HHsearch alignment for GI: 254781225 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.86 E-value=0.012 Score=35.35 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=63.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC--CCCCCCCCHHHHHH-CCCCCCC-----CCCHHHHHHCCCEEEEEECCCCCC
Q ss_conf 337999970788625789999999723--30003442676420-1245555-----689889973898099993467776
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG--NQYVINAEASDIMQ-NRPPEAG-----KANPSLIRLMGSRIVIISETNEND 571 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG--~~~~~~~~~~~~~~-~~~~~~~-----~~~~~la~l~g~r~~~~~E~~~~~ 571 (789)
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCC
T ss_conf 99808998999988659999999971213798278547770467777576057788989999997699869820166559
Q ss_pred C-CCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE-EEEEC
Q ss_conf 0-1310024541598587321047860687145289997388634267984166468-99965
Q gi|254781225|r 572 E-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-IVIPF 632 (789)
Q Consensus 572 ~-~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~-~iipF 632 (789)
T Consensus 98 ~~~~~~~~~~l~~--------~~-~-~~~~~~~~~vI~~tn~~~~-~~~~~~~~~R~~~~i~~ 149 (151)
T cd00009 98 RGAQNALLRVLET--------LN-D-LRIDRENVRVIGATNRPLL-GDLDRALYDRLDIRIVI 149 (151)
T ss_pred HHHHHHHHHHHHH--------HC-C-CCCCCCCEEEEEEECCCCC-CCHHHHHHCCCCEEEEC
T ss_conf 9999999999987--------15-7-5406788899995289988-68377642559869863