Query gi|254781224|ref|YP_003065637.1| hypothetical protein CLIBASIA_05655 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs 54 out of 56
Neff 4.0
Searched_HMMs 33803
Date Wed Jun 1 23:10:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781224.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2wpq_A Trimeric autotransport 69.6 6.7 0.0002 18.0 13.5 21 6-26 4-24 (99)
2 >2jo8_A Serine/threonine-prote 33.3 28 0.00083 14.4 6.2 36 40-75 13-48 (51)
3 >2zhj_A Annexin A4; zynogen gr 25.0 39 0.0012 13.6 4.1 27 38-64 71-97 (163)
4 >1u2m_A Histone-like protein H 24.4 40 0.0012 13.5 2.8 41 56-96 68-108 (143)
5 >3epv_A CNRX, nickel and cobal 21.4 46 0.0014 13.1 8.8 35 31-65 16-50 (109)
6 >2yy0_A C-MYC-binding protein; 20.0 50 0.0015 13.0 5.3 42 19-69 6-47 (53)
7 >3ig3_A Plxna3 protein; plexin 16.7 59 0.0018 12.5 5.1 25 48-72 22-46 (122)
8 >2qyw_A Vesicle transport thro 14.7 67 0.002 12.2 3.8 24 58-81 66-89 (102)
9 >3lay_A Zinc resistance-associ 13.2 74 0.0022 11.9 8.9 35 29-63 70-104 (175)
10 >1ses_A Seryl-tRNA synthetase; 12.6 77 0.0023 11.8 8.1 68 8-75 4-74 (83)
No 1
>>2wpq_A Trimeric autotransporter adhesin fragment; coiled coil, hydrophobic core, ION coordination, protein export, TAA, membrane protein; 1.85A {Salmonella enterica subsp} (A:)
Probab=69.63 E-value=6.7 Score=18.03 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999998
Q gi|254781224|r 6 VRQKVQKDSVEIRFTKLETAL 26 (103)
Q Consensus 6 lr~~v~~~~~e~r~~~~e~~~ 26 (103)
+..+|..+..++.-...+++.
T Consensus 4 ~~~~i~~l~~~i~~l~~~ia~ 24 (99)
T 2wpq_A 4 IEDKIEEILSKIYHIENEIAR 24 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 776599999998888889999
No 2
>>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens} (A:)
Probab=33.29 E-value=28 Score=14.41 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999
Q gi|254781224|r 40 TELKQDIANVRTELKADIADVRTELACTKSELKDAI 75 (103)
Q Consensus 40 ~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei 75 (103)
.|+..-.++|-.+|..+|..||.--+.-+.-+=++|
T Consensus 13 eeL~~rl~sLD~~ME~Eieelr~RYq~KRqPILdAi 48 (51)
T 2jo8_A 13 EDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAI 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999986678899999999999887434399997
No 3
>>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A (A:1-88,A:248-322)
Probab=25.00 E-value=39 Score=13.55 Aligned_cols=27 Identities=15% Similarity=0.205 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999
Q gi|254781224|r 38 VRTELKQDIANVRTELKADIADVRTEL 64 (103)
Q Consensus 38 LR~Elk~~i~~LR~Elk~di~~LR~El 64 (103)
|+.|+-.+.-+.-.-+-.+-..+|+|+
T Consensus 71 l~~~l~gn~~d~iLg~~~srhE~RAEl 97 (163)
T 2zhj_A 71 LKSELSSNFEQVILGMMTNKPAYFAER 97 (163)
T ss_dssp HHHHCCHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHCCHHHHHHHH
T ss_conf 987627749999999967878889999
No 4
>>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} (A:)
Probab=24.39 E-value=40 Score=13.48 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999
Q gi|254781224|r 56 DIADVRTELACTKSELKDAINSQTKWFMGIIVSVLVSTIGI 96 (103)
Q Consensus 56 di~~LR~El~~~~~~LR~ei~~~~~~l~G~~~al~~a~iGv 96 (103)
++..+..+++.....+.+++......+...+.......+..
T Consensus 68 el~~k~~elq~~~~~~~~~l~~~~~~~~~~l~~~i~~~i~~ 108 (143)
T 1u2m_A 68 DVXAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKS 108 (143)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999987899999999999
No 5
>>3epv_A CNRX, nickel and cobalt resistance protein CNRR; all alpha helix, coiled coil, periplasm, plasmid, metal binding protein; HET: MSE; 1.74A {Ralstonia metallidurans CH34} (A:)
Probab=21.45 E-value=46 Score=13.14 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999
Q gi|254781224|r 31 TKADLADVRTELKQDIANVRTELKADIADVRTELA 65 (103)
Q Consensus 31 ~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~ 65 (103)
-+..|..++.+.+.+...++.++...-..|+.-+.
T Consensus 16 Q~~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~ll~ 50 (109)
T 3epv_A 16 EREILELKEDAFAQRRREIETRLRAANGKLADAIA 50 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999989887667889999999866
No 6
>>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} (A:)
Probab=19.99 E-value=50 Score=12.95 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999988899999999999999999999999999999999999999999
Q gi|254781224|r 19 FTKLETALPYLATKADLADVRTELKQDIANVRTELKADIADVRTELACTKS 69 (103)
Q Consensus 19 ~~~~e~~~~~l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~ 69 (103)
|.|+-.++.-.++ +|+..||.|+ .|+++....|-.|.+.+.+
T Consensus 6 FlK~HLg~~gpe~-~DvEaLrlEl--------~eLkqK~e~L~eEN~eLK~ 47 (53)
T 2yy0_A 6 FLKHHLGAATPEN-PEIELLRLEL--------AEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp ----------CCC-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCC-CHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf 9998817899996-1099999999--------9999999999999999999
No 7
>>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembrane, membrane protein, signaling protein; 1.99A {Mus musculus} (A:1-48,A:188-224,A:398-434)
Probab=16.73 E-value=59 Score=12.51 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999
Q gi|254781224|r 48 NVRTELKADIADVRTELACTKSELK 72 (103)
Q Consensus 48 ~LR~Elk~di~~LR~El~~~~~~LR 72 (103)
.+|.|-|..+++|.+||.+..++|.
T Consensus 22 ~Va~eCKeaFaeLqT~m~dlt~Dl~ 46 (122)
T 3ig3_A 22 RVALECKEAFAELQTDINELTNHMD 46 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999998620454144405
No 8
>>2qyw_A Vesicle transport through interaction with T- snares 1B homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V (A:)
Probab=14.71 E-value=67 Score=12.20 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254781224|r 58 ADVRTELACTKSELKDAINSQTKW 81 (103)
Q Consensus 58 ~~LR~El~~~~~~LR~ei~~~~~~ 81 (103)
.+..-|+.+.-...|..+++-.+.
T Consensus 66 ~QMelEvr~~p~s~R~~~~~KlR~ 89 (102)
T 2qyw_A 66 AEXEEELRYAPLTFRNPXXSKLRN 89 (102)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999884987779999999999
No 9
>>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:)
Probab=13.20 E-value=74 Score=11.95 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999
Q gi|254781224|r 29 LATKADLADVRTELKQDIANVRTELKADIADVRTE 63 (103)
Q Consensus 29 l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~E 63 (103)
-+-++.+..++.+.+.+...+|.++...-.+++..
T Consensus 70 ~eQ~~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~l 104 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNAL 104 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999
No 10
>>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:25-107)
Probab=12.56 E-value=77 Score=11.83 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999888999999999999999999999999---99999999999999999999999
Q gi|254781224|r 8 QKVQKDSVEIRFTKLETALPYLATKADLADVRTELKQDIANVRTE---LKADIADVRTELACTKSELKDAI 75 (103)
Q Consensus 8 ~~v~~~~~e~r~~~~e~~~~~l~~k~di~~LR~Elk~~i~~LR~E---lk~di~~LR~El~~~~~~LR~ei 75 (103)
++|..+..+.|-...++..++-+-+.--..+.+=.+.+...|+.+ ++.++..+-.++...-.++..-+
T Consensus 4 d~i~~ld~~~r~l~~~~~~l~~~rn~~sk~I~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~~~~~~~~l 74 (83)
T 1ses_A 4 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999975325154899999999999999998867999988776653
Done!