RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781222|ref|YP_003065635.1| hypothetical protein CLIBASIA_05645 [Candidatus Liberibacter asiaticus str. psy62] (70 letters) >gnl|CDD|30099 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle.. Length = 693 Score = 24.8 bits (54), Expect = 5.8 Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 3 KAKEPLEQTIKGLFQQSS 20 K K+PL + GL ++SS Sbjct: 513 KNKDPLNDNVVGLLKKSS 530 >gnl|CDD|36730 KOG1517, KOG1517, KOG1517, Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]. Length = 1387 Score = 24.6 bits (53), Expect = 5.8 Identities = 6/10 (60%), Positives = 8/10 (80%) Query: 45 SECHRIRALR 54 S+ HR+RAL Sbjct: 483 SQVHRLRALV 492 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.138 0.401 Gapped Lambda K H 0.267 0.0789 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 816,815 Number of extensions: 31842 Number of successful extensions: 74 Number of sequences better than 10.0: 1 Number of HSP's gapped: 74 Number of HSP's successfully gapped: 4 Length of query: 70 Length of database: 6,263,737 Length adjustment: 41 Effective length of query: 29 Effective length of database: 5,377,768 Effective search space: 155955272 Effective search space used: 155955272 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.3 bits)