RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage
associated protein [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2,
           protein structure initiative, northeast structural
           genomics consortium; 2.38A {Salmonella paratyphi} PDB:
           2f9c_A
          Length = 334

 Score = 54.9 bits (131), Expect = 4e-09
 Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 1   MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKV-GGYAKVSGNA 59
           +          T+   ++V+ +A +     +K +  V  +  VR    +      + G+A
Sbjct: 216 VIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHA 275

Query: 60  SVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
            + G  ++    E+ G A VI F        +RG  V+ G+  +    ++
Sbjct: 276 CIQGEILIERQVEISGRAAVIAFD--DNTIHLRGPKVINGEDRITRTPLV 323



 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 8   RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67
                  ++  +   A V   A+V +  E      +R +++V  +A + GN  +  + +V
Sbjct: 193 LIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLV 252

Query: 68  RDTAEVGGDAFVIG-FTVISGNARVRGNAVVGGDTVVEGDTVLE 110
              AEV G   ++    +I G+A ++G  ++     + G   + 
Sbjct: 253 GGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVI 296



 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 9   DCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVR 68
           DC    ++A       ++  A++     + +N  + DN      A +S  A +  N  ++
Sbjct: 58  DCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNV-WIDRADISDGARISDNVTIQ 116

Query: 69  DTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEG 105
             + V  +  + G   +   + +     +  +     
Sbjct: 117 S-SSVREECAIYGDARVLNQSEILAIQGLTHEHAQIL 152



 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 28  FAQVKSNAEVSDNTYVRD-NAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVIS 86
           +    +      + ++ D NA      +++GNA +     + +     GD   I    IS
Sbjct: 46  WVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNV-RIGDNVWIDRADIS 104

Query: 87  GNARVRGNAVVGGDTVVEGDTV 108
             AR+  N  +   +V E   +
Sbjct: 105 DGARISDNVTIQSSSVREECAI 126



 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 2   YDNAVVRDCATVIDDARVSGNASVSRFAQVK---SNAEVSDNTYVRDNAKVGGYAKVSGN 58
            +++ +     +  +A ++      R           +  +N ++ D AKV G+A+V   
Sbjct: 160 VNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAG 219

Query: 59  ASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
                   +R +++V   A + G  V+  +  V G+A V G  ++  D VL
Sbjct: 220 TEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVL 270



 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 1   MYDNAVVRDCATVIDD-ARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNA 59
           +  +A VR    ++DD   + G+A +     ++   E+S    V   A       + G  
Sbjct: 252 VGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAV--IAFDDNTIHLRGPK 309

Query: 60  SVGGNAIVRDTAEVG 74
            + G   +  T  VG
Sbjct: 310 VINGEDRITRTPLVG 324



 Score = 28.3 bits (62), Expect = 0.49
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 49  VGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTV 108
            GG+       S  G+  + D      +A     T I+GNAR+     +  +  +  +  
Sbjct: 43  SGGWVDADNVLSQQGDCWIYD-----ENAMAFAGTEITGNARITQPCTLYNNVRIGDNVW 97


>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO;
           1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB:
           3fsb_A* 3fsc_A*
          Length = 273

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 7/51 (13%), Positives = 22/51 (43%)

Query: 59  ASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
            ++  +AI+++   +G +  +     I     +R N  +   + +   ++L
Sbjct: 3   NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSIL 53



 Score = 35.6 bits (81), Expect = 0.003
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 11  ATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGN--AIVR 68
           A + +   +  N ++     +     + DN +++  + +G  + +        N     +
Sbjct: 9   AIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKK 68

Query: 69  DTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
               +G +A +    VI G+  +  N   G    +  +T +
Sbjct: 69  HPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKI 109



 Score = 34.5 bits (78), Expect = 0.006
 Identities = 7/57 (12%), Positives = 24/57 (42%)

Query: 53  AKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
             +S +A +    I+ +   +  + ++    +I  N  ++  + +G  +++    V 
Sbjct: 3   NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVD 59



 Score = 29.1 bits (64), Expect = 0.27
 Identities = 15/116 (12%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 1   MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60
           + DN       T+ ++ ++  N  +   + ++ +  + +   +  N  VG  + +     
Sbjct: 91  IGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVW 150

Query: 61  VGGNAIVRD----------TAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
           +  + ++ +             +   A +   +V+     +  +A+VG   VV  D
Sbjct: 151 LFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKD 206



 Score = 25.2 bits (54), Expect = 3.4
 Identities = 2/27 (7%), Positives = 10/27 (37%)

Query: 84  VISGNARVRGNAVVGGDTVVEGDTVLE 110
           +I     +  N  +  +  ++   ++ 
Sbjct: 10  IIKEGVIIGENVTIEDNVYIDYGCIIR 36


>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
           O-acyltransferase; L.interrogans LPXA, LPXA, LPXA
           acyltransferase; 2.10A {Leptospira interrogans} PDB:
           3i3a_A* 3i3x_A*
          Length = 259

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 64  NAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
            AI+   AE+     V  +++I GN  ++   ++ G   +   + +
Sbjct: 6   TAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEI 51



 Score = 30.0 bits (66), Expect = 0.12
 Identities = 10/64 (15%), Positives = 24/64 (37%)

Query: 37  VSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAV 96
           +     +   A++    +V   + + GN  +++   + G   +   + I    R    AV
Sbjct: 3   IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAV 62

Query: 97  VGGD 100
           +G  
Sbjct: 63  IGVM 66


>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
           synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
           PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
           PDB: 1yp3_A* 1yp4_A*
          Length = 451

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 13/108 (12%), Positives = 35/108 (32%), Gaps = 16/108 (14%)

Query: 1   MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRD-----NAKVGGYAKV 55
           + + A++ D   +  D   +        A+      +  N +++      NA++G   K+
Sbjct: 355 ISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKI 414

Query: 56  SGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103
               +V   A   D   +      +             +A++    ++
Sbjct: 415 INKDNVQEAARETDGYFIKSGIVTVI-----------KDALIPSGIII 451



 Score = 29.6 bits (65), Expect = 0.18
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 1/89 (1%)

Query: 22  NASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG 81
                  + V   + +S+   + D+  +G     +        A       +G +   I 
Sbjct: 340 KNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNC-HIK 398

Query: 82  FTVISGNARVRGNAVVGGDTVVEGDTVLE 110
             +I  NAR+  N  +     V+      
Sbjct: 399 RAIIDKNARIGDNVKIINKDNVQEAARET 427


>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics, joint
           center for structural genomics, JCSG; 2.28A
           {Desulfovibrio desulfuricans subsp}
          Length = 496

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 5/111 (4%)

Query: 3   DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62
           +     D A +         +  +            D   V  +  +   A  +  ASV 
Sbjct: 224 EFHYSFDKAILDKYISQEAGSCPTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVS 283

Query: 63  GNAIVRDTAEVGGDAFVIGFTVISG-----NARVRGNAVVGGDTVVEGDTV 108
           G A+++    +G +  V     +        +  + N  +    +      
Sbjct: 284 GYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVT 334



 Score = 27.6 bits (61), Expect = 0.78
 Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 5/59 (8%)

Query: 45  DNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103
            +     +AKV G  ++G            G  F+  F            A   G    
Sbjct: 406 HSISFEEFAKVDGEVTMGRMTFRG-----KGGPFLDSFKKRIKRILSENGAFFDGSEGT 459


>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-
           succinyltransferase;
           2,3,4,5-tetrahydropyridine-2-carboxylate N-
           succinyltransferase; 1.80A {Yersinia pestis} PDB:
           1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A
          Length = 276

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 19/110 (17%)

Query: 17  ARVSGNASVSRFAQVKSN-----------AEVSDNTYVRDNAKVGGYAKVSGNASVGGNA 65
            RV   A+V + A +  N           A V + T V   A VG  A++  N  + G  
Sbjct: 105 FRVVPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGV 164

Query: 66  IVRDTAE--------VGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDT 107
            +    E        +  + FV   + +     V   +V+     +   T
Sbjct: 165 GIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQST 214



 Score = 25.6 bits (56), Expect = 2.9
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 4   NAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGG 63
            A V  CA +  +  +SG   +    +            + DN  VG  ++V     V  
Sbjct: 145 WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTI----IEDNCFVGARSEVVEGVIVEE 200

Query: 64  NAIVRDTAEVGGDAFVI 80
            +++     +G    + 
Sbjct: 201 GSVISMGVFIGQSTRIY 217


>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
          O-acyltransferase; UDP-N-acetylglucosamine
          acyltransferase, LPXA; HET: SOG TLA; 2.10A
          {Helicobacter pylori} SCOP: b.81.1.1
          Length = 270

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 8/64 (12%), Positives = 27/64 (42%)

Query: 35 AEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGN 94
          ++++    +   A++    ++     +G    + +  ++  +  + G T +  N  +   
Sbjct: 2  SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 61

Query: 95 AVVG 98
          AV+G
Sbjct: 62 AVLG 65



 Score = 33.6 bits (76), Expect = 0.011
 Identities = 9/51 (17%), Positives = 21/51 (41%)

Query: 59  ASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
           + +   AI+   AE+     +  F VI    ++     +  +  ++G T +
Sbjct: 2   SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFV 52



 Score = 30.9 bits (69), Expect = 0.074
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 53  AKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103
           +K++  A +   A +    E+G    +     +    ++  N  + G T V
Sbjct: 2   SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFV 52



 Score = 28.6 bits (63), Expect = 0.39
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 47  AKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
           +K+   A +S  A +     + +   +G    +     +  N  ++G+  VG +T +   
Sbjct: 2   SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 61

Query: 107 TVL 109
            VL
Sbjct: 62  AVL 64


>1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel
           beta-helix, transferase; HET: COA UD1; 2.10A
           {Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A*
           2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A*
          Length = 456

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 1   MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVS----DNTYVRDNAKVGGYAKVS 56
           + ++A +    T+   AR+   A +   A V +  E+            +    G A++ 
Sbjct: 314 VVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIG 373

Query: 57  GNASVGGNAIV-------RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
            N ++G   I        +    +G D FV   T +     V   A +   T V  +
Sbjct: 374 DNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRN 430



 Score = 28.5 bits (62), Expect = 0.35
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 1/67 (1%)

Query: 3   DNAVV-RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASV 61
           DN  +     T   D        +     V S+ ++     V   A +     V+ N   
Sbjct: 374 DNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGE 433

Query: 62  GGNAIVR 68
              AI R
Sbjct: 434 NALAISR 440


>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
           transferase, peptidoglycan synthesis, associative
           mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
           2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A*
          Length = 456

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 2/99 (2%)

Query: 9   DCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNA-IV 67
                +      GN    + + V   ++V+  TYV  ++++G    +             
Sbjct: 333 RPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYV-GDSEIGSNCNIGAGVITCNYDGAN 391

Query: 68  RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
           +    +G D FV   T +    +V   A +G  T +  D
Sbjct: 392 KFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRD 430


>3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
           rossmann-like fold, LEFT-handed-beta-helix, trimer, cell
           shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A
           3d98_A* 3dj4_A 3foq_A 2qkx_A*
          Length = 495

 Score = 34.7 bits (78), Expect = 0.005
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 40  NTYVRDNAKVG-GYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVG 98
           +  + + + +G     V+ + +      V      G D   +    I   A      VV 
Sbjct: 380 DADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVR 439

Query: 99  GD 100
            D
Sbjct: 440 ED 441



 Score = 27.4 bits (59), Expect = 0.78
 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 2/58 (3%)

Query: 10  CATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67
              V  D       +V    +  S+        + D A  G    V  +  V   A+ 
Sbjct: 393 SVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVRED--VPPGALA 448


>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase;
           acetyltransferase, bifunctional, crystallography, drug
           design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae}
           SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A*
           1g95_A*
          Length = 468

 Score = 33.9 bits (76), Expect = 0.008
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 39  DNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVG 98
            N  V  N   G     +G  +V  +   +    +G + FV   + I     +  N++VG
Sbjct: 376 GNCEVGSNVNFG-----AGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVG 430

Query: 99  GDTVVEGD 106
             + +  D
Sbjct: 431 AGSTITKD 438



 Score = 27.0 bits (58), Expect = 1.2
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 10  CATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67
             TV  D +      +     V SN+ +     + DN+ VG  + ++ +  V  +AI 
Sbjct: 390 TITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKD--VPADAIA 445



 Score = 26.2 bits (56), Expect = 1.9
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 45  DNAKVGGYAKVSGNASVGGNAIV-RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103
           +N K G    + GN  VG N      T  V  D      TVI  N  V  N+ +     +
Sbjct: 365 ENTKAGHLTYI-GNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVEL 423

Query: 104 EGDTVL 109
             ++++
Sbjct: 424 GDNSLV 429


>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose
           pyrophosphorylase, allostery, kinetics,
           structure-function relationships; 2.10A {Agrobacterium
           tumefaciens}
          Length = 420

 Score = 33.8 bits (76), Expect = 0.009
 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 37  VSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAV 96
             + + +    +   Y+++  NA V  +  +   A++          VI     +    +
Sbjct: 337 ALNRSLLFTGVRANSYSRLE-NAVVLPSVKIGRHAQLSN-------VVIDHGVVIPEGLI 388

Query: 97  VGGDTVVEG 105
           VG D  ++ 
Sbjct: 389 VGEDPELDA 397



 Score = 29.5 bits (65), Expect = 0.16
 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 55  VSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVLE 110
           +         + + +   V   +  IG      N  +    V+    +V  D  L+
Sbjct: 343 LFTGVRANSYSRLENA--VVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGEDPELD 396



 Score = 27.6 bits (60), Expect = 0.64
 Identities = 4/67 (5%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 3   DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGG--YAKVSGNAS 60
             + + +   V+   ++  +A +S    +     + +   V ++ ++    + +      
Sbjct: 351 SYSRLENA-VVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGEDPELDAKRFRRTESGIC 408

Query: 61  VGGNAIV 67
           +   +++
Sbjct: 409 LITQSMI 415


>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta
           helix; HET: U20; 1.74A {Escherichia coli K12} SCOP:
           b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
          Length = 262

 Score = 33.3 bits (75), Expect = 0.013
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 55  VSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTV 108
           +  +A V   AIV + A +G +A +  F ++  +  +    V+    VV G T 
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTK 55



 Score = 28.3 bits (62), Expect = 0.48
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 31 VKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR 90
          +  +A V     V + A +G       NA +G   IV    E+G    +    V++G+ +
Sbjct: 2  IDKSAFVHPTAIVEEGASIG------ANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTK 55

Query: 91 VRGN 94
          +  +
Sbjct: 56 IGRD 59


>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
           UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
           biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
           PDB: 2iu9_A* 2iua_A*
          Length = 374

 Score = 32.3 bits (72), Expect = 0.025
 Identities = 13/99 (13%), Positives = 40/99 (40%)

Query: 8   RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67
           +    VI +  V   A+ +       ++ V + + + +  ++    +V  ++ +   A +
Sbjct: 224 KHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGI 283

Query: 68  RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
             + ++G    + G   I+G+  +  + ++   T V   
Sbjct: 284 AGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKS 322


>3cj8_A 2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase;
           APC86892, structural genomics, PSI-2, protein structure
           initiative; HET: MSE; 1.95A {Enterococcus faecalis V583}
          Length = 236

 Score = 32.1 bits (72), Expect = 0.034
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 8/111 (7%)

Query: 4   NAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGG 63
           NA +   A + +   +   A +   A +   A V   T +   A +GG A V  +  +G 
Sbjct: 91  NARIEPGALIREKVEIGDQAVIMMGAILNIGAVVGAGTMIDMGAVLGGRATVGKHCHIGA 150

Query: 64  NAI--------VRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
             +              +  +  +    V+    RV   AVV    VV  D
Sbjct: 151 GTVLAGVIEPPSAAPVVIENEVVIGANAVVLEGVRVGEGAVVAAGAVVVED 201



 Score = 25.9 bits (56), Expect = 2.3
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 44  RDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTV 102
             N+ +        NA +   A++R+  E+G  A ++   +++  A V    ++    V
Sbjct: 77  ARNSAIPFLDLKDINARIEPGALIREKVEIGDQAVIMMGAILNIGAVVGAGTMIDMGAV 135


>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
           beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
          Length = 401

 Score = 31.1 bits (69), Expect = 0.055
 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 6/106 (5%)

Query: 1   MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60
           +     V    + I      G++ ++      +   +++  +     KV    K   +  
Sbjct: 293 VEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGR 352

Query: 61  VGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
               A +      G +        I    ++   A +    VV  D
Sbjct: 353 RKLGAFIGGHVRTGIN------VTILPGVKIGAYARIYPGAVVNRD 392


>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina
           thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A
           1qrm_A 1qrl_A 1thj_A
          Length = 247

 Score = 31.3 bits (70), Expect = 0.062
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 3   DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62
           D  V+    T+ ++     +  V    +      + +N  +   ++V G A V  +  +G
Sbjct: 110 DGVVLHALETINEEGEPIEDNIVEVDGKEY-AVYIGNNVSLAHQSQVHGPAAVGDDTFIG 168

Query: 63  GNAI-----VRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDT 101
             A      V +   +   +  IG   I     +    VV    
Sbjct: 169 MQAFVFKSKVGNNCVLEPRSAAIG-VTIPDGRYIPAGMVVTSQA 211



 Score = 30.9 bits (69), Expect = 0.067
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 26/134 (19%)

Query: 3   DNAVVRDCATVIDDARVSGNASVSRFAQVK----SNAEVSDNTYVRDNAKVGGYAKVSGN 58
             A +   A+VI +  +  N  VS  A ++        V D + V+D   +     ++  
Sbjct: 64  PTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEE 123

Query: 59  ASVGGNAIVRDTAEVGG----------------------DAFVIGFTVISGNARVRGNAV 96
                + IV    +                         D   IG       ++V  N V
Sbjct: 124 GEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCV 183

Query: 97  VGGDTVVEGDTVLE 110
           +   +   G T+ +
Sbjct: 184 LEPRSAAIGVTIPD 197


>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix,
           acetyl transferase, transferase; HET: ACO U5P UDP PE4;
           1.43A {Bordetella petrii} PDB: 3mqh_A*
          Length = 192

 Score = 30.2 bits (67), Expect = 0.13
 Identities = 14/74 (18%), Positives = 32/74 (43%)

Query: 34  NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93
            A +     V + A++G ++++     + G A + +   +G + FV     I    +++ 
Sbjct: 3   MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQN 62

Query: 94  NAVVGGDTVVEGDT 107
           N  V  +  +E D 
Sbjct: 63  NVSVYDNVFLEDDV 76



 Score = 25.9 bits (56), Expect = 2.1
 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 33/137 (24%)

Query: 3   DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62
             A +   A V + AR+  ++ +  +  +   AE+ +   +  N  VG   ++     + 
Sbjct: 2   HMATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQ 61

Query: 63  GNAIVRDTAE---------------------------------VGGDAFVIGFTVISGNA 89
            N  V D                                    V   A +     +   A
Sbjct: 62  NNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGA 121

Query: 90  RVRGNAVVGGDTVVEGD 106
            +   A VG   VV  D
Sbjct: 122 TIGRYAFVGAGAVVNKD 138


>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
           LEFT-handed parallel beta helix, acyl carrier protein,
           antibiotic resistance; 2.60A {Escherichia coli}
          Length = 341

 Score = 29.9 bits (66), Expect = 0.14
 Identities = 12/76 (15%), Positives = 31/76 (40%)

Query: 31  VKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR 90
              +  + +   + +  ++     +  N +V G  I+  + ++G    + G +VI+G+  
Sbjct: 219 ALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHME 278

Query: 91  VRGNAVVGGDTVVEGD 106
           +     V G  +V   
Sbjct: 279 ICDKVTVTGMGMVMRP 294



 Score = 25.3 bits (54), Expect = 3.0
 Identities = 14/80 (17%), Positives = 32/80 (40%)

Query: 22  NASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG 81
           +A +   A++ +N  +  N  +    ++G    +     VG N+ +   + +  +  +  
Sbjct: 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH 162

Query: 82  FTVISGNARVRGNAVVGGDT 101
              I  N  ++   VVG D 
Sbjct: 163 EIQIGQNCLIQSGTVVGADG 182


>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
           structural genomics, PSI-2, protein structure
           initiative; 2.00A {Bacteroides vulgatus atcc 8482}
          Length = 310

 Score = 29.5 bits (66), Expect = 0.16
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 33  SNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNA-----IVRDTAEVGGDAFVIGFTVISG 87
           + + + +N  +     +G  +    N            I+ D   V  +A ++G   I  
Sbjct: 215 ATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGK 274

Query: 88  NARVRGNAVVGGDTVVEGDTV 108
            A V GN  V  + V  G  +
Sbjct: 275 GATVGGNIWVTEN-VPAGSRI 294



 Score = 29.5 bits (66), Expect = 0.20
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 1   MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60
           +  N V       +       + + +    +  +  + D+  V  NA + G   +   A+
Sbjct: 218 IIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGKGAT 277

Query: 61  VGGNAIVRDTAEVGGDAFVIG 81
           VGGN  V  T  V   + ++ 
Sbjct: 278 VGGNIWV--TENVPAGSRIVQ 296



 Score = 28.7 bits (64), Expect = 0.30
 Identities = 9/64 (14%), Positives = 18/64 (28%)

Query: 4   NAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGG 63
              +      +      G  S            +  +  + D+  V   A + G  ++G 
Sbjct: 215 ATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGK 274

Query: 64  NAIV 67
            A V
Sbjct: 275 GATV 278


>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of
           trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6
          Length = 289

 Score = 28.9 bits (64), Expect = 0.27
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 31  VKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR 90
           V   A + ++  +  +  +GG  K  G+        +R+   +G  A ++G   +   A+
Sbjct: 180 VGETAVIENDVSILQSVTLGGTGKSGGDRHP----KIREGVMIGAGAKILGNIEVGRGAK 235

Query: 91  VRGNAVVGGDTVVEGDTV 108
           +   +VV    V    T 
Sbjct: 236 IGAGSVVLQP-VPPHTTA 252


>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix
           polysia; HET: PEG; 1.70A {Escherichia coli}
          Length = 252

 Score = 28.0 bits (62), Expect = 0.57
 Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 6/110 (5%)

Query: 3   DNAVVRDCATVIDDARVS-GNASV----SRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSG 57
            N+ ++        ++V  G  +           K N  +  +  +  +  +        
Sbjct: 90  KNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPI 149

Query: 58  NASVGGNAIVRDTAEVGGDAFVIGF-TVISGNARVRGNAVVGGDTVVEGD 106
                   I      +      +G    I     V   +V+G  ++V  D
Sbjct: 150 FDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKD 199


>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapeptide repeat:serine
           O-acetyltransferase...; ssgcid, structural genomics;
           1.95A {Brucella melitensis biovar abortus}
          Length = 287

 Score = 27.8 bits (61), Expect = 0.58
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 34  NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93
            A V DN  +     +GG  K SG      +  +R    +G  A ++G   +   +++  
Sbjct: 190 TAVVEDNVSILHGVTLGGTGKSSG----DRHPKIRQGVLIGAGAKILGNIQVGQCSKIAA 245

Query: 94  NAVVGGDTVVEGDTV 108
            +VV    V    TV
Sbjct: 246 GSVVLKS-VPHNVTV 259



 Score = 27.0 bits (59), Expect = 0.98
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 1   MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSN--AEVSDNTYVRDNAKVGGYAKVSGN 58
                VV + A V D+  +    ++    +   +   ++     +   AK+ G  +V   
Sbjct: 181 HATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQC 240

Query: 59  ASVGGNAIVRDTAEVGGDAFVIG 81
           + +   ++V     V  +  V G
Sbjct: 241 SKIAAGSVV--LKSVPHNVTVAG 261


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 27.5 bits (60), Expect = 0.73
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 31/116 (26%)

Query: 12  TVIDDARVSGNASVSRFAQV----KSNAEVSDNTYVRDNAKVGGYAK------------- 54
           T ++   V+GN++ + +AQV    ++N ++ D   ++   +V   A              
Sbjct: 762 TALEHKVVNGNSADAAYAQVEIQPRANIQL-DFPELKPYKQVKQIAPAELEGLLDLERVI 820

Query: 55  -VSGNASVG--GNAIVRDTAEVGGD---------AFVIGFTVISGNARVRGNAVVG 98
            V+G A VG  G+A  R   E  G+         A+++GF +   N  ++G    G
Sbjct: 821 VVTGFAEVGPWGSARTRWEMEAFGEFSLEGCVEMAWIMGF-ISYHNGNLKGRPYTG 875


>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle
          structural genomics center for infectious disease;
          1.61A {Anaplasma phagocytophilum}
          Length = 191

 Score = 27.6 bits (60), Expect = 0.76
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 36 EVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVR 68
           V    ++  NA++ G   +  NAS+    ++R
Sbjct: 35 SVDSTAFIAGNARIIGDVCIGKNASIWYGTVLR 67



 Score = 24.9 bits (53), Expect = 4.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 70  TAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
           +  V   AF+ G   I G+  +  NA +   TV+ GD
Sbjct: 33  SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGD 69



 Score = 24.1 bits (51), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 69  DTAEVGGDAFVIGFTVISGNARVRGNAVVGGD 100
            TA + G+A +IG   I  NA +    V+ GD
Sbjct: 38  STAFIAGNARIIGDVCIGKNASIWYGTVLRGD 69


>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta
           helix; HET: SOP; 1.90A {Neisseria meningitidis serogroup
           Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*
          Length = 215

 Score = 27.0 bits (59), Expect = 0.97
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 9   DCATVIDDARVSGNASVSRFAQVK----SNAEVSDNTYVRDNAKVGGYAKVSGN-ASVGG 63
           DC+  I      GN  ++   + K     +  ++    +R+      Y+  +G   + G 
Sbjct: 77  DCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGK 136

Query: 64  NAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTV 108
           + I+ +   +G +  ++    I  N  V  + V+          +
Sbjct: 137 DVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVI 181


>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase,
          structural genomics, riken structural
          genomics/proteomics initiative; 1.50A {Pyrococcus
          horikoshii OT3} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A
          Length = 173

 Score = 26.8 bits (58), Expect = 1.3
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNA 65
             +  + +V +NA V G   +    SV  +A
Sbjct: 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSA 41


>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide,
           cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae}
           PDB: 2jql_A*
          Length = 151

 Score = 26.3 bits (57), Expect = 1.7
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 8   RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67
           R C  ++ +  +S   +     Q+  +    +   V D ++ G    ++GN  V  + I+
Sbjct: 46  RSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNG--TFINGNRLVKKDYIL 103

Query: 68  RDTAEVGGDAFVIGFTV 84
           ++     GD  V G + 
Sbjct: 104 KN-----GDRIVFGKSC 115


>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel
          beta-helix domain; 1.80A {Enterococcus faecium} SCOP:
          b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A*
          1mrl_A* 3dho_A*
          Length = 209

 Score = 26.1 bits (57), Expect = 1.9
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 1/69 (1%)

Query: 28 FAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG-FTVIS 86
              KS   +       +N +VG Y+          +  +     +  D   IG F  I 
Sbjct: 11 IEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIG 70

Query: 87 GNARVRGNA 95
              +  N 
Sbjct: 71 PGVTIIMNG 79


>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A
           {Escherichia coli} SCOP: b.81.1.3
          Length = 182

 Score = 25.7 bits (56), Expect = 2.9
 Identities = 13/73 (17%), Positives = 24/73 (32%)

Query: 34  NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93
              + DN  +     +          +    A +     +G + ++ G  VI+    +  
Sbjct: 92  PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 151

Query: 94  NAVVGGDTVVEGD 106
           N VV    VV  D
Sbjct: 152 NVVVASGAVVTKD 164


>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
           maturation, ATPase, transferase; 1.55A {Thermococcus
           kodakarensis KOD1} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
          Length = 338

 Score = 25.0 bits (53), Expect = 3.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 71  AEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVE 104
            E G +A +IG  +     +V     +GG   +E
Sbjct: 294 TEKGRNAAIIGEVIADYRGKVLLETGIGGKRFME 327


>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix;
           HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB:
           1kqa_A* 1kru_A* 1krv_A*
          Length = 203

 Score = 25.0 bits (54), Expect = 4.6
 Identities = 11/73 (15%), Positives = 26/73 (35%)

Query: 34  NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93
              + DN  +  N  +        +       +      +G + ++    VI+    +  
Sbjct: 95  TVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154

Query: 94  NAVVGGDTVVEGD 106
           N+V+G  ++V  D
Sbjct: 155 NSVIGAGSIVTKD 167


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 23.7 bits (51), Expect = 9.0
 Identities = 4/19 (21%), Positives = 6/19 (31%), Gaps = 4/19 (21%)

Query: 2  YDNA----VVRDCATVIDD 16
             +    V   C  V+ D
Sbjct: 36 ERFSEGDVVCALCGLVLSD 54


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.313    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0491    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 823,077
Number of extensions: 30884
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 85
Length of query: 110
Length of database: 5,693,230
Length adjustment: 74
Effective length of query: 36
Effective length of database: 3,899,174
Effective search space: 140370264
Effective search space used: 140370264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)