HHsearch alignment for GI: 254781223 and conserved domain: cd00710
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.43 E-value=2.2e-13 Score=72.30 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=30.9
Q ss_pred EECCCCEECCCCCCCC----CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 9979815457543231----122222221001135520221111222110112222211011111111243220139749
Q gi|254781223|r 18 RVSGNASVSRFAQVKS----NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93 (110)
Q Consensus 18 ~I~~n~~I~~~~~i~~----~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~ 93 (110)
T Consensus 44 ~IG~~~nIqD~~viH~~~~~~~~IG~~vtIgh~a~ihG~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V-~g~~i~~ 121 (167)
T cd00710 44 IIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVV-DGVEIPP 121 (167)
T ss_pred EECCCCCCCCCEEEECCCCCCEEECCCCEECCCCEECCEEEECCCCEECCCCEEEC-CEECCCCEECCCCEE-ECCCCCC
T ss_conf 98887434777078225766749779828989848812049839988988989982-597699899889888-4778399
Q ss_pred CEEECCCCEE
Q ss_conf 8499888899
Q gi|254781223|r 94 NAVVGGDTVV 103 (110)
Q Consensus 94 ~~~I~~~~~I 103 (110)
T Consensus 122 g~~v~~G~~v 131 (167)
T cd00710 122 GRYVPAGAVI 131 (167)
T ss_pred CCEECCCCEE
T ss_conf 9895588288