RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781221|ref|YP_003065634.1| hypothetical protein
CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4
          [TaxId: 10665]}
          Length = 89

 Score = 22.9 bits (49), Expect = 7.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 19 GLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
          G+  E +KLN +     V  LT E++K L  + N+ +E 
Sbjct: 40 GVTHEGRKLNQNSFRKIVSELTQEDKKTLIDEFNEGFEG 78


>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain)
          {Synthetic}
          Length = 47

 Score = 23.1 bits (50), Expect = 7.2
 Identities = 3/22 (13%), Positives = 7/22 (31%)

Query: 24 PKKLNPDQLCDAVCRLTLEEQK 45
          P+ +N  +       L     +
Sbjct: 3  PRAINKHEQEQISRLLEKGHPR 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 222,933
Number of extensions: 7596
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 2
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)