RPSBLAST alignment of GI: 254781218 and protein with PDBid: 3ivp
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} Length = 126
Score = 55.1 bits (132), Expect = 1e-08
Identities = 17/97 (17%), Positives = 40/97 (41%)
Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164
+ + D A+G +K RK +G+++ + G ++ + L+N E P ++ + +
Sbjct: 4 KEDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSL 63
Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201
+D + V + +R N+ + D
Sbjct: 64 LNVSVDEFFLPASSQVKSTKRRQLENKIDNFTDADLV 100