HHsearch alignment for GI: 254781225 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=91.93 E-value=0.41 Score=25.13 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=32.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 999888799999999999999997598743379999707886257899999997233
Q gi|254781225|r 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 471 ~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
T Consensus 140 ~~l~~~~~~~~~~~fL~~aV~--------~r~NIlIsGgTGSGKTTllnALl~~IP~ 188 (343)
T PRK13851 140 EAILRHYDNGDLEAFLHACVV--------GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (343)
T ss_pred HHHHHCCCCHHHHHHHHHHHH--------CCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 787750243779999999997--------6988999888986199999999962896