Query gi|254781219|ref|YP_003065632.1| hypothetical protein CLIBASIA_05630 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 200
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:52:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781219.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8t_A Calmodulin-sensitive ad 65.4 7.5 0.00032 18.7 4.8 87 76-163 320-426 (510)
2 1xfx_A Calmodulin-sensitive ad 39.5 11 0.00048 17.5 1.8 86 76-162 587-692 (777)
3 1tt5_A APPBP1, amyloid protein 28.1 29 0.0012 14.7 4.1 15 141-155 422-436 (531)
4 1q5z_A SIPA, SIPA; cell invasi 27.4 30 0.0012 14.6 4.0 42 44-91 123-164 (177)
5 2peq_A ORF134; helix bundle, p 24.4 34 0.0014 14.2 3.4 28 22-57 54-81 (134)
6 2py8_A Hypothetical protein RB 21.4 38 0.0016 13.8 3.7 28 22-57 54-81 (147)
7 2kru_A Light-independent proto 21.0 25 0.001 15.2 0.9 23 43-65 21-43 (63)
8 3ka1_A RBCX protein; chaperone 19.6 42 0.0018 13.6 3.1 14 43-56 67-80 (126)
9 2l09_A ASR4154 protein; proto- 19.4 24 0.00099 15.3 0.5 23 43-65 20-42 (62)
10 2g7j_A Putative cytoplasmic pr 17.9 27 0.0011 14.9 0.5 21 135-155 93-113 (124)
No 1
>1k8t_A Calmodulin-sensitive adenylate cyclase; edema factor, adenylyl cyclase, anthrax, toxin, lyase; 2.60A {Bacillus anthracis} SCOP: e.41.1.1 PDB: 1k90_A* 1k93_A 1lvc_A* 1s26_A* 1sk6_A* 1pk0_A*
Probab=65.35 E-value=7.5 Score=18.72 Aligned_cols=87 Identities=30% Similarity=0.405 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHH-------H--HHHH-------HHHCHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCHHCCCCCHH
Q ss_conf 7999999997535-------7--7777-------64121579987----6368889999999999853010103643224
Q gi|254781219|r 76 SLSHFIEGLIESE-------R--SKIT-------EKFKPLAVAKV----VSDELLHDKLNKILKKSVRNYSRDSGHLNRD 135 (200)
Q Consensus 76 slshfiegliese-------r--skit-------ekfkplavakv----vsdellhdklnkilkksvrnysrdsghlnrd 135 (200)
+++.||+--|..+ | +||. |--.|...||+ .|.|| -..|..|+|.+-...++||||-..-
T Consensus 320 ~~~~fi~~ni~~~~y~~y~nr~y~~~~~~n~~~i~w~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (510)
T 1k8t_A 320 MTGRFIEKNITGKDYLYYFNRSYNKIAPGNKAYIEWTDPITKAKINTIPTSAEF-IKNLSSIRRSSNVGVYKDSGDKDEF 398 (510)
T ss_dssp HHHHHHHHHTGGGTBCCCCSSCCCSSCCCSSCCCCEECTTTCCEECSCCCHHHH-HHHHHHHHHHHCSCSBCCSSCSSHH
T ss_pred HHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCCEEECCCCCCHHHHCCCCCHHHH-HHHHHHHHHHCCCEEEECCCCCHHH
T ss_conf 899999973116763898404566644665241663688523232058876999-9888999864262267235652123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 5666578999999999999985208815
Q gi|254781219|r 136 VIFHSRYALIRYLEDFYKEIKHTFGNPA 163 (200)
Q Consensus 136 vifhsryaliryledfykeikhtfgnpa 163 (200)
.--.|--.+-.|++|+|....|-||...
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (510)
T 1k8t_A 399 AKKESVKKIAGYLSDYYNSANHIFSQEK 426 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGCCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 3354599987668874263334223110
No 2
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein interaction, lyase/metal binding protein complex; 3.20A {Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A 1y0v_A 1xfu_A
Probab=39.45 E-value=11 Score=17.49 Aligned_cols=86 Identities=30% Similarity=0.402 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHH-------H--HHHH-------HHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCHHCCCCCHH
Q ss_conf 7999999997535-------7--7777-------641215799876----368889999999999853010103643224
Q gi|254781219|r 76 SLSHFIEGLIESE-------R--SKIT-------EKFKPLAVAKVV----SDELLHDKLNKILKKSVRNYSRDSGHLNRD 135 (200)
Q Consensus 76 slshfiegliese-------r--skit-------ekfkplavakvv----sdellhdklnkilkksvrnysrdsghlnrd 135 (200)
.+..||+--|..+ | +||. |--.|...|++- |.|| -..|..|+|-+-...++||||-..-
T Consensus 587 ~~~~fi~~ni~~~gy~~y~NR~ynk~~~~n~~~i~w~~p~~~~~~~~ip~~~e~-~~~~~~~~~s~~~~~~~~s~~~~~~ 665 (777)
T 1xfx_A 587 MTGRFIEKNITGKDYLYYFNRSYNKIAPGNKAYIEWTDPITKAKINTIPTSAEF-IKNLSSIRRSSNVGVYKDSGDKDEF 665 (777)
T ss_dssp HHHHHHHHHTTTTTBCCCCCTTBTTTBTTTTBCBCCCCHHHHTTTTSCCCHHHH-HHHHHHHHTTSSCCSSCSSCCTTHH
T ss_pred HHHHHHHHHCCCCCEEEEEEHHHHHHCCCCCCEEECCCCCCHHHHHCCCCHHHH-HHHHHHHHHHCCCEEEECCCCCHHH
T ss_conf 999999972226763898414456634665241663688523233058876999-9988999864262266235652123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 566657899999999999998520881
Q gi|254781219|r 136 VIFHSRYALIRYLEDFYKEIKHTFGNP 162 (200)
Q Consensus 136 vifhsryaliryledfykeikhtfgnp 162 (200)
.--.|--.+-.|++|+|....|-||..
T Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (777)
T 1xfx_A 666 AKKESVKKIAGYLSDYYNSANHIFSQE 692 (777)
T ss_dssp HHHHHHHHHHHHHHHHSCTTGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 335459999766887426323422312
No 3
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=28.11 E-value=29 Score=14.69 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 789999999999999
Q gi|254781219|r 141 RYALIRYLEDFYKEI 155 (200)
Q Consensus 141 ryaliryledfykei 155 (200)
-|...|-+..|.++-
T Consensus 422 l~~~~~a~~~f~~~~ 436 (531)
T 1tt5_A 422 LYLMLRAVDRFHKQQ 436 (531)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999984
No 4
>1q5z_A SIPA, SIPA; cell invasion; 1.80A {Salmonella typhimurium} SCOP: a.196.1.1
Probab=27.40 E-value=30 Score=14.60 Aligned_cols=42 Identities=31% Similarity=0.570 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999976540643698728995103677999999997535777
Q gi|254781219|r 44 RDKIIELRRKFAKENGLKTVTEVCPKPKDITYSLSHFIEGLIESERSK 91 (200)
Q Consensus 44 rdkiielrrkfakenglktvtevcpkpkdityslshfiegliesersk 91 (200)
|.|.-|.-+.|+.|.||. |-.+...|-+|....|+|+.+.-.
T Consensus 123 rekLae~Alqf~REAgLt------~lk~etdylls~~LDGii~D~swR 164 (177)
T 1q5z_A 123 KEKLAEIALQFAREAGLT------RLKGETDYVLSNVLDGLIGDGSWR 164 (177)
T ss_dssp HHHHHHHHHHHHHHHCTT------TTGGGSCHHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHHHHHHHHCCCC------CCCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 999999999999970877------345762289998887764132243
No 5
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=24.38 E-value=34 Score=14.24 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=15.3
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999886418011113678878999999999997654
Q gi|254781219|r 22 DKWCEALYSPESYSNTYREQKLRDKIIELRRKFAKE 57 (200)
Q Consensus 22 dkwcealyspesysntyreqklrdkiielrrkfake 57 (200)
|.||++|..- .+.|--.|++.|..+|++
T Consensus 54 d~fl~~L~~e--------~~~LA~RIm~vR~~~a~e 81 (134)
T 2peq_A 54 DLYLEAMMLE--------NKELVLRILTVRENLAEG 81 (134)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------CHHHHHHHHHHHHHHHHH
T ss_conf 9999999867--------989999999999999999
No 6
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=21.43 E-value=38 Score=13.85 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=13.0
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999886418011113678878999999999997654
Q gi|254781219|r 22 DKWCEALYSPESYSNTYREQKLRDKIIELRRKFAKE 57 (200)
Q Consensus 22 dkwcealyspesysntyreqklrdkiielrrkfake 57 (200)
|.||++|+.-. +.|--.|++.|.-+|++
T Consensus 54 d~fL~~L~~e~--------~eLAlRIm~vRehlae~ 81 (147)
T 2py8_A 54 ETFLTELLDEN--------KELVLRILAVREDIAES 81 (147)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--------HHHHHHHHHHHHHHHHH
T ss_conf 99999998669--------99999999999999999
No 7
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=20.97 E-value=25 Score=15.15 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 99999999999765406436987
Q gi|254781219|r 43 LRDKIIELRRKFAKENGLKTVTE 65 (200)
Q Consensus 43 lrdkiielrrkfakenglktvte 65 (200)
.|.++...--+||.++|...+|.
T Consensus 21 VR~kar~~~E~~Are~G~~~IT~ 43 (63)
T 2kru_A 21 VRKKVRKNTDNYAREIGEPVVTA 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHTCSEECH
T ss_pred HHHHHHHHHHHHHHHCCCCEECH
T ss_conf 89999999999999949996669
No 8
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1}
Probab=19.56 E-value=42 Score=13.59 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999765
Q gi|254781219|r 43 LRDKIIELRRKFAK 56 (200)
Q Consensus 43 lrdkiielrrkfak 56 (200)
|--.|++.|..+|+
T Consensus 67 la~RIm~vR~~lae 80 (126)
T 3ka1_A 67 LGFRILTVREHLAE 80 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 9
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=19.41 E-value=24 Score=15.29 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 99999999999765406436987
Q gi|254781219|r 43 LRDKIIELRRKFAKENGLKTVTE 65 (200)
Q Consensus 43 lrdkiielrrkfakenglktvte 65 (200)
.|.++...--+||.++|...+|.
T Consensus 20 VR~k~r~~~E~~Are~G~~~IT~ 42 (62)
T 2l09_A 20 ARSQAKARIEQLARQAEQDIVTP 42 (62)
T ss_dssp GHHHHHHHHHHHHHHTTCSEECH
T ss_pred HHHHHHHHHHHHHHHCCCCEECH
T ss_conf 89999999999999959997669
No 10
>2g7j_A Putative cytoplasmic protein; STR72, structure, autostructure, structural genomics, PSI, protein structure initiative; NMR {Salmonella typhimurium LT2} SCOP: d.198.5.1
Probab=17.87 E-value=27 Score=14.88 Aligned_cols=21 Identities=38% Similarity=0.524 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 456665789999999999999
Q gi|254781219|r 135 DVIFHSRYALIRYLEDFYKEI 155 (200)
Q Consensus 135 dvifhsryaliryledfykei 155 (200)
.--|.||.+|-|||...+.+.
T Consensus 93 pHGFsSR~~L~ryl~~mFg~~ 113 (124)
T 2g7j_A 93 PHGFSSRIALERYLNGLFGDE 113 (124)
T ss_dssp EECCSCHHHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHHCCC
T ss_conf 867346999999999984665
Done!