RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781224|ref|YP_003065637.1| hypothetical protein
CLIBASIA_05655 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 11/37 (29%)

Query: 2  EKTAVRQKVQKDSVEIRFTKL---ETALPYLATKADL 35
          EK A++ K+Q  S+     KL   ++A P LA KA +
Sbjct: 18 EKQALK-KLQA-SL-----KLYADDSA-PALAIKATM 46



 Score = 28.4 bits (62), Expect = 0.35
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 5/32 (15%)

Query: 43 KQDIANVRTELK--ADIADVRTELACTKSELK 72
          KQ +  ++  LK  AD  D    LA  K+ ++
Sbjct: 19 KQALKKLQASLKLYAD--DSAPALA-IKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.9 bits (80), Expect = 0.005
 Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 32/93 (34%)

Query: 12  KDSVEIRFTKLETALP--------YLATKADLADVRTELKQDIANVRTELKADIADVRTE 63
           K     RF      LP         L            + +D+        A   D++  
Sbjct: 413 KLKFSNRF------LPVASPFHSHLLV------PASDLINKDLVKNNVSFNAK--DIQIP 458

Query: 64  LACTK--SELKDAINSQTKWFMGIIVSVLVSTI 94
           +  T   S+L+    S        I   +V  I
Sbjct: 459 VYDTFDGSDLRVLSGS--------ISERIVDCI 483



 Score = 30.3 bits (68), Expect = 0.10
 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 10/35 (28%)

Query: 64  LACTKSELKDAI-----NSQTKWFMGIIVSVLVST 93
           L  T  EL+  +     +SQ     G++ +V ++ 
Sbjct: 256 LGFTPGELRSYLKGATGHSQ-----GLVTAVAIAE 285


>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism,
          structural genomics, riken structural
          genomics/proteomics initiative, RSGI, isomerase; NMR
          {Mus musculus} SCOP: d.129.2.1
          Length = 112

 Score = 27.6 bits (61), Expect = 0.70
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 31 TKADLADVRTELKQDIANVRTELKADIADVRTELACTKSE-LKDAINSQTKWF 82
          +      +  +L      V+   +  I+    E        L++AIN   K +
Sbjct: 2  SSGSSGAIYVDLPNRQLKVKVADRRVISTTDAERQAVTPPGLQEAINDLVKKY 54


>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E,
           botulism, domain organization, endopeptidase,
           translocation, hydrolase; 2.65A {Clostridium botulinum}
          Length = 1252

 Score = 27.1 bits (60), Expect = 0.96
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 41  ELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTK 80
           +L++   NV+T L   I    + L  ++ EL   +     
Sbjct: 781 KLREYDENVKTYLLNYIIQHGSILGESQQELNSMVTDTLN 820


>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma
           protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1
           PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
          Length = 191

 Score = 27.2 bits (60), Expect = 1.0
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 37  DVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTK 80
           + R  L +++   +  L AD+ DV   L   + E++  +   T+
Sbjct: 88  ETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTE 131



 Score = 24.5 bits (53), Expect = 5.7
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 32  KADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTK 80
            AD+ DV   L Q    V+  L     ++R  LA    +L+  +     
Sbjct: 105 GADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDAD 153



 Score = 24.5 bits (53), Expect = 6.5
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 2   EKTAVRQKVQKDSVEIRFTKLETALPYLATKAD--LADVRTELKQDIANVRTELKADIAD 59
           E  A + ++  D  ++   +L      +         ++R  L   +  +R  L  D  D
Sbjct: 96  ELQAAQARLGADMEDVC-GRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADD 154

Query: 60  VRTELACTKSELKDAINSQ 78
           ++  LA  ++  ++     
Sbjct: 155 LQKRLAVYQAGAREGAERG 173


>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
           FAB complex, membrane protein; 2.51A {Escherichia coli}
           SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
           2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
           2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 2hlf_A ...
          Length = 465

 Score = 24.7 bits (53), Expect = 5.1
 Identities = 5/23 (21%), Positives = 7/23 (30%)

Query: 81  WFMGIIVSVLVSTIGILLKLSSH 103
            FM  +V  LV    +       
Sbjct: 36  LFMAAVVGTLVGLAAVAFDKGVA 58


>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small
           phosphatase 1; protein-peptide complex, HAD superfamily,
           hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A*
           1t9z_A* 1ta0_A* 2q5e_A
          Length = 181

 Score = 24.6 bits (53), Expect = 5.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 20  TKLETALPYLATKADLADVRTELKQ 44
           T+L   LP+    + + DV + L+Q
Sbjct: 157 TELHDLLPFFEQLSRVDDVYSVLRQ 181


>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody
           complex, toxin/immune system complex; 2.61A {Clostridium
           botulinum} PDB: 2nz9_A 3bta_A
          Length = 1295

 Score = 24.1 bits (52), Expect = 9.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 41  ELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTK 80
            L+   A+++  L   I D R  L      LKD +N+   
Sbjct: 806 RLEDFDASLKDALLKYIYDNRGTLIGQVDRLKDKVNNTLS 845


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.129    0.338 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 701,164
Number of extensions: 25236
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 25
Length of query: 103
Length of database: 5,693,230
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,044,638
Effective search space: 141562330
Effective search space used: 141562330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)