HHsearch alignment for GI: 254781225 and conserved domain: pfam01057
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=98.21 E-value=3.3e-05 Score=52.27 Aligned_cols=193 Identities=14% Similarity=0.082 Sum_probs=117.8
Q ss_pred CCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 89865501001378888757947899999888799999999999999997598743379999707886257899999997
Q gi|254781225|r 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 445 ~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
T Consensus 61 ~~~~~~~l~~~~~~~~~~i~~-N~~~~l~~~~gy~P~~~g---~~l~~w~~k~~~krN~i~~~Gp~~TGks~la~ai~~~ 136 (271)
T pfam01057 61 TKTALDYLAKPEVTANFDIEE-NRIYQLLSLNGYNPAEVG---QVLLAWLSKQGGKRNTVWFYGPASTGKTNLAQAIAHA 136 (271)
T ss_pred CCCHHHHHHCCCCCCCCCCCC-CHHHHHHHHCCCCHHHHH---HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 575999850678886566441-789999998499989999---9999998447888756999889876789999999986
Q ss_pred HCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCE
Q ss_conf 23300034426764201245555689889973898099993467776013100245415985873210478606871452
Q gi|254781225|r 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 (789)
Q Consensus 525 lG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~ 604 (789)
T Consensus 137 ~~~~g~v~~~-------------N~~fp~~d~~~~~~~wwee~~~~~~~v-e~~r~il~G~~i~vD~k~k~~-~~l~~~P 201 (271)
T pfam01057 137 VPLYGCVNWT-------------NENFPFNDCPNKLLIWWEEGLMTVKVV-ELAKAILGGTDVRVDQKCKGS-VEIEPTP 201 (271)
T ss_pred CCCEEEECCC-------------CCCCCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCCCCEEECCCCCC-CCCCCCC
T ss_conf 8952785178-------------778876446547899980788718899-999997299962563478980-0237997
Q ss_pred EEEEECCCCC-CCCC-------CCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 8999738863-4267-------9841664689996588788878783342201204479999999
Q gi|254781225|r 605 TPFIVPNKHL-FVRN-------PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661 (789)
Q Consensus 605 ~~~~~~N~~P-~~~~-------~d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i~~w~l~ 661 (789)
T Consensus 202 v-iiTsn~di~~v~~g~~~s~~Ha~~Lk~rm~~~~~~~~l~~~----fg~it~~d~~~f~~W~~~ 261 (271)
T pfam01057 202 V-IITSNHDITLVVDGNTTSFEHAQPLKDRMYKFNLTKRLPPA----FGLITKEDVRQFLQWSEN 261 (271)
T ss_pred E-EEEECCCEEEEEECCCCCHHHHHHHHHHEEEEEECCCCCCC----CCCCCHHHHHHHHHHHHH
T ss_conf 8-99827857999868753577777876536898857674887----785489999999999860