HHsearch alignment for GI: 254781223 and conserved domain: TIGR01208
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=97.96 E-value=8.4e-06 Score=40.70 Aligned_cols=91 Identities=12% Similarity=0.227 Sum_probs=52.6
Q ss_pred CCCEEECCCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89709928839979815457543231122222221001135520221111222110112222211011111111243220
Q gi|254781223|r 8 RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISG 87 (110)
Q Consensus 8 ~~~a~I~~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~i~~~~~I~~ 87 (110)
T Consensus 252 ~~~s~i~GRV~v~~gakid~ns~i~GPa~IG~d~~I~nsGyiGPYtSig~~~~I~d-~~vE~-S~vldes~I~~v~~Ri~ 329 (361)
T TIGR01208 252 DDESKIEGRVEVGEGAKIDVNSVIRGPAVIGEDCIIENSGYIGPYTSIGEGVVIRD-AEVEH-SIVLDESVIEGVEKRIV 329 (361)
T ss_pred ECCCEEEEEEEECCCCEECCCCEEECCEEECCCCEEECCCCCCCEEEECCCEEEEC-CCCCC-EEEECCCEEEEHHHHHH
T ss_conf 22657884079089788423777870608779527826861177077257538741-63020-35644211431032022
Q ss_pred CEEECCCEEECCC
Q ss_conf 1397498499888
Q gi|254781223|r 88 NARVRGNAVVGGD 100 (110)
Q Consensus 88 ~~~I~~~~~I~~~ 100 (110)
T Consensus 330 dS~iG~~~~i~~~ 342 (361)
T TIGR01208 330 DSVIGKKVRIKGN 342 (361)
T ss_pred HEECCCCCEEECC
T ss_conf 3011782078437