Query gi|254781224|ref|YP_003065637.1| hypothetical protein CLIBASIA_05655 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs 54 out of 56
Neff 4.0
Searched_HMMs 13730
Date Wed Jun 1 11:52:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781224.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 95.7 0.026 1.9E-06 29.7 7.8 59 27-85 68-126 (144)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 95.4 0.0059 4.3E-07 33.5 3.5 60 23-82 75-134 (144)
3 d1wa8b1 a.25.3.1 (B:602-695) E 22.6 18 0.0013 13.3 3.6 19 57-75 50-68 (94)
4 d1u2ma_ f.48.1.1 (A:) Periplas 21.5 19 0.0014 13.1 2.8 32 55-86 67-98 (143)
5 d1vcsa1 a.47.2.1 (A:8-96) Vesi 13.1 30 0.0022 11.9 2.3 37 37-73 49-85 (89)
6 d1nzea_ a.24.18.1 (A:) Oxygen- 12.0 33 0.0024 11.7 8.7 51 26-76 36-86 (112)
7 d1slqa_ f.47.1.1 (A:) VP4 memb 8.9 43 0.0031 11.1 3.0 14 51-64 240-253 (270)
8 d1vmga_ a.204.1.2 (A:) Hypothe 8.6 44 0.0032 11.0 7.3 42 1-43 3-44 (83)
9 d2iy5a1 a.2.7.2 (A:15-84) Phen 8.4 24 0.0018 12.5 -0.9 46 28-73 11-56 (70)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 8.0 46 0.0034 10.8 5.5 40 32-71 60-102 (107)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=95.73 E-value=0.026 Score=29.72 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999999999999999999999999999999999999999999999999
Q gi|254781224|r 27 PYLATKADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTKWFMGI 85 (103)
Q Consensus 27 ~~l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei~~~~~~l~G~ 85 (103)
++-.+..++..||..+..++..+|..+..-+.++|..+...+.++|+.+...+..+..-
T Consensus 68 ~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~ 126 (144)
T d1gs9a_ 68 TRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKR 126 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99888865999999998789999999998899999999899999999878999999999
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=95.43 E-value=0.0059 Score=33.52 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999888999999999999999999999999999999999999999999999999999999
Q gi|254781224|r 23 ETALPYLATKADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTKWF 82 (103)
Q Consensus 23 e~~~~~l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei~~~~~~l 82 (103)
++..++..+..++.++|..+..-+..+|..+..++..+|..+...+.+|+..+...+--|
T Consensus 75 ~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel 134 (144)
T d1gs9a_ 75 ELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDL 134 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 599999999878999999999889999999989999999987899999999998899999
No 3
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.56 E-value=18 Score=13.27 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999
Q gi|254781224|r 57 IADVRTELACTKSELKDAI 75 (103)
Q Consensus 57 i~~LR~El~~~~~~LR~ei 75 (103)
+.++..+-......|.+.+
T Consensus 50 f~~~~~~W~~~~~~l~~~L 68 (94)
T d1wa8b1 50 YQGVQQKWDATATELNNAL 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 4
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia coli [TaxId: 562]}
Probab=21.50 E-value=19 Score=13.14 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999
Q gi|254781224|r 55 ADIADVRTELACTKSELKDAINSQTKWFMGII 86 (103)
Q Consensus 55 ~di~~LR~El~~~~~~LR~ei~~~~~~l~G~~ 86 (103)
.++..+..+++........++.....-+..-+
T Consensus 67 ~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~i 98 (143)
T d1u2ma_ 67 KDVMAQRQTFAQKAQAFEQDRARRSNEERGKL 98 (143)
T ss_dssp --------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999
No 5
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.06 E-value=30 Score=11.92 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999
Q gi|254781224|r 37 DVRTELKQDIANVRTELKADIADVRTELACTKSELKD 73 (103)
Q Consensus 37 ~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ 73 (103)
++.-|++.=-.+.|+.+.+-+-..|+|++....+++.
T Consensus 49 qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~ 85 (89)
T d1vcsa1 49 QMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR 85 (89)
T ss_dssp HHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999987498777999999999999999999999986
No 6
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=12.00 E-value=33 Score=11.73 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888999999999999999999999999999999999999999999999999
Q gi|254781224|r 26 LPYLATKADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAIN 76 (103)
Q Consensus 26 ~~~l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei~ 76 (103)
..+-.++.-++.||.+|..=+.++-.+-+.+...|-.++.+++.+|....+
T Consensus 36 ~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~LD~Aar 86 (112)
T d1nzea_ 36 SLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAK 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987878999999998717875469999999999999999999997
No 7
>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus rotavirus [TaxId: 10969]}
Probab=8.86 E-value=43 Score=11.06 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254781224|r 51 TELKADIADVRTEL 64 (103)
Q Consensus 51 ~Elk~di~~LR~El 64 (103)
+++.-.+.+||-|.
T Consensus 240 qDLErqi~dLr~ef 253 (270)
T d1slqa_ 240 QDLERQLGELREEF 253 (270)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 87999999999999
No 8
>d1vmga_ a.204.1.2 (A:) Hypothetical protein SSo12199 (SSo3215) {Sulfolobus solfataricus [TaxId: 2287]}
Probab=8.63 E-value=44 Score=11.00 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9566799999999999999999999888999999999999999
Q gi|254781224|r 1 MEKTAVRQKVQKDSVEIRFTKLETALPYLATKADLADVRTELK 43 (103)
Q Consensus 1 ~~~~~lr~~v~~~~~e~r~~~~e~~~~~l~~k~di~~LR~Elk 43 (103)
|.-..+.++|++...+ |..........+.+-.|+++|-..++
T Consensus 3 M~l~elQ~~v~~~~~~-~d~~~~~~~~~~~l~eE~gEl~~a~~ 44 (83)
T d1vmga_ 3 LELKELQSKMKEMYFE-KDSQRGIYATFTWLVEEVGELAEALL 44 (83)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8599999999999986-51533899999999999999999998
No 9
>d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS) {Thermus thermophilus [TaxId: 274]}
Probab=8.36 E-value=24 Score=12.47 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999999999999999999999999999999999
Q gi|254781224|r 28 YLATKADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKD 73 (103)
Q Consensus 28 ~l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ 73 (103)
++.-|+.|+.+-..|+.=-..=|.++...++.+++++...+..-+.
T Consensus 11 ~lGKkG~i~~~~k~l~~l~~eek~~~G~~lN~~K~~i~~~~~~~~~ 56 (70)
T d2iy5a1 11 YLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREK 56 (70)
T ss_dssp HHHHHHHTTSTTSCTTTGGGCCTTHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9276059999998770799898899639999999999999999999
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.00 E-value=46 Score=10.84 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999---99999999999999999
Q gi|254781224|r 32 KADLADVRTELKQDIANVRTELK---ADIADVRTELACTKSEL 71 (103)
Q Consensus 32 k~di~~LR~Elk~~i~~LR~Elk---~di~~LR~El~~~~~~L 71 (103)
+.+..++..+++..+..+..+++ ..+..++.++......+
T Consensus 60 ~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 60 RVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0739999999999999999999999999999999999999999
Done!