HHsearch alignment for GI: 254781225 and conserved domain: pfam00519
>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=97.98 E-value=0.00012 Score=48.66 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
Q ss_conf 57947899999888799999999999999997598743379999707886257899999997233000344267642012
Q gi|254781225|r 463 GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 (789)
Q Consensus 463 ~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~ 542 (789)
T Consensus 228 ~GdWk~Iv~FLry--Q~iefi~Fl~-alk~fLkg~PK-knCivi~GPPnTGKS~F~mSLi~fL~G~ViSfv--------- 294 (432)
T pfam00519 228 EGDWKPIVKFLRY--QGIEFISFLS-ALKDFLKGIPK-KNCLVIYGPPDTGKSMFCMSLIKFLGGKVISFV--------- 294 (432)
T ss_pred CCCHHHHHHHHHH--CCCCHHHHHH-HHHHHHCCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEE---------
T ss_conf 9976789888832--7713999999-99999648985-246999899996676899999998498699961---------
Q ss_pred CCCCCCCCHHHHHHCCCEEEEEECCCCC--CCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 4555568988997389809999346777--60131002454159858732104786068714528999738863426798
Q gi|254781225|r 543 PPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 (789)
Q Consensus 543 ~~~~~~~~~~la~l~g~r~~~~~E~~~~--~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d 620 (789)
T Consensus 295 --Ns-kShFWLqPL~daKiallDDAT~~CW~Y~D~-ylRN~LDGN~vsiD~KHkap~-QiK~P-PLLiTsNidv~~d~~~ 368 (432)
T pfam00519 295 --NS-KSHFWLQPLADAKIALLDDATHACWDYIDT-YLRNALDGNPVSIDRKHKAPV-QIKCP-PLLITSNIDVKADDRY 368 (432)
T ss_pred --CC-CCCCCCCCHHHCCEEEEECCCHHHHHHHHH-HHHHCCCCCCEEEECCCCCCH-HCCCC-CEEEEECCCCCCCCCH
T ss_conf --48-773022735327464220660888999999-876134788134552357742-02578-6588705787866321
Q ss_pred CCEEEEEEEEECCCCCC
Q ss_conf 41664689996588788
Q gi|254781225|r 621 DAWWRRYIVIPFDKPIA 637 (789)
Q Consensus 621 ~~~~rR~~iipF~~~~~ 637 (789)
T Consensus 369 ~YLhSRi~~f~F~n~fP 385 (432)
T pfam00519 369 KYLHSRITVFEFPNPFP 385 (432)
T ss_pred HHHHHEEEEEECCCCCC
T ss_conf 53343168997489887