HHsearch alignment for GI: 254781225 and conserved domain: pfam00910

>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.

Probab=91.20  E-value=0.33  Score=25.74  Aligned_cols=101  Identities=20%  Similarity=0.275  Sum_probs=54.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCC--CCCCEEEEE
Q ss_conf             999707886257899999997233000344267642012455556898899738980999934677760--131002454
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE--INAAKIKQM  581 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~--~~~~~~K~l  581 (789)
T Consensus         1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~--~~~~~----~~wdgY~gq~vvi~DD~~~~~~~~~~~~~~~~l   74 (105)
T pfam00910         1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYS--RNPDD----DFWDGYTGQPVVIIDDFGQNPDGPSDEAELIRL   74 (105)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE--CCCCC----CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             989799989889999999999999837787897796--78877----656788998579996577788862889999987


Q ss_pred             ECCCEEEEEEC--CCCCCEEEECCEEEEEECCC
Q ss_conf             15985873210--47860687145289997388
Q gi|254781225|r  582 TGGDCMTARLN--YGNTYSESPASFTPFIVPNK  612 (789)
Q Consensus       582 tggD~i~ar~~--~~~~~~~~~p~~~~~~~~N~  612 (789)
T Consensus        75 vs~~p~~~~ma~le~Kg-~~f~s~~v-i~tsN~  105 (105)
T pfam00910        75 VSSTPYPPPMAALEEKG-TPFTSKFV-IVTSNF  105 (105)
T ss_pred             HCCCCCCCCCCCHHHCC-CCCCCCEE-EEECCC
T ss_conf             56998388866761488-84468889-994799