HHsearch alignment for GI: 254781225 and conserved domain: TIGR01242
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=94.08 E-value=0.062 Score=30.57 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=124.7
Q ss_pred CCCCCCCCCHHHCCCCCCEEEECCC---EEECC----CCCCCCCCH------HHHCCEECCCCCCCCCCHHHHHH----H
Q ss_conf 1000012320220579717660793---79743----888558986------55010013788887579478999----9
Q gi|254781225|r 410 EAGSIFSITSDLLDSSSRFLGEQDG---ILDLE----TGQKVKPTK------ELYITKSTGTPFVEGEPSQEFLD----L 472 (789)
Q Consensus 410 ~~~~~~~~~~~~ld~~~~ll~~~NG---v~dl~----t~~~~~~~~------~~~~t~~~~~~y~~~a~~p~~~~----~ 472 (789)
T Consensus 41 ~PP~~~~~V~~~~~~~rvvVks~tGP~fvv~~~~~i~~~~L~PG~~VaLn~~t~~iV~vLP~~kDp~v~~~EV~E~P~V~ 120 (364)
T TIGR01242 41 SPPLIVGTVVEVLDDDRVVVKSSTGPKFVVNVSAFIDRKELKPGARVALNQQTLAIVDVLPTSKDPLVKGMEVEERPNVS 120 (364)
T ss_pred CCCEEEEEEEEEECCCEEEEECCCCCEEEEEHHCCCCHHHCCCCCEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCEE
T ss_conf 89827887543214863799637985000000012362026886567423784289984678878657877762178233
Q ss_pred HHHHCCCHHHHHHHHHHHHHHH--------CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 9888799999999999999997--------59874337999970788625789999999723300034426764201245
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMAL--------LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l--------~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~ 544 (789)
T Consensus 121 y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vG-I~PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgSElV~KyIGE 199 (364)
T TIGR01242 121 YEDIGGLEKQIREIREAVELPLKKPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGE 199 (364)
T ss_pred EECCCCHHHHHHHHHHHHHCCCCCCHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCC
T ss_conf 40267878999999888734688831677628-89898657007579768899998631455126886044444444133
Q ss_pred CC--CCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCC-----CCCEEEECCEEEEEECCCCCCCC
Q ss_conf 55--568988997389809999346777601310024541598587321047-----86068714528999738863426
Q gi|254781225|r 545 EA--GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-----NTYSESPASFTPFIVPNKHLFVR 617 (789)
Q Consensus 545 ~~--~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~-----~~~~~~~p~~~~~~~~N~~P~~~ 617 (789)
T Consensus 200 GArLV~~~F~LAkEKaPsIiFIDEiD---AiaakR~~~~TsGdREV~RTlmQLLAElDGF-d~rg~VkviaATNR~DilD 275 (364)
T TIGR01242 200 GARLVREVFELAKEKAPSIIFIDEID---AIAAKRVDSSTSGDREVQRTLMQLLAELDGF-DPRGNVKVIAATNRPDILD 275 (364)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECHH---HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCHHCC
T ss_conf 16899999998530698168610133---3543211467787315788999999752488-8767616887207620204
Q ss_pred CC--CCCEEEEEEEEECCCC
Q ss_conf 79--8416646899965887
Q gi|254781225|r 618 NP--DDAWWRRYIVIPFDKP 635 (789)
Q Consensus 618 ~~--d~~~~rR~~iipF~~~ 635 (789)
T Consensus 276 PA~LRPGRFDR~IEVPlP~~ 295 (364)
T TIGR01242 276 PAILRPGRFDRIIEVPLPDF 295 (364)
T ss_pred CCCCCCCCCCCEEECCCCCC
T ss_conf 32148886132573169783