HHsearch alignment for GI: 254781225 and conserved domain: pfam00493

>pfam00493 MCM MCM2/3/5 family.
Probab=91.10  E-value=0.94  Score=22.71  Aligned_cols=161  Identities=16%  Similarity=0.191  Sum_probs=72.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC----------CCCEEEEEEECCCCCHHHHHHHHHHHHCCC-CCC-C-CC
Q ss_conf             8999998887999999999999999975987----------433799997078862578999999972330-003-4-42
Q gi|254781225|r  468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGN----------KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ-YVI-N-AE  534 (789)
Q Consensus       468 ~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~----------~~~~~~~~~G~G~nGKSt~~~~l~~llG~~-~~~-~-~~  534 (789)
T Consensus        14 ~~~~l~~siaP~i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg~~ss   93 (327)
T pfam00493        14 IYDKLARSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSS   93 (327)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf             99999998597124987999999999808987658888620365118984699815609999999868870883177665


Q ss_pred             HHHHHH--CCCCCCCCCCHH--HHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEEC
Q ss_conf             676420--124555568988--9973898099993467776013100245415985873210478606871452899973
Q gi|254781225|r  535 ASDIMQ--NRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP  610 (789)
Q Consensus       535 ~~~~~~--~~~~~~~~~~~~--la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~  610 (789)
T Consensus        94 ~~GLTa~~~~d~~~~~~~leaGalvlAd~Gv~cIDEfdk~~~~d~saL~EAMEqqtVsIaKa-Gi~-~tL~ar~sVlAaa  171 (327)
T pfam00493        94 AAGLTAAVVRDPDTGEWTLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKA-GIV-ATLNARCSVLAAA  171 (327)
T ss_pred             CCCCEEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCEEEEECC-CEE-EEECCCCEEEEEE
T ss_conf             67761589980688836983684775589827850055588767999999998681776338-538-9725871799852


Q ss_pred             CCCCCCC----------CCCCCEEEEEEEE
Q ss_conf             8863426----------7984166468999
Q gi|254781225|r  611 NKHLFVR----------NPDDAWWRRYIVI  630 (789)
Q Consensus       611 N~~P~~~----------~~d~~~~rR~~ii  630 (789)
T Consensus       172 NP~~g~yd~~~~~~~ni~Lp~~lLsRFDLi  201 (327)
T pfam00493       172 NPIFGRYDPKKSVAENINLPPPLLSRFDLI  201 (327)
T ss_pred             CCCCCCCCCCCCHHHHCCCCHHHHCCEEEE
T ss_conf             776773788889888558976774501079