HHsearch alignment for GI: 254781225 and conserved domain: COG3378

>COG3378 Phage associated DNA primase [General function prediction only].
Probab=100.00  E-value=0  Score=532.46  Aligned_cols=347  Identities=25%  Similarity=0.382  Sum_probs=309.3

Q ss_pred             CCCCHHHCCCCCCEEEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCC----HHHHHHHHHHHC-CCHHHHHHHHHH
Q ss_conf             123202205797176607937974388855898655010013788887579----478999998887-999999999999
Q gi|254781225|r  415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP----SQEFLDLVSGYF-ESEEVMDYFTRC  489 (789)
Q Consensus       415 ~~~~~~~ld~~~~ll~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~----~p~~~~~l~~~~-~d~e~~~~l~~~  489 (789)
T Consensus       139 ~~~~~~~~~~~p~li~~~NGv~dl~tgql~ph~~~~~~t~~~~~~y~~~~~~~~~~p~~~~~L~~~~~~d~el~~ll~~i  218 (517)
T COG3378         139 KAATPKQQDPDPHLINFANGVLDLRTGQLEPHDPEDRFTRIIPVDYTDPAADPSHCPKWREWLDRVAGGDPELRNLLQRI  218 (517)
T ss_pred             CCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             13460003699775501682377330233647821204674234446875555568509999987615788899999999


Q ss_pred             HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             99997598743379999707886257899999997233000344267642012455556898899738980999934677
Q gi|254781225|r  490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       490 ~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~  569 (789)
T Consensus       219 ~g~~l~g~~~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~-----~~~~~~~~A~Lvg~~~v~~~E~~k  293 (517)
T COG3378         219 IGASLTGRVSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEA-----DDRHPFGLAALVGKRLVTVSETEK  293 (517)
T ss_pred             HHHEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCCHHHHHH-----HCCCCCHHHHHHCCEEEEECCCCC
T ss_conf             766006753400479997689987389999999984542110362887753-----204863388761755787047653


Q ss_pred             CCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCC--CCCHHHHH
Q ss_conf             7601310024541598587321047860687145289997388634267984166468999658878887--87833422
Q gi|254781225|r  570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKL  647 (789)
Q Consensus       570 ~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~--d~~~~~~~  647 (789)
T Consensus       294 g~l~~~~~lK~ltgGD~i~a~~K~kd~~-~f~p~a~~i~~~N~~P~~~~~d~ai~rR~~ivpF~~~f~~~~~d~~l~~kl  372 (517)
T COG3378         294 GRLDDEGKLKALTGGDVISAERKRKDFF-SFTPNAKLIQATNHPPRIRGDDEAIWRRLLIVPFEKQFPPAERDDKLDEKL  372 (517)
T ss_pred             CCCCCCCCEEEECCCCEEEEHHCCCCCE-EECCCEEEEEECCCCCCCCCCCHHHHHEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             3003556636642587032011057844-751451788732889721364154232257875566678844315576888


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCEECHH------HHHHHHHHH
Q ss_conf             01204479999999999999878898878899999999998426388887543262688411179------999999999
Q gi|254781225|r  648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH------SLAKSYSEY  721 (789)
Q Consensus       648 ~~~e~~~i~~w~l~g~~~~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~e~ce~~~~~~~~~~------~l~~~y~~~  721 (789)
T Consensus       373 -~~E~~~IL~~~v~g~~~~~~~g~--~~pq~~~~~~ee~k~~~D~v~~F~~d~~~~~~~~~~~~~~~~~~~~ly~~y~~w  449 (517)
T COG3378         373 -AAERPGILNWLVAGFLDLQREGL--DQPQAVLDALEEYKRENDPVFQFCDDECVLGETDGTPTAFDNIVLELYEAYQEW  449 (517)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             -87438899999999888876168--955667999998887322799999887431544331114135667899999999


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEECC
Q ss_conf             9850466755545256899998635423331001025676520899798656
Q gi|254781225|r  722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP  773 (789)
Q Consensus       722 ~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~~Gi~Lk~  773 (789)
T Consensus       450 ~e~~G~--~~~~s~~~F~~~l~~~~v~~~r~~~~~-~~t~g~~~~~~L~~~~  498 (517)
T COG3378         450 CEANGY--VVELSKTRFGKELPTKGVPKGRKRHQG-ETTAGGRGGVDLDEQP  498 (517)
T ss_pred             HHHCCC--CCCCHHHHHHCCCCCCCCCCCCEEEEC-CCCCCCCCCCCCCCCC
T ss_conf             975697--112226555223552122034123421-3578753434342235