RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781222|ref|YP_003065635.1| hypothetical protein
CLIBASIA_05645 [Candidatus Liberibacter asiaticus str. psy62]
         (70 letters)



>gnl|CDD|30099 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
           II mediates cortical contraction in cell motility, and
           is the motor in smooth and skeletal muscle. This
           catalytic (head) domain has ATPase activity and belongs
           to the larger group of P-loop NTPases. Myosins are
           actin-dependent molecular motors that play important
           roles in muscle contraction, cell motility, and
           organelle transport. The head domain is a molecular
           motor, which utilizes ATP hydrolysis to generate
           directed movement toward the plus end along actin
           filaments. A cyclical interaction between myosin and
           actin provides the driving force. Rates of ATP
           hydrolysis and consequently the speed of movement along
           actin filaments vary widely, from about 0.04 micrometer
           per second for myosin I to 4.5 micrometer per second for
           myosin II in skeletal muscle. Myosin II moves in
           discrete steps about 5-10 nm long and generates 1-5
           piconewtons of force. Upon ATP binding, the myosin head
           dissociates from an actin filament. ATP hydrolysis
           causes the head to pivot and associate with a new actin
           subunit. The release of Pi causes the head to pivot and
           move the filament (power stroke). Release of ADP
           completes the cycle..
          Length = 693

 Score = 24.8 bits (54), Expect = 5.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 3   KAKEPLEQTIKGLFQQSS 20
           K K+PL   + GL ++SS
Sbjct: 513 KNKDPLNDNVVGLLKKSS 530


>gnl|CDD|36730 KOG1517, KOG1517, KOG1517, Guanine nucleotide binding protein MIP1
           [Cell cycle control, cell division, chromosome
           partitioning].
          Length = 1387

 Score = 24.6 bits (53), Expect = 5.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 45  SECHRIRALR 54
           S+ HR+RAL 
Sbjct: 483 SQVHRLRALV 492


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0789    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 816,815
Number of extensions: 31842
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 4
Length of query: 70
Length of database: 6,263,737
Length adjustment: 41
Effective length of query: 29
Effective length of database: 5,377,768
Effective search space: 155955272
Effective search space used: 155955272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)