HHsearch alignment for GI: 254781225 and conserved domain: pfam06431
>pfam06431 Polyoma_lg_T_C Polyomavirus large T antigen C-terminus.
Probab=94.60 E-value=0.3 Score=26.04 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=98.2
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEE
Q ss_conf 9999999997598743379999707886257899999997233000-344267642012455556898899738980999
Q gi|254781225|r 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 (789)
Q Consensus 485 ~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~ 563 (789)
T Consensus 140 ~i~~~lk-~~v~N~PKkRy~lFkGPvNsGKTTlAAAlldLcgGkaLNIN~P~-----------dkL~FELG~AIDQfmVv 207 (417)
T pfam06431 140 VIYDFLK-CIVYNIPKKRYWLFKGPIDSGKTTLAAALLDLCGGKALNVNLPL-----------ERLNFELGVAIDQFMVV 207 (417)
T ss_pred HHHHHHH-HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCH-----------HHCCHHHCCEEEEEEEE
T ss_conf 9999999-99618874115887678677748799999986368612047985-----------64453530021104788
Q ss_pred EECCCCCCCC-C----CC----EEE----EEECCCEEEEEECCCCCCEE-EECCEEEEEECCCCCCCCCCCCCEEEEE-E
Q ss_conf 9346777601-3----10----024----54159858732104786068-7145289997388634267984166468-9
Q gi|254781225|r 564 ISETNENDEI-N----AA----KIK----QMTGGDCMTARLNYGNTYSE-SPASFTPFIVPNKHLFVRNPDDAWWRRY-I 628 (789)
Q Consensus 564 ~~E~~~~~~~-~----~~----~~K----~ltggD~i~ar~~~~~~~~~-~~p~~~~~~~~N~~P~~~~~d~~~~rR~-~ 628 (789)
T Consensus 208 FEDVK-Gq~~~~k~Lp~G~Gi~NLDNLRDyLDGsV~VNLEKKH~NKrsQIFPPg---IVTmNeY~iP~T----l~~RF~~ 279 (417)
T pfam06431 208 FEDVK-GTGAESRDLPSGHGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKT----LQARFVR 279 (417)
T ss_pred EEECC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECHHHHHCCCCCCCCCCC---EEEECCCCCCHH----HHHHHHH
T ss_conf 75247-876655689999885321557775157411034453036653148996---663056666266----7656440
Q ss_pred EEECCCCCCCCCCCHHHHHCCCCHHHH-------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf 996588788878783342201204479-------9999999999998788988788999999999984263
Q gi|254781225|r 629 VIPFDKPIANRDASFAQKLETKYTLEA-------KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 (789)
Q Consensus 629 iipF~~~~~~~d~~~~~~~~~~e~~~i-------~~w~l~g~~~~~~~g~~~~~p~~v~~a~~~y~~~~D~ 692 (789)
T Consensus 280 ~l~F~~-----k~~L~~sL~~~~~l~~~RILQSG~TlLL--lLIw~~pv~~F--~~~iq~~V~~WKe~ld~ 341 (417)
T pfam06431 280 QIDFRP-----KDYLRKSLERSEFLLEKRILQSGMTLLL--LLIWFRPVADF--AQSIQSRIVEWKERLDK 341 (417)
T ss_pred EECCCH-----HHHHHHHHHCCHHHHHHHHHHCCHHHHH--HHHHHCCHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 235765-----6999999851889989999701389999--99996868777--69999999999999998