HHsearch alignment for GI: 254781225 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.99 E-value=0.026 Score=33.07 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=75.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHCCCCCCCCCCH
Q ss_conf 9888799999999999999997598743379999707886257899999997233000-344267642012455556898
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANP 551 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~~~~~~~~~~~~~~~~~ 551 (789)
T Consensus 23 l~e~vGQehl~~~l~~~i~a~~~~~~~l~h-~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~--~i~~~~-----di~~ 94 (234)
T pfam05496 23 LDEYIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGP--ALEKPG-----DLAA 94 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEECCH--HHHHHH-----HHHH
T ss_conf 666069499999999999988742777662-78878999988899999998408753761426--664389-----9999
Q ss_pred HHHHHCCCEEEEEECCCCCCCCC-CCEEEEEECCCE-EE-EEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 89973898099993467776013-100245415985-87-3210478606871452899973886342679841664689
Q gi|254781225|r 552 SLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDC-MT-ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 (789)
Q Consensus 552 ~la~l~g~r~~~~~E~~~~~~~~-~~~~K~ltggD~-i~-ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~ 628 (789)
T Consensus 95 ~l~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe~~~l~---~pl~sR~~ 171 (234)
T pfam05496 95 ILTNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATTRAGLLT---SPLRDRFG 171 (234)
T ss_pred HHHHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCCC---HHHHHHHH
T ss_conf 998458998899966543587688744553346169999636766324652689759985215666477---77997621