BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781220|ref|YP_003065633.1| hypothetical protein
CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62]
         (130 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 130

 Score =  264 bits (674), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI 60
           MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI
Sbjct: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI 60

Query: 61  RTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQE 120
           RTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQE
Sbjct: 61  RTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQE 120

Query: 121 HKEDYYASQI 130
           HKEDYYASQI
Sbjct: 121 HKEDYYASQI 130


>gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 123

 Score = 50.8 bits (120), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 17/135 (12%)

Query: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEK---LERALKTSKKLIHFRD 57
           MG LK ++ +EI  N+ F S  N     +P+ + E+++ E    L+  +     ++    
Sbjct: 1   MGALKNHFHDEINENFYFHSHPNA----DPDISIEMQISENQRYLDEEISQCNAVVDVFK 56

Query: 58  RTIRTHILE--DLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSE 115
           R+  T IL+  D ++++   I L +A  + L+  +    E W    E   D E  E   E
Sbjct: 57  RSDST-ILDKLDAMDDLKTYISLLQATAKNLKSLL---KEYW----EESLDGEDDEEIYE 108

Query: 116 HPDQEHKEDYYASQI 130
           HPDQEH+EDYYA+QI
Sbjct: 109 HPDQEHREDYYANQI 123


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 28.5 bits (62), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 33  NYEVEVIEKLERALKTSKKL--IHFR----DRTIRTHILEDLIEEVNRII 76
           NY    IE LERA+K +K L   HF+    D  I+T   +D +E + R+I
Sbjct: 160 NYGYADIEDLERAIKENKPLKPPHFQNNLSDNQIQTAYFQDKLESILRLI 209


>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 480

 Score = 23.5 bits (49), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 35  EVEVIEKLERALKTSKKLIHFRDRTIRT 62
           E+  + K+E++   S KLI F D+ ++T
Sbjct: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQT 474


>gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 175

 Score = 21.6 bits (44), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 56 RDRTIRTHILEDLIEEVNRIIVLAKAHKRRLEL 88
          RD   +  +LEDL +++ + ++L + HK+   L
Sbjct: 59 RDYLSQKKVLEDLQKDIEQRVILLENHKKEYNL 91


>gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 224

 Score = 21.2 bits (43), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 7/15 (46%), Positives = 14/15 (93%)

Query: 64  ILEDLIEEVNRIIVL 78
           ILED+I+E++ I+++
Sbjct: 125 ILEDVIDEIDMILIM 139


>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 452

 Score = 21.2 bits (43), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 45  ALKTSKKLIHFRDRTIRTHILEDLIEEVNRII 76
           ALK +  L  F+D     H   D  E++NR I
Sbjct: 361 ALKENNSL--FKDAQRAMHTFRDTSEKINRYI 390



 Score = 20.8 bits (42), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 15  NYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTS 49
           NY   +A N    I   S +  ++IE +E+ L T+
Sbjct: 145 NYFISNAENTSKKISDSSRHIQKIIENIEKPLTTT 179


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,505
Number of Sequences: 1233
Number of extensions: 3117
Number of successful extensions: 16
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 14
length of query: 130
length of database: 328,796
effective HSP length: 65
effective length of query: 65
effective length of database: 248,651
effective search space: 16162315
effective search space used: 16162315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)