HHsearch alignment for GI: 254781223 and conserved domain: cd04646
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.84 E-value=4e-21 Score=104.63 Aligned_cols=108 Identities=12% Similarity=0.209 Sum_probs=86.2
Q ss_pred CCCCEEECCCEEECCCCEECCCCEECCCCCCCCCC---CCCCCCCEEEEEEEEC----------CCCCCCCCCCCCCCCC
Q ss_conf 96876988970992883997981545754323112---2222221001135520----------2211112221101122
Q gi|254781223|r 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNA---EVSDNTYVRDNAKVGG----------YAKVSGNASVGGNAIV 67 (110)
Q Consensus 1 i~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~~---~i~~~~~i~~~~~i~~----------~~~i~~~~~i~~~~~~ 67 (110)
T Consensus 2 I~~~a~I~~~A~iiGdV~IG~~~sI~p~avIrgd~g~I~IG~~~nIqd~~~I~~~~~~~~~~g~~~~IG~~~~i~~g~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred CCCCCEECCCCEEEEEEEECCCCEECCCCEEEECCCCEEECCCCEECCCEEEECCCCCCCCCCCCEEECCCCEECCCEEE
T ss_conf 48987999999998217999999899575998143788989996666985994178777789988798899888678199
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCEECCCEEE
Q ss_conf 222110111111112432201397498499888899698097
Q gi|254781223|r 68 RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 (110)
Q Consensus 68 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I~~~~~i 109 (110)
T Consensus 82 h-~~~IG~~~lIg~~a~V~~ga~Ig~~ciIgags~V~~~~~i 122 (164)
T cd04646 82 E-ALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEIL 122 (164)
T ss_pred E-CCEECCCCEECCCCEECCCCEECCCCEECCCCCCCCCCEE
T ss_conf 5-5597678889689899999899999899989892899792