HHsearch alignment for GI: 254781225 and conserved domain: COG3378
>COG3378 Phage associated DNA primase [General function prediction only].
Probab=100.00 E-value=0 Score=532.46 Aligned_cols=347 Identities=25% Similarity=0.382 Sum_probs=309.3
Q ss_pred CCCCHHHCCCCCCEEEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCC----HHHHHHHHHHHC-CCHHHHHHHHHH
Q ss_conf 123202205797176607937974388855898655010013788887579----478999998887-999999999999
Q gi|254781225|r 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP----SQEFLDLVSGYF-ESEEVMDYFTRC 489 (789)
Q Consensus 415 ~~~~~~~ld~~~~ll~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~----~p~~~~~l~~~~-~d~e~~~~l~~~ 489 (789)
T Consensus 139 ~~~~~~~~~~~p~li~~~NGv~dl~tgql~ph~~~~~~t~~~~~~y~~~~~~~~~~p~~~~~L~~~~~~d~el~~ll~~i 218 (517)
T COG3378 139 KAATPKQQDPDPHLINFANGVLDLRTGQLEPHDPEDRFTRIIPVDYTDPAADPSHCPKWREWLDRVAGGDPELRNLLQRI 218 (517)
T ss_pred CCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 13460003699775501682377330233647821204674234446875555568509999987615788899999999
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCC
Q ss_conf 99997598743379999707886257899999997233000344267642012455556898899738980999934677
Q gi|254781225|r 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 (789)
Q Consensus 490 ~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~ 569 (789)
T Consensus 219 ~g~~l~g~~~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~-----~~~~~~~~A~Lvg~~~v~~~E~~k 293 (517)
T COG3378 219 IGASLTGRVSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEA-----DDRHPFGLAALVGKRLVTVSETEK 293 (517)
T ss_pred HHHEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCCHHHHHH-----HCCCCCHHHHHHCCEEEEECCCCC
T ss_conf 766006753400479997689987389999999984542110362887753-----204863388761755787047653
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCC--CCCHHHHH
Q ss_conf 7601310024541598587321047860687145289997388634267984166468999658878887--87833422
Q gi|254781225|r 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKL 647 (789)
Q Consensus 570 ~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~--d~~~~~~~ 647 (789)
T Consensus 294 g~l~~~~~lK~ltgGD~i~a~~K~kd~~-~f~p~a~~i~~~N~~P~~~~~d~ai~rR~~ivpF~~~f~~~~~d~~l~~kl 372 (517)
T COG3378 294 GRLDDEGKLKALTGGDVISAERKRKDFF-SFTPNAKLIQATNHPPRIRGDDEAIWRRLLIVPFEKQFPPAERDDKLDEKL 372 (517)
T ss_pred CCCCCCCCEEEECCCCEEEEHHCCCCCE-EECCCEEEEEECCCCCCCCCCCHHHHHEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 3003556636642587032011057844-751451788732889721364154232257875566678844315576888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCEECHH------HHHHHHHHH
Q ss_conf 01204479999999999999878898878899999999998426388887543262688411179------999999999
Q gi|254781225|r 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH------SLAKSYSEY 721 (789)
Q Consensus 648 ~~~e~~~i~~w~l~g~~~~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~e~ce~~~~~~~~~~------~l~~~y~~~ 721 (789)
T Consensus 373 -~~E~~~IL~~~v~g~~~~~~~g~--~~pq~~~~~~ee~k~~~D~v~~F~~d~~~~~~~~~~~~~~~~~~~~ly~~y~~w 449 (517)
T COG3378 373 -AAERPGILNWLVAGFLDLQREGL--DQPQAVLDALEEYKRENDPVFQFCDDECVLGETDGTPTAFDNIVLELYEAYQEW 449 (517)
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf -87438899999999888876168--955667999998887322799999887431544331114135667899999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEECC
Q ss_conf 9850466755545256899998635423331001025676520899798656
Q gi|254781225|r 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 (789)
Q Consensus 722 ~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~~Gi~Lk~ 773 (789)
T Consensus 450 ~e~~G~--~~~~s~~~F~~~l~~~~v~~~r~~~~~-~~t~g~~~~~~L~~~~ 498 (517)
T COG3378 450 CEANGY--VVELSKTRFGKELPTKGVPKGRKRHQG-ETTAGGRGGVDLDEQP 498 (517)
T ss_pred HHHCCC--CCCCHHHHHHCCCCCCCCCCCCEEEEC-CCCCCCCCCCCCCCCC
T ss_conf 975697--112226555223552122034123421-3578753434342235