RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781224|ref|YP_003065637.1| hypothetical protein
CLIBASIA_05655 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
           [TaxId: 9606]}
          Length = 144

 Score = 30.2 bits (68), Expect = 0.052
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 3   KTAVRQKVQKDSVEIRFTKLETALPYLATK--ADLADVRTELKQDIANVRTELKADIADV 60
           K+ + +++   + E R  +L   L     +  AD+ DVR  L Q    V+  L     ++
Sbjct: 54  KSELEEQLTPVAEETR-ARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEEL 112

Query: 61  RTELACTKSELKDAINSQT 79
           R  LA    +L+  +    
Sbjct: 113 RVRLASHLRKLRKRLLRDA 131


>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II
           polypeptide A small phosphatase 1, NRAMP1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 181

 Score = 24.6 bits (53), Expect = 2.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 20  TKLETALPYLATKADLADVRTELKQ 44
           T+L   LP+    + + DV + L+Q
Sbjct: 157 TELHDLLPFFEQLSRVDDVYSVLRQ 181


>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score = 24.4 bits (52), Expect = 2.9
 Identities = 5/23 (21%), Positives = 7/23 (30%)

Query: 81  WFMGIIVSVLVSTIGILLKLSSH 103
            FM  +V  LV    +       
Sbjct: 20  LFMAAVVGTLVGLAAVAFDKGVA 42


>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3
          {Escherichia coli [TaxId: 562]}
          Length = 80

 Score = 23.9 bits (52), Expect = 3.7
 Identities = 6/42 (14%), Positives = 17/42 (40%)

Query: 3  KTAVRQKVQKDSVEIRFTKLETALPYLATKADLADVRTELKQ 44
          KT + +  +    + R T  +  +     +++ A +    K+
Sbjct: 31 KTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKE 72


>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 112

 Score = 23.8 bits (51), Expect = 3.8
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 31 TKADLADVRTELKQDIANVRTELKADIADVRTELACTKSE-LKDAINSQTKWF 82
          +      +  +L      V+   +  I+    E        L++AIN   K +
Sbjct: 2  SSGSSGAIYVDLPNRQLKVKVADRRVISTTDAERQAVTPPGLQEAINDLVKKY 54


>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde
           dehydrogenase {Vibrio cholerae [TaxId: 666]}
          Length = 147

 Score = 23.9 bits (51), Expect = 4.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 68  KSELKDAINSQTKWFMGIIVSVLVSTIGILL 98
             ++   I+  TK F+G     L  T+ I+L
Sbjct: 115 LKQILHGIHHGTKTFVGGAAEPLRRTLRIIL 145


>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 23.5 bits (51), Expect = 4.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 8  QKVQKDSVEIRF 19
           KVQKD +E+RF
Sbjct: 25 DKVQKDDIEVRF 36


>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB),
          dimerization domain {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 107

 Score = 23.1 bits (50), Expect = 5.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 8  QKVQKDSVEIRF 19
           KVQK+ +E+ F
Sbjct: 27 DKVQKEDIEVYF 38


>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal
          domain {Thermotoga maritima [TaxId: 2336]}
          Length = 63

 Score = 23.1 bits (50), Expect = 6.5
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 70 ELKDAINSQTKWFMGIIVSVLVS 92
          E     N++T    G+I+ V+++
Sbjct: 30 EFCKRFNAETADKAGMILPVVIT 52


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 22.8 bits (48), Expect = 8.3
 Identities = 9/85 (10%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 6   VRQKVQKDSVEIRFTKLETALPYLATKADLADVRTELKQDIANVRTELKADIADVRTELA 65
           +     +  V +R   ++  L  +  +++   +  E+   +      ++ +I      LA
Sbjct: 366 INALKTERDVSVRQRAVDL-LYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILA 424

Query: 66  CTKSELKDAINSQTKWFMGIIVSVL 90
                  +       W++  I++++
Sbjct: 425 -------EKYAVDYTWYVDTILNLI 442


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.338 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,341
Number of extensions: 10987
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 15
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)