HHsearch alignment for GI: 254781225 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.67 E-value=0.63 Score=23.86 Aligned_cols=151 Identities=16% Similarity=0.206 Sum_probs=90.2
Q ss_pred HHHCCEECCCCCCCC-----CCHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCCC---CEEEEEEECCCCCHHHHHH
Q ss_conf 550100137888875-----794789999988-8799999999999999997598743---3799997078862578999
Q gi|254781225|r 449 ELYITKSTGTPFVEG-----EPSQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKA---QRFIHIRGVGGSGKSTLMN 519 (789)
Q Consensus 449 ~~~~t~~~~~~y~~~-----a~~p~~~~~l~~-~~~d~e~~~~l~~~~g~~l~g~~~~---~~~~~~~G~G~nGKSt~~~ 519 (789)
T Consensus 535 a~vvs~~tgIPv~~l~~~e~~~l~~le~~L~~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK 614 (852)
T TIGR03345 535 AEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 99999996898788617888888867999999972849999999999999871799999985689987899877899999
Q ss_pred HHHHHH-CCC-CCCCCCHHHHHHCCCCCCCCCCHHHHHHCCC----------------------EEEEEECCCCCCCCCC
Q ss_conf 999972-330-0034426764201245555689889973898----------------------0999934677760131
Q gi|254781225|r 520 LIKYAF-GNQ-YVINAEASDIMQNRPPEAGKANPSLIRLMGS----------------------RIVIISETNENDEINA 575 (789)
Q Consensus 520 ~l~~ll-G~~-~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~----------------------r~~~~~E~~~~~~~~~ 575 (789)
T Consensus 615 ~LA~~LFg~e~~liR~DMSEy~E---------~hsvsrLiGaPPGYVGy~eGG~LTe~Vrr~PysVvLfDEIEKAHpdV~ 685 (852)
T TIGR03345 615 ALAELLYGGEQNLITINMSEFQE---------AHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVL 685 (852)
T ss_pred HHHHHHCCCCCCEEEECCHHHCC---------HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHHCCHHHH
T ss_conf 99999719861147842243210---------436878638999766748777210988809986888611300288999
Q ss_pred CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf 0024541598587321047860687145289997388
Q gi|254781225|r 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 (789)
Q Consensus 576 ~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~ 612 (789)
T Consensus 686 nilLQvlD~G~LtD~--~Gr~-vdF~Nt-IIImTSN~ 718 (852)
T TIGR03345 686 ELFYQVFDKGVMEDG--EGRE-IDFKNT-VILLTSNA 718 (852)
T ss_pred HHHHHHHCCCEEECC--CCCE-EECEEE-EEEECCCH
T ss_conf 999987246777579--9998-845212-99975724