BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781218|ref|YP_003065631.1| hypothetical protein
CLIBASIA_05625 [Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 205

 Score =  421 bits (1082), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60
           MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA
Sbjct: 1   MFLNPFLETSLKSLQEYTLIITPEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESA 60

Query: 61  VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120
           VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS
Sbjct: 61  VNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNKKRLDPYAIGARLKS 120

Query: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180
           IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV
Sbjct: 121 IRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIV 180

Query: 181 PKSIKRAKGNQSSKKSKKDKKSSNP 205
           PKSIKRAKGNQSSKKSKKDKKSSNP
Sbjct: 181 PKSIKRAKGNQSSKKSKKDKKSSNP 205


>537021.9.peg.1101_1 
          Length = 37

 Score = 38.5 bits (88), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 19/22 (86%)

Query: 164 VTKKHLDWIYFGDEVIVPKSIK 185
           V KK LDWIYFGDE+I+PK ++
Sbjct: 1   VLKKSLDWIYFGDEMIIPKKLE 22


>gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 144

 Score = 30.4 bits (67), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 103 VTNKKRLDPYAI--GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149
           V NKK  +P  I  G R++  R   GMSQ + G+ LG+    +  YE+G
Sbjct: 2   VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 24.3 bits (51), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 155 IKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKD 199
           I P R++     + L+W+Y    V+V   I    G  S  + ++D
Sbjct: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRD 120


>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 920

 Score = 23.5 bits (49), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 130 IEFGKLLGMPNSTLS 144
           I+ GKL G+PN+ +S
Sbjct: 816 IQVGKLAGLPNTVIS 830


>537021.9.peg.1058_1 
          Length = 37

 Score = 22.7 bits (47), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 174 FGDEVIVPKSIKRAKGNQS 192
            GDEVI+PK + R   + S
Sbjct: 5   LGDEVIIPKKLIRRSASLS 23


>gi|254780147|ref|YP_003064560.1| 50S ribosomal protein L11 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 142

 Score = 21.9 bits (45), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 37  KDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73
           ++IRK      ++M  GA  +E A+ + E   CS  I
Sbjct: 104 ENIRKIAQLKMQDM--GAIDIEGAMRMVEGSACSMGI 138


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.133    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,294
Number of Sequences: 1233
Number of extensions: 5201
Number of successful extensions: 16
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 9
length of query: 205
length of database: 328,796
effective HSP length: 70
effective length of query: 135
effective length of database: 242,486
effective search space: 32735610
effective search space used: 32735610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 36 (18.5 bits)