BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781221|ref|YP_003065634.1| hypothetical protein
CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781221|ref|YP_003065634.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040898|gb|ACT57694.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|317120685|gb|ADV02508.1| hypothetical protein SC1_gp140 [Liberibacter phage SC1]
 gi|317120727|gb|ADV02549.1| hypothetical protein SC2_gp140 [Liberibacter phage SC2]
 gi|317120788|gb|ADV02609.1| hypothetical protein SC2_gp140 [Liberibacter phage SC2]
 gi|317120829|gb|ADV02650.1| hypothetical protein SC1_gp140 [Liberibacter phage SC1]
          Length = 68

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60
          MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT
Sbjct: 1  MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60

Query: 61 KGAKLSSD 68
          KGAKLSSD
Sbjct: 61 KGAKLSSD 68


>gi|315122558|ref|YP_004063047.1| hypothetical protein CKC_04050 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495960|gb|ADR52559.1| hypothetical protein CKC_04050 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 71

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 58/71 (81%), Gaps = 3/71 (4%)

Query: 1  MTIKKVLIASTLLS---LCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
          M  K  LIASTL++   L GC LADEPKKLNPDQ+CDA+C LT ++Q+ELQ+KV+++YEE
Sbjct: 1  MKTKTFLIASTLITSGLLAGCDLADEPKKLNPDQICDAICNLTTKQQEELQSKVDKKYEE 60

Query: 58 HLTKGAKLSSD 68
          HL  GAK+SSD
Sbjct: 61 HLKTGAKISSD 71


>gi|315122912|ref|YP_004063401.1| hypothetical protein CKC_05840 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496314|gb|ADR52913.1| hypothetical protein CKC_05840 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 71

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 3/71 (4%)

Query: 1  MTIKKVLIASTLLS---LCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
          M  K  LIAS + +   L GC LADEPKKLNPDQ+CDA+C+L L+EQ+ELQ+KV+Q+YE+
Sbjct: 1  MKTKTFLIASIIATSGLLAGCNLADEPKKLNPDQICDAICKLNLQEQQELQSKVDQKYED 60

Query: 58 HLTKGAKLSSD 68
          HL  G K+SSD
Sbjct: 61 HLKTGTKISSD 71


>gi|315122557|ref|YP_004063046.1| hypothetical protein CKC_04045 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495959|gb|ADR52558.1| hypothetical protein CKC_04045 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 74

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 1  MTIKKVLIASTLLS---LCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
          M  K  LIASTL++   L GC LADE  KL PDQ+CD + +LT +EQ EL  K+ ++YEE
Sbjct: 4  MKTKTFLIASTLITSGLLAGCDLADESNKLTPDQICDGIVKLTKKEQDELHIKLKKKYEE 63

Query: 58 HLTKGAKLSSD 68
          HL  GAK+  +
Sbjct: 64 HLKTGAKIYGN 74


>gi|309388934|gb|ADO76814.1| hypothetical protein Hprae_0660 [Halanaerobium praevalens DSM
          2228]
          Length = 364

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 3  IKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYE 56
          I  VL++ TL+ L GCG  ++ +K  P++       L+ +E+KE    + ++YE
Sbjct: 7  ILMVLLSITLVFLTGCGFKEKSQKPKPEEQIQTQTDLSSQERKEEIASLEEKYE 60


>gi|307180264|gb|EFN68297.1| ADP-ribosylation factor GTPase-activating protein 3 [Camponotus
           floridanus]
          Length = 524

 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/26 (57%), Positives = 22/26 (84%)

Query: 39  LTLEEQKELQTKVNQRYEEHLTKGAK 64
           +T EEQ+EL T++ QRYE++LT+ AK
Sbjct: 271 VTKEEQEELATRLAQRYEQNLTQQAK 296


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254781221|ref|YP_003065634.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040898|gb|ACT57694.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|317120685|gb|ADV02508.1| hypothetical protein SC1_gp140 [Liberibacter phage SC1]
 gi|317120727|gb|ADV02549.1| hypothetical protein SC2_gp140 [Liberibacter phage SC2]
 gi|317120788|gb|ADV02609.1| hypothetical protein SC2_gp140 [Liberibacter phage SC2]
 gi|317120829|gb|ADV02650.1| hypothetical protein SC1_gp140 [Liberibacter phage SC1]
          Length = 68

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60
          MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT
Sbjct: 1  MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60

Query: 61 KGAKLSSD 68
          KGAKLSSD
Sbjct: 61 KGAKLSSD 68


>gi|315122912|ref|YP_004063401.1| hypothetical protein CKC_05840 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496314|gb|ADR52913.1| hypothetical protein CKC_05840 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 71

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 3/71 (4%)

Query: 1  MTIKKVLIASTLLS---LCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
          M  K  LIAS + +   L GC LADEPKKLNPDQ+CDA+C+L L+EQ+ELQ+KV+Q+YE+
Sbjct: 1  MKTKTFLIASIIATSGLLAGCNLADEPKKLNPDQICDAICKLNLQEQQELQSKVDQKYED 60

Query: 58 HLTKGAKLSSD 68
          HL  G K+SSD
Sbjct: 61 HLKTGTKISSD 71


>gi|315122558|ref|YP_004063047.1| hypothetical protein CKC_04050 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495960|gb|ADR52559.1| hypothetical protein CKC_04050 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 71

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 58/71 (81%), Gaps = 3/71 (4%)

Query: 1  MTIKKVLIASTLLS---LCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
          M  K  LIASTL++   L GC LADEPKKLNPDQ+CDA+C LT ++Q+ELQ+KV+++YEE
Sbjct: 1  MKTKTFLIASTLITSGLLAGCDLADEPKKLNPDQICDAICNLTTKQQEELQSKVDKKYEE 60

Query: 58 HLTKGAKLSSD 68
          HL  GAK+SSD
Sbjct: 61 HLKTGAKISSD 71


>gi|315122557|ref|YP_004063046.1| hypothetical protein CKC_04045 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495959|gb|ADR52558.1| hypothetical protein CKC_04045 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 74

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 1  MTIKKVLIASTLLS---LCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
          M  K  LIASTL++   L GC LADE  KL PDQ+CD + +LT +EQ EL  K+ ++YEE
Sbjct: 4  MKTKTFLIASTLITSGLLAGCDLADESNKLTPDQICDGIVKLTKKEQDELHIKLKKKYEE 63

Query: 58 HLTKGAKLSSD 68
          HL  GAK+  +
Sbjct: 64 HLKTGAKIYGN 74


>gi|315121945|ref|YP_004062434.1| hypothetical protein CKC_00975 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495347|gb|ADR51946.1| hypothetical protein CKC_00975 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 79

 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 1  MTIKKVLIASTLLS---LCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQ 53
          M  K  LIAS + +   L GC LADEPK    + + D +  +      E++  V++
Sbjct: 1  MKTKTFLIASIIATSGLLAGCNLADEPK----NNIVDGLVTIPNNTTTEVKQAVSE 52


>gi|309388934|gb|ADO76814.1| hypothetical protein Hprae_0660 [Halanaerobium praevalens DSM
          2228]
          Length = 364

 Score = 37.7 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 1  MTIKKV----LIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYE 56
          M  K      L++ TL+ L GCG  ++ +K  P++       L+ +E+KE    + ++YE
Sbjct: 1  MKSKLFILMVLLSITLVFLTGCGFKEKSQKPKPEEQIQTQTDLSSQERKEEIASLEEKYE 60

Query: 57 EHLTKGAKLSSD 68
             +   ++  +
Sbjct: 61 IESSTENQIFEN 72


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.138    0.372 

Lambda     K      H
   0.267   0.0419    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,070,424,354
Number of Sequences: 14124377
Number of extensions: 29689441
Number of successful extensions: 78374
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 78359
Number of HSP's gapped (non-prelim): 14
length of query: 68
length of database: 4,842,793,630
effective HSP length: 40
effective length of query: 28
effective length of database: 4,277,818,550
effective search space: 119778919400
effective search space used: 119778919400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)