Query gi|254781221|ref|YP_003065634.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:48:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781221.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o6l_A UDP-glucuronosyltransfe 23.6 41 0.0017 14.9 3.3 31 12-42 124-154 (170)
2 2l0z_A Glycoprotein G2; zinc-b 12.5 33 0.0014 15.4 -0.2 14 13-26 21-34 (42)
3 1jr5_A 10 kDa anti-sigma facto 12.4 31 0.0013 15.6 -0.3 39 18-56 40-78 (90)
4 3npd_A Putative secreted prote 11.9 82 0.0034 13.3 2.1 27 27-66 60-90 (118)
5 3ia7_A CALG4; glycosysltransfe 10.9 89 0.0037 13.1 3.3 30 11-40 335-364 (402)
6 1dd3_A 50S ribosomal protein L 10.6 91 0.0038 13.1 3.7 29 27-55 1-29 (128)
7 2w5v_A Alkaline phosphatase; p 9.0 57 0.0024 14.2 0.0 20 1-20 1-20 (375)
8 1jko_C HIN recombinase, DNA-in 8.4 1.1E+02 0.0047 12.6 1.3 17 23-39 2-18 (52)
9 3kup_A Chromobox protein homol 7.7 1.2E+02 0.0049 12.5 1.1 12 49-60 54-65 (65)
10 1zav_U 50S ribosomal protein L 7.2 1.3E+02 0.0054 12.3 3.7 29 27-55 1-29 (30)
No 1
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=23.58 E-value=41 Score=14.91 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=25.5
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998336323681118889999999865288
Q gi|254781221|r 12 LLSLCGCGLADEPKKLNPDQLCDAVCRLTLE 42 (68)
Q Consensus 12 llslcgcgladepkklnpdqlcdavcrltle 42 (68)
.+.--|+|..-..++++++++-+++-++.-+
T Consensus 124 ~v~~~G~g~~l~~~~~t~~~l~~ai~~ll~d 154 (170)
T 2o6l_A 124 HMKARGAAVRVDFNTMSSTDLLNALKRVIND 154 (170)
T ss_dssp HHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9998795898050578999999999999789
No 2
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=12.51 E-value=33 Score=15.41 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=11.0
Q ss_pred HHHHCCCCCCCCCC
Q ss_conf 99833632368111
Q gi|254781221|r 13 LSLCGCGLADEPKK 26 (68)
Q Consensus 13 lslcgcgladepkk 26 (68)
.++|.||+-..|++
T Consensus 21 ~g~CsCG~y~~~~k 34 (42)
T 2l0z_A 21 LGGCRCGKYPNLKK 34 (42)
T ss_dssp TSSBTTTTBCCCCC
T ss_pred CCEECCCCCCCCCC
T ss_conf 85072542268898
No 3
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=12.44 E-value=31 Score=15.56 Aligned_cols=39 Identities=33% Similarity=0.531 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 632368111888999999986528889999999988999
Q gi|254781221|r 18 CGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYE 56 (68)
Q Consensus 18 cgladepkklnpdqlcdavcrltleeqkelqtkvnqrye 56 (68)
-|+..+-+.+|--.+-.-.-|||-+|+++|-...|+-+|
T Consensus 40 lG~~~~G~e~t~~sfrqm~~~Lt~~er~elieeFn~G~e 78 (90)
T 1jr5_A 40 IGVTHEGRKLNQNSFRKIVSELTQEDKKTLIDEFNEGFE 78 (90)
T ss_dssp HTCCSSSSCCCSHHHHHHHHTCCHHHHHHHHTTSSSSST
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 378877648788769999986799889999999850108
No 4
>3npd_A Putative secreted protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CXS; 1.60A {Pseudomonas aeruginosa}
Probab=11.90 E-value=82 Score=13.31 Aligned_cols=27 Identities=52% Similarity=0.860 Sum_probs=20.5
Q ss_pred CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8889----999999865288899999999889999964021013
Q gi|254781221|r 27 LNPD----QLCDAVCRLTLEEQKELQTKVNQRYEEHLTKGAKLS 66 (68)
Q Consensus 27 lnpd----qlcdavcrltleeqkelqtkvnqryeehltkgakls 66 (68)
-||+ ||-+.||| |.-|.+-+.|||-+.
T Consensus 60 anP~~Vr~QLg~SVC~-------------N~gyR~LmakGAvmr 90 (118)
T 3npd_A 60 SNPDSVRSQLGDSVCS-------------NTGYRQLLARGAILT 90 (118)
T ss_dssp HCHHHHHHHHHHHHHT-------------CHHHHHHHTTTCEEE
T ss_pred HCHHHHHHHHHHHHHC-------------CCCHHHHHHCCCEEE
T ss_conf 1989999997477765-------------812899984776699
No 5
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=10.91 E-value=89 Score=13.13 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=25.5
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999983363236811188899999998652
Q gi|254781221|r 11 TLLSLCGCGLADEPKKLNPDQLCDAVCRLT 40 (68)
Q Consensus 11 tllslcgcgladepkklnpdqlcdavcrlt 40 (68)
..+.-.|+|+.-.+..++|++|.+++.++-
T Consensus 335 ~~l~~~G~g~~~~~~~~~~~~La~ai~~ll 364 (402)
T 3ia7_A 335 ERVIELGLGSVLRPDQLEPASIREAVERLA 364 (402)
T ss_dssp HHHHHTTSEEECCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHCCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf 999987988980603699999999999997
No 6
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=10.62 E-value=91 Score=13.07 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88899999998652888999999998899
Q gi|254781221|r 27 LNPDQLCDAVCRLTLEEQKELQTKVNQRY 55 (68)
Q Consensus 27 lnpdqlcdavcrltleeqkelqtkvnqry 55 (68)
++-|++-|..+.||+-|-.||-.....+|
T Consensus 1 ~t~~~ive~i~~LtllE~~eLv~~leek~ 29 (128)
T 1dd3_A 1 MTIDEIIEAIEKLTVSELAELVKKLEDKF 29 (128)
T ss_dssp CCHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 98899999997198999999999999997
No 7
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B
Probab=9.01 E-value=57 Score=14.16 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHHHCCCC
Q ss_conf 91789999999999833632
Q gi|254781221|r 1 MTIKKVLIASTLLSLCGCGL 20 (68)
Q Consensus 1 mtikkvliastllslcgcgl 20 (68)
|.+|+++.+-..|.++.|..
T Consensus 1 m~~~~~~~~l~~l~~~~~~~ 20 (375)
T 2w5v_A 1 MKLKKIVFTLIALGLFSCKT 20 (375)
T ss_dssp --------------------
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 96159999999999999864
No 8
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=8.44 E-value=1.1e+02 Score=12.61 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.9
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 81118889999999865
Q gi|254781221|r 23 EPKKLNPDQLCDAVCRL 39 (68)
Q Consensus 23 epkklnpdqlcdavcrl 39 (68)
-|++|+|+|+-.|.-.+
T Consensus 2 Rp~kLt~~q~~~a~~l~ 18 (52)
T 1jko_C 2 RPRAINKHEQEQISRLL 18 (52)
T ss_dssp CCCSSCTTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 79879999999999999
No 9
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} PDB: 1dz1_A
Probab=7.71 E-value=1.2e+02 Score=12.49 Aligned_cols=12 Identities=50% Similarity=0.479 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999889999964
Q gi|254781221|r 49 TKVNQRYEEHLT 60 (68)
Q Consensus 49 tkvnqryeehlt 60 (68)
..|-+-||+|||
T Consensus 54 q~VI~fYE~rlt 65 (65)
T 3kup_A 54 QIVIAFYEERLT 65 (65)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997539
No 10
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=7.17 E-value=1.3e+02 Score=12.27 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88899999998652888999999998899
Q gi|254781221|r 27 LNPDQLCDAVCRLTLEEQKELQTKVNQRY 55 (68)
Q Consensus 27 lnpdqlcdavcrltleeqkelqtkvnqry 55 (68)
.|-+|...|.-.||..|-.||-.+....+
T Consensus 1 m~~eeiv~aiekltvaelaelvk~ledkf 29 (30)
T 1zav_U 1 MTIDEIIEAIEKLTVSELAELVKKLEDKF 29 (30)
T ss_dssp CCHHHHHHHHHHSBHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97999999999961999999999987664
Done!