HHsearch alignment for GI: 254781225 and conserved domain: COG1222

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=95.65  E-value=0.15  Score=28.06  Aligned_cols=208  Identities=16%  Similarity=0.171  Sum_probs=114.3

Q ss_pred             CCCCCCCCCHHHCCCCCCEEEECCC---EEECCCC----CCCCC------CHHHHCCEECCCCCCCCCCHHHHHH----H
Q ss_conf             1000012320220579717660793---7974388----85589------8655010013788887579478999----9
Q gi|254781225|r  410 EAGSIFSITSDLLDSSSRFLGEQDG---ILDLETG----QKVKP------TKELYITKSTGTPFVEGEPSQEFLD----L  472 (789)
Q Consensus       410 ~~~~~~~~~~~~ld~~~~ll~~~NG---v~dl~t~----~~~~~------~~~~~~t~~~~~~y~~~a~~p~~~~----~  472 (789)
T Consensus        70 ~~pl~vg~v~e~id~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~Pdvt  149 (406)
T COG1222          70 EPPLIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVT  149 (406)
T ss_pred             CCCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCHHHEEEECCCCCCC
T ss_conf             89956899999817861899707997188734687698786998889985776145661787557620200112589878


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf             988879999999999999999759-------8743379999707886257899999997233000344267642012455
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE  545 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~  545 (789)
T Consensus       150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV-qKYiGE  228 (406)
T COG1222         150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV-QKYIGE  228 (406)
T ss_pred             HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHH-HHHHCC
T ss_conf             6533588999999999840336688899974999997127668999758899999872058669994219999-998341


Q ss_pred             CC---CCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECC-----CCCCEEEECCEEEEEECCCCCCCC
Q ss_conf             55---6898899738980999934677760131002454159858732104-----786068714528999738863426
Q gi|254781225|r  546 AG---KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY-----GNTYSESPASFTPFIVPNKHLFVR  617 (789)
Q Consensus       546 ~~---~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~-----~~~~~~~~p~~~~~~~~N~~P~~~  617 (789)
T Consensus       229 GaRlVRelF~lArekaPsIIFiDEIDA---Ig~kR~d~~t~gDrEVQRTmleLL~qlDGF-D~~~nvKVI~ATNR---~D  301 (406)
T COG1222         229 GARLVRELFELAREKAPSIIFIDEIDA---IGAKRFDSGTSGDREVQRTMLELLNQLDGF-DPRGNVKVIMATNR---PD  301 (406)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEECHHH---HHCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEEEECCC---CC
T ss_conf             169999999987414984999831122---311113688885099999999999860588-97887689985588---55


Q ss_pred             CCCCCEEE
Q ss_conf             79841664
Q gi|254781225|r  618 NPDDAWWR  625 (789)
Q Consensus       618 ~~d~~~~r  625 (789)
T Consensus       302 ~LDPALLR  309 (406)
T COG1222         302 ILDPALLR  309 (406)
T ss_pred             CCCHHHCC
T ss_conf             55766508