HHsearch alignment for GI: 254781223 and conserved domain: cd04649
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.60 E-value=1.8e-07 Score=47.68 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=62.0
Q ss_pred EEECCCEEECCCCEECCCCEECCCCCCCCCCCCCCCCC----EEEEEEEECCCCCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf 69889709928839979815457543231122222221----0011355202211112221101122--22211011111
Q gi|254781223|r 5 AVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTY----VRDNAKVGGYAKVSGNASVGGNAIV--RDTAEVGGDAF 78 (110)
Q Consensus 5 ~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~~~i~~~~~----i~~~~~i~~~~~i~~~~~i~~~~~~--~~~~~i~~~~~ 78 (110)
T Consensus 2 vRi~~~~~VRlGAyl~~Gt~vM~egfVN~nAgt~g~~Miegrissgv~VG~~~diggGasi~G~Ls~g~~~pi~Ig~ncl 81 (147)
T cd04649 2 VRIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCL 81 (147)
T ss_pred EEECCCCEEEECCEECCCCEECCCCEEEECCCCCCCCEEEEEEEECEEECCCCCCCCCCEEEEECCCCCCCCEEECCCEE
T ss_conf 37447866873418879959862567987663066616876785156989983327861787871678823569887507
Q ss_pred CCCCCCCCCCEEECCCEEECCCCEECCCEEE
Q ss_conf 1112432201397498499888899698097
Q gi|254781223|r 79 VIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 (110)
Q Consensus 79 i~~~~~I~~~~~I~~~~~I~~~~~I~~~~~i 109 (110)
T Consensus 82 iGAnsgi--Gi~lGd~cvv~aGlyi~~gTki 110 (147)
T cd04649 82 LGANSGI--GISLGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred ECCCCCC--CEEECCCCEEECCEEECCCCEE
T ss_conf 6146545--8486898688244598399789