HHsearch alignment for GI: 254781225 and conserved domain: pfam00493
>pfam00493 MCM MCM2/3/5 family.
Probab=91.10 E-value=0.94 Score=22.71 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=72.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC----------CCCEEEEEEECCCCCHHHHHHHHHHHHCCC-CCC-C-CC
Q ss_conf 8999998887999999999999999975987----------433799997078862578999999972330-003-4-42
Q gi|254781225|r 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGN----------KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ-YVI-N-AE 534 (789)
Q Consensus 468 ~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~----------~~~~~~~~~G~G~nGKSt~~~~l~~llG~~-~~~-~-~~ 534 (789)
T Consensus 14 ~~~~l~~siaP~i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg~~ss 93 (327)
T pfam00493 14 IYDKLARSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSS 93 (327)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 99999998597124987999999999808987658888620365118984699815609999999868870883177665
Q ss_pred HHHHHH--CCCCCCCCCCHH--HHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEEC
Q ss_conf 676420--124555568988--9973898099993467776013100245415985873210478606871452899973
Q gi|254781225|r 535 ASDIMQ--NRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610 (789)
Q Consensus 535 ~~~~~~--~~~~~~~~~~~~--la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~ 610 (789)
T Consensus 94 ~~GLTa~~~~d~~~~~~~leaGalvlAd~Gv~cIDEfdk~~~~d~saL~EAMEqqtVsIaKa-Gi~-~tL~ar~sVlAaa 171 (327)
T pfam00493 94 AAGLTAAVVRDPDTGEWTLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKA-GIV-ATLNARCSVLAAA 171 (327)
T ss_pred CCCCEEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCEEEEECC-CEE-EEECCCCEEEEEE
T ss_conf 67761589980688836983684775589827850055588767999999998681776338-538-9725871799852
Q ss_pred CCCCCCC----------CCCCCEEEEEEEE
Q ss_conf 8863426----------7984166468999
Q gi|254781225|r 611 NKHLFVR----------NPDDAWWRRYIVI 630 (789)
Q Consensus 611 N~~P~~~----------~~d~~~~rR~~ii 630 (789)
T Consensus 172 NP~~g~yd~~~~~~~ni~Lp~~lLsRFDLi 201 (327)
T pfam00493 172 NPIFGRYDPKKSVAENINLPPPLLSRFDLI 201 (327)
T ss_pred CCCCCCCCCCCCHHHHCCCCHHHHCCEEEE
T ss_conf 776773788889888558976774501079