HHsearch alignment for GI: 254781225 and conserved domain: TIGR01613

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain; InterPro: IPR006500 These sequences form a clade within a larger family of proteins from viruses of bacteria and animals. Members of the family that contain this domain are found in phage and the plasmids of bacteria and archaea. .
Probab=100.00  E-value=0  Score=407.15  Aligned_cols=302  Identities=25%  Similarity=0.425  Sum_probs=273.1

Q ss_pred             CEEEECCCEEECCCCCCCCCCHHHHCC-EECCCCCCCCCCHHHHHH-----HHHHHC-CCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             176607937974388855898655010-013788887579478999-----998887-9999999999999999759874
Q gi|254781225|r  427 RFLGEQDGILDLETGQKVKPTKELYIT-KSTGTPFVEGEPSQEFLD-----LVSGYF-ESEEVMDYFTRCVGMALLGGNK  499 (789)
Q Consensus       427 ~ll~~~NGv~dl~t~~~~~~~~~~~~t-~~~~~~y~~~a~~p~~~~-----~l~~~~-~d~e~~~~l~~~~g~~l~g~~~  499 (789)
T Consensus         1 ~~~~~~ng~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~p~~~~w~~~~~l~~~~~gd~~~~~~~~~~~g~~~~g~~~   80 (316)
T TIGR01613         1 YLLNVGNGVYDLRTGELLPHDPDEDHTTRKITTEYDPDADCPTWNGWDPDAFLLELFGGDNELVEYLQRLAGYSLTGNYT   80 (316)
T ss_pred             CCCCCCCCEEECCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             93114751254225733535761020120113432676666300146624678876257168999999997322023200


Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCC-CCCCCCEE
Q ss_conf             33799997078862578999999972330003442676420124555568988997389809999346777-60131002
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI  578 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~-~~~~~~~~  578 (789)
T Consensus        81 ~~~~~~l~G~G~~Gk~~~~~~l~~~~G~~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~g~~~~~~~~~  156 (316)
T TIGR01613        81 EQKLFFLYGNGGNGKSTFQDLLSNLLGDYATNAVASLFLEELA----SEHRFGLARLEGKRLVIGDEVEKGVYRLDESTV  156 (316)
T ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHHCCHHCCCHHHHHHHHHH----HCCCCHHHHHCCCEEEEECCCCCCCEEECCCCE
T ss_conf             0256778625888436899999998341000201356777665----213300232103237862366745232012222


Q ss_pred             EEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCC---CCCHHHHHCCCCHHHH
Q ss_conf             4541598587321047860687145289997388634267984166468999658878887---8783342201204479
Q gi|254781225|r  579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQKLETKYTLEA  655 (789)
Q Consensus       579 K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~---d~~~~~~~~~~e~~~i  655 (789)
T Consensus       157 k~l~ggd~~~~~~~~~~~~-~~~~~~~~~~~~n~~P~~~~~~~~~~rr~~~~pf~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (316)
T TIGR01613       157 KSLTGGDTVTARFKNKDPF-EFTPSFTLVLATNHLPRIKGFDGGIWRRLRIIPFTKVIPGEKKANKKLKEDLILNEGDGI  235 (316)
T ss_pred             EEECCCCEEEEEECCCCHH-HHHCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCHHCCHHHHHHHHHHCCHHH
T ss_conf             1111673357641477401-110152145521676655787631011346631322138510000678888875210478


Q ss_pred             HHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             9999999999998788988-788999999999984263888875432626884111799999999999850466755545
Q gi|254781225|r  656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS  734 (789)
Q Consensus       656 ~~w~l~g~~~~~~~g~~~~-~p~~v~~a~~~y~~~~D~v~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s  734 (789)
T Consensus       236 ~~~~~~g~~~~~~~~-~~~p~p~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~--~~~~~  312 (316)
T TIGR01613       236 LAWAVEGIRLWLRFG-DFSPEPKAVLEATEEYKEENDPVGRFLEECCDDEEGEKVPTRFVYEAYKEWCEEGGE--YPLLS  312 (316)
T ss_pred             HHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCCC
T ss_conf             999998754443101-368875889999987630120578877765202133113467888889999872586--13410


Q ss_pred             HH
Q ss_conf             25
Q gi|254781225|r  735 TR  736 (789)
Q Consensus       735 ~~  736 (789)
T Consensus       313 ~~  314 (316)
T TIGR01613       313 KN  314 (316)
T ss_pred             CC
T ss_conf             24