HHsearch alignment for GI: 254781225 and conserved domain: pfam02257

>pfam02257 RFX_DNA_binding RFX DNA-binding domain. RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer.
Probab=96.34  E-value=0.012  Score=35.31  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=52.1

Q ss_pred             HHHHHHHHEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf             8888754326268841117999999999998504667555452568999986354233310010256765
Q gi|254781225|r  693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS  762 (789)
Q Consensus       693 v~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~  762 (789)
T Consensus         8 a~~WL~~~~e~~~~~~lPR~~vY~~Y~~~C~~~~---~~pl~~AsFGKliR~v-F-P~lktRRLGtRG~S   72 (73)
T pfam02257         8 ALQWLRDNCEESEGSSLPRNRVYAHYVSHCAELG---LKPLSAASFGKLIRSV-F-PGLKTRRLGTRGQS   72 (73)
T ss_pred             HHHHHHHHCEECCCCCCCCHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHH-C-CCCCCCCCCCCCCC
T ss_conf             9999997744289972350899999999999739---9747787899999998-8-89630105667788