HHsearch alignment for GI: 254781223 and conserved domain: cd03350
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.63 E-value=3.7e-16 Score=83.89 Aligned_cols=104 Identities=22% Similarity=0.234 Sum_probs=94.0
Q ss_pred CCCCEEECCCEEECCCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC--------CCCCCCCC
Q ss_conf 9687698897099288399798154575432311222222210011355202211112221101--------12222211
Q gi|254781223|r 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGN--------AIVRDTAE 72 (110)
Q Consensus 1 i~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~--------~~~~~~~~ 72 (110)
T Consensus 4 I~P~A~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~g~~i~g~~~p~~~~~v~IeD~~~ 83 (139)
T cd03350 4 VPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVF 83 (139)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCCCCCCEECCCEE
T ss_conf 49982988999999998998899984398989872786666026866999932898886784442576468868879959
Q ss_pred CCCCCCCCCCCCCCCCEEECCCEEECCCCEEC
Q ss_conf 01111111124322013974984998888996
Q gi|254781223|r 73 VGGDAFVIGFTVISGNARVRGNAVVGGDTVVE 104 (110)
Q Consensus 73 i~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I~ 104 (110)
T Consensus 84 IGa~a~V~~Gv~IG~~avIGAGsVVtkdvp~y 115 (139)
T cd03350 84 IGANCEVVEGVIVGKGAVLAAGVVLTQSTPIY 115 (139)
T ss_pred EEECCEEECCCEECCCCEECCCCEEECCCCCE
T ss_conf 93099894687999998999798891898846