HHsearch alignment for GI: 254781225 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.48 E-value=0.39 Score=25.27 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=49.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC--CC
Q ss_conf 7888875794789999988879999999999999999759874337999970788625789999999723300034--42
Q gi|254781225|r 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN--AE 534 (789)
Q Consensus 457 ~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~--~~ 534 (789)
T Consensus 5 ~~~l~~~~---tfdnFi~~--~N~~~~~~l~~~~~------~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~ 73 (226)
T TIGR03420 5 DVGLPDDP---TFDNFYAG--GNAELLAALRQLAA------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred CCCCCCCC---CHHCCCCC--CHHHHHHHHHHHHH------CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 99999987---63123658--67999999998764------668886999899999889999999999862699579952
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 6764201245555689889973898099993467
Q gi|254781225|r 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
T Consensus 74 ~~~~~~~-------~~~~l~~l~~~d~l~iDDi~ 100 (226)
T TIGR03420 74 LAELAQA-------DPEVLEGLEQADLVCLDDVE 100 (226)
T ss_pred HHHHHHH-------HHHHHHHCCCCCEEEEECHH
T ss_conf 9998775-------39999727448999996633