HHsearch alignment for GI: 254781225 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=95.65 E-value=0.15 Score=28.06 Aligned_cols=208 Identities=16% Similarity=0.171 Sum_probs=114.3
Q ss_pred CCCCCCCCCHHHCCCCCCEEEECCC---EEECCCC----CCCCC------CHHHHCCEECCCCCCCCCCHHHHHH----H
Q ss_conf 1000012320220579717660793---7974388----85589------8655010013788887579478999----9
Q gi|254781225|r 410 EAGSIFSITSDLLDSSSRFLGEQDG---ILDLETG----QKVKP------TKELYITKSTGTPFVEGEPSQEFLD----L 472 (789)
Q Consensus 410 ~~~~~~~~~~~~ld~~~~ll~~~NG---v~dl~t~----~~~~~------~~~~~~t~~~~~~y~~~a~~p~~~~----~ 472 (789)
T Consensus 70 ~~pl~vg~v~e~id~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~Pdvt 149 (406)
T COG1222 70 EPPLIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVT 149 (406)
T ss_pred CCCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCHHHEEEECCCCCCC
T ss_conf 89956899999817861899707997188734687698786998889985776145661787557620200112589878
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 988879999999999999999759-------8743379999707886257899999997233000344267642012455
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~ 545 (789)
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV-qKYiGE 228 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV-QKYIGE 228 (406)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHH-HHHHCC
T ss_conf 6533588999999999840336688899974999997127668999758899999872058669994219999-998341
Q ss_pred CC---CCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECC-----CCCCEEEECCEEEEEECCCCCCCC
Q ss_conf 55---6898899738980999934677760131002454159858732104-----786068714528999738863426
Q gi|254781225|r 546 AG---KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY-----GNTYSESPASFTPFIVPNKHLFVR 617 (789)
Q Consensus 546 ~~---~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~-----~~~~~~~~p~~~~~~~~N~~P~~~ 617 (789)
T Consensus 229 GaRlVRelF~lArekaPsIIFiDEIDA---Ig~kR~d~~t~gDrEVQRTmleLL~qlDGF-D~~~nvKVI~ATNR---~D 301 (406)
T COG1222 229 GARLVRELFELAREKAPSIIFIDEIDA---IGAKRFDSGTSGDREVQRTMLELLNQLDGF-DPRGNVKVIMATNR---PD 301 (406)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECHHH---HHCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEEEECCC---CC
T ss_conf 169999999987414984999831122---311113688885099999999999860588-97887689985588---55
Q ss_pred CCCCCEEE
Q ss_conf 79841664
Q gi|254781225|r 618 NPDDAWWR 625 (789)
Q Consensus 618 ~~d~~~~r 625 (789)
T Consensus 302 ~LDPALLR 309 (406)
T COG1222 302 ILDPALLR 309 (406)
T ss_pred CCCHHHCC
T ss_conf 55766508