BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781221|ref|YP_003065634.1| hypothetical protein
CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781221|ref|YP_003065634.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040898|gb|ACT57694.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|317120685|gb|ADV02508.1| hypothetical protein SC1_gp140 [Liberibacter phage SC1]
 gi|317120727|gb|ADV02549.1| hypothetical protein SC2_gp140 [Liberibacter phage SC2]
 gi|317120788|gb|ADV02609.1| hypothetical protein SC2_gp140 [Liberibacter phage SC2]
 gi|317120829|gb|ADV02650.1| hypothetical protein SC1_gp140 [Liberibacter phage SC1]
          Length = 68

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60
          MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT
Sbjct: 1  MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60

Query: 61 KGAKLSSD 68
          KGAKLSSD
Sbjct: 61 KGAKLSSD 68


>gi|315122558|ref|YP_004063047.1| hypothetical protein CKC_04050 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495960|gb|ADR52559.1| hypothetical protein CKC_04050 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 71

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 58/71 (81%), Gaps = 3/71 (4%)

Query: 1  MTIKKVLIASTLLS---LCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
          M  K  LIASTL++   L GC LADEPKKLNPDQ+CDA+C LT ++Q+ELQ+KV+++YEE
Sbjct: 1  MKTKTFLIASTLITSGLLAGCDLADEPKKLNPDQICDAICNLTTKQQEELQSKVDKKYEE 60

Query: 58 HLTKGAKLSSD 68
          HL  GAK+SSD
Sbjct: 61 HLKTGAKISSD 71


>gi|315122912|ref|YP_004063401.1| hypothetical protein CKC_05840 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496314|gb|ADR52913.1| hypothetical protein CKC_05840 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 71

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 3/71 (4%)

Query: 1  MTIKKVLIASTLLS---LCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
          M  K  LIAS + +   L GC LADEPKKLNPDQ+CDA+C+L L+EQ+ELQ+KV+Q+YE+
Sbjct: 1  MKTKTFLIASIIATSGLLAGCNLADEPKKLNPDQICDAICKLNLQEQQELQSKVDQKYED 60

Query: 58 HLTKGAKLSSD 68
          HL  G K+SSD
Sbjct: 61 HLKTGTKISSD 71


>gi|315122557|ref|YP_004063046.1| hypothetical protein CKC_04045 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495959|gb|ADR52558.1| hypothetical protein CKC_04045 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 74

 Score = 74.0 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 3/68 (4%)

Query: 1  MTIKKVLIASTLLS---LCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
          M  K  LIASTL++   L GC LADE  KL PDQ+CD + +LT +EQ EL  K+ ++YEE
Sbjct: 4  MKTKTFLIASTLITSGLLAGCDLADESNKLTPDQICDGIVKLTKKEQDELHIKLKKKYEE 63

Query: 58 HLTKGAKL 65
          HL  GAK+
Sbjct: 64 HLKTGAKI 71


>gi|309388934|gb|ADO76814.1| hypothetical protein Hprae_0660 [Halanaerobium praevalens DSM
          2228]
          Length = 364

 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 3  IKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYE 56
          I  VL++ TL+ L GCG  ++ +K  P++       L+ +E+KE    + ++YE
Sbjct: 7  ILMVLLSITLVFLTGCGFKEKSQKPKPEEQIQTQTDLSSQERKEEIASLEEKYE 60


>gi|307180264|gb|EFN68297.1| ADP-ribosylation factor GTPase-activating protein 3 [Camponotus
           floridanus]
          Length = 524

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/26 (57%), Positives = 22/26 (84%)

Query: 39  LTLEEQKELQTKVNQRYEEHLTKGAK 64
           +T EEQ+EL T++ QRYE++LT+ AK
Sbjct: 271 VTKEEQEELATRLAQRYEQNLTQQAK 296


>gi|288555845|ref|YP_003427780.1| hypothetical protein BpOF4_14185 [Bacillus pseudofirmus OF4]
 gi|288547005|gb|ADC50888.1| hypothetical protein BpOF4_14185 [Bacillus pseudofirmus OF4]
          Length = 247

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 9  ASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLTKGAKLSSD 68
          A T LS CG   +DE +    DQL      L L +Q E+  +V   +E H+T+G  L  D
Sbjct: 11 ALTALSACGGAESDEMEMGMDDQLTPIEVELVLPDQAEINEEV--LFESHVTQGDDLVED 68


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.131    0.371 

Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,483,947
Number of Sequences: 14124377
Number of extensions: 13744512
Number of successful extensions: 29486
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29480
Number of HSP's gapped (non-prelim): 7
length of query: 68
length of database: 4,842,793,630
effective HSP length: 40
effective length of query: 28
effective length of database: 4,277,818,550
effective search space: 119778919400
effective search space used: 119778919400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)