Query gi|254781222|ref|YP_003065635.1| hypothetical protein CLIBASIA_05645 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 70
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:49:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781222.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pig_A Putative transferase; S 97.1 1.5E-05 6.3E-10 48.6 -2.9 37 32-69 2-48 (334)
2 2j91_A Adenylosuccinate lyase; 22.9 35 0.0015 15.8 2.0 35 19-56 30-64 (503)
3 3ggz_E Vacuolar protein-sortin 9.9 75 0.0032 14.1 0.9 10 46-55 20-29 (29)
4 2jee_A YIIU; FTSZ, septum, coi 6.9 1.5E+02 0.0061 12.6 2.4 26 29-56 52-77 (81)
5 3fbz_A ORF140, putative unchar 6.7 80 0.0034 14.0 -0.1 10 15-24 7-16 (140)
6 2hin_A GP39, repressor protein 5.7 1.3E+02 0.0054 12.9 0.5 13 53-65 7-19 (71)
7 3ci9_A Heat shock factor-bindi 5.5 1.2E+02 0.0049 13.1 0.2 28 6-33 12-39 (48)
8 1wn4_A Vontr protein; helix, p 5.2 1.2E+02 0.0049 13.1 0.0 14 52-67 14-27 (28)
9 1sfe_A ADA O6-methylguanine-DN 4.9 79 0.0033 14.0 -1.0 12 37-48 95-106 (180)
10 1whr_A Hypothetical KIAA1002 p 4.1 2.3E+02 0.0095 11.6 2.2 26 8-34 36-61 (124)
No 1
>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A
Probab=97.13 E-value=1.5e-05 Score=48.64 Aligned_cols=37 Identities=35% Similarity=0.686 Sum_probs=28.6
Q ss_pred HHHHHCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 44210489999999----------988888763321433211001101
Q gi|254781222|r 32 KKYKITKEEHRVFS----------ECHRIRALRGFNDVKKGALGGFYR 69 (70)
Q Consensus 32 kkykitkeehrvfs----------echriralrgfndvkkgalggfyr 69 (70)
|||.+|.|. |.|+ .-+||||||-|.|||+|.||||-.
T Consensus 2 ~ky~~~~~~-~~~~~~~~~~~~~~~l~~i~a~~~~~~v~~g~~gg~~~ 48 (334)
T 2pig_A 2 TKYRLSEGP-RAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVD 48 (334)
T ss_dssp -CEEECSSC-EEEEEEETTEEEEEEEEEEEESSCBTTBCTTCEEEEES
T ss_pred CCEEECCCC-CEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCEEE
T ss_conf 716823542-02255406762761599999972206422677765558
No 2
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purine biosynthesis, alternative splicing; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=22.93 E-value=35 Score=15.85 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 02320134452014421048999999998888876332
Q gi|254781222|r 19 SSTDRYGRIEPMTKKYKITKEEHRVFSECHRIRALRGF 56 (70)
Q Consensus 19 sstdrygriepmtkkykitkeehrvfsechriralrgf 56 (70)
-+.|.| +-||...|. ++|-..+|||-.++++..-+
T Consensus 30 ~~~~~~--~sPl~~RY~-~~em~~ifSe~~~~~~~l~v 64 (503)
T 2j91_A 30 GSPDSY--RSPLASRYA-SPEMCFVFSDRYKFRTWRQL 64 (503)
T ss_dssp CCTTSC--CCHHHHTTS-CHHHHHHTSHHHHHHHHHHH
T ss_pred CCCCCC--CCCCCCCCC-CHHHHHHCCHHHHHHHHHHH
T ss_conf 666554--698644448-89999880948999999999
No 3
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=9.93 E-value=75 Score=14.11 Aligned_cols=10 Identities=60% Similarity=0.959 Sum_probs=7.4
Q ss_pred HHHHHHHHHH
Q ss_conf 9888887633
Q gi|254781222|r 46 ECHRIRALRG 55 (70)
Q Consensus 46 echriralrg 55 (70)
-..|+|||||
T Consensus 20 laqrlralrg 29 (29)
T 3ggz_E 20 LAQRLRALRG 29 (29)
T ss_pred HHHHHHHHCC
T ss_conf 9999998629
No 4
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=6.95 E-value=1.5e+02 Score=12.64 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=18.7
Q ss_pred CCHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2014421048999999998888876332
Q gi|254781222|r 29 PMTKKYKITKEEHRVFSECHRIRALRGF 56 (70)
Q Consensus 29 pmtkkykitkeehrvfsechriralrgf 56 (70)
.......--|.||.++.+ |+|+|-|-
T Consensus 52 ~L~~eN~qLk~E~~~Wqe--Rlr~LLGK 77 (81)
T 2jee_A 52 ELERENNHLKEQQNGWQE--RLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHCC
T ss_conf 999999998999999999--99998710
No 5
>3fbz_A ORF140, putative uncharacterized protein; archaeal virus, extremophiles, lipothrixviridae, structural protein; HET: BOG; 2.30A {Acidianus filamentous virus 1}
Probab=6.69 E-value=80 Score=13.97 Aligned_cols=10 Identities=60% Similarity=0.883 Sum_probs=7.9
Q ss_pred HHHCCCCCCC
Q ss_conf 9720023201
Q gi|254781222|r 15 LFQQSSTDRY 24 (70)
Q Consensus 15 lfqqsstdry 24 (70)
-+.|.|+|||
T Consensus 7 K~RQDS~DRY 16 (140)
T 3fbz_A 7 KLRQDSTDRY 16 (140)
T ss_dssp --------CH
T ss_pred HHHCCCHHHH
T ss_conf 6750314678
No 6
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15}
Probab=5.68 E-value=1.3e+02 Score=12.91 Aligned_cols=13 Identities=54% Similarity=0.930 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6332143321100
Q gi|254781222|r 53 LRGFNDVKKGALG 65 (70)
Q Consensus 53 lrgfndvkkgalg 65 (70)
.|-|.||.|.|.|
T Consensus 7 irhfgdvekaa~g 19 (71)
T 2hin_A 7 VRHFGDVEKAAVG 19 (71)
T ss_dssp HHHHSSHHHHHHH
T ss_pred HHHHHHHHHHHCC
T ss_conf 9984008887401
No 7
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=5.52 E-value=1.2e+02 Score=13.15 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 4599999999720023201344520144
Q gi|254781222|r 6 EPLEQTIKGLFQQSSTDRYGRIEPMTKK 33 (70)
Q Consensus 6 epleqtikglfqqsstdrygriepmtkk 33 (70)
+-|-|.+..-||.-|..-.|||+-|..+
T Consensus 12 q~LL~QmQ~kFq~mSd~Ii~riDdM~~r 39 (48)
T 3ci9_A 12 QTLLQQMQDKFQTISDQIIGRIDDMSSR 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998899999999998836
No 8
>1wn4_A Vontr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=5.22 E-value=1.2e+02 Score=13.12 Aligned_cols=14 Identities=64% Similarity=1.044 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 7633214332110011
Q gi|254781222|r 52 ALRGFNDVKKGALGGF 67 (70)
Q Consensus 52 alrgfndvkkgalggf 67 (70)
||-.| .|||.|||.
T Consensus 14 alvaf--akkgnlggl 27 (28)
T 1wn4_A 14 ALVAF--AKKGNLGGL 27 (28)
T ss_dssp HHHHH--HHHHSSSCC
T ss_pred HHHHH--HHCCCCCCC
T ss_conf 99999--861777799
No 9
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding protein, DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli B} SCOP: a.4.2.1 c.55.7.1
Probab=4.86 E-value=79 Score=14.00 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=4.9
Q ss_pred CHHHHHHHHHHH
Q ss_conf 489999999988
Q gi|254781222|r 37 TKEEHRVFSECH 48 (70)
Q Consensus 37 tkeehrvfsech 48 (70)
|.=..+|+.+.-
T Consensus 95 T~Fq~~Vw~aL~ 106 (180)
T 1sfe_A 95 TAFQQQVWQALR 106 (180)
T ss_dssp CHHHHHHHHHHT
T ss_pred CCHHHHHHHHHH
T ss_conf 639999999986
No 10
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=4.08 E-value=2.3e+02 Score=11.64 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 999999997200232013445201442
Q gi|254781222|r 8 LEQTIKGLFQQSSTDRYGRIEPMTKKY 34 (70)
Q Consensus 8 leqtikglfqqsstdrygriepmtkky 34 (70)
+|++|..+.+.+....+- ..||++.+
T Consensus 36 ~E~~l~~Fi~d~~~~~~~-fppM~s~~ 61 (124)
T 1whr_A 36 LEQEILEFINDNNNQFKK-FPQMTSYH 61 (124)
T ss_dssp HHHHHHHHHHCSSCCEEE-CCCCCHHH
T ss_pred HHHHHHHHHHCCHHHCEE-CCCCCHHH
T ss_conf 999999998287300226-79988799
Done!