Query gi|254781219|ref|YP_003065632.1| hypothetical protein CLIBASIA_05630 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 200 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 23:09:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781219.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1k8t_A Calmodulin-sensitive a 59.4 14 0.0004 18.0 4.8 52 112-163 35-86 (139) 2 >2iny_A Hexon protein, late pr 45.4 17 0.00049 17.4 2.6 27 1-36 68-95 (143) 3 >2qr4_A Peptidase M3B, oligoen 42.6 24 0.00072 16.2 4.2 50 43-92 25-74 (398) 4 >1xfx_A Calmodulin-sensitive a 41.1 15 0.00043 17.8 1.8 50 113-162 15-64 (149) 5 >1q5z_A SIPA, SIPA; cell invas 29.6 39 0.0011 14.9 4.0 42 44-91 123-164 (177) 6 >2g3v_A CAG pathogenicity isla 22.8 51 0.0015 14.0 3.2 75 81-159 24-103 (170) 7 >2kru_A Light-independent prot 20.9 35 0.001 15.1 0.9 23 43-65 21-43 (63) 8 >2obe_A Hexon, PII; trimer, do 19.0 56 0.0017 13.7 1.6 27 1-36 15-42 (43) 9 >2g7j_A Putative cytoplasmic p 18.4 37 0.0011 15.0 0.5 20 135-154 93-112 (124) 10 >1pl4_A Superoxide dismutase [ 17.6 36 0.0011 15.1 0.3 15 164-178 12-26 (85) No 1 >>1k8t_A Calmodulin-sensitive adenylate cyclase; edema factor, adenylyl cyclase, anthrax, toxin, lyase; 2.60A {Bacillus anthracis} (A:341-479) Probab=59.41 E-value=14 Score=18.01 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=40.3 Q ss_pred HHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 9999999998530101036432245666578999999999999985208815 Q gi|254781219|r 112 DKLNKILKKSVRNYSRDSGHLNRDVIFHSRYALIRYLEDFYKEIKHTFGNPA 163 (200) Q Consensus 112 dklnkilkksvrnysrdsghlnrdvifhsryaliryledfykeikhtfgnpa 163 (200) ..|..|-+.+-...+.||||-..-.--.|--.+-.|++|+|....|-||... T Consensus 35 ~~l~sirrss~~~~~~ds~~kdefakkesv~~i~~~~~dyyn~an~~~~~e~ 86 (139) T 1k8t_A 35 KNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANHIFSQEK 86 (139) T ss_dssp HHHHHHHHHHCSCSBCCSSCSSHHHHHHHHHHHHHHHHHHHHGGGGCCCHHH T ss_pred HHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 8889998642622672356521233354599997668874263334223110 No 2 >>2iny_A Hexon protein, late protein 2; avian adenovirus, CELO, major coat protein, crystal packing, nanotechnology, viral jelly roll, viral protein; 3.90A {Fowl adenovirus 1} (A:360-502) Probab=45.45 E-value=17 Score=17.39 Aligned_cols=27 Identities=30% Similarity=0.603 Sum_probs=19.6 Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 96215799-9998887899999999886418011113 Q gi|254781219|r 1 MEIDLQKQ-FKNYLHEDVKFYLDKWCEALYSPESYSN 36 (200) Q Consensus 1 meidlqkq-fknylhedvkfyldkwcealyspesysn 36 (200) |||+||.+ ++++|-..| |+|-|.+|.- T Consensus 68 MEINL~AnLwr~FLySNV---------AlYLPD~~K~ 95 (143) T 2iny_A 68 YEIDIAAATRRNFIMSNI---------ADYLPDKYKF 95 (143) T ss_dssp CCCCHHHHHHHHHHHHHT---------GGGSCGGGSE T ss_pred EEECHHHHHHHHHHHHHH---------HHHCCCCCCC T ss_conf 666386888877888776---------8665744523 No 3 >>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein structure initiative; 2.50A {Enterococcus faecium DO} (A:146-161,A:206-587) Probab=42.56 E-value=24 Score=16.23 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999765406436987289951036779999999975357777 Q gi|254781219|r 43 LRDKIIELRRKFAKENGLKTVTEVCPKPKDITYSLSHFIEGLIESERSKI 92 (200) Q Consensus 43 lrdkiielrrkfakenglktvtevcpkpkdityslshfieglieserski 92 (200) .-.++|++|++.|+.+|-.+..+..-.++...-..-.|++.+.+.-+... T Consensus 25 ~l~~li~lr~~~A~~lGy~s~~~~~l~~~~~~~~~~~~l~~l~~~~~p~~ 74 (398) T 2qr4_A 25 TLGTHIKGHNFKAKVRNYSSAREASLSNNHIPESVYDTLVDVVNKHLPLL 74 (398) T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHTTTCCHHHHHHHHHHHHHTHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 89999999999984135699999987856560889998999999989999 No 4 >>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein interaction, lyase/metal binding protein complex; 3.20A {Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A 1y0v_A 1xfu_A (A:629-777) Probab=41.11 E-value=15 Score=17.78 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 99999999853010103643224566657899999999999998520881 Q gi|254781219|r 113 KLNKILKKSVRNYSRDSGHLNRDVIFHSRYALIRYLEDFYKEIKHTFGNP 162 (200) Q Consensus 113 klnkilkksvrnysrdsghlnrdvifhsryaliryledfykeikhtfgnp 162 (200) .|..|-+.|-...+.||||-..-.--.|--....|++|+|....|-||.. T Consensus 15 ~L~sIrrSs~~~~~~DS~~KDE~~K~esvkkiagy~~DYYN~AN~~~~~E 64 (149) T 1xfx_A 15 NLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANHIFSQE 64 (149) T ss_dssp HHHHHHTTSSCCSSCSSCCTTHHHHHHHHHHHHHHHHHHSCTTGGGSCHH T ss_pred HHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH T ss_conf 88999864262256235652223345459999766887426323422312 No 5 >>1q5z_A SIPA, SIPA; cell invasion; 1.80A {Salmonella typhimurium} (A:) Probab=29.65 E-value=39 Score=14.86 Aligned_cols=42 Identities=31% Similarity=0.570 Sum_probs=28.7 Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999976540643698728995103677999999997535777 Q gi|254781219|r 44 RDKIIELRRKFAKENGLKTVTEVCPKPKDITYSLSHFIEGLIESERSK 91 (200) Q Consensus 44 rdkiielrrkfakenglktvtevcpkpkdityslshfiegliesersk 91 (200) |.|.-|.-+.|+.|.||. |-.+...|-+|....|+|+.+.-. T Consensus 123 rekLae~Alqf~REAgLt------~lk~etdylls~~LDGii~D~swR 164 (177) T 1q5z_A 123 KEKLAEIALQFAREAGLT------RLKGETDYVLSNVLDGLIGDGSWR 164 (177) T ss_dssp HHHHHHHHHHHHHHHCTT------TTGGGSCHHHHHHHHHHSTTCGGG T ss_pred HHHHHHHHHHHHHHCCCC------CCCCCCCHHHHHHHHHHHCCHHHH T ss_conf 999999999999970877------345762289998887764132243 No 6 >>2g3v_A CAG pathogenicity island protein 13; pathogenicity island, type IV secretion system, unknown function; 2.30A {Helicobacter pylori} (A:1-170) Probab=22.76 E-value=51 Score=14.03 Aligned_cols=75 Identities=35% Similarity=0.365 Sum_probs=38.1 Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHCCCCCHHHHHH----HHHHHHHHHHHHHHHH Q ss_conf 999975357777764121579987636888999999-99998530101036432245666----5789999999999999 Q gi|254781219|r 81 IEGLIESERSKITEKFKPLAVAKVVSDELLHDKLNK-ILKKSVRNYSRDSGHLNRDVIFH----SRYALIRYLEDFYKEI 155 (200) Q Consensus 81 ieglieserskitekfkplavakvvsdellhdklnk-ilkksvrnysrdsghlnrdvifh----sryaliryledfykei 155 (200) ||.|-|.|--...||-|-..-.|...|-.-....|| .|.|..|||..|- |.||-. .--...|.||.--.|. T Consensus 24 ieslqenellntdekkkiidqikt~hdffkq~htnkgaldkvlrny~kdy----raviksigvdkfkkvyrlleset~el 99 (170) T 2g3v_A 24 IESLQENELLNTDEKKKIIDQIKTXHDFFKQXHTNKGALDKVLRNYXKDY----RAVIKSIGVDKFKKVYRLLESETXEL 99 (170) T ss_dssp TTGGGTCCBCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSCH----HHHHHHTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHCHHHHHHHHHHHHHHHHHH T ss_conf 99888633317526888999999899999998546425999999999999----99999835688999999998889999 Q ss_pred HHHC Q ss_conf 8520 Q gi|254781219|r 156 KHTF 159 (200) Q Consensus 156 khtf 159 (200) -|.. T Consensus 100 lhai 103 (170) T 2g3v_A 100 LHAI 103 (170) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9998 No 7 >>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum} (A:) Probab=20.86 E-value=35 Score=15.13 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=17.3 Q ss_pred HHHHHHHHHHHHHHHHCHHHHHH Q ss_conf 99999999999765406436987 Q gi|254781219|r 43 LRDKIIELRRKFAKENGLKTVTE 65 (200) Q Consensus 43 lrdkiielrrkfakenglktvte 65 (200) .|.|+-.---+||.++|...+|. T Consensus 21 vR~kvr~~~E~~Are~G~~~IT~ 43 (63) T 2kru_A 21 VRKKVRKNTDNYAREIGEPVVTA 43 (63) T ss_dssp HHHHHHHHHHHHHHHHTCSEECH T ss_pred HHHHHHHHHHHHHHHCCCCEECH T ss_conf 79999999999999849997769 No 8 >>2obe_A Hexon, PII; trimer, double-barrel subunit, viral jellyroll, base, hypervariable tower, viral protein; 2.10A {Simian adenovirus 25} PDB: 1p2z_A* 1p30_A 2bvi_F (A:390-400,A:437-468) Probab=18.98 E-value=56 Score=13.74 Aligned_cols=27 Identities=48% Similarity=0.908 Sum_probs=16.5 Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 96215799-9998887899999999886418011113 Q gi|254781219|r 1 MEIDLQKQ-FKNYLHEDVKFYLDKWCEALYSPESYSN 36 (200) Q Consensus 1 meidlqkq-fknylhedvkfyldkwcealyspesysn 36 (200) |||.||.. ++.+|-..| |+|-|.+|.- T Consensus 15 mEiNl~ANLwr~FLysNV---------alYLPD~~K~ 42 (43) T 2obe_A 15 MEINIQANLWRNFLYANV---------ALYLPDSYKY 42 (43) T ss_dssp EECCHHHHHHHHHHHHHT---------GGGSCGGGCB T ss_pred EEECHHHHHHHHHHHHHH---------HHHCCCCCCC T ss_conf 777377888877888877---------8766744544 No 9 >>2g7j_A Putative cytoplasmic protein; STR72, structure, autostructure, structural genomics, PSI, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:) Probab=18.37 E-value=37 Score=15.01 Aligned_cols=20 Identities=40% Similarity=0.595 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 45666578999999999999 Q gi|254781219|r 135 DVIFHSRYALIRYLEDFYKE 154 (200) Q Consensus 135 dvifhsryaliryledfyke 154 (200) .--|.||.+|-|||...+.+ T Consensus 93 pHGFsSR~~L~ryl~~~Fg~ 112 (124) T 2g7j_A 93 PHGFSSRIALERYLNGLFGD 112 (124) T ss_dssp EECCSCHHHHHHHHHHHHTC T ss_pred CCCCCHHHHHHHHHHHHHCC T ss_conf 85623699999999997467 No 10 >>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} (A:1-85) Probab=17.59 E-value=36 Score=15.12 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=0.0 Q ss_pred HHHCCHHHHHHHHHH Q ss_conf 420304899988752 Q gi|254781219|r 164 DALSPHISELADEIH 178 (200) Q Consensus 164 dalsphiseladeih 178 (200) |||.|+||+-+-++| T Consensus 12 ~aLeP~is~~t~~~H 26 (85) T 1pl4_A 12 GALEPHINAQIMQLH 26 (85) T ss_dssp TTTTTTSCHHHHHHH T ss_pred CCCCCCCCHHHHHHH T ss_conf 535552799999999 Done!