RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage associated protein [Candidatus Liberibacter asiaticus str. psy62] (110 letters) >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334 Score = 54.9 bits (131), Expect = 4e-09 Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 3/110 (2%) Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKV-GGYAKVSGNA 59 + T+ ++V+ +A + +K + V + VR + + G+A Sbjct: 216 VIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHA 275 Query: 60 SVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 + G ++ E+ G A VI F +RG V+ G+ + ++ Sbjct: 276 CIQGEILIERQVEISGRAAVIAFD--DNTIHLRGPKVINGEDRITRTPLV 323 Score = 49.1 bits (116), Expect = 2e-07 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 8 RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67 ++ + A V A+V + E +R +++V +A + GN + + +V Sbjct: 193 LIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLV 252 Query: 68 RDTAEVGGDAFVIG-FTVISGNARVRGNAVVGGDTVVEGDTVLE 110 AEV G ++ +I G+A ++G ++ + G + Sbjct: 253 GGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVI 296 Score = 44.5 bits (104), Expect = 5e-06 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%) Query: 9 DCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVR 68 DC ++A ++ A++ + +N + DN A +S A + N ++ Sbjct: 58 DCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNV-WIDRADISDGARISDNVTIQ 116 Query: 69 DTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEG 105 + V + + G + + + + + Sbjct: 117 S-SSVREECAIYGDARVLNQSEILAIQGLTHEHAQIL 152 Score = 43.3 bits (101), Expect = 1e-05 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Query: 28 FAQVKSNAEVSDNTYVRD-NAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVIS 86 + + + ++ D NA +++GNA + + + GD I IS Sbjct: 46 WVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNV-RIGDNVWIDRADIS 104 Query: 87 GNARVRGNAVVGGDTVVEGDTV 108 AR+ N + +V E + Sbjct: 105 DGARISDNVTIQSSSVREECAI 126 Score = 42.1 bits (98), Expect = 3e-05 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 2 YDNAVVRDCATVIDDARVSGNASVSRFAQVK---SNAEVSDNTYVRDNAKVGGYAKVSGN 58 +++ + + +A ++ R + +N ++ D AKV G+A+V Sbjct: 160 VNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAG 219 Query: 59 ASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 +R +++V A + G V+ + V G+A V G ++ D VL Sbjct: 220 TEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVL 270 Score = 40.2 bits (93), Expect = 1e-04 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 1 MYDNAVVRDCATVIDD-ARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNA 59 + +A VR ++DD + G+A + ++ E+S V A + G Sbjct: 252 VGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAV--IAFDDNTIHLRGPK 309 Query: 60 SVGGNAIVRDTAEVG 74 + G + T VG Sbjct: 310 VINGEDRITRTPLVG 324 Score = 28.3 bits (62), Expect = 0.49 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 49 VGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTV 108 GG+ S G+ + D +A T I+GNAR+ + + + + Sbjct: 43 SGGWVDADNVLSQQGDCWIYD-----ENAMAFAGTEITGNARITQPCTLYNNVRIGDNVW 97 >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 Score = 37.9 bits (87), Expect = 5e-04 Identities = 7/51 (13%), Positives = 22/51 (43%) Query: 59 ASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 ++ +AI+++ +G + + I +R N + + + ++L Sbjct: 3 NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSIL 53 Score = 35.6 bits (81), Expect = 0.003 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 11 ATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGN--AIVR 68 A + + + N ++ + + DN +++ + +G + + N + Sbjct: 9 AIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKK 68 Query: 69 DTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 +G +A + VI G+ + N G + +T + Sbjct: 69 HPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKI 109 Score = 34.5 bits (78), Expect = 0.006 Identities = 7/57 (12%), Positives = 24/57 (42%) Query: 53 AKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 +S +A + I+ + + + ++ +I N ++ + +G +++ V Sbjct: 3 NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVD 59 Score = 29.1 bits (64), Expect = 0.27 Identities = 15/116 (12%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60 + DN T+ ++ ++ N + + ++ + + + + N VG + + Sbjct: 91 IGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVW 150 Query: 61 VGGNAIVRD----------TAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106 + + ++ + + A + +V+ + +A+VG VV D Sbjct: 151 LFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKD 206 Score = 25.2 bits (54), Expect = 3.4 Identities = 2/27 (7%), Positives = 10/27 (37%) Query: 84 VISGNARVRGNAVVGGDTVVEGDTVLE 110 +I + N + + ++ ++ Sbjct: 10 IIKEGVIIGENVTIEDNVYIDYGCIIR 36 >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259 Score = 36.5 bits (83), Expect = 0.001 Identities = 9/46 (19%), Positives = 21/46 (45%) Query: 64 NAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 AI+ AE+ V +++I GN ++ ++ G + + + Sbjct: 6 TAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEI 51 Score = 30.0 bits (66), Expect = 0.12 Identities = 10/64 (15%), Positives = 24/64 (37%) Query: 37 VSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAV 96 + + A++ +V + + GN +++ + G + + I R AV Sbjct: 3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAV 62 Query: 97 VGGD 100 +G Sbjct: 63 IGVM 66 >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 Score = 36.6 bits (83), Expect = 0.001 Identities = 13/108 (12%), Positives = 35/108 (32%), Gaps = 16/108 (14%) Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRD-----NAKVGGYAKV 55 + + A++ D + D + A+ + N +++ NA++G K+ Sbjct: 355 ISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKI 414 Query: 56 SGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103 +V A D + + +A++ ++ Sbjct: 415 INKDNVQEAARETDGYFIKSGIVTVI-----------KDALIPSGIII 451 Score = 29.6 bits (65), Expect = 0.18 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 1/89 (1%) Query: 22 NASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG 81 + V + +S+ + D+ +G + A +G + I Sbjct: 340 KNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNC-HIK 398 Query: 82 FTVISGNARVRGNAVVGGDTVVEGDTVLE 110 +I NAR+ N + V+ Sbjct: 399 RAIIDKNARIGDNVKIINKDNVQEAARET 427 >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics, joint center for structural genomics, JCSG; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496 Score = 36.5 bits (84), Expect = 0.001 Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 5/111 (4%) Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62 + D A + + + D V + + A + ASV Sbjct: 224 EFHYSFDKAILDKYISQEAGSCPTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVS 283 Query: 63 GNAIVRDTAEVGGDAFVIGFTVISG-----NARVRGNAVVGGDTVVEGDTV 108 G A+++ +G + V + + + N + + Sbjct: 284 GYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVT 334 Score = 27.6 bits (61), Expect = 0.78 Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 5/59 (8%) Query: 45 DNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103 + +AKV G ++G G F+ F A G Sbjct: 406 HSISFEEFAKVDGEVTMGRMTFRG-----KGGPFLDSFKKRIKRILSENGAFFDGSEGT 459 >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase; 1.80A {Yersinia pestis} PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A Length = 276 Score = 36.4 bits (84), Expect = 0.001 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 19/110 (17%) Query: 17 ARVSGNASVSRFAQVKSN-----------AEVSDNTYVRDNAKVGGYAKVSGNASVGGNA 65 RV A+V + A + N A V + T V A VG A++ N + G Sbjct: 105 FRVVPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGV 164 Query: 66 IVRDTAE--------VGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDT 107 + E + + FV + + V +V+ + T Sbjct: 165 GIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQST 214 Score = 25.6 bits (56), Expect = 2.9 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 4/77 (5%) Query: 4 NAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGG 63 A V CA + + +SG + + + DN VG ++V V Sbjct: 145 WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTI----IEDNCFVGARSEVVEGVIVEE 200 Query: 64 NAIVRDTAEVGGDAFVI 80 +++ +G + Sbjct: 201 GSVISMGVFIGQSTRIY 217 >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270 Score = 35.5 bits (81), Expect = 0.003 Identities = 8/64 (12%), Positives = 27/64 (42%) Query: 35 AEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGN 94 ++++ + A++ ++ +G + + ++ + + G T + N + Sbjct: 2 SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 61 Query: 95 AVVG 98 AV+G Sbjct: 62 AVLG 65 Score = 33.6 bits (76), Expect = 0.011 Identities = 9/51 (17%), Positives = 21/51 (41%) Query: 59 ASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 + + AI+ AE+ + F VI ++ + + ++G T + Sbjct: 2 SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFV 52 Score = 30.9 bits (69), Expect = 0.074 Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 53 AKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103 +K++ A + A + E+G + + ++ N + G T V Sbjct: 2 SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFV 52 Score = 28.6 bits (63), Expect = 0.39 Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 47 AKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106 +K+ A +S A + + + +G + + N ++G+ VG +T + Sbjct: 2 SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 61 Query: 107 TVL 109 VL Sbjct: 62 AVL 64 >1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel beta-helix, transferase; HET: COA UD1; 2.10A {Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A* 2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A* Length = 456 Score = 35.1 bits (79), Expect = 0.004 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 11/117 (9%) Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVS----DNTYVRDNAKVGGYAKVS 56 + ++A + T+ AR+ A + A V + E+ + G A++ Sbjct: 314 VVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIG 373 Query: 57 GNASVGGNAIV-------RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106 N ++G I + +G D FV T + V A + T V + Sbjct: 374 DNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRN 430 Score = 28.5 bits (62), Expect = 0.35 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 1/67 (1%) Query: 3 DNAVV-RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASV 61 DN + T D + V S+ ++ V A + V+ N Sbjct: 374 DNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGE 433 Query: 62 GGNAIVR 68 AI R Sbjct: 434 NALAISR 440 >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* Length = 456 Score = 35.0 bits (79), Expect = 0.004 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 2/99 (2%) Query: 9 DCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNA-IV 67 + GN + + V ++V+ TYV ++++G + Sbjct: 333 RPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYV-GDSEIGSNCNIGAGVITCNYDGAN 391 Query: 68 RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106 + +G D FV T + +V A +G T + D Sbjct: 392 KFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRD 430 >3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann-like fold, LEFT-handed-beta-helix, trimer, cell shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A 3d98_A* 3dj4_A 3foq_A 2qkx_A* Length = 495 Score = 34.7 bits (78), Expect = 0.005 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 1/62 (1%) Query: 40 NTYVRDNAKVG-GYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVG 98 + + + + +G V+ + + V G D + I A VV Sbjct: 380 DADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVR 439 Query: 99 GD 100 D Sbjct: 440 ED 441 Score = 27.4 bits (59), Expect = 0.78 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 2/58 (3%) Query: 10 CATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67 V D +V + S+ + D A G V + V A+ Sbjct: 393 SVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVRED--VPPGALA 448 >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase; acetyltransferase, bifunctional, crystallography, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A* 1g95_A* Length = 468 Score = 33.9 bits (76), Expect = 0.008 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 39 DNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVG 98 N V N G +G +V + + +G + FV + I + N++VG Sbjct: 376 GNCEVGSNVNFG-----AGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVG 430 Query: 99 GDTVVEGD 106 + + D Sbjct: 431 AGSTITKD 438 Score = 27.0 bits (58), Expect = 1.2 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 10 CATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67 TV D + + V SN+ + + DN+ VG + ++ + V +AI Sbjct: 390 TITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKD--VPADAIA 445 Score = 26.2 bits (56), Expect = 1.9 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 45 DNAKVGGYAKVSGNASVGGNAIV-RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103 +N K G + GN VG N T V D TVI N V N+ + + Sbjct: 365 ENTKAGHLTYI-GNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVEL 423 Query: 104 EGDTVL 109 ++++ Sbjct: 424 GDNSLV 429 >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 Score = 33.8 bits (76), Expect = 0.009 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 37 VSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAV 96 + + + + Y+++ NA V + + A++ VI + + Sbjct: 337 ALNRSLLFTGVRANSYSRLE-NAVVLPSVKIGRHAQLSN-------VVIDHGVVIPEGLI 388 Query: 97 VGGDTVVEG 105 VG D ++ Sbjct: 389 VGEDPELDA 397 Score = 29.5 bits (65), Expect = 0.16 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 2/56 (3%) Query: 55 VSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVLE 110 + + + + V + IG N + V+ +V D L+ Sbjct: 343 LFTGVRANSYSRLENA--VVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGEDPELD 396 Score = 27.6 bits (60), Expect = 0.64 Identities = 4/67 (5%), Positives = 25/67 (37%), Gaps = 4/67 (5%) Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGG--YAKVSGNAS 60 + + + V+ ++ +A +S + + + V ++ ++ + + Sbjct: 351 SYSRLENA-VVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGEDPELDAKRFRRTESGIC 408 Query: 61 VGGNAIV 67 + +++ Sbjct: 409 LITQSMI 415 >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262 Score = 33.3 bits (75), Expect = 0.013 Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 55 VSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTV 108 + +A V AIV + A +G +A + F ++ + + V+ VV G T Sbjct: 2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTK 55 Score = 28.3 bits (62), Expect = 0.48 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 31 VKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR 90 + +A V V + A +G NA +G IV E+G + V++G+ + Sbjct: 2 IDKSAFVHPTAIVEEGASIG------ANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTK 55 Query: 91 VRGN 94 + + Sbjct: 56 IGRD 59 >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374 Score = 32.3 bits (72), Expect = 0.025 Identities = 13/99 (13%), Positives = 40/99 (40%) Query: 8 RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67 + VI + V A+ + ++ V + + + + ++ +V ++ + A + Sbjct: 224 KHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGI 283 Query: 68 RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106 + ++G + G I+G+ + + ++ T V Sbjct: 284 AGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKS 322 >3cj8_A 2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase; APC86892, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.95A {Enterococcus faecalis V583} Length = 236 Score = 32.1 bits (72), Expect = 0.034 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 8/111 (7%) Query: 4 NAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGG 63 NA + A + + + A + A + A V T + A +GG A V + +G Sbjct: 91 NARIEPGALIREKVEIGDQAVIMMGAILNIGAVVGAGTMIDMGAVLGGRATVGKHCHIGA 150 Query: 64 NAI--------VRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106 + + + + V+ RV AVV VV D Sbjct: 151 GTVLAGVIEPPSAAPVVIENEVVIGANAVVLEGVRVGEGAVVAAGAVVVED 201 Score = 25.9 bits (56), Expect = 2.3 Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 44 RDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTV 102 N+ + NA + A++R+ E+G A ++ +++ A V ++ V Sbjct: 77 ARNSAIPFLDLKDINARIEPGALIREKVEIGDQAVIMMGAILNIGAVVGAGTMIDMGAV 135 >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 Score = 31.1 bits (69), Expect = 0.055 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 6/106 (5%) Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60 + V + I G++ ++ + +++ + KV K + Sbjct: 293 VEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGR 352 Query: 61 VGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106 A + G + I ++ A + VV D Sbjct: 353 RKLGAFIGGHVRTGIN------VTILPGVKIGAYARIYPGAVVNRD 392 >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A Length = 247 Score = 31.3 bits (70), Expect = 0.062 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 7/104 (6%) Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62 D V+ T+ ++ + V + + +N + ++V G A V + +G Sbjct: 110 DGVVLHALETINEEGEPIEDNIVEVDGKEY-AVYIGNNVSLAHQSQVHGPAAVGDDTFIG 168 Query: 63 GNAI-----VRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDT 101 A V + + + IG I + VV Sbjct: 169 MQAFVFKSKVGNNCVLEPRSAAIG-VTIPDGRYIPAGMVVTSQA 211 Score = 30.9 bits (69), Expect = 0.067 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 26/134 (19%) Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVK----SNAEVSDNTYVRDNAKVGGYAKVSGN 58 A + A+VI + + N VS A ++ V D + V+D + ++ Sbjct: 64 PTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEE 123 Query: 59 ASVGGNAIVRDTAEVGG----------------------DAFVIGFTVISGNARVRGNAV 96 + IV + D IG ++V N V Sbjct: 124 GEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCV 183 Query: 97 VGGDTVVEGDTVLE 110 + + G T+ + Sbjct: 184 LEPRSAAIGVTIPD 197 >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192 Score = 30.2 bits (67), Expect = 0.13 Identities = 14/74 (18%), Positives = 32/74 (43%) Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93 A + V + A++G ++++ + G A + + +G + FV I +++ Sbjct: 3 MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQN 62 Query: 94 NAVVGGDTVVEGDT 107 N V + +E D Sbjct: 63 NVSVYDNVFLEDDV 76 Score = 25.9 bits (56), Expect = 2.1 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 33/137 (24%) Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62 A + A V + AR+ ++ + + + AE+ + + N VG ++ + Sbjct: 2 HMATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQ 61 Query: 63 GNAIVRDTAE---------------------------------VGGDAFVIGFTVISGNA 89 N V D V A + + A Sbjct: 62 NNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGA 121 Query: 90 RVRGNAVVGGDTVVEGD 106 + A VG VV D Sbjct: 122 TIGRYAFVGAGAVVNKD 138 >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341 Score = 29.9 bits (66), Expect = 0.14 Identities = 12/76 (15%), Positives = 31/76 (40%) Query: 31 VKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR 90 + + + + + ++ + N +V G I+ + ++G + G +VI+G+ Sbjct: 219 ALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHME 278 Query: 91 VRGNAVVGGDTVVEGD 106 + V G +V Sbjct: 279 ICDKVTVTGMGMVMRP 294 Score = 25.3 bits (54), Expect = 3.0 Identities = 14/80 (17%), Positives = 32/80 (40%) Query: 22 NASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG 81 +A + A++ +N + N + ++G + VG N+ + + + + + Sbjct: 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH 162 Query: 82 FTVISGNARVRGNAVVGGDT 101 I N ++ VVG D Sbjct: 163 EIQIGQNCLIQSGTVVGADG 182 >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} Length = 310 Score = 29.5 bits (66), Expect = 0.16 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 33 SNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNA-----IVRDTAEVGGDAFVIGFTVISG 87 + + + +N + +G + N I+ D V +A ++G I Sbjct: 215 ATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGK 274 Query: 88 NARVRGNAVVGGDTVVEGDTV 108 A V GN V + V G + Sbjct: 275 GATVGGNIWVTEN-VPAGSRI 294 Score = 29.5 bits (66), Expect = 0.20 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 2/81 (2%) Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60 + N V + + + + + + + D+ V NA + G + A+ Sbjct: 218 IIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGKGAT 277 Query: 61 VGGNAIVRDTAEVGGDAFVIG 81 VGGN V T V + ++ Sbjct: 278 VGGNIWV--TENVPAGSRIVQ 296 Score = 28.7 bits (64), Expect = 0.30 Identities = 9/64 (14%), Positives = 18/64 (28%) Query: 4 NAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGG 63 + + G S + + + D+ V A + G ++G Sbjct: 215 ATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGK 274 Query: 64 NAIV 67 A V Sbjct: 275 GATV 278 >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 Length = 289 Score = 28.9 bits (64), Expect = 0.27 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 5/78 (6%) Query: 31 VKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR 90 V A + ++ + + +GG K G+ +R+ +G A ++G + A+ Sbjct: 180 VGETAVIENDVSILQSVTLGGTGKSGGDRHP----KIREGVMIGAGAKILGNIEVGRGAK 235 Query: 91 VRGNAVVGGDTVVEGDTV 108 + +VV V T Sbjct: 236 IGAGSVVLQP-VPPHTTA 252 >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} Length = 252 Score = 28.0 bits (62), Expect = 0.57 Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 6/110 (5%) Query: 3 DNAVVRDCATVIDDARVS-GNASV----SRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSG 57 N+ ++ ++V G + K N + + + + + Sbjct: 90 KNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPI 149 Query: 58 NASVGGNAIVRDTAEVGGDAFVIGF-TVISGNARVRGNAVVGGDTVVEGD 106 I + +G I V +V+G ++V D Sbjct: 150 FDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKD 199 >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapeptide repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} Length = 287 Score = 27.8 bits (61), Expect = 0.58 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 5/75 (6%) Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93 A V DN + +GG K SG + +R +G A ++G + +++ Sbjct: 190 TAVVEDNVSILHGVTLGGTGKSSG----DRHPKIRQGVLIGAGAKILGNIQVGQCSKIAA 245 Query: 94 NAVVGGDTVVEGDTV 108 +VV V TV Sbjct: 246 GSVVLKS-VPHNVTV 259 Score = 27.0 bits (59), Expect = 0.98 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSN--AEVSDNTYVRDNAKVGGYAKVSGN 58 VV + A V D+ + ++ + + ++ + AK+ G +V Sbjct: 181 HATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQC 240 Query: 59 ASVGGNAIVRDTAEVGGDAFVIG 81 + + ++V V + V G Sbjct: 241 SKIAAGSVV--LKSVPHNVTVAG 261 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 27.5 bits (60), Expect = 0.73 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 31/116 (26%) Query: 12 TVIDDARVSGNASVSRFAQV----KSNAEVSDNTYVRDNAKVGGYAK------------- 54 T ++ V+GN++ + +AQV ++N ++ D ++ +V A Sbjct: 762 TALEHKVVNGNSADAAYAQVEIQPRANIQL-DFPELKPYKQVKQIAPAELEGLLDLERVI 820 Query: 55 -VSGNASVG--GNAIVRDTAEVGGD---------AFVIGFTVISGNARVRGNAVVG 98 V+G A VG G+A R E G+ A+++GF + N ++G G Sbjct: 821 VVTGFAEVGPWGSARTRWEMEAFGEFSLEGCVEMAWIMGF-ISYHNGNLKGRPYTG 875 >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infectious disease; 1.61A {Anaplasma phagocytophilum} Length = 191 Score = 27.6 bits (60), Expect = 0.76 Identities = 8/33 (24%), Positives = 16/33 (48%) Query: 36 EVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVR 68 V ++ NA++ G + NAS+ ++R Sbjct: 35 SVDSTAFIAGNARIIGDVCIGKNASIWYGTVLR 67 Score = 24.9 bits (53), Expect = 4.2 Identities = 12/37 (32%), Positives = 18/37 (48%) Query: 70 TAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106 + V AF+ G I G+ + NA + TV+ GD Sbjct: 33 SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGD 69 Score = 24.1 bits (51), Expect = 7.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 69 DTAEVGGDAFVIGFTVISGNARVRGNAVVGGD 100 TA + G+A +IG I NA + V+ GD Sbjct: 38 STAFIAGNARIIGDVCIGKNASIWYGTVLRGD 69 >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta helix; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* Length = 215 Score = 27.0 bits (59), Expect = 0.97 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 5/105 (4%) Query: 9 DCATVIDDARVSGNASVSRFAQVK----SNAEVSDNTYVRDNAKVGGYAKVSGN-ASVGG 63 DC+ I GN ++ + K + ++ +R+ Y+ +G + G Sbjct: 77 DCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGK 136 Query: 64 NAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTV 108 + I+ + +G + ++ I N V + V+ + Sbjct: 137 DVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVI 181 >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken structural genomics/proteomics initiative; 1.50A {Pyrococcus horikoshii OT3} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A Length = 173 Score = 26.8 bits (58), Expect = 1.3 Identities = 8/32 (25%), Positives = 14/32 (43%) Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNA 65 + + +V +NA V G + SV +A Sbjct: 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSA 41 >2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Score = 26.3 bits (57), Expect = 1.7 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Query: 8 RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67 R C ++ + +S + Q+ + + V D ++ G ++GN V + I+ Sbjct: 46 RSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNG--TFINGNRLVKKDYIL 103 Query: 68 RDTAEVGGDAFVIGFTV 84 ++ GD V G + Sbjct: 104 KN-----GDRIVFGKSC 115 >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* Length = 209 Score = 26.1 bits (57), Expect = 1.9 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 1/69 (1%) Query: 28 FAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG-FTVIS 86 KS + +N +VG Y+ + + + D IG F I Sbjct: 11 IEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIG 70 Query: 87 GNARVRGNA 95 + N Sbjct: 71 PGVTIIMNG 79 >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 Length = 182 Score = 25.7 bits (56), Expect = 2.9 Identities = 13/73 (17%), Positives = 24/73 (32%) Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93 + DN + + + A + +G + ++ G VI+ + Sbjct: 92 PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 151 Query: 94 NAVVGGDTVVEGD 106 N VV VV D Sbjct: 152 NVVVASGAVVTKD 164 >2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis KOD1} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A Length = 338 Score = 25.0 bits (53), Expect = 3.9 Identities = 9/34 (26%), Positives = 15/34 (44%) Query: 71 AEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVE 104 E G +A +IG + +V +GG +E Sbjct: 294 TEKGRNAAIIGEVIADYRGKVLLETGIGGKRFME 327 >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* Length = 203 Score = 25.0 bits (54), Expect = 4.6 Identities = 11/73 (15%), Positives = 26/73 (35%) Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93 + DN + N + + + +G + ++ VI+ + Sbjct: 95 TVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154 Query: 94 NAVVGGDTVVEGD 106 N+V+G ++V D Sbjct: 155 NSVIGAGSIVTKD 167 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 23.7 bits (51), Expect = 9.0 Identities = 4/19 (21%), Positives = 6/19 (31%), Gaps = 4/19 (21%) Query: 2 YDNA----VVRDCATVIDD 16 + V C V+ D Sbjct: 36 ERFSEGDVVCALCGLVLSD 54 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.313 0.131 0.358 Gapped Lambda K H 0.267 0.0491 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 823,077 Number of extensions: 30884 Number of successful extensions: 262 Number of sequences better than 10.0: 1 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 85 Length of query: 110 Length of database: 5,693,230 Length adjustment: 74 Effective length of query: 36 Effective length of database: 3,899,174 Effective search space: 140370264 Effective search space used: 140370264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 50 (23.6 bits)