HHsearch alignment for GI: 254781223 and conserved domain: cd03359
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.59 E-value=4.1e-15 Score=79.52 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=74.3
Q ss_pred CCCEEECCCEEECCC---CEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 687698897099288---39979815457543231122222221001135520221111222110112222211011111
Q gi|254781223|r 2 YDNAVVRDCATVIDD---ARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAF 78 (110)
Q Consensus 2 ~~n~~I~~~a~I~~~---~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~ 78 (110)
T Consensus 25 G~~ssI~~~avirGD~~~I~IG~~~~I~d~~~I~~~~~~~~~~~~~~p~~IGd~v~Ig~~~~i~-~~~Ig~~v~IG~~~~ 103 (161)
T cd03359 25 NGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVN-AAQIGSYVHIGKNCV 103 (161)
T ss_pred CCCCEECCCCEEECCCCCEEECCCCEECCCCEEECCCCCCCCCCCCCCCEECCCEEECCCEEEE-CCEECCCEEECCCCE
T ss_conf 9987899996896788654999985888998992464435778888772848987989982884-889667715579819
Q ss_pred CCCCCCCCCCEEECCCEEECCCCEECCCEEE
Q ss_conf 1112432201397498499888899698097
Q gi|254781223|r 79 VIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 (110)
Q Consensus 79 i~~~~~I~~~~~I~~~~~I~~~~~I~~~~~i 109 (110)
T Consensus 104 I~~g~~Ig~~~~I~~gsvV~~~~~ip~~~~~ 134 (161)
T cd03359 104 IGRRCIIKDCVKILDGTVVPPDTVIPPYSVV 134 (161)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEE
T ss_conf 9499799999899889898899898998199