HHsearch alignment for GI: 254781223 and conserved domain: cd03359
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.70 E-value=3.5e-17 Score=88.17 Aligned_cols=104 Identities=14% Similarity=0.222 Sum_probs=82.3
Q ss_pred EEECCCEEECC--CCEECCCCEECCCCCCCCC---CCCCCCCCEEEEEEEEC------------CCCCCCCCCCCCCCCC
Q ss_conf 69889709928--8399798154575432311---22222221001135520------------2211112221101122
Q gi|254781223|r 5 AVVRDCATVID--DARVSGNASVSRFAQVKSN---AEVSDNTYVRDNAKVGG------------YAKVSGNASVGGNAIV 67 (110)
Q Consensus 5 ~~I~~~a~I~~--~~~I~~n~~I~~~~~i~~~---~~i~~~~~i~~~~~i~~------------~~~i~~~~~i~~~~~~ 67 (110)
T Consensus 8 n~I~k~a~I~G~~nI~IG~~ssI~~~avirGD~~~I~IG~~~~I~d~~~I~~~~~~~~~~~~~~p~~IGd~v~Ig~~~~i 87 (161)
T cd03359 8 NKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVV 87 (161)
T ss_pred CEECCCCEEECCCCEEECCCCEECCCCEEECCCCCEEECCCCEECCCCEEECCCCCCCCCCCCCCCEECCCEEECCCEEE
T ss_conf 95877629978877599998789999689678865499998588899899246443577888877284898798998288
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCEECCCEEE
Q ss_conf 222110111111112432201397498499888899698097
Q gi|254781223|r 68 RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 (110)
Q Consensus 68 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I~~~~~i 109 (110)
T Consensus 88 ~-~~~Ig~~v~IG~~~~I~~g~~Ig~~~~I~~gsvV~~~~~i 128 (161)
T cd03359 88 N-AAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVI 128 (161)
T ss_pred E-CCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEE
T ss_conf 4-8896677155798199499799999899889898899898