HHsearch alignment for GI: 254781225 and conserved domain: pfam03288
>pfam03288 Pox_D5 Poxvirus D5 protein-like. This family includes D5 from Poxviruses which is necessary for viral DNA replication, and is a nucleic acid independent nucleoside triphosphatase. Members of this family are also found outside of poxviruses. This domain is a DNA-binding winged HTH domain.
Probab=97.53 E-value=0.00016 Score=47.78 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=49.0
Q ss_pred HCCHHHHHHHHHEEECCCCEECHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHC
Q ss_conf 42638888754326268841117999999999998504667555-4525689999863
Q gi|254781225|r 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR-ISTRTVTLNLKQK 745 (789)
Q Consensus 689 ~~D~v~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~-~s~~~~~~~l~~~ 745 (789)
T Consensus 1 ~nD~v~dF~~~~~~~~~s~~vP~~~ly~~y~~~~e~~g~---~~~L~~~~F~~~l~~~ 55 (88)
T pfam03288 1 DNDPVPDFAEELFVLFKSDRVPSDFLYEAYKAWCEKNGY---VPVLSKRTFQQRLAKH 55 (88)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHHHHH
T ss_conf 986099999999764546407599999999999998599---7752177999999987