HHsearch alignment for GI: 254781225 and conserved domain: TIGR01613
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain; InterPro: IPR006500 These sequences form a clade within a larger family of proteins from viruses of bacteria and animals. Members of the family that contain this domain are found in phage and the plasmids of bacteria and archaea. .
Probab=100.00 E-value=0 Score=407.15 Aligned_cols=302 Identities=25% Similarity=0.425 Sum_probs=273.1
Q ss_pred CEEEECCCEEECCCCCCCCCCHHHHCC-EECCCCCCCCCCHHHHHH-----HHHHHC-CCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 176607937974388855898655010-013788887579478999-----998887-9999999999999999759874
Q gi|254781225|r 427 RFLGEQDGILDLETGQKVKPTKELYIT-KSTGTPFVEGEPSQEFLD-----LVSGYF-ESEEVMDYFTRCVGMALLGGNK 499 (789)
Q Consensus 427 ~ll~~~NGv~dl~t~~~~~~~~~~~~t-~~~~~~y~~~a~~p~~~~-----~l~~~~-~d~e~~~~l~~~~g~~l~g~~~ 499 (789)
T Consensus 1 ~~~~~~ng~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~p~~~~w~~~~~l~~~~~gd~~~~~~~~~~~g~~~~g~~~ 80 (316)
T TIGR01613 1 YLLNVGNGVYDLRTGELLPHDPDEDHTTRKITTEYDPDADCPTWNGWDPDAFLLELFGGDNELVEYLQRLAGYSLTGNYT 80 (316)
T ss_pred CCCCCCCCEEECCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 93114751254225733535761020120113432676666300146624678876257168999999997322023200
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCC-CCCCCCEE
Q ss_conf 33799997078862578999999972330003442676420124555568988997389809999346777-60131002
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI 578 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~-~~~~~~~~ 578 (789)
T Consensus 81 ~~~~~~l~G~G~~Gk~~~~~~l~~~~G~~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~g~~~~~~~~~ 156 (316)
T TIGR01613 81 EQKLFFLYGNGGNGKSTFQDLLSNLLGDYATNAVASLFLEELA----SEHRFGLARLEGKRLVIGDEVEKGVYRLDESTV 156 (316)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCCHHCCCHHHHHHHHHH----HCCCCHHHHHCCCEEEEECCCCCCCEEECCCCE
T ss_conf 0256778625888436899999998341000201356777665----213300232103237862366745232012222
Q ss_pred EEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCC---CCCHHHHHCCCCHHHH
Q ss_conf 4541598587321047860687145289997388634267984166468999658878887---8783342201204479
Q gi|254781225|r 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQKLETKYTLEA 655 (789)
Q Consensus 579 K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~---d~~~~~~~~~~e~~~i 655 (789)
T Consensus 157 k~l~ggd~~~~~~~~~~~~-~~~~~~~~~~~~n~~P~~~~~~~~~~rr~~~~pf~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (316)
T TIGR01613 157 KSLTGGDTVTARFKNKDPF-EFTPSFTLVLATNHLPRIKGFDGGIWRRLRIIPFTKVIPGEKKANKKLKEDLILNEGDGI 235 (316)
T ss_pred EEECCCCEEEEEECCCCHH-HHHCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCHHCCHHHHHHHHHHCCHHH
T ss_conf 1111673357641477401-110152145521676655787631011346631322138510000678888875210478
Q ss_pred HHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999999998788988-788999999999984263888875432626884111799999999999850466755545
Q gi|254781225|r 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 (789)
Q Consensus 656 ~~w~l~g~~~~~~~g~~~~-~p~~v~~a~~~y~~~~D~v~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s 734 (789)
T Consensus 236 ~~~~~~g~~~~~~~~-~~~p~p~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~--~~~~~ 312 (316)
T TIGR01613 236 LAWAVEGIRLWLRFG-DFSPEPKAVLEATEEYKEENDPVGRFLEECCDDEEGEKVPTRFVYEAYKEWCEEGGE--YPLLS 312 (316)
T ss_pred HHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCCC
T ss_conf 999998754443101-368875889999987630120578877765202133113467888889999872586--13410
Q ss_pred HH
Q ss_conf 25
Q gi|254781225|r 735 TR 736 (789)
Q Consensus 735 ~~ 736 (789)
T Consensus 313 ~~ 314 (316)
T TIGR01613 313 KN 314 (316)
T ss_pred CC
T ss_conf 24