HHsearch alignment for GI: 254781225 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.67  E-value=0.63  Score=23.86  Aligned_cols=151  Identities=16%  Similarity=0.206  Sum_probs=90.2

Q ss_pred             HHHCCEECCCCCCCC-----CCHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCCC---CEEEEEEECCCCCHHHHHH
Q ss_conf             550100137888875-----794789999988-8799999999999999997598743---3799997078862578999
Q gi|254781225|r  449 ELYITKSTGTPFVEG-----EPSQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKA---QRFIHIRGVGGSGKSTLMN  519 (789)
Q Consensus       449 ~~~~t~~~~~~y~~~-----a~~p~~~~~l~~-~~~d~e~~~~l~~~~g~~l~g~~~~---~~~~~~~G~G~nGKSt~~~  519 (789)
T Consensus       535 a~vvs~~tgIPv~~l~~~e~~~l~~le~~L~~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK  614 (852)
T TIGR03345       535 AEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL  614 (852)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf             99999996898788617888888867999999972849999999999999871799999985689987899877899999


Q ss_pred             HHHHHH-CCC-CCCCCCHHHHHHCCCCCCCCCCHHHHHHCCC----------------------EEEEEECCCCCCCCCC
Q ss_conf             999972-330-0034426764201245555689889973898----------------------0999934677760131
Q gi|254781225|r  520 LIKYAF-GNQ-YVINAEASDIMQNRPPEAGKANPSLIRLMGS----------------------RIVIISETNENDEINA  575 (789)
Q Consensus       520 ~l~~ll-G~~-~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~----------------------r~~~~~E~~~~~~~~~  575 (789)
T Consensus       615 ~LA~~LFg~e~~liR~DMSEy~E---------~hsvsrLiGaPPGYVGy~eGG~LTe~Vrr~PysVvLfDEIEKAHpdV~  685 (852)
T TIGR03345       615 ALAELLYGGEQNLITINMSEFQE---------AHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVL  685 (852)
T ss_pred             HHHHHHCCCCCCEEEECCHHHCC---------HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHHCCHHHH
T ss_conf             99999719861147842243210---------436878638999766748777210988809986888611300288999


Q ss_pred             CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf             0024541598587321047860687145289997388
Q gi|254781225|r  576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK  612 (789)
Q Consensus       576 ~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~  612 (789)
T Consensus       686 nilLQvlD~G~LtD~--~Gr~-vdF~Nt-IIImTSN~  718 (852)
T TIGR03345       686 ELFYQVFDKGVMEDG--EGRE-IDFKNT-VILLTSNA  718 (852)
T ss_pred             HHHHHHHCCCEEECC--CCCE-EECEEE-EEEECCCH
T ss_conf             999987246777579--9998-845212-99975724