HHsearch alignment for GI: 254781225 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=96.12 E-value=0.028 Score=32.87 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=77.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHH------HHHCCCCC
Q ss_conf 998887999999999999999975987433799997078862578999999972330003442676------42012455
Q gi|254781225|r 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD------IMQNRPPE 545 (789)
Q Consensus 472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~------~~~~~~~~ 545 (789)
T Consensus 12 ~~~divg~~~~v~~l~~Wl~~w~~g~~-~~k~lLL~GPpGvGKTT~a~~lAk~~g~~-viElNASD~R~~~~I~~~i~~~ 89 (403)
T PRK04195 12 SLSDVVGNEKAKKQLREWIESWLKGKP-PKKALLLYGPPGVGKTSLAHALANDYGWE-VIELNASDQRTKDVIERVAGEA 89 (403)
T ss_pred CHHHHHCCHHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCHHHHHHHHHHH
T ss_conf 899985889999999999999873996-57469988939987999999999984998-5997710114789999999987
Q ss_pred CCCCCHHHHHHC--CCEEEEEECCCCCCC-CCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCC
Q ss_conf 556898899738--980999934677760-13100245415985873210478606871452899973886342679841
Q gi|254781225|r 546 AGKANPSLIRLM--GSRIVIISETNENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 (789)
Q Consensus 546 ~~~~~~~la~l~--g~r~~~~~E~~~~~~-~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~ 622 (789)
T Consensus 90 ~~--~---~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~--------~~ik~s------~~PiIli~Nd~~~~--~~~~ 148 (403)
T PRK04195 90 ST--S---GSLFGAKRKLILLDEVDGIHGNADRGGVRAIL--------EIIKKA------KNPIILTANDPYDP--SLRP 148 (403)
T ss_pred HH--C---CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH--------HHHHCC------CCEEEEEECCCCCC--CHHH
T ss_conf 60--6---88778873499963434457244479999999--------998548------87089982684556--7177
Q ss_pred EEEEEEEEECCCCC
Q ss_conf 66468999658878
Q gi|254781225|r 623 WWRRYIVIPFDKPI 636 (789)
Q Consensus 623 ~~rR~~iipF~~~~ 636 (789)
T Consensus 149 lrs~c~~i~F~~~~ 162 (403)
T PRK04195 149 LRNACLMIEFKRLS 162 (403)
T ss_pred HHHHHHHCCCCCCC
T ss_conf 99766122179949