275] gi|210154996|gb|EEA86002.1| hypothetical protein CLOHIR_00340 [Clostridium hiranonis DSM 13275] Length = 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDR 98 R+ +QKE+A + A + E G S+ A + + + + + I+ GE + Sbjct: 2 REEKKLSQKELAKILGITQQAYSRIELGKAKPSLSKAKEIADFFNSTIEEIFFGEKFNY 60 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +R++K +SQ E K+LG+ S E G+ P + A++I ++ I+FG++ Sbjct: 1 MREEKKLSQKELAKILGITQQAYSRIELGKAKPSLSKAKEIADFFNSTIEEIFFGEK 57 >gi|124005663|ref|ZP_01690502.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] gi|123988731|gb|EAY28337.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] Length = 255 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 1/84 (1%) Query: 27 QYWKDVGTRIKDIRKA-NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEI 85 + + + +K +R TQ +A SA +E G + + + + Sbjct: 2 KKRRLIAHNLKYLRSEVKKTTQSRVAKHLGISRSAWVDYELGKALPKANVLIKIAEYFGV 61 Query: 86 SFDWIYDGEVIDRRYEDVTNKKRL 109 S D + + + V N + + Sbjct: 62 SIDDLLKVNLKKKTIPSVNNIRLI 85 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 116 ARLKSIR-KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 LK +R + K +Q K LG+ S +YE G+ +P+ KI + +D + Sbjct: 9 HNLKYLRSEVKKTTQSRVAKHLGISRSAWVDYELGKALPKANVLIKIAEYFGVSIDDLLK 68 >gi|54022032|ref|YP_116274.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54013540|dbj|BAD54910.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 202 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G I+D R+A Q+E++ E + +E+G + L +SF + Sbjct: 4 DIGEIIRDRREALGLGQRELSERVGVTERQIGRYESGAQEPAASTCRLLARALHLSFAQL 63 Query: 91 YDGEVIDRRYEDVT 104 + I Sbjct: 64 FGEVPIGLDLSGQW 77 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 22/58 (37%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R+ G+ Q E + +G+ + YE G P R + + ++ Sbjct: 7 EIIRDRREALGLGQRELSERVGVTERQIGRYESGAQEPAASTCRLLARALHLSFAQLF 64 >gi|307285484|ref|ZP_07565623.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306502708|gb|EFM71973.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 231 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 22/65 (33%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 R TQ E+A ++ +EN +I + L YE++ D + + Sbjct: 3 RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDRLLKEDNTMVE 62 Query: 100 YEDVT 104 Sbjct: 63 KLSKD 67 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 36/74 (48%) Query: 122 RKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 R + G++Q E + L + T+SN+E ++ P I ++ + + LD + D +V Sbjct: 3 RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDRLLKEDNTMVE 62 Query: 182 KSIKRAKGNQSSKK 195 K K + Q KK Sbjct: 63 KLSKDIREGQKYKK 76 >gi|299768500|ref|YP_003730526.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1] gi|298698588|gb|ADI89153.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1] Length = 183 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + VGT I+ +R + +Q+++A A + E G + S+ + + Sbjct: 9 QHVGTNIRSLRDERDLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLGVD 65 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 ++S+R ++ +SQ + G+ T++ E G+ + I V F Sbjct: 14 NIRSLRDERDLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLGVD-----FRT 68 Query: 177 EVIVPKSIKRAKGNQSSKKSKKDK 200 V P+ ++A N + + +K++ Sbjct: 69 IVSAPEHKEQALVNALAWQGEKEE 92 >gi|294787896|ref|ZP_06753140.1| transcriptional regulator, XRE family [Simonsiella muelleri ATCC 29453] gi|294484189|gb|EFG31872.1| transcriptional regulator, XRE family [Simonsiella muelleri ATCC 29453] Length = 72 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +++ R+ +Q+E+A +NL EN + ++ + L + + + ++ Sbjct: 4 NQVRQYRQIKGWSQQELAQRIEVARQTINLIENNRYNPTLLLCIKLAHALDTDLNSLF 61 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +++ R+ KG SQ E + + + T++ E R P + K+ L+ + Sbjct: 1 MNANQVRQYRQIKGWSQQELAQRIEVARQTINLIENNRYNPTLLLCIKLAHALDTDLNSL 60 Query: 173 YF-GDE 177 ++ G+E Sbjct: 61 FWQGNE 66 >gi|256544578|ref|ZP_05471950.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] gi|256399467|gb|EEU13072.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] Length = 132 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYAL-YLRNEYEISFDWIYD 92 ++++ +R+ N TQ+E+A ++ +E G R L + S D++ Sbjct: 5 SKLRKLRENKNLTQEELAKLVGVSLKTISRYEMGESKPRYRKIYDKLAEVLDTSHDYLVT 64 Query: 93 GEVI 96 E Sbjct: 65 DEEN 68 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR-KIKQVTKKHLD 170 + ++L+ +R++K ++Q E KL+G+ T+S YE G + P + K+ +V D Sbjct: 1 MSFESKLRKLRENKNLTQEELAKLVGVSLKTISRYEMGESKPRYRKIYDKLAEVLDTSHD 60 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKK 198 ++ +E + ++ G + +K +K+ Sbjct: 61 YLVTDEENFI-LDVREKYGYKGAKDAKE 87 >gi|255292005|dbj|BAH90488.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292866|dbj|BAH89966.1| transcriptional regulator [uncultured bacterium] gi|255292956|dbj|BAH90054.1| XRE family transcriptional regulator [uncultured bacterium] gi|255293226|dbj|BAH90316.1| XRE family transcriptional regulator [uncultured bacterium] Length = 96 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A GA ++++R ++G+SQ L G+ S + E+G +P + KI + + Sbjct: 24 AFGAAVRALRIERGISQESLAHLAGIERSHMGKVERGEHMPTLAVIFKIARALDCSTAVL 83 Query: 173 YFGDEVIV 180 E + Sbjct: 84 MAETENQI 91 Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 21/61 (34%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + G ++ +R +Q+ +A A S + E G ++ + + S Sbjct: 20 DLAQAFGAAVRALRIERGISQESLAHLAGIERSHMGKVERGEHMPTLAVIFKIARALDCS 79 Query: 87 F 87 Sbjct: 80 T 80 >gi|195940391|ref|ZP_03085773.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. EC4024] Length = 175 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 28/80 (35%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + T +K +R+A + ++A ++ + E S ++ + + F Sbjct: 5 QHLATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSA 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 E + D + + Sbjct: 65 FITPESDPQAVFDPQQQAMV 84 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK++R+ +G S + + G+ + L E+ + P + KI + Sbjct: 11 LKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFITPE 69 >gi|163737438|ref|ZP_02144855.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] gi|161388964|gb|EDQ13316.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] Length = 462 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R + TQKE A +N EN S L L E+ + + Sbjct: 9 GAKLREMRLRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSA 68 Query: 93 GEVIDRRYED---VTNKKRLDPYAIGARLK 119 G+ + + + D A L+ Sbjct: 69 GDSERLVSDMREVMADPVFADDTPPMADLR 98 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ +R ++Q EF LG+ L+ E + Q + Sbjct: 6 LYAGAKLREMRLRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTE 65 Query: 172 IYFGDEVIVPKSIKR 186 + GD + ++ Sbjct: 66 LSAGDSERLVSDMRE 80 >gi|163740881|ref|ZP_02148274.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161385872|gb|EDQ10248.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 462 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G +++++R + TQKE A +N EN S L L E+ + + Sbjct: 9 GAKLREMRLRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSA 68 Query: 93 GEVIDRRYED---VTNKKRLDPYAIGARLK 119 G+ + + + D A L+ Sbjct: 69 GDSERLVSDMREVMADPVFADDTPPMADLR 98 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 GA+L+ +R ++Q EF LG+ L+ E + Q + Sbjct: 6 LYAGAKLREMRLRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTE 65 Query: 172 IYFGDEVIVPKSIKR 186 + GD + ++ Sbjct: 66 LSAGDSERLVSDMRE 80 >gi|153853094|ref|ZP_01994503.1| hypothetical protein DORLON_00488 [Dorea longicatena DSM 13814] gi|149753880|gb|EDM63811.1| hypothetical protein DORLON_00488 [Dorea longicatena DSM 13814] gi|295108574|emb|CBL22527.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 266 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++A + +SA+ +E + S + L YE++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDNLKDISHYALIELAKFYEVTVDYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 RL + LKS R D + Sbjct: 65 LGRSQTKNHPNADLADLRLSD-DMIELLKSGRVDNSLLCE 103 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWI 172 I RLK +R ++G++ + + + S L +YE ++ + + +D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDNLKDISHYALIELAKFYEVTVDYL 64 Query: 173 Y 173 Sbjct: 65 L 65 >gi|91224506|ref|ZP_01259768.1| transcriptional regulator, putative [Vibrio alginolyticus 12G01] gi|91190848|gb|EAS77115.1| transcriptional regulator, putative [Vibrio alginolyticus 12G01] Length = 113 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLS----NYEQGRTIPEIKPARKIKQ 163 L + ARLK RK +SQ G +GM +S+ S YE+ R P++K + I Sbjct: 1 MLFNNPLPARLKHARKQANLSQKALGIRIGMDDSSASARMNQYERERHTPDVKTLKLIAD 60 Query: 164 VTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKS 196 L++ + DE+ + K + K+ Sbjct: 61 ELNVPLNYFFCEDEITAELAANLHKLSNDDKQR 93 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESA----VNLFENGMCSTSIRYALYLRNEYEISFDW 89 R+K RK N +QK + I +S+ +N +E + ++ + +E + ++ Sbjct: 9 ARLKHARKQANLSQKALGIRIGMDDSSASARMNQYERERHTPDVKTLKLIADELNVPLNY 68 Query: 90 IYDGEVIDRRYEDVTNKKRLD 110 + + I +K D Sbjct: 69 FFCEDEITAELAANLHKLSND 89 >gi|254974249|ref|ZP_05270721.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255091646|ref|ZP_05321124.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255099748|ref|ZP_05328725.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255305633|ref|ZP_05349805.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313374|ref|ZP_05354957.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516061|ref|ZP_05383737.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649158|ref|ZP_05396060.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260682336|ref|YP_003213621.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260685935|ref|YP_003217068.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306519268|ref|ZP_07405615.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260208499|emb|CBA61121.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260211951|emb|CBE02448.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 72 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 +IK R+ N TQ E+A + ENG + S++ A+ + ++ + + +++ Sbjct: 8 KIKSYREKNLMTQGELAKSVGVRRETIVHLENGRYNPSLKLAMDIAKVFDTTVEELFE 65 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +KS R+ M+Q E K +G+ T+ + E GR P +K A I +V ++ ++ E Sbjct: 9 IKSYREKNLMTQGELAKSVGVRRETIVHLENGRYNPSLKLAMDIAKVFDTTVEELFEFIE 68 Query: 178 V 178 Sbjct: 69 E 69 >gi|307545860|ref|YP_003898339.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307217884|emb|CBV43154.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 179 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G ++ +R+A + ++A A +S ++ E G + ++ L + + F + Sbjct: 12 LGQHLQTLRRARGWSLSQLATAAGIAKSNLSRLEQGDGNPTLDTIWRLAVQLNVPFGTLV 71 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 103 VTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIK 162 +++ +L +G L+++R+ +G S + G+ S LS EQG P + ++ Sbjct: 1 MSDMDKLSLSTLGQHLQTLRRARGWSLSQLATAAGIAKSNLSRLEQGDGNPTLDTIWRLA 60 Query: 163 QVTKKH 168 Sbjct: 61 VQLNVP 66 >gi|262173540|ref|ZP_06041217.1| predicted transcriptional regulator [Vibrio mimicus MB-451] gi|261890898|gb|EEY36885.1| predicted transcriptional regulator [Vibrio mimicus MB-451] Length = 207 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 +G RIKDIR T +E + S ++ EN S + + L + +I + Sbjct: 27 KLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQL 86 Query: 91 YD 92 ++ Sbjct: 87 FE 88 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%) Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 E + ++ ++P +G R+K IR G++ E + G+ STLS E + Sbjct: 5 IYDEYPSITLARESGEQGIEPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQ 64 Query: 151 TIPEIKPARKIKQVTKKHLDWIY 173 P + +K+ + + ++ Sbjct: 65 ISPTFQAMQKLAHGLQIDMPQLF 87 >gi|227534977|ref|ZP_03965026.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187368|gb|EEI67435.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 288 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 50/146 (34%), Gaps = 7/146 (4%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 ++++ + +G+ +K R A + TQ+ +A + ++ ENG + + + L Sbjct: 9 DMKRMAETLGSILKRARMARHLTQQVVADDI-CSQPMLSAIENGRYTPNADLLIALCQRL 67 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTL 143 I + + + N + ++ + + K + Sbjct: 68 GIDLNSLQLADNYAVGTATQFN-QTVEKLCNQHQYTDLLKFLKQDDVISAIQSDTQTQAY 126 Query: 144 SNYEQGRT-----IPEIKPARKIKQV 164 Y T P++ ++I ++ Sbjct: 127 YYYLSVATFQASDSPDLAQIKQILKL 152 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 1/57 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + LK R + ++Q + LS E GR P + Q L+ + Sbjct: 19 SILKRARMARHLTQQVVADDI-CSQPMLSAIENGRYTPNADLLIALCQRLGIDLNSL 74 >gi|260587242|ref|ZP_05853155.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542437|gb|EEX23006.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 121 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K+ R Q+E+ ++L E G S S+ AL + E + + I+ E Sbjct: 58 LKEYRARLGINQQELGKRVGASRQTISLIERGDYSPSVTLALKIAKECNATVEEIFRYEE 117 Query: 96 IDRR 99 + Sbjct: 118 DEDE 121 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK R G++Q E GK +G T+S E+G P + A KI + ++ Sbjct: 52 MPLYNSLKEYRARLGINQQELGKRVGASRQTISLIERGDYSPSVTLALKIAKECNATVEE 111 Query: 172 IYFGDEVIVP 181 I+ +E Sbjct: 112 IFRYEEDEDE 121 >gi|194015499|ref|ZP_03054115.1| putative transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012903|gb|EDW22469.1| putative transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 125 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLE-SAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G + ++R+ + ++ +A S +E G+ + + Y +S D++ Sbjct: 6 GKILTELREKHGWSKSTVAKKLGLKAMSTYANWEYGLRKPDGEMIVKIAELYGVSTDYLL 65 Query: 92 DGEVI 96 G+ Sbjct: 66 TGKDK 70 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMP-NSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 L +R+ G S+ K LG+ ST +N+E G P+ + KI ++ D++ Sbjct: 7 KILTELREKHGWSKSTVAKKLGLKAMSTYANWEYGLRKPDGEMIVKIAELYGVSTDYLLT 66 Query: 175 GDE 177 G + Sbjct: 67 GKD 69 >gi|167767917|ref|ZP_02439970.1| hypothetical protein CLOSS21_02459 [Clostridium sp. SS2/1] gi|167710246|gb|EDS20825.1| hypothetical protein CLOSS21_02459 [Clostridium sp. SS2/1] Length = 146 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM-CSTSIRYALYLRNEYEISF 87 W VG RI+ +RK +Q + A N + + +EN + + + + +S Sbjct: 3 WMTVGERIQLLRKKTGMSQIDFATKINVSKQTLYKYENNLITNIPSDKIEAVADLCHVSP 62 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIG 115 ++ E + + + NKK A Sbjct: 63 AYLMGWEEPEPQSSTILNKKDEKDIAKR 90 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 2/88 (2%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG-RTIPEIKPARKIKQVTKKHL 169 +G R++ +RK GMSQI+F + + TL YE T + + Sbjct: 3 WMTVGERIQLLRKKTGMSQIDFATKINVSKQTLYKYENNLITNIPSDKIEAVADLCHVSP 62 Query: 170 DWIYFGDE-VIVPKSIKRAKGNQSSKKS 196 ++ +E +I K + K Sbjct: 63 AYLMGWEEPEPQSSTILNKKDEKDIAKR 90 >gi|152987325|ref|YP_001348762.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150962483|gb|ABR84508.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 183 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 7/66 (10%), Positives = 21/66 (31%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+ +R T ++A + ++ ++ E S + L ++ + Sbjct: 7 IARRLSTLRSERRLTLAQLAERSAVSKAMISRIERNESSPTASVLGRLAGGLGVTLSELL 66 Query: 92 DGEVID 97 Sbjct: 67 GNTQAP 72 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 8/75 (10%), Positives = 27/75 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RL ++R ++ ++ + + + + +S E+ + P ++ L + Sbjct: 9 RRLSTLRSERRLTLAQLAERSAVSKAMISRIERNESSPTASVLGRLAGGLGVTLSELLGN 68 Query: 176 DEVIVPKSIKRAKGN 190 + +R + Sbjct: 69 TQAPAAPLCRRDRQE 83 >gi|78187738|ref|YP_375781.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167640|gb|ABB24738.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 120 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 31/79 (39%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + +G I+ R +Q+++A A + + + E G + ++ + + ++ Sbjct: 9 RMLGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGERNITLLNYAKIADALNLAMHD 68 Query: 90 IYDGEVIDRRYEDVTNKKR 108 + V T+KK Sbjct: 69 LMKDLVYPPPPPKQTSKKN 87 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 29/80 (36%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 +G ++ R +G SQ + + G+ + + E+G + KI + + Sbjct: 10 MLGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGERNITLLNYAKIADALNLAMHDL 69 Query: 173 YFGDEVIVPKSIKRAKGNQS 192 P + +K N+ Sbjct: 70 MKDLVYPPPPPKQTSKKNRV 89 >gi|52081948|ref|YP_080739.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|319647811|ref|ZP_08002029.1| transcriptional regulator [Bacillus sp. BT1B_CT2] gi|52005159|gb|AAU25101.1| possible transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|317390152|gb|EFV70961.1| transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 132 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 19/139 (13%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISF 87 G R+K++R+ + + ++A+ A +A++ ENG L ++ + Sbjct: 1 MTRFGERLKELREQRSLSVNQLAMYAGVSAAAISRIENGHRGVPKPATIRKLAEALKMPY 60 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYE 147 + + D R E + ++ E G+ + L E Sbjct: 61 EQLMDIAGYMRADEIREQPRG-----------------YVTMQEIAAKHGVEDLWLFKPE 103 Query: 148 QGRTIPEIKPARKIKQVTK 166 + + + ++Q Sbjct: 104 KWDCL-SREDLLNLEQYFH 121 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHL 169 G RLK +R+ + +S + G+ + +S E R +P+ RK+ + K Sbjct: 1 MTRFGERLKELREQRSLSVNQLAMYAGVSAAAISRIENGHRGVPKPATIRKLAEALKMPY 60 Query: 170 DWIY 173 + + Sbjct: 61 EQLM 64 >gi|16126938|ref|NP_421502.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235724|ref|YP_002518161.1| Xre family transcriptional regulator [Caulobacter crescentus NA1000] gi|13424292|gb|AAK24670.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964897|gb|ACL96253.1| transcriptional regulator, Xre family [Caulobacter crescentus NA1000] Length = 76 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG I+ +R+A Q E+A A + ++ ENG + S+R L +S + Sbjct: 12 VGANIRALREARGVPQDELAHVAEIHPTYLSGIENGKRNISLRVLERLAAALVVSEAELV 71 Query: 92 DGEVI 96 + Sbjct: 72 RRKNQ 76 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 106 KKRLD-PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164 ++ +D +GA ++++R+ +G+ Q E + + + LS E G+ ++ ++ Sbjct: 3 RRNMDLRLVVGANIRALREARGVPQDELAHVAEIHPTYLSGIENGKRNISLRVLERLAAA 62 Query: 165 TKKHLDWIY 173 + Sbjct: 63 LVVSEAELV 71 >gi|89100494|ref|ZP_01173355.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89084760|gb|EAR63900.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 71 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 33 GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 G RI+ RK TQ+ A S + E G + + + + + +IS + + Sbjct: 7 GRRIRAFRKLKGFTQESFAKELGVSVSVLGEIERGNRMPADDFIVQVAHVLKISIEELTP 66 Query: 93 GEVID 97 + ID Sbjct: 67 TQEID 71 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 R+++ RK KG +Q F K LG+ S L E+G +P ++ V K ++ + Sbjct: 8 RRIRAFRKLKGFTQESFAKELGVSVSVLGEIERGNRMPADDFIVQVAHVLKISIEEL 64 >gi|114564176|ref|YP_751690.1| XRE family transcriptional regulator [Shewanella frigidimarina NCIMB 400] gi|114335469|gb|ABI72851.1| transcriptional regulator, XRE family with cupin sensor [Shewanella frigidimarina NCIMB 400] Length = 182 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY--------LRNE 82 D+GT +K +RK +Q+E+A A S +++ E S S+ L + Sbjct: 2 DIGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLAGIPMSLVDF 61 Query: 83 YEIS 86 + I Sbjct: 62 FSID 65 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK-IKQVTKKHLDWIYFGD 176 LK++RK KG+SQ E K G+ NST+S E+ P + +K + + L + D Sbjct: 7 LKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLAGI-PMSLVDFFSID 65 Query: 177 EVIVPKSIKRAKGNQ 191 + + +GN+ Sbjct: 66 DGSIGDQKVVYRGNE 80 >gi|332828460|gb|EGK01165.1| hypothetical protein HMPREF9455_00205 [Dysgonomonas gadei ATCC BAA-286] Length = 184 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K++G R+K +R+A + TQ++ A N +E+G +I + + + + Sbjct: 6 KEIGQRLKGLREALDMTQEQFAASCNIPLEEYVKYESGEKDLTISVLKGIASAHNVDVSV 65 Query: 90 I-YDGEVIDRRYEDVTNKKRL 109 + + E Y N K L Sbjct: 66 LMFADEPRMSSYFLTRNGKGL 86 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 30/83 (36%) Query: 107 KRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +D IG RLK +R+ M+Q +F +P YE G I + I Sbjct: 1 MNIDIKEIGQRLKGLREALDMTQEQFAASCNIPLEEYVKYESGEKDLTISVLKGIASAHN 60 Query: 167 KHLDWIYFGDEVIVPKSIKRAKG 189 + + F DE + G Sbjct: 61 VDVSVLMFADEPRMSSYFLTRNG 83 >gi|331269964|ref|YP_004396456.1| helix-turn-helix domain-containing protein [Clostridium botulinum BKT015925] gi|329126514|gb|AEB76459.1| helix-turn-helix domain protein [Clostridium botulinum BKT015925] Length = 184 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 34/94 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ +G+ +K IR N + ++ ++ + E G + ++ + + Sbjct: 1 MKELTSIIGSNLKTIRNQKNMSLDNVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 +SF D + + + + +L Sbjct: 61 VSFSSFIDDSNENLKIISQDKIDPIIEDSNRMKL 94 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 + LK+IR K MS KL G+ + L E+G + P + KI K Sbjct: 10 SNLKTIRNQKNMSLDNVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVSFSSFI-D 68 Query: 176 DEVIVPKSIKRAKGNQSSKKSKK 198 D K I + K + + S + Sbjct: 69 DSNENLKIISQDKIDPIIEDSNR 91 >gi|295095877|emb|CBK84967.1| Predicted transcriptional regulators [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 175 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 28/80 (35%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 + + T +K +R+A + ++A ++ + E S ++ + + F Sbjct: 5 QHLATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSA 64 Query: 90 IYDGEVIDRRYEDVTNKKRL 109 E + D + + Sbjct: 65 FITPESEPQAVFDPQQQAMV 84 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 LK++R+ +G S + + G+ + L E+ + P + KI + Sbjct: 11 LKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFITPE 69 >gi|311742480|ref|ZP_07716289.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Aeromicrobium marinum DSM 15272] gi|311314108|gb|EFQ84016.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Aeromicrobium marinum DSM 15272] Length = 511 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNE 82 Y +GT I+D R+ + TQ ++A + +SAVN E G + ++ + Sbjct: 2 STSDDYLSRIGTLIRDARQHSGLTQAQLATELSTSQSAVNRIEKGQQNLTLDMLARIGKA 61 Query: 83 YE 84 + Sbjct: 62 LD 63 Score = 43.8 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 21/49 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 ++ R+ G++Q + L S ++ E+G+ + +I + Sbjct: 15 IRDARQHSGLTQAQLATELSTSQSAVNRIEKGQQNLTLDMLARIGKALD 63 >gi|237748842|ref|ZP_04579322.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229380204|gb|EEO30295.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 99 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G IK R +Q ++A A S ++L E+ ++ + + + + Sbjct: 2 DIGNAIKTCRIRRGYSQTKLAELAECSVSYLSLIEHNQRDITLSTLQKICHALHVPIGIL 61 Query: 91 YD 92 Sbjct: 62 LF 63 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +K+ R +G SQ + +L S LS E + + +KI + Sbjct: 1 MDIGNAIKTCRIRRGYSQTKLAELAECSVSYLSLIEHNQRDITLSTLQKICHALHVPIGI 60 Query: 172 IYF 174 + F Sbjct: 61 LLF 63 >gi|257791632|ref|YP_003182238.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317487901|ref|ZP_07946493.1| hypothetical protein HMPREF1023_00191 [Eggerthella sp. 1_3_56FAA] gi|325830585|ref|ZP_08164006.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475529|gb|ACV55849.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316913027|gb|EFV34544.1| hypothetical protein HMPREF1023_00191 [Eggerthella sp. 1_3_56FAA] gi|325487331|gb|EGC89773.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 68 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++IRKA Q+++A+ ++ E G + SI A + + + + ++ Sbjct: 3 NRLEEIRKARGIKQEDLALELGVSRQTISSLEKGRYNPSILLAFKIARRFGLQIEDVFIY 62 Query: 94 EVID 97 + D Sbjct: 63 QEED 66 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK +G+ Q + LG+ T+S+ E+GR P I A KI + ++ ++ Sbjct: 1 MENRLEEIRKARGIKQEDLALELGVSRQTISSLEKGRYNPSILLAFKIARRFGLQIEDVF 60 Query: 174 FGDEVIVP 181 E Sbjct: 61 IYQEEDHE 68 >gi|257791706|ref|YP_003182312.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475603|gb|ACV55923.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 73 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 26 RQYWKDVGTRIKDIRKAN-NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 R K VG R+K +RK +Q++ A + E G SI + + Sbjct: 4 RFVQKQVGVRLKALRKEKTGLSQEKFAYSIGVDRAYYAHIEQGRHGVSIVMLKKIADGMG 63 Query: 85 ISFDWIYDG 93 I + ++ G Sbjct: 64 IGLEEMFKG 72 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 118 LKSIRKDK-GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK++RK+K G+SQ +F +G+ + ++ EQGR I +KI L+ ++ G Sbjct: 14 LKALRKEKTGLSQEKFAYSIGVDRAYYAHIEQGRHGVSIVMLKKIADGMGIGLEEMFKG 72 >gi|317482605|ref|ZP_07941620.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916027|gb|EFV37434.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 71 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R +GM Q + L+ + T+ EQG+ P ++ A + +V ++ ++ Sbjct: 1 MKTSLKLHRLQRGMKQSDLADLVNVRRETIGRLEQGQYCPSLRLAMDLARVFGTTVEDLF 60 Query: 174 FGDEVIVPKS 183 D+ +S Sbjct: 61 SFDDEYKSES 70 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +K R Q ++A N + E G S+R A+ L + + + ++ Sbjct: 5 LKLHRLQRGMKQSDLADLVNVRRETIGRLEQGQYCPSLRLAMDLARVFGTTVEDLF 60 >gi|210615547|ref|ZP_03290645.1| hypothetical protein CLONEX_02863 [Clostridium nexile DSM 1787] gi|210150214|gb|EEA81223.1| hypothetical protein CLONEX_02863 [Clostridium nexile DSM 1787] Length = 74 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 Y+ +++ R K MSQ E L+G+ T+ E+ R P + A I +V ++ Sbjct: 6 YSFDSKIHIYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVAIED 65 Query: 172 IYFGDE 177 ++ +E Sbjct: 66 LFDFEE 71 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 28/65 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++I R +Q+E+A + E + S+ A + ++++ + ++D Sbjct: 10 SKIHIYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVAIEDLFDF 69 Query: 94 EVIDR 98 E ++ Sbjct: 70 EEAEK 74 >gi|150402446|ref|YP_001329740.1| cupin 2 domain-containing protein [Methanococcus maripaludis C7] gi|150033476|gb|ABR65589.1| Cupin 2 conserved barrel domain protein [Methanococcus maripaludis C7] Length = 184 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 36/80 (45%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 +++ K++ +R++++R+ + + +EMA N +E G C + +++E Sbjct: 1 MKEKMKEIASRVRELRELSEISIEEMADHLNVSPEIYQHYEEGTCDIPASVLYEIAHKFE 60 Query: 85 ISFDWIYDGEVIDRRYEDVT 104 + + GE VT Sbjct: 61 VDMGLLLTGEETRMHIFTVT 80 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 I +R++ +R+ +S E L + +YE+G +I + + Sbjct: 5 MKEIASRVRELRELSEISIEEMADHLNVSPEIYQHYEEGTCDIPASVLYEIAHKFEVDMG 64 Query: 171 WIYFGDEVIVPKSIKRAKGNQSSKKSKKDKKSSN 204 + G+E + KG S + +K K N Sbjct: 65 LLLTGEETRMHIFTVTRKGKGVSVERRKQYKYEN 98 >gi|120435188|ref|YP_860874.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577338|emb|CAL65807.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 64 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K +R N TQ ++A +N E G S+ A +++ + I+D Sbjct: 3 NRLKVLRAEYNMTQAQLADETGVSRQTINAIEKGKFDPSLPLAFRFSRLFKLKIEEIFDD 62 Query: 94 EV 95 E Sbjct: 63 EE 64 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R + M+Q + G+ T++ E+G+ P + A + ++ K ++ I+ Sbjct: 1 MKNRLKVLRAEYNMTQAQLADETGVSRQTINAIEKGKFDPSLPLAFRFSRLFKLKIEEIF 60 Query: 174 FGDE 177 +E Sbjct: 61 DDEE 64 >gi|167039361|ref|YP_001662346.1| XRE family transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914000|ref|ZP_07131317.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307725315|ref|YP_003905066.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X513] gi|166853601|gb|ABY92010.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X514] gi|300890685|gb|EFK85830.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307582376|gb|ADN55775.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513] Length = 84 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK +R + Q + +++G+ S EQG P + A+KI + ++ Sbjct: 1 MVERKKLKELRIKNNLLQKDVAEVIGITPSYYGMIEQGVRTPTLPVAKKIAEFFNSTIEE 60 Query: 172 IYFGDEVIVPKSIKRAKGNQSSKK 195 ++F D + S KR + +K Sbjct: 61 LFFEDVNNIMLSDKRVINKKLIRK 84 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 31/64 (48%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K++R NN QK++A S + E G+ + ++ A + + + + ++ Sbjct: 5 KKLKELRIKNNLLQKDVAEVIGITPSYYGMIEQGVRTPTLPVAKKIAEFFNSTIEELFFE 64 Query: 94 EVID 97 +V + Sbjct: 65 DVNN 68 >gi|116695951|ref|YP_841527.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530450|emb|CAJ96797.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 196 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 30/86 (34%) Query: 15 QEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIR 74 E + + +G +++ R T ++A A ES ++ E G+ + S Sbjct: 4 TEQPTPEAADSKSATLTLGVKLRHARLVAGYTLLQLAGKAGCSESLISKIERGLATPSFT 63 Query: 75 YALYLRNEYEISFDWIYDGEVIDRRY 100 L + + + E ++ Sbjct: 64 TLHRLAVALDTNIGALTSDEEPNQSP 89 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 25/71 (35%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 L+ R G + ++ G S +S E+G P ++ ++ + +E Sbjct: 25 LRHARLVAGYTLLQLAGKAGCSESLISKIERGLATPSFTTLHRLAVALDTNIGALTSDEE 84 Query: 178 VIVPKSIKRAK 188 ++ + Sbjct: 85 PNQSPILRHGE 95 >gi|121582747|ref|YP_973189.1| XRE family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120596009|gb|ABM39447.1| transcriptional regulator, XRE family [Polaromonas naphthalenivorans CJ2] Length = 98 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A GA ++++R ++G++Q L G+ S + E+G +P + KI + + Sbjct: 24 AFGAAVRALRTEQGVAQETLAHLAGIERSHMGKIERGEHMPTLAIILKIARALGCSSADL 83 Query: 173 YFGDEVIVPKS 183 E + S Sbjct: 84 MTATESRLTAS 94 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 24/81 (29%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + G ++ +R Q+ +A A S + E G ++ L + Sbjct: 18 EAEPAQAFGAAVRALRTEQGVAQETLAHLAGIERSHMGKIERGEHMPTLAIILKIARALG 77 Query: 85 ISFDWIYDGEVIDRRYEDVTN 105 S + + + Sbjct: 78 CSSADLMTATESRLTASEPEH 98 >gi|332363975|gb|EGJ41754.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 225 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 3/92 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N TQ + + +ENG+ + L ++ ++ D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 94 EV--IDRRYEDVTNKKRLDPYAIGARLKSIRK 123 +KK +D A L+ RK Sbjct: 65 TSALYTYPLLTPPHKKEVDKLASR-LLERQRK 95 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R + ++Q + LG+ T S +E G P K R++ K ++ Sbjct: 1 MFSHEKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENY 60 Query: 172 IY 173 Sbjct: 61 FV 62 >gi|323463311|gb|ADX75464.1| transcriptional regulator, Cro/CI family [Staphylococcus pseudintermedius ED99] Length = 67 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RLK +R G +Q + K G+ T+S E+ P I A KI ++ + ++ ++ Sbjct: 1 MKNRLKELRARDGYNQTQLAKKAGISRQTVSLIERNGFTPSILTAIKIARIFGEPVENVF 60 Query: 174 FGDEV 178 +E Sbjct: 61 IIEEE 65 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+K++R + Q ++A A V+L E + SI A+ + + + ++ Sbjct: 3 NRLKELRARDGYNQTQLAKKAGISRQTVSLIERNGFTPSILTAIKIARIFGEPVENVFII 62 Query: 94 EVID 97 E D Sbjct: 63 EEED 66 >gi|322436743|ref|YP_004218955.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321164470|gb|ADW70175.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 73 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 G I+ +R+ +Q+E+A A + V E G + + + L + ++ Sbjct: 10 FGKSIRTLREERGYSQEELAERAGLHRNYVGGIERGERNVGLENIVKLAKALSVKSRDLF 69 Query: 92 D 92 + Sbjct: 70 E 70 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 29/62 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + G ++++R+++G SQ E + G+ + + E+G ++ K+ + Sbjct: 8 FLFGKSIRTLREERGYSQEELAERAGLHRNYVGGIERGERNVGLENIVKLAKALSVKSRD 67 Query: 172 IY 173 ++ Sbjct: 68 LF 69 >gi|325107542|ref|YP_004268610.1| hypothetical protein Plabr_0967 [Planctomyces brasiliensis DSM 5305] gi|324967810|gb|ADY58588.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM 5305] Length = 116 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS----TSIRYALYLRNEYEIS 86 G R++++RK TQ+++A+ + S ++ EN + S + L L + Sbjct: 2 QFGERVRELRKQRGLTQQKLAVLLDVSLSYISKVENERLNAGDYPSEVFVLKLAKALDAD 61 Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPY 112 D + ++R D + Sbjct: 62 EDELLLLTDRVPAAIRQRIRERPDAF 87 Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI----PEIKPARKIKQVTKK 167 G R++ +RK +G++Q + LL + S +S E R P K+ + Sbjct: 1 MQFGERVRELRKQRGLTQQKLAVLLDVSLSYISKVENERLNAGDYPSEVFVLKLAKALDA 60 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSS 193 D + + + +R + + Sbjct: 61 DEDELLLLTDRVPAAIRQRIRERPDA 86 >gi|291525427|emb|CBK91014.1| Helix-turn-helix [Eubacterium rectale DSM 17629] Length = 112 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 33/81 (40%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 ++ K +G I+ R NN TQ++++ A+ + E G S+ + N +I Sbjct: 5 EFIKHIGKIIRFYRLKNNLTQEQLSEYADCSCGFIGQIERGESKISLSVLSKIINTLKID 64 Query: 87 FDWIYDGEVIDRRYEDVTNKK 107 + ++ G + + Sbjct: 65 ANELFWGTDTHTSESQQLDNQ 85 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 IG ++ R ++Q + + + E+G + + KI K + + Sbjct: 9 HIGKIIRFYRLKNNLTQEQLSEYADCSCGFIGQIERGESKISLSVLSKIINTLKIDANEL 68 Query: 173 YFGDEVIVPKSIK-RAKGNQSSKKSKKDKKS 202 ++G + +S + + +K+ DKK Sbjct: 69 FWGTDTHTSESQQLDNQIALYAKQLSIDKKH 99 >gi|254975050|ref|ZP_05271522.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092439|ref|ZP_05321917.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100520|ref|ZP_05329497.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306462|ref|ZP_05350633.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314177|ref|ZP_05355760.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516856|ref|ZP_05384532.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649957|ref|ZP_05396859.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|306520039|ref|ZP_07406386.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|328887610|emb|CAJ68359.2| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 194 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 35/90 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KD+G +IK +R T K+M+ N ++ E G+ S + + + ++ Sbjct: 2 NKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVELT 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + +R + +K + + Sbjct: 62 YFFMKPKEHKRAVLRSYEKEVFDVENSTFI 91 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K +R K M+ + + + LS E+G T KI V L + + Sbjct: 7 AKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVELTYFF-- 64 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + PK KRA K+ Sbjct: 65 ---MKPKEHKRAVLRSYEKE 81 >gi|228942307|ref|ZP_04104846.1| hypothetical protein bthur0008_49370 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975236|ref|ZP_04135794.1| hypothetical protein bthur0003_49830 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981874|ref|ZP_04142169.1| hypothetical protein bthur0002_50330 [Bacillus thuringiensis Bt407] gi|228777986|gb|EEM26258.1| hypothetical protein bthur0002_50330 [Bacillus thuringiensis Bt407] gi|228784515|gb|EEM32536.1| hypothetical protein bthur0003_49830 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817351|gb|EEM63437.1| hypothetical protein bthur0008_49370 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942963|gb|AEA18859.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 65 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + ++K +RK ++Q+E K + + T+ E P ++ + KI + ++ Sbjct: 1 MGVKNKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGLKVEE 60 Query: 172 IYFGD 176 I+ + Sbjct: 61 IFTLE 65 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +IK++RK N+ TQ EMA + EN + S+ +L + + + + I+ Sbjct: 5 NKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGLKVEEIFTL 64 Query: 94 E 94 E Sbjct: 65 E 65 >gi|228988753|ref|ZP_04148831.1| transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770973|gb|EEM19461.1| transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 122 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 RIK++RK N T K++A N S ++ E G + SI + Y ++ ++ + Sbjct: 3 NRIKEVRKKNGDTLKDLAKKINYDYSNLSKIERGFYTPSIELLKRISVVYNVNLQYLIE 61 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + R+K +RK G + + K + S LS E+G P I+ ++I V +L ++ Sbjct: 1 MKNRIKEVRKKNGDTLKDLAKKINYDYSNLSKIERGFYTPSIELLKRISVVYNVNLQYLI 60 >gi|225375542|ref|ZP_03752763.1| hypothetical protein ROSEINA2194_01167 [Roseburia inulinivorans DSM 16841] gi|225212631|gb|EEG94985.1| hypothetical protein ROSEINA2194_01167 [Roseburia inulinivorans DSM 16841] Length = 266 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFEN-GMCSTSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++A + +SA+ +E + S + L YE++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDNLKDISHYALIELAKFYEVTVDYL 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 RL + LKS R D + Sbjct: 65 LGRSQTKNHPNADLADLRLSD-DMIELLKSGRVDNSLLCE 103 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWI 172 I RLK +R ++G++ + + + S L +YE ++ + + +D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDNLKDISHYALIELAKFYEVTVDYL 64 Query: 173 Y 173 Sbjct: 65 L 65 >gi|226327970|ref|ZP_03803488.1| hypothetical protein PROPEN_01852 [Proteus penneri ATCC 35198] gi|225203674|gb|EEG86028.1| hypothetical protein PROPEN_01852 [Proteus penneri ATCC 35198] Length = 100 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 34/87 (39%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG +IK +RK+ T ++A + E + +E G+ I + + ++ + Sbjct: 11 VGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLEVLGVNIGSFF 70 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARL 118 + E N++ + + L Sbjct: 71 EEVTGGMAQETELNEQHIPAHFDSKAL 97 Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 YA+G ++KS+RK +G + + K + + L YE+G +I K+ +V ++ Sbjct: 9 YAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLEVLGVNIGS 68 Query: 172 IY 173 + Sbjct: 69 FF 70 >gi|239916810|ref|YP_002956368.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|281414729|ref|ZP_06246471.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|289706005|ref|ZP_06502378.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] gi|239838017|gb|ACS29814.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|289557207|gb|EFD50525.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] Length = 67 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + + R G SQ LG+ T+ + E+GR P + A ++ V + ++ ++ Sbjct: 1 MENTIPDERARLGWSQQRLADELGVSRQTVISLEKGRYDPSLPLAFRLAAVFGRRIEDLF 60 Query: 174 FGD 176 D Sbjct: 61 TPD 63 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 18/57 (31%) Query: 40 RKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVI 96 R +Q+ +A V E G S+ A L + + ++ + Sbjct: 9 RARLGWSQQRLADELGVSRQTVISLEKGRYDPSLPLAFRLAAVFGRRIEDLFTPDGN 65 >gi|153932712|ref|YP_001382933.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936176|ref|YP_001386483.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|152928756|gb|ABS34256.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932090|gb|ABS37589.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 63 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +K R+ M QI+ + +G+ T+ + E GR P +K A I +V ++ ++ Sbjct: 1 MTNIKEYREKTNMKQIDLAEKIGVRRETIVHLESGRYNPSLKMAMDIAKVFNATVEELFK 60 Query: 175 GDE 177 ++ Sbjct: 61 FED 63 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGE 94 IK+ R+ N Q ++A + E+G + S++ A+ + + + + ++ E Sbjct: 3 NIKEYREKTNMKQIDLAEKIGVRRETIVHLESGRYNPSLKMAMDIAKVFNATVEELFKFE 62 Query: 95 V 95 Sbjct: 63 D 63 >gi|319425493|gb|ADV53567.1| Cupin 2 conserved barrel domain protein [Shewanella putrefaciens 200] Length = 182 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY--------LRNE 82 D+G +K +RK +Q+E+A A S +++ E S S+ L + Sbjct: 2 DIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDF 61 Query: 83 YEI 85 + I Sbjct: 62 FSI 64 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 IGA LK++RK KG+SQ E K G+ NST+S E+ P + +K Sbjct: 1 MDIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKK 49 >gi|148270580|ref|YP_001245040.1| helix-turn-helix domain-containing protein [Thermotoga petrophila RKU-1] gi|281412888|ref|YP_003346967.1| XRE family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|147736124|gb|ABQ47464.1| helix-turn-helix domain protein [Thermotoga petrophila RKU-1] gi|281373991|gb|ADA67553.1| transcriptional regulator, XRE family [Thermotoga naphthophila RKU-10] Length = 127 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%) Query: 12 KSLQEYTLIITPEIR---QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 + +E + E + + +G ++ RK +N TQK++A +S V+ E G Sbjct: 12 ELFEEMGFHHSEEEKVFIEVMSQIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGE 71 Query: 69 CSTSIRYALYLRNEYE 84 + SIR + Sbjct: 72 KNISIRVLAKIVAALG 87 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 +L + RK ++Q + K LG+ S +S E G I+ KI Sbjct: 38 QLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 87 >gi|160880556|ref|YP_001559524.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429222|gb|ABX42785.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 66 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R+++IRK + Q+E+A + ENG + SI A + + + + I+ Sbjct: 3 NRLEEIRKLHGIKQEELANILEVSRQTIGSLENGRYNPSILLAFKIARYFNMRIEDIFIY 62 Query: 94 EVI 96 E Sbjct: 63 EDE 65 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + RL+ IRK G+ Q E +L + T+ + E GR P I A KI + ++ I+ Sbjct: 1 MKNRLEEIRKLHGIKQEELANILEVSRQTIGSLENGRYNPSILLAFKIARYFNMRIEDIF 60 Query: 174 FGDEVI 179 ++ + Sbjct: 61 IYEDEV 66 >gi|42783677|ref|NP_980924.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206975999|ref|ZP_03236909.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217961988|ref|YP_002340558.1| DNA-binding protein [Bacillus cereus AH187] gi|228987754|ref|ZP_04147865.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229141235|ref|ZP_04269774.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST26] gi|229158112|ref|ZP_04286181.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] gi|229198653|ref|ZP_04325354.1| Transcriptional regulator, Xre [Bacillus cereus m1293] gi|42739606|gb|AAS43532.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206745751|gb|EDZ57148.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066549|gb|ACJ80799.1| DNA-binding protein [Bacillus cereus AH187] gi|228584812|gb|EEK42929.1| Transcriptional regulator, Xre [Bacillus cereus m1293] gi|228625341|gb|EEK82099.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] gi|228642276|gb|EEK98568.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST26] gi|228772028|gb|EEM20483.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324328397|gb|ADY23657.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 190 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|332974608|gb|EGK11526.1| LexA family repressor/S24 family protease [Psychrobacter sp. 1501(2011)] Length = 212 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 43/136 (31%), Gaps = 12/136 (8%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 + +G R+ ++R++ ++ + ++A+ +E + L + S Sbjct: 1 MQTLGQRLFNLRRSKKLSRDALGAKIGVSKTAIKNWEEDSNFPKHEFIDGLSKVFGCSIG 60 Query: 89 WIYDG--EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGM------PN 140 ++ DG + + + + N +R+ + + + P+ Sbjct: 61 YLVDGIPDGDNFKILPMDNVRRVPVLNYV----QAGEFCEYFDDAIADMFEVIIGDYPPH 116 Query: 141 STLSNYEQGRTIPEIK 156 E P+ Sbjct: 117 VHWVIIEGLSMTPDFN 132 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 +G RL ++R+ K +S+ G +G+ + + N+E+ P+ + + +V + Sbjct: 1 MQTLGQRLFNLRRSKKLSRDALGAKIGVSKTAIKNWEEDSNFPKHEFIDGLSKVFGCSIG 60 Query: 171 WIYFG 175 ++ G Sbjct: 61 YLVDG 65 >gi|289644398|ref|ZP_06476479.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505791|gb|EFD26809.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 261 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 VG ++D R+ +Q E++ A ++ E G + + L + Sbjct: 11 VGQLLRDWRERRRLSQLELSNQAEISTRHLSFVETGRSRPTPEMIIRLSEHLNVPL 66 >gi|288353334|ref|YP_003422632.1| protein of unknown function DUF955 [Zymomonas mobilis subsp. mobilis ZM4] gi|285026735|gb|ADC33829.1| protein of unknown function DUF955 [Zymomonas mobilis subsp. mobilis ZM4] Length = 401 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 40/126 (31%), Gaps = 12/126 (9%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+KD RK +Q+E+ A++ FE G + R + +++ + ++ Sbjct: 24 IPERLKDARKFMRLSQEELGKEIGVSRQAISQFERGDRNPDARTLVGIQSVLKQPIEFFI 83 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 E + ++ ++ R+ F + + Sbjct: 84 TQEFPEVGKSSPKFYRK----FGSNTIRR-REACDTYAEWF-------VQIVKQIDNFIN 131 Query: 152 IPEIKP 157 P + Sbjct: 132 YPPVNI 137 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 4/92 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + I RLK RK +SQ E GK +G+ +S +E+G P+ + I+ V K+ +++ Sbjct: 22 FLIPERLKDARKFMRLSQEELGKEIGVSRQAISQFERGDRNPDARTLVGIQSVLKQPIEF 81 Query: 172 IYFGD----EVIVPKSIKRAKGNQSSKKSKKD 199 + PK ++ N ++ D Sbjct: 82 FITQEFPEVGKSSPKFYRKFGSNTIRRREACD 113 >gi|227499690|ref|ZP_03929793.1| hypothetical protein HMPREF0077_0428 [Anaerococcus tetradius ATCC 35098] gi|227218287|gb|EEI83546.1| hypothetical protein HMPREF0077_0428 [Anaerococcus tetradius ATCC 35098] Length = 74 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 I+ +R N +QKE+A + ++ EN S+ A + + +++ D I+ Sbjct: 7 NNIRVLRAMKNVSQKELAKAVGVSQQTISTAEN-TSRMSLTTAKKIADYFDVKIDDIFLN 65 Query: 94 EVIDRRYED 102 + + Sbjct: 66 KNTILNVNN 74 Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ +R K +SQ E K +G+ T+S E + + A+KI +D I+ Sbjct: 7 NNIRVLRAMKNVSQKELAKAVGVSQQTISTAENTSRM-SLTTAKKIADYFDVKIDDIFLN 65 Query: 176 DEVIV 180 I+ Sbjct: 66 KNTIL 70 >gi|225866477|ref|YP_002751855.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225788695|gb|ACO28912.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 190 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDAGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|255655505|ref|ZP_05400914.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] Length = 194 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 35/90 (38%) Query: 29 WKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 KD+G +IK +R T K+M+ N ++ E G+ S + + + ++ Sbjct: 2 NKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVELT 61 Query: 89 WIYDGEVIDRRYEDVTNKKRLDPYAIGARL 118 + + +R + +K + + Sbjct: 62 YFFMKPKEHKRAVLRSYEKEVFDVENSTFI 91 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 A++K +R K M+ + + + LS E+G T KI V L + + Sbjct: 7 AKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVELTYFF-- 64 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + PK KRA K+ Sbjct: 65 ---MKPKEHKRAVLRSYEKE 81 >gi|167647540|ref|YP_001685203.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167349970|gb|ABZ72705.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 140 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG R++ RK +Q ++A + +E G S + + + Sbjct: 17 VGARLRIRRKVLGLSQTQLADALGITFQQIQKYERGANRISASKLYEAARLLQSPVAYFF 76 Query: 92 DG 93 DG Sbjct: 77 DG 78 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +GARL+ RK G+SQ + LG+ + YE+G + ++ + + + Sbjct: 15 LYVGARLRIRRKVLGLSQTQLADALGITFQQIQKYERGANRISASKLYEAARLLQSPVAY 74 Query: 172 IYFG 175 + G Sbjct: 75 FFDG 78 >gi|126173345|ref|YP_001049494.1| cupin 2 domain-containing protein [Shewanella baltica OS155] gi|152999697|ref|YP_001365378.1| cupin 2 domain-containing protein [Shewanella baltica OS185] gi|160874315|ref|YP_001553631.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|217974352|ref|YP_002359103.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|304409280|ref|ZP_07390900.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS183] gi|307303638|ref|ZP_07583391.1| Cupin 2 conserved barrel domain protein [Shewanella baltica BA175] gi|125996550|gb|ABN60625.1| transcriptional regulator, XRE family with cupin sensor [Shewanella baltica OS155] gi|151364315|gb|ABS07315.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS185] gi|160859837|gb|ABX48371.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|217499487|gb|ACK47680.1| transcriptional regulator, XRE family [Shewanella baltica OS223] gi|304351798|gb|EFM16196.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS183] gi|306912536|gb|EFN42959.1| Cupin 2 conserved barrel domain protein [Shewanella baltica BA175] gi|315266550|gb|ADT93403.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS678] Length = 182 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALY--------LRNE 82 D+G +K +RK +Q+E+A A S +++ E S S+ L + Sbjct: 2 DIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDF 61 Query: 83 YEI 85 + I Sbjct: 62 FSI 64 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 IGA LK++RK KG+SQ E K G+ NST+S E+ P + +K Sbjct: 1 MDIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKK 49 >gi|47570141|ref|ZP_00240798.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47553205|gb|EAL11599.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 185 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|326803357|ref|YP_004321175.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651652|gb|AEA01835.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 73 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K IRK +Q+ +A ++++ E G + + + AL L + F+ ++ Sbjct: 7 LHNRLKTIRKEKGLSQQALADMIGVSRNSISSIETGQFNPTAKLALILCIALDCQFENMF 66 Query: 92 DGEVI 96 E Sbjct: 67 YFEGN 71 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 RLK+IRK+KG+SQ ++G+ +++S+ E G+ P K A + + +++ Sbjct: 8 HNRLKTIRKEKGLSQQALADMIGVSRNSISSIETGQFNPTAKLALILCIALDCQFENMFY 67 Query: 175 GD 176 + Sbjct: 68 FE 69 >gi|324995252|gb|EGC27164.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] Length = 225 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N TQ + + +ENG+ + L ++ ++ D Sbjct: 5 EKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 94 EV--IDRRYEDVTNKKRLDPYAIGARLKSIRK 123 ++KK +D A L+ RK Sbjct: 65 TSTLYTYPLLTPSHKKEVDQLAS-QLLERQRK 95 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R + ++Q + LG+ T S +E G P K R++ K ++ Sbjct: 1 MFSHEKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENY 60 Query: 172 IY 173 Sbjct: 61 FV 62 >gi|332654831|ref|ZP_08420573.1| conserved domain protein [Ruminococcaceae bacterium D16] gi|332516174|gb|EGJ45782.1| conserved domain protein [Ruminococcaceae bacterium D16] Length = 68 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 R+K R N +Q ++A ++ E G + + + AL L + F+ ++ Sbjct: 9 NRLKVARAEKNLSQGDLAKLVGVSRQTISSIETGQFNPTAKLALVLCIALDKKFEDLFY 67 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D + RLK R +K +SQ + KL+G+ T+S+ E G+ P K A + K Sbjct: 3 DQLVLKNRLKVARAEKNLSQGDLAKLVGVSRQTISSIETGQFNPTAKLALVLCIALDKKF 62 Query: 170 DWIYFG 175 + +++ Sbjct: 63 EDLFYF 68 >gi|322434064|ref|YP_004216276.1| Cupin 2 conserved barrel domain protein [Acidobacterium sp. MP5ACTX9] gi|321161791|gb|ADW67496.1| Cupin 2 conserved barrel domain protein [Acidobacterium sp. MP5ACTX9] Length = 267 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 K +G RIK +R + E+ S ++ E G ++R + + ++ Sbjct: 43 KRIGERIKYLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLARIAMVFSKDLNF 102 Query: 90 IYDGEVIDRRY 100 ++ E Sbjct: 103 FFEPEPQTLFR 113 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%) Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT 151 + + + + + IG R+K +R K M +E G+ G+ S LS E GR Sbjct: 23 QADNSAIQVDGEAAESFIAEKRIGERIKYLRLKKSMGLVELGRHTGLSASFLSQLETGRV 82 Query: 152 IPEIKPARKIKQVTKKHLDWIYFGD 176 +P ++ +I V K L++ + + Sbjct: 83 VPTLRNLARIAMVFSKDLNFFFEPE 107 >gi|229106667|ref|ZP_04236903.1| transcriptional regulator [Bacillus cereus Rock3-28] gi|228676778|gb|EEL31388.1| transcriptional regulator [Bacillus cereus Rock3-28] Length = 171 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKR 186 MSQ + + + + ++SN+E R P+I + + LD + GD I+ + +++ Sbjct: 1 MSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDNLVKGDVKIMKEELQK 60 Query: 187 A 187 + Sbjct: 61 S 61 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 45 KTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVT 104 +Q+++A + +++ +EN I L + + +S D + G+V + E Sbjct: 1 MSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDNLVKGDVKIMKEELQK 60 Query: 105 N 105 + Sbjct: 61 S 61 >gi|227549722|ref|ZP_03979771.1| MerR family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078218|gb|EEI16181.1| MerR family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 467 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 34/92 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R+ N +Q +A S VN E+ + ++ + + + + Sbjct: 6 VGSRLRQLRRERNLSQASLAATLELSASYVNQIEHDVRPLTVPVLKRITEAFGVDATFFS 65 Query: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + E + A L+ + + Sbjct: 66 RDDDSRLLAELKDVVADQELGAANVELQELSE 97 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 34/84 (40%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+RL+ +R+++ +SQ L + S ++ E + ++I + Sbjct: 1 MSKTYVGSRLRQLRRERNLSQASLAATLELSASYVNQIEHDVRPLTVPVLKRITEAFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 + D+ + +K +Q Sbjct: 61 ATFFSRDDDSRLLAELKDVVADQE 84 >gi|31747743|gb|AAO38363.1| Lfe164p1 [Leptospirillum ferrooxidans] Length = 85 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 29/77 (37%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G R+ RKA + +E+ +A+ +E+ + + L L + ++ + Sbjct: 7 IGQRLYRARKAAGLSLRELGSRIGLTHAAIKKYEDEQVTPTSATLLKLSRALNVRTEYFF 66 Query: 92 DGEVIDRRYEDVTNKKR 108 E + + + Sbjct: 67 RPETVALDRIEYRKAQH 83 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG RL RK G+S E G +G+ ++ + YE + P K+ + ++ Sbjct: 5 IMIGQRLYRARKAAGLSLRELGSRIGLTHAAIKKYEDEQVTPTSATLLKLSRALNVRTEY 64 Query: 172 IYFGDEVIVPKSIKRA 187 + + V + + R Sbjct: 65 FFRPETVALDRIEYRK 80 >gi|29376650|ref|NP_815804.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344114|gb|AAO81874.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 70 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + LK R+ G +Q F K +G+ +T S+YEQG P ++ A+K+ ++ + W Sbjct: 1 MNQWLKKKRESLGYTQESFAKEIGIAKTTYSSYEQGYRNPTVQTAKKMAKILQVP--WTI 58 Query: 174 FGDEVIVP 181 F DE ++ Sbjct: 59 FFDEEVLE 66 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 30/66 (45%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R++ TQ+ A ++ + +E G + +++ A + ++ + +D EV Sbjct: 5 LKKKRESLGYTQESFAKEIGIAKTTYSSYEQGYRNPTVQTAKKMAKILQVPWTIFFDEEV 64 Query: 96 IDRRYE 101 ++ Sbjct: 65 LETYDF 70 >gi|30262515|ref|NP_844892.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778059|ref|YP_019162.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|52142975|ref|YP_083853.1| DNA-binding protein [Bacillus cereus E33L] gi|165868912|ref|ZP_02213572.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631977|ref|ZP_02390304.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637695|ref|ZP_02395974.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685312|ref|ZP_02876536.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170704891|ref|ZP_02895357.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649731|ref|ZP_02932733.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565261|ref|ZP_03018181.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196040422|ref|ZP_03107723.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218903655|ref|YP_002451489.1| DNA-binding protein [Bacillus cereus AH820] gi|227814666|ref|YP_002814675.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228915109|ref|ZP_04078706.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927582|ref|ZP_04090634.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933813|ref|ZP_04096659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946161|ref|ZP_04108495.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229600860|ref|YP_002866842.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685091|ref|ZP_05148951.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254722499|ref|ZP_05184287.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254737541|ref|ZP_05195244.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743274|ref|ZP_05200959.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751856|ref|ZP_05203893.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254760376|ref|ZP_05212400.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|301054058|ref|YP_003792269.1| DNA-binding protein [Bacillus anthracis CI] gi|30257147|gb|AAP26378.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47551764|gb|AAT31637.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|51976444|gb|AAU17994.1| DNA-binding protein [Bacillus cereus E33L] gi|164715638|gb|EDR21155.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514244|gb|EDR89611.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532275|gb|EDR94911.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130692|gb|EDS99553.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170670672|gb|EDT21411.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084805|gb|EDT69863.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190563288|gb|EDV17253.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196028907|gb|EDX67513.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218535205|gb|ACK87603.1| DNA-binding protein [Bacillus cereus AH820] gi|227004640|gb|ACP14383.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228813507|gb|EEM59794.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825885|gb|EEM71672.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832062|gb|EEM77647.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844538|gb|EEM89592.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265268|gb|ACQ46905.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300376227|gb|ADK05131.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 66 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + RI R TQ+E+A + E + S+ A + N +E ++ Sbjct: 2 LHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITDVF 61 Query: 92 DGEVI 96 D + Sbjct: 62 DYQEE 66 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 + R+ R +KG +Q E K +G+ T++ E+ + P + A KI V +K + + Sbjct: 1 MLHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITDV 60 Query: 173 YFGDEV 178 + E Sbjct: 61 FDYQEE 66 >gi|319937336|ref|ZP_08011743.1| hypothetical protein HMPREF9488_02578 [Coprobacillus sp. 29_1] gi|319807702|gb|EFW04295.1| hypothetical protein HMPREF9488_02578 [Coprobacillus sp. 29_1] Length = 115 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ R+K R + TQKE+A SA++ ENG ++ L + Y S + I Sbjct: 6 DLAKRLKTYRNFKHLTQKEVAAHLEVPHSAISDIENGKRDVTVGELKILSHLYGRSVEEI 65 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKL 135 G+ D Y ++ N RL LK + + + Sbjct: 66 MSGKKYD--YYNIANIARLLTELPDEDLKEVMFIIEYKRKRLEEK 108 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + RLK+ R K ++Q E L +P+S +S+ E G+ + + + + + ++ Sbjct: 5 MDLAKRLKTYRNFKHLTQKEVAAHLEVPHSAISDIENGKRDVTVGELKILSHLYGRSVEE 64 Query: 172 IYFGDE 177 I G + Sbjct: 65 IMSGKK 70 >gi|301382108|ref|ZP_07230526.1| peptidase [Pseudomonas syringae pv. tomato Max13] Length = 151 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 3/106 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI- 90 +G R+K R A TQ E+A ++A++ E G + Y + W+ Sbjct: 10 LGGRVKLARDATGLTQLELAELVGVSQAAISEIERGESA-RTAYLPEISRACGADIQWLA 68 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 + GE + P I + GM + Sbjct: 69 FGGERPASEPCEPAPTVAEKPQEISFCI-EGMGFSGMPLKRVANYI 113 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE 177 +K R G++Q+E +L+G+ + +S E+G + +I + + W+ FG E Sbjct: 14 VKLARDATGLTQLELAELVGVSQAAISEIERGESA-RTAYLPEISRACGADIQWLAFGGE 72 Query: 178 VIVPKSIKRA 187 + + A Sbjct: 73 RPASEPCEPA 82 >gi|291550787|emb|CBL27049.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 127 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + ++ +RK N TQ ++ + A + +E G+ +++ L Y S D + Sbjct: 5 QLADNLRRLRKQYNYTQAQIGKKLHITHQAYSNYETGVREPNLQLLAELSWIYHTSVDSL 64 Query: 91 YD 92 Sbjct: 65 IT 66 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + + L+ +RK +Q + GK L + + SNYE G P ++ ++ + Sbjct: 1 MANIQLADNLRRLRKQYNYTQAQIGKKLHITHQAYSNYETGVREPNLQLLAELSWIYHTS 60 Query: 169 LDWIYF 174 +D + Sbjct: 61 VDSLIT 66 >gi|291545272|emb|CBL18381.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 75 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 36/74 (48%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + RL+ R + +SQ E +L+G+ T+ + E + P + A + ++ Sbjct: 1 MEELILQNRLRHARSQRHLSQGELAQLVGVSRQTICSIENHQFCPSARLALLLCIALEQP 60 Query: 169 LDWIYFGDEVIVPK 182 + +++ ++ P+ Sbjct: 61 FETLFYFEDPEQPE 74 Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 R++ R + +Q E+A + EN S R AL L E F+ ++ Sbjct: 8 NRLRHARSQRHLSQGELAQLVGVSRQTICSIENHQFCPSARLALLLCIALEQPFETLFYF 67 Query: 94 EVIDRRY 100 E ++ Sbjct: 68 EDPEQPE 74 >gi|326200929|ref|ZP_08190801.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988497|gb|EGD49321.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 132 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 25/68 (36%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K +R ++Q E+ + V+ +E G + + +S D++ Sbjct: 4 LSERVKKLRNCKRQSQNEVGKALGKSRETVSKYELGEREPDPEAIILFAKHFNVSSDYLL 63 Query: 92 DGEVIDRR 99 + Sbjct: 64 GINEQSQN 71 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 + R+K +R K SQ E GK LG T+S YE G P+ + + D Sbjct: 1 MSVLSERVKKLRNCKRQSQNEVGKALGKSRETVSKYELGEREPDPEAIILFAKHFNVSSD 60 Query: 171 WIYFGDEVIVPKSIKR 186 ++ +E + + Sbjct: 61 YLLGINEQSQNMATEE 76 >gi|228904543|ref|ZP_04068626.1| Transcriptional repressor [Bacillus thuringiensis IBL 4222] gi|228855107|gb|EEM99683.1| Transcriptional repressor [Bacillus thuringiensis IBL 4222] Length = 112 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+G +K +RK T + +A S N +E + L + + + D+I Sbjct: 2 DIGGNLKFLRKRYGWTTEHVANQLEVSISTYNGYEINYRKPNPEMLCKLADVFNSTTDFI 61 Query: 91 Y 91 Sbjct: 62 L 62 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK +RK G + L + ST + YE P + K+ V D+I Sbjct: 6 NLKFLRKRYGWTTEHVANQLEVSISTYNGYEINYRKPNPEMLCKLADVFNSTTDFIL 62 >gi|198277577|ref|ZP_03210108.1| hypothetical protein BACPLE_03799 [Bacteroides plebeius DSM 17135] gi|198270075|gb|EDY94345.1| hypothetical protein BACPLE_03799 [Bacteroides plebeius DSM 17135] Length = 184 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +G RI+ +R A + + ++MA E+G C ++ + + Sbjct: 1 MDEQIRQIGERIRGLRDALDLSVEDMAGQCGLPVDKYQQIESGECDIAVSTLQQIGRKCN 60 Query: 85 ISFDWIYDGEVIDRRYE 101 + D + GE Sbjct: 61 VPLDVLMFGEEPKMNAY 77 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 31/86 (36%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 R++ +R +S + G+P E G + ++I + LD + FG Sbjct: 10 ERIRGLRDALDLSVEDMAGQCGLPVDKYQQIESGECDIAVSTLQQIGRKCNVPLDVLMFG 69 Query: 176 DEVIVPKSIKRAKGNQSSKKSKKDKK 201 +E + G S + K K Sbjct: 70 EEPKMNAYFLTRWGTGISVERTKAYK 95 >gi|89076037|ref|ZP_01162400.1| putative transcriptional regulator, [Photobacterium sp. SKA34] gi|89048272|gb|EAR53853.1| putative transcriptional regulator, [Photobacterium sp. SKA34] Length = 208 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 14 LQEYTLIITPEIRQYWKDV-----GTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGM 68 +Q+ + E Q + + G R+K+IR + T +E + S ++ EN Sbjct: 6 IQDVYPSMRIEKTQAAEHIAPLKLGERLKEIRVSLGLTLEEASKRTGLARSTLSKIENEQ 65 Query: 69 CSTSIRYALYLRNEYEISFDWIYD 92 S + + L I +++ Sbjct: 66 ISPTYQAMQKLATGLAIDIPQLFE 89 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%) Query: 87 FDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNY 146 D R E + + P +G RLK IR G++ E K G+ STLS Sbjct: 2 TDEYIQDVYPSMRIEKTQAAEHIAPLKLGERLKEIRVSLGLTLEEASKRTGLARSTLSKI 61 Query: 147 EQGRTIPEIKPARKIKQVTKKHLDWIY 173 E + P + +K+ + ++ Sbjct: 62 ENEQISPTYQAMQKLATGLAIDIPQLF 88 >gi|330717978|ref|ZP_08312578.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 86 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (36%) Query: 30 KDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDW 89 +D+ IK IR + ++A N S + +E G I + L + + Sbjct: 23 EDIANNIKQIRLKLGYKRVDVAEQLNISVSTIAKYETGSRIPDIDTIIQLSEVLHTNVNN 82 Query: 90 IYD 92 + Sbjct: 83 LIF 85 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 +K IR G +++ + L + ST++ YE G IP+I ++ +V +++ + F Sbjct: 27 NNIKQIRLKLGYKRVDVAEQLNISVSTIAKYETGSRIPDIDTIIQLSEVLHTNVNNLIF 85 >gi|258509881|ref|YP_003172632.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|257149808|emb|CAR88781.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259651145|dbj|BAI43307.1| phage transcriptional regulator [Lactobacillus rhamnosus GG] Length = 203 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQL---ESAVNLFENGMCSTSIRYALYLRNEYEISFD 88 +G RIK IR + +T +E A+ +SAV+ +E G+ + S + N IS Sbjct: 13 LGERIKSIRISKGETMEEFALSVGLTSSGKSAVSRWERGLSAPSADTMKKIANHGGISVQ 72 Query: 89 WIYDGEVIDRRYEDVTNKK 107 ++ G+ + + Sbjct: 73 FLVTGKPAFEDLPEDQQME 91 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 7/93 (7%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMP---NSTLSNYEQGRTIPEIKPARKIKQVTKK 167 ++G R+KSIR KG + EF +G+ S +S +E+G + P +KI Sbjct: 10 HLSLGERIKSIRISKGETMEEFALSVGLTSSGKSAVSRWERGLSAPSADTMKKIANHGGI 69 Query: 168 HLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDK 200 + ++ G P + Q + ++D+ Sbjct: 70 SVQFLVTGK----PAFEDLPEDQQMELRKQRDE 98 >gi|240851038|ref|YP_002972438.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268161|gb|ACS51749.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 126 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 1/105 (0%) Query: 28 YWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 Y +G +I+ R +QK++ + +E G+ S R + + ++ Sbjct: 9 YDISLGKKIRFRRNLMGFSQKQLGSHLGVTFQQIQKYEKGLNRVSARRLQEIAHILDVPV 68 Query: 88 DWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF 132 + Y + + ++ A LKS R Q Sbjct: 69 SFFYADNTKKEDPLYHCDDR-VESKAEYLLLKSFRMMTRKKQRAI 112 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 ++G +++ R G SQ + G LG+ + YE+G + ++I + Sbjct: 7 HFYDISLGKKIRFRRNLMGFSQKQLGSHLGVTFQQIQKYEKGLNRVSARRLQEIAHILDV 66 Query: 168 HLDWIYFGD 176 + + Y + Sbjct: 67 PVSFFYADN 75 >gi|228935813|ref|ZP_04098625.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823870|gb|EEM69690.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 190 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 13/122 (10%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 ++EY + T E+ Q VG ++ IR + +E+A + + E G + ++ Sbjct: 1 MKEYEDMQTKEVIQ---QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTL 57 Query: 74 RYALYLRNEYEISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 + I + GE + + + Y ++ R Sbjct: 58 AVIWKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRA 117 Query: 124 DK 125 Sbjct: 118 CL 119 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|229175212|ref|ZP_04302728.1| Transcriptional regulator, Xre [Bacillus cereus MM3] gi|228608348|gb|EEK65654.1| Transcriptional regulator, Xre [Bacillus cereus MM3] Length = 190 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|257061988|ref|YP_003139876.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|256592154|gb|ACV03041.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 333 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 15/107 (14%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + IR +Q+ +A A+ + ++L E G + S+ + +I I Sbjct: 8 ELGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERGKRNPSLTCINSIFQALDIDIIEI 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 + + D +L + + ++L Sbjct: 68 F---------------QLFDYTNKINQLSQFCQSYDLEFEYLAEVLN 99 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L IR KG+SQ +L + + +S E+G+ P + I Q + I+ Sbjct: 11 NFLHKIRTRKGLSQEYLAELADLDRTYISLLERGKRNPSLTCINSIFQALDIDIIEIF 68 >gi|189423269|ref|YP_001950446.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189419528|gb|ACD93926.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 161 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 27/167 (16%) Query: 6 FLETSLKSLQEYTLIITPEIRQYW------KDVGTRIKDIRKANNKTQKEMAIGANQLES 59 FL S +++ I E +G I+ R Q+E+A ES Sbjct: 4 FLYNSYVRRHSFSIEIPLEKLPLPGYPTNPVTIGDHIRKRRMDLGLLQREVAEIIGVTES 63 Query: 60 AVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLK 119 +V +E+G ++Y + + D A K Sbjct: 64 SVWNWEHG-VEPELQYNPRIIKFLG-----------------YIPFDCPDDTVGRLAWYK 105 Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTK 166 GM+ G+ +G LS++ GR P K KI+ + Sbjct: 106 RAM---GMNLDHLGEAMGRDPEQLSDWLSGRHNPFRKNREKIELFLE 149 >gi|218248928|ref|YP_002374299.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|218169406|gb|ACK68143.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] Length = 333 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 15/107 (14%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 ++G + IR +Q+ +A A+ + ++L E G + S+ + +I I Sbjct: 8 ELGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERGKRNPSLTCINSIFQALDIDIIEI 67 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLG 137 + + D +L + + ++L Sbjct: 68 F---------------QLFDYTNKINQLSQFCQSYDLEFEYLAEVLN 99 Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L IR KG+SQ +L + + +S E+G+ P + I Q + I+ Sbjct: 11 NFLHKIRTRKGLSQEYLAELADLDRTYISLLERGKRNPSLTCINSIFQALDIDIIEIF 68 >gi|182418405|ref|ZP_02949699.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237666621|ref|ZP_04526606.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377787|gb|EDT75331.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237657820|gb|EEP55375.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 435 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +IK RK N T K++A ++L E+G + S+ YL + + +++ Sbjct: 6 LGEKIKRRRKQLNMTLKDLAKD-RITPGQISLVESGRSNPSVDLLEYLASTLNTTVEYLM 64 Query: 92 DGEV 95 + E Sbjct: 65 ESEE 68 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ ++G ++K RK M+ + K + +S E GR+ P + + Sbjct: 1 MEILSLGEKIKRRRKQLNMTLKDLAKD-RITPGQISLVESGRSNPSVDLLEYLASTLNTT 59 Query: 169 LDWIYFGDEVIVPK 182 ++++ +E K Sbjct: 60 VEYLMESEESQAEK 73 >gi|153004060|ref|YP_001378385.1| helix-turn-helix domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027633|gb|ABS25401.1| helix-turn-helix domain protein [Anaeromyxobacter sp. Fw109-5] Length = 68 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 20/57 (35%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++ +R +QK +A S V++ E G S + + + + Sbjct: 10 NVRRLRAKKKLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPANLL 66 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ +R K +SQ +G+ S +S E+G+ P ++ K+ + + Sbjct: 10 NVRRLRAKKKLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPANLL 66 >gi|108797614|ref|YP_637811.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119866701|ref|YP_936653.1| hypothetical protein Mkms_0647 [Mycobacterium sp. KMS] gi|108768033|gb|ABG06755.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119692790|gb|ABL89863.1| protein of unknown function DUF955 [Mycobacterium sp. KMS] Length = 475 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R +Q +A S +N E+ + ++ L + + + D + Sbjct: 6 VGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLD 110 D R + +D Sbjct: 64 FASQDDTRLVAELREVAMD 82 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 35/84 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+R++ +R ++G SQ ++L + S L+ E + +I +V Sbjct: 1 MAKTFVGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 + D+ + ++ ++ Sbjct: 61 ATFFASQDDTRLVAELREVAMDRE 84 >gi|73540702|ref|YP_295222.1| helix-hairpin-helix DNA-binding motif-containing protein [Ralstonia eutropha JMP134] gi|72118115|gb|AAZ60378.1| Helix-turn-helix motif [Ralstonia eutropha JMP134] Length = 129 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 1/109 (0%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + ++ G + +RK +Q+ +++ + S ++ E G + ++ L + Sbjct: 2 TKHTLREFGLHLARLRKRRGWSQETLSLESGLARSYLSGIERGKRNLALLNICMLADTLG 61 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS-IRKDKGMSQIEF 132 + + D E+ V + + A A +++ +R +S+ E Sbjct: 62 VPPSEMLDFEIQGSSALHVEEPRSVFGNAQNAAIEATLRHMAELSEAEV 110 Score = 43.4 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 21/60 (35%) Query: 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGD 176 L +RK +G SQ G+ S LS E+G+ + + + + Sbjct: 12 HLARLRKRRGWSQETLSLESGLARSYLSGIERGKRNLALLNICMLADTLGVPPSEMLDFE 71 >gi|70725716|ref|YP_252630.1| hypothetical protein SH0715 [Staphylococcus haemolyticus JCSC1435] gi|68446440|dbj|BAE04024.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 65 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 ++K R +Q E+A +N+ EN + S++ + + ++ + ++ Sbjct: 2 NKVKVYRGVKKISQLELARSVGVSRQTINMIENDKYNPSLKLCINIAKTLGVTLNDLF 59 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++K R K +SQ+E + +G+ T++ E + P +K I + L+ +++ Sbjct: 1 MNKVKVYRGVKKISQLELARSVGVSRQTINMIENDKYNPSLKLCINIAKTLGVTLNDLFW 60 Query: 175 GDE 177 E Sbjct: 61 EVE 63 >gi|126175739|ref|YP_001051888.1| XRE family transcriptional regulator [Shewanella baltica OS155] gi|125998944|gb|ABN63019.1| putative transcriptional regulator, XRE family [Shewanella baltica OS155] Length = 81 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 25/68 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++ + G ++ +RK +Q E+A+ A S + E + ++ + + Sbjct: 1 MKTLATEFGHAMRKMRKLRGLSQDELALRAEIDRSYIGRIERAEANITLDMLYKIAEVLD 60 Query: 85 ISFDWIYD 92 + Sbjct: 61 CEPHELLP 68 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 G ++ +RK +G+SQ E + S + E+ + KI +V + Sbjct: 7 EFGHAMRKMRKLRGLSQDELALRAEIDRSYIGRIERAEANITLDMLYKIAEVLDCEPHEL 66 Query: 173 Y 173 Sbjct: 67 L 67 >gi|319937945|ref|ZP_08012345.1| hypothetical protein HMPREF9488_03181 [Coprobacillus sp. 29_1] gi|319806851|gb|EFW03490.1| hypothetical protein HMPREF9488_03181 [Coprobacillus sp. 29_1] Length = 107 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 D+ R+K+ R + TQKE+A + SAV+ FENG ++ L Y + + I Sbjct: 6 DISRRLKEYRNFKHLTQKEVANILHIPHSAVSDFENGKREITVSELSLLSQLYGRNIEEI 65 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRK 123 +G+ D Y ++ N RL +K + Sbjct: 66 INGKKYD--YYNIANIARLLTELPNEDIKEVMH 96 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R K ++Q E +L +P+S +S++E G+ + + Q+ ++++ I G Sbjct: 9 RRLKEYRNFKHLTQKEVANILHIPHSAVSDFENGKREITVSELSLLSQLYGRNIEEIING 68 Query: 176 DE 177 + Sbjct: 69 KK 70 >gi|295697361|ref|YP_003590599.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412963|gb|ADG07455.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 143 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/122 (9%), Positives = 33/122 (27%), Gaps = 6/122 (4%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMC-STSIRYALYLRNEYEISFDWI 90 G ++K +R T ++++ + S ++ E G S + A+ L E+ Sbjct: 5 FGVKLKQLRTERGWTLEQLSARSGLSISHISSLERGTRMKPSFQVAVRLARALEVPLATF 64 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGR 150 + + + + Q + + + + Sbjct: 65 LEDAGKEESDPLEHLPPEIREFVSREDATPYLYLAKRLQE-----AHVSLQEMERWLRDE 119 Query: 151 TI 152 Sbjct: 120 RS 121 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ-GRTIPEIKPARKIKQVTKKHLD 170 A G +LK +R ++G + + G+ S +S+ E+ R P + A ++ + + L Sbjct: 3 NAFGVKLKQLRTERGWTLEQLSARSGLSISHISSLERGTRMKPSFQVAVRLARALEVPLA 62 Query: 171 WIYF--GDEVIVP 181 G E P Sbjct: 63 TFLEDAGKEESDP 75 >gi|257439726|ref|ZP_05615481.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197866|gb|EEU96150.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 266 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+KD+R T +++A + +SA+ +E S + L YE++ D++ Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDKFKDISHYALIELAKFYEVTVDYL 64 Query: 91 YDGEVIDRRYEDV 103 Sbjct: 65 LGRSETKNHSNAD 77 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 1/82 (1%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVTKKHLD 170 +I RLK +R ++G++ + + + S L +YE + ++ + + +D Sbjct: 3 LSIQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDKFKDISHYALIELAKFYEVTVD 62 Query: 171 WIYFGDEVIVPKSIKRAKGNQS 192 ++ E + A S Sbjct: 63 YLLGRSETKNHSNADLADLRLS 84 >gi|187939539|gb|ACD38687.1| hypothetical helix-turn-helix protein [Pseudomonas aeruginosa] Length = 132 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 9/104 (8%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS 86 + + +G R+K+ R+ Q + A N +++ +E G S Y + + + Sbjct: 17 ETYVGIGERLKEERERLGMNQTDFAAQLNVSKNSQYNYEKGERSPDALYLSA-ADAFGVD 75 Query: 87 FDWIYDGEVIDRRYEDVTNKK--------RLDPYAIGARLKSIR 122 ++ G + + ++ + +D A ++ R Sbjct: 76 VLYVITGRRLPAELDALSQSELDVLGYMTSMDEADRAAYVRMGR 119 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R+ GM+Q +F L + ++ NYE+G P+ + ++ G Sbjct: 24 ERLKEERERLGMNQTDFAAQLNVSKNSQYNYEKGERSPDALYLSA-ADAFGVDVLYVITG 82 >gi|167760581|ref|ZP_02432708.1| hypothetical protein CLOSCI_02955 [Clostridium scindens ATCC 35704] gi|167661802|gb|EDS05932.1| hypothetical protein CLOSCI_02955 [Clostridium scindens ATCC 35704] Length = 184 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + + +K+IRK + ++ + + +S ++ E G + +I L + Sbjct: 1 MERLNQIIAENLKEIRKGKGLSLEQASALTSISKSMLSQLERGEVNPTISTVYKLSLGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL---DPYAIGARLKSIR 122 + + + L D + + R Sbjct: 61 VPVTAFTLDKPKPFSKTGKSEVVPLSGDDGRYRLYPIFNFR 101 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 24/54 (44%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 LK IRK KG+S + L + S LS E+G P I K+ K + Sbjct: 10 ENLKEIRKGKGLSLEQASALTSISKSMLSQLERGEVNPTISTVYKLSLGLKVPV 63 >gi|16799514|ref|NP_469782.1| hypothetical protein lin0437 [Listeria innocua Clip11262] gi|16412866|emb|CAC95670.1| lin0437 [Listeria innocua Clip11262] gi|313620564|gb|EFR91899.1| DNA-binding protein [Listeria innocua FSL S4-378] Length = 67 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 29/66 (43%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 V +++ +R+ Q E+A+ ++ E G + S+ +L + + ++ + I Sbjct: 2 KVSNKVRQLREERAIGQNELALALEVSRQTIHAIEKGKYNPSLELSLKMARYFHLTIEEI 61 Query: 91 YDGEVI 96 + E Sbjct: 62 FQLEED 67 Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 33/67 (49%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + +++ +R+++ + Q E L + T+ E+G+ P ++ + K+ + ++ Sbjct: 1 MKVSNKVRQLREERAIGQNELALALEVSRQTIHAIEKGKYNPSLELSLKMARYFHLTIEE 60 Query: 172 IYFGDEV 178 I+ +E Sbjct: 61 IFQLEED 67 >gi|121605836|ref|YP_983165.1| anaerobic benzoate catabolism transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594805|gb|ABM38244.1| transcriptional regulator, XRE family with shikimate kinase activity [Polaromonas naphthalenivorans CJ2] Length = 324 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 E + +G R++ +R T+K ++I A+ E + E G + SI L + Sbjct: 37 EKNLFLAALGDRVRALRARRGMTRKAVSIAADVSERHLANLEYGEGNASILVLLQVARAL 96 Query: 84 EISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQ----------IEFG 133 S + + + L A L+ +R G Sbjct: 97 HCSLAELIGDVTTSTPEWLLI--RELLETRDDASLRRVRIAIGELLGTGSGNTTLCSRVA 154 Query: 134 KLLGMP---NSTLSNYEQGR-TIPEIKPARKIKQVTKKHLDWI 172 L+G+ STL P ++ +R+I++ + I Sbjct: 155 -LIGLRGAGKSTLGALLAEDLGFPFVELSREIEKFAGCSVSEI 196 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%) Query: 100 YEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPAR 159 E +K L A+G R++++R +GM++ + L+N E G I Sbjct: 31 QEPQVEEKNLFLAALGDRVRALRARRGMTRKAVSIAADVSERHLANLEYGEGNASILVLL 90 Query: 160 KIKQVTKKHLDWIYFGDEVIVPK 182 ++ + L + P+ Sbjct: 91 QVARALHCSLAELIGDVTTSTPE 113 >gi|332297685|ref|YP_004439607.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180788|gb|AEE16476.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 107 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G I+ RK TQ+++A A + E G S S+ + + +D ++ Sbjct: 8 LGQNIRKFRKNLGWTQEQLAEKAQISVPFMTQIELGRKSASLEVIENISKSLGVPYDALF 67 Query: 92 DGEVIDR 98 + D Sbjct: 68 KKDAADM 74 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 ++ RK+ G +Q + + + ++ E GR ++ I + D ++ Sbjct: 10 QNIRKFRKNLGWTQEQLAEKAQISVPFMTQIELGRKSASLEVIENISKSLGVPYDALFKK 69 Query: 176 D 176 D Sbjct: 70 D 70 >gi|327473429|gb|EGF18849.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 225 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 3/97 (3%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++K R N TQ + + +ENG+ + L ++ ++ D Sbjct: 5 EKLKKRRLELNLTQASIYQELGVSRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 94 EV--IDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMS 128 +KK +D A L+ RK ++ Sbjct: 65 TSALYTYPLLTPPHKKEVDKLASR-LLERQRKISSLT 100 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 +LK R + ++Q + LG+ T S +E G P K R++ K ++ Sbjct: 1 MFSHEKLKKRRLELNLTQASIYQELGVSRKTYSAWENGLAEPHAKNLRRLATCLKVQENY 60 Query: 172 IY 173 Sbjct: 61 FV 62 >gi|312902013|ref|ZP_07761275.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311290949|gb|EFQ69505.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 74 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%) Query: 27 QYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + + + G +I+ R N +Q E++ ++ +ENG + + + N Sbjct: 15 EVFMNTGEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFL 71 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 G +++ R +K +SQ+E +L + T+SN+E GRT PE++ I Sbjct: 17 FMNTGEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFL 71 >gi|310642951|ref|YP_003947709.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309247901|gb|ADO57468.1| Predicted transcriptional regulator [Paenibacillus polymyxa SC2] Length = 112 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K R T ++MA A +E+G + L + E+S D++ Sbjct: 5 DRLKKERILKKLTHEDMATKLGITRQAYGNYESGKRDVDSQTLSKLADILEVSGDYLL 62 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 LK R K ++ + LG+ NYE G+ + + K+ + + D++ Sbjct: 7 LKKERILKKLTHEDMATKLGITRQAYGNYESGKRDVDSQTLSKLADILEVSGDYLL 62 >gi|296161883|ref|ZP_06844684.1| helix-turn-helix domain protein [Burkholderia sp. Ch1-1] gi|295887902|gb|EFG67719.1| helix-turn-helix domain protein [Burkholderia sp. Ch1-1] Length = 79 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 K VG I+ RK TQ +A+ A + ++L E I + + + Sbjct: 3 KEALIKAVGKEIRARRKVKKLTQAGLAMRAAVHPNTISLIERAKTIAGIDALIDIADALG 62 Query: 85 ISFDWIYD 92 +S + Sbjct: 63 VSLSQLIK 70 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI 172 A+G +++ RK K ++Q + +T+S E+ +TI I I L + Sbjct: 9 AVGKEIRARRKVKKLTQAGLAMRAAVHPNTISLIERAKTIAGIDALIDIADALGVSLSQL 68 Query: 173 YFGDEV 178 E Sbjct: 69 IKAAED 74 >gi|270261929|ref|ZP_06190201.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] gi|270043805|gb|EFA16897.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] Length = 189 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 22/56 (39%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 I+ R+ + E+A A +S ++ E G + S+ L ++ + Sbjct: 19 IRRERERLGLSVTELARRAGIAKSTLSQLETGSGNPSLETLWSLAMALDVPVSRLI 74 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 ++ R+ G+S E + G+ STLS E G P ++ + + + Sbjct: 19 IRRERERLGLSVTELARRAGIAKSTLSQLETGSGNPSLETLWSLAMALDVPVSRLI 74 >gi|228985529|ref|ZP_04145685.1| hypothetical protein bthur0001_22230 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774206|gb|EEM22616.1| hypothetical protein bthur0001_22230 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324326453|gb|ADY21713.1| transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 185 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 + + + +K IR+ + ++++ ++ + E G S ++ + N + Sbjct: 1 MEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLK 60 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRL 109 +SF + + D + + + L Sbjct: 61 VSFTSLINNPQPDTKVVLRNDVQVL 85 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 LK+IR+ + +S + +L G+ + + E+G + P + KI K + Sbjct: 10 KNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSLINN 69 Query: 176 DEVIVPKSIKR 186 + ++ Sbjct: 70 PQPDTKVVLRN 80 >gi|209551999|ref|YP_002283915.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539592|gb|ACI59523.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 466 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +G +++++R + Q + A S +N E+ S L L +++++ + Sbjct: 8 IGKKVRELRLLHKANQSQFAERLGISTSYLNQIESNQRPVSAAVLLALVDKFQLDMSDLA 67 Query: 92 DGEVID 97 GE+ Sbjct: 68 TGEIDR 73 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 IG +++ +R +Q +F + LG+ S L+ E + + + + Sbjct: 6 LFIGKKVRELRLLHKANQSQFAERLGISTSYLNQIESNQRPVSAAVLLALVDKFQLDMSD 65 Query: 172 IYFGD 176 + G+ Sbjct: 66 LATGE 70 >gi|126740981|ref|ZP_01756664.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126717907|gb|EBA14626.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 204 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 28/78 (35%) Query: 14 LQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73 +E L + + +G I+D RK T +E A A S ++ EN S Sbjct: 6 TEETGLALEAAEAPDGEILGKMIRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTRPSF 65 Query: 74 RYALYLRNEYEISFDWIY 91 L E+ ++ Sbjct: 66 EIIRRLMQTLELETPQLF 83 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHL 169 D +G ++ RK+KG++ E K + STLS E +T P + R++ Q + Sbjct: 20 DGEILGKMIRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTRPSFEIIRRLMQTLELET 79 Query: 170 DWIY 173 ++ Sbjct: 80 PQLF 83 >gi|118479657|ref|YP_896808.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|118418882|gb|ABK87301.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] Length = 190 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEY 83 + ++ + VG ++ IR + +E+A + + E G + ++ + Sbjct: 8 QTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGL 67 Query: 84 EISFDWIY----------DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDK 125 I + GE + + + Y ++ R Sbjct: 68 SIPLSRLMVVGEPVAVARCGEGFAVDAGQAWHLETMFRYTKETGMEMHRACL 119 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 L+ IR ++ +S E + G+ TL E+G T P + KI + L + Sbjct: 20 LRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLM 75 >gi|55820628|ref|YP_139070.1| transcriptional repressor [Streptococcus thermophilus LMG 18311] gi|55822519|ref|YP_140960.1| transcriptional repressor [Streptococcus thermophilus CNRZ1066] gi|55736613|gb|AAV60255.1| transcriptional repressor, putative [Streptococcus thermophilus LMG 18311] gi|55738504|gb|AAV62145.1| transcriptional repressor, putative [Streptococcus thermophilus CNRZ1066] Length = 72 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%) Query: 35 RIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 R+K + ++ TQ ++A + L E G C+ S+ + + + + D ++ Sbjct: 13 RLKVAQAEHDMTQGDLAEAVGATRQTIGLIEAGKCNPSLALCIAICKTLDRTLDQLF 69 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 A RLK + + M+Q + + +G T+ E G+ P + I + + LD Sbjct: 7 HVAKNLRLKVAQAEHDMTQGDLAEAVGATRQTIGLIEAGKCNPSLALCIAICKTLDRTLD 66 Query: 171 WIYFGD 176 +++ D Sbjct: 67 QLFWED 72 >gi|325261695|ref|ZP_08128433.1| HTH DNA-binding protein [Clostridium sp. D5] gi|324033149|gb|EGB94426.1| HTH DNA-binding protein [Clostridium sp. D5] Length = 71 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 +I+ +RK TQ E+A + ENG + S+ A + + ++ + I+ Sbjct: 3 NKIQQLRKERRITQSELADAVEVTRQTIISLENGRYNASLILAHKIAQYFGVNIEDIF 60 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173 + +++ +RK++ ++Q E + + T+ + E GR + A KI Q +++ I+ Sbjct: 1 MENKIQQLRKERRITQSELADAVEVTRQTIISLENGRYNASLILAHKIAQYFGVNIEDIF 60 Query: 174 FGD 176 + Sbjct: 61 IFN 63 >gi|320103090|ref|YP_004178681.1| helix-turn-helix domain-containing protein [Isosphaera pallida ATCC 43644] gi|319750372|gb|ADV62132.1| helix-turn-helix domain protein [Isosphaera pallida ATCC 43644] Length = 135 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKK 167 L L+ I +G+ Q + + + S++S G P+IK A ++ ++ + Sbjct: 1 MLGDMGFSENLRQICALRGIDQGTLAEKVNVSKSSMSRIWNGNQEPKIKLAYEMAKILEV 60 Query: 168 HLDWIYFGD 176 LD + + Sbjct: 61 PLDRLVSEE 69 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 8/103 (7%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 ++ I Q +A N +S+++ NG I+ A + E+ D + Sbjct: 9 ENLRQICALRGIDQGTLAEKVNVSKSSMSRIWNGNQEPKIKLAYEMAKILEVPLDRLVSE 68 Query: 94 EVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEFGKLL 136 E ++ + + ++ +R + + E K L Sbjct: 69 EGVESQGY--------FEHLTEEEMQLLRIVRRLGLQEAFKRL 103 >gi|315180160|gb|ADT87074.1| hypothetical protein vfu_A01915 [Vibrio furnissii NCTC 11218] gi|315181548|gb|ADT88461.1| hypothetical protein vfu_B00214 [Vibrio furnissii NCTC 11218] gi|315181554|gb|ADT88467.1| hypothetical protein vfu_B00220 [Vibrio furnissii NCTC 11218] Length = 173 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 34/124 (27%), Gaps = 7/124 (5%) Query: 36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 +K R+A Q ++A +ENG L +S I GE Sbjct: 9 LKRTREAKGLKQAQVAEYVGVTAQTYMKWENGKNQPKADDIKKLAEILGVSESEICRGET 68 Query: 96 IDRRYEDVTNKKR-------LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQ 148 + +T K+ LD + L +DK + YE Sbjct: 69 FADNADPLTFMKKTAVMKNALDEVTFTSVLFEFIQDKKKFIERLEQEAFATEDAYRRYEA 128 Query: 149 GRTI 152 Sbjct: 129 AEME 132 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 + LK R+ KG+ Q + + +G+ T +E G+ P+ +K+ ++ Sbjct: 3 IMLEDVLKRTREAKGLKQAQVAEYVGVTAQTYMKWENGKNQPKADDIKKLAEILGVSESE 62 Query: 172 IYFGD 176 I G+ Sbjct: 63 ICRGE 67 >gi|304405777|ref|ZP_07387435.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304345020|gb|EFM10856.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 71 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%) Query: 31 DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI 90 + RI+ RK TQ+++A + + + E G + + I +D + Sbjct: 5 QLAQRIRAFRKLKGFTQQQLAERLSVSVAVLGSLERGTRKPDPKLLANIAETLGIDYDEL 64 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 ++ + R+++ RK KG +Q + + L + + L + E+G P+ K I + Sbjct: 1 MENDQLAQRIRAFRKLKGFTQQQLAERLSVSVAVLGSLERGTRKPDPKLLANIAETLGID 60 Query: 169 LDWI 172 D + Sbjct: 61 YDEL 64 >gi|260853764|ref|YP_003227655.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|293403667|ref|ZP_06647758.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298379279|ref|ZP_06989160.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|300903179|ref|ZP_07121111.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300929088|ref|ZP_07144582.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|301019699|ref|ZP_07183852.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|301301704|ref|ZP_07207839.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|257752413|dbj|BAI23915.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|291429520|gb|EFF02540.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298280392|gb|EFI21896.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|299882087|gb|EFI90298.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|300404794|gb|EFJ88332.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300462961|gb|EFK26454.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|300843201|gb|EFK70961.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|315252878|gb|EFU32846.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] gi|323965045|gb|EGB60506.1| peptidase S24 [Escherichia coli M863] Length = 229 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 + R+K+ R A TQK + ++A+ E G + + + + + N + +W+ Sbjct: 5 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTK-IVEIANALGVRAEWLS 63 Query: 92 DG 93 G Sbjct: 64 SG 65 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFG 175 RLK R +G++Q G L+G+ + + E G+ K I +W+ G Sbjct: 7 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVE-IANALGVRAEWLSSG 65 Query: 176 DEVIVPKSIKRAKGNQSSKK 195 + +++ + S K Sbjct: 66 VGNMSDSTVQPIQSTVSHSK 85 >gi|183980814|ref|YP_001849105.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174140|gb|ACC39250.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 474 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R +Q +A S +N E+ + ++ L + + + D + Sbjct: 6 VGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDVRPLTVAVLLRITEVFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLD 110 D R + +D Sbjct: 64 FSSQDDTRLVAELREVTMD 82 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+R++ +R ++G SQ +LL + S L+ E + +I +V Sbjct: 1 MSKTFVGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 + D+ + ++ ++ Sbjct: 61 ATFFSSQDDTRLVAELREVTMDRD 84 >gi|217958091|ref|YP_002336635.1| hypothetical protein BCAH187_A0631 [Bacillus cereus AH187] gi|217068076|gb|ACJ82326.1| conserved domain protein [Bacillus cereus AH187] Length = 73 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 34 TRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDG 93 +I +RK TQ+E+A+ + ++ ENG S+ AL + S + I+ Sbjct: 2 NQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFKT 61 Query: 94 EVIDRRYED 102 +V ++ Sbjct: 62 KVRKTNSDN 70 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 115 GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYF 174 ++ +RK K ++Q E +G+ + LSN E G+ P + A KI +V ++ I+ Sbjct: 1 MNQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60 >gi|166033505|ref|ZP_02236334.1| hypothetical protein DORFOR_03231 [Dorea formicigenerans ATCC 27755] gi|166026690|gb|EDR45447.1| hypothetical protein DORFOR_03231 [Dorea formicigenerans ATCC 27755] Length = 320 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 2/100 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCS-TSIRYALYLRNEYEISFDWI 90 + R+ ++RK +E++ +SA+ +E + + L + Y +S D++ Sbjct: 59 IQERLWELRKDKGLNLEELSKLTGISKSALGSYEKEDYKEINHGNLITLADFYGVSVDYL 118 Query: 91 YDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQI 130 + + L+ + A LKS R + + Sbjct: 119 LCRTENREQINTPLTELHLND-EMVALLKSGRINNRLLCE 157 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 120 SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT-IPEIKPARKIKQVTKKHLDWIYFGDE 177 +RKDKG++ E KL G+ S L +YE+ + +D++ E Sbjct: 65 ELRKDKGLNLEELSKLTGISKSALGSYEKEDYKEINHGNLITLADFYGVSVDYLLCRTE 123 >gi|218779200|ref|YP_002430518.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760584|gb|ACL03050.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 196 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 7/102 (6%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 ++Q + + RKA+N +Q+ +A + +S + E G S+ + + + Sbjct: 8 LQQTKYALAKNVAVGRKAHNMSQQALADASGVSKSTIAAIETGKGEPSLSTIVAIACTLQ 67 Query: 85 ISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKG 126 S ++ + N L Y LK ++ KG Sbjct: 68 CSPQMLFFDD-------STLNFLMLLLYHHPEELKKVKLSKG 102 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 9/89 (10%) Query: 112 YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDW 171 YA+ + RK MSQ G+ ST++ E G+ P + I + Sbjct: 13 YALAKNVAVGRKAHNMSQQALADASGVSKSTIAAIETGKGEPSLSTIVAIACTLQCSPQM 72 Query: 172 IYFGDEVIV---------PKSIKRAKGNQ 191 ++F D + P+ +K+ K ++ Sbjct: 73 LFFDDSTLNFLMLLLYHHPEELKKVKLSK 101 >gi|149907858|ref|ZP_01896526.1| DNA-binding protein [Moritella sp. PE36] gi|149808864|gb|EDM68795.1| DNA-binding protein [Moritella sp. PE36] Length = 214 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 25/69 (36%) Query: 25 IRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYE 84 I +G+R+K R + + + ++ + E G S ++ + N +E Sbjct: 18 IINIHTSLGSRLKTARSNKGWSLDKTSQHTGVSKAMLGQIERGESSPTVVKLWNIANGFE 77 Query: 85 ISFDWIYDG 93 + + Sbjct: 78 LPLSYFLTD 86 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 111 PYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLD 170 ++G+RLK+ R +KG S + + G+ + L E+G + P + I + L Sbjct: 22 HTSLGSRLKTARSNKGWSLDKTSQHTGVSKAMLGQIERGESSPTVVKLWNIANGFELPLS 81 Query: 171 WIYFG 175 + Sbjct: 82 YFLTD 86 >gi|118619629|ref|YP_907961.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571739|gb|ABL06490.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 474 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 VG+R++ +R +Q +A S +N E+ + ++ L + + + D + Sbjct: 6 VGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDVRPLTVAVLLRITEVFGV--DATF 63 Query: 92 DGEVIDRRYEDVTNKKRLD 110 D R + +D Sbjct: 64 FSSQDDTRLVAELREVTMD 82 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%) Query: 109 LDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKH 168 + +G+R++ +R ++G SQ +LL + S L+ E + +I +V Sbjct: 1 MSKTFVGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query: 169 LDWIYFGDEVIVPKSIKRAKGNQS 192 + D+ + ++ ++ Sbjct: 61 ATFFSSQDDTRLVAELREVTMDRD 84 >gi|57652609|ref|YP_185312.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus COL] gi|87160419|ref|YP_493064.1| Cro/CI family transcriptional regulator-related protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194131|ref|YP_498920.1| hypothetical protein SAOUHSC_00331 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161508620|ref|YP_001574279.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142657|ref|ZP_03567150.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253730712|ref|ZP_04864877.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735091|ref|ZP_04869256.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|258453058|ref|ZP_05701051.1| transcriptional regulator [Staphylococcus aureus A5948] gi|262048913|ref|ZP_06021793.1| hypothetical protein SAD30_0759 [Staphylococcus aureus D30] gi|262052844|ref|ZP_06025029.1| hypothetical protein SA930_1142 [Staphylococcus aureus 930918-3] gi|282922321|ref|ZP_06330012.1| transcriptional regulator [Staphylococcus aureus A9765] gi|284023358|ref|ZP_06377756.1| Cro/CI family transcriptional regulator-related protein [Staphylococcus aureus subsp. aureus 132] gi|294849997|ref|ZP_06790735.1| transcriptional regulator [Staphylococcus aureus A9754] gi|304380314|ref|ZP_07363034.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286795|gb|AAW38889.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus COL] gi|87126393|gb|ABD20907.1| transcriptional regulator, Cro/CI family-related protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201689|gb|ABD29499.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160367429|gb|ABX28400.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725556|gb|EES94285.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726891|gb|EES95620.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257859268|gb|EEV82123.1| transcriptional regulator [Staphylococcus aureus A5948] gi|259159245|gb|EEW44304.1| hypothetical protein SA930_1142 [Staphylococcus aureus 930918-3] gi|259162985|gb|EEW47547.1| hypothetical protein SAD30_0759 [Staphylococcus aureus D30] gi|269939929|emb|CBI48301.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus