RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781220|ref|YP_003065633.1| hypothetical protein
CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62]
(130 letters)
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A
(A:)
Length = 186
Score = 31.2 bits (69), Expect = 0.044
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 29 EPESNYEVEVIEKLERALKTSKK-----LIHFRDRTIRTHILEDLIEEVNRII 76
+ E E + + L ++ D+ I L+ +E+ I
Sbjct: 130 KRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFI 182
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt
transport, hydrolase, inner membrane, membrane,
nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
(A:)
Length = 266
Score = 26.4 bits (58), Expect = 1.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 21 AVNPRMGI--EPESNYEVEVIEKLERALKTSKKLIHFRDRTI--RTHILEDLIEEVNRII 76
P + I EP + E L R ++ K L +T+ +H +E +I V+R++
Sbjct: 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL----GKTVILISHDIETVINHVDRVV 209
Query: 77 VLAK 80
VL K
Sbjct: 210 VLEK 213
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470;
putative iron chelatin ABC transporter, nucleotide
binding domain; 2.40A {Haemophilus influenzae} (C:1-214)
Length = 214
Score = 26.0 bits (57), Expect = 1.8
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 29 EPESNYEVEVIEKLERALKTSKKLIHFRDRTI--RTHILEDLIEEVNRIIVLAKAHKRRL 86
EP S ++ + + L L ++ T+ TH ++ N+ ++L +K+
Sbjct: 154 EPTSALDLANQDIVLSLLI---DLAQSQNMTVVFTTHQPNQVVAIANKTLLL---NKQNF 207
Query: 87 E 87
+
Sbjct: 208 K 208
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural
genomics, joint center for structural genomics, JCSG;
2.10A {Thermotoga maritima MSB8} (A:1-98,A:164-256)
Length = 191
Score = 25.8 bits (57), Expect = 2.0
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 18 FLSAVNPRMGI--EPESNYEVEVIEKLERALKTSKKLIHFRDRTI--RTHILEDLIEEVN 73
A NPR+ I EP S +V ++ + LK TI +H + ++ +
Sbjct: 94 PEEAGNPRLAILDEPTSGLDVLNAREVRKILKQ----ASQEGLTILVSSHNMLEVEFLCD 149
Query: 74 RIIVLAK 80
RI ++
Sbjct: 150 RIALIHN 156
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown
function, protein structure initiative, PSI-2; 2.51A
{Corynebacterium diphtheriae NCTC13129} (A:1-344)
Length = 344
Score = 25.8 bits (57), Expect = 2.2
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 63 HILEDLIEEVNRIIVLAKA----HKRRLELKIFEDNEVWRLLDEARE 105
+L+ + +EV ++ + HK R +L I + +V RL+D R+
Sbjct: 61 AMLDRIKDEVEILVCINAKDLERHKIRADLGISYEEDVLRLVDVFRD 107
>1g6h_A High-affinity branched-chain amino acid transport
ATP-binding protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} (A:1-92,A:171-257)
Length = 179
Score = 25.0 bits (55), Expect = 4.2
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 18 FLSAVNPRMGI--EPESNYEVEVIEKLERALKTSKKLIHFRDRTI--RTHILEDLIEEVN 73
F + NP+M + EP + + + + + + T H L+ ++ ++
Sbjct: 88 FQTPQNPKMIVMDEPIAGVAPGLAHDIFNHVLE----LKAKGITFLIIEHRLDIVLNYID 143
Query: 74 RIIVLAK 80
+ V+
Sbjct: 144 HLYVMFN 150
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
(A:655-778,A:874-986)
Length = 237
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 21 AVNPRMGI--EPESNYEVEVIEKLERALKTSKKLIHFRDRTI--RTHILEDLIEEVNRII 76
P + + EP + + + + L +ALK + + TH E +
Sbjct: 168 WQRPHLIVLDEPTNYLDRDSLGALSKALKE-------FEGGVIIITHSAEFTKNLTEEVW 220
Query: 77 VLAK 80
+
Sbjct: 221 AVKD 224
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein;
membrane protein; 3.10A {Archaeoglobus fulgidus}
(A:1-228)
Length = 228
Score = 24.5 bits (53), Expect = 5.4
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 29 EPESNYEVEVIEKLERALKTSKKLIHFRDRTI--RTHILEDLIEEVNRIIVLAK 80
EP S +++ L L+ + D I TH L + + + V+
Sbjct: 152 EPLSAVDLKTKGVLMEELR---FVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex,
cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
(A:1-46,A:247-301,A:416-470)
Length = 156
Score = 24.3 bits (52), Expect = 5.5
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 25 RMGIEPESNYEVEVIEKLERAL 46
+ E E+ ++E R L
Sbjct: 26 KEIKEKNLPLELTLVEASPRVL 47
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
(A:1-249)
Length = 249
Score = 24.4 bits (53), Expect = 6.5
Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 24 PRMGIEPESNYEV-EVIEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAK 80
P G++ + + +++ L + T + TH +E++ ++I++L
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAXIYV-------THFIEEITANFSKILLLKD 238
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein;
ABC-ATPase, ATP-binding cassette, ATPase, transport
protein; 1.45A {Sulfolobus solfataricus} (K:1-243)
Length = 243
Score = 24.1 bits (52), Expect = 6.9
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 29 EPESNYEVEVIEKLERALKTSKKLIHFRDRTI--RTHILEDLIEEVNRIIVLAK 80
EP SN + + + +K ++ T+ +H D+ +R+ VL K
Sbjct: 166 EPFSNLDARMRDSARALVK---EVQSRLGVTLLVVSHDPADIFAIADRVGVLVK 216
>1aor_A Aldehyde ferredoxin oxidoreductase; HET: PTE; 2.30A
{Pyrococcus furiosus} (A:1-238,A:422-605)
Length = 422
Score = 24.0 bits (52), Expect = 7.0
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 66 EDLIEEVNRIIVLAKAHKRRLELKIFEDNEV-WRLLDEAREDCEGCENCSEHPDQEHKED 124
ED ++ RI + + L D+ + R L+E EG +E
Sbjct: 338 EDYLKIGERIWNAERLFNLKAGLDPARDDTLPKRFLEEPMP--EGPNKGHTVRLKEMLPR 395
Query: 125 YYA 127
YY
Sbjct: 396 YYK 398
>3edo_A Flavoprotein, putative Trp repressor binding protein;
YP_193882.1, flavoprotein in complex with FMN,
structural genomics; HET: MSE FMN; 1.20A {Lactobacillus
acidophilus ncfm} (A:)
Length = 151
Score = 23.9 bits (51), Expect = 7.7
Identities = 3/51 (5%), Positives = 13/51 (25%)
Query: 79 AKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQEHKEDYYASQ 129
A+ ++ ++ +V +A + + +
Sbjct: 21 AEKINSEIKDSELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDN 71
>1z47_A CYSA, putative ABC-transporter ATP-binding protein;
alpha/beta motif, beta sandwich, ligand binding protein;
1.90A {Alicyclobacillus acidocaldarius} (A:1-237)
Length = 237
Score = 23.8 bits (51), Expect = 7.7
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 24 PRMGIEPESNYEV-EVIEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAK 80
P I+ + E+ + ++ + + + TH E+ +E +R++VL +
Sbjct: 172 PFAAIDTQIRRELRTFVRQVHDEMGVTSVFV--------THDQEEALEVADRVLVLHE 221
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase,
lyase; 2.2A {Thermus thermophilus} (A:)
Length = 149
Score = 23.8 bits (52), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 9 LEEIEANYEFLSAVNPRMGIEPE---SNYEVEVIEKLERA 45
LEE+EA A +G+ +NYE ++IE +++A
Sbjct: 26 LEELEAL---CEAWGAELGLGVVFRQTNYEGQLIEWVQQA 62
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and
beta protein (A + B), E3 ligase, HECT domain, UBL-
conjugation pathway; HET: MSE; 2.20A {Homo sapiens}
(A:38-125)
Length = 88
Score = 23.6 bits (51), Expect = 9.0
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 54 HFRDRTIRTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEV 96
F + R +I E+ + + + + L I ++E
Sbjct: 5 RFEXKLHRNNIFEESYRRIXS---VKRPDVLKARLWIEFESEK 44
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.135 0.385
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,068,658
Number of extensions: 47986
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 49
Length of query: 130
Length of database: 4,956,049
Length adjustment: 77
Effective length of query: 53
Effective length of database: 2,353,064
Effective search space: 124712392
Effective search space used: 124712392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)