HHsearch alignment for GI: 254781223 and conserved domain: TIGR01208

>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=97.96  E-value=8.4e-06  Score=40.70  Aligned_cols=91  Identities=12%  Similarity=0.227  Sum_probs=52.6

Q ss_pred             CCCEEECCCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89709928839979815457543231122222221001135520221111222110112222211011111111243220
Q gi|254781223|r    8 RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISG   87 (110)
Q Consensus         8 ~~~a~I~~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~i~~~~~I~~   87 (110)
T Consensus       252 ~~~s~i~GRV~v~~gakid~ns~i~GPa~IG~d~~I~nsGyiGPYtSig~~~~I~d-~~vE~-S~vldes~I~~v~~Ri~  329 (361)
T TIGR01208       252 DDESKIEGRVEVGEGAKIDVNSVIRGPAVIGEDCIIENSGYIGPYTSIGEGVVIRD-AEVEH-SIVLDESVIEGVEKRIV  329 (361)
T ss_pred             ECCCEEEEEEEECCCCEECCCCEEECCEEECCCCEEECCCCCCCEEEECCCEEEEC-CCCCC-EEEECCCEEEEHHHHHH
T ss_conf             22657884079089788423777870608779527826861177077257538741-63020-35644211431032022


Q ss_pred             CEEECCCEEECCC
Q ss_conf             1397498499888
Q gi|254781223|r   88 NARVRGNAVVGGD  100 (110)
Q Consensus        88 ~~~I~~~~~I~~~  100 (110)
T Consensus       330 dS~iG~~~~i~~~  342 (361)
T TIGR01208       330 DSVIGKKVRIKGN  342 (361)
T ss_pred             HEECCCCCEEECC
T ss_conf             3011782078437