RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781222|ref|YP_003065635.1| hypothetical protein
CLIBASIA_05645 [Candidatus Liberibacter asiaticus str. psy62]
         (70 letters)



>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics,
          PSI-2, protein structure initiative, northeast
          structural genomics consortium; 2.38A {Salmonella
          paratyphi} PDB: 2f9c_A
          Length = 334

 Score = 50.6 bits (120), Expect = 9e-08
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 11/46 (23%)

Query: 32 KKYKITKEEHRVFSEC----------HRIRALRGFNDVKKGALGGF 67
           KY+++ E  R F+             ++ A+  FNDVK G  GG+
Sbjct: 2  TKYRLS-EGPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGW 46


>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase,
          succino AMP-lyase, purine biosynthesis, alternative
          splicing; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
          Length = 503

 Score = 28.0 bits (61), Expect = 0.49
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 10 QTIKGLFQQSSTDRYGRIEPMTKKYKITKEEHRVFSECHRIRALR 54
          Q++       S D Y    P+  +Y  + E   VFS+ ++ R  R
Sbjct: 21 QSMAAGGDHGSPDSY--RSPLASRYA-SPEMCFVFSDRYKFRTWR 62


>3jyg_A Uncharacterized protein; structural genomics, unknown function,
          PSI-2, protein structure initiative; 1.95A {Wolinella
          succinogenes}
          Length = 188

 Score = 26.8 bits (58), Expect = 1.1
 Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)

Query: 30 MTKKYKITKEEHRVFSECHRIR 51
          M+  Y+I KE    F   HR+ 
Sbjct: 1  MSLIYQIAKEFD--FCYGHRVW 20


>3bz1_O MSP, photosystem II manganese-stabilizing polypeptide; electron
           transport photosystem, membrane complex, transmembrane
           alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG
           LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_O*
           3bz2_O* 1s5l_O* 3a0b_O* 3a0h_O*
          Length = 247

 Score = 25.5 bits (56), Expect = 3.3
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 7/26 (26%)

Query: 4   AKEPLEQTIKGLFQQSSTDRYGRIEP 29
           A EP E  I+G+F       Y  IEP
Sbjct: 228 AHEPHEVKIQGVF-------YASIEP 246


>1yis_A Adenylosuccinate lyase; structural genomics, PSI, protein
          structure initiative, southeast collaboratory for
          structural genomics, secsg; 2.40A {Caenorhabditis
          elegans}
          Length = 478

 Score = 23.7 bits (50), Expect = 9.2
 Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 19 SSTDRYGRIEPMTKKYKITKEEHRVFSECHRIRALR 54
          +S D++     ++ +Y        + SE ++    R
Sbjct: 2  ASEDKF--ESVLSTRYCKNSPLVSILSETNKATLWR 35


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 603,241
Number of extensions: 21857
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 6
Length of query: 70
Length of database: 5,693,230
Length adjustment: 40
Effective length of query: 30
Effective length of database: 4,723,470
Effective search space: 141704100
Effective search space used: 141704100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)