RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781221|ref|YP_003065634.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62] (68 letters) >d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]} Length = 89 Score = 22.9 bits (49), Expect = 7.2 Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 19 GLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57 G+ E +KLN + V LT E++K L + N+ +E Sbjct: 40 GVTHEGRKLNQNSFRKIVSELTQEDKKTLIDEFNEGFEG 78 >d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Length = 47 Score = 23.1 bits (50), Expect = 7.2 Identities = 3/22 (13%), Positives = 7/22 (31%) Query: 24 PKKLNPDQLCDAVCRLTLEEQK 45 P+ +N + L + Sbjct: 3 PRAINKHEQEQISRLLEKGHPR 24 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.315 0.131 0.371 Gapped Lambda K H 0.267 0.0622 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 222,933 Number of extensions: 7596 Number of successful extensions: 11 Number of sequences better than 10.0: 1 Number of HSP's gapped: 11 Number of HSP's successfully gapped: 2 Length of query: 68 Length of database: 2,407,596 Length adjustment: 37 Effective length of query: 31 Effective length of database: 1,899,586 Effective search space: 58887166 Effective search space used: 58887166 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 47 (22.1 bits)