BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781220|ref|YP_003065633.1| hypothetical protein
CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62]
         (130 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040897|gb|ACT57693.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120684|gb|ADV02507.1| hypothetical protein SC1_gp135 [Liberibacter phage SC1]
 gi|317120726|gb|ADV02548.1| hypothetical protein SC2_gp135 [Liberibacter phage SC2]
 gi|317120787|gb|ADV02608.1| hypothetical protein SC2_gp135 [Liberibacter phage SC2]
 gi|317120828|gb|ADV02649.1| hypothetical protein SC1_gp135 [Liberibacter phage SC1]
          Length = 130

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI 60
           MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI
Sbjct: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI 60

Query: 61  RTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQE 120
           RTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQE
Sbjct: 61  RTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQE 120

Query: 121 HKEDYYASQI 130
           HKEDYYASQI
Sbjct: 121 HKEDYYASQI 130


>gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039799|gb|ACT56595.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120736|gb|ADV02558.1| hypothetical protein SC2_gp185 [Liberibacter phage SC2]
 gi|317120797|gb|ADV02618.1| hypothetical protein SC2_gp185 [Liberibacter phage SC2]
          Length = 123

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 15/134 (11%)

Query: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEK---LERALKTSKKLIHFRD 57
           MG LK ++ +EI  N+ F S  N     +P+ + E+++ E    L+  +     ++    
Sbjct: 1   MGALKNHFHDEINENFYFHSHPNA----DPDISIEMQISENQRYLDEEISQCNAVVDVFK 56

Query: 58  RTIRTHILE-DLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEH 116
           R+  T + + D ++++   I L +A  + L+  +    E W    E   D E  E   EH
Sbjct: 57  RSDSTILDKLDAMDDLKTYISLLQATAKNLKSLL---KEYW----EESLDGEDDEEIYEH 109

Query: 117 PDQEHKEDYYASQI 130
           PDQEH+EDYYA+QI
Sbjct: 110 PDQEHREDYYANQI 123


>gi|317120693|gb|ADV02516.1| hypothetical protein SC1_gp185 [Liberibacter phage SC1]
 gi|317120837|gb|ADV02658.1| hypothetical protein SC1_gp185 [Liberibacter phage SC1]
          Length = 123

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 15/134 (11%)

Query: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEK---LERALKTSKKLIHFRD 57
           MG LK ++ +EI  N+ F S  N     +P+ + E+++ E    L+  +     ++    
Sbjct: 1   MGALKNHFHDEINENFYFHSHPNA----DPDISIEMQISENQRYLDEEISQCNAVVDVFK 56

Query: 58  RTIRTHILE-DLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEH 116
           R+  T + + D ++++   I L +A  + L+  +    E W    E   D E  E   EH
Sbjct: 57  RSDSTILDKLDAVDDLKTYISLLQATAKNLKSLL---KEYW----EESLDGEDDEEIYEH 109

Query: 117 PDQEHKEDYYASQI 130
           PDQEH+EDYYA+QI
Sbjct: 110 PDQEHREDYYANQI 123


>gi|315121961|ref|YP_004062450.1| hypothetical protein CKC_01055 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|315122929|ref|YP_004063418.1| hypothetical protein CKC_05925 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495363|gb|ADR51962.1| hypothetical protein CKC_01055 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496331|gb|ADR52930.1| hypothetical protein CKC_05925 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 128

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 14/136 (10%)

Query: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEV-----EVIEKLERALKTSKKLIHF 55
           MG+LKQ+Y+EEIEANYEF    NPR  ++PE    +     E+I  L++       L+  
Sbjct: 1   MGKLKQHYMEEIEANYEFNCLNNPRFNLDPEPEPSIKEEVEELIRSLDQRFLWCCDLVRD 60

Query: 56  RDRTIRTHILE-DLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCS 114
             R+  T + + D +EE+   + + +    RLE  + E  E      E            
Sbjct: 61  LQRSDYTILDKLDAMEEMRMYLSVLRPTANRLEDLLKESWEEPEKEPEEEP--------R 112

Query: 115 EHPDQEHKEDYYASQI 130
           EHPDQEH + YYA QI
Sbjct: 113 EHPDQEHADAYYADQI 128


>gi|327192599|gb|EGE59544.1| transcriptional regulator domain-containing protein [Rhizobium etli
           CNPAF512]
          Length = 511

 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 32/94 (34%)

Query: 6   QYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHIL 65
            ++ + I   + F   +  R+    E   E+  I++  R    S  +     R +   I 
Sbjct: 212 DHFEDGIGGMFAFQDHITERVASTVEPTIEIAEIQRSRRDRPNSPAVYDLYLRALAAIID 271

Query: 66  EDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRL 99
           E +        +L +A     E  +   +  W L
Sbjct: 272 ESIENNAIAYGLLQQALAIEPENPMILSHAAWAL 305


>gi|225556604|gb|EEH04892.1| tubulin-tyrosine ligase [Ajellomyces capsulatus G186AR]
          Length = 1188

 Score = 35.1 bits (79), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 15/118 (12%)

Query: 4   LKQYYLEEIEANYEFLSAVNPRMG--IEPESNYEVEVIEKLERALKTSKKLIHFRDRTIR 61
           ++++YL    +N+      +  +   ++P  ++E++  E L+ AL  + +L         
Sbjct: 812 IRKHYLSNSVSNW-VAKHPDSILNAHVKPAVHFELDYAEFLDEALVEAYELQESFQANEG 870

Query: 62  TH-------ILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCEN 112
                    IL+  + +  R I L        E  + E  E W       ED E  EN
Sbjct: 871 KEEAEKEWWILKPGMSDRGRGIRLF-----NSESALREIFEGWEDDQPDSEDGEDSEN 923


>gi|145489920|ref|XP_001430961.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398063|emb|CAK63563.1| unnamed protein product [Paramecium tetraurelia]
          Length = 425

 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 9   LEEIEANYEFLSAVNP---RMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHIL 65
           LE I  NY+F         +  I+     EV+V +KL++  +  +  I   D+  +    
Sbjct: 184 LESILENYQFHQGRYVGLIKSFIDTLQGTEVQVTQKLDQQTQEKQLFIQTVDKATKKFSA 243

Query: 66  EDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQEH 121
           ED              H  +L L+   + E      + R + +G +   E   QEH
Sbjct: 244 ED-----QEYARNVDGHDYKLFLQELYEKEYQSGFAQNRFNEKGQKLVYESQAQEH 294


>gi|325087612|gb|EGC40922.1| tubulin-tyrosine ligase [Ajellomyces capsulatus H88]
          Length = 1206

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 15/118 (12%)

Query: 4   LKQYYLEEIEANYEFLSAVNPRMG--IEPESNYEVEVIEKLERALKTSKKLIHFRDRTIR 61
           ++++YL    +N+      +  +   ++P  ++E++  E L+ AL  + +L         
Sbjct: 830 IRKHYLSNSVSNW-VAKHPDSILDAHVKPAVHFELDYAEFLDEALVEAYELQESFQANEG 888

Query: 62  TH-------ILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCEN 112
                    IL+  + +  R I L        E  + E  E W       ED E  EN
Sbjct: 889 KEEAEKEWWILKPGMSDRGRGIRLF-----NSESALREIFEGWEDDQPDSEDGEDSEN 941


>gi|240281460|gb|EER44963.1| tubulin-tyrosine ligase [Ajellomyces capsulatus H143]
          Length = 1229

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 15/118 (12%)

Query: 4   LKQYYLEEIEANYEFLSAVNPRMG--IEPESNYEVEVIEKLERALKTSKKLIHFRDRTIR 61
           ++++YL    +N+      +  +   ++P  ++E++  E L+ AL  + +L         
Sbjct: 853 IRKHYLSNSVSNW-VAKHPDSILDAHVKPAVHFELDYAEFLDEALVEAYELQESFQANEG 911

Query: 62  TH-------ILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCEN 112
                    IL+  + +  R I L        E  + E  E W       ED E  EN
Sbjct: 912 KEEAEKEWWILKPGMSDRGRGIRLF-----NSESALREIFEGWEDDQPDSEDGEDSEN 964


>gi|224106974|ref|XP_002314329.1| predicted protein [Populus trichocarpa]
 gi|222863369|gb|EEF00500.1| predicted protein [Populus trichocarpa]
          Length = 260

 Score = 34.3 bits (77), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 42/98 (42%)

Query: 9   LEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILEDL 68
             EI+ N+  LS    R+    +SN + + +E+L   +K  K+LI   DR I+    ++ 
Sbjct: 15  HGEIKDNFRALSNGFQRLNNIKDSNRQSKQLEELTGRMKECKRLIKEFDREIKVEESKNP 74

Query: 69  IEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEARED 106
            E   ++    ++  + L   +         LD  R +
Sbjct: 75  PEVNKQLNDEKQSMIKELNSYVQLRKTYMNSLDNKRVE 112


>gi|171679545|ref|XP_001904719.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939398|emb|CAP64626.1| unnamed protein product [Podospora anserina S mat+]
          Length = 947

 Score = 34.0 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 1/106 (0%)

Query: 20  SAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLA 79
           +AVNP +  E + +   E IE  +  +           R+     +EDL++EV  +I   
Sbjct: 383 NAVNPALVTEIDDDLVKEAIENWDSVVVDPTLDEVLGKRSDGEKEVEDLLDEVTDMIETL 442

Query: 80  KAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQEHKEDY 125
            + +R   L +    + +   D    D     N S+ P +E    Y
Sbjct: 443 SSFQRNRNLTVPTSQDRYS-ADPNNGDMLRNGNASQQPSEEEMMTY 487


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.128    0.337 

Lambda     K      H
   0.267   0.0379    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 864,499,118
Number of Sequences: 14124377
Number of extensions: 19335672
Number of successful extensions: 92662
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 92632
Number of HSP's gapped (non-prelim): 57
length of query: 130
length of database: 4,842,793,630
effective HSP length: 96
effective length of query: 34
effective length of database: 3,486,853,438
effective search space: 118553016892
effective search space used: 118553016892
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 75 (33.6 bits)