HHsearch alignment for GI: 254781225 and conserved domain: PRK04195

>PRK04195 replication factor C large subunit; Provisional.
Probab=96.12  E-value=0.028  Score=32.87  Aligned_cols=142  Identities=15%  Similarity=0.200  Sum_probs=77.6

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHH------HHHCCCCC
Q ss_conf             998887999999999999999975987433799997078862578999999972330003442676------42012455
Q gi|254781225|r  472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD------IMQNRPPE  545 (789)
Q Consensus       472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~------~~~~~~~~  545 (789)
T Consensus        12 ~~~divg~~~~v~~l~~Wl~~w~~g~~-~~k~lLL~GPpGvGKTT~a~~lAk~~g~~-viElNASD~R~~~~I~~~i~~~   89 (403)
T PRK04195         12 SLSDVVGNEKAKKQLREWIESWLKGKP-PKKALLLYGPPGVGKTSLAHALANDYGWE-VIELNASDQRTKDVIERVAGEA   89 (403)
T ss_pred             CHHHHHCCHHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCHHHHHHHHHHH
T ss_conf             899985889999999999999873996-57469988939987999999999984998-5997710114789999999987


Q ss_pred             CCCCCHHHHHHC--CCEEEEEECCCCCCC-CCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCC
Q ss_conf             556898899738--980999934677760-13100245415985873210478606871452899973886342679841
Q gi|254781225|r  546 AGKANPSLIRLM--GSRIVIISETNENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA  622 (789)
Q Consensus       546 ~~~~~~~la~l~--g~r~~~~~E~~~~~~-~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~  622 (789)
T Consensus        90 ~~--~---~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~--------~~ik~s------~~PiIli~Nd~~~~--~~~~  148 (403)
T PRK04195         90 ST--S---GSLFGAKRKLILLDEVDGIHGNADRGGVRAIL--------EIIKKA------KNPIILTANDPYDP--SLRP  148 (403)
T ss_pred             HH--C---CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH--------HHHHCC------CCEEEEEECCCCCC--CHHH
T ss_conf             60--6---88778873499963434457244479999999--------998548------87089982684556--7177


Q ss_pred             EEEEEEEEECCCCC
Q ss_conf             66468999658878
Q gi|254781225|r  623 WWRRYIVIPFDKPI  636 (789)
Q Consensus       623 ~~rR~~iipF~~~~  636 (789)
T Consensus       149 lrs~c~~i~F~~~~  162 (403)
T PRK04195        149 LRNACLMIEFKRLS  162 (403)
T ss_pred             HHHHHHHCCCCCCC
T ss_conf             99766122179949