HHsearch alignment for GI: 254781225 and conserved domain: pfam02257
>pfam02257 RFX_DNA_binding RFX DNA-binding domain. RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer.
Probab=96.34 E-value=0.012 Score=35.31 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=52.1
Q ss_pred HHHHHHHHEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 8888754326268841117999999999998504667555452568999986354233310010256765
Q gi|254781225|r 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 (789)
Q Consensus 693 v~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 762 (789)
T Consensus 8 a~~WL~~~~e~~~~~~lPR~~vY~~Y~~~C~~~~---~~pl~~AsFGKliR~v-F-P~lktRRLGtRG~S 72 (73)
T pfam02257 8 ALQWLRDNCEESEGSSLPRNRVYAHYVSHCAELG---LKPLSAASFGKLIRSV-F-PGLKTRRLGTRGQS 72 (73)
T ss_pred HHHHHHHHCEECCCCCCCCHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHH-C-CCCCCCCCCCCCCC
T ss_conf 9999997744289972350899999999999739---9747787899999998-8-89630105667788