HHsearch alignment for GI: 254781225 and conserved domain: pfam00519

>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=97.98  E-value=0.00012  Score=48.66  Aligned_cols=156  Identities=15%  Similarity=0.205  Sum_probs=107.5

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
Q ss_conf             57947899999888799999999999999997598743379999707886257899999997233000344267642012
Q gi|254781225|r  463 GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR  542 (789)
Q Consensus       463 ~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~  542 (789)
T Consensus       228 ~GdWk~Iv~FLry--Q~iefi~Fl~-alk~fLkg~PK-knCivi~GPPnTGKS~F~mSLi~fL~G~ViSfv---------  294 (432)
T pfam00519       228 EGDWKPIVKFLRY--QGIEFISFLS-ALKDFLKGIPK-KNCLVIYGPPDTGKSMFCMSLIKFLGGKVISFV---------  294 (432)
T ss_pred             CCCHHHHHHHHHH--CCCCHHHHHH-HHHHHHCCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEE---------
T ss_conf             9976789888832--7713999999-99999648985-246999899996676899999998498699961---------


Q ss_pred             CCCCCCCCHHHHHHCCCEEEEEECCCCC--CCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCC
Q ss_conf             4555568988997389809999346777--60131002454159858732104786068714528999738863426798
Q gi|254781225|r  543 PPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD  620 (789)
Q Consensus       543 ~~~~~~~~~~la~l~g~r~~~~~E~~~~--~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d  620 (789)
T Consensus       295 --Ns-kShFWLqPL~daKiallDDAT~~CW~Y~D~-ylRN~LDGN~vsiD~KHkap~-QiK~P-PLLiTsNidv~~d~~~  368 (432)
T pfam00519       295 --NS-KSHFWLQPLADAKIALLDDATHACWDYIDT-YLRNALDGNPVSIDRKHKAPV-QIKCP-PLLITSNIDVKADDRY  368 (432)
T ss_pred             --CC-CCCCCCCCHHHCCEEEEECCCHHHHHHHHH-HHHHCCCCCCEEEECCCCCCH-HCCCC-CEEEEECCCCCCCCCH
T ss_conf             --48-773022735327464220660888999999-876134788134552357742-02578-6588705787866321


Q ss_pred             CCEEEEEEEEECCCCCC
Q ss_conf             41664689996588788
Q gi|254781225|r  621 DAWWRRYIVIPFDKPIA  637 (789)
Q Consensus       621 ~~~~rR~~iipF~~~~~  637 (789)
T Consensus       369 ~YLhSRi~~f~F~n~fP  385 (432)
T pfam00519       369 KYLHSRITVFEFPNPFP  385 (432)
T ss_pred             HHHHHEEEEEECCCCCC
T ss_conf             53343168997489887