RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781219|ref|YP_003065632.1| hypothetical protein
CLIBASIA_05630 [Candidatus Liberibacter asiaticus str. psy62]
(200 letters)
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid
synthase, herbicide, sulfonylurea, thiamin diphosphate,
FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} (A:1-258)
Length = 258
Score = 31.4 bits (70), Expect = 0.085
Identities = 5/47 (10%), Positives = 11/47 (23%), Gaps = 2/47 (4%)
Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFVVN 189
+ + FG P A+ P + + +
Sbjct: 87 IFNEMMSRQN--VDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQG 131
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A* (A:1-174)
Length = 174
Score = 29.0 bits (64), Expect = 0.51
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFV 187
+ + LE +K +G D+L+ L + +
Sbjct: 8 YIAKTLESAG--VKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHE 50
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
1zpd_A* (A:1-180)
Length = 180
Score = 28.3 bits (62), Expect = 0.82
Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 2/44 (4%)
Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQF 186
L L +KH F D + L +
Sbjct: 8 YLAERLVQIG--LKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCN 49
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} (A:1-186)
Length = 186
Score = 27.8 bits (61), Expect = 0.97
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCF 182
AL+ L D + FG + + + + I
Sbjct: 17 ALLSRLRDHG--VGKVFGVVGREAASILFDEVEGIDFVLT 54
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine
pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A
{Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B*
3d7k_A* (A:1-181)
Length = 181
Score = 27.9 bits (61), Expect = 1.0
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFVVNPSEA 193
++R L ++H FG HI + + + + A
Sbjct: 9 LVVRTLIKAG--VEHLFGLHGA----HIDTIFQACLDHDVPIIDTRHEAAA 53
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-
1-carboxylate synthase; menaquinone, THDP, metal, Mg,
vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A
{Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A*
2jla_A* (A:1-195)
Length = 195
Score = 27.9 bits (61), Expect = 1.0
Identities = 4/40 (10%), Positives = 10/40 (25%), Gaps = 2/40 (5%)
Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCF 182
++ L ++H P + A+
Sbjct: 13 VILEALTRHG--VRHICIAPGSRSTLLTLAAAENSAFIHH 50
>1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI,
topoisomerase, helix- turn-helix, CAP, hydrolase; 2.38A
{Lechevalieria aerocolonigenes} (A:1-170)
Length = 170
Score = 27.9 bits (62), Expect = 1.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 48 IELRRKFAKENGLKTVTEVCPKPKDITYSLS 78
I L R+F +G +T E+ D +S+S
Sbjct: 71 INLHREFQFGDGFETDYEIAGVQVDCKFSMS 101
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid
synthase, thiamin diphosphate, lyase; HET: PGE HE3;
2.00A {Klebsiella pneumoniae} (A:1-186)
Length = 186
Score = 27.5 bits (60), Expect = 1.2
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQ 185
++ LE + ++ FG P + L D
Sbjct: 16 LVVSQLEA--QGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRH 56
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase,
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus} (A:1-183)
Length = 183
Score = 27.6 bits (60), Expect = 1.2
Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 2/44 (4%)
Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQF 186
L L +KH F D + +L
Sbjct: 8 YLAERLVQIG--LKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCN 49
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible
solutes, cation-PI interactions, non-classical hydrogen
bonds; 1.80A {Archaeoglobus fulgidus dsm 4304}
(A:111-208)
Length = 98
Score = 27.3 bits (61), Expect = 1.5
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 51 RRKFAKENGLKTVTEVCPKPKDITYSLSH 79
R +A+ENG++ ++++ + +
Sbjct: 6 RADWAEENGVEKISDLAEFADQLVFGSDP 34
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A
{Anabaena SP} (A:1-128)
Length = 128
Score = 26.7 bits (58), Expect = 2.1
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 162 PADALSPHISELADEIHTTCFTLQFVVN 189
DAL I ++H +V N
Sbjct: 46 GYDALEKAIDAETMKLHHDKHHAAYVNN 73
>3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme,
xanthophyll cycle, non photochemical quenching, NPQ,
antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana}
PDB: 3cqr_A (A:)
Length = 185
Score = 26.3 bits (57), Expect = 2.7
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 11 NYLHEDVKFYLDKWCEALYSPESYSNTY---REQKLRDKIIELRRKFAKENGL------K 61
++ + + + + Y R L + II K AK G +
Sbjct: 109 KIENKPEDYIFVYYRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIGRDFSTFIR 168
Query: 62 TVTEVCPKPKD 72
T P+P+
Sbjct: 169 TDNTCGPEPRS 179
>1k8t_A Calmodulin-sensitive adenylate cyclase; edema factor,
adenylyl cyclase, anthrax, toxin, lyase; 2.60A {Bacillus
anthracis} (A:341-479)
Length = 139
Score = 25.9 bits (56), Expect = 4.3
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 112 DKLNKILKKSVRNYSRDSGHLNRDVIFHSRYALIRYLEDFYKEIKHTFG 160
L+ I + S +DSG + S + YL D+Y H F
Sbjct: 35 KNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANHIFS 83
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} (A:)
Length = 68
Score = 25.6 bits (56), Expect = 4.4
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 35 SNTYREQKLRDKIIELRR---KFAKENGLKTVTEVCPKPK 71
+N+Y E K + I ELR+ ++ K + VC +
Sbjct: 20 ANSYMESKCQAVIQELRKCCAQYPKGR-----SVVCSGFE 54
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A
{Mus musculus} (A:)
Length = 124
Score = 25.5 bits (56), Expect = 4.5
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 70 PKDITYSLSHFIE----GLIESERSKITEKFKPL-----AVAKVVSDE---LLHDKLNKI 117
P +I + L+ +IE + + + T + L VS E LL L +I
Sbjct: 28 PMEIRHLLAQWIETQDWEVASNNETMATILLQNLLIQLDEQLGRVSKEKNLLLIHNLKRI 87
Query: 118 LKKSVRNYSRDSGHLNRDVIFH 139
K + + H+ VI +
Sbjct: 88 RKVLQGKFHGNPMHVAV-VISN 108
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL315C ATP11;
half barrel, chaperone; HET: P6G; 1.40A {Candida
glabrata cbs 138} (A:)
Length = 299
Score = 25.6 bits (56), Expect = 4.8
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 22/152 (14%)
Query: 29 YSPESYSNTYRE------------------QKLRDKIIELRRKFAKENGLKTVTEVCPKP 70
+ S + Y+E ++L D+I E +++ K + L+ + +
Sbjct: 8 HHHSSGEDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAG 67
Query: 71 KDITYSLSHFIEGLIESERSKITEKFKPLAVAKVVSDELLHDKLNKILKKSVRNYSRDSG 130
I + H + K K + D L DK+ + K+ V R
Sbjct: 68 SRIHTNKEHKTTKMSNKSNEKSGNVLPKDKPYKTLDDYLKLDKIKDLSKQEVEFLWRAK- 126
Query: 131 HLNRDVIFHSRYALIRYLEDFYKEIKHTFGNP 162
NRD S A++ Y++ F K+ NP
Sbjct: 127 WSNRD---DSLVAVVPYVKTFQGMYKYAVKNP 155
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A
{Perkinsus marinus} (A:1-117)
Length = 117
Score = 25.5 bits (55), Expect = 5.8
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 164 DALSPHISELADEIHTTCFTLQFVVN 189
+AL PH+S H +V
Sbjct: 43 NALEPHMSAETLTYHHDKHHQTYVDT 68
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural
genomics center for infectious disease, GRAM-negative
bacteria; 1.95A {Anaplasma phagocytophilum HZ} (A:1-113)
Length = 113
Score = 25.0 bits (54), Expect = 6.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 162 PADALSPHISELADEIH 178
P + L P+IS + H
Sbjct: 29 PYEGLEPYISSHLLDRH 45
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP,
structural genomics, structural genomics consortium,
SGC, metal binding protein; 1.80A {Homo sapiens} (A:)
Length = 144
Score = 25.0 bits (54), Expect = 7.2
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 18 KFYLDKWCEALYSPESYSNTYREQKLRDKIIELRRKFAKENG 59
F+ C A + Y N+ Q R+KI +L +G
Sbjct: 104 AFFRQHGCTANDANTKY-NSRAAQMYREKIRQLGSAALARHG 144
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A
{Bacillus anthracis} (A:1-104)
Length = 104
Score = 24.6 bits (53), Expect = 8.8
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 162 PADALSPHISELADEIHTTCFTLQFVVN 189
D L P+I IH +V N
Sbjct: 21 DYDELEPYIDSNTLSIHHGKHHATYVNN 48
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein
3; arfgap domain, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:)
Length = 149
Score = 24.7 bits (53), Expect = 9.0
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 18 KFYLDKWCEALYSPESYSNTYREQKLRDKIIELRRKFAKE 57
F+ C + Y N+ Q R+KI
Sbjct: 96 SFFHQHGCSTNDTNAKY-NSRAAQLYREKIKS--LASQAT 132
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial,
MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A
{Staphylococcus aureus} (A:1-113,A:178-225,A:325-347)
Length = 184
Score = 24.8 bits (54), Expect = 9.3
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 147 YLEDFYKEIKHTFGNPADALSPHISELADEIHTT 180
++E+ YKE ++ + ++ EI T
Sbjct: 10 FIENMYKECH----YETQIINKRLHDIELEIKET 39
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase;
1.10A {Saccharomycopsis fibuligera} (A:1-35,A:341-492)
Length = 187
Score = 24.5 bits (53), Expect = 9.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 141 RYALIRYLEDFYKEIKHTFGNP 162
+ A+ RY ED Y + GNP
Sbjct: 35 QAAIGRYPEDVYNGDGSSEGNP 56
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.318 0.135 0.387
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,540,713
Number of extensions: 70715
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 51
Length of query: 200
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 116
Effective length of database: 2,116,429
Effective search space: 245505764
Effective search space used: 245505764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)